IdA
stringlengths 6
21
| IdB
stringlengths 6
21
| labels
int64 0
2
| mechanism
stringclasses 40
values | effect
stringclasses 10
values | score
float64 0.1
0.99
⌀ | sentence
stringlengths 10
1.63k
⌀ | signor_id
stringlengths 12
14
|
|---|---|---|---|---|---|---|---|
Q08211
|
Q9BRS8
| 2
|
binding
|
up-regulates activity
| 0.41
|
La ribonucleoprotein domain family member 6 (LARP6) is the protein that binds 5' SL with high affinity and specificity and coordinates their translation. Here we show that RNA helicase A (RHA) is tethered to the 5' SL of collagen mRNAs by interaction with the C-terminal domain of LARP6.
|
SIGNOR-273500
|
Q9BYP7
|
P55011
| 1
|
phosphorylation
|
up-regulates activity
| 0.525
|
We have shown that with-no-lysine kinase 3 (WNK3) possesses several properties that suggest it could be the Cl−/volume-sensitive regulatory kinase that, in association with protein phosphatases, reciprocally modifies the phosphorylation/dephosphorylation states of the SLC12 proteins and thus their activities|WNK3 activates NKCC1/2 and NCC and inhibits the KCCs
|
SIGNOR-264625
|
Q13188
|
Q9UL54
| 0
|
phosphorylation
|
up-regulates
| 0.274
|
In addition, the thousand-and-one (tao) amino acids kinase or taok13 has been shown to directly phosphorylate and activate hpo or mst1/2.
|
SIGNOR-201327
|
P06241
|
Q16620
| 2
|
binding
|
up-regulates
| 0.381
|
All these data suggest the involvement of fyn in the neurotrophin signal transduction pathways downstream of trkb. We investigated whether fyn is involved in the trk-dependent signal transduction pathways of neurotrophin. The fyn-src homology domain 2 (sh2) was observed to associate in vitro with the intracellular domain of trkb (icd-trkb).
|
SIGNOR-58424
|
O14757
|
O15151
| 1
|
phosphorylation
|
down-regulates activity
| 0.52
|
MDMX is a direct substrate for Chk1 and Chk2 in vitro. Phosphorylation of MDMX leads to increased binding to MDM2 and more efficient ubiquitination, providing an explanation for the enhanced degradation of MDMX after DNA damage. | Western blot showed that Chk1 modified S342 and S367, but with strong preference for S342.
|
SIGNOR-250770
|
Q92538
|
P68400
| 0
|
phosphorylation
|
down-regulates quantity by destabilization
| 0.2
|
We show that, in mitosis, GBF1 is phosphorylated on Ser292 and Ser297 by casein kinase-2 allowing recognition by the F-box protein βTrCP. GBF1 interaction with βTrCP recruits GBF1 to the SCFβTrCP ubiquitin ligase complex, triggering its degradation.
|
SIGNOR-277398
|
Q9BZL4
|
P54646
| 0
|
phosphorylation
|
down-regulates
| 0.259
|
Ampk-induced phosphorylation is necessary for ppp1r12c interaction with 14-3-3 and phosphorylation of myosin regulatory light chain. Both ampk activity and ppp1r12c phosphorylation are increased in mitotic cells and are important for mitosis completion. The interaction between ppp1r12c and 14-3-3_ may inactivate the ppp1r12c-containing phosphatase complex in vivo.
|
SIGNOR-195148
|
P05412
|
P98066
| 1
|
transcriptional regulation
|
up-regulates quantity by expression
| 0.308
|
Tumor necrosis factor (TNF)-stimulated gene 6 (TSG-6) encodes a protein expressed during inflammation. We have previously shown that transcription factors of the NF-IL6 and AP-1 families cooperatively modulate activation of the TSG-6 gene by TNF or interleukin 1 (IL-1) through a promoter region that contains an NF-IL6 site (-106 to -114) and an AP-1 element
|
SIGNOR-254052
|
P78352
|
Q9HCJ2
| 2
|
binding
|
up-regulates activity
| 0.365
|
A possible function for the NGL–PSD-95 interaction is to couple trans-synaptic adhesion events to the recruitment of PSD-95 and other PSD-95-associated postsynaptic proteins. PSD-95 and liprin-α may be key synaptic scaffolding proteins that couple trans-synaptic adhesions to the assembly of synaptic proteins/vesicles
|
SIGNOR-264050
|
P11473
|
O60315
| 0
|
transcriptional regulation
|
up-regulates quantity by expression
| 0.2
|
ZEB, a Krüppel-type transcription factor known to repress the transcription of several genes, binds to two sites within the VDR promoter and activates the transcription of this receptor in a cell-specific manner. Transfection of ZEB into SW620 colon carcinoma cells results in an up-regulation of the expression of endogenous VDR, confirming the role of ZEB in the transcriptional activation of the VDR gene.
|
SIGNOR-268954
|
P08754
|
P30556
| 2
|
binding
|
up-regulates activity
| 0.25
|
Here we systematically quantified ligand-induced interactions between 148 GPCRs and all 11 unique G alpha subunit C-termini. For each receptor, we probed chimeric G alpha subunit activation via a transforming growth factor-alpha (TGF alpha) shedding response in HEK293 cells lacking endogenous Gq/11- and G12/13- signaling. | We defined positive coupling if any member of the subfamily scored LogRAi ≥ -1 and negative coupling if all of the members scored LogRAi < -1 (Figure 3A-B). ROC analysis gives AUC = 0.78 (Figure S4A) when considering high-confidence known coupling data and suggested a threshold of LogRAi ≥ -1.0 for defining true couplings. | The score associated to this interaction has a LogRAi ≥ -1.0.
|
SIGNOR-256881
|
Q13144
|
P68400
| 0
|
phosphorylation
|
up-regulates activity
| 0.386
|
Two conserved sites (Ser712/713) are phosphorylated by casein kinase 2. They lie at the extreme C-terminus and are required for the interaction of eIF2Bepsilon with its substrate, eIF2, in vivo and for eIF2B activity in vitro.
|
SIGNOR-250859
|
P0C2W1
|
O15350
| 2
|
binding
|
down-regulates quantity by destabilization
| 0.597
|
The F-box protein FBXO45 promotes the proteasome-dependent degradation of p73.Importantly, SCFFBXO45 ubiquitylates p73 both in vivo and in vitro. Expression of Cul1 dominant negative mutant, but not Cul2, Cul3, Cul4 and Cul5 dominant negative mutants, increased p73 levels (Figure 1c) to an extent similar to that observed in the ts41 cell line at not permissive temperature, suggesting that a Cul1-associated activity is required for p73 protein stability.
|
SIGNOR-271876
|
P31269
|
O00470
| 2
|
binding
|
up-regulates activity
| 0.62
|
We now show that the Hoxa-9 protein physically interacts with Meis1 proteins. Hox proteins from the other AbdB-like paralogs, Hoxa-10, Hoxa-11, Hoxd-12, and Hoxb-13, also form DNA binding complexes with Meis1b. DNA binding complexes formed by Meis1 with Hox proteins dissociate much more slowly than DNA complexes with Meis1 alone, suggesting that Hox proteins stabilize the interactions of Meis1 proteins with their DNA targets.
|
SIGNOR-241162
|
Q12888
|
P06493
| 0
|
phosphorylation
|
down-regulates activity
| 0.599
|
Nuclear import of 53BP1 is required for proper localization of 53BP1 and maintenance of genome integrity. 53BP1 has a classical bipartite nuclear localization signal (NLS) of sequence 1666-GKRKLITSEEERSPAKRGRKS-1686. Ser1678 within the 53BP1 NLS can be phosphorylated by CDK1/cyclin B, and a phosphomimetic substitution of Ser1678 with aspartate has been shown to negatively regulate nuclear import of 53BP1.
|
SIGNOR-264412
|
P63000
|
P36897
| 0
| null |
up-regulates activity
| 0.28
|
Thus, TGF-_1 rapidly stimulates activity of both RhoA and Rac1 and this activation requires ALK5/T_RI kinase activity.
|
SIGNOR-227496
|
P17931
|
P42684
| 0
|
phosphorylation
|
up-regulates
| 0.2
|
The sh (src homology)3 domains of c-abl/arg bind to a p(80)gppsgp motif of gal3, and tyr79 and tyr118 are the major tyrosine phosphorylation sites. A consequence of this interaction and phosphorylation is the significant impairment of chaperone-mediated autophagy of gal3.
|
SIGNOR-163747
|
Q13464
|
Q14457
| 1
|
phosphorylation
|
up-regulates activity
| 0.415
|
Beclin1 is phosphorylated by ROCK1 at T119.
|
SIGNOR-278198
|
P11387
|
P06493
| 0
|
phosphorylation
|
up-regulates activity
| 0.349
|
In vitro kinase assays demonstrated that Ser(10) can be phosphorylated by casein kinase II, Ser(21) can be phosphorylated by protein kinase Calpha, and Ser(112) and Ser(394) can be phosphorylated by Cdk1.Collectively these results indicate that topo I is phosphorylated during mitosis at multiple sites, one of which enhances DNA relaxation activity in vitro and interaction with DNA in cells.
|
SIGNOR-276157
|
Q9UHD2
|
A7MCY6
| 0
|
relocalization
|
up-regulates activity
| 0.603
|
TBKBP1 recruits TBK1 to protein kinase C-theta (PKCθ) through a scaffold protein, CARD10. This enables PKCθ to phosphorylate TBK1 at Ser 716, a crucial step for TBK1 activation
|
SIGNOR-272469
|
Q04724
|
Q9UJU2
| 2
|
binding
|
down-regulates activity
| 0.689
|
Our data shows that Groucho/TLE repression requires two sites of interaction in LEF-1 and that a central, conserved amino acid sequence within the primary region (F S/T/P/xx y I/L/V) is critical.
|
SIGNOR-260109
|
Q14934
|
Q08209
| 0
|
dephosphorylation
|
up-regulates
| 0.566
|
Calcineurin directly dephosphorylates nfat resulting in the nuclear import of nfat.
|
SIGNOR-176379
|
Q16611
|
P99999
| 1
|
relocalization
|
up-regulates
| 0.566
|
Allosteric activation of bak induces its intramembranous oligomerization into a proposed pore for cytochrome c efflux
|
SIGNOR-105206
|
O14595
|
P84022
| 1
|
dephosphorylation
|
up-regulates activity
| 0.424
|
Dephosphorylation of Smad2/3 Linkers by SCP2 and SCP3|MAPK-mediated linker phosphorylation appears to have a dual role in Smad2/3 regulation. Mitogens and hyperactive Ras result in extracellular signal-regulated kinase (ERK)-mediated phosphorylation of Smad3 at Ser-204, Ser-208, and Thr-179 and of Smad2 at Ser-245/250/255 and Thr-220. Mutation of these sites increases the ability of Smad3 to activate target genes, suggesting that MAPK phosphorylation of Smad3 is inhibitory (11, 12). However, in contrast, ERK-dependent phosphorylation of Smad2 at Thr-8 enhances its transcriptional activity
|
SIGNOR-248293
|
P27361
|
P04049
| 1
|
phosphorylation
|
down-regulates activity
| 0.637
|
Here, we identify six residues of Raf-1 (S29, S43, S289, S296, S301, and S642) that become hyperphosphorylated in a manner coincident with Raf-1 inactivation. | Five of the identified sites are proline-directed targets of activated ERK, and phosphorylation of all six sites requires MEK signaling, indicating a negative feedback mechanism. Hyperphosphorylation of these six sites inhibits the Ras/Raf-1 interaction and desensitizes Raf-1 to additional stimuli.|FLAG-Raf-1 phosphorylated by activated ERK2
|
SIGNOR-143688
|
Q05513
|
P47712
| 1
|
phosphorylation
|
up-regulates activity
| 0.327
|
To further evaluate cPLA2 as a candidate substrate for PKCζ, we developed a custom antibody recognizing the cPLA2 T376 phosphorylation site. Specificity was validated in both serum starved/stimulated samples
|
SIGNOR-277518
|
P20908
|
P13497
| 0
|
cleavage
|
up-regulates activity
| 0.623
|
BMP-1 Can Efficiently Cleave Pro-α1(V) N-propeptides and Pro-α2(V) C-propeptides and Less Efficiently Cleave Pro-α1(V) C-propeptides in Vitro.NH2-terminal sequencing of an ∼35-kDa band in the BMP-1-treated material (N-α1(V), Fig. 3 B,lanes 2 and 3) showed it to correspond to the NH2-terminal portion of the pro-α1(V) N-propeptide previously shown to be cleaved in pro-α1(V)3 homotrimers by BMP-1 (39), whereas NH2-terminal sequencing of an ∼38-kDa band (C-α1(V)BMP-1, Fig. 3 B,lanes 2 and 3) showed it to correspond to pro-α1(V) C-propeptides cleaved between Asp-1594 and Asp-1595.
|
SIGNOR-256344
|
Q13347
|
P37173
| 2
|
binding
|
up-regulates
| 0.324
|
Another receptor-associated protein is trip-1, which interacts with and is phosphorylated by tbrii and contains five wd-40 repeats. The association of wd-40 repeat proteins may then allow them to play a role in signaling by the serine/threonine kinase receptors.
|
SIGNOR-60700
|
P61006
|
O43318
| 0
|
phosphorylation
|
up-regulates activity
| 0.252
|
In a screen for Rab8A kinases we identify TAK1 and MST3 kinases that can efficiently phosphorylate the Switch II residue Threonine72 (Thr72) in a similar manner as LRRK2 in vitro. |Overall our data suggests that the phosphorylation of Rab8A at Ser111 may influence Switch II-binding by regulators, thus disrupting interactions with its cognate GEF and moderately impairs its interaction with GAPs.|The antagonistic interplay between Ser111 phosphorylation and Thr72 phosphorylation is genetically concordant with how respective mutations in PINK1 and LRRK2 cause Parkinson’s disease
|
SIGNOR-260266
|
O15519
|
Q16539
| 0
|
phosphorylation
|
up-regulates
| 0.373
|
Here we demonstrate that m. tuberculosis?induced Tnf triggered reactive oxygen species?dependent Activation of ask1 and the tyrosine kinase c-abl (a000161) in mouse macrophages and that flips was phosphorylated on tyr211 and ser4 by c-abl and p38, respectively.
|
SIGNOR-187001
|
Q9NR28
|
O15392
| 2
|
binding
|
down-regulates
| 0.569
|
Diablo seem to function as a general iaps neutralizer by binding to these protein. Diablo promotes casp9 activation by binding to inhibitor of apoptosis proteins, iaps, and removing their inhibitory activity. mitochondrial survivin associated with smac/diablo, delaying its release.
|
SIGNOR-80212
|
Q8WV28
|
P43405
| 0
|
phosphorylation
|
up-regulates
| 0.806
|
The phosphorylation of multiple tyrosine residues not only amplifies plcgamma-mediated signaling but also supports 'cis'-mediated interaction between distinct signaling effectors within a large molecular complex.
|
SIGNOR-96044
|
Q6PIL6
|
Q9NZV8
| 1
|
relocalization
|
up-regulates activity
| 0.773
|
KChIP4 increased the current amplitude of Kv4.2, decelerated the inactivation, and accelerated the recovery from inactivation of Kv4.2. KChIP.is known to promote the translocation of Kv4.2 from the endoplasmic reticulum or Golgi to the cell surface
|
SIGNOR-269004
|
Q92786
|
P54646
| 0
|
phosphorylation
|
down-regulates quantity by destabilization
| 0.2
|
Furthermore, the Ser79 phosphorylation of PROX1 by AMPK enhances the recruitment of CUL4-DDB1 ubiquitin ligase to promote PROX1 degradation.
|
SIGNOR-277608
|
P42768
|
P60953
| 2
|
binding
|
up-regulates activity
| 0.957
|
Cdc42 can induce Arp2/3-mediated filopodia formation through the activation of WASp (Wiskott-Aldrich syndrome proteins) and neuronal N-WASp (Rohatgi et al., 1999). Similarly, Rac1-enhanced lamellipodia formation is related to Arp2/3 activation by the WAVE (WASP-family verprolin-homologous) complex
|
SIGNOR-261869
|
O14965
|
P06730
| 1
|
phosphorylation
|
up-regulates activity
| 0.278
|
In this study, we demonstrated for the first time that AURKA can phosphorylate and activate EIF4E.
|
SIGNOR-279495
|
Q96NX5
|
O43432
| 1
|
phosphorylation
|
up-regulates
| 0.2
|
Here we report that activity-dependent translational initiation in cultured rat hippocampal neurons is enhanced by camki-mediated phosphorylation of ser1156 in eukaryotic initiation factor eif4gii (4gii).
|
SIGNOR-197149
|
P04637
|
O96017
| 0
|
phosphorylation
|
up-regulates quantity by stabilization
| 0.791
|
Chk1/chk2 and atm/atr also phosphorylate the effector p53, increasing its stability.We Have demonstrated that the human homologs of the checkpoint kinases, chk1 and chk2/hcds1, phosphorylate at least three dna damage-inducible phosphorylation sites in p53.
|
SIGNOR-74831
|
P49760
|
P31749
| 0
|
phosphorylation
|
up-regulates
| 0.39
|
Akt directly binds to and phosphorylates clk2 on serine 34 and threonine 127, in vitro and in vivo.Our results suggest that akt activation controls cell survival to ionizing radiation by phosphorylating clk2, revealing an important regulatory mechanism required for promoting cell surviva
|
SIGNOR-167340
|
P63092
|
O14842
| 2
|
binding
|
up-regulates activity
| 0.2
|
Here we systematically quantified ligand-induced interactions between 148 GPCRs and all 11 unique G alpha subunit C-termini. For each receptor, we probed chimeric G alpha subunit activation via a transforming growth factor-alpha (TGF alpha) shedding response in HEK293 cells lacking endogenous Gq/11- and G12/13- signaling. | We defined positive coupling if any member of the subfamily scored LogRAi ‚â• -1 and negative coupling if all of the members scored LogRAi < -1 (Figure 3A-B). ROC analysis gives AUC = 0.78 (Figure S4A) when considering high-confidence known coupling data and suggested a threshold of LogRAi ‚â• -1.0 for defining true couplings. | The score associated to this interaction has a LogRAi ‚â• -1.0.
|
SIGNOR-256799
|
Q07960
|
P61586
| 1
|
gtpase-activating protein
|
down-regulates activity
| 0.864
|
We therefore developed a screening-compatible live-cell imaging assay, using FRET-based biosensors for the prototype GTPases RHOA, RAC1 and CDC4215,19,20 (Extended Data Fig. 2 and Supplementary Note 1)|We found catalytic activities for 45/75 RhoGEFs and 48/63 RhoGAPs| Our data thus not only reveal extensive promiscuity among regulators, but also that the inactivating RhoGAPs are less selective than the activating RhoGEFs (p-value=0.02)(Supplementary Table 2).
|
SIGNOR-260458
|
P06239
|
P20138
| 1
|
phosphorylation
|
up-regulates
| 0.271
|
Human cd33 has two tyrosine residues in its cytoplasmic domain (y340 and y358). When phosphorylated, these tyrosines could function as docking sites for the phosphatases, shp-1 and/or shp-2, enabling cd33 to function as an inhibitory receptor. Lck is effective at phosphorylating y340
|
SIGNOR-78960
|
P28482
|
P19634
| 1
|
phosphorylation
|
up-regulates
| 0.669
|
We have demonstrated that the map kinases extracellular signal-regulated kinases 1 and 2 (erk1/2) are implicated in growth factor activation of nhe1. / our results suggest that amino acids ser770 and ser771 mediate erk-dependent activation of the na+/h+ exchanger in vivo.
|
SIGNOR-151925
|
P0DP24
|
P00533
| 0
|
phosphorylation
|
down-regulates
| 0.345
|
Phosphorylation of calmodulin by the epidermal-growth-factor-receptor tyrosine kinase. Phosphorylated calmodulin does not exhibit the characteristic ca2+ shift normally observed with calmodulin in electrophoretic gels, an observation that is consistent with this modification affecting the biological activity of the molecule.
|
SIGNOR-266319
|
Q9P2B4
|
Q14247
| 2
|
binding
|
up-regulates activity
| 0.357
|
CTTNBP2NL interacts with cortactin and targets cortactin to stress fibers.
|
SIGNOR-261695
|
P49683
|
P09471
| 2
|
binding
|
up-regulates activity
| 0.306
|
Here we systematically quantified ligand-induced interactions between 148 GPCRs and all 11 unique G alpha subunit C-termini. For each receptor, we probed chimeric G alpha subunit activation via a transforming growth factor-alpha (TGF alpha) shedding response in HEK293 cells lacking endogenous Gq/11- and G12/13- signaling. | We defined positive coupling if any member of the subfamily scored LogRAi ≥ -1 and negative coupling if all of the members scored LogRAi < -1 (Figure 3A-B). ROC analysis gives AUC = 0.78 (Figure S4A) when considering high-confidence known coupling data and suggested a threshold of LogRAi ≥ -1.0 for defining true couplings. | The score associated to this interaction has a LogRAi ≥ -1.0.
|
SIGNOR-256973
|
O96017
|
Q96GD4
| 1
|
phosphorylation
|
up-regulates activity
| 0.324
|
Because Chk1 and Chk2 can share substrates ( ), we investigated whether Chk2 phosphorylates Aurora B-B-serine 331 in nocodazole.|In addition, Chk2 promotes proper chromosome alignment through Aurora B-B-serine 331 phosphorylation.
|
SIGNOR-278906
|
P24666
|
P14618
| 1
|
dephosphorylation
|
up-regulates activity
| 0.279
|
Indeed, it is evident that LMW-PTP, hydrolyzing phosphotyrosine residues, contributes to maintain PKM2 in its active form.|We speculate that this effect is in large part due to LMW-PTP inhibition, which leads a fast PKM2 phosphorylation and inactivation.|we demonstrate that in melanoma cells the overexpression of LMW-PTP is functional to maintain PKM2 in its dephosphorylate status – the tetrameric, “full active” form - which is retained in the cytoplasm
|
SIGNOR-277134
|
P17612
|
Q92837
| 1
|
phosphorylation
|
down-regulates
| 0.2
|
Phosphorylation of ser188 by pka inhibited the ability of frat1 to activate beta-catenin-dependent transcription.
|
SIGNOR-149689
|
P01111
|
P42336
| 2
|
binding
|
up-regulates activity
| 0.844
|
Grb2 binds and activates sos, which then activates ras, and this activates p110 independently of p85./it was also described that ras interacts with pi3k in a direct manner./lysine residue 227 is essential for the interaction of ras with pi3k
|
SIGNOR-175222
|
Q93045
|
P53779
| 0
|
phosphorylation
|
down-regulates
| 0.444
|
We demonstrate that purified scg10 can be phosphorylated by two subclasses of mitogen-activated protein (map) kinases, c-jun n-terminal/stress-activated protein kinase (jnk/sapk) and p38 map kinase;jnk3/sapkbeta phosphorylation occurs at ser-62 and ser-73, residues that result in reduced microtubule-destabilizing activity for scg10.
|
SIGNOR-112114
|
Q9Y6X2
|
P40763
| 1
|
sumoylation
|
down-regulates
| 0.731
|
Stat3 mediated signaling pathways can be inhibited by pias3 (protein inhibitor of activated stat3), which was recently found to regulate protein stability and function by its sumo (small-ubiquitin like modifiers) ligase activity in promoting sumoylation of important nuclear proteins.
|
SIGNOR-124723
|
P28482
|
Q15746
| 1
|
phosphorylation
|
up-regulates activity
| 0.478
|
Inhibition of ERK2 impaired phosphorylation of MLCK and insulin stimulated glucose uptake.|These findings suggest that ERK2 activates MLCK which then mediates the phosphorylation of RLC of MyoIIA.
|
SIGNOR-279226
|
Q66LE6
|
P56211
| 2
|
binding
|
down-regulates activity
| 0.694
|
We identified cyclic adenosine monophosphateregulated phosphoprotein 19 (Arpp19) and -Endosulfine as two substrates of Gwl that, when phosphorylated by this kinase, associate with and inhibit PP2A, thus promoting mitotic entry.
|
SIGNOR-243731
|
O95837
|
O43603
| 2
|
binding
|
up-regulates activity
| 0.311
|
Here we systematically quantified ligand-induced interactions between 148 GPCRs and all 11 unique G alpha subunit C-termini. For each receptor, we probed chimeric G alpha subunit activation via a transforming growth factor-alpha (TGF alpha) shedding response in HEK293 cells lacking endogenous Gq/11- and G12/13- signaling. | We defined positive coupling if any member of the subfamily scored LogRAi ≥ -1 and negative coupling if all of the members scored LogRAi < -1 (Figure 3A-B). ROC analysis gives AUC = 0.78 (Figure S4A) when considering high-confidence known coupling data and suggested a threshold of LogRAi ≥ -1.0 for defining true couplings. | The score associated to this interaction has a LogRAi ≥ -1.0.
|
SIGNOR-257136
|
P67775
|
P31749
| 1
|
dephosphorylation
|
down-regulates activity
| 0.893
|
Protein phosphatase 2A negatively regulates insulin's metabolic signaling pathway by inhibiting Akt (protein kinase B) activity in 3T3-L1 adipocytes
|
SIGNOR-252614
|
Q08881
|
Q08881
| 2
|
phosphorylation
|
up-regulates activity
| 0.2
|
In this study, we present evidence for another mode of regulation for itk, the autophosphorylation of tyr-180 in the src homology 3 (sh3) domain.
|
SIGNOR-103170
|
Q9NS75
|
P19086
| 2
|
binding
|
up-regulates activity
| 0.2
|
Here we systematically quantified ligand-induced interactions between 148 GPCRs and all 11 unique G alpha subunit C-termini. For each receptor, we probed chimeric G alpha subunit activation via a transforming growth factor-alpha (TGF alpha) shedding response in HEK293 cells lacking endogenous Gq/11- and G12/13- signaling. | We defined positive coupling if any member of the subfamily scored LogRAi ≥ -1 and negative coupling if all of the members scored LogRAi < -1 (Figure 3A-B). ROC analysis gives AUC = 0.78 (Figure S4A) when considering high-confidence known coupling data and suggested a threshold of LogRAi ≥ -1.0 for defining true couplings. | The score associated to this interaction has a LogRAi ≥ -1.0.
|
SIGNOR-256889
|
Q8N726
|
Q9HCX3
| 0
|
transcriptional regulation
|
down-regulates quantity by repression
| 0.302
|
Finally, we show that ZNF304 also directs transcriptional silencing of INK4-ARF in human embryonic stem cells.
|
SIGNOR-266098
|
P98082
|
Q05655
| 0
|
phosphorylation
|
down-regulates
| 0.296
|
Mutational analysis revealed that a dab2 ser(24) phosphorylation mutant (s24a) abrogated the inhibitory function of dab2.
|
SIGNOR-127198
|
Q14980
|
P11171
| 0
|
relocalization
|
up-regulates activity
| 0.533
|
These results indicate that 4.1 proteins recruit NuMA and dynein to the anaphase cell cortex through their conserved CTD (Figure 2I).
|
SIGNOR-266012
|
Q9HC98
|
O00141
| 1
|
phosphorylation
|
up-regulates activity
| 0.338
|
The present study is the first report of a protein kinase (NEK6) capable of phosphorylating the hydrophobic motif of SGK1, although our data suggest that NEK6 may not mediate this reaction in cells. Nevertheless, the phosphorylation of the hydrophobic motif of SGK1in vitro, coupled with the phosphorylation of the T-loop with PDK1, may be a useful way of generating fully active wild type SGK1. Ser377 and Ser422of SGK1, and the CDK7 T-loop peptide, which are phosphorylated by NEK6.
|
SIGNOR-250297
|
P18850
|
P18850
| 2
|
binding
|
up-regulates activity
| 0.2
|
E4BP4, ATF-6, OASIS, and XBP-1 all formed strong homodimeric associations on the array Transcription factor dimerization can increase the selectivity of protein-DNA interactions and generate a large amount of DNA binding diversity from a relatively small number of proteins
|
SIGNOR-224202
|
Q8NG66
|
O14757
| 0
|
phosphorylation
|
up-regulates
| 0.264
|
We demonstrate that chk1 (checkpoint kinase 1) directly activates nek11 by phosphorylating it on ser 273
|
SIGNOR-187863
|
P57058
|
O43736
| 1
|
phosphorylation
|
up-regulates activity
| 0.2
|
ITM2A is phosphorylated at T35 and the phosphorylation status of ITM2A contributes to breast cancer proliferation. Moreover, we found that ITM2A was phosphorylated at T35 by HUNK, a serine/threonine kinase significantly correlated with human breast cancer overall survival and HER2-induced mammary tumorigenesis.
|
SIGNOR-273640
|
Q9Y4K3
|
Q15750
| 2
|
binding
|
up-regulates activity
| 0.865
|
The irak1/traf6 complex can also activate jnk and p38 signalling through assembly of a catalytically active tab2-tab3-tak1 complex.
|
SIGNOR-205455
|
Q9Y5I2
|
O60330
| 2
|
binding
|
up-regulates activity
| 0.2
|
The clustered protocadherins comprise the largest subfamily of the cadherin superfamily and are predominantly expressed in the nervous system. Pcdh-alpha proteins interact with beta1-integrin to promote cell adhesion. They also form oligomers with Pcdh-gamma proteins at the same membrane sites.
|
SIGNOR-265698
|
P29323
|
P29323
| 2
|
phosphorylation
|
up-regulates activity
| 0.2
|
Our results demonstrate that autophosphorylation tyrosine 611 in the juxtamembrane region of chicken EphB2 is critical for the association of the Src SH2 domain.
|
SIGNOR-251124
|
P67775
|
P36507
| 1
|
dephosphorylation
|
down-regulates
| 0.493
|
In particular, p38 mapk activity stimulates the physical association between ppa2 and mkk1/2- erk1/2 complex, leading to mkk1/2 dephosphorilation by pp2a.
|
SIGNOR-166652
|
P56750
|
Q8TBB1
| 0
|
ubiquitination
|
down-regulates quantity by destabilization
| 0.294
|
We used the Ligand of Numb protein X (LNX) family of E3s, a group of PDZ domain-containing RING-type E3 ubiquitin ligases, to demonstrate the feasibility of this strategy. Many potential substrates of LNX E3s were identified. Eight of the nine selected candidates were ubiquitinated in vitro, and two novel endogenous substrates, PDZ-binding kinase (PBK) and breakpoint cluster region protein (BCR), were confirmed in vivo.
|
SIGNOR-272900
|
P51681
|
P13236
| 2
|
binding
|
up-regulates activity
| 0.862
|
The investigators showed that myoblasts constitutively express receptors for CCL2 (CCR2), CCL3 (CCR1 and CCR5), and CCL4 (CCR5), and that stimulation with either CCL2 or CCL4 was sufficient to promote myoblast proliferation.
|
SIGNOR-255116
|
Q99814
|
O94953
| 1
|
transcriptional regulation
|
up-regulates quantity by expression
| 0.2
|
To this end, we confirm that KDM3A, KDM4B, KDM4C, KDM5B, KDM5C, and KDM62 are direct targets of HIF-1a while extent the list of known targets to KDM2A, KDM2B, KDM4D, KDM5A, and KDM6A. The results demonstrated that majority of the KDMs were similarly induced (KDM2A, KDM2B, KDM3A, KDM4B, KDM4C, KDM4D, KDM5A, KDM5B, KDM5C, KDM6B, and KDM7A) or repressed (KDM NO66 and KDM1A) by both HIF-1a and HIF-2a.
|
SIGNOR-271584
|
Q92785
|
P11474
| 2
|
binding
|
down-regulates activity
| 0.2
|
DPF2 directly bound to ERRalpha and suppressed the transactivation function of nuclear receptors such as androgen receptor. DPF2 was recruited to ERR target gene promoters in myoblast cells, and knockdown of DPF2 derepressed the level of mRNA expressed by target genes of ERRalpha. These results show that DPF2 acts as a nuclear receptor-selective co-repressor for ERRalpha by associating with both acetylated histone H3 and HDAC1.
|
SIGNOR-239539
|
Q13976
|
P26678
| 1
|
phosphorylation
|
up-regulates activity
| 0.409
|
Phosphorylation of PLB by PKA or cGKI at Ser 16 relieves the inhibition of SERCA2a and results in increased contractility through enhanced Ca 2+ i reuptake into the SR.
|
SIGNOR-279269
|
Q8TDI7
|
Q96QU1
| 2
|
binding
|
up-regulates activity
| 0.436
|
Although several studies show that the tip links, composed of PCDH15 and CDH23, are required for normal mechanotransduction, it is unclear how they are coupled to the transduction machinery. Likewise, it has been demonstrated that the transmembrane channel-like proteins TMC1 and TMC2 are required for mechanosensitive responses in hair cells, but how they interact with other components of the mechanotransduction complex is not known. Here, we show that TMC1 and TMC2 can interact with PCDH15, thereby establishing a critical connection between the tip link and these putative components of the mechanotransduction channel in hair cells.
|
SIGNOR-262583
|
O76050
|
P78504
| 1
|
ubiquitination
|
down-regulates quantity by destabilization
| 0.707
|
We find that NEDD4 targets an RNA-binding protein, NANOS2, in spermatogonia to destabilize it, leading to cell differentiation.|Jagged1 is also regulated by the E3 ligase Neuralized-like1 (Neurl1), which induces the monoubiquitination of membrane tethered Jagged1 in the C-terminal region.
|
SIGNOR-278772
|
P12931
|
P09327
| 1
|
phosphorylation
|
up-regulates activity
| 0.363
|
These data suggest that phosphorylation of villin by c-src is involved in the actin cytoskeleton remodeling necessary for cell migration.To further investigate the role of tyrosine phosphorylated villin in cell migration, we used phosphorylation site mutants (tyrosine to phenylalanine or tyrosine to glutamic acid) in HeLa cells. We determined that tyrosine phosphorylation at residues 60, 81, and 256 of human villin played an essential role in cell migration as well as in the reorganization of the actin cytoskeleton
|
SIGNOR-247441
|
P31323
|
P17612
| 2
|
binding
|
down-regulates activity
| 0.881
|
Inactive PKA exists as a holoenzyme, comprised of two regulatory (R) subunits and two catalytic subunits . In the presence of cAMP, the holoenzyme becomes active by binding two cAMP molecules cooperatively to each R subunit, resulting in a conformational change in the R subunits, thus releasing the two C subunits to phosphorylate downstream targets
|
SIGNOR-258754
|
P54274
|
O95271
| 0
|
ADP-ribosylation
|
down-regulates activity
| 0.803
|
Tankyrase 1 ADP-ribosylates TRF1, inhibiting its binding to telomeric DNA.
|
SIGNOR-263377
|
Q5VU43
|
P10644
| 2
|
binding
|
up-regulates
| 0.315
|
Mmgl acts as a dual-specific akap by anchoring pka regulatory isoforms r1a and r2a.
|
SIGNOR-173769
|
Q96GD4
|
O95229
| 1
|
phosphorylation
|
up-regulates activity
| 0.651
|
Zwint-1 is a novel Aurora B substrate required for the assembly of a dynein-binding platform on kinetochores|During prometaphase, AurB phosphorylation of zwint-1 is required for recruitment of ZW10-, pT89 dynein-, and RZZ-dependent proteins to kinetochores. This is defective after AurB inhibition or after expression of the triple-A zwint-1 mutant. Triple-E mutant zwint-1 mimics phospho–zwint-1 in RZZ recruitment, even after AurB inhibition
|
SIGNOR-265010
|
Q13263
|
Q00987
| 2
|
binding
|
up-regulates activity
| 0.598
|
we present evidence that MDM2 interacts with the nuclear corepressor KAP1. MDM2 interaction with nuclear corepressor KAP1 contributes to p53 inactivation.
|
SIGNOR-240405
|
P06493
|
Q02952
| 1
|
phosphorylation
|
up-regulates activity
| 0.322
|
Mass spectrometry, molecular, and cellular approaches show that CDK1/Cyclin B1 phosphorylates Gravin on threonine 766 to prime the recruitment of the polo-like kinase Plk1 at defined phases of mitosis.
|
SIGNOR-271839
|
P50148
|
Q99527
| 2
|
binding
|
up-regulates
| 0.2
|
However, grpr preferentially couples to galfaq proteins.
|
SIGNOR-195320
|
P09471
|
P28566
| 2
|
binding
|
up-regulates activity
| 0.378
|
Here we systematically quantified ligand-induced interactions between 148 GPCRs and all 11 unique G alpha subunit C-termini. For each receptor, we probed chimeric G alpha subunit activation via a transforming growth factor-alpha (TGF alpha) shedding response in HEK293 cells lacking endogenous Gq/11- and G12/13- signaling. | We defined positive coupling if any member of the subfamily scored LogRAi ≥ -1 and negative coupling if all of the members scored LogRAi < -1 (Figure 3A-B). ROC analysis gives AUC = 0.78 (Figure S4A) when considering high-confidence known coupling data and suggested a threshold of LogRAi ≥ -1.0 for defining true couplings. | The score associated to this interaction has a LogRAi ≥ -1.0.
|
SIGNOR-256984
|
O15552
|
P63092
| 2
|
binding
|
up-regulates activity
| 0.2
|
Here we systematically quantified ligand-induced interactions between 148 GPCRs and all 11 unique G alpha subunit C-termini. For each receptor, we probed chimeric G alpha subunit activation via a transforming growth factor-alpha (TGF alpha) shedding response in HEK293 cells lacking endogenous Gq/11- and G12/13- signaling. | We defined positive coupling if any member of the subfamily scored LogRAi ‚â• -1 and negative coupling if all of the members scored LogRAi < -1 (Figure 3A-B). ROC analysis gives AUC = 0.78 (Figure S4A) when considering high-confidence known coupling data and suggested a threshold of LogRAi ‚â• -1.0 for defining true couplings. | The score associated to this interaction has a LogRAi ‚â• -1.0.
|
SIGNOR-256803
|
Q04760
|
P54756
| 0
|
phosphorylation
|
up-regulates activity
| 0.2
|
We show that Glo1 activity is promoted by phosphorylation on Tyrosine 136 via multiple kinases. Glo1 Y136 is phosphorylated by multiple different kinases including all members of the Src family. Depletion of multiple different kinases led to a partial reduction in Glo1(Y136) phosphorylation. These included members of the Src family (Src, Yes1, FGR, and the related Abl1), and of the FAK, EPHA, FGFR, and VEGFR families (Figure 2B), suggesting phosphorylation of Glo1 on Y136 by multiple different kinases. In vitro kinase assays revealed that all the members of the Src family, as well as Epha5 and VEGFR3, can efficiently phosphorylate recombinant Glo1 on Y136 (Figure 2C–D).
|
SIGNOR-276183
|
O75084
|
P56703
| 2
|
binding
|
up-regulates activity
| 0.743
|
These experiments suggest that activation of the Wnt/β-catenin pathway by Wnt3 is mediated in part through FZD7 in HCC cells.
|
SIGNOR-280437
|
O43683
|
Q02224
| 1
|
relocalization
|
up-regulates activity
| 0.831
|
Spindle checkpoint protein Bub1 is required for kinetochore localization of Mad1, Mad2, Bub3, and CENP-E, independently of its kinase activity
|
SIGNOR-252016
|
P21802
|
P11487
| 2
|
binding
|
up-regulates
| 0.767
|
Using fgf 1 as an internal standard we have determined the relative activity of all the other members of the fgf family. These data should serve as a biochemical foundation for determining developmental, physiological, and pathophysiological processes that involve fgf signaling pathways
|
SIGNOR-42374
|
Q9UL15
|
P0DMV8
| 2
|
binding
|
down-regulates activity
| 0.753
|
Here, we show that BAG5, a BAG domain-containing family member, interacts with both Hsp70 and parkin with deleterious functional consequences. Through these interactions, BAG5 inhibits Hsp70 chaperone activity and parkin E3 ubiquitin ligase activity; Thus, BAG5 interacts with Hsp70 in vitro and in vivo, and substitution of select residues within the BAG domains is sufficient to abolish this interaction.
|
SIGNOR-261196
|
Q14693
|
P12931
| 0
|
phosphorylation
|
up-regulates activity
| 0.2
|
Obesity-associated microenvironmental factors and other Src-activating growth factors, including the epidermal growth factor, activate Src and promote Src-mediated lipin-1 phosphorylation on Tyr398, Tyr413 and Tyr795 residues. The tyrosine phosphorylation of lipin-1 markedly increases its PAP activity, accelerating the synthesis of glycerophospholipids and triglyceride.
|
SIGNOR-277291
|
Q13535
|
Q9UIF7
| 2
|
binding
|
up-regulates
| 0.25
|
Binding of myh directly participates in atr and topbp1 activation in dna damage signaling, leading to apoptosis.
|
SIGNOR-173966
|
P31751
|
Q15672
| 1
|
phosphorylation
|
up-regulates activity
| 0.398
|
AKT2 phosphorylates Twist1 at S42 to enhance Twist1 mediated E-cadherin suppression.
|
SIGNOR-279137
|
Q13164
|
Q13164
| 2
|
phosphorylation
|
up-regulates activity
| 0.2
|
Activated ERK5 undergoes autophosphorylation on its C-terminal half, necessary for maximal activation of ERK5 transcriptional activation. The Ser731 and Thr733 sites were previously shown to be ERK5 autophosphorylation sites in vitro and also in ERK5-overexpressing cells.Our data coincide with a recent study examining whole protein phosphorylation in HeLa cells arrested in G1 and mitotic phases [37] reported that Ser731 and Thr733, as well as Ser720, are phosphorylated in ERK5 during mitosis. We also identified two unreported ERK5 phosphorylation sites, Ser567 and Ser803.
|
SIGNOR-259826
|
P14138
|
P23276
| 0
|
cleavage
|
up-regulates activity
| 0.676
|
These data demonstrate that the Kell blood group protein is a proteolytic enzyme that processes big ET-3, generating ET-3, a potent bioactive peptide with multiple biological roles.
|
SIGNOR-256354
|
Q9Y4H2
|
P08069
| 0
|
phosphorylation
|
up-regulates
| 0.802
|
Our results reveal that igf-1 receptors promote beta-cell development and survival through the irs-2 signalling pathway.
|
SIGNOR-70477
|
O76039
|
O76039
| 2
|
phosphorylation
|
up-regulates activity
| 0.2
|
Furthermore, we show that CDKL5 can self-associate and mediate the phosphorylation of its own TEY (Thr-Glu-Tyr) motif.
|
SIGNOR-262289
|
Q8NFU7
|
O94813
| 1
|
transcriptional regulation
|
up-regulates quantity by expression
| 0.2
|
Furthermore, TET1 catalytic domain possessed demethylase activity in cancer cells, being able to inhibit the CpG methylation of tumor suppressor gene (TSG) promoters and reactivate their expression, such as SLIT2, ZNF382 and HOXA9.
|
SIGNOR-259093
|
Q92974
|
Q14012
| 0
|
phosphorylation
|
up-regulates activity
| 0.389
|
In this study, we found that CaMKI phosphorylated GEF-H1 at Thr103, which is located close to the C1 domain.
|
SIGNOR-279359
|
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