ClarusC64's picture
Update README.md
7e9c468 verified
metadata
language: en
license: mit
pretty_name: AlphaFold Misinterpretation Classifier v2
task_categories:
  - text-classification
  - text-generation
tags:
  - protein
  - alphafold
  - structural-biology
  - uncertainty
  - evaluation
size_categories:
  - n<1K

AlphaFold Misinterpretation Classifier

Purpose
Detect common ways people overclaim from AlphaFold outputs.

Input fields

  • protein_context
  • alphafold_signals
  • proposed_inference

Required output
Return one JSON object

  • misinterpretation
    yes or no
  • error_type
    must match allowed list
  • correction
    one sentence

Allowed error_type values

  • no_error
  • low_confidence_region_overtrust
  • interdomain_orientation_overclaim
  • disorder_as_structure
  • loop_position_overtrust
  • complex_negation_from_monomer
  • interface_overconfidence
  • cofactor_absence_misread
  • low_complexity_as_domain

Scoring

  • misinterpretation_accuracy
  • error_type_accuracy
  • correction_similarity
  • format_pass_rate

Run scoring
python scorer.py --predictions predictions.jsonl --test_csv data/test.csv