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--- |
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language: en |
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license: mit |
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pretty_name: AlphaFold Misinterpretation Classifier v2 |
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task_categories: |
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- text-classification |
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- text-generation |
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tags: |
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- protein |
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- alphafold |
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- structural-biology |
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- uncertainty |
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- evaluation |
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size_categories: |
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- n<1K |
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--- |
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AlphaFold Misinterpretation Classifier |
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Purpose |
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Detect common ways people overclaim from AlphaFold outputs. |
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Input fields |
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- protein_context |
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- alphafold_signals |
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- proposed_inference |
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Required output |
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Return one JSON object |
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- misinterpretation |
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yes or no |
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- error_type |
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must match allowed list |
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- correction |
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one sentence |
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Allowed error_type values |
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- no_error |
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- low_confidence_region_overtrust |
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- interdomain_orientation_overclaim |
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- disorder_as_structure |
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- loop_position_overtrust |
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- complex_negation_from_monomer |
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- interface_overconfidence |
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- cofactor_absence_misread |
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- low_complexity_as_domain |
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Scoring |
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- misinterpretation_accuracy |
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- error_type_accuracy |
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- correction_similarity |
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- format_pass_rate |
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Run scoring |
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python scorer.py --predictions predictions.jsonl --test_csv data/test.csv |
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