id int64 | subtask string | question string | options list | answer_index int64 | answer_text string | metadata string |
|---|---|---|---|---|---|---|
401 | 4_histone_marks | Consider the chromatin state in K562 cells. Is this Human DNA sequence located in an open/accessible region?
Sequence: GCTAAGGAATTTTCTCTTTACAAACAGGTGGGTGAGAAAGTAGACACAGCACTGTGAATTTGTGGAGTTTTGAAAAATGGACAGAGGGCTACAGACTGAGAGGGAATAGGGCCACCAACTCTAGAATTAAGGTCAACTGATAGGGTAGAAACATGCCATTCTCAGGGGCTTAAGCTGACAAAAGAAATTGCCCACTGTAGA... | [
"No",
"Yes"
] | 1 | Yes | {"dim": "chromatin_state", "asked_state": "open/accessible", "true_label": "H3K27ac"} |
402 | 4_histone_marks | Could you verify if the following Human DNA sequence (from K562 cell line) is marked by H3K4me1?
Sequence: GAGGGATGCAAAAGTCTCAAGGAAAGAGAGAGACTGGGCTGACTTCCTCACCATCAAGTAGGAGACCCCCGAGGATCATCTTACCTCTCGGTGCCAAATTGGATTGGTGGTGTTACTGATGATAGTAGACCGTCTCTCCTGCCCGTGGTGGGCACAGGTGGGGAAACTGCTCTTCTTTCCTGGCTGAATTGACATCTTAAGATAAGGGTCAGG... | [
"Yes",
"No"
] | 0 | Yes | {"dim": "identity", "target": "H3K4me1", "truth": "H3K4me1"} |
403 | 4_histone_marks | Sequence: CTGGGAACTGAGCCACCAAGCCAAACAGCCACATGGAATGGCCATGTGTAGGTGTTCCTACCATGGCCCCAGCTGAGATCCCAGATGACAGCATCAACCGCCTGACTTGTGAGTGAGCCAGCCTTTTGATGATTACAGCTCCCAGCCTTTGGGCCACCCTGGCTGATGCTAAGTAGAGCAGAGATCCTGCCCAAACTGGAGCTTCAAAAGCAAAATAAATGCTGGAATTATTATTATTATTATTATTATTATTATTATTATTTAAGACAGAGTCTCGCTCTGTTGCCCAGGCTGTAGTGCAGTGGCACGA... | [
"No",
"Yes"
] | 0 | No | {"dim": "chromatin_state", "asked_state": "closed/repressive", "true_label": "H3K4me3"} |
404 | 4_histone_marks | Can you confirm that the K562 DNA sequence CGGGAGGTCACAGTGAGCAGAGATCGTGCCATTGCACTCCAGCCTGGCGACAGAGAGAGACTCCATCTCAAAACAAACAAACAAACAAAACAGAGGCCCATAAGACTGGGTAACATCCCCATAGCCCCAGCTGTTTTTACCCAGGTTGAGGCCTAAAACCAAGAGGTGACTTCTGACTCCCAGCCTTTTCACAGTGGCTAGCAGTAGTTCTACTGTTGAGTTCAACAGTCTAAGCTAGACAACTGGGAAAACCTCAAGAAAGAACATAATTTAGACT... | [
"Yes",
"No"
] | 0 | Yes | {"dim": "identity", "target": "H3K4me1", "truth": "H3K4me1"} |
405 | 4_histone_marks | In the context of the K562 cell line, does the DNA sequence AGTGGAGGAGGTAAGGGGGCCATCAGGCTCTGGAATCTGACGGTCCTGTGGGGTTTCTTTCTCTTTGGGTCACCTCCCCAGACCCTGGGAAACACACCTGTGCTCCTTCTGAGGGAACAGTGGGGGCGCTGGGCTCCCTGTAGACACCACCTCAGGGCCTGCTGCTGGCTCTGGTGCACATGGAGCGTGCTCTGCTCCAGCCTCCGCCGCTGCCAGGTGGCTGCCCAGACCAGGGCCCCCCATGCCACTCGGTGCTGGAG... | [
"No",
"Yes"
] | 0 | No | {"dim": "identity", "target": "H4K20me1", "truth": "H3K4me1"} |
406 | 4_histone_marks | Does this sequence exhibit features of open/accessible chromatin (e.g., accessibility) in the K562 cell line?
Sequence: TTATCACCTAGGAAATAAAATAGTCAGAATGGTCTTTAAAATATTCAGTTTCCAGAGTTCTACTGATAGATTTTAGGATACTGCATCACATTATTAAAAGAACTGTTGAAGAAAGCACCAATGGCCAGCTGTCACAAACGTTACACTCCACCACCCCCGTATTTCAAGCACGTTAGAGAAAGTGTATCCATTTGCTAACA... | [
"Yes",
"No"
] | 0 | Yes | {"dim": "chromatin_state", "asked_state": "open/accessible", "true_label": "H3K27ac"} |
407 | 4_histone_marks | I have a DNA sequence GCCTCCTTTTGACAAACGACATTGGACCTGTGCTCCTAAGCATTCTGCAGGAGTTGGGCAGCAGTGCTTCAGTTGGGTGGGCTCCCTTCCCCGCAGGATCTGCCTAGCTCCCTGTGCATCTGTGACCTTGGTTGCCACCTGAACTCATGCCCTCAGCCCAGAGCCGAGGCCTCAGGGGAGGCGTCTGATGAAGAAGGAGCAAATTGTATGCAGACCTGAGTTCACTCTGCTGTAAGGAAAAGGCCAGAATTGACATTTTTAAAATTCAGTATCGTCTAATAATAAAACTCTGTATTTA... | [
"No",
"Yes"
] | 0 | No | {"dim": "identity", "target": "H2AFZ", "truth": "H4K20me1"} |
408 | 4_histone_marks | Look at this DNA sequence derived from human K562 cells: CTAAGTTTCTCCACAAGGGAGGCTGCCAGATGGTCACCTGGACATCACTGAAGACAATCTTATGTATCAAAGCACTGGAAACCTTATCATCAGGCAGGAAAGCTGGACCAGCAATCCACTTTCTATGGCCACCATGCTCTGGAAAAGTAGGAAAGTGAGTCTGTCAGACTGAGGCCAGAAATGGCATGCTCTTTTGTCCATTCAACAAATGACCATCATTAATAGTGGCATCATCTTAACACGGTTTTTCCTTTTTTATAAAC... | [
"Yes",
"No"
] | 0 | Yes | {"dim": "identity", "target": "H3K4me1", "truth": "H3K4me1"} |
409 | 4_histone_marks | Based on the epigenetic profile of K562 cells, would you classify the state of this DNA sequence as closed/repressive?
Sequence: CTAGAAACAAGAAGCAAGAGTACGAGGTCTTTAGGCTGCGTCCCCCTCCCGCAGTCAGGGCTGCCAGTGAGGGAAAGAGAAGAAAGGGTGGACGGTTGAAATGGTGATCACTCGAAGTCAGAAGATACAAGTGAGGGCTTTGAGACCCGCTCAGGAATAACTCATGAGCAATCAGCACGCGCTGAGAGGAA... | [
"No",
"Yes"
] | 0 | No | {"dim": "chromatin_state", "asked_state": "closed/repressive", "true_label": "H3K4me3"} |
410 | 4_histone_marks | Does this sequence exhibit features of closed/repressive chromatin (e.g., accessibility) in the K562 cell line?
Sequence: CCACGCCGCGCCCGCAGGCCCCGCTGCCCGCAGCCTCTTCCCGACGCCCCAGGCCGTGCGCCCCCCCGAACCGGGCCCACCGCGTGCTGTGCGGGGCTTCCGCGCCTGCGCACGAACGCTTCTGCGAGCTTTCTCGGAAGCAGCTGGGGGGCGGGGAATCTGCTGAGGAACGGCGCTTTATAAATCAAAAGATAATAA... | [
"Yes",
"No"
] | 1 | No | {"dim": "chromatin_state", "asked_state": "closed/repressive", "true_label": "H3K4me3"} |
411 | 4_histone_marks | We identified this DNA fragment in a K562 sample. Is it a site of H3K27ac modification?
Sequence: AAATGAGACCTGATAATAGAACTACTGGGTGTTAGATACACACTGAAGGTCAAACATGAATACCACCACCACCGATATTTCCCTGAAGATATCTGAACCCAGCAAGGACTGTTGGCCACTGATTCCTGCGGATCCAGAAGTTTTTTGTTGTTTTTTTTCAGAGACAGGGTCTATCTCTATCACCCAGGCTGGGGTGCAGTGGCGGATCAGAGCTCACTGCA... | [
"No",
"Yes"
] | 1 | Yes | {"dim": "identity", "target": "H3K27ac", "truth": "H3K27ac"} |
412 | 4_histone_marks | Does this sequence exhibit features of open/accessible chromatin (e.g., accessibility) in the K562 cell line?
Sequence: TCTGTCTGCATGCACTGGAATTGAGGTCTGTGGATGTGCCTTTCCTGACAATATTTCTTCACGCTTGCTGCCCACTGGTGCTGTGAGGGCACAATAACGAATGTTTACTTTGCCCTTGCACTCTTCACATCTGGGAACCGCAAAGGAGCGCGGTGGTCGGACTGTCAGCCTCGCCTTCTATTCTTTGATTTCCAGTAACT... | [
"No",
"Yes"
] | 1 | Yes | {"dim": "chromatin_state", "asked_state": "open/accessible", "true_label": "H3K9ac"} |
413 | 4_histone_marks | Look at this DNA sequence derived from human K562 cells: GTTCTTCCCCAGAAAGTGCTTGTCGAGGGTTAATCCATAAGGTCACTTGAAAACGAAGCCATTATTCCCTTCTTAAAGGTTAATGTGTTTTTTCCGGGAGTGTGTGAGTGGAAATTTCAAGTATTCCACATTCTTCATTTAGCTGGGTAAAGTCCTGAGCTCTTCTGGAAAAATGAGCCCATGGAAAGCAAGACTGGGAGCCTCCAGCAGGAGAAAGCAGGGCAGTGGGGGTGGCTGTGCCCCCCTGCCTCCCAGCCAGGTAT... | [
"No",
"Yes"
] | 0 | No | {"dim": "identity", "target": "H3K4me3", "truth": "H3K27me3"} |
414 | 4_histone_marks | Sequence: TTGTGAAAGATTAACTTTACAGAATTGAGCCTACTTTAGGCTCAAGACTAACCCTCTACAGTAACCCTCAGGTTCTAACCATTGAGGGACAGGGCCTTACTCTGTTGCCCAGGCTGAAGTGCAATGGTGTGATCATGGCTCACTGACTGTAGCCTCGAACTCCTGGGCTTAAGGGATCCTCCTGCCTAAGCTTCTTGAGTAGCAGGGACTACAGGCGCATACCACCATGTGCGGCTAATTTTTACATTTTTTTGTGGAGATAGGGCCTCACTATGTTGCCCAGGATGGTCTTGAACTCCTGGGCTCAAGC... | [
"Yes",
"No"
] | 1 | No | {"dim": "chromatin_state", "asked_state": "open/accessible", "true_label": "H3K27me3"} |
415 | 4_histone_marks | Does this sequence exhibit features of open/accessible chromatin (e.g., accessibility) in the K562 cell line?
Sequence: AAACATGCTGAGTGAGTGTAAAGTGTTCTCACCACAAAGATGATAACTGTGTGAGGTAATGCATGTGTTAATTAGCCAATATAGTTCTTCTACAGTGTACATATAGGTCAGCTACGCTACTTTCATGACTTCAGCCATCACTGCTATGAAGATTACTTCCAAACAACCTCTTCAGTCCTGTTCTCCTTTCCAATACTGTG... | [
"Yes",
"No"
] | 1 | No | {"dim": "chromatin_state", "asked_state": "open/accessible", "true_label": "H3K9me3"} |
416 | 4_histone_marks | Sequence: ACTTGTGGCTCCCCAGCTGAGAGAACACTGAGCCATAGCAGGAGTCTTGTCGGTGAAAAGGGAGCAGGCCTTTCTTTTCTGATATGAATGGAGCCAGTGTTTGCAGCCAGCGCCATGCTCCCAAGTGTCTGCCAAGCGGCCATTGCCAGCTTTGCTGGGTTACACTGGACATCTTGGGAGACAACTGCGCAGATGAGAGTCCCAGAGTGGGGACATGGTTAAATAAGTACACAAGGAAGTGGCGAGCGCTGGCTGAGCGTGTTCTGGTCAGGACTAGAGAACCCCCTGCCACCAGTGCCATTTCTCTTTA... | [
"Yes",
"No"
] | 1 | No | {"dim": "chromatin_state", "asked_state": "open/accessible", "true_label": "H3K27me3"} |
417 | 4_histone_marks | My hypothesis is that this DNA sequence from the K562 genome carries the H3K9me3 signature. Is this correct?
Sequence: ATGTCCCTTCCAGTTTTTTCCTGCTTAAGCCAGTCTTGTCTTTTTTTCACTTGCTACCGTAAGATTTTTGTCTTGTACACAAAAATAGAATCAGCTCATACGTAACTTTTTTGTGTAACTTCTCCTTTTCCTTCTTTCCTCTCCTCAACCTTAACATTAAAAGCTAAAGGCTCTTGTTCTGAGTCCCCTCTAATAAAAAAT... | [
"No",
"Yes"
] | 0 | No | {"dim": "identity", "target": "H3K9me3", "truth": "H3K4me2"} |
418 | 4_histone_marks | Is this DNA fragment associated with an open/accessible chromatin configuration?
Sequence: TAATCTGAGCTGTCACCATGATCACCTTGTTTTGTGACAAGCTTTTTTTTTTTTTTTTGACACAGGGCCTCACTCTGTCACCCAGGCTGGAGTGCAGTGGTGCAATCATGGCTTATTCCAGCTTCAACATCCTGGTCTCAAGCAATCCTCCTGACTCAGCTTCCTCATAGCTGGGGCTACAGGCACACATACCACGCCTGACTAATTTTTATAAATTTTTTTGTAGAGG... | [
"No",
"Yes"
] | 1 | Yes | {"dim": "chromatin_state", "asked_state": "open/accessible", "true_label": "H3K9ac"} |
419 | 4_histone_marks | Sequence: TCTCAAATGAGCAGTTAGTTTGTTCCTCTGGATGTGTGTGGGTGAGCACTTTGCAAACACCGTATAATGCCATGATCAAACGCCCTTTCCAGCCGAATCTGGCTTTTGAGCACTGTTTTCTGTCAGAGACACAGCCATGCAAATGAAATGCAAATACGAATAGTGGGTAAATATTCATGCGTAGCGGCGAGATGCCAGCCGACTGGAAACAAAAGTCAGAGAGCTGCAGAACGTTAAAGGCAATTTGACCTCTTAGGGAGGCTGGTAGGTAGAATGGTTAAGTGTGCAGGCCTTTAGGGGTCTGAAACCC... | [
"Yes",
"No"
] | 1 | No | {"dim": "chromatin_state", "asked_state": "open/accessible", "true_label": "H3K27me3"} |
420 | 4_histone_marks | Based on the epigenetic profile of K562 cells, would you classify the state of this DNA sequence as open/accessible?
Sequence: GAGATGGCGTCACTGCACTCCAGCCTGGGGGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAGCAGAAGGCAAGGCCCTATCCTGGTAGCTGGGGAGAGGAACCTGACACCCACCACTCCCCCAACTCCACCTCACCAGACTCACCAGAGTGCCCTAGCCTCTGAGTTCTCTCAGCCTGGGACCAG... | [
"No",
"Yes"
] | 1 | Yes | {"dim": "chromatin_state", "asked_state": "open/accessible", "true_label": "H3K9ac"} |
421 | 4_histone_marks | We identified this DNA fragment in a K562 sample. Is it a site of H3K9ac modification?
Sequence: AAAATGGGCTGTTTAGACCAACACTAATAGTGTCCTTTGGGATTTAAAATATACGAAAACAAGAGCACCCGAGGCCCGGCGGAAACACAGTCTCGCTGCTGGGAGGCTCTGGCGTTGCTTGAGCCACTGCACCGCAGACTCAATCCCTAGGGTAACTGCTGGAGTAATAATGAAAAGTGACACTGAGAAAAGGCAAAAAAAGAGAAAGAAAGTAACCAACGA... | [
"No",
"Yes"
] | 0 | No | {"dim": "identity", "target": "H3K9ac", "truth": "H3K27ac"} |
422 | 4_histone_marks | Does this sequence exhibit features of closed/repressive chromatin (e.g., accessibility) in the K562 cell line?
Sequence: TGATTTCTCCTATGCTAATATTTTCTCCCCTTATTCACCTTGCCTACTTCTTCCTATGAATCATTTCATACCCAGCCCAAGTGTCACCTTCCCACAAGCCTTCCCTGAATCCTCGAGGGGGCTATAGCTATTTTCTCCCTGCACACTTTCACAATCCTCTGCTTTATTCTATCTGAGAACTTATTACAGTTTTGTAAC... | [
"No",
"Yes"
] | 1 | Yes | {"dim": "chromatin_state", "asked_state": "closed/repressive", "true_label": "H3K9me3"} |
423 | 4_histone_marks | Does this sequence exhibit features of closed/repressive chromatin (e.g., accessibility) in the K562 cell line?
Sequence: ATGACATGGAACTCCAGGGTCTAGAACTCTGGGGTTCAACCAAGGACGTGTATAGGTGCTTGAGCTAAAAGTTCATGAAGAAGTATTCTGGCCTGTCCCATACTACTCTAATGCACTGCCCTAGGAGGGCAAGATGACCTTCTAACCAGGCAGCATGACAAGTTAGGCCCTTATGTTCTCTTAAGAGAATGCCCAAGG... | [
"Yes",
"No"
] | 0 | Yes | {"dim": "chromatin_state", "asked_state": "closed/repressive", "true_label": "H3K27me3"} |
424 | 4_histone_marks | In the context of the K562 cell line, does the DNA sequence ACTTGTCTCAGATACTTGTTGGTTTATGGTTATTACAACAGGGGCTACTCTTGGGTGTTTAAGATAAGTAAGGGTGTGGTTTAGACACTTAGAGAAACGTTTCTGTAACAAAGTGCACTGTAAAAGCATTACATGGCCTAGTCCCACGACAGCTCTTTTTTTGGAGACCCAGGATTCCCTGTGAGCTCTGCTTAGAGCTCAGAGATCCAGTTAAAAGACAGAGACTGAGTTTAAAACTACTTATCTAAATAAAAATGGTC... | [
"Yes",
"No"
] | 1 | No | {"dim": "identity", "target": "H3K36me3", "truth": "H3K27ac"} |
425 | 4_histone_marks | Is this DNA fragment associated with an open/accessible chromatin configuration?
Sequence: CCTGTAGTTCAAATAGTTTGAGCGCTCCTTAACACTGCTCTTTAAAATGGAAAAAGAAGACCATTTATTGATTGCATGGACAAAAAGAAACAGATAATACCCCTCAGGTAAAATTCGTCACAGATTTTAGTATTTTTGCCCTTGGGAAAGCTATGGCTTGCAGTAAGAGGGGCTTTACTGCCACCTCCCGGATCACGGCTTGGCAGCACCAGGCAGTCCTCAACAGAGC... | [
"Yes",
"No"
] | 0 | Yes | {"dim": "chromatin_state", "asked_state": "open/accessible", "true_label": "H3K4me3"} |
426 | 4_histone_marks | Based on the epigenetic profile of K562 cells, would you classify the state of this DNA sequence as closed/repressive?
Sequence: TCTTATACCCAGGGTACCTTTCAGCCTTAGTTGGTTGTAATAGACTGTAATTTTTACTTTGAATTTTACACTTGTGTCACAATTTAGCCATTAGATTCTCTTTCTTCAGCTGAGTGGCTTCTTGATGCTTTCTGAAGGCACTCTTGAAAGCATCTGTGCTTTTTGATAATAAGATATCCTGCCCCTAAACT... | [
"Yes",
"No"
] | 1 | No | {"dim": "chromatin_state", "asked_state": "closed/repressive", "true_label": "H3K27ac"} |
427 | 4_histone_marks | Consider the chromatin state in K562 cells. Is this Human DNA sequence located in an closed/repressive region?
Sequence: ATGGGAATGTAAATATCTCATCTGGCCAGGCCTGCGTGAGAATTCGATGAGATAAAGTATGCAAAGCACCACGTGCCATATCTCGGTGTTCCTGCACTGGGAGGCACTGAGTCCCAAAGCAGGAAGGCACTGACGGTTAGGGCCCCTCCCAACGCAGGAACAGCCGGGGTAGGAAGGGCAGAGGTCACAGCTGGAGGAA... | [
"No",
"Yes"
] | 0 | No | {"dim": "chromatin_state", "asked_state": "closed/repressive", "true_label": "H3K9ac"} |
428 | 4_histone_marks | Sequence: AAGGGCTGGCCATTCAGTTGCACTGACCTACAGTGAGGAAAAACAGTATGGGACTCATTATTGCATTATAAGGGAGCCACTGCAACAAAGCCTAGCCCCAGATGGCCTGGCAGTGTCTGATACACACACACAGCTGACACTTATTGTTACTGGCTATGCCCTAGATTCTGACCTAGGTGCTTTACTTTAATAACTCATTCAAACATCCCAACAACCCCCCCACTCCCCTGAGGTAAGTAACTATTAATATCATTATCCCCATTTTATCTAGAGTGGCTAGGTGACTTGTCCCAAGTCACACAGCTTGGAG... | [
"No",
"Yes"
] | 1 | Yes | {"dim": "chromatin_state", "asked_state": "open/accessible", "true_label": "H3K9ac"} |
429 | 4_histone_marks | Does this sequence exhibit features of closed/repressive chromatin (e.g., accessibility) in the K562 cell line?
Sequence: ACCCAGGATGGTGGAGGCATGAATTAGGAATCCTAGAAAAGAGATCCGAGAGCTTTAAAACTTAATATGGCTACACACCCGCTAAAATAGCTAAAATTACAGAGACTGACAATATCAAAATGTTAGCAGGGATATGGAGCAACAGGAACTCCCATGTATCTTCATTGGCGGGATGGTAAAATGATACAAGCATTTTTC... | [
"No",
"Yes"
] | 0 | No | {"dim": "chromatin_state", "asked_state": "closed/repressive", "true_label": "H3K4me3"} |
430 | 4_histone_marks | Is H3K27ac the associated histone modification for this specific DNA sequence in K562 cells?
Sequence: GGTACTAATGCAGGCTGAGACAAGTGTATTGAACTGGTGACTTGACTACTATAAGCAGTGCTGCCATTAGTGACTTGATTTTCCAAAACAGTAAATGTGGCAGATTATATTTTCCACAAATGGTCACAGAAACATTTGTGGTCCCACCTGCAATTCCGGAGCTTTGCCACTCCCCACTTGAAATTGGGTGGACTTGTGTGACTGCCTAAACAAGGT... | [
"No",
"Yes"
] | 0 | No | {"dim": "identity", "target": "H3K27ac", "truth": "H3K9me3"} |
431 | 4_histone_marks | Is H3K9ac the associated histone modification for this specific DNA sequence in K562 cells?
Sequence: CAGCAAGGAGAGACAGTCCCGCACCCCCGAGGGACGGAGGCACAGAAATAAAGCCCGGCTTCTACCCCAACTTGGCCAAACACAGACCTTTCTGGAAAAAAAAGAAAAAAAGAAAAAAAGAGAAAAAAGCCACAAAACACTTCCCCAACATGGACAGATCCCTGGGTCCTCAGGAGAACAGACAGCACACAAGCTGCTCCCGGCTTGGTCCTAGTCT... | [
"Yes",
"No"
] | 0 | Yes | {"dim": "identity", "target": "H3K9ac", "truth": "H3K9ac"} |
432 | 4_histone_marks | Based on the epigenetic profile of K562 cells, would you classify the state of this DNA sequence as open/accessible?
Sequence: GTGAAAAGGCAGTGGGGAGGAAGAAAAAGCTGGCTTCCTGCAAGCCCCTGCATTCCACTGGCTTCACATGAAGGGGCCCCTGATGCCCTCAGCCTTGCCAAGGCCTCTGTTCTGTCTCCTCTGCTTCTCCCAGAGCTACAGGCCCTAAGACTGCCCTCCCTCTCCTGTCTCATCATTTTCGCTCTCTCTCTCT... | [
"Yes",
"No"
] | 0 | Yes | {"dim": "chromatin_state", "asked_state": "open/accessible", "true_label": "H3K9ac"} |
433 | 4_histone_marks | Sequence: GTGACTTCCAGAAGAATGGCAATGGCACAACCAGCGGCATTGGCAGCAGCGTGGAGAAGTACATCATTGATGAGGACCACATGTCCTTCATCAACAACCCCAACTTGACTGTACGGGTACCCATTGCTGTGGGCGAGTCTGACTTTGAGAACCTCAACACAGAGGATGTTAGCAGCGAGTCGGATCCTGAAGGCAGCAAAGATGTAAGGTCCCAGCCTAGAAACAGCCTTGATCCTGTGTGAGAGCAAACAGGGTGCTGTCAGCCTTGGGGATTGGTTCAGCTATGGGCTTGGTAGAGAGATTCTGGAAT... | [
"No",
"Yes"
] | 1 | Yes | {"dim": "chromatin_state", "asked_state": "closed/repressive", "true_label": "H3K27me3"} |
434 | 4_histone_marks | We identified this DNA fragment in a K562 sample. Is it a site of H3K4me2 modification?
Sequence: GCTCTTAGATTAAAGGGCTCTAAGAAGAGATCAGAAATCTGAGATAACCAAAAGCTTCTGTTTTCCAAGAGAGCTCTTGAATGCCCAGACTCCCCGAGACTGGTGGAAAATTAAACCCAGTGAGACTTCAAGAATTAAACCTCACTTAGACTTCAGTTACAAGGAGGTGGAGGCAGGATTTTGTGTGAACCTGGAAGAGGCAGGGCTGGTGGAGGGGGCTG... | [
"No",
"Yes"
] | 0 | No | {"dim": "identity", "target": "H3K4me2", "truth": "H3K4me1"} |
435 | 4_histone_marks | We identified this DNA fragment in a K562 sample. Is it a site of H3K4me2 modification?
Sequence: TGCTATCTATTTTGTCCTCCAAGTCATATTTACTAATAGAGTAAAGATTCTAGAGCTTAGAGGAGCGCTTTAGTACCTATTACCCCCTAAGAAACACCATCCACTGATCTGGGGGCATAGCTTCTGCCTAAGTTTGGCTTAGATTTGCATTCTGATTGTTGAATACTCTTGTGGCCTCACTCTTTTTACATTCACAATTAGAACTGGAGACCAAATTTCCA... | [
"Yes",
"No"
] | 1 | No | {"dim": "identity", "target": "H3K4me2", "truth": "H3K9me3"} |
436 | 4_histone_marks | We identified this DNA fragment in a K562 sample. Is it a site of H3K4me2 modification?
Sequence: GCTACATACTTGGTAGCTTAAAACATCAGAAATTATCTCACAGTTTTGGAGGCTAGAAGTCCAAAATCAAGGCTCTAGGGAAGAATCTTTGCTTGTCTCTTCTATCTTCTTGTGGCTTGGTTGGTATTCCTTGACTTGTGGCGGCAAAACTCCTGTCTTTGCCTTCATCTTCCCTTGGTCTTCTTTCTGCATCTTCTTTTCTGTCTCTTAGGGTCTACCTT... | [
"No",
"Yes"
] | 0 | No | {"dim": "identity", "target": "H3K4me2", "truth": "H3K9ac"} |
437 | 4_histone_marks | Consider the chromatin state in K562 cells. Is this Human DNA sequence located in an closed/repressive region?
Sequence: AAGTATTAAACGTGAATTACTATCTTTGTTCAGTGGGCTTATGTTTCAGACTGCTGGAGATGCTGCAGGTTACAGTAGAAGCTTTTACTGTACTCTATAGCAGAAGTAGTGATGTATTAGCAGAGGTACAGATGACATGCAGTGTGAAGTGGGCTGCCATAATAGGGAGAAAGCTAGGAAAAATGAACTGAAGTAGCAT... | [
"Yes",
"No"
] | 1 | No | {"dim": "chromatin_state", "asked_state": "closed/repressive", "true_label": "H3K4me3"} |
438 | 4_histone_marks | Is this DNA fragment associated with an open/accessible chromatin configuration?
Sequence: AGACACTCCCCCGTGCTGAAAGAGCTGCAGTGACCACAGGATTAAGTCAGAACACTCAAGCTCCTTTGAATTCATGGAAAGAAGGATAAGTACAAACAAGCCCAGACTGTGAATATTGTAATAAATGCCTGATTCTTCAATGCCAAGACGTTGATAAATGTCCACAAGCATCAAAAACATCCAAATCTAGATGTGGTGGCTCCTGTCTATAATCCCAGCTATTTGGGAG... | [
"Yes",
"No"
] | 1 | No | {"dim": "chromatin_state", "asked_state": "open/accessible", "true_label": "H3K9me3"} |
439 | 4_histone_marks | Consider the chromatin state in K562 cells. Is this Human DNA sequence located in an open/accessible region?
Sequence: GTTCTTGCCTGGTCTCTCTTAGGGTTCCAGCGGCCCACCGCTTATACCTCCTTCGCCTTTCCACCACTTTCCATGTTTAATTCCTTAGGCAGCTTCATCTGATTCCCCCACCACCACCCACCCGCCCTGCCTGCACATAAACGCAAGCAGGTAGCAAAACTCAGGGGCTAGGAGAGGCGTGGTGTGAGCCTTTGGCCCCAG... | [
"Yes",
"No"
] | 0 | Yes | {"dim": "chromatin_state", "asked_state": "open/accessible", "true_label": "H3K4me3"} |
440 | 4_histone_marks | Does this sequence exhibit features of closed/repressive chromatin (e.g., accessibility) in the K562 cell line?
Sequence: GACATTGTTATTTCAGGTGGGATGAGAGACAGTGTGGCTGGGAGTGCATCACACACCTATTTTTCCTTTGTTTCTCTGTTTCCTAGAAATGATCCATTAGCCAGATCAAGAACTAACACTTGAGAGAGAATTCTCAACAGACACACCGAGTTGTGTTCCTAAACAACAAAAGCATTCGTGGAATGTGCAAAGGAGGCT... | [
"Yes",
"No"
] | 1 | No | {"dim": "chromatin_state", "asked_state": "closed/repressive", "true_label": "H3K9ac"} |
441 | 4_histone_marks | Based on the epigenetic profile of K562 cells, would you classify the state of this DNA sequence as open/accessible?
Sequence: ATTTCTAGCCATTTGCTTCCACAAACAACCCTGCGATGAACATATCCTCACGCATTCACCTTTGAGCATGTGGGCTGGTGTGCCAGCTGGATAACTTCCTAGAAGTGGTATTGCTGGTCAAAGGATACATGCATTTAATTCAGTATGTGTCACCACATTGTTGCCTAGAAGGTTTTGAGCAGGGGAATGACAG... | [
"No",
"Yes"
] | 0 | No | {"dim": "chromatin_state", "asked_state": "open/accessible", "true_label": "H3K27me3"} |
442 | 4_histone_marks | I have a DNA sequence GTTCACAGCCCTAATAATAATTCTGATCACGCCACTTCAGCATCTTGTGTCAAAGTCGAAACTGGCTTCCCCGCCCCCTTCAATCTGAAAGCTGCCAAGTCCTCACACACTTCACATTCAACCACAACTTAATGGATGGGATATTGTGCATTAAAATGTGTCTCAGACGTATTGGGGAAAAGAAGACAAGGAGAACGAGAGATAGAGACACACATAGGAAGAGGAAAAAAATCGGCAGCAAAAATAGCGGGGTTGGGGGGAAACTATTAACAGGAGTGGAAAGAAATCCATCAAAATC... | [
"No",
"Yes"
] | 1 | Yes | {"dim": "identity", "target": "H3K4me3", "truth": "H3K4me3"} |
443 | 4_histone_marks | Does this sequence exhibit features of open/accessible chromatin (e.g., accessibility) in the K562 cell line?
Sequence: AGGCATCCTTATTTTTCACACCACAAATTCCATCCTTAGCTCTGTGAACACACCAAGTTCCCTCTGAACTGAAATGAACATTAGCTCCCATTTTAGAGTGAAAGGTGGGGAAAGTGAGATCTTAAACTCCTTGCCCACATTTGGCACATTTGAGGAACCACTAACATTTATCACGTACGAAGAATTTTCATACATATTAT... | [
"No",
"Yes"
] | 0 | No | {"dim": "chromatin_state", "asked_state": "open/accessible", "true_label": "H3K9me3"} |
444 | 4_histone_marks | Can you confirm that the K562 DNA sequence GAAGGAGAAATCATCAGCTAGATAGATAGTGACTATGCTGGAGGTGAGTGAGAAGTTGGCTTTGGTCCAGGTCTCAACTGGGCAGCTGCTGGACTGAATCCAGACTGGCTGGCCCTTACATTCTCCTTGTTGCTTGTCTACAACCTCCGAGAGTCTTGAGCTGGGTGTGAAAGTCTCCTTCTACCTAAAATGTGGATGTGTGATGCAGGGAGGCGTCAGGAGATAGGGAATGCTGGGGCTGTTTTTCCTAAAAGCAAGAAGGAAAATGAAAGCTTAA... | [
"No",
"Yes"
] | 0 | No | {"dim": "identity", "target": "H3K36me3", "truth": "H3K9ac"} |
445 | 4_histone_marks | Does this sequence exhibit features of open/accessible chromatin (e.g., accessibility) in the K562 cell line?
Sequence: CCGTGTCTTAGTGGTAGTGGTCCCCCGGGCCCAGCTGTCTTTTCTTCTCTTTGTCTTGTGTCTTTATTTCTATAATCTCTCATCTCTACACACGGGGAGAAAAACCCACAGACCCTGTAGGGCTGGCCCCTACACCTCTCTCCCCTCTCTCCCTCTCTCTCCCTCCCTCTCTCTCCACCTACCTCTCTCCCCCCTCCCTC... | [
"Yes",
"No"
] | 0 | Yes | {"dim": "chromatin_state", "asked_state": "open/accessible", "true_label": "H3K4me3"} |
446 | 4_histone_marks | Sequence: ATCTTCAGGAAAGGTAGAAGGGACTAATGGTCTTTTACAGACACACCTCACCAAGCTCAGCCTCCAGCTTAAAAAGGACTGGACAGTACTTCTACCTCTTGCCCTTCTCAGAATTAGAGCCTGTCCTCAAGAAGCTACACGGTACAGTCCATTTAAACTTTTATGTGGACGCACTTTCTTGCTCAGCCCCAACCTCATCCCAGACACCAGCCCTCTAGGCAACTATCTTCCAGTCTTTCAGCAGGCTAGACAGGAAATTCGCCAGGCTGCTAATCTTCTCTTGCCTACTCCAGATTCCCAGCCACATGAA... | [
"Yes",
"No"
] | 0 | Yes | {"dim": "chromatin_state", "asked_state": "closed/repressive", "true_label": "H3K27me3"} |
447 | 4_histone_marks | Consider the chromatin state in K562 cells. Is this Human DNA sequence located in an closed/repressive region?
Sequence: TTGTACAGAATTGGCAAGAAGCCAGAACCCAGTCTCCAGAGGGACCCATTGGACAAGGAATTCAGGACTTTCTCTCCTCCCACTTGAGCTAAATAGGTAGAAGCCATTAGTTATACCCACAGCAATATCTGAACCACACTCAAATAAGCTGCCCCAGCCAGGGCACTTCAAAGGAGGCTAAGTGTGTTTAGCTTTTTAG... | [
"No",
"Yes"
] | 1 | Yes | {"dim": "chromatin_state", "asked_state": "closed/repressive", "true_label": "H3K27me3"} |
448 | 4_histone_marks | Is H3K4me2 the associated histone modification for this specific DNA sequence in K562 cells?
Sequence: CCCTTCAGTAAAACCTCGTGGCTGGTGACTTGCTGTTGATTCCAGTTCCTGCTGGAAGGCAGGTCCTGCCTTGCACTGGCCCACGTTGTCTCAGACTCAGCCACTCTGCCCTACCCTGCAGCCCTGGCTACAGGAGGCCTCCTGTGACCTGCAGGTGGCTGCCCTGTACCCATGGGAGGGATCAGCTCACTGAATGTGGAGTCTCTCTGACTCACC... | [
"No",
"Yes"
] | 1 | Yes | {"dim": "identity", "target": "H3K4me2", "truth": "H3K4me2"} |
449 | 4_histone_marks | Is this DNA fragment associated with an open/accessible chromatin configuration?
Sequence: AGGTTGTCCACCCTGGCTGATGGCTGCTCTACAGTCATCATTTTCCTCAAGAATTTGACCGTTAGAGCCTTTCTGACAATTATGTATGTAACTAAAATGTTTAACCTTTGAGTCATGTTCACAGAAACCTGTTGTTTGAGGACCTCTTTGACATGAAGCTAGGACTGAGCAGATGACCACAATGGTCATGGTGACCACAGCCCCTCATAGATGCTCTGGGTCCTTGTGT... | [
"Yes",
"No"
] | 1 | No | {"dim": "chromatin_state", "asked_state": "open/accessible", "true_label": "H3K9me3"} |
450 | 4_histone_marks | My hypothesis is that this DNA sequence from the K562 genome carries the H3K4me3 signature. Is this correct?
Sequence: CCGCCCGGCCCTGCCCAACGCCGCTGCAGAGGCCACCCCGGGACTGCGGCAGCCCCGCCCGGCAGCAGCGGGGGTGGGACGGGGGCGGCGGGAGCCGGCGAGGGGGTCTGCCCGTCCGAGCTTTCCTGGGCGCCGGCTCCGCCCCTCGACCCTTGGGGCCCAGGTGGGGCGCAGACCCCGTGGCTCCCCGCGGAGGCCACA... | [
"No",
"Yes"
] | 1 | Yes | {"dim": "identity", "target": "H3K4me3", "truth": "H3K4me3"} |
451 | 4_histone_marks | Could you verify if the following Human DNA sequence (from K562 cell line) is marked by H3K9me3?
Sequence: ACTCAGGCTGAAGTGCAATGATGCAATCATGGCTCACTGGAGCCTTGACCTCCTGGGCTCAAGTGATCCTCCCACCTCTCAGTCTCCTGAGTAGCTGGGACTACAGGCTCTGCTATCATGCCCGGCTAATTTTTTGTTTGTTTAGTATTTTTTTGTAGAGATGAAGTTTTGCCATGTTGCCCAGGACGGTCTTCAACTCCTGGCCTCAAGAAC... | [
"No",
"Yes"
] | 0 | No | {"dim": "identity", "target": "H3K9me3", "truth": "H3K9ac"} |
452 | 4_histone_marks | Look at this DNA sequence derived from human K562 cells: AGAGGAACCGGGGTGTCTGCTGCAGAGCCACTCCTGCTCTCTGTTCTCAGCTTCCGAAGGAGAACAGGGCCATAAAGCTGGGGTGTGGGAGGCTGAGAGGAGAGCAGGAAGCCAGTCCAAACCCCAATAAACTGCTGGTTGAATCGAATCACAAATAATTAGTCCCGATGGCCAAGACTGCCTCCACCCTCCTCTCCTGGGAATTAAAAGTCAAAGGGCAGAGCTGCTGACGCAGATGCCAGGGGAGACATGAGGCTTGGAAC... | [
"Yes",
"No"
] | 0 | Yes | {"dim": "identity", "target": "H3K9ac", "truth": "H3K9ac"} |
453 | 4_histone_marks | Is this DNA fragment associated with an closed/repressive chromatin configuration?
Sequence: GTCTCAAAAAAAAAAAAAAGAAAAGATGCTCAACACATTAGTTAGTAGAGCAATACAAGTCAAATTCACAATGAGATGCCATTTCCCAGCCACTGGAATGGCTATAGTCAAAACAGTGAACAACCACTAATGCTTCCAAAGTTTCTGTATTAGTCAGTTTTCACACAGCTATAAAGAAATTCCTGAGAATGGGTAATTATAAAGGAAAGAGGTTTAGTTGACTTACA... | [
"No",
"Yes"
] | 1 | Yes | {"dim": "chromatin_state", "asked_state": "closed/repressive", "true_label": "H3K9me3"} |
454 | 4_histone_marks | Is this DNA fragment associated with an closed/repressive chromatin configuration?
Sequence: TGTGAATCTATGCATGTGTTTGAGTGTGTCTATGTGAGTCTATGTATGTGAGTCCGTGTATGAGTGTACCACCCATATCTATGTGTGTGAGTGTCTGTATGTGTGAGTCCATGCATGTGTGTTTGTGTGTGTTTATGTGAGTCTACATATGTGAGTCCGTGTGTGAGTGTACCACCCCGTATCTATGAGTGTGTGTGTGTCCATGCATGTGTTTGTGAGTGTATTTA... | [
"Yes",
"No"
] | 1 | No | {"dim": "chromatin_state", "asked_state": "closed/repressive", "true_label": "H3K27ac"} |
455 | 4_histone_marks | Consider the chromatin state in K562 cells. Is this Human DNA sequence located in an closed/repressive region?
Sequence: ATGGACATGAAGCTTATATATAAAATCAATAGTTTTTTTAATTTTAGAAAATTTTTAAACGTATTTATTTCTTTAGGTTATGTGAACTATAAATATTTCAACTTTTTTGTTTGTTTCAAAGCATTAAGTTCCAGTATCTAACAGATATGTTCGTGTGTGTGCACATATATGTGCTTATATGCATTTGTATGCATGTCTT... | [
"Yes",
"No"
] | 0 | Yes | {"dim": "chromatin_state", "asked_state": "closed/repressive", "true_label": "H3K9me3"} |
456 | 4_histone_marks | Consider the chromatin state in K562 cells. Is this Human DNA sequence located in an closed/repressive region?
Sequence: CTCGTGTATCTGCTCATTCCAGAGCACAGAAGCTTGGGCCTTTCACACCAATATCAGAGCAGCTCAAACACTGACAGCATGTCAGGTGGACTCACCACAGGCTAACATGGGTGACAGGCTACCATCTGCTCCCCAGCCTCAGGCTGCCCACCCCTCCTTGCTCACAGCTCCAACCAGCTTGTCTTTCAAGTCCTCAGAC... | [
"No",
"Yes"
] | 1 | Yes | {"dim": "chromatin_state", "asked_state": "closed/repressive", "true_label": "H3K27me3"} |
457 | 4_histone_marks | Sequence: GATGCTGGAGAAAATTGACTCAAAGACACCCCATACACGCACGCACACAGGAACCCACATCCGAACAATGAGCGAGGTAGGAGCTGGGGAGAGTGGCGCGGGGTCACCGCCAGATGCGGGGTGTGGCAACCTCCAGGCGGCCAAAGTCTCTGACTTCCAGGTTCTTCTGTTTGCTTACTCCCTATCCGGGGGCCCAAGGCGCTGTCTCCGCCGCCCAAGCCCCGCGTAAACCTGGGTGACCTCGGAGACATCCGTTGGAGCATGAGTTCCCGACATCAGGCGGCGGCGGTGGTCCGGGAGAAACCCGGCG... | [
"Yes",
"No"
] | 0 | Yes | {"dim": "chromatin_state", "asked_state": "open/accessible", "true_label": "H3K4me3"} |
458 | 4_histone_marks | Is H3K27me3 the associated histone modification for this specific DNA sequence in K562 cells?
Sequence: GTAGGGACAGTGTCCCACCTCTGCGTCCCTCATGGGGCATGGCAAGGACCGGGGGAATGGAGGGCCTGCCTGGTCGGATCAGAGAGCAGGGTGGGGGGTGGCGGCGGTCTCAAAGAGGAAGGAAGGCCCCTAGGCTGGGGAAGTCGTGTTGATGCCACCACGGGCACAGCCAAGGACAAAATGCCCTGGGGGCCTCACGGGACCAGACCCTTGGG... | [
"No",
"Yes"
] | 1 | Yes | {"dim": "identity", "target": "H3K27me3", "truth": "H3K27me3"} |
459 | 4_histone_marks | Please check this DNA sequence from the K562 cell line: CCCTCCGCCATATTTATTTATTTTTTTAAGAGATAGGGTCTCTCTCTCACTCTGGCCCAGGGTGGAGTACAGTGGCATGATCATAGCTCACTGCCTGCTTGAACTCCTGGGCTCAAGTCATCCTCCTGCCTGAGCCTCCCGAGTATCTGGGACTACAGATGCATGCCACCAAGCCCAGCTAATTTTGTCTCATGTCTACTAAAAATTATTTTGTGAAGGCCCTCTGAACCTTAAGGGAAATCTGATGTTGCTCAGGAATCTAAC... | [
"Yes",
"No"
] | 1 | No | {"dim": "identity", "target": "H2AFZ", "truth": "H3K4me3"} |
460 | 4_histone_marks | Based on the epigenetic profile of K562 cells, would you classify the state of this DNA sequence as open/accessible?
Sequence: TTTCTCTCCTGTATGAATTATCTTATGTGTAGTAAGGTGTGAGGACTGGTTAAAGGCTTTGCCACATTCTTCACATTTGTATGGTTTCTCTCGAGCATAATCTTTTTTATATTCAGTAAGGTTTGAGAATTGGTTAAAAGTTCTGTCACATTCTTGACATTTGTAGAGTTTCTCACAAGTATAAATTCTTTTA... | [
"No",
"Yes"
] | 0 | No | {"dim": "chromatin_state", "asked_state": "open/accessible", "true_label": "H3K9me3"} |
461 | 4_histone_marks | Please check this DNA sequence from the K562 cell line: GGGCCCTCCCCCGCCCCTTCTTCTTGCCGTTTCATTCTCTCCTGGGCAGGCCCATGCATTCCCAAATCTGCTGGGCCCACACCTCCAGGGCCGAGCAGCCAGTGGCCATCTCCATGTGGCAGTTCCACAGGCCCCTCAGGTGGAGCTTATCCCCGTCCTGACACCTGACTTCCCTCCTGGGTTCCCATTTCAGGAAACACCCCACTGTCCACTCAGCTGCCCAAGCCAGACCGAGGTGCTTCCCTCATCCTTCACCAGTCACCA... | [
"No",
"Yes"
] | 1 | Yes | {"dim": "identity", "target": "H2AFZ", "truth": "H2AFZ"} |
462 | 4_histone_marks | Consider the chromatin state in K562 cells. Is this Human DNA sequence located in an closed/repressive region?
Sequence: CTGCTGTCTATCCAGCATCTGTCTCCCTTGCTCAGGTGGCCTGAGCCCCACTGTGGCCAAAACCTGACCCTTCCCACCCCACCGAGGACTTCAGTGTGGACTGACTCCTCCCCTGCACTGGGGTAAGGAGGAGGAGTGACTCTGAGATGACCCGGCCGCAGGGCCTCTTCCTGCCGGGCAACAACATCATCTGCTTCCC... | [
"No",
"Yes"
] | 0 | No | {"dim": "chromatin_state", "asked_state": "closed/repressive", "true_label": "H3K27ac"} |
463 | 4_histone_marks | Is this DNA fragment associated with an closed/repressive chromatin configuration?
Sequence: TTGCCCACCAACAACATTTTCCCACTACACCCCAAAAGGAAGAAGCCATCCTCCCTTAAACGCCTTCCGATCTGACCCTGGATGCTCAGGCCGCTTGGCTGTTCCCGGGTGCAGGGTCAGGGACCCTGGGAGGCTCCGAGTTGCTCAATGCCTCTGAGCACAGGCTGACTCTCTTCACAGCAATCTGGGGAATTTGGGCTGTTCTGGGGTGGAGCTGGGGACAACGG... | [
"Yes",
"No"
] | 0 | Yes | {"dim": "chromatin_state", "asked_state": "closed/repressive", "true_label": "H3K27me3"} |
464 | 4_histone_marks | Is this DNA fragment associated with an closed/repressive chromatin configuration?
Sequence: GAGGCACGCCTCAGCTGTCAAGGCTTAGGCGTGATGGCCCCCAGAGGTTACCCAGGTGCTGTCTCTTGCCTGTCTCTTCATTTTCCAGGATGGCAAAGTCCTGAGCAAATGTAAAGGCCTCCAGAGGTGGCCGTGAGGGATCACTTGCTTCCCGGGATGGCTGGTGGGGGACAGCCTCTGCAGGCAGGCCCGGGGGGTTCCCATCCTTGCTCCAGGCAGCACCACTC... | [
"No",
"Yes"
] | 1 | Yes | {"dim": "chromatin_state", "asked_state": "closed/repressive", "true_label": "H3K9me3"} |
465 | 4_histone_marks | Consider the chromatin state in K562 cells. Is this Human DNA sequence located in an closed/repressive region?
Sequence: GCCTATCCCAATCACATGCAAATGCAAACAGACATCTCCCCTCTGGAGTGGATTCTAGCGGATCCTCTAGTTGCCTGAATTACAAAGTTGGTCCCTTGGTTAAAGCATTCCTTCACTGGCTCAGCTTGCTGGAAAGACTTTTAAGAGAAAGAAGAGGAGACAGACCCCAAGGTACAGAAACCCGACCTACCACGGCTTG... | [
"Yes",
"No"
] | 1 | No | {"dim": "chromatin_state", "asked_state": "closed/repressive", "true_label": "H3K4me3"} |
466 | 4_histone_marks | Can you confirm that the K562 DNA sequence TTTGTTTTTGTCTTTAACACCCTGACCCACTTGATTTGCAGAACACACCAAAGAGGAGACCTCCAATTAAAATGAGGGAAAACAGAGGAGGAAGTTATGACTAAAGAAAGAGGAGACACAAATAAGCCAGAGCACGAGTCCCACGCACGCCGGGCTCACACGCTGGCGGGACTGTTGGCTCCGAGGCCGGCAGATGGGAGATGGATGCCCGCCTTCCCCAGGGAAGCAGAGACATCTCTGGGTGCCTTCTAGAGCAACCTGGGCCATCCTGCGGGCA... | [
"No",
"Yes"
] | 1 | Yes | {"dim": "identity", "target": "H3K27me3", "truth": "H3K27me3"} |
467 | 4_histone_marks | Sequence: TTGGTTTCCTTTAGTTCATTGGGCCTACTCCTTCCAGGATTTGCTGTTGTTGATTGCGGATGGCTATAGCCATCCATTTGTTTAATGACTTTTCCTATTTTTTGCAAAGACTATTTCTTGTTGTGTGTGGCCACTAAACTCTCTGTTCTTTTATATCAGTGGTTATCCAGTTAACTGTCAGAAATTTCCTTAAATACCTGGCTGGACACATTGGTTCATGCCTGTAATCCCAACACTTTGGGAGGCTGAGGTGGGCAGATCACTTGAGGCCAGGAGTTCAAGACCAGCCTGGCCAACATGATGAAACCCC... | [
"No",
"Yes"
] | 1 | Yes | {"dim": "chromatin_state", "asked_state": "closed/repressive", "true_label": "H3K9me3"} |
468 | 4_histone_marks | Could you verify if the following Human DNA sequence (from K562 cell line) is marked by H3K4me2?
Sequence: TGGTCTACACGTCTATCCATTCATCCATTTATCCTAGCAACCACCTTCCCCTCTGATTTATGCCAAGTCTCTGAGGACAGTCCAAGTATGTCTACAGATAGTGGGTGGGGTGACAGGGGAAATGTGTGAAGGAGGTCTCGCTTGCTTCATACTGCCCTGCTCCTTCCCTGAATTAACCCCTTTGCCCATCTAGAAGAAACAGAGGAGTGGCAG... | [
"No",
"Yes"
] | 1 | Yes | {"dim": "identity", "target": "H3K4me2", "truth": "H3K4me2"} |
469 | 4_histone_marks | Is this DNA fragment associated with an open/accessible chromatin configuration?
Sequence: CATGTGAAGACACAGTGAGAAGATGGCCACTTATAAACCAGGAACTGGGCCGTTGCCAACACTTAATCTGCCCTTGGACTTTTCAACCTTCAGAACCATGAGAAATAAATGGCTGTTGTTTATTTGCTACCCAGTCTATGGTTTTCTGTTACAGCTGCCCAAACAGACTAAGACAATAGCTAATGAGACAGACAAACAGACAAGGCAGATAGATAAAACTCTCCTTCAG... | [
"Yes",
"No"
] | 0 | Yes | {"dim": "chromatin_state", "asked_state": "open/accessible", "true_label": "H3K27ac"} |
470 | 4_histone_marks | In the context of the K562 cell line, does the DNA sequence ATTTGCCTTGCAAGAACTGTGTTTCTTAAGAGAGAACAAAAATGATACACATCAGAAATTCAGCACTACATACATAAAGAACAACTTCAGAAGGAGATGCCAGGTGGTTTGAATGAAAACACTTTTCTTTCTGGAGACAGTGTTTCTGAAGACGCTGAAGTCCAGAACTTCTTGAACAAGAAACTGTAGCATGGAAGCAAAGAATTTGAGATAAAAAGGAACAAATGCTGAAACCCTTGAACACACAAATGAAACCGGCC... | [
"Yes",
"No"
] | 1 | No | {"dim": "identity", "target": "H2AFZ", "truth": "H3K27me3"} |
471 | 4_histone_marks | Sequence: TAATAGTTTTATTCAGGCTCCTCTATGTGCCCCACATGGAGCTTGATGCTGGGTGTAAGCAGTAAAATAAATCAAAACGTGCAAATCTTCCTTTTAGGTCTGTGTCTAGATTAATTTCTTGATGTTTTCCAGTCTAGTGCAACCCAACCCAACAGATCTTGTCAAGGAATAGATGGCTATAGGTTCTGAAAATAAGAATGACTCCAAAGTCCAGACGCAGGATCAGGATGTTCCTTCTCTAAGAAGGTGGTTTAGTTATTTCTGGGAAAATATCCTAGAAAACCTTACAGTGGGATTAGGGACAGTTTAA... | [
"No",
"Yes"
] | 0 | No | {"dim": "chromatin_state", "asked_state": "closed/repressive", "true_label": "H3K9ac"} |
472 | 4_histone_marks | Based on the epigenetic profile of K562 cells, would you classify the state of this DNA sequence as open/accessible?
Sequence: CCGAGTGGACGGGTGGACCTAGAGGAGGCTGGCATTGCTGAGCCAGCAGCAGGGACACTAGACACAGGCAACAAGGGTAATGGAGCAGAACACAGGCTCTGGAACCAGCCAACATGGCAAAACCCTATCTCTACTGGAAATACAATAATCAGCTGGGTGTGGTGGTGCACGTCTGTAATCCCAGCTCCTGGGG... | [
"Yes",
"No"
] | 0 | Yes | {"dim": "chromatin_state", "asked_state": "open/accessible", "true_label": "H3K4me3"} |
473 | 4_histone_marks | Does this sequence exhibit features of closed/repressive chromatin (e.g., accessibility) in the K562 cell line?
Sequence: GCTAATGTTAGTATTTTTAGTAGAGACGGGGCTTCACCATGTTGCCCAGGCTGGTCTTGAACTCATGAGCTCAAGTGATCTGCTCACCTCAGCCTCCCAAGGTGCTGCGATTACAGGCGTGAGCTACTGCACACAGCCTGTATATTCCATTTATATGAAATGTCCAGAATAGGCAAATCCTAGAGGCAGAAAATGGAT... | [
"No",
"Yes"
] | 1 | Yes | {"dim": "chromatin_state", "asked_state": "closed/repressive", "true_label": "H3K9me3"} |
474 | 4_histone_marks | I have a DNA sequence CAGGCTCCTGGGTAATTTGGCTGGGCTGGAACAGGCTCCGGAGGAGGAATGCTGGTCTCCATTCTCATAACACACACTCCAACAGGGAGCCAAAGAATACCATGACCAGAAATTGGTCCACACTGCTCTAATTTCTCAAATAGATCCGCAGCAGAAAACACAGTTCTCATCCTCAACAGGTAAAGTCTATTGAAGAAAAATAATACTTGAAAGTCCCTTAGTTACAAATAAACTGAAGAAGTACATTATCCTCTCCCCACATACTCTCCACATAAGCATAAATACACCGAAAATACGA... | [
"No",
"Yes"
] | 0 | No | {"dim": "identity", "target": "H2AFZ", "truth": "H3K9ac"} |
475 | 4_histone_marks | I'm analyzing ChIP-seq data from K562 cells. Is the DNA sequence GAATTTTAATTGCACCCACCCTCAAGAAGAAGAGTCCACTTGGTATCATTTTTCTGTATATGGAGTAGTAAATTATAGGCAAATATGGCTACCAACAATTCCCCCATTCCTGTAAGTTCATGCCACTTTGTTTTTTACCATCAAGAGGTCAATCTATGTCCTCTTCTCTTGAACCTAGGCTGGCCCCGGGACTTATTCTGACCCATAGAATGCATGGAGGAGATCTTATGTGACTTATGGGCTTAGACCCTAAGA... | [
"No",
"Yes"
] | 0 | No | {"dim": "identity", "target": "H4K20me1", "truth": "H2AFZ"} |
476 | 4_histone_marks | Sequence: TCAAGCATTGCATGGTACTGGCGAGAAGCTAGCAAACACGTCTTTTCTTAGTGTTGAGACCAACTCCAGGTTAACAAGGTACAGAATCAACTGGGAGAGACTCCCATGGGTGAACAGGCTCTTTTTCTTTGTCTCCTCAATTCTGCTGGCTTGCTTCAAACTCAATTTTAGCTGGTGTGAGCCCAGCCCAGCTTCAGGCCTGCTCTCTGCAATCATTCTAATGTCATCTCAGCACACAAGGAGTTACCCACGGAAAGCCCACACCAGGAAAAACTTCCCCGAGTTTCTGTGGCCGGAAAATCTGTGTCAC... | [
"Yes",
"No"
] | 0 | Yes | {"dim": "chromatin_state", "asked_state": "open/accessible", "true_label": "H3K27ac"} |
477 | 4_histone_marks | In the context of the K562 cell line, does the DNA sequence AGGGACGAAGAGGGTATTTCCGGGACAGTTAGTGAGCAATTAGAGACCGGGGGCTAGAGCGAGCGAGCCAGCCCGAGCAGTCGGGAAGTGTTTGACCCAGAATTTAAACCACAGAGGCTGAAAATATAATTTTTAAAAATCAATATAATTGCTTTTGTAAGTGCTAAATACTGCAGAACTCTTTATAAGTTACTTTCTGATTCTTTATTCTGGGGCATAGTGACCAATAAGCATGCTGGCCTCCATTCCTGGCCCTTCTT... | [
"Yes",
"No"
] | 1 | No | {"dim": "identity", "target": "H3K4me2", "truth": "H3K9ac"} |
478 | 4_histone_marks | Is this DNA fragment associated with an open/accessible chromatin configuration?
Sequence: GGATCCAGTGCATAGGTCTTCATGCTTTCCTTTCACCCCAAGTGATTATCAACTTTGATTTTTCTCTTCAGCAATAACTCACTTGGTGTACCCCTACCTCAGGTACAGCTTTTCAACTTTGCAGCAAAACTGTACTTTCTAGTTCTTTTTGTATTTCAGATACCTTACTTGTAAAAGCTCTTTTGCTCTATGACCTGGCTCAAACTTAAACTTGGATTTGAAGTTAGAA... | [
"Yes",
"No"
] | 1 | No | {"dim": "chromatin_state", "asked_state": "open/accessible", "true_label": "H3K9me3"} |
479 | 4_histone_marks | Could you verify if the following Human DNA sequence (from K562 cell line) is marked by H4K20me1?
Sequence: CCAAGGGCTCCTAATGCTATGACCAAAGACTGAAGCTCTCTATGAGATGCCAGCCACTCAATAGTGCACTTTTTCTGAGAAGATATAAGACAGCCACTCAGAATTATGATGTAATAATTGGTAATGTGGGGAAGTAAATAAATGTCTCAAAGTTTTGCTTTTGAAAAATGACTAGTAAATAGTAATAACAAAACTGTTATTTATGGAGGGAT... | [
"Yes",
"No"
] | 1 | No | {"dim": "identity", "target": "H4K20me1", "truth": "H3K4me1"} |
480 | 4_histone_marks | Does this sequence exhibit features of closed/repressive chromatin (e.g., accessibility) in the K562 cell line?
Sequence: AAGAAATAAATGACATCCAAATTGAAAAGGAATGTCAAGGTGGCACATGCCTGTAATCCCAGCTAGTCAGCAGGCTTAGGTGGGAGGATCCTTTGAGCTCGGGAGTTTGAGTTGAGCCTCAGCAACAAGTAAGACCCAGTTCCCCCCACCCTCCCAAAAAAGTAAAAGGAGTAAGTAAAATTATCTCTATTTACAGAT... | [
"No",
"Yes"
] | 1 | Yes | {"dim": "chromatin_state", "asked_state": "closed/repressive", "true_label": "H3K9me3"} |
481 | 4_histone_marks | Is this DNA fragment associated with an open/accessible chromatin configuration?
Sequence: TCCAAAGGGTCTGGGCGCCGGGGCTGCAGTCTCTGGGTGAGGAGGCGGACGCGGGAAACCTGCTTCGGTCTCCATGGTTACGAGCCGCTCAGCGCGCAGGAGGGGGATTCAAAGGTTGGCGTTGCCACAGTAACCCTGGAGTGGAAGGAGACGGGGATTAGAGACCTCGCGGGAGAAATTAGACTAACAGCCTGGGAACTGGAGGGATGGAGGGTGTGCCGGAGGAATC... | [
"No",
"Yes"
] | 1 | Yes | {"dim": "chromatin_state", "asked_state": "open/accessible", "true_label": "H3K27ac"} |
482 | 4_histone_marks | Is H3K4me2 the associated histone modification for this specific DNA sequence in K562 cells?
Sequence: GGTGATTCTTTGCATGGGCCTGCAATTCAGCGATGAGAAAACTAAGAAAAAGGTTCCCCTGAGTCTCTCTGGACTTTCACTTAGGGGGAAAAGTAATCCGTACAAAATAATGACTTCCTGACCCCAGTTCCTGGAGAAAGCCGAGAGACAGCTTCTGCTGAACTCAGAAGTGCTGTTTTCCTACGTGAACTGGGGTAAAGGTACTGACCAGAGAGA... | [
"No",
"Yes"
] | 0 | No | {"dim": "identity", "target": "H3K4me2", "truth": "H3K4me1"} |
483 | 4_histone_marks | Is this DNA fragment associated with an open/accessible chromatin configuration?
Sequence: TACAAACACCTTGTGAGGGGTGAACATACCAAGGTAAGACTGGATGAGAATAGCAAAGTGCCTGGTTCATAAAAGAGGCCCAATGTCAATTAGTTTCATCTCCTTCTCCCTTCCTCCATTTACTAGACACTGAGGTGCAGACAGGTTCTGGACCAAACTGCTGACTGGCTGGGCTGGGCTTCCAAGTTCATCAGCTGAGTCCCAAATCCACGCCATTTCCACATGGCCC... | [
"Yes",
"No"
] | 0 | Yes | {"dim": "chromatin_state", "asked_state": "open/accessible", "true_label": "H3K9ac"} |
484 | 4_histone_marks | Can you confirm that the K562 DNA sequence TGCCAGTTATGCATGCATTTATTTGTGTATGCATGTCTGTATGTATAGCTCTGTGCAGTTTTTTTGTTTTTCTTTTTGTTTGAGACAGAGTTTTGCTGTGTTGCCCAGGCTGGAATGCAGTGGTGTAATCTTGGCTTGCTGCAATCTCTGCCTTCTGGGCTCAAGTCTCGTGCCTCAGCCTTCTGAGTAACTGGGATTACAGGTGTGCGTCACCAGGCCCAGCTAATTTTTTTTATTTTTAGCAGAGACAGGGTTTTGCCATGTTGGCCAGGCTGGT... | [
"Yes",
"No"
] | 0 | Yes | {"dim": "identity", "target": "H3K36me3", "truth": "H3K36me3"} |
485 | 4_histone_marks | Is H3K27ac the associated histone modification for this specific DNA sequence in K562 cells?
Sequence: TAGTGGTTGTTCTGTGGATTTGGCCTCTTGCTAGCTGTCAGGGCAGTAGTAGCCAGCCAGGTTCAAGGGGGACAGGGGGAGGATTTCAATTCTGTCATGTCTCACTGATGGGCAGCCTAGGGGTCCCCTGTAGAAGGGTGACTCTTGAGTATTGAGAAGACAATATACCTGCCTCTGGTCCCTGCATTTCTACTTTTTCTTAGCCCTGTCCTCCTT... | [
"No",
"Yes"
] | 1 | Yes | {"dim": "identity", "target": "H3K27ac", "truth": "H3K27ac"} |
486 | 4_histone_marks | Consider the chromatin state in K562 cells. Is this Human DNA sequence located in an closed/repressive region?
Sequence: CTTCCCTCAGAGCCTAGCGAGGGGGCGCGGCCCAGCCAGGAGAGCTGGAGAGGCAGCGAGGATGTTCCCTCAGAGCCTGGCGAGGGGGCGTGGCCCAGCCAGGAGGGCGGGAGAGGCAGTGAAGATCTTCCCTCAGAGCCTGGCGAGGGGGCGCGGCCCAGCCAGGAGAGCTGGAGAGGCCCGGAGGATCTTCCCTCAG... | [
"No",
"Yes"
] | 0 | No | {"dim": "chromatin_state", "asked_state": "closed/repressive", "true_label": "H3K9ac"} |
487 | 4_histone_marks | Does this sequence exhibit features of open/accessible chromatin (e.g., accessibility) in the K562 cell line?
Sequence: CCATTAAAGCTGAGCACATTAATCATAGTGGTTTTAAATTTCTGGTTTGATAATTTCAACATCTTTGCCATATCTGAATCTGGTTCTGATACTTGTTCTGTCTCTTCAAACTGTGGGTTTTTTTTTCTTTTTTGTATGTCTTGTTTTTGTTTTTGTTTTTCTTTTTTGGATAGCAGGAATGATACGTGTCCTGGGTAAAA... | [
"No",
"Yes"
] | 0 | No | {"dim": "chromatin_state", "asked_state": "open/accessible", "true_label": "H3K9me3"} |
488 | 4_histone_marks | Sequence: GTGCAGACAAAGCAGTAGCCTAAGGCATGTGCCCAGGGAGGCTCAACACAGCAAGGAGGCCAGTGTGGCTGGAGTAGAATGAAGTAAGATGGGAGTGGAGACAAGGAGGCTAAGTCAGGGAAATAAGACGGGGGAACAAGTGGTTTAGAGAAGTGAGTCTTCTAGTGTGAGCCCCAGATCTGCAGCCTCAGGTGCTGGGAGTTGTTAGAAATGCAGATGCTAAGACCTCAACCCCAGCTTTATTCAATCACAGGCTCTGGGGTTGGGGACCAGCAATTCTCTTTTAACAATTCTTCCAGATGATTCTGAT... | [
"No",
"Yes"
] | 0 | No | {"dim": "chromatin_state", "asked_state": "closed/repressive", "true_label": "H3K4me3"} |
489 | 4_histone_marks | Look at this DNA sequence derived from human K562 cells: AGGAACCAAACCCCTGCCACCTCCACTCACTCCCAGGGTTCCTCTTTGCAGGATGGTGGGGAGCGCAGGCACCAAGGCAGGAAGGCCAGGGCAGGAAGATGCCCCGCGTCCTTCACTTTCCCTCAGTGTGAGCACACCAAGTTCCCTCTAACCAGGAGAACAGGACCCTAGGCACCAAAAGTCAAGCATGAGGGACTGCCACAGGCAGTCTGGCAGGTGTCTTTCAGATGCTAAAGTGCCAGGGTTTGCAGGATACTTGGATG... | [
"Yes",
"No"
] | 0 | Yes | {"dim": "identity", "target": "H3K36me3", "truth": "H3K36me3"} |
490 | 4_histone_marks | My hypothesis is that this DNA sequence from the K562 genome carries the H3K9ac signature. Is this correct?
Sequence: TCAGAATTTATAAAGGGGTTTTCACATTTTATTCAGCTCTAACTTCTTTAACTCTGAAGAGTAAGAGAGTAATATGAGTGCACTTTTTAATAGTTTGCGTGAGGAAACAGGAAGTACACATAAAGCACTTCTGTATACTGATGCGTGATAGTTATCTCAAGGAAAAGCACTTGTGAGATTGTCTGAGTTGTGAGCTGAGCTT... | [
"No",
"Yes"
] | 1 | Yes | {"dim": "identity", "target": "H3K9ac", "truth": "H3K9ac"} |
491 | 4_histone_marks | Is H3K4me2 the associated histone modification for this specific DNA sequence in K562 cells?
Sequence: GGTTGGTCTTGAACTCGTGACCTCAGGTGATCCACCCGCCTCAGCCTCCCAAAGTGTTGGGATTACAGGCGTGAGCCACCGTGCCTGGCTAGCTTGGAGTCTTCTTCACTTCTCCCTTTTGTCTTACTTATATATGGTCTAGCAGATCGCATTAGCTCTGTCTTCAAAACACATCCAGAATCCAACCATGCCTCACCAGCTCCTTTGCTACCACTC... | [
"Yes",
"No"
] | 0 | Yes | {"dim": "identity", "target": "H3K4me2", "truth": "H3K4me2"} |
492 | 4_histone_marks | Is this DNA fragment associated with an open/accessible chromatin configuration?
Sequence: ACTCTCAGTCTTCAAATAACAGTTCTGTTTCTATCCATATCCAGCTGCATGGCAGAGCCTTTTAGGAGACGTTTGCTGTTATTACTGCCATATAAATGGGGTCTCTTGGGCTGCCTCCTCTAAGCAGGAAAGGGCCTGTTCTTAAGATAACTGGGCAGGAATTTTAATCCAAAAGAGAAGTGCTAAGGGTGATCTGTCCTTACCCAGGCACAGCAAAGGCAAGGGGAAG... | [
"No",
"Yes"
] | 0 | No | {"dim": "chromatin_state", "asked_state": "open/accessible", "true_label": "H3K9me3"} |
493 | 4_histone_marks | Consider the chromatin state in K562 cells. Is this Human DNA sequence located in an open/accessible region?
Sequence: GTGATATATATGAAACAATATATTGGGGCAGACTTTTATTCATTCATTCCTAGGACTTAGGAGCCCTGCTGGTGTTCTGTATTGTGCCCCATTTATAGCCATGATGGTAGAGTTAGATTTATGAAGCTGAGGCCGTGATCTTTATTTCAATCCTACTTGGTCGTTTGCTGGTCAGAAATGTGTCTCGTTCCTCTTTAGTGG... | [
"No",
"Yes"
] | 1 | Yes | {"dim": "chromatin_state", "asked_state": "open/accessible", "true_label": "H3K27ac"} |
494 | 4_histone_marks | I have a DNA sequence GAATGGACGTCCCTGCCTCCATCATACTACTCAGTCTGCTTCATGAGGGAAAACATGGTAAGCAGGTCTGGTCTCCCCAACAGCTGGGCATGCAGACAGCCCCAGGCAGACACTCTCTTTGGGCATCTATCCCGAGGGCAAAGGACCCTCTGGTCGGTTTGCAGGGTGAAGGGTGAGGTTTTTCCCTGGCTCTTTAAAAACTGAAAGCCAAGCCTGAGAGAAAACACCTCCACTGAGAACCCACCGACCCCTCTGGCGTGAGGGTCTGAGGTTCCTGGACACACAGCTCCCGGCAACG... | [
"Yes",
"No"
] | 0 | Yes | {"dim": "identity", "target": "H3K36me3", "truth": "H3K36me3"} |
495 | 4_histone_marks | Can you confirm that the K562 DNA sequence AAATGAAGGAGAGAACAACCAGAAAGGAGAGCTCCAGAGGAAAGGAACAAGTACAAAGGGTCTAAGAAAAAACAAATGTGGAATGTTCAAGTAACAGGATGAACAGAGGCAGAAGTGAGTAAGCAAGAGAGTGATGAGAAGTCAGATGAAAGTTGGGAAAGATAGTCAGGAGTTAGATCATTACTGAGCCTTTACAGGCCATTGAAAAGGATTTAAATTTTGGTCTGAGAGTGACTGAAAACTACCAAAGGATATGGAGCAGAAAGATGATACTTGA... | [
"No",
"Yes"
] | 0 | No | {"dim": "identity", "target": "H3K9me3", "truth": "H3K36me3"} |
496 | 4_histone_marks | Does this sequence exhibit features of closed/repressive chromatin (e.g., accessibility) in the K562 cell line?
Sequence: TCACCCAGAGGTCATGGCTCTGCGGCGGGGGCAGGTCACCAGGGGTCACAGCTGTGCGGTGGGGACAGGTCACCAGGGGTCATGGCTGTATGGTGGGGGCAAGTCGCCAGGGGTCACGGCTGTGTGGCGGGGGCAGGTCACCCAGGGGTCATGGATCTGTGGCAGGGACAGGTCACCAGGGGTCACGGCTGTGCGGCG... | [
"Yes",
"No"
] | 0 | Yes | {"dim": "chromatin_state", "asked_state": "closed/repressive", "true_label": "H3K9me3"} |
497 | 4_histone_marks | I'm analyzing ChIP-seq data from K562 cells. Is the DNA sequence AGGATCTTCCGTGGCAAGGCTGTGCCTTGGGCGTTTATCACCCAATTCCCTGTGGACACTTCGGTTGCCTCCATTTTTTCCCAACCTCACCCAATGCCATGGTGAATCTCCATGCTGACATCTCCCAGGTCCCCTTGGGGAAGCATTTTTGTCTCTCACTGGTGTCCAGTGAAGGGCAGCTGGGGTGGAAGGTCGGGTTACAGCTTGTTCTAAACAAGCAGGTTCCCCTCCTACACAGTCGGAAATGAGTAGGTC... | [
"Yes",
"No"
] | 0 | Yes | {"dim": "identity", "target": "H3K4me1", "truth": "H3K4me1"} |
498 | 4_histone_marks | Sequence: GCTATTTATTTCTATCTACCTCTATTTAAGGATAGAAAAAAGCTACAAACCCAAGTCTCAACTTGAAATCTGCCATTCTTGATAGGATTTAAATGTTTGTTTCAATGTGCATACAAAACTAAGAAGTTCCATTAAATATACTAAGAAAAAAGCAATTTCAGCTGGACACTGTGACCGTCATTACAAGGACAGATGATGGTGCTTCTTTCCGAAACAACTGTTCCACCGGCAGTGCAGGTCTAGCCGCTTTCCAGCGAGCCAGATAGTGGTCTCAACTTAACACTCAAACTACAAGGTATGTCATCTGGAG... | [
"Yes",
"No"
] | 1 | No | {"dim": "chromatin_state", "asked_state": "closed/repressive", "true_label": "H3K27ac"} |
499 | 4_histone_marks | Is H3K4me3 the associated histone modification for this specific DNA sequence in K562 cells?
Sequence: AGAATAATGATATTTGCCATTATGTCTGCTTTATAGTGTCCTCACTATGTATGTATATTAGTTCATTTTCATGCTGCTGATAAAGACATACCCAAGACTGGGCAAAAGAAAGAGATTTAATTGGACTTTGAGTTCCATGTGGCTGGGGAAGCGTCACAATCGTGACAGAAGGCAAGGAAGAGCAAGTCCCATCTTACGTGGATGGCAGCAGGCAAA... | [
"No",
"Yes"
] | 0 | No | {"dim": "identity", "target": "H3K4me3", "truth": "H3K9me3"} |
500 | 4_histone_marks | Consider the chromatin state in K562 cells. Is this Human DNA sequence located in an open/accessible region?
Sequence: CACCGTGCCCGGCCTGTCACTGTTTTAACTAGTCCTCAATTTGGCCCGGTGTTAGAACCCTGTCTTCAGAGTCAAGTCCCACTTCCTGAGGCAAGTCCTGGCTCCTACCTCAAAAGTCTAAGGGCTCAAGGTCTGGTGGCACCACTTGTTCACTGGGTAACTCTGGGCAAGGGGCTAAGTATCCAAATCACAGCCTCTTAC... | [
"No",
"Yes"
] | 0 | No | {"dim": "chromatin_state", "asked_state": "open/accessible", "true_label": "H3K27me3"} |
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