| UniProt search (6/17/2025): | |
| (cc_scl_term_exp:SL-0086) OR (cc_scl_term_exp:SL-0191) OR (cc_scl_term_exp:SL-0243) OR (cc_scl_term_exp:SL-0162) OR (cc_scl_term_exp:SL-0173) OR (cc_scl_term_exp:SL-0209) OR (cc_scl_term_exp:SL-0095) OR (cc_scl_term_exp:SL-0272) OR (cc_scl_term_exp:SL-0158) OR (cc_scl_term_exp:SL-0132) OR (cc_scl_term_exp:SL-0204) OR (cc_scl_term_exp:SL-0049) OR (cc_scl_term_exp:SL-0041) | |
| Filtered for specific subcellular location terms: | |
| (1) Cytoplasm | |
| (2) Nucleus | |
| (3) Secreted | |
| (4) Membrane | |
| (5) Mitochondria | |
| (6) Plastid | |
| (7) Endoplasmic Reticulum | |
| (8) Vacuole | |
| (9) Lysosome | |
| (10) Golgi Apparatus | |
| (11) Peroxisome | |
| (12) Chloroplast | |
| (13) Cell Wall | |
| Curation steps: | |
| - Filtered for sequence length >=20 and <=2048 | |
| - CD-HIT using Docker at 80% similarity threshold and n=5 | |
| - Keep representative sequences | |
| - Parse subcellular locations into a clean list of labels (remove notes & ECO numbers) | |
| - Keep only examples with label in the location map (above) | |
| - Remove duplicates | |
| - Unique label list (assign 0 or 1 to a bitstring), convert to vector | |
| - Shuffle and split randomly into train, valid (1k), and test (1k) | |
| --- | |
| dataset_info: | |
| features: | |
| - name: labels | |
| dtype: string | |
| - name: seqs | |
| dtype: string | |
| splits: | |
| - name: train | |
| num_bytes: 15913904 | |
| num_examples: 32638 | |
| - name: valid | |
| num_bytes: 472742 | |
| num_examples: 1000 | |
| - name: test | |
| num_bytes: 484576 | |
| num_examples: 1000 | |
| download_size: 15433449 | |
| dataset_size: 16871222 | |
| configs: | |
| - config_name: default | |
| data_files: | |
| - split: train | |
| path: data/train-* | |
| - split: valid | |
| path: data/valid-* | |
| - split: test | |
| path: data/test-* | |
| --- | |