Dataset stringlengths 13 214 | Experiment stringlengths 14 76 | Dataset DOI / URL stringlengths 32 128 | Grouping stringclasses 3
values | 2D images int64 0 5.2k | 3D acquisitions int64 0 358 | Training tiles int64 0 17.6k |
|---|---|---|---|---|---|---|
Mouse Organ of Corti Cochlea SBF-SEM - 200um Subvolume | Mouse Cochlea SBF-SEM | https://webknossos.org/datasets/HuaLab-CBA-mice-cochlea-mid-7w-200um-603df5810100001a0045ca5e/view | Public | 0 | 1 | 402 |
Mouse Ventral Cochlear Nucleus SBF-SEM Volume | Mouse Cochlear Nucleus SBF-SEM | https://doi.org/10.60533/boss-2023-yw23 | Public | 0 | 1 | 320 |
Conjugate electron microscopy and array tomography | Mouse Cortex Conjugate Array Tomography | https://doi.org/10.60533/BOSS-2015-EJSN | Public | 0 | 3 | 202 |
SmartEM Mouse Cortex 10x10 Fused EM Volume | Mouse Cortex SEM | https://doi.org/10.60533/boss-2023-4w35 | Public | 0 | 1 | 199 |
Mouse Anterior Cingulate Cortex (ACC) SBEM Volume | Mouse Cortical Areas SBF-SEM | https://webknossos.org/datasets/JO_ACC_Z_straightenedPosthoc-5c1cd43801000026708c2783/view | Public | 0 | 1 | 273 |
Mouse Lateral Parietal Association (LPtA) SBEM Volume | Mouse Cortical Areas SBF-SEM | https://webknossos.org/datasets/2016-05-26_FD0144-2_v2s2s_full-5c1ede340100007c838c3579/view | Public | 0 | 1 | 6 |
Mouse Posterior Parietal Cortex (PPC) SBEM Volume | Mouse Cortical Areas SBF-SEM | https://webknossos.org/datasets/2017-04-03_ppcAK99_76x79-5c1cd439010000e66f8c2786/view | Public | 0 | 1 | 151 |
Mouse Posterior Parietal Cortex (PPC-2) SBEM Volume | Mouse Cortical Areas SBF-SEM | https://webknossos.org/datasets/AK_CorrelativeExperiment06469_P57_st003_st004-5c1cd4380100004f6f8c2784/view | Public | 0 | 1 | 400 |
Mouse Primary Somatosensory Cortex (S1) SBEM Volume | Mouse Cortical Areas SBF-SEM | https://webknossos.org/datasets/2012-11-23_ex144_st08x2New-5c1cd439010000e66f8c2787/view | Public | 0 | 1 | 400 |
Mouse Secondary Visual Cortex (V2) SBEM Volume | Mouse Cortical Areas SBF-SEM | https://webknossos.org/datasets/V2_102_l23_ak_straightenedPosthoc-5c1cd4380100004f6f8c2785/view | Public | 0 | 1 | 398 |
Mouse Cremaster Endothelial Cell CLXEM | Mouse Cremaster Endothelial Cell SBF-SEM | https://doi.org/10.6019/EMPIAR-11958 | Public | 0 | 1 | 178 |
Cytotoxic T Lymphocyte Attacking ID8 Ovarian Cancer Cell - jrc_ctl-id8-2 | Mouse Cytotoxic T Lymphocyte Attacking Ovarian Cancer Cell FIB-SEM | https://doi.org/10.6084/m9.figshare.14447541 | Public | 0 | 1 | 537 |
Cytotoxic T Lymphocyte Attacking ID8 Ovarian Cancer Cell - jrc_ctl-id8-3 | Mouse Cytotoxic T Lymphocyte Attacking Ovarian Cancer Cell FIB-SEM | https://doi.org/10.6084/m9.figshare.14447562 | Public | 0 | 1 | 266 |
Cytotoxic T Lymphocyte Attacking ID8 Ovarian Cancer Cell - jrc_ctl-id8-4 | Mouse Cytotoxic T Lymphocyte Attacking Ovarian Cancer Cell FIB-SEM | https://doi.org/10.6084/m9.figshare.14447565 | Public | 0 | 1 | 299 |
Cytotoxic T Lymphocyte Attacking ID8 Ovarian Cancer Cell - jrc_ctl-id8-5 | Mouse Cytotoxic T Lymphocyte Attacking Ovarian Cancer Cell FIB-SEM | https://doi.org/10.6084/m9.figshare.14447568 | Public | 0 | 1 | 209 |
Killer T-Cell Attacking Ovarian Cancer Cell | Mouse Cytotoxic T Lymphocyte Attacking Ovarian Carcinoma FIB-SEM | https://doi.org/10.25378/janelia.13114454 | Public | 0 | 1 | 400 |
Mouse deep nuclei (jrc_mus-cerebellum-4) | Mouse Deep Cerebellar Nuclei FIB-SEM | https://doi.org/10.25378/janelia.28754318 | Public | 0 | 1 | 165 |
Mouse deep nuclei (jrc_mus-cerebellum-5) | Mouse Deep Cerebellar Nuclei FIB-SEM | https://doi.org/10.25378/janelia.28754696 | Public | 0 | 1 | 261 |
3D FIB/SEM Imaging of the Molecular Layer of the Mouse Dentate Gyrus | Mouse Dentate Gyrus Astrocyte Leaflet FIB-SEM | https://doi.org/10.6019/EMPIAR-12557 | Public | 0 | 5 | 395 |
Meissner Nerve-Injury Digit Skin Volume | Mouse Digit Skin Meissner Corpuscle Nerve Injury SBF-SEM | https://webknossos.org/datasets/Meissner_SNI_1_VG-2021-10-15-sni1-align2-621e2194010000a1005dcdc9/view | Public | 0 | 1 | 400 |
Meissner Sham Digit Skin Volume | Mouse Digit Skin Meissner Corpuscle Nerve Injury SBF-SEM | https://webknossos.org/datasets/Meissner_Sham_1_VG-2021-10-15-sham1-align2-621e215801000011015dcdc8/view | Public | 0 | 1 | 261 |
Mouse dorsal striatum (jrc_mus-dorsal-striatum) | Mouse Dorsal Striatum FIB-SEM (jrc_mus-dorsal-striatum) | https://doi.org/10.25378/janelia.24222688 | Public | 0 | 1 | 14 |
Mouse dorsal striatum (jrc_mus-dorsal-striatum-2) | Mouse Dorsal Striatum FIB-SEM (jrc_mus-dorsal-striatum-2) | https://doi.org/10.25378/janelia.28754705 | Public | 0 | 1 | 400 |
Mouse Duodenum FIB-SEM Volume | Mouse Duodenum FIB-SEM | https://openorganelle.janelia.org/datasets/jrc_mus-duodenum-1a | Public | 0 | 1 | 0 |
FIB-SEM of 2-cell-stage like cells (2CLC) in mouse embryonic stem cells (mESC) | Mouse ESC-Derived 2-Cell-Like Cell FIB-SEM | https://doi.org/10.6019/EMPIAR-13260 | Public | 0 | 2 | 155 |
Mouse Epididymis FIB-SEM Volume - jrc_mus-epididymis-1 | Mouse Epididymis FIB-SEM (jrc_mus-epididymis-1) | https://doi.org/10.25378/janelia.22190377 | Public | 0 | 1 | 141 |
Mouse Epididymis FIB-SEM Volume - jrc_mus-epididymis-2 | Mouse Epididymis FIB-SEM (jrc_mus-epididymis-2) | https://doi.org/10.25378/janelia.23407907 | Public | 0 | 1 | 142 |
WDR35 Periciliary Vesicle Tomograms (Figure 7 source data) | Mouse Fibroblast Wdr35 Periciliary Vesicle ET | https://doi.org/10.5061/dryad.m37pvmd33 | Public | 0 | 5 | 51 |
GT1-7 FIB-SEM Treatment Series | Mouse GT1-7 Neuron Spermidine Autophagy FIB-SEM | https://doi.org/10.6019/EMPIAR-10946 | Public | 0 | 6 | 455 |
Electron tomography of mitochondria from adult and aged mice hearts | Mouse Heart Mitochondria ET | https://doi.org/10.6019/EMPIAR-13004 | Public | 0 | 1 | 13 |
Mouse Hemostatic Plug SBF-SEM Volumes | Mouse Hemostatic Plug SBF-SEM | https://doi.org/10.6019/EMPIAR-13192 | Public | 0 | 6 | 1,971 |
Three-dimensional nanostructure of an intact microglia cell | Mouse Hippocampal Microglia SBF-SEM | https://doi.org/10.6019/EMPIAR-10201 | Public | 0 | 2 | 232 |
Synapses in transmission electron micrographs | Mouse Hippocampal Synapse TEM | https://doi.org/10.5281/zenodo.14236382 | Public | 13 | 0 | 167 |
Mouse Hippocampus CA1 eFIB-SEM Volume - jrc_mus-hippocampus-2 | Mouse Hippocampus CA1 FIB-SEM | https://doi.org/10.25378/janelia.28894697 | Public | 0 | 1 | 400 |
Mouse Hippocampus CA1 eFIB-SEM Volume - jrc_mus-hippocampus-3 | Mouse Hippocampus CA1 FIB-SEM | https://doi.org/10.25378/janelia.28895000 | Public | 0 | 1 | 400 |
FIB-SEM datasets of hippocampal neurons from WT and FAM92A1 knockout mice | Mouse Hippocampus FAM92A1 Knockout FIB-SEM | https://doi.org/10.6019/EMPIAR-12041 | Public | 0 | 2 | 93 |
Mouse Kidney FIB-SEM Volume | Mouse Kidney FIB-SEM (jrc_mus-kidney) | https://doi.org/10.25378/janelia.16913035 | Public | 0 | 1 | 400 |
Mouse Kidney FIB-SEM Volume | Mouse Kidney FIB-SEM (jrc_mus-kidney-2) | https://doi.org/10.25378/janelia.23411009 | Public | 0 | 1 | 400 |
Mouse Kidney Glomerulus FIB-SEM Volume | Mouse Kidney Glomerulus FIB-SEM | https://doi.org/10.25378/janelia.24164004 | Public | 0 | 1 | 289 |
Mouse Lateral Geniculate Nucleus SBEM Stacks | Mouse Lateral Geniculate Nucleus SBF-SEM | https://doi.org/10.60533/BOSS-2023-3TJJ | Public | 0 | 2 | 800 |
Mouse Liver Acinus FIB-SEM Volume - jrc_mus-liver-zon-2 | Mouse Liver Acinus FIB-SEM | https://doi.org/10.25378/janelia.24135486 | Public | 0 | 1 | 400 |
Mouse Liver Acinus Zone 1 FIB-SEM Volume - jrc_mus-liver-zon-1 | Mouse Liver Acinus FIB-SEM (Zone 1) | https://doi.org/10.25378/janelia.24128700 | Public | 0 | 1 | 383 |
Parlakgul 2022 Mouse Liver FIB-SEM | Mouse Liver FIB-SEM (Parlakgul 2022) | https://doi.org/10.6019/EMPIAR-10791 | Public | 0 | 4 | 1,526 |
Mouse Liver FIB-SEM Volume | Mouse Liver FIB-SEM (jrc_mus-liver) | https://doi.org/10.25378/janelia.16913047 | Public | 0 | 1 | 400 |
Mouse Liver FIB-SEM Volume - jrc_mus-liver-2 | Mouse Liver FIB-SEM (jrc_mus-liver-2) | https://doi.org/10.25378/janelia.23411426 | Public | 0 | 1 | 400 |
Parlakgul 2024 Mouse Liver FIB-SEM Volumes | Mouse Liver Hepatic ER and Mitochondria FIB-SEM | https://doi.org/10.6019/EMPIAR-12017 | Public | 0 | 6 | 2,400 |
Data from: Hepatic steatosis induced by nicotine plus Coca-Cola™ is prevented by nicotinamide riboside (NR) | Mouse Liver Nicotine & Coca-Cola Steatosis TEM | https://doi.org/10.5061/dryad.g1jwstqx7 | Public | 15 | 0 | 0 |
Ventilation-induced changes in pulmonary microarchitecture and gene-expression profiles in SP-B deficient mice | Mouse Lung Alveolar Tight Junction FIB-SEM | https://doi.org/10.5281/zenodo.16782623 | Public | 0 | 2 | 139 |
Mouse Lung FIB-SEM Volume | Mouse Lung FIB-SEM | https://openorganelle.janelia.org/datasets/jrc_mus-lung-2a | Public | 0 | 1 | 0 |
Mouse Guard Hair Follicle FIB-SEM | Mouse Mechanosensory End Organs FIB-SEM | https://doi.org/10.25378/janelia.23969061 | Public | 0 | 1 | 378 |
Mouse Meissner Corpuscle FIB-SEM - Double-innervated | Mouse Mechanosensory End Organs FIB-SEM | https://doi.org/10.25378/janelia.23969109 | Public | 0 | 1 | 121 |
Mouse Meissner Corpuscle FIB-SEM - Single-innervated | Mouse Mechanosensory End Organs FIB-SEM | https://doi.org/10.25378/janelia.23969076 | Public | 0 | 1 | 400 |
Mouse Pacinian Corpuscle FIB-SEM | Mouse Mechanosensory End Organs FIB-SEM | https://doi.org/10.25378/janelia.23969112 | Public | 0 | 1 | 400 |
K0068_05 Mouse mPFC SBEM Volume | Mouse Medial Prefrontal Cortex SBF-SEM | https://webknossos.org/datasets/K0068_05-6037e03401000099003877e4/view | Public | 0 | 1 | 300 |
Efficient cell-wide mapping of mitochondria in electron microscopic volumes using webKnossos | Mouse Multi-Organ mito-SegEM SBF-SEM | https://doi.org/10.6019/EMPIAR-12535 | Public | 0 | 3 | 1,200 |
Electron tomography - Myotubes:Fam134bKO and WT | Mouse Myotube FAM134B ER Electron Tomography | https://doi.org/10.6019/EMPIAR-12473 | Public | 0 | 2 | 6 |
Kasthuri Mouse Neocortex Volume | Mouse Neocortex SEM | https://webknossos.org/datasets/kasthuri2011-5c42004001000096156f49d8/view | Public | 0 | 1 | 343 |
Performing Correlative Light and Electron Microscopy to reveal the structural organization and location of alpha-synuclein aggregation hotspots inside the neuron. | Mouse Neuron Alpha-Synuclein Aggregation | https://doi.org/10.6019/EMPIAR-11066 | Public | 0 | 7 | 609 |
Dopamine Axon Connectome Volumes (NAc/VTA, saline and cocaine) | Mouse Nucleus Accumbens Dopamine Axon Cocaine SEM | https://doi.org/10.60533/BOSS-2021-YA04 | Public | 0 | 13 | 5,200 |
Mouse nucleus accumbens | Mouse Nucleus Accumbens FIB-SEM (jrc_mus-nacc-1) | https://doi.org/10.25378/janelia.27075514 | Public | 0 | 1 | 6 |
Mouse Nucleus Accumbens FIB-SEM Volume - jrc_mus-nacc-2 | Mouse Nucleus Accumbens FIB-SEM (jrc_mus-nacc-2) | https://doi.org/10.25378/janelia.24222898 | Public | 0 | 1 | 4 |
Mouse Nucleus Accumbens FIB-SEM Volume - jrc_mus-nacc-3 | Mouse Nucleus Accumbens FIB-SEM (jrc_mus-nacc-3) | https://doi.org/10.25378/janelia.24222913 | Public | 0 | 1 | 63 |
Mouse nucleus accumbens | Mouse Nucleus Accumbens FIB-SEM (jrc_mus-nacc-4) | https://doi.org/10.25378/janelia.24222988 | Public | 0 | 1 | 72 |
FIB-SEM of an Mbp-deficient shiverer mouse optic nerve | Mouse Optic Nerve Mbp Knockout FIB-SEM | https://doi.org/10.6019/EMPIAR-10907 | Public | 0 | 1 | 46 |
FIB-SEM of mouse optic nerve of an inducible conditional Mbp knock-out 16 weeks after induction | Mouse Optic Nerve Mbp Knockout FIB-SEM | https://doi.org/10.6019/EMPIAR-10906 | Public | 0 | 1 | 70 |
FIB-SEM of mouse optic nerve of an inducible conditional Mbp knock-out 26 weeks after induction | Mouse Optic Nerve Mbp Knockout FIB-SEM | https://doi.org/10.6019/EMPIAR-10908 | Public | 0 | 1 | 70 |
Mouse Optic Nerve FIB-SEM - Mag knockout (EMPIAR-11219) | Mouse Optic Nerve Plp1/Mag Knockout FIB-SEM | https://doi.org/10.6019/EMPIAR-11219 | Public | 0 | 1 | 67 |
Mouse Optic Nerve FIB-SEM - Mag knockout (EMPIAR-11220) | Mouse Optic Nerve Plp1/Mag Knockout FIB-SEM | https://doi.org/10.6019/EMPIAR-11220 | Public | 0 | 1 | 77 |
Mouse Optic Nerve FIB-SEM - Mag knockout (EMPIAR-11237) | Mouse Optic Nerve Plp1/Mag Knockout FIB-SEM | https://doi.org/10.6019/EMPIAR-11237 | Public | 0 | 1 | 98 |
Mouse Optic Nerve FIB-SEM - Plp1-null (EMPIAR-11214) | Mouse Optic Nerve Plp1/Mag Knockout FIB-SEM | https://doi.org/10.6019/EMPIAR-11214 | Public | 0 | 1 | 114 |
Mouse Optic Nerve FIB-SEM - Plp1-null (EMPIAR-11215) | Mouse Optic Nerve Plp1/Mag Knockout FIB-SEM | https://doi.org/10.6019/EMPIAR-11215 | Public | 0 | 1 | 96 |
Mouse Optic Nerve FIB-SEM - Plp1-null (EMPIAR-11216) | Mouse Optic Nerve Plp1/Mag Knockout FIB-SEM | https://doi.org/10.6019/EMPIAR-11216 | Public | 0 | 1 | 87 |
Mouse Optic Nerve FIB-SEM - Wild-type control (EMPIAR-11238) | Mouse Optic Nerve Plp1/Mag Knockout FIB-SEM | https://doi.org/10.6019/EMPIAR-11238 | Public | 0 | 1 | 115 |
Mouse Optic Nerve FIB-SEM - Wild-type control (EMPIAR-11240) | Mouse Optic Nerve Plp1/Mag Knockout FIB-SEM | https://doi.org/10.6019/EMPIAR-11240 | Public | 0 | 1 | 73 |
Mouse Optic Nerve OPC SBF-SEM Series | Mouse Optic Nerve SBF-SEM | https://doi.org/10.17632/smkd8cd8mk | Public | 0 | 9 | 3,160 |
Newborn Mouse Optic Nerve SBF-SEM ROI 00-1 to 00-3 | Mouse Optic Nerve SBF-SEM | https://doi.org/10.17632/6pf5fhzgwg | Public | 0 | 3 | 960 |
Newborn Mouse Optic Nerve SBF-SEM ROI 00-3 | Mouse Optic Nerve SBF-SEM | https://doi.org/10.17632/wbbk78nc7f | Public | 0 | 1 | 400 |
Newborn Mouse Optic Nerve SBF-SEM ROI 01-1 | Mouse Optic Nerve SBF-SEM | https://doi.org/10.17632/5955942vc3 | Public | 0 | 1 | 400 |
Isolated murine pancreatic islets | Mouse Pancreatic Islet FIB-SEM | https://doi.org/10.25378/janelia.13114499 | Public | 0 | 1 | 400 |
Isolated murine pancreatic islets - jrc_mus-pancreas-2 | Mouse Pancreatic Islet FIB-SEM Low Glucose | https://doi.org/10.25378/janelia.19196540 | Public | 0 | 1 | 411 |
Isolated murine pancreatic islets - jrc_mus-pancreas-3 | Mouse Pancreatic Islet FIB-SEM Low Glucose | https://doi.org/10.25378/janelia.19196585 | Public | 0 | 1 | 200 |
Identifying long-range synaptic inputs using genetically encoded labels and volume electron microscopy | Mouse Periaqueductal Gray dAPEX2 Synaptic-Input FIB-SEM | https://doi.org/10.6019/EMPIAR-10883 | Public | 0 | 6 | 461 |
Bock 2011 Mouse Visual Cortex ssTEM | Mouse Primary Visual Cortex ssTEM | https://doi.org/10.60533/BOSS-2011-K12H | Public | 0 | 1 | 785 |
Mouse retina outer plexiform layer FIB-SEM volumes (EM1, EM2) | Mouse Retina Outer Plexiform Layer FIB-SEM | https://doi.org/10.60533/BOSS-2021-4MZE | Public | 0 | 2 | 211 |
Mouse retina SBEM volume (100527_k0563) | Mouse Retina SBF-SEM (Briggman 2011) | https://webknossos.org/datasets/100527_k0563-5a7c737448d7a73cea3c83aa/view | Public | 0 | 1 | 107 |
Mouse retina 110629_k0725 SBEM volume | Mouse Retina SBF-SEM (Ding 2016) | https://webknossos.org/datasets/110629_k0725-5c98db84010000b02339b49b/view | Public | 0 | 1 | 277 |
Mouse Retina e2006 SBEM Volume | Mouse Retina SBF-SEM (Helmstaedter 2013) | https://webknossos.org/datasets/e2006-5a7c737448d7a73cea3c83ae/view | Public | 0 | 1 | 186 |
Automated quantification of photoreceptor outer segments in developing and degenerating retinas on microscopy images across scales | Mouse Retinal Photoreceptor Outer Segment TEM | https://doi.org/10.6019/S-BIAD1078 | Public | 87 | 0 | 1,065 |
Mouse S1 Cortex SBEM Demo Cutout | Mouse S1 Cortex SBF-SEM Demo | https://webknossos.org/datasets/2012-09-28_ex145_07x2_demo-5a7c737448d7a73cea3c83a8/view | Public | 0 | 1 | 75 |
Mouse salivary gland FIB-SEM volume (jrc_mus-salivary-1) | Mouse Salivary Gland FIB-SEM | https://open.quiltdata.com/b/janelia-cosem-datasets/tree/jrc_mus-salivary-1/ | Public | 0 | 1 | 400 |
Mouse skeletal muscle FIB-SEM volume (jrc_mus-skel-muscle-1) | Mouse Skeletal Muscle FIB-SEM | https://openorganelle.janelia.org/datasets/jrc_mus-skel-muscle-1 | Public | 0 | 1 | 400 |
Focused Ion Beam-Scanning Electron Microscopy of mitochondrial reticulum in murine skeletal muscle | Mouse Skeletal Muscle Mitochondrial Reticulum FIB-SEM | https://doi.org/10.6019/EMPIAR-10070 | Public | 0 | 1 | 53 |
Mouse skin FIB-SEM volume (jrc_mus-skin-2a) | Mouse Skin FIB-SEM | https://openorganelle.janelia.org/datasets/jrc_mus-skin-2a | Public | 0 | 1 | 308 |
L4 Mouse Cortex SBEM Volume - L4MouseCortex | Mouse Somatosensory Cortex Layer 4 SBF-SEM | https://webknossos.org/datasets/L4MouseCortex-63f72eb20100000f029408c0/view | Public | 0 | 1 | 96 |
L4 Mouse Cortex SBEM Volume - sample cutout | Mouse Somatosensory Cortex Layer 4 SBF-SEM | https://webknossos.org/datasets/l4_sample-5fa015dc0100007c004f80cc/view | Public | 0 | 1 | 0 |
L4 Mouse Somatosensory Cortex SBEM Volume - ROI2017 | Mouse Somatosensory Cortex Layer 4 SBF-SEM | https://webknossos.org/datasets/2012-09-28_ex145_07x2_ROI2017-5da84e9401000018006d210b/view | Public | 0 | 1 | 400 |
L4 Mouse Somatosensory Cortex SBEM Volume - ROI2017 connectome | Mouse Somatosensory Cortex Layer 4 SBF-SEM | https://webknossos.org/datasets/2012-09-28_ex145_07x2_ROI2017_connectome-5de003880100001b0086553b/view | Public | 0 | 1 | 400 |
Mouse spermatotubule ATUM-SEM serial sections (EMPIAR-12157) | Mouse Spermatotubule SEM | https://doi.org/10.6019/EMPIAR-12157 | Public | 0 | 1 | 281 |
Mouse Spinal Cord FIB-SEM Volume - Atl1KI/Reep1-KO mutant | Mouse Spinal Cord Hereditary Spastic Paraplegia FIB-SEM | https://doi.org/10.25378/janelia.20134979 | Public | 0 | 1 | 400 |
Mouse Spinal Cord FIB-SEM Volume - Wild-type | Mouse Spinal Cord Hereditary Spastic Paraplegia FIB-SEM | https://doi.org/10.25378/janelia.20134574 | Public | 0 | 1 | 263 |
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