Dataset
stringlengths
13
214
Experiment
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14
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Dataset DOI / URL
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32
128
Grouping
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3 values
2D images
int64
0
5.2k
3D acquisitions
int64
0
358
Training tiles
int64
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17.6k
Mouse Organ of Corti Cochlea SBF-SEM - 200um Subvolume
Mouse Cochlea SBF-SEM
https://webknossos.org/datasets/HuaLab-CBA-mice-cochlea-mid-7w-200um-603df5810100001a0045ca5e/view
Public
0
1
402
Mouse Ventral Cochlear Nucleus SBF-SEM Volume
Mouse Cochlear Nucleus SBF-SEM
https://doi.org/10.60533/boss-2023-yw23
Public
0
1
320
Conjugate electron microscopy and array tomography
Mouse Cortex Conjugate Array Tomography
https://doi.org/10.60533/BOSS-2015-EJSN
Public
0
3
202
SmartEM Mouse Cortex 10x10 Fused EM Volume
Mouse Cortex SEM
https://doi.org/10.60533/boss-2023-4w35
Public
0
1
199
Mouse Anterior Cingulate Cortex (ACC) SBEM Volume
Mouse Cortical Areas SBF-SEM
https://webknossos.org/datasets/JO_ACC_Z_straightenedPosthoc-5c1cd43801000026708c2783/view
Public
0
1
273
Mouse Lateral Parietal Association (LPtA) SBEM Volume
Mouse Cortical Areas SBF-SEM
https://webknossos.org/datasets/2016-05-26_FD0144-2_v2s2s_full-5c1ede340100007c838c3579/view
Public
0
1
6
Mouse Posterior Parietal Cortex (PPC) SBEM Volume
Mouse Cortical Areas SBF-SEM
https://webknossos.org/datasets/2017-04-03_ppcAK99_76x79-5c1cd439010000e66f8c2786/view
Public
0
1
151
Mouse Posterior Parietal Cortex (PPC-2) SBEM Volume
Mouse Cortical Areas SBF-SEM
https://webknossos.org/datasets/AK_CorrelativeExperiment06469_P57_st003_st004-5c1cd4380100004f6f8c2784/view
Public
0
1
400
Mouse Primary Somatosensory Cortex (S1) SBEM Volume
Mouse Cortical Areas SBF-SEM
https://webknossos.org/datasets/2012-11-23_ex144_st08x2New-5c1cd439010000e66f8c2787/view
Public
0
1
400
Mouse Secondary Visual Cortex (V2) SBEM Volume
Mouse Cortical Areas SBF-SEM
https://webknossos.org/datasets/V2_102_l23_ak_straightenedPosthoc-5c1cd4380100004f6f8c2785/view
Public
0
1
398
Mouse Cremaster Endothelial Cell CLXEM
Mouse Cremaster Endothelial Cell SBF-SEM
https://doi.org/10.6019/EMPIAR-11958
Public
0
1
178
Cytotoxic T Lymphocyte Attacking ID8 Ovarian Cancer Cell - jrc_ctl-id8-2
Mouse Cytotoxic T Lymphocyte Attacking Ovarian Cancer Cell FIB-SEM
https://doi.org/10.6084/m9.figshare.14447541
Public
0
1
537
Cytotoxic T Lymphocyte Attacking ID8 Ovarian Cancer Cell - jrc_ctl-id8-3
Mouse Cytotoxic T Lymphocyte Attacking Ovarian Cancer Cell FIB-SEM
https://doi.org/10.6084/m9.figshare.14447562
Public
0
1
266
Cytotoxic T Lymphocyte Attacking ID8 Ovarian Cancer Cell - jrc_ctl-id8-4
Mouse Cytotoxic T Lymphocyte Attacking Ovarian Cancer Cell FIB-SEM
https://doi.org/10.6084/m9.figshare.14447565
Public
0
1
299
Cytotoxic T Lymphocyte Attacking ID8 Ovarian Cancer Cell - jrc_ctl-id8-5
Mouse Cytotoxic T Lymphocyte Attacking Ovarian Cancer Cell FIB-SEM
https://doi.org/10.6084/m9.figshare.14447568
Public
0
1
209
Killer T-Cell Attacking Ovarian Cancer Cell
Mouse Cytotoxic T Lymphocyte Attacking Ovarian Carcinoma FIB-SEM
https://doi.org/10.25378/janelia.13114454
Public
0
1
400
Mouse deep nuclei (jrc_mus-cerebellum-4)
Mouse Deep Cerebellar Nuclei FIB-SEM
https://doi.org/10.25378/janelia.28754318
Public
0
1
165
Mouse deep nuclei (jrc_mus-cerebellum-5)
Mouse Deep Cerebellar Nuclei FIB-SEM
https://doi.org/10.25378/janelia.28754696
Public
0
1
261
3D FIB/SEM Imaging of the Molecular Layer of the Mouse Dentate Gyrus
Mouse Dentate Gyrus Astrocyte Leaflet FIB-SEM
https://doi.org/10.6019/EMPIAR-12557
Public
0
5
395
Meissner Nerve-Injury Digit Skin Volume
Mouse Digit Skin Meissner Corpuscle Nerve Injury SBF-SEM
https://webknossos.org/datasets/Meissner_SNI_1_VG-2021-10-15-sni1-align2-621e2194010000a1005dcdc9/view
Public
0
1
400
Meissner Sham Digit Skin Volume
Mouse Digit Skin Meissner Corpuscle Nerve Injury SBF-SEM
https://webknossos.org/datasets/Meissner_Sham_1_VG-2021-10-15-sham1-align2-621e215801000011015dcdc8/view
Public
0
1
261
Mouse dorsal striatum (jrc_mus-dorsal-striatum)
Mouse Dorsal Striatum FIB-SEM (jrc_mus-dorsal-striatum)
https://doi.org/10.25378/janelia.24222688
Public
0
1
14
Mouse dorsal striatum (jrc_mus-dorsal-striatum-2)
Mouse Dorsal Striatum FIB-SEM (jrc_mus-dorsal-striatum-2)
https://doi.org/10.25378/janelia.28754705
Public
0
1
400
Mouse Duodenum FIB-SEM Volume
Mouse Duodenum FIB-SEM
https://openorganelle.janelia.org/datasets/jrc_mus-duodenum-1a
Public
0
1
0
FIB-SEM of 2-cell-stage like cells (2CLC) in mouse embryonic stem cells (mESC)
Mouse ESC-Derived 2-Cell-Like Cell FIB-SEM
https://doi.org/10.6019/EMPIAR-13260
Public
0
2
155
Mouse Epididymis FIB-SEM Volume - jrc_mus-epididymis-1
Mouse Epididymis FIB-SEM (jrc_mus-epididymis-1)
https://doi.org/10.25378/janelia.22190377
Public
0
1
141
Mouse Epididymis FIB-SEM Volume - jrc_mus-epididymis-2
Mouse Epididymis FIB-SEM (jrc_mus-epididymis-2)
https://doi.org/10.25378/janelia.23407907
Public
0
1
142
WDR35 Periciliary Vesicle Tomograms (Figure 7 source data)
Mouse Fibroblast Wdr35 Periciliary Vesicle ET
https://doi.org/10.5061/dryad.m37pvmd33
Public
0
5
51
GT1-7 FIB-SEM Treatment Series
Mouse GT1-7 Neuron Spermidine Autophagy FIB-SEM
https://doi.org/10.6019/EMPIAR-10946
Public
0
6
455
Electron tomography of mitochondria from adult and aged mice hearts
Mouse Heart Mitochondria ET
https://doi.org/10.6019/EMPIAR-13004
Public
0
1
13
Mouse Hemostatic Plug SBF-SEM Volumes
Mouse Hemostatic Plug SBF-SEM
https://doi.org/10.6019/EMPIAR-13192
Public
0
6
1,971
Three-dimensional nanostructure of an intact microglia cell
Mouse Hippocampal Microglia SBF-SEM
https://doi.org/10.6019/EMPIAR-10201
Public
0
2
232
Synapses in transmission electron micrographs
Mouse Hippocampal Synapse TEM
https://doi.org/10.5281/zenodo.14236382
Public
13
0
167
Mouse Hippocampus CA1 eFIB-SEM Volume - jrc_mus-hippocampus-2
Mouse Hippocampus CA1 FIB-SEM
https://doi.org/10.25378/janelia.28894697
Public
0
1
400
Mouse Hippocampus CA1 eFIB-SEM Volume - jrc_mus-hippocampus-3
Mouse Hippocampus CA1 FIB-SEM
https://doi.org/10.25378/janelia.28895000
Public
0
1
400
FIB-SEM datasets of hippocampal neurons from WT and FAM92A1 knockout mice
Mouse Hippocampus FAM92A1 Knockout FIB-SEM
https://doi.org/10.6019/EMPIAR-12041
Public
0
2
93
Mouse Kidney FIB-SEM Volume
Mouse Kidney FIB-SEM (jrc_mus-kidney)
https://doi.org/10.25378/janelia.16913035
Public
0
1
400
Mouse Kidney FIB-SEM Volume
Mouse Kidney FIB-SEM (jrc_mus-kidney-2)
https://doi.org/10.25378/janelia.23411009
Public
0
1
400
Mouse Kidney Glomerulus FIB-SEM Volume
Mouse Kidney Glomerulus FIB-SEM
https://doi.org/10.25378/janelia.24164004
Public
0
1
289
Mouse Lateral Geniculate Nucleus SBEM Stacks
Mouse Lateral Geniculate Nucleus SBF-SEM
https://doi.org/10.60533/BOSS-2023-3TJJ
Public
0
2
800
Mouse Liver Acinus FIB-SEM Volume - jrc_mus-liver-zon-2
Mouse Liver Acinus FIB-SEM
https://doi.org/10.25378/janelia.24135486
Public
0
1
400
Mouse Liver Acinus Zone 1 FIB-SEM Volume - jrc_mus-liver-zon-1
Mouse Liver Acinus FIB-SEM (Zone 1)
https://doi.org/10.25378/janelia.24128700
Public
0
1
383
Parlakgul 2022 Mouse Liver FIB-SEM
Mouse Liver FIB-SEM (Parlakgul 2022)
https://doi.org/10.6019/EMPIAR-10791
Public
0
4
1,526
Mouse Liver FIB-SEM Volume
Mouse Liver FIB-SEM (jrc_mus-liver)
https://doi.org/10.25378/janelia.16913047
Public
0
1
400
Mouse Liver FIB-SEM Volume - jrc_mus-liver-2
Mouse Liver FIB-SEM (jrc_mus-liver-2)
https://doi.org/10.25378/janelia.23411426
Public
0
1
400
Parlakgul 2024 Mouse Liver FIB-SEM Volumes
Mouse Liver Hepatic ER and Mitochondria FIB-SEM
https://doi.org/10.6019/EMPIAR-12017
Public
0
6
2,400
Data from: Hepatic steatosis induced by nicotine plus Coca-Cola™ is prevented by nicotinamide riboside (NR)
Mouse Liver Nicotine & Coca-Cola Steatosis TEM
https://doi.org/10.5061/dryad.g1jwstqx7
Public
15
0
0
Ventilation-induced changes in pulmonary microarchitecture and gene-expression profiles in SP-B deficient mice
Mouse Lung Alveolar Tight Junction FIB-SEM
https://doi.org/10.5281/zenodo.16782623
Public
0
2
139
Mouse Lung FIB-SEM Volume
Mouse Lung FIB-SEM
https://openorganelle.janelia.org/datasets/jrc_mus-lung-2a
Public
0
1
0
Mouse Guard Hair Follicle FIB-SEM
Mouse Mechanosensory End Organs FIB-SEM
https://doi.org/10.25378/janelia.23969061
Public
0
1
378
Mouse Meissner Corpuscle FIB-SEM - Double-innervated
Mouse Mechanosensory End Organs FIB-SEM
https://doi.org/10.25378/janelia.23969109
Public
0
1
121
Mouse Meissner Corpuscle FIB-SEM - Single-innervated
Mouse Mechanosensory End Organs FIB-SEM
https://doi.org/10.25378/janelia.23969076
Public
0
1
400
Mouse Pacinian Corpuscle FIB-SEM
Mouse Mechanosensory End Organs FIB-SEM
https://doi.org/10.25378/janelia.23969112
Public
0
1
400
K0068_05 Mouse mPFC SBEM Volume
Mouse Medial Prefrontal Cortex SBF-SEM
https://webknossos.org/datasets/K0068_05-6037e03401000099003877e4/view
Public
0
1
300
Efficient cell-wide mapping of mitochondria in electron microscopic volumes using webKnossos
Mouse Multi-Organ mito-SegEM SBF-SEM
https://doi.org/10.6019/EMPIAR-12535
Public
0
3
1,200
Electron tomography - Myotubes:Fam134bKO and WT
Mouse Myotube FAM134B ER Electron Tomography
https://doi.org/10.6019/EMPIAR-12473
Public
0
2
6
Kasthuri Mouse Neocortex Volume
Mouse Neocortex SEM
https://webknossos.org/datasets/kasthuri2011-5c42004001000096156f49d8/view
Public
0
1
343
Performing Correlative Light and Electron Microscopy to reveal the structural organization and location of alpha-synuclein aggregation hotspots inside the neuron.
Mouse Neuron Alpha-Synuclein Aggregation
https://doi.org/10.6019/EMPIAR-11066
Public
0
7
609
Dopamine Axon Connectome Volumes (NAc/VTA, saline and cocaine)
Mouse Nucleus Accumbens Dopamine Axon Cocaine SEM
https://doi.org/10.60533/BOSS-2021-YA04
Public
0
13
5,200
Mouse nucleus accumbens
Mouse Nucleus Accumbens FIB-SEM (jrc_mus-nacc-1)
https://doi.org/10.25378/janelia.27075514
Public
0
1
6
Mouse Nucleus Accumbens FIB-SEM Volume - jrc_mus-nacc-2
Mouse Nucleus Accumbens FIB-SEM (jrc_mus-nacc-2)
https://doi.org/10.25378/janelia.24222898
Public
0
1
4
Mouse Nucleus Accumbens FIB-SEM Volume - jrc_mus-nacc-3
Mouse Nucleus Accumbens FIB-SEM (jrc_mus-nacc-3)
https://doi.org/10.25378/janelia.24222913
Public
0
1
63
Mouse nucleus accumbens
Mouse Nucleus Accumbens FIB-SEM (jrc_mus-nacc-4)
https://doi.org/10.25378/janelia.24222988
Public
0
1
72
FIB-SEM of an Mbp-deficient shiverer mouse optic nerve
Mouse Optic Nerve Mbp Knockout FIB-SEM
https://doi.org/10.6019/EMPIAR-10907
Public
0
1
46
FIB-SEM of mouse optic nerve of an inducible conditional Mbp knock-out 16 weeks after induction
Mouse Optic Nerve Mbp Knockout FIB-SEM
https://doi.org/10.6019/EMPIAR-10906
Public
0
1
70
FIB-SEM of mouse optic nerve of an inducible conditional Mbp knock-out 26 weeks after induction
Mouse Optic Nerve Mbp Knockout FIB-SEM
https://doi.org/10.6019/EMPIAR-10908
Public
0
1
70
Mouse Optic Nerve FIB-SEM - Mag knockout (EMPIAR-11219)
Mouse Optic Nerve Plp1/Mag Knockout FIB-SEM
https://doi.org/10.6019/EMPIAR-11219
Public
0
1
67
Mouse Optic Nerve FIB-SEM - Mag knockout (EMPIAR-11220)
Mouse Optic Nerve Plp1/Mag Knockout FIB-SEM
https://doi.org/10.6019/EMPIAR-11220
Public
0
1
77
Mouse Optic Nerve FIB-SEM - Mag knockout (EMPIAR-11237)
Mouse Optic Nerve Plp1/Mag Knockout FIB-SEM
https://doi.org/10.6019/EMPIAR-11237
Public
0
1
98
Mouse Optic Nerve FIB-SEM - Plp1-null (EMPIAR-11214)
Mouse Optic Nerve Plp1/Mag Knockout FIB-SEM
https://doi.org/10.6019/EMPIAR-11214
Public
0
1
114
Mouse Optic Nerve FIB-SEM - Plp1-null (EMPIAR-11215)
Mouse Optic Nerve Plp1/Mag Knockout FIB-SEM
https://doi.org/10.6019/EMPIAR-11215
Public
0
1
96
Mouse Optic Nerve FIB-SEM - Plp1-null (EMPIAR-11216)
Mouse Optic Nerve Plp1/Mag Knockout FIB-SEM
https://doi.org/10.6019/EMPIAR-11216
Public
0
1
87
Mouse Optic Nerve FIB-SEM - Wild-type control (EMPIAR-11238)
Mouse Optic Nerve Plp1/Mag Knockout FIB-SEM
https://doi.org/10.6019/EMPIAR-11238
Public
0
1
115
Mouse Optic Nerve FIB-SEM - Wild-type control (EMPIAR-11240)
Mouse Optic Nerve Plp1/Mag Knockout FIB-SEM
https://doi.org/10.6019/EMPIAR-11240
Public
0
1
73
Mouse Optic Nerve OPC SBF-SEM Series
Mouse Optic Nerve SBF-SEM
https://doi.org/10.17632/smkd8cd8mk
Public
0
9
3,160
Newborn Mouse Optic Nerve SBF-SEM ROI 00-1 to 00-3
Mouse Optic Nerve SBF-SEM
https://doi.org/10.17632/6pf5fhzgwg
Public
0
3
960
Newborn Mouse Optic Nerve SBF-SEM ROI 00-3
Mouse Optic Nerve SBF-SEM
https://doi.org/10.17632/wbbk78nc7f
Public
0
1
400
Newborn Mouse Optic Nerve SBF-SEM ROI 01-1
Mouse Optic Nerve SBF-SEM
https://doi.org/10.17632/5955942vc3
Public
0
1
400
Isolated murine pancreatic islets
Mouse Pancreatic Islet FIB-SEM
https://doi.org/10.25378/janelia.13114499
Public
0
1
400
Isolated murine pancreatic islets - jrc_mus-pancreas-2
Mouse Pancreatic Islet FIB-SEM Low Glucose
https://doi.org/10.25378/janelia.19196540
Public
0
1
411
Isolated murine pancreatic islets - jrc_mus-pancreas-3
Mouse Pancreatic Islet FIB-SEM Low Glucose
https://doi.org/10.25378/janelia.19196585
Public
0
1
200
Identifying long-range synaptic inputs using genetically encoded labels and volume electron microscopy
Mouse Periaqueductal Gray dAPEX2 Synaptic-Input FIB-SEM
https://doi.org/10.6019/EMPIAR-10883
Public
0
6
461
Bock 2011 Mouse Visual Cortex ssTEM
Mouse Primary Visual Cortex ssTEM
https://doi.org/10.60533/BOSS-2011-K12H
Public
0
1
785
Mouse retina outer plexiform layer FIB-SEM volumes (EM1, EM2)
Mouse Retina Outer Plexiform Layer FIB-SEM
https://doi.org/10.60533/BOSS-2021-4MZE
Public
0
2
211
Mouse retina SBEM volume (100527_k0563)
Mouse Retina SBF-SEM (Briggman 2011)
https://webknossos.org/datasets/100527_k0563-5a7c737448d7a73cea3c83aa/view
Public
0
1
107
Mouse retina 110629_k0725 SBEM volume
Mouse Retina SBF-SEM (Ding 2016)
https://webknossos.org/datasets/110629_k0725-5c98db84010000b02339b49b/view
Public
0
1
277
Mouse Retina e2006 SBEM Volume
Mouse Retina SBF-SEM (Helmstaedter 2013)
https://webknossos.org/datasets/e2006-5a7c737448d7a73cea3c83ae/view
Public
0
1
186
Automated quantification of photoreceptor outer segments in developing and degenerating retinas on microscopy images across scales
Mouse Retinal Photoreceptor Outer Segment TEM
https://doi.org/10.6019/S-BIAD1078
Public
87
0
1,065
Mouse S1 Cortex SBEM Demo Cutout
Mouse S1 Cortex SBF-SEM Demo
https://webknossos.org/datasets/2012-09-28_ex145_07x2_demo-5a7c737448d7a73cea3c83a8/view
Public
0
1
75
Mouse salivary gland FIB-SEM volume (jrc_mus-salivary-1)
Mouse Salivary Gland FIB-SEM
https://open.quiltdata.com/b/janelia-cosem-datasets/tree/jrc_mus-salivary-1/
Public
0
1
400
Mouse skeletal muscle FIB-SEM volume (jrc_mus-skel-muscle-1)
Mouse Skeletal Muscle FIB-SEM
https://openorganelle.janelia.org/datasets/jrc_mus-skel-muscle-1
Public
0
1
400
Focused Ion Beam-Scanning Electron Microscopy of mitochondrial reticulum in murine skeletal muscle
Mouse Skeletal Muscle Mitochondrial Reticulum FIB-SEM
https://doi.org/10.6019/EMPIAR-10070
Public
0
1
53
Mouse skin FIB-SEM volume (jrc_mus-skin-2a)
Mouse Skin FIB-SEM
https://openorganelle.janelia.org/datasets/jrc_mus-skin-2a
Public
0
1
308
L4 Mouse Cortex SBEM Volume - L4MouseCortex
Mouse Somatosensory Cortex Layer 4 SBF-SEM
https://webknossos.org/datasets/L4MouseCortex-63f72eb20100000f029408c0/view
Public
0
1
96
L4 Mouse Cortex SBEM Volume - sample cutout
Mouse Somatosensory Cortex Layer 4 SBF-SEM
https://webknossos.org/datasets/l4_sample-5fa015dc0100007c004f80cc/view
Public
0
1
0
L4 Mouse Somatosensory Cortex SBEM Volume - ROI2017
Mouse Somatosensory Cortex Layer 4 SBF-SEM
https://webknossos.org/datasets/2012-09-28_ex145_07x2_ROI2017-5da84e9401000018006d210b/view
Public
0
1
400
L4 Mouse Somatosensory Cortex SBEM Volume - ROI2017 connectome
Mouse Somatosensory Cortex Layer 4 SBF-SEM
https://webknossos.org/datasets/2012-09-28_ex145_07x2_ROI2017_connectome-5de003880100001b0086553b/view
Public
0
1
400
Mouse spermatotubule ATUM-SEM serial sections (EMPIAR-12157)
Mouse Spermatotubule SEM
https://doi.org/10.6019/EMPIAR-12157
Public
0
1
281
Mouse Spinal Cord FIB-SEM Volume - Atl1KI/Reep1-KO mutant
Mouse Spinal Cord Hereditary Spastic Paraplegia FIB-SEM
https://doi.org/10.25378/janelia.20134979
Public
0
1
400
Mouse Spinal Cord FIB-SEM Volume - Wild-type
Mouse Spinal Cord Hereditary Spastic Paraplegia FIB-SEM
https://doi.org/10.25378/janelia.20134574
Public
0
1
263