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Karl28
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CellVerse

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[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ASAP1 FYN PRKCH IKZF1 BCL2 CSGALNACT1 RGCC SEPT9 RB1 GRK5 AC068896.1 MED12L SYNE1 FOXP1 LINC01588 AC093010.2 ELOVL5 PTPRJ LINC00598 ARID5B PPP2R5C GIMAP8 PIP4K2A ARHGEF3 CD4 NCK2 PTK2B CARS2 RNF216 TSPAN14 BCL11B TTC33 TBC1D5 AL157373.2 CFLAR LINC01004 AC016831.7 ATXN7L1 MYCBP2 VPS13D CYTIP TNFSF8 RBPJ BCOR LINC00649 UBAC2 CCDC6 CHST11 CCDC88C CYTH1 CBX8 ITPKB TLE4 LIPA FOXN3 AHR RSBN1 KIFC1 RIPOR2 NFATC2 ZNF395 TAF1 LYRM4 MLLT10 MPP7 ICA1 TSHZ2 DLEU2 ZMIZ1-AS1 KLF12 MICAL2 MACF1 TRERF1 GLB1 PSD4 MYH9 TIAM1 ATXN1 HRH2 SH3PXD2A OTUD4 SUSD6 ZNF831 ITPR1 PPM1K SPTBN1 KLHL32 TNFAIP8 SPAG8 OSBPL3 AL390957.1 AC009126.1 CATSPERG H3F3B INPP5D NEMP1 RARG BICRAL CDC14A CAMK4\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Effector CD4+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ARHGEF3 ARHGAP15 HIVEP2 LINC01588 CARS2 BCL2 BACH2 PRKCH ANKRD44 KLF9 RAPGEF1 NCK2 FOXP1 ATXN1 AC016907.2 PCED1B RPTOR TIAM1 ZCCHC2 FYN ACOXL KATNB1 ATP13A1 OXNAD1 SEMA4D ATF2 ST6GAL1 CBLB PPP2R5C ABHD15-AS1 CHST11 SPTBN1 SUB1 LDLRAD4 PATL2 MAP4K4 CSGALNACT1 ZNF217 PHF19 MBNL1 TGFBR3 PKNOX1 MGAT5 CDKN1B COMMD6 MMS19 SOS1 JMJD1C RUNX1 AC076966.1 HNRNPA0 CASP8 C14ORF93 CANX RFX3 STK17B TRAT1 NFATC2 MAP3K11 BICDL1 PMEL AKAP13 SERF2 ZNF83 LRP11 ATG5 SLC40A1 RAB7A ARMC2 ZDHHC20 MAML2 L3MBTL3 B4GALNT3 HEG1 AC009226.1 LIPA LRRFIP1 FKBP5 TBC1D2B SERTAD2 MBP AL392046.1 TSPOAP1 FYB1 KLF11 TGOLN2 LRRC58 GRK5 KIAA1211L ECE1 RNLS MIR3681HG DPP4 ARHGAP5 PTP4A1 AC069368.1 CDK8 CYTIP DLGAP4 AL449266.1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Effector CD4+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: UBAC2 KLF13 TNFAIP8 RIPOR2 PTPRC ST3GAL1 NFATC2 TGFBR2 GPRIN3 PRKCH IKZF1 ATXN1 BACH2 TMEM131L CELF2 NOSIP HDAC4 RUNX3 HIVEP3 ELOVL6 RORA-AS1 PPP2R5C ABHD15-AS1 FAM117A AC068896.1 TSPOAP1 FAM107B HECW2 ITK RUNX2 CD96 MED12L TSPAN14 SEMA4D MGAT5 LINC01588 GATAD2A PYM1 PIP4K2A UBXN11 AC009126.1 PLXNA4 IL7R XKR6 BCR CFLAR MNT LINC00598 PLCL1 SCML4 PCED1B CD247 FAM129A FOXP1 ATG5 ASAP1 NCOA7 EPHA4 AL390957.1 AL023755.1 CBLB ING3 CIC SEPT9 SYNE2 ZNF831 PITPNC1 RMI2 GCH1 SIN3A LPP OXNAD1 PDE8A RGS10 STAG2 TRABD2A ARSG DAPK2 AHR MXI1 GNG2 AC093827.5 CD2 TG CASP8 AC022217.3 XYLT1 ARRDC3 CSGALNACT1 ARMC2 PPP2R2D MAP3K1 FYB1 CDC14A ARNTL SESN1 CD44 ARHGAP26 RARA PDE4D\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Effector CD4+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 ANKRD44 RUNX1 MAML2 AUTS2 UBAC2 SCML4 PIP4K2A FAM102B ITK SEPT9 PARD3B TRABD2A FAM107B LINC01588 ANK3 SEMA4D IKZF1 TGFBR2 PTPRC FYN MYH9 PRKCH KLF13 RASSF3 SLC38A1 RIN3 AC016831.7 CD6 RPTOR MED12L FYB1 BACH2 ETS1 FLI1 BCL2 ARHGAP15 TG MCM9 STK17B AC008691.1 SUN2 PDE4D TRAJ28 CD226 PTPRO HOOK2 ACOXL UMAD1 AKAP13 OGDH UST HDAC7 RGS9 ATG5 MBNL1 BCAR3 HIVEP2 GPRIN3 ZNF131 RAP1A ITPR1 LINC02384 SH3PXD2A TIAM1 ZBTB2 AP000311.1 NKIRAS1 AL160408.2 EIF4G2 PPP1R10 MIR29B2CHG C15ORF53 ARHGAP26 TMEM87B RAB27A TTC33 TSGA10 SAMD3 RNF157 AC022126.1 CD82 LINC00649 MAP3K11 VOPP1 ATXN7L1 WWOX SORL1 ZFP36L1 LFNG ZFYVE28 RARA GPBP1 PVT1 CSGALNACT1 BORCS5 CELF1 MIR3681HG PRKCA ZNF217\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Effector CD4+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: AC016831.7 PTPRC KLF12 CSGALNACT1 AKAP13 AL139383.1 TG RHOF CHST11 RAI1 CDC14A AC068896.1 BCL2 RIPOR2 ADAMTSL4 RPTOR HDAC4 ATXN1 ARHGAP45 FAM19A2 RPS6KA2 EPS15L1 LNPEP OPRM1 JMJD1C HNRNPUL1 UTRN NCAPH2 ITPKB IL7R SAE1 ARID4B BACH2 NFATC2 FAM107B PNKP MFHAS1 ARID5B MPC1 ZBTB20 ARHGDIB ASTL SEMA4D NFKB1 AC011462.1 GATAD2A KLF13 BLVRB ANKRD44 C12ORF4 MARCH8 NDRG1 CDKN1B SORL1 OGDH HRH2 SOD2 PATL2 LINC01825 AC079313.2 HIVEP2 RAD52 HNRNPF LTBP4 GHITM GAK SEPT9 PTMA OSBPL3 UBALD2 ANAPC5 AC243547.3 AHR GBP1 HOOK2 TNFAIP8 STXBP1 RMI2 ABCB9 CEP89 CPEB2-DT ETS1 MYOM2 VPS36 IKBKB GPBP1 RBMS1 TMEM131L MAST4 DYRK1A FHIT KCNQ1 RFX2 MAML2 RTKN2 STK10 PACS1 YWHAQ ZCWPW1 TBC1D14\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Effector CD4+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: KLF13 PRKCH LIPA IKZF1 PDE4B HIVEP3 CDC42SE2 ITGA6 LINC01588 LINC00598 CGGBP1 MLLT3 FOXN3 TGFBR2 PCAT1 CCDC88C PIK3R1 ANKRD44 ARMH4 NIN FOXP1 BACH2 TRAT1 AC010894.3 TOX MIR3681HG SSH2 CYTIP MAML3 TNKS FAM107B ITPKB AC110275.1 POMT2 LDLRAD4 BACH1 TBL1XR1 FYB1 MAML2 CDCA3 CELF2 BCL2 FAM19A2 PPP3CA AKNA ADAMTSL4 AL035530.2 PYM1 TSPAN14 STAT1 OXNAD1 PVT1 NDUFAF6 SPATS2L UXS1 ARID5B ALDH1A2 RBMS1 TTI2 TNFAIP8 FAM102A MBNL1 FAM174B ZNF131 GRAMD2B SLC38A1 NBN AC079385.1 SOD2 ZNRF2 CSK ETS1 RBL2 EEA1 SMAD2 LRCH1 PCED1B STT3B L3MBTL3 AC016831.7 RAD51B PTK2B ST3GAL1 C15ORF53 CACHD1 TSGA10 ELMO1 IKZF2 TUT4 CHD7 TMEM131L ELK4 IL2RA GYPC DIP2B RASSF3 ST8SIA4 ATP2B1 SCML4 MGAT5\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Effector CD4+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PRKCH PATL2 ST7L UBAC2 ROCK1 BCL2 AL355916.3 AP000911.1 AL136368.1 ITPKB HACL1 FYB1 FAM102B B9D1 HSPD1 ZMIZ1-AS1 ZPLD1 CASP8 PIGK CDC27 INPP4B EBAG9 LINC02341 ARAP2 TSPAN14 MTR AL392172.1 AGO2 ZCCHC2 AC020911.2 BCL11B MDFIC MPP5 ELOVL3 TMEM245 SETD3 CRYL1 WDR1 CHRNA6 RUNX1 PTGER2 PDE4B CNOT3 RHOH AC096920.1 PRRC2B CCDC88C AC025263.1 OSTM1 SERGEF EGLN1 CNDP2 HUS1 LFNG SGMS1 HMGCS1 MIA2 TRRAP GNPTAB TRAJ28 TPRA1 NFE2L3 ZNF831 PRMT5 TMEM123 DGKH ATP8A1 INTS9 EML2 PDLIM7 SLC37A3 FBXL17 HSPA13 ARF4 SIAH3 KIF2A STT3B TIFA FBXO43 OGDH AL627171.1 RASSF3 ZGRF1 PCM1 ASH2L MPP7 FKBP5 IFNG-AS1 TANGO6 FA2H PCNX1 APOLD1 HBS1L PRKCB LINC01366 SBNO1 TRAF5 AL627171.2 TRIM35 SGK1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Effector CD4+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: BCL2 HIVEP2 ST6GAL1 BACH2 LINC00598 PIP4K2A TGFBR2 MAML2 SCML4 CDC42SE2 PCED1B AL390957.1 GLB1 TIAM1 GRK5 AHR HNRNPUL2-BSCL2 DCAKD EPC2 VMP1 HEBP2 CHFR AC016831.7 TMEM131L CELF2 CARD19 ITGA6 CFLAR PVT1 DUSP16 UTRN LEPROTL1 ORC4 MED12L TG MYO5C TBC1D5 DLEU2 BORCS5 CSGALNACT1 AC009126.1 PSIP1 PATL2 RB1 CHST11 FOXP1 ARHGDIB TRIP11 HECW2 SETDB2 ST3GAL5 STK10 CRTC3 MAST4 FAM19A2 CCNI2 RAPGEF6 CRADD TSPOAP1 RGS3 SAMSN1 MAP3K14 RFTN1 FKBP5 CPOX CNOT6L DUSP13 C1QTNF6 MAN1A1 PLCL1 FBXO11 CASP8 ITPR1 XYLT1 EVL ELOVL5 KLHL21 CROCC FMC1 PICALM ATXN7L1 NOSIP GALM FAM69A TMEM150B CCR4 ALOXE3 NR4A2 DOCK9 MARCH8 ZYX ERBIN USP12 RASSF5 RFFL NFKB1 ABI1 GSK3B ZNF639 RASSF3\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Effector CD4+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ARHGAP26 NFATC2 AC068896.1 TSPOAP1 FOXP1 CELF2 TCF7 ATXN1 DLEU2 AC009126.1 RTN4 TNFAIP8 IL32 RUNX3 KLF13 CIC FYN OSBPL3 SMG6 ELOVL5 AL691403.1 KCTD9 ARSG AKAP13 CHST11 SIVA1 MGAT5 AC024592.3 AC069368.1 DIP2C EIF4G1 ABHD15-AS1 LINC01588 ASAP1 LINC02332 PATL2 TRAJ28 FKBP5 TBC1D5 PRKCQ PRKCH TRABD2A TMEM131L HDAC4 PPM1B ACOXL ST8SIA4 PIP4K2A MAP3K3 HOOK2 JARID2 ETV6 NUB1 JAML FNIP2 SMIM20 G3BP2 CCDC66 AC009185.1 UMAD1 IL7R ZCCHC24 TRIM24 ZCWPW1 AAK1 CEP85L DLGAP2 ACAP2 APBB1IP ADCY7 INPP4B ETS1 SYNJ2 ZC3H4 NFKB1 MNT RNF38 AC022916.1 DNM2 RMI2 FYCO1 CYTH1 PHF19 AC034102.4 LFNG ZNF687 RASSF3 IGSF9B MCOLN2 PGRMC2 CCND3 LSM4 NSD3 SMARCA5 VPS13D ZGRF1 TRMO TXNRD1 TTC33 IL21R\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Effector CD4+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: AKAP13 TNFAIP8 SEPT9 PITPNC1 ST3GAL1 DRAIC ATG5 HDAC4 UBAC2 SEMA4D VMP1 TEX264 RPTOR OSBPL3 PRKCQ LINC01126 BCL2 ITK PPP1R12A HDAC7 TPRG1 GSK3B LPIN2 AC016831.7 CLASP1 NEAT1 PIP4K2A FYB1 SFMBT2 DIP2B MED12L MGAT5 NFKB1 LINC01934 PREX1 SKI TG GNB2 CYTIP ATP2B4 RALGDS GRPEL1 RIPOR2 IKZF3 C15ORF53 AC009126.1 HIVEP2 P2RX4 RBM20 CEMIP2 SERINC5 L3MBTL3 CHI3L2 PDE4D DLGAP1 BCAR3 FAF2 FAM117A GAS2 RNF44 KLF9 CCDC88C GLB1L MYH9 MALT1 PLEC TRABD2A OARD1 SIL1 PALM2-AKAP2 MOSPD3 ARID5B AL139246.3 RAB1A PIK3CD BICRAL GSR LFNG ATXN7 WDR1 AL359736.1 CCND3 FRYL TMSB4X ACTB KLF13 RB1 EYA3 C9ORF16 ST6GAL1 SPEF2 FNDC3A RUNX2 KAT6B AC010894.3 ZBTB20 ERN1 SLC35D1 ARHGDIB ZNF487\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Effector CD4+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ATXN1 RUNX1 RIPOR2 PTPRC CIC ST3GAL1 GRK6 AGO2 ZNF846 ARHGAP10 PITPNC1 ARHGEF3 SEPT9 SNTB1 LEF1 THEM4 MACF1 PPP2R5C RBPJ TPRG1 CDH23 GAS5-AS1 PRR5L NEDD9 AGFG2 SLC2A1 PDE4D TRAJ28 ATG5 MAP3K5 FKBP5 RUBCN MED12L ARHGAP26 PRKCH AHR SYNE2 AC009126.1 BACH2 TSPAN5 BICRAL CDC14A CCNI CDK17 TNRC6B EIF3H RAPGEF1 LCP2 NEAT1 UBAC2 DLEU2 BCL2 SH3KBP1 ATG16L1 PLEC GNG2 RPN1 SPRY4-AS1 NCOR2 FLNA FYB1 NLRC5 AP000787.1 AC007384.1 KIAA0319L GPR68 GTDC1 PATL2 ZFP36 IQGAP2 STK10 BTBD19 SPON1 DOCK10 BCL10 IKZF1 CD82 CDKN1A SPEF2 HMCES ITGB1 ZBTB20 TRIP13 CCDC9 AFAP1 CDC42SE2 MTSS1 DLG5 HDAC4 TRERF1 NAV2 ELL TEX264 KLF10 PDE4A HIRA FAM241A BCL9L IFFO2 MIB1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Effector CD4+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RUNX1 MAML2 UBAC2 IKZF1 ELMO1 KLF13 PRKCH AC016831.7 TBC1D5 AKAP13 NFATC2 PTPRC PVT1 FYN STAT4 LINC01588 SORL1 LPIN2 EEPD1 PRKCQ PDXDC1 OXNAD1 RORA SEPT9 RPS6KA2 ZCCHC2 ZBTB20 ATG5 ELK3 LINC01934 BCL11B OSBPL3 NDUFV2 UMAD1 JMJD1C ARHGEF3 PTK2B SPG11 ATXN1 RPTOR ST6GAL1 AC016907.2 DUSP16 TCF7 C15ORF53 AC093423.3 ST3GAL1 PLXNC1 MCM9 MACF1 ZNF516 AHR ATXN7L1 LDLRAD4 TSGA10 PIK3IP1 LEF1 TRABD2A GATAD2A TNK2 ZNRF2 CCDC88C NCOA7 CCR7 GLB1 AC025159.1 PIK3R1 CHD6 TRAJ28 TECR RIPOR2 ARMH4 CDK13 DLEU2 SLC38A1 CLEC2D AC069368.1 NEAT1 TMEM45B CMTM7 H2AFV IL7R MBNL1 SLC1A4 TNIK ANKH CARS2 SH3BP5 CDKN1B HDAC4 LINC01126 SDR42E2 ARSG VPS13D PIP4K2A MAP3K3 BORCS5 MLEC INPP5A PDE4D\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Effector CD4+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: LINC01126 ETS1 PPP2R5C FGFRL1 PRKCH CAMK1D NEAT1 ITGA4 MIR3681HG UBAC2 ELMO1 ATXN1 TNFAIP8 LIPA IKZF1 LARP1B PVT1 DIP2C TIAM1 BCAR3 SCML4 LINC01003 RAP2A SPEF2 GLB1 LINC01350 SNTB1 GTPBP1 TLDC1 RAB27A HIVEP2 PRPF40A TCF7 SEC31A HIVEP3 NOL4L AL390957.1 AC005775.1 ZBTB2 ARL4C RB1 ARID5B PYROXD1 SH3KBP1 DRAIC HDAC4 ZC3H10 AL451062.3 ASAP1 TTC39C REV3L AC009486.1 MAP3K5 MARK2 UTRN MYOM2 RAD51B AKAP13 DOCK10 CDC42SE2 ELF1 TOX2 LRRC8C-DT PAG1 CCR4 ACIN1 CCDC88C BCL9L LRIG1 DAD1 RORA-AS1 SERINC5 TLE3 TNRC6B CD247 STK24 MAP4K4 ATAD2 BCL11B Z84485.1 ST8SIA4 ZNF331 SVIL CAB39L DAGLA SGCE KSR1 WDR1 FBXO48 FOXO3 MALAT1 SIL1 GADD45B ADCY7 SARS2 IQGAP2 FAM160A2 ZMYM2 ST3GAL1 ABHD15-AS1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Effector CD4+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: INPP4B ITPKB AC016831.7 FOXP1 BCL11B BCL2 PIP4K2A ANKRD44 BORCS5 RAD51B MAML2 RIPOR2 TG CHST11 UBAC2 HIST2H2AC OARD1 IKZF3 TCF7 NEAT1 SEPT9 INPP4A PHF19 ARID5B HIVEP2 PVT1 ANKRD11 MACF1 KLF13 ARID1B AC010894.3 SLC39A10 MSI2 HSP90AB1 GNG2 NR3C1 CCDC88C CARS2 RERE ADAMTS17 GRK5 EHD1 AKAP13 ZMIZ1 SCML4 SERINC3 CDKN1B TRERF1 AC091114.1 SLC38A2 DRAIC RPTOR CCND3 NPAT GFOD1 TNRC6B CFL1 STAT1 ASAP1 IL6R AL137145.2 PREX1 STK10 PRKCH EVI5 CDK6 ARHGEF3 AKT3 GATAD2A HOOK2 LINC01588 PRKCQ AGO2 FAM174B ATP8A1 SERINC5 CASP8 ICK APOLD1 SAR1A UBASH3B BCL9 MAP3K3 PLAGL1 RFX3 RBMS1 CCDC114 RASSF3 DAAM1 RNF215 TIAM2 CXCR4 P2RY8 ARRDC3 AL355315.1 CELF2 BCAS4 CDC42SE2 CD58 LPP\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Effector CD4+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: AGPAT1 CEMIP2 ZMIZ1-AS1 AFTPH CD96 CDC42SE2 AC145422.1 ZNF718 AL359736.1 HSP90AA1 AKAP13 HLA-B USP34 SEC22C ZFYVE28 PTPN1 WDFY2 SLC5A6 TGFBR2 PPP2R5C PPP3CA TNIK MIR222HG LACTB2-AS1 SNTB1 ZNF395 AL162377.3 LRRC8C-DT BBIP1 OXSR1 AC034114.2 CHD7 TES SMG6 SARAF HSPD1 G3BP2 SREK1 IQGAP2 RYR1 PARK7 TOGARAM2 AK2 BTBD11 MKKS AC005775.1 COA1 TMC6 ERN1 RALBP1 FAM85B ZNF131 PLOD3 AC010271.2 RUBCN PDIA4 PAG1 LYRM4 TBCCD1 NQO2 MFSD12 MCF2L GAS5-AS1 OSBPL11 SPTBN1 SLC7A6 ATXN1 GPR89B NDUFV2 JARID2 TTC33 GMFG CAMK2G SPICE1 PRR14L SAMD3 ACIN1 MKL1 PIK3CD IL32 VAMP1 ZBTB24 TLE4 CASP8 AC010271.1 GIMAP7 MRPS27 CCM2 MACF1 DSCAML1 ELMO1 SH3BP5 CAMK4 AC067968.1 TRAJ28 RNF111 VASP STK11 SGK3 IGFLR1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Effector CD4+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: AC016831.7 HIVEP2 BCL11B LINC00598 KLF12 FOXP1 ANKRD44 MAP3K5 TGFBR2 IKZF1 HECW2 SUSD6 MAML2 ITPKB IL7R MBP PIP4K2A FAM107B CCND3 FYN LEF1 FAM117A DOCK10 CHST11 ARHGEF3 RUNX1 PRKCH RAD51B SYNE1 SMG6 ATXN1 PPP2R5C RIPOR2 NFE2L2 NEAT1 ITK UBAC2 UTRN MAP4K4 CD2 CRYBG1 ARHGAP25 TMEM131L CD82 STAT1 CCDC88C FSIP1 AC093010.2 SAMD3 PDE4B IMMP2L TNRC6B CMIP ELF1 MED15 MDFIC JADE2 ATG5 RHOH CDC42SE2 JMJD1C ATM TRERF1 C15ORF53 PARP16 UBE2D3 PPP1CA BCOR NEK7 LINC00861 DRG1 FOXN3 PTPRE KPNA3 PATL2 PTPRC CDC14A DRAIC AL162377.3 GNAI2 LINC01358 ARHGAP15 SNRK YWHAQ PIM1 SELPLG OSBPL3 PRCP NPAT RANBP3 WWOX SPTBN1 INPP4B ST3GAL1 TG ADAM19 DUSP10 ARID1A NKIRAS1 CAMK2D\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Effector CD4+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 PRKCH RPS6KA2 UBAC2 CYTIP PNKP AC016831.7 LINC00598 MED12L RUNX1 KLF13 TMSB4X AC068896.1 IKZF1 HIVEP3 SPTBN1 HDAC4 FYCO1 SIN3A IKZF3 BACH2 ST3GAL1 CELF2 ATXN1 TIAM1 XPO6 JARID2 TPP2 PPP2R5C LINC01004 TCF7 CSGALNACT1 MAML2 RAD51B PXYLP1 CD226 MBNL1 TLE4 RUNX3 PITPNC1 IMMP2L TBC1D5 PDE4B IFNG-AS1 CDC42SE2 VOPP1 TRAPPC10 PUM2 UXS1 PDE4D ATG5 RPS6KA1 RFX3 RMI2 TRIO MAP2K3 PHF19 FAM214B ZNF141 LMNA STK10 AL163932.1 AAK1 GRK6 UBE2D3 PSMB1 AC096920.1 DCTN3 MGAT4A GPRIN3 ASB16-AS1 AC022558.2 TRABD2A LCP1 OGDH CD44 TSPOAP1 ARID1B ITK MAPRE2 FAAP20 IER5 SPRY4-AS1 TBL1XR1 EPB41L2 AL451062.3 MVB12B FRYL FKBP5 AKAP13 RAB11A ARSG RIPOR2 KLF12 C3ORF18 GPR68 PRKCA MEX3C LEF1 UGCG\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Effector CD4+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PRKCH BCL11B ANKRD44 STK17B HOOK2 PVT1 CDC42SE2 LDLRAD4 C1ORF112 AC007513.1 IQSEC1 TRIO IKZF1 ZFP36 MIR181A1HG OGDH TRABD2A HMGB1 AC068896.1 AL669918.1 ETS1 TEX14 OTUD5 APBB1IP LINC00598 ZNF132 CDC14A TNFAIP8 ANXA6 TTC33 DNM3 MXI1 PITPNC1 CD247 MBD4 TSPAN14 ICAM2 STK17A ICA1 KLF12 TLDC1 GRB2 BCL9 CELF2 SEPT9 UBALD2 C1ORF109 IMMT SARDH TLK1 TTC39B AC010894.3 CASD1 AKAP13 STAT3 KLF7 MIR3681HG PRKCB HIVEP3 CRYL1 COQ10B RHOH AC093277.1 IL7R PRRC2B JARID2 C15ORF53 NDUFV2 FYN OXNAD1 CDHR3 RNF216 ST6GAL1 SIRPG NTNG2 RAPGEF1 PPTC7 CENPM RASGRP1 SREBF1 AC234778.2 G3BP2 KBTBD8 ANKRD11 ATAD2B RCSD1 BICDL1 CFAP36 AC093423.3 SNTB1 EIF5A CETN3 THUMPD3-AS1 RARA TRAJ28 CRTC3 MTMR4 ADSL ZNF846 SMG7\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Effector CD4+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: AC016831.7 CTLA4 IKZF1 IL2RA PATL2 HIVEP2 RABL3 FOXP1 CD28 RPTOR ATG5 TSPOAP1 EVL SIN3A ABHD15-AS1 LINC00649 CELF2 VPS26C STK10 NCOA2 RORA RPS6KA5 RAP1GAP2 CORO1A FLNA AKAP13 VMP1 MIB1 DOCK10 STAG2 ATXN1 SYNE2 MIA2 SNX10 ATP2B1 SMAD3 UXS1 LPXN KAT6B INPP4B TG SERTAD2 ARID5B WDFY1 LCP1 GIGYF2 CDC42SE2 RHOH WWOX MGAT5 PTPRC NUP153 ANKRD44 MBNL1 ELMO1 DNAJB6 GLS BCL2 NFE2L1 PIP4P1 PALM2-AKAP2 SLAMF1 HNRNPUL1 PPM1B NEMP1 SARNP AL139807.1 ABL1 ARHGAP45 KIF2A CWC25 NCAPH2 RBMS1 SEC22C TRIP11 TTC39C LIMS1 ATXN3 MRPL42 ATP5MC2 TRMT10A GLB1 CACUL1 PHF19 GSTO1 TMSB4X AC096920.1 RBM23 EIF2AK3 CTC1 STAMBP NUMA1 AC107214.1 USP8 CYTH1 COX7A2L P2RY8 UBE2N RFX2 CXORF65\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Effector CD4+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RBM15-AS1 AC010894.3 PIP4K2A MBNL1 FOXP1 TRABD2A ARHGAP26 LINC01588 ITPKB PRKCH AMN1 CBLB SH3BP5 CHST11 TPR CDC42SE2 CFLAR SPTBN1 CYTH1 THUMPD3-AS1 ANKRD44 PVT1 RAP1A ARID5B MED13L ARHGEF3 FAM117A FOXN2 AC016831.7 VMP1 PJA2 SOD2 GNG2 NEMP1 SEC22C RETREG2 CD247 ATP2B4 KLF13 ITPR1 IKZF3 STT3B GHITM MAML3 RPTOR MIR3681HG STK17B MGAT5 CCDC88C PDE4D ANKRD11 SEMA4D HIVEP2 CDS1 LRRFIP1 ETS1 LIN7C CUL3 EPHA4 NAV2 FRYL PSTPIP1 AC108002.1 SERINC5 STIM2 CDK6 STIM1 SERTAD2 ECE1 PPP2R5C SLC38A1 ALOX5AP IRF2 CDH23 UBE2D3 ISG20 OGDH FAM222B ELMSAN1 AC008403.1 FAM76B SCML4 DEGS1 TCF7 AC068896.1 RAPGEF6 TSPAN14 GNB2 ARL4C MCFD2 RFX3 PYM1 AL928654.3 CFL1 CORO7-PAM16 ST6GAL1 FYB1 RORA SRPK2 GLS\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Effector CD4+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RUNX1 ARHGEF3 CYTIP PDE4B TNFAIP8 SCML4 CARS2 CEMIP2 UBAC2 PLCL2 FOXP1 ATG5 SPTBN1 LEF1 FAM107B ITPR1 ARID5B HDAC4 SP4 PTPRC KLF7 CUBN GTDC1 PAG1 PPP2R5C ATXN1 DUS2 NFATC2 PRKCA FYN BFSP1 MKL1 NFKB1 ARHGAP15 TNRC6B DNM2 LINC01588 TGIF1 TRABD2A MNT AC069368.1 GNG7 STT3B ARID1B AC020743.2 FLI1 RUNX2 CSK TGFBR3 KLF13 ATP2B2 MBNL1 BCL2 SNRK ACOXL CDC42SE2 HIVEP2 RIPOR2 ZFYVE28 CD69 ST6GAL1 ZDHHC14 AKAP13 CSGALNACT1 SEMA4D TRAF3IP3 EPB41 CRYBG1 SIN3A RAB27A DAAM1 CASP9 AP000311.1 MACF1 AC006369.1 INPP4A MED12L ESYT2 APBB1IP ZBTB25 ITK DLEU2 TIAM1 SMARCA2 BCL11B TAB2 GSE1 AHR CDC14A B4GALT1 CFLAR SEPT9 HIVEP3 XPO1 ZNF365 SETBP1 ETV6 MIR29B2CHG PARP16 IKZF1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Effector CD4+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: CAMK1D LFNG FOXP1 ARID5B LINC02341 AKAP13 ARHGAP15 GRK6 IRF2 PPP3CA ARMH4 STAT1 BCL2 SERTAD2 CFL1 ANXA6 CYTIP GNG2 LRRC8C-DT ARHGEF3 FCRLB AL390957.1 RNF38 GNAS ST3GAL1 ETS1 CCDC12 RNF125 ZBTB38 FYB1 ZBTB20 PRDX3 HDAC4 DENND4C C1ORF112 MYH9 IDH1 RAC2 NFIA LINC00578 ATP2B1 SPRY4-AS1 AC068896.1 PVT1 POLR1A LINC01588 RASGEF1B RASA1 ARL15 PHF12 ABTB2 ISCA1 ACSF3 GLS SLAIN2 EPB41 ITK P2RY8 TATDN1 DNM3 CD53 PLEC ANKRD11 CPOX SPECC1L AFAP1 RPTOR CCNI CNOT1 KCNIP2 C15ORF53 RUNX1 NEMP1 PDCD10 PNKD DCLRE1C AL035530.2 TPD52 AC016831.7 CD96 DOCK10 CACYBP CARS2 CMTM7 UHRF2 WDR12 HSPB11 SBNO2 AL023755.1 GLB1 CDK6 TMED10 ANKMY1 BORCS5 SNAP47 B3GALNT2 LRCH1 MAML2 UBASH3B RSU1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Effector CD4+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PATL2 EPC1 TLK1 KIAA0895 TMEM106B GRB10 RUNX1 FAM117A IGF1R ABCB1 CACUL1 LINC01629 ACSS1 TSGA10 HDAC7 LTA4H UMODL1 HYKK RSPH14 AC017083.3 ZBTB2 ANP32E SEPT9 C1ORF112 MAML2 SH2D3C EMC9 SPTBN1 HIPK2 HSP90AA1 IKZF1 XYLT1 LPIN2 ARID1A MCM9 SYNGAP1 AC068896.1 FBXL19 LCT TGFBR3 AC073934.1 TTI2 SULF2 LMNA HMBS MXD1 PITPNC1 C12ORF75 ABL2 CD44 FIGNL1 UBAC2 TPM4 WAC-AS1 TIAM2 RNF122 CHRM3 SUN1 IFNGR2 SLC3A2 PPAT PXYLP1 ALDH7A1 APC RHOH MRPL44 FOXN2 MTHFD2 CYB561D1 MGAT5 RASGEF1B ARHGAP15 MAP3K14 RAB27A HACD2 AC005224.2 AC016831.7 DPP4 NTMT1 ITGB2 PACS1 SLC12A6 SCCPDH FYN PEPD KHSRP KPNA5 RPN1 LIMA1 AL136531.2 TMEM56-RWDD3 SP1 SPON1 NEB LPP ASXL1 TNFAIP8 RAD52 ADAM11 GYS1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Effector CD4+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PRKCH RUNX1 UBAC2 SCML4 KLF13 AKNA RIPOR2 BCL11B AKAP13 LINC01126 CD96 SH3KBP1 PTK2B ITK CCDC88C FYN FGD3 SEPT9 FAM107B MBNL1 FRYL IL7R TNRC6B LINC02341 HIVEP2 RASA3 ARHGAP25 ZBTB20 CYTIP FOXP1 TNFAIP8 LINC00598 INPP4B TRAV14DV4 MGAT5 RASSF3 MNT LINC01588 RAB43 ESYT2 RORA TPRG1 RORA-AS1 TPRA1 SH3GL1 MACF1 NEMP1 PABPC1 MAP3K3 ARHGAP15 AC068896.1 CD226 BACH2 DOCK10 FKBP5 TRAJ28 ATXN7L1 PHF19 TMSB4X JMJD1C PIK3R1 AC016831.7 NHSL2 CBLB HDAC4 AL359736.1 MKL1 PCAT1 SEMA4D CDK6 CELF2 KLF12 RAD51B ACIN1 EGR2 TTC33 MDC1 NFE2L2 ELF1 KCNQ5 PAG1 ETS1 H3F3B JOSD1 IL2RA SMG6 CXORF65 CD44 ARHGEF3 ZBTB14 LCP2 MTMR12 RPTOR AC078923.1 CAMK1D CUL1 PLEKHF1 GRK6 CMTM8 ATG16L1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Effector CD4+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: HDAC4 MICAL2 ZDHHC5 MGAT2 AKNA HS3ST3B1 SPEF2 RGS3 IKZF1 OSBPL3 LINC00598 CCDC88C DLEU2 ARHGAP15 PITPNM2 ETS1 SLC1A2 NCK2 STIM1 AC069368.1 SERINC5 FAM117A ZNF736 CATSPERG ITPR1 HIVEP2 RUNX3 AL138720.1 SDR42E2 RGCC WDPCP CHFR OXNAD1 SKI SEMA4D CPOX AC008937.1 SPOCK2 EPAS1 KIF27 EPC1 MAML2 AC008764.1 LINC02073 ATG5 TUBA4B TESK1 RHOG ZCWPW1 HPS5 BPGM PRKCA MCM9 RSAD2 AMN1 NT5DC1 PRKCH NUCB2 PWWP2A GIT2 CHRM3 ATXN1 VCL AL160408.2 CDK19 UBE2D3 PRDM2 PALM2-AKAP2 PTPRC NFIA TMEM150B SH3GL1 AHR FOXP1 PATL2 NR3C2 PLRG1 MXI1 PLEKHF1 CSNK1A1 ABCD2 UBAC2 COX7A2L FNDC3A ATXN7L2 HIPK2 INTS3 PAG1 NPAT RHOF IGF1R CRTC3 PKIA-AS1 OSBPL8 ARID5B STK17A METTL8 SNRPD2 MGAT5 NFE2L2\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Effector CD4+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 TRAJ28 INPP4B CYTIP RIPOR2 AC016831.7 ITPR1 UBAC2 PATL2 ARHGAP15 LINC00598 ARID5B LINC00861 KLF9 LIPA ATG5 PTPRC MYO5A HIVEP2 CD47 GPRIN3 BCL2 TNFAIP8 IFFO2 CASP8 FAM107B DRAIC ANKRD44 AKAP13 AL390957.1 BHLHE40-AS1 MAP3K5 AHR LINC01934 PDE4B DLEU2 IFRD1 CCDC12 UBASH3B MLLT3 ARHGEF3 RPS6KA2 PCED1B SP4 FKBP5 AC096920.1 EPS15L1 ZSWIM6 RMI2 AKNA SERINC5 AC009185.1 TNRC6B CDC14A C1ORF112 AC018647.1 SAE1 HERPUD2 ETS1 ING3 STIM2 PRKCA NCOA6 CFLAR PRKCH CAMK2D TBC1D2B PCGF5 LCP1 ZMYM2 AC007384.1 LINC00426 TECR SLC22A23 ADD3 P2RY8 PTPN1 LPP SCML4 ANTXR2 CCSER2 ST6GALNAC3 ATXN7L1 STK10 RASSF3 NFATC2 RORA PNRC1 RARA AC116366.3 ZBTB7B ARID1B GATAD2A SIAH2 ELF1 CLEC16A MAML2 HDLBP COQ10B PTPRK\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Effector CD4+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: TNFAIP8 ITPR1 ZNF131 AKNA UBAC2 CELF2 RUNX3 CCND3 FOXP1 ARID5B PIK3R1 ARSG ATG5 LINC01004 OGDH TLK1 IKZF1 PHF19 RHOH TRAPPC6B KLF9 AC025682.1 CAMK1D BACH2 AL691403.1 NCOA2 ZNF414 BICDL1 RPS6KA2 TIAM1 PDE4B BNIP2 AC022182.1 TC2N ANKRD23 ABLIM1 TSTD2 ELMO1 FOXN3 AL356234.2 KCTD9 ID2-AS1 ASB2 PRKCH CDC14A RIPOR2 PCYT1A TBC1D5 ATOX1 LINC01588 ANKRD44 GSE1 EPC1 RAB11A LINC00598 WNK1 EIF3H ARRDC3 FAM117A ANXA2 ANTXR2 RASA1 PPM1B HIVEP3 REEP5 DOCK9 RNF38 ISM1 AC107214.1 DOCK10 CAMTA1 RALGDS AL390957.1 TNRC6B CTNNBL1 PRKAR2B MGAT4A MYOM2 KLHL5 APOLD1 RXRA ZNRF2 BCAR3 CEP170 NUDCD2 ARMH4 STIM2 SLC11A1 PDE8A ZFP36L1 SIAH2 MLLT3 ACTB LRRFIP1 LYSMD2 LIPE-AS1 TMEM106B LRRC8C-DT AC076966.1 COA1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Effector CD4+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ATXN1 BCL11B KLF10 SUB1 ETV6 AKIRIN2 MAML2 PDE4B ITGA6 RASGEF1B ARHGAP5 ASH2L CBLB INO80B LIPA TMSB4X STIM2 BACH2 HMGB1 ZNF771 HELQ DSEL TTL ZNF136 CDC42SE1 BCL2L1 CMC1 AL159163.1 WBP11 TMX3 UXS1 PATL2 MAPKAPK2 UBE2D3 RBMX2 CUL5 CEP350 MAP3K1 NPC1 NDUFV2 PXT1 CENPT AC024592.3 CEP290 ARHGAP31 SERTAD2 RORA-AS1 ITM2B DESI2 SSH2 CRYL1 KLHL2 ATP5F1A AC117394.2 AF241726.2 HERC1 SYNJ1 IQCG KIF1B PER1 RNPEP ANP32A ADGRV1 ZNF397 DNMT3A LINC01301 ADTRP JAK1 DOCK4 PDE7A GBP2 STAT3 CENPL TFB2M FOXO3 JAK2 TSPOAP1-AS1 BHLHE40-AS1 ZCCHC2 MBP HIVEP1 ZNF140 CAB39 ZFAND3 DOK2 CRY1 HEBP1 RASSF3 AL160408.2 CASP8 SH3KBP1 INTS10 PPP2R3C HIVEP2 AL133551.1 PTPRM GPR157 RPA2 CMSS1 IKZF3\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Effector CD4+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: AC016831.7 RUNX1 HIVEP2 CDC42SE2 TNFAIP8 UBAC2 INPP4B ATXN1 FYN GLB1 CHST11 AKAP13 FAM107B TIAM1 TNRC6B TSPAN14 ELMO1 TRABD2A PRKCH GNAQ AUTS2 IKZF1 SEPT9 SEC22C SYNE1 TTC39C RPTOR RIPOR2 BCL11B ZFP36 AL031599.1 PPP1R16B PHF19 SMG6 LINC01588 LINC00598 PRRC2B ST3GAL1 SLC4A7 ANKMY1 TRANK1 MGAT5 CDH23 GRK5 FYB1 TRERF1 UTRN H3F3A ARHGAP26 MBP SPOCK2 LDLRAD4 THUMPD3-AS1 CCDC12 NEMP1 MAP3K5 CDKN1B SUPT5H TNIK ZFP36L1 ANKRD44 CYTIP CLTC UBA3 TECR ECE1 UBASH3B MXI1 PPP1R2 AL390957.1 AL359736.1 VOPP1 AFF1 GATAD2A EPC1 P2RY8 CD226 ST6GAL1 WNK1 CPOX ARHGAP15 ARHGEF3 AL031727.2 ZNF831 SYNE3 CAMK1D KIF2A ELL LRIG1 AAMP HOOK2 SIN3A ATG16L1 LIMD1 HECTD1 ARSG AL031056.1 SEMA4D RHOH NFKB1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Effector CD4+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: CDC42SE2 PIP4K2A FOXP1 IKZF1 UBAC2 ITK SEPT9 ITGA6 FYB1 RAD51B HIVEP2 RUNX1 LIPA HDAC4 KLF12 GPR68 STAT1 IMMP2L TNFAIP8 PRKCH UTRN ATXN1 RIPOR2 PCAT1 NCK2 PTPRC SEMA4D TNIK STAG2 LEF1 ASAP1 TM9SF2 SNTB1 FGD3 PNPLA8 TNK2 CYTIP INPP4B CDH23 RPTOR CNTRL AL138752.2 ANKRD44 HECW2 RHOH PLCL1 PRKCZ PDE4B ELMO1 SERTAD2 GRK6 LCP1 ZCCHC24 AKAP13 ETV6 TBC1D5 AP3M2 P2RY8 BCL11B TRANK1 STK17B ESYT2 TSC22D1 ICA1 ZNF217 AC010894.3 CD96 RAPGEF1 PLEC RASSF3 RAB43 AC079313.2 PVT1 AGPAT3 ARHGEF3 PAG1 BCL3 FBXW7 SKA2 MAN1C1 MIR3681HG IRF2 TIAM1 CELF2 FYN CSGALNACT1 LRIG1 AC016831.7 MGA LINC00649 MLLT3 EPS15L1 PRKCB ITPKB SCML4 TNIP1 FKBP5 FAM107B RHOF NDUFV2\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Effector CD4+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RIPOR2 MIR3681HG ATXN1 KCNA2 PBX3 CDKN1B FOXP1 MEX3C STK10 DNM2 IL16 UBAC2 AC022217.3 LINC01588 CCDC90B SCML4 AC008105.3 FAM107B SFN LDLRAD4 NEAT1 SMAP2 NFE2L2 TIAM1 COQ8A MBNL1 CROCC FAM160B1 PTGIR MAST4 RAD51B SEPT9 AL121748.1 CDCA3 OPRM1 OSBPL3 ALDH7A1 IL7R HOOK2 ZNFX1 G3BP2 CAMTA1 RPS6KA5 ZNF331 RSU1 WDR74 BIRC3 FAM76B BCL11B CPOX TNFAIP8 SH3BP5 CD58 C9ORF72 AC243960.1 TRAJ28 AHNAK AKAP13 RB1 SMIM35 RBPJ PTPRJ CEMIP2 AC020743.2 CNPY3 MIDN CMIP HECW2 AC011747.2 PAQR8 RUNX2 FLI1 ATP8B2 FRY AL355315.1 RHOF EHD1 AC012560.1 LINC02100 TMEM192 COL15A1 TRAF3IP3 SARS2 TRIM5 AC092634.5 ERGIC2 TXNRD1 RPS19 MLLT3 MARK2 DNAH8 SH2D2A DDAH2 AP3D1 ARHGAP18 MCM9 CD6 FBXO48 ARSG ELF1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Effector CD4+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 UBAC2 DRAIC FYN RPS6KA2 BCL2 CCND3 CD96 CARS2 TNRC6B CELF2 ANKRD44 RPTOR PRKCA ITK SORL1 ATXN1 LINC01934 ETS1 SOD2 AC068896.1 PRKCQ CASP8 PTPRC EIPR1 OSBPL3 CDK6 ITPR1 AC016831.7 MYO19 SEPT9 MAP3K3 RASSF5 PIP4K2A MGAT5 HNRNPL CDC14A NFATC2 IQGAP2 G3BP2 LINC01588 MAP3K5 ZBTB20 NEAT1 PRKCH FYB1 RAPGEF1 MBP GRAP2 ARHGEF3 GPR68 POU2F2 RORA-AS1 AL359736.1 STK24 CPOX MAPRE2 SUPT16H TXK EHD4 OXNAD1 CFLAR YWHAZ MPP7 PTK2B EVL ITPKB SMARCA2 AP000311.1 MLXIP LRRFIP1 SRP14-AS1 LCP1 CD247 P2RY8 PRR5L ARRB1 RASA1 HIRA CDC42SE2 LINC00598 SMIM13 MKLN1 LEPROTL1 LINC00649 PSMG1 JMJD1C RERE PVT1 DOCK9 ITPR3 BCL9L AC010894.3 TNFSF10 ATF7IP PLCXD2 DAAM1 KIAA1671 ELF1 STIM1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Effector CD4+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: CYTIP DOCK10 TNFAIP8 LPIN2 KPNA3 EIF2AK3 KNL1 AL031599.1 UBAC2 RIN3 TMPO CPEB4 STK17B SLC9A1 PTPN22 UPP1 HDAC4 CDH23 STIM2 SGCA SUSD4 DDX18 SPAG8 TUBA1C FKBP5 AC007728.2 CHURC1-FNTB KMT2C RASA2 AC093010.2 FNDC3A STRN3 PNPLA8 PIP5K1B LINC00598 MAP4K1 RPTOR SWT1 TNRC6B ATP7B TGOLN2 RPL36 PDS5B MBTD1 ALDH18A1 CENPL ASIC2 CS KHDC4 LY9 PACSIN2 RAC2 SLA2 CARM1 SERBP1 FLT1 RFX3 EBPL WNT3A PABPC1L RASA3 FBXO31 LINC02068 NUDCD2 ARHGEF3 SMIM2-AS1 CNOT3 SGK1 LINC02179 NCK2 ARF6 TBCCD1 MCM3 TBC1D8 NDUFV2 DPH2 SUGP1 ZFYVE28 HIF1A-AS2 TM2D1 TMEM123 MED20 RAB30 MDFIC SLC4A2 DBH GPBP1L1 WNT3 PDHA1 RAPGEF4 MED16 HDAC7 POLD2 DLEU2 ANK1 RNF175 TERT PSMD6 MARCH1 TAB2\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Effector CD4+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: UBAC2 CYTIP BACH2 PRKCH TBC1D5 PLXNC1 ST3GAL1 MYH9 TNRC6B ARHGAP25 FYN SLC25A42 PPP2R5C DOCK9 ATXN1 NCK2 SEMA4D CD44 PVT1 LINC00598 KSR1 FOXP1 AC104123.1 UTRN ANKRD44 SYNE1 ADCY7 CELF2 LINC01934 METTL23 TGFBR2 NOL4L TLE4 TET3 IMMP2L VOPP1 LRIG1 OGDH DRAIC RAD51B C1ORF174 PRCP SEPT9 MGAT5 FOXN3 MBP SLC45A4 C15ORF53 SGMS1 NAIF1 KIAA0319L ATG5 CEMIP2 STK10 BCL2 HDAC4 P2RY8 KLF12 CHFR AL023755.1 STIM1 CDC14A BCOR ZNF831 AC093423.3 IRAK2 NOSIP PITPNM2 CCDC88C TNIK SESN1 UST ZNF609 IL7R SAMSN1 LZTFL1 AFF1 SLC25A26 ARNTL MKL1 HIPK2 ARHGAP26 ZNF367 TTC39C SH3GL1 AC096746.1 ZNF217 C1QTNF6 GNG7 VPS13A LINC01358 ERH FAM49B MICAL2 SYNE2 MAN2A1 INTS9 IL21R NCOA2 PKD1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Effector CD4+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 CCDC88C CYTIP HIVEP2 RUNX1 RABGAP1L LRIG1 LEF1 MBNL1 PRKCH TIAM1 CDC42SE2 PVT1 PRKCQ CDC14A CD247 AC016831.7 TTC33 CUBN SEMA4D UTRN IL7R CD82 UBAC2 AL356215.1 PHF19 ARMH4 IKZF1 PIP4K2A CPOX INPP4B HDAC4 ANKRD44 ARID1B SERINC5 AP000311.1 C15ORF53 ETS1 LRRC8C-DT RIPOR2 SNX9 PCED1B WNT10A ZC3H3 ARHGAP25 BCL2 MAP4K4 RANGAP1 IGF1R CDHR3 C8ORF37-AS1 ATXN2L GPR68 CARS2 ATG5 ZBTB2 SERBP1 TRAT1 RUNX2 CYP20A1 FYB1 PITPNC1 AC024592.3 PPP3CA ARHGAP15 RUBCN BCOR ATG16L1 CCDC32 TRABD2A BICDL1 RTN4 ZC3HAV1 ELMO1 ST6GAL1 FYN AKNA RBX1 SIN3A EPB41 FAM76B AL159163.1 NDUFV2 MFAP3 BCL11B MKLN1 NUDCD1 AL133523.1 SECISBP2 MCM9 ECE1 AC087239.1 BIRC3 FBXL19 PAG1 MPC2 PRKCB USP36 STK10 JOSD1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Effector CD4+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RUNX1 PRKCH AC016831.7 ANKRD44 AC099063.1 AKAP13 AL121594.1 TCF7 CMTM7 MIR3681HG AC068896.1 FYB1 MAST4 AC093010.2 VPS13D RAPGEF1 CCDC69 TSHZ2 ARHGAP26 ATP6V0A4 ITPR1 LINC00598 IGSF9B HIVEP2 POLR1A TIAM2 PTPRJ MBP SEPT9 SEC22C TMEM131L CNNM4 YWHAZ ARHGEF3 MNT KAT6B MED12L UBE2D3 NFATC2 STIM2 ITPKB NAIF1 TSPOAP1 MAML2 ARHGAP25 INPP4B OXNAD1 CDK6 ARHGAP15 TRIM8 GLB1 RNF4 G3BP2 NLRC5 DENND2A CFLAR DDX39A ARHGAP21 OTUD5 RNF125 C1ORF174 HIST2H2AC AFAP1 KHNYN PCED1B RASGEF1B ARAP1 OGDH RAD51B GSK3A FOXP1 TLDC1 RHOH FYN RMI2 LIPA BCL11B DEK FOXN2 SMAD3 ZNF318 C1ORF112 LINC01934 CUBN UBAC2 RASSF3 ELMO1 ST6GAL1 CDC73 ATP8A2 ITGA6 AC016907.2 CASP8 PXN HIST1H2AH TRAJ28 HBS1L CUL1 AC025283.3 CNOT6L\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Effector CD4+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 NEB RUNX2 BACH2 AL162311.3 SNTB1 BCL11B RASSF5 EPHA4 ELMO1 KLF7 NUMA1 EPS15L1 ANO10 RPTOR LIPA SPG11 NEAT1 HDAC4 LCOR EPB41L4A PUM1 SIN3A NDUFAF6 PPP2R3B SLCO3A1 GRK6 COPG2 C12ORF49 CDC42SE2 USP10 PLA2G12A MARK2 ZNF862 SLC37A4 RAB11FIP2 TRAK2 PSMD3 EMB RUNX1 ZNF736 GNAQ RNF38 ATG5 PDCD6 ZNF33B SMAD3 NFE2L3 DOCK10 ADK SAP18 SUGT1 FSIP1 MBP KCNMA1 PPP1R18 MORF4L2 C16ORF72 TRMT1L RAPGEF1 ELMO2 PLEKHA2 EME2 NKTR AC016831.7 HECW2 NFKB1 ESYT2 PDE4D SLC14A2 XPOT CD226 MAP4K4 PIP4P1 RPS6KA2 MDC1 RNF44 LAMA2 SCML4 PSMB1 LINC00299 ZNRF2 MAP3K7 SRF AL035530.2 DCAKD FIBP SLC17A5 CSNK1G3 PHLDB2 PYGM DEAF1 PLCL2 REV3L ACACA MIR3681HG SGK1 HSPA13 EIF3H ARID1B\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Effector CD4+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ARID5B ANKRD44 MXI1 CD247 RIN3 TSHZ2 TNFAIP8 STIM1 AC016831.7 PRKCH IKZF2 FAM117A LRRC8C-DT PAG1 RUNX1 IGSF9B RMI2 RBM15-AS1 SERTAD2 ALOX5AP WDFY2 CBFA2T2 NRL KLF13 PBX3 TRABD2A TIAM1 CAST COTL1 CDCA3 TMEM131L STK32C RNF38 BCOR RBMS1 AL355512.1 MBD6 VAV3 LETM1 LCP1 AC007163.1 AP001025.1 ELK3 TG AP005717.1 LINC00662 UTRN CDCA4 RARA ST8SIA1 STYX AC073343.2 TOX CLEC16A AC068896.1 PNPLA8 CD53 CCDC32 RHOH HDAC4 ETS1 C1ORF112 CFDP1 IDI1 TFE3 HIVEP2 UBE2D3 ARHGEF7 NCK2 ZEB2 LRIG1 CASC11 SMARCA2 MGAT2 AP3M2 SLC25A28 SGMS1 CELF2 SLC30A1 GLB1 NBN TOPORS PREX1 RORA-AS1 PARD6B TMED5 ARSG MPP7 CSK TBC1D8 ABHD2 NSD3 ABCB9 XYLT1 DPP4 AHCYL2 CMSS1 INPP5A TRIB1 MAML2\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Effector CD4+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 ARHGAP26 FYN ANKRD44 MAML2 AHR AL390957.1 FSIP1 RIPOR2 CYTIP LINC01588 CCDC88C MTSS1 CAMK4 NFATC2 RUNX1 PLXNC1 VOPP1 ATXN1 BCL2 MAN2A1 ERCC1 PATL2 PTPN2 PRKCH TTC33 PTPRJ GTPBP6 AKAP13 CDKN1B CEMIP2 NIN PRKCQ UBXN11 ZMIZ1-AS1 IKZF1 GATAD2A LINC01358 UMAD1 RPS6KA2 SMARCA2 CHST11 OASL SLC7A5 LINC00598 ETS1 NCK2 NEAT1 LINC01135 TRAJ28 JMJD1C HERC1 ATXN7 PDE4B ARHGAP25 RCL1 AC093010.2 MTO1 STAT4 BATF ZSWIM6 INPP5A MAP3K3 LPP EPC1 SGMS1 RB1 AL357060.1 CD96 FAM69A NSMCE1 BCL11B KCTD9 GTDC1 RALGDS ARHGEF7 C15ORF53 UBAC2 TRABD2A MBP SEPT9 SH2D2A LINC02029 FYB1 OPRM1 HIVEP2 ITPR1 SH3BP5 PPM1B UTRN PRKAR1B AC011498.1 HOOK2 LY9 TMTC4 MAPRE2 SERTAD2 NXPE3 TLE4 TMEM131L\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Effector CD4+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PRKCH RHOH ARID5B HDAC4 LINC01588 GRK6 TSPAN5 TSPOAP1 ATXN1 RPTOR AKAP13 FYN PREX1 GSE1 NSUN6 EPC1 SEMA4D TPT1 MIAT GRK5 ACTR1A FBRS STIM1 MED13L HIVEP2 TIAM1 ZEB1-AS1 LINC00598 DLEU2 LPIN2 FAM43A RAD51B UXS1 NSD3 TBC1D5 INPP4B UMAD1 ST3GAL1 LPP LINC01934 PCED1B AC009486.1 SPTBN1 ANTXR2 MTHFD2 MGAT5 LEF1 FAM107B FAM117A CNTRL IL7R NBN ORC4 ZBTB20 ANKMY1 AC034114.2 PPP2R5C METTL8 NEAT1 ZNF846 DRG1 RNF216 PYM1 MKL1 AC022182.1 CPOX CELF5 USP3 COX10 PTPRE DOCK10 MDM4 FNBP1 CMSS1 DGKZ PHF19 BCL11B SEPT9 MACF1 ARF1 ELF1 ST6GALNAC3 SSH2 MYH9 MGAT4A PTK2B HDDC2 DIP2A MTSS1 RIPOR2 AAK1 CITED2 TRMO FAM19A2 CYTH1 CUBN FBXL19 EMC9 SH3BP5 WDR82\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Effector CD4+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: CSGALNACT1 AC016831.7 FOXP1 BORCS5 RUNX1 TSPAN14 ITPKB TRAJ28 SEMA4D RAD51B ATXN1 MAML2 FOXN3 BICRAL TTC33 LINC01934 PTPRN2 TNFAIP8 BCL11B IL16 CDC42SE2 PLCL2 ETV6 IKZF1 GNA15 TLDC1 ATP2B2 RB1 BCL2 NCK2 ATG5 ABLIM1 CMIP AHCYL2 NDUFV2 CYTH1 NRL AKAP13 ZNF652 LRIG1 FAM117A CMTM7 HIVEP2 STIM1 HIVEP3 CELF2 CDC14A CSNK1E PRKCH CD6 SUSD6 MICAL2 LEF1 DNM2 AC006369.1 RBM23 TG MBP MXI1 AL390957.1 AHNAK KDM4C TUBA4B AC013270.1 CROCC TOX2 NCOA2 NOL4L ARL13B LINC02341 CAMK1D STT3B GM2A FIZ1 ANXA6 DOCK10 MATN1 CYTIP TGIF1 HDAC4 AIP RTN4 RPTOR LETMD1 HDAC7 DMAP1 NR4A2 ETS1 AL451062.3 ALDH6A1 CAND1 NIFK-AS1 ELF1 LINC01588 CNOT3 IL7R STK40 CBR4 AC068896.1 ZNF77\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Effector CD4+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RIPOR2 CDC42SE2 IKZF1 AL390957.1 ITK ITPKB TCF7 LINC00598 MAML2 TIAM1 TRMO HDAC4 FOXP1 AC068896.1 HIVEP2 GRK6 PPP2R5C SEPT9 ATXN1 MBP SORL1 ST3GAL1 PHF19 CDC14A ARHGAP15 FBXL19 FYN AC010894.3 FAM107B CEP85L TSPOAP1 RBPJ PPP1CA TMC6 TRABD2A PVT1 KAT6A ZFYVE28 AKAP13 RAPGEF1 TNFAIP8 FLI1 UBAC2 BACH2 AL133523.1 P2RY8 SEMA4D HOOK2 AL049869.3 PCAT1 MAML3 CD28 EPS15L1 RUNX3 TLDC1 SCML4 ARHGEF3 GRK5 SPAG7 MCF2L2 FYB1 AP000787.1 FOXO1 KLF7 GRPEL1 PTMA ZFP36L1 ANKRD44 JARID2 UMAD1 ZBTB2 CHD7 PDXDC1 AL357060.1 SOD2 ELMO1 PRKCQ LPIN1 ARMH4 DLGAP2 PRKCH LINC01588 RUNX1 BRF1 ARHGAP45 KDM3A RHOF CARS2 INPP4B CUBN KANSL1 CD226 NFIA CD82 ATXN7 LINC02341 STAT1 ZC3H4 MAP4K4 AC079313.2\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Effector CD4+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: CEP170 TSPAN14 MACF1 NR3C2 PNPLA8 SMAP2 NBN MLLT3 LMO4 AL023755.1 WAPL AMOT SNRK NLK IQGAP2 PPP3CC BMP2K TRIM5 NDUFA4 KLF13 STN1 PINX1 RBMS1 JMJD1C LINC02427 AL137145.2 AC011455.1 LMAN1 SCYL3 TENT5A DNAJC3-DT CYREN PUS7L ATXN7L1 SSBP3 ZMIZ2 ISM1 ANKRD46 RNF145 EGR4 ICK ZNF138 GACAT2 CWC22 ATP6V0A4 BCL2 DSE PIK3CD AC118549.1 EHBP1 SLC25A17 FNIP2 RALBP1 SERINC5 SNTB1 TPK1 RHBDD2 IMMP2L NDUFAF6 IRF2 CHST11 JADE2 SPECC1 L3HYPDH LDLRAD4 KCNA2 MSRA MARCH6 SCAF11 LEPROTL1 SPEF2 AC073517.1 GGCT CDON CAMTA1 SLC7A6OS MTR NFATC2 GCA DOK2 FAM83D MIR3142HG DEK PHF19 HNRNPD OTUB2 SLC30A7 CDK6 ZNF555 AL158211.3 NIFK-AS1 GOLPH3 GNG2 BCAT1 SP4 OXNAD1 DPH3 REEP5 ZC3HAV1 KRAS\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Effector CD4+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FAM107B PRKCH LINC01126 CDC14A ZFP36L1 HDAC4 ETS1 ITPKB MICAL2 CBLB AC068896.1 STK17B PLCL1 LINC01588 DNMT3A CDKN1B ARMH4 ATXN1 EIF2AK3 CHST11 MBP HIVEP2 HNRNPUL2-BSCL2 FGD3 TRAJ28 MAML2 RB1 RPTOR IKZF1 INPP4B UBAC2 FAM117A IKZF3 RHOH P2RY8 ARHGAP26 ZNF800 STK10 XYLT1 TIAM1 SLC38A1 RAD51B RIN3 BCL2 AC069368.1 AC005726.1 EMC9 AC022126.1 NOL4L PTK2B SORL1 PARP8 NFATC2 LIPA PRKCB AC025171.3 MACF1 PIP4K2A GYS1 CYTIP ARHGAP25 RPS6KA5 CRYBG1 ZNF77 SLAIN1 RASSF3 PTPRC SEMA4D KLF9 ACTB TGFBR2 PRKACB STIM2 YWHAZ CARNMT1 AC098582.1 GM2A GSE1 FOXP1 ZNF516 ARHGEF3 ICOS PRKCA UTRN ARHGAP15 RIPOR2 CAMK1D THEMIS SYS1 BACH2 AC010894.3 NEAT1 ZCCHC14 AC005224.2 PACS1 ZNF217 ZNF827 BCL9L PNPLA8 ITK\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Effector CD4+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ANKRD44 RIPOR2 LBH HIVEP2 TNRC6B NFKB1 KIF2A NFIC FOXP1 FYN LINS1 RMI2 SEL1L SEPT9 FYB1 TSPOAP1 OGDH BCL11B TSPAN5 G3BP2 UBE2D3 MBNL1 STIM1 PPP2R5C CAMK4 RUNX1 MIR29B2CHG PLCL2 ACTB GLS WDR1 CDC73 IKZF1 VOPP1 TIAM1 TTC33 MCUB ARMH4 FOXN3 LCP2 CROCC SERINC5 LDLRAD4 PVT1 RASSF3 SLC4A10 MGAT5 AC010894.3 CDC14A SERTAD2 STK17B DNM2 STK10 JMJD1C PRKCH SEC24C PKNOX1 EML6 AL451062.3 HDAC4 NCK2 MIR3681HG ST8SIA6 ZBTB25 HECA PLXNC1 ARHGAP25 GPBP1L1 ZMIZ1 GNG2 ARHGEF3 TLE2 UBALD2 AP000311.1 GYPC INO80B RAI14 PIK3CD TMEM60 SLC35A2 ETS1 TCF7 PARD3B PDE4B FAM107B TNFAIP8 WASHC3 AFF1 PATL2 CDK6 CPT1A FAM19A2 AC068896.1 PIP4K2A RAC2 SH3BP5 KPNA3 ZNF395 DOCK9 PXYLP1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Effector CD4+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ANKRD44 PRKCH UBAC2 HIVEP2 MBP FOXP1 TNFAIP8 ARID5B RAD51B CDC42SE2 ATXN1 CSGALNACT1 CIC KLF13 SH3PXD2A RPS6KA2 ZFP36L1 PPP2R5C ATG5 HDAC4 SERINC5 ITK FYN STK17B PLEC ARHGAP26 RIPOR2 SCML4 MNT SEMA4D ECE1 CELF2 NCK2 CBLB SMAP2 RASSF5 SH3BP5 TIAM1 IBA57 NFATC2 PER1 SEPT9 DNM2 MED15 TSPOAP1 MAML2 SLC38A1 TNRC6B BCL11B RUNX1 AP000311.1 CYTIP SIN3A SYNJ2 MGAT4A LBH ARID4B ITGB2 CPOX CCDC88C UPP2 CDC14A PTPRJ LCK STIM1 LINC00598 AC068896.1 FBXL19 ACVR1 AHR VMP1 ARPC5L FAM117A ST6GAL1 SLC25A26 SUSD4 SORL1 DOCK10 AC069368.1 DRAIC ITPKB OXNAD1 GASAL1 AC004596.1 HBS1L FBXW7 ZFP36 TTC33 GPR68 TNIK GON4L NFE2L1 AL390957.1 MX2 ETS1 MIR29B2CHG TSPAN14 CCDC9 FAM160A2 ZNF652\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Effector CD4+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: P2RY8 HIVEP2 HDAC4 RUNX1 DLEU2 AC016831.7 IKZF1 FAM107B OGDH CCDC12 JARID2 CD247 ARHGAP26 FAM129A PITPNC1 BCL11B ATXN1 SEPT9 MAML2 FYB1 NCOA7 STAT3 CHST11 RAD51B CELF2 MGAT5 LBH PREX1 LINC01358 UST HECW2 LAMA3 WWOX AHR LINC01135 LRRFIP1 UTRN EYA3 AC068896.1 MBP RIPOR2 ARMH4 ARID1B ELMO1 STK24 FYCO1 CIC CCDC88C FNBP1 BCL2 IL7R NEMP1 KLF9 SDR42E2 FAM49B ARID5B KIF2A ANKRD44 UXS1 CPOX IQGAP2 ARHGAP10 KSR1 ZFYVE28 STX3 PATL2 UMAD1 ERN1 FDFT1 PTPRJ FOXP3 TNFAIP8 RPTOR HIVEP3 AP000311.1 GATAD2A AMN1 KLF13 AL512604.2 PTCH1 PALD1 PRKCQ GPR68 MACF1 FIZ1 LINC01588 SLC17A5 PDE4B AC069368.1 CCND3 JAML RMI2 MNT SCML4 GTF2I GDPD5 TMCC1 PRKCH BTBD11 MBD1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Effector CD4+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 GLS KAT6B ETS1 MAML2 IKZF1 VMP1 TNFAIP8 AC104472.3 TIAM1 KLHL21 LINC00598 MACF1 ACOXL ANKRD44 LNPEP TSHZ2 TGFBR2 C8ORF37-AS1 AFAP1 HOOK1 EFCAB2 TSPAN14 PSMA1 IFT57 ALDH16A1 FBXL18 PIK3R1 GTPBP6 FHIT PSMC6 RHOF AP001107.3 GIMAP8 SRBD1 ZNF846 AHDC1 CDC14A GNG2 TRIM24 C9ORF3 MRPS31 STAT1 FOXN2 SH2B3 IMMP2L IKZF3 DLGAP2 UTRN LINC01588 CSGALNACT1 PTBP1 MIR3681HG MTMR6 SLC44A2 SKI NECAP1 SUPT7L RBM14 CHST11 PSD4 LDLR PYM1 JAM3 RIF1 SLC8A2 XPNPEP1 PIK3R5 AAMP PDS5B TMEM198 JAK1 SRPRB NECTIN1 AL136961.1 AC079385.1 NRAS SYNJ2 MPP1 ATP13A1 BCAR3 MBP ST3GAL5 PRDM10 DNAH2 UBA3 THUMPD3-AS1 AL031056.1 AC004554.2 DENND4A NOSIP KRI1 NSUN5 ZNF627 KBTBD2 AKAP7 MALAT1 CEP89 MED22 AKNA\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Effector CD4+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FYN PTPRC PDCD6IP GRB10 ZFPM1 PSPH LINC00598 ZNF846 PIK3R1 BICD1 SYNJ2 MGST3 HIST3H2BB DNAJC8 TMTC4 LTA4H LRP3 AP3M2 PSD4 FAM86C1 CAMK2D MAP3K3 AC073610.3 TERC WNT5B AKAP13 ITPKB BCL2 MAP3K1 AGO2 RFX1 AC016907.2 ZWINT CEP68 FCMR TUBA1C TNFRSF1A SLC13A3 LEF1 MTAP TOGARAM2 KLF12 ETS1 CACNA1G NCOA7 DBP STAG1 MTMR4 ZNF467 HOOK2 KLF13 HTT CDCA3 FOXO3 NUAK2 NOL4L STPG1 INPP4B TSPAN14 BAIAP3 RUNX3 AC073283.3 ENC1 KIF2A TMEM189-UBE2V1 FAM214A AC007100.1 TLE3 INO80B CA6 SORL1 RPL23A FOXP1 SLC25A28 C1GALT1 TRAK2 WNT10A ATP6V1H RPS6KA2 DUSP16 HADH HACE1 PITPNC1 TMEM45A ARHGAP25 KLF16 MAOA USP42 RFX3 C19ORF67 NDUFV2 RHEB CCDC58 TESK2 MAL CERS2 ETV6 AC104695.3 AC091959.3 FAM91A1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Effector CD4+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: AC016831.7 STAT1 BCL2 AC116366.3 AC010894.3 UBAC2 MATN1 UMAD1 PALM2-AKAP2 RBMS1 AL121748.1 HIVEP2 MGAT4A ANKRD44 TSPOAP1 ANK3 ARHGAP25 STN1 NPAT INPP4B FOXP1 STX10 FAM107B LINC00861 CCDC9 PTPRC IKZF1 RPN1 FAM117A PRKCH RUNX1 AC099063.1 STIM2 GPBP1 STIM1 TRIO HDLBP SIK3 ATXN1 TIAM1 ISM1 AC096920.1 SESN1 ISG20 RAB27A BCL9 PREX1 RHOH SGMS1 MAML2 FNBP1 INPP4A THRAP3 RASA2 YWHAQ ST3GAL1 CCR7 SNTB1 KLF13 NEAT1 VMP1 SERINC5 LINC00598 PIK3C3 CAMKK1 SSBP3 PRCP AL359736.1 JARID2 RAP1A MSI2 RUNX2 HECW2 TMEM189-UBE2V1 DPP4 CASP8 ERN1 SERTAD2 AC048341.1 CHST11 EPS15L1 AKAP13 SFMBT1 AP000311.1 AL160408.2 BACH2 TRMT1L F11R SPTB HNRNPA2B1 PAG1 CAMK1D ACTR1A GNAQ EFCC1 GNG2 ATAD2B MVB12B ANKUB1 RIPOR2\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Effector CD4+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RIPOR2 IKZF1 AC016831.7 FYB1 CSGALNACT1 ST3GAL1 AKAP13 PIK3R1 UXS1 BTBD9 BICRAL PITPNC1 STK19 ITK STK10 CAMK4 ANKRD44 SORL1 PRKCQ TRIM8 CYTIP NEDD4L BCL2L2-PABPN1 ARID5B ABHD15-AS1 AL355512.1 HIVEP3 CDC42SE2 EPS15L1 PDE4B NFATC2 CCDC88C NCK2 AGO2 AL390957.1 INPP5A PGAP1 PPP2R5C ACOXL YWHAQ RUNX1 FOXP1 CEP170 FLNA CDC14A GTDC1 STK4 NCAPH TSPOAP1 HIVEP2 CELF2 CHST11 RPTOR ARHGAP26 TOMM40L TNK2 LEPROTL1 PPM1B HMGN1 CEP85L PIP4K2A GRK5 SPTBN1 DNAJB14 RALGPS1 SNAP47 LINC00598 PSTPIP1 STK39 MICAL2 FYN GNL1 CRTC3 C3ORF58 ZBTB16 ETS1 EEA1 RIN3 ITPR1 DRAIC HDAC4 ATXN7 RBL1 RARRES1 TNFAIP8 CROCC PATL2 CCND3 FKBP5 KLF7 ELOVL5 P2RY8 LIN54 DOCK10 RAD51B C1ORF112 DLEU2 ZNF354B PLAG1 MBP\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Effector CD8+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FYN AKAP13 RUNX1 BCL11B RPS6KA2 UBAC2 RAD51B ANKRD44 TTC39C ZDHHC14 ZRANB3 XYLT1 SLCO3A1 TLE4 ARHGAP25 TSPOAP1 CASP8 LINC01588 NFATC2 ATG5 AC068896.1 SCML4 RB1 NLRC5 ETS1 ITPR1 GNAI2 PLCL2 C15ORF53 CHST11 RARA ISCA1 AL512625.2 ZEB2 MBP RNF139-AS1 PPCDC LINC00649 LDLRAD4 GSK3B FLI1 MGAT2 AAK1 AC022075.1 AC104596.1 SAMD3 ACOXL CELF2 RBPJ MAP4K4 DOCK10 NFE2L2 UHRF2 CCDC88C MBNL1 FOXP1 PTPRJ RORA CSGALNACT1 LINC01934 ID2-AS1 PCED1B AL359736.1 XPO1 KAT6B RAPGEF1 TGFB1 TRABD2A IRAK2 LINC01126 BCL2 CEP85 PUM2 LPCAT4 ARRDC3 MGAT5 RAP1B ITGAE ZNRF1 ACYP2 NDUFV2 TLDC1 PI4KA ATG3 MAD1L1 CAMK2G LASP1 CYTIP NKIRAS1 ATXN1 RNF4 CPEB4 FAM117A ADARB1 IKZF1 TESK2 AC078883.1 ARNTL STK40 GNG2\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Effector CD8+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: UBAC2 ARHGAP26 PRKCH RUNX1 PIP4K2A AUTS2 MBNL1 AKNA ARHGAP25 TGFBR2 PREX1 PPP2R5C MAPK1 CDC42SE2 ATXN7L1 MYH9 FOXP1 AC016831.7 ANKRD44 ARHGAP10 HIVEP3 GFOD1 TBC1D2B LINC01588 CAMK2D DRAIC GNG2 LPP CEMIP2 ICA1 AMN1 RIPOR2 FAM49B CD96 PRKAR1B ATXN1 KIAA1551 DNMT3A SFMBT2 TIAM2 CELF2 AC093010.2 CDC14A NFATC2 CASP8 ZDHHC14 LEPROTL1 LINC01126 AL035530.2 TRERF1 COA1 DOCK10 EPC1 PTK2B PLEC RAP1A BICRAL FOXN3 SLC15A4 IGF2R ITGAE AC068896.1 INO80B AAK1 RASSF5 PATL2 CEP85 FYN TCF7 TOX BCL6 RERE KAT2B P2RY8 FYCO1 CYTIP NEAT1 RFFL SEC22C MAP3K5 PRCP TTC33 F2R AL136962.1 TTC39B ARID4B SPTBN1 MGAT4A VAV3 ARHGEF1 MAML2 APBA2 EPC2 LRCH1 LINC00649 LIPA STAT4 TPRG1 RUNX3 ARRDC3\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Effector CD8+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RUNX1 AC068896.1 SEPT9 LINC01588 NFATC2 HIVEP3 KLF13 TSPOAP1 MBNL1 ATXN1 TNFAIP8 UBAC2 PRKCH ARHGAP26 RIPOR2 FYCO1 MBP FYN ZBTB20 PRKCQ CELF2 ETS1 TGFBR3 SMAD7 AKAP13 ARMH4 FOXP1 FYB1 STK10 NLRC5 MICAL2 AL359736.1 TCF7 TGFBR2 LDLRAD4 ERCC1 FAM49B PPP2R5C PCIF1 ARHGAP25 DNMT3A DLEU2 GATAD2A DRAIC IQSEC1 CCDC88C SETD2 AC079313.2 AC027682.4 COA1 ABHD15-AS1 LHPP BCL11B SASH3 CADM1 LINC00598 TMEM189-UBE2V1 SNTB1 PIP4K2A AC016831.7 LRIG1 SEMA4D FAM102B PTK2B MIDN SMG6 BCL2 ZBTB32 P2RY8 KLF10 GASAL1 BICRAL JADE2 RUNX3 ARHGEF3 MCTP2 ZCCHC8 PSTPIP1 NOSIP RAP2A RIN3 AC096920.1 PVT1 POLR1A UXS1 JARID2 LIPE-AS1 AC013270.1 NR4A2 SEC23B PFKFB3 LPP ARID5B ZEB2 MED15 CDH23 RBSN PLCG2 ITPR1 B4GALT1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Effector CD8+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RUNX1 UBAC2 PRKCH FAM107B GRAP2 CDC42SE2 BCL11B ATXN1 AC016831.7 HDAC4 ITK CYTIP TTC33 CDC14A AKAP13 AHR TNRC6B AL359736.1 IKZF1 NFE2L2 ETS1 AL390957.1 AC096920.1 P2RY8 PPP2R5C STK17B MED12L GNG2 CD53 LIPA PDE4B ASAP1 RAP1A IL2RA PLCL1 RHOH OXNAD1 MBP MDFIC PATL2 ANKRD44 TIAM1 CYTH1 ITPR1 ST3GAL1 TNFAIP8 KAT2B PRKAG2 RIPOR2 CFLAR MGAT5 PCED1B RASSF3 LEF1 PIP4K2A ARID5B GNAI2 AC024909.2 IL10RA MGST3 RARA CHST11 PTPRC NFATC2 LINC01004 WWOX RHOF SMAP2 SKI CASP8 PLEC STK4 TG AC093010.2 C15ORF53 VMP1 CELF2 GPR68 BHLHE40-AS1 MAP4K4 LINC01588 RAB43 STK39 RB1 CCND3 FOXP1 INPP5A DNM3 PDE4D GLB1 TNFSF10 DSE LPIN2 THUMPD3-AS1 RPS6KA5 TSC22D1 FYN CSGALNACT1 FYB1 AC079171.1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Effector CD8+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ATXN1 PRKCH ARMH4 HIVEP2 ZSWIM6 PIP4K2A TNFAIP8 IKZF3 UBAC2 LINC01588 CBLB PHACTR2 CSGALNACT1 MSL2 ANKRD11 AC068896.1 SYNE1 PITPNC1 FSIP1 IKZF1 GRK5 FOXP1 NEK7 THEMIS CCDC88C ETS1 PTBP3 PRKCQ TG RBPJ MXI1 CXCR4 PIK3R1 ITGAE RAP1A RGS3 BCL11B PTK2B EIF4E3 ITPKB NEAT1 SETD2 BCL2 RASSF5 SMAD3 NFATC2 MPP7 ST8SIA1 STK10 MBP CARS2 TC2N WDR1 RABGAP1L MAML2 UPP1 DOCK8 PTPRC GNG2 LINC00598 NCK2 MYH9 ARHGAP15 WWOX AC093010.2 RORA VMP1 LINC01934 LBH AKAP13 PRR5L INPP4B AC007513.1 RORA-AS1 MORC3 CD2 ARID5B CDC42EP3 ELMO1 CCDC9 GFOD1 CDC42SE2 SGK1 CRADD FAM117A MIAT INSIG1 EVL GTDC1 RUNX1 CD82 EHD1 DRAIC CD247 EHD4 PATL2 RHOH ARHGAP26 BARD1 ARSG\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Effector CD8+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PRKCH CYTIP TSPOAP1 BACH2 KLF13 FOXP1 TGFBR2 UMAD1 ETS1 ATG5 FYN ANKRD44 ARHGAP15 PIP4K2A PRKCQ PPP2R5C MBP FAM49B CHST11 MGAT4A ARNTL ANKRD11 LINC02341 ITPR1 HIVEP2 STK10 TNFAIP8 VMP1 RUNX1 CELF2 IKZF1 KCNA2 PCGF5 VAV3 TBC1D1 ATXN1 MBOAT7 KLF6 AC069368.1 LINC01135 TGFBR3 PDE4B ST3GAL1 TMEM131L INPP4A SNTB1 RBPJ PYROXD1 AKNA CBLB UBAC2 RAD51B APBB1IP AC078923.1 PITPNC1 NBN ITGA6 CD2 PREX1 MAP3K5 IL2RA PLXNC1 AC016831.7 STAT1 RB1 AKAP13 RPS6KA2 TSPAN5 HCFC1 SEC31A ITPKB MAP3K14 NCK2 HPCAL1 ADAMTSL4 CCDC69 OSBPL3 BCL11B MCFD2 CDC42SE2 LRRC8C-DT FYB1 SELPLG FAM117A LPP PVT1 TRABD2A AL359710.1 HAUS8 ARID5B FYCO1 ICA1 PPM1B ZNF831 ABHD15-AS1 HDAC4 AF117829.1 IMMT GNG7 TMEM18\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Effector CD8+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: NEAT1 PIK3R1 PRKCH FYN CYTIP PITPNC1 TGFBR2 TTC39C RUNX3 ZBTB2 AC016831.7 LINC01588 RAB1A BCL11B ICA1 RAPGEF6 IL7R BCL2 CAMK2D ACAA1 OSBPL3 FYCO1 MAN1A1 BACH2 RUNX2 AC008014.1 STAT4 AUTS2 RAB8B TSPOAP1 CAST EPHA4 DOCK10 MAGI3 FOXP1 WDFY2 ANKRD16 FOXN3 ASXL1 ANKRD44 ZCCHC2 ETS1 ARHGAP26 LRMP IKZF2 PDP1 HNRNPUL1 KLF9 LINC00578 PLXND1 XYLT1 PCNP IKZF1 GATAD2B ADHFE1 NCK2 TMC1 MAML2 SCML4 AC022126.1 SUPT3H PCAT1 BMT2 SUN2 CLTA TNFAIP8 AC068896.1 CDK6 ZNRF1 LIX1L-AS1 SRPRA MMP25 EGR1 VIM-AS1 SLC47A1 ATP8A1 SLAMF7 ZNF217 PTPN4 TMEM116 FKBP5 S1PR1 ATF3 RBM33 LINC01258 RAB27A CFLAR CLCN3 SH3KBP1 KCTD16 CD247 ATP6V1E2 ARMH4 AC051619.4 GNAI2 ZMYM2 NFE2L2 PKM PLCD1 NEMP1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Effector CD8+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: UBAC2 FOXP1 PRKCH BCL2 SEPT9 KLF13 CHST11 JARID2 ANKRD44 ATXN1 MBP SEMA4D RPS6KA2 PIP4K2A RUNX3 IL7R ETS1 BICDL1 CELF2 CDC42SE2 XYLT1 RUNX1 NAV2 TRAJ28 ZFP36L1 PTPN4 RAPGEF1 LINC01588 STIM1 CMTM7 MBNL1 SAMD3 CDC14A EPS15L1 PLEC IL21R AP000295.1 FGD3 ARHGAP26 ELOVL5 LDHB AC093010.2 LINC01126 EPHA4 ARHGDIB HDAC4 IKZF1 SORL1 AC025171.3 ARID5B VPS13D IGF1R SGK1 CCND3 MORC3 ARHGAP15 NCK2 FBXW7 DOCK9 BACH2 TRAF1 LRIG1 ALDH6A1 LEF1 ANKMY1 PCNX1 IKZF3 SNTB1 TNFAIP8 TCF7 HLA-DMA USP36 AC034114.2 JMJD1C ARHGEF3 PLCL2 MAP3K3 ZNF831 AL136962.1 GFOD1 C15ORF53 SPTBN1 PPM1B PAG1 MYH9 DEAF1 HEXIM1 CYP46A1 AL163932.1 FYN CAMK2D TBL1XR1 CXCR4 RARA ST6GAL1 TCAIM AL359736.1 TMEM131L AHR GLB1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Effector CD8+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ZFP36L1 RNF111 PPP3CA ZNRF2 SEPT9 HSPD1 LINC01980 ZCCHC2 ACIN1 DOCK10 FAM110A LINC01825 DGLUCY SLC17A7 FYCO1 WDR1 IFT20 ALDH6A1 WDR19 PRMT3 RIC1 ANTXR2 CDH23 NONO NFATC2 OXSR1 SPEF2 ERC1 STT3B INPP4B CDC42SE2 CSGALNACT1 DEPDC1B BBX KPNA2 TLK1 CRLF1 OTUD4 CENPT AC079171.1 CELF2 IKZF3 ATP5MF FAM184A LMAN2L HLCS SEMA4D ARHGEF9 MAST3 SLC30A5 COLGALT1 DVL2 AP002852.1 STX10 ZNF367 AC008897.2 MICAL3 PLEKHG1 USP45 FAM78A CX3CR1 POLR1A SRP9 PTPN1 CCDC25 GRK6 LARP1B CDC26 PORCN HNRNPM SRGN NAA50 CPEB2-DT SYS1 ERBB3 ARHGEF1 AMMECR1 LUZP1 MAP2K3 ACSL1 TMA16 TGFBR1 EVI5L PCAT1 PHF10 HMGN5 EIF2A WBP2 ZNF549 C9ORF3 KRI1 AMIGO3 OTUD6B-AS1 ZCCHC24 LRRC8C RNF122 PAK2 TNIP3 SAR1B STK24\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Effector CD8+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: AC068896.1 PRKCH KLF13 AC016831.7 TSPOAP1 ARHGAP26 ATXN1 ITGAE AL359736.1 HIVEP2 RAC2 NFATC2 RIN3 HDAC4 ARHGAP25 FYN TNRC6B CELF2 TRAJ28 SEC22C HSPA1B SYNE1 SEPT9 P2RY8 UBAC2 TLE4 MBNL1 DOCK10 MAPKAPK2 ERCC1 PCNX1 FOXP1 LINC01934 CCDC88C MCF2L2 SMAD7 CDC42SE2 HMGB1 ITK PCF11 RALGDS PITPNC1 ANKMY1 ANKRD44 MAD1L1 LINC00598 DNM3 BICRAL GTDC1 AL357060.1 AC117394.2 CCND3 KLF9 GPR68 ELMSAN1 CHST11 TNFAIP8 BCL2 TOB2 CD96 CBLB MIR3681HG POU2F1 FAM49B ASTL TBX21 COTL1 AC010894.3 MAML2 ASAP1 CDH23 PPP1R16B ZFP36L1 ANKRD11 TIPARP HHAT MBP UST UTRN TRPS1 INPP4B BCL9L APBB1IP SLC4A4 FOXO3 RUNX1 ATG5 GRK6 EPB41L5 HIVEP3 DLGAP1 ETS1 AL390957.1 EVL PIP4K2A SESN1 CCSER2 GATAD2A OSBPL3 RPS6KA5\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Effector CD8+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RORA-AS1 BACH2 FAM107B ARHGAP26 HDAC4 ARHGEF3 RIPOR2 TBC1D5 SEPT9 PATL2 MBP UBAC2 SEMA4D DOCK9 PRKCH AUTS2 RPS6KA2 LINC01588 RAD51B FYB1 PIP4K2A STAT4 NDUFV2 CAMK2D AC068896.1 LRCH1 LPP TNFAIP8 EVL NFE2L2 CFLAR RORA ANKRD11 GALNT6 PLAC8 ATG5 ANKH ARID1B EFNA5 BCAS3 CSGALNACT1 NCK2 DOCK10 ENSA ELF1 GALT PPP1CA FRYL MALT1 AK2 AC006369.1 KCNQ5 CD96 EPC1 STAG2 CD2 PAN3 RNF44 TGFBR3 JAK1 CDC73 EZR CD226 IKZF1 SMAD3 PTPRJ DOCK8 ITGA6 TGFBR2 RB1 SYNJ2 RBMS1 KLF13 CYTIP AC078923.1 SH2D3C AJM1 CCDC6 KLF7 PDIA4 ZBTB20 CASP9 KIAA2026 AMN1 CGN HMGB1 EXOC1 IFI16 ITPKB LINC01825 METTL23 AC010894.3 NDUFA12 TIAM1 UMAD1 CBLB BCL11B POC1B BICDL1 BCL2\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Effector CD8+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ARHGAP26 RIPOR2 CDC42SE2 CAMK2D IGF2R UBAC2 MAML2 BCL9L KLF12 ZFYVE28 SEPT9 TNIP1 UTRN HDAC4 PTPRC RPTOR WWOX KLF13 VMP1 PSTPIP1 MFAP3 RUNX1 ECE1 FAM117A RASSF3 RB1 AKAP13 FAM107B MAN2A1 VGLL4 RALGDS MLLT3 CD96 MARK4 FYN ITPR1 PIP4K2A STAT4 BCL2 AC016831.7 SORL1 RORA-AS1 JMJD1C GRK5 RHOF AL162377.3 CCDC88C STIM1 AC010894.3 ITPKB ELF1 PRKCH TNFAIP8 FYB1 DLGAP1 IKZF3 BACH2 MYH9 HIVEP2 PRKCA AC068896.1 PRKCB GTPBP6 RUNX2 SNTB1 CEMIP2 AKNA CSK PLEKHA5 ENO1 PITPNC1 MAST4 SYTL2 C15ORF53 ENKUR PTEN P2RY8 ARL4C POLR1A LPP EVL EPHA4 GSK3B PIK3C2B ELMO1 GOLGA2 TRERF1 AP000311.1 AGO2 ALOX12-AS1 AC008124.1 CLCN3 AUTS2 ZNF18 TSPOAP1 LEF1 CYTIP IRAK2 GPR68 EXTL3\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Effector CD8+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ATXN1 AC068896.1 HIVEP2 RHOH FYN LINC00598 PIP4K2A ETS1 ZSWIM5 ZCWPW1 KLF10 MICAL2 ATG5 STAT4 PTPRC SYNE1 NEDD9 CCDC173 ARID1B CD96 AKAP13 E2F3 TRAJ28 CDH23 IKZF1 RUNX1 MAP3K3 AL138720.1 ANKRD44 UBAC2 MRPS27 CDC42SE2 MDC1 NLRC5 SETBP1 HDAC4 CELF2 TRERF1 ARHGAP25 UTRN CFAP20 USP25 PLCG2 ELMO1 MAML2 MAP4K4 SLC25A26 AL359736.1 RGCC IQSEC1 HIVEP3 NUB1 LYST APTR SEC22C ITGAE NCOA2 ST3GAL1 GMNN WNT10A RNF38 BCLAF1 PRRC2B MAN1C1 APBB1IP SMIM13 RABGAP1L AC022826.2 NOSIP KLHL21 AC008667.1 PCED1B MAN1A1 FYB1 NOL6 ZEB2 FAM49B SLC17A7 CPEB2-DT ASB2 CHST11 STAG2 IL17RC FBXO33 TNFAIP8 CHEK2 NDUFAF6 RAB8B CYTIP SOD2 AUTS2 CXCR4 LBH ADAMTSL4 CMIP VPS13D CCDC9 SMURF2 AL035530.2 ITPKB\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Effector CD8+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ETS1 PRKCH RUNX1 RUNX3 FOXP1 P2RY8 FYCO1 FYN FYB1 AKAP13 SLC25A26 LPIN2 TMEM143 LDLRAD4 HIVEP3 TRABD2A CD96 CEP85L ATXN1 IKZF3 ARHGAP26 CELF2 TGFBR2 MDM4 PDE4D UBE2D3 PPM1B JARID2 TSPOAP1 ST8SIA4 CD58 STK10 MAN2A1 BICRAL ST3GAL1 PTPRC ADRB2 CGRRF1 UBAC2 JAK1 TMEM163 MCTP2 ARID1B GRK5 PREX1 SLC39A10 HOOK2 SPTBN1 UST PTPN2 NCOA7 AL450998.2 KIF3B KIAA1671 VAV3 PRKAG2 PRKCQ SMG9 ELMO1 AL138930.1 ENC1 LINC01126 HIVEP2 AC008875.1 ARAP2 CEMIP2 FAM185A AL139807.1 LINC01588 PDCD10 SSH2 DIAPH1 CD99 RCL1 POLR1A CD44 ERN1 AC009185.1 DUSP10 ZNF407 ZBTB20 NFATC2 AHR RPL13A TNFAIP3 AC079171.1 POLI ADM PIGV NRG2 C15ORF53 MBP BCL11B ELF4 AC009299.3 RASSF5 CXCR3 ATP6V1E2 SMAP2 RERE\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Effector CD8+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: NEAT1 RUNX3 RIPOR2 AC068896.1 MYH9 FOXP1 ARHGAP26 UTRN PPP2R5A UMAD1 USP12 TG ATG5 PPP3CA CD8A PRKCH AL162377.3 PCF11 LCP1 RB1 BCL2 SEPT9 TPRG1 CMTM7 ST3GAL1 HECTD2 WNK1 MGAT1 ARID5B TBX21 CLDND1 FLI1 CTIF AUTS2 RHOF ETS1 AC135178.2 SH3KBP1 LINC01588 ARNTL AKAP13 SCML4 AC008750.8 RBPJ ZDHHC6 CASP8 PDE4D CDCA3 TOB2 RNF125 ANKRD11 BCL11B HIST1H4B KAT2B AKNA FSIP1 CBLB DOCK10 ARHGEF3 SETBP1 RORA-AS1 ARPC5L LINC01655 AHNAK GPBP1 ZNF407 AGFG2 FAM117A IL6ST C19ORF67 RHBDD3 PEX6 MYBL1 MAML2 CPOX ST6GAL1 DPH3 PLEKHA1 RNPS1 CCDC102A SNX9 AL445490.1 TRAJ28 NDUFV2 MAST4 SLC25A42 NSMCE4A POMT2 STAG2 TRAF1 AKAP7 ZFP36L1 CCDC82 INPP4A MSI2 DNM2 UBQLN1 SLC27A1 SNRPC RALGAPA2\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Effector CD8+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ATXN1 IKZF3 DRAIC FOXP1 KLF13 CCDC88C PNKP RFX3 CDC42SE2 TGFBR3 FYN JARID2 NCOA2 CFLAR TIGIT GRK5 CLEC2D RIN3 IQSEC1 TRERF1 RUNX1 ARHGAP15 CCDC12 PRKCB UBAC2 CMTM7 DNM2 AC006369.1 RAPGEF1 LAPTM5 HIVEP3 ZBTB7B ARHGAP26 MACF1 TPRG1 ST8SIA4 NCOR2 PTPRC PIK3R5 CDK6 CELF2 ATXN7L1 HDAC4 PAPSS1 LCP2 AKNA PIK3R1 PRKCE GATAD2A SUPT3H AL138930.1 PHACTR2 ATXN7 IKZF1 ETS1 B4GALNT3 PVT1 HIST1H1E CSGALNACT1 DTHD1 OGDH FAM107B ITK TMEM161B AL139807.1 NAA50 TG HLA-DMA RIPOR2 IL15RA ZNF846 AL390957.1 DHX9 PITPNC1 ARL4C EFNA5 RTP5 MAN1A1 INPP4B STX16 STK39 ABLIM1 ZYX TTC33 PLEC TRPS1 NBN MNT TRAJ28 MLLT3 PRKCH RHEB AC098613.1 AC027644.4 ZNF217 MRPL33 APOA1-AS SGMS1 PTPN6 ZFP36\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Effector CD8+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RUNX1 CDC42SE2 MBP PIP4K2A AC016831.7 FOXP1 FAM117A UBAC2 ARHGAP26 TBC1D5 ETS1 SEPT9 CELF2 ATXN1 PIK3R5 HIVEP2 SPIDR BCL2 MGAT5 CBLB PITPNC1 CCDC88C KLF9 POLR1A NFATC2 VAV3 LIPA ITGAE TNFAIP8 TRERF1 FYCO1 CPOX ABLIM1 GATAD2A NCK2 TGFB1 PTK2B OPRM1 JMJD1C MTDH TTC33 BCL11B AC068896.1 SLC38A1 ICA1 TRAJ28 SPTBN1 ERCC1 MAML2 SMG6 EVL XKR6 LINC01934 PIK3R1 MYH9 CCDC12 PRKCH LINC01004 ARHGAP25 IKZF1 PRKCQ PRKAG2 EMC9 SARAF TSC22D1 FAM228B CAND1 PRKCZ TMEM39A TBC1D2B TSPAN14 ZNRF2 BACH2 WDFY1 ATXN7L1 USP34 SPEF2 DOCK9 TOGARAM2 CRYBG1 KIF22 MIDN PDE4B ST8SIA4 CDYL2 FAM102B LSM4 BCL9 AL356215.1 TPRA1 PPP1R16B AC008764.1 ARL2BP TC2N RIN3 PLEKHA2 NR3C1 CDYL AP003472.1 DRAIC\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Effector CD8+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: UBAC2 ANKRD44 BCL11B LINC00598 NLRC5 PRKCH TGFBR2 FOXP1 ST3GAL1 CDC42SE2 LINC01126 RUNX1 ARHGAP26 HBP1 DUSP10 LIPA BCL2 RIPOR2 AOAH RORA-AS1 FYCO1 DRAIC IL7R PLEKHA2 CDKN1B ETS1 RAPGEF1 AL136368.1 AKT3 LINC02341 SH2B3 PTPRC USP34 ARAP2 MGAT5 HNRNPA2B1 FAM129A EMC9 LINC01588 ZBTB20 PDE4B EFNA5 ZEB2 PITPNC1 TSPAN14 FAM107B GNG2 AL138752.2 EPC1 AKNA AC010894.3 CIC TNFAIP8 ZC3HAV1 HIVEP3 GRK6 RASSF3 UTRN MBNL1 TBC1D5 LINC00861 CAMK2D EGR2 NFIA MAML2 RAB11FIP4 PTCH1 STK10 VOPP1 SIN3A TBC1D14 MTO1 CEP85L VIM-AS1 TGFBR3 AL031599.1 LEPROTL1 ARHGDIB CFL1 LRRC8C-DT DLGAP1 PPP1CA ARRDC3 CDK6 KLF13 FYN AC016907.2 FAM102B PPP1R16B ZNF254 CHST12 SPON2 PPP6R3 RAD51B UPP1 P2RY8 SEPT9 CFLAR FAM117A NR3C1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Effector CD8+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RUNX1 IKZF1 TNFAIP8 ARHGAP26 UBAC2 ZBTB16 PIP4K2A ANKRD44 MED12L HOOK2 ITPR1 LINC01934 PRKCH ST3GAL1 HNRNPUL1 STAT4 PITPNC1 LINC01588 AC020911.2 RAD51B HIVEP3 FYN TGFBR2 GALM ARHGEF3 CDC42SE2 HECW2 AAK1 CIC AC107214.1 SMG6 MAML2 ITGA4 TTC39C FAM117A ARID1A CBLB DUS2 SIN3A NOL4L FAM107B FYCO1 UMAD1 IMMP2L AL359736.1 OARD1 PRKCQ UBE2D3 GATAD2B IFFO2 ZNF831 HDAC4 RAPGEF1 MAN1C1 CD2 FLNA VPS36 TSPOAP1 JAML CASC11 IL7R ATP2B4 AC068896.1 FAM76B ITPKB APBB1IP NEMP1 CELF2 ETS1 HIVEP2 CCDC6 CD28 ABHD15-AS1 MYH9 MICAL2 DAD1 RPS6KA5 TANC1 ATF7IP ATXN1 DNAJC8 RAI1 SNTB1 RAB43 GAB3 PLCL2 IKZF2 JARID2 ARHGDIB RIN3 ADM ASAP1 TMEM87B RALGDS IFNG-AS1 PLEC RUNX3 DLEU2 RHOBTB3 BACH2\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Effector CD8+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PRKCH IKZF1 AC016831.7 MGAT5 RBMS1 ATG5 HIVEP2 MBNL1 TMEM131L FYB1 FOXP1 HDAC4 BCL2 BACH2 AC010894.3 PATL2 CBLB ANKRD44 RIN3 UBAC2 SCML4 FAM49B PCGF5 BHLHE40-AS1 AHR CELF2 ATXN1 CARS2 CCDC88C CDC42SE2 KLF13 FYN LEPROTL1 TC2N G3BP2 LINC01934 MYH9 RUNX1 AKAP13 SEC22C RALGDS MTO1 IKZF3 RPS6KA2 TNFAIP8 FBRS PREX1 SMAD3 STK17B DNAH2 CAPZB RHOH ARAP1 PDE4D AL139807.1 SEMA4D MAP3K5 MALINC1 AC068896.1 ITPR1 ITK LNPEP MAML2 RIPOR2 PRKCQ ZBTB25 IMMP2L H3F3B RFX3 MXI1 PTMA ARID1B ARMC2 CYTIP NCOA2 HOOK2 IGF1R ITGA6 MGAT1 MACF1 ADARB1 RORA TBC1D14 CCDC12 AC099063.1 RAPGEF1 PIP4K2A BCL11B RASSF2 SPTBN1 ERN1 CAMK1D SEPT9 GRK5 MBP SMG6 NFATC2 CD247 R3HDM4 MFAP3\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Effector CD8+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SEMA4D TSPOAP1 UBAC2 RB1 RUNX3 P2RY8 FOXP1 CELF2 RUNX1 SEPT9 LINC01588 LINC00598 AC009126.1 ITPKB KLF13 MBOAT7 TTC33 PITPNC1 AC096920.1 PRKCH PTK2B PLEC AC068896.1 TNRC6B IRF2 AC079313.2 ST3GAL1 IKZF1 PRKCQ PDE4B ITPR1 ARSG RAP1A EPHA4 LINC00649 LINC01126 ANKRD44 IL7R CDC14A AC020911.2 LBH TGFBR2 CRYBG1 PPP2R5C SORL1 MAML2 ARHGAP26 PIP4K2A CDK6 RAD51B TNFAIP8 CDKN1B ADCY7 C15ORF53 NFKB1 BCL2 ZNF652 SMG6 ATP10A SUCO BCR NEMP1 MRPS27 CSGALNACT1 TG HDAC4 SOD2 GRK2 DUSP22 SMAD7 DGLUCY G3BP2 SLC39A11 PNPLA8 STK17B RASA3 ZNF367 CD96 TRABD2A NFE2L2 CD44 FYB1 SDR42E2 ST6GAL1 ETS1 C3ORF18 FRYL MDFIC RIPOR2 ATG5 ARHGEF3 HIVEP3 HBP1 GLB1 ATXN1 DOK2 MAN2A1 LTBP3 RAPGEF3 EXOC5\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Effector CD8+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: CELF2 LDLRAD4 SLC25A26 FYN STAT4 FOXN3 RB1 ETS1 HDAC4 CHST11 ATXN1 GNG2 NCOR2 PITPNC1 ZNF217 TNFAIP8 HNRNPL AHR CCDC88C MICAL2 FOXP1 GPR68 UBAC2 SEMA4D ITGAE ANKRD44 SEC22C LITAF CAMK2D ARHGAP25 STAMBPL1 SLC6A6 UPF2 DNM3 PPP2R5A ZNF831 PDE4B ZFP36L1 WDR1 GNPTAB MBNL1 BCL2 HIVEP2 SMAD3 AC016831.7 FAM19A2 HIVEP3 AMN1 SUCO LRRC8C-DT GRK5 SGMS1 LINC01934 ARHGEF3 IKZF2 AMZ2 HIST1H1E SLC16A7 MBP GATAD2A FAM107B SIAE PAG1 RMI2 DUSP16 FIZ1 LIN54 SH3BP5 ATOX1 MTA2 KDM4C GSK3B IL7R LINC00385 TBC1D5 AKAP13 IQGAP2 FSIP1 ANKUB1 ZCCHC2 SPECC1 ZFYVE28 GABARAPL1 HMGB1 CEP85 SH3KBP1 FAM102B ZNF324 STAG1 SMAD7 PATL2 WWOX FAM49B SYNE1 PRKCH GNAI2 ATG5 JARID2 RGS14 MBOAT7\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Effector CD8+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 CD247 TIAM1 RUNX1 CDC14A ZFP36L1 PDE4B AKAP13 FYB1 MICAL2 PVT1 SLC38A1 LINC01004 VMP1 STIM2 AL390957.1 LDLRAD4 KLF13 PITX3 HIVEP2 CYTIP PCAT1 AC016831.7 ATXN1 FAM107B LCP2 TGFBR3 RUNX2 PRKCH IL16 C6ORF89 CHST11 TGFBR2 SERINC5 DNAH2 KAT2B PSTPIP1 LIPA RCSD1 CIC EXT1 PTPN6 LINC01588 CHI3L2 CSGALNACT1 NEAT1 LPP ATAD2 BACH1 SMG6 RNF44 BACH2 DUSP16 C15ORF53 UBAC2 PPM1B RPTOR SGMS1 RPS6KA5 RPS6KA2 G3BP2 ST3GAL1 TOM1L2 STYX RHOF MXD4 SIN3A AL138720.1 EDEM3 XPO6 ADAMTSL4 SEPT9 FLI1 CDK6 USP3 IMMP2L SYNE2 RBPJ SSSCA1 AL359736.1 RPS29 APP DBP PMM1 JARID2 HDAC7 BORCS5 AC093277.1 ANKRD33B S1PR1 ST8SIA4 ARSG BCL9 PTK2B LINC02384 MAML2 RASSF5 ITPR1 CELF2 P2RY8\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Effector CD8+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SIN3A ERN1 STAP2 CHD9 FBXO32 ANKLE2 PRTFDC1 UBAC2 NSMF PHF20 GSK3A ANKMY1 EHD1 TRGV10 PER1 ZBTB22 SKI AUTS2 AL162377.3 MDC1 AC105411.1 AC048341.1 HOMER1 ATAD2 MCM7 ICOS CEP135 SKAP1 ACHE CCSER2 HAVCR2 RCC1L WDR75 RGMB MGAT4A CHURC1-FNTB MRPL4 FLOT1 AVEN BCAR3 POLR3B DNM2 NUP153 PTOV1-AS1 TMEM150B AL662890.1 CACNA1F CMTR1 KIAA0895 AP002990.1 SMG6 UBL7 LITAF SARS TPT1 AKAP11 SQLE GLT8D2 ACTN4 TMEM181 NAA38 MYH9 IRF2BPL SIRT1 DPYD MKRN2OS POGK ASAH1 ANKRD23 PPP1R12B IQCG NMT2 CSRNP1 BNIP3L NXPE3 DEGS1 AC006449.6 ATF6 AASDH PCDH12 AP003385.3 HEXIM1 KIFC1 OSTC FCHSD2 RNF2 HIC1 RPS29 AGO1 MBD3 MAPK1 TLE4 MRPL42 SRP9 TSSC4 CLN8 FOXN3 ID2-AS1 INTS2 CBR4\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Effector CD8+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 ARHGAP26 FYB1 SEMA4D RIPOR2 SPTBN1 ATXN7L1 IL7R DOCK10 SEPT9 RPS6KA2 ARID1A ETS1 FAM49B AKAP13 FYN PDE4D PRKCH HIVEP2 CCSER2 RUNX3 ECE1 HNRNPC FAM129A LINC00598 TRAJ28 STIM2 CASP8 PXN EVL ITK NEAT1 PIP4K2A TNFAIP8 FAM107B TSC22D3 UBAC2 OARD1 CD8A BORCS5 ATOX1 ZBTB16 BCL2 TOGARAM2 RAB27A AC009185.1 UBXN11 ELMSAN1 BACH2 FOXN3 TMEM143 RBMS1 SH3KBP1 MPRIP CHI3L2 CMIP GPRIN3 CCND3 PPP1R10 CBLB FNDC3A HDAC4 PLEC MGAT5 RHOH OGDH PRR14L DAB1 RIN3 PREX1 FOXO3 DUSP10 MBNL2 AD000671.2 MAP3K3 MKL1 TRIM8 MAML2 KIF2A DNM2 XYLT1 LINC01934 AL445231.1 IQGAP2 LAPTM5 AL450998.2 COA1 DUSP4 GRK5 HNRNPUL2-BSCL2 PVT1 MCF2L2 AL031985.4 KDM8 ITPKB AC093010.2 ABTB2 STK4 LYSMD3 KIAA1671\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Effector CD8+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: LPP PPP2R5C PTPRC AL390957.1 FYB1 SPIDR ATG5 OXNAD1 PHRF1 RNF216 ALPK2 MAP3K5 GFOD1 FYN AL138752.2 GNG2 IPPK STAG2 HDAC4 ANKRD44 RASSF5 LCP1 AUTS2 MED12L ARHGAP26 PAG1 G3BP2 ARID1B ACTB HIVEP2 RASA3 DRG1 AL136962.1 DNAH2 UTRN PISD HOMEZ ITPR1 SUCO ZCCHC2 SNAP47 VPS37C CD96 AKNA SCML4 SYNE1 ATXN1 UST PTPRE PER1 TTC39C LPIN2 SEPT9 ZBTB20 LINC01588 PRKCH HMGB1 RAPGEF1 RAB26 TTC33 RUNX1 DNM3 AC022182.1 JAML CD28 PITPNC1 FRS3 PRCP SMAD7 CD82 AL356234.2 CDC14A TCAF1 NPC1 FOXN3 CELF2 FBXL13 KLF9 PHACTR2 FKBP5 FBXO11 LEPROT TRADD NLRC5 FGD3 HSPA13 OTULIN AIM2 ZNF782 POLR1A GRAMD1B GUCY2C PCNP SEPT6 CDK6 TSPOAP1 AC007513.1 FRYL CD99 CABIN1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Effector CD8+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ATXN1 UBAC2 SIN3A CHST11 FYN BACH2 FOXP1 LINC00598 MAML2 TIAM1 LMTK2 P2RY8 ZBTB16 DOCK11 UBXN11 TTC39C AC025946.1 PTK2B KLF13 TSPAN14 TSPOAP1 IL10RA EHD1 CELF2 CAMK2D CCND3 SEMA4D AC068896.1 KLF12 GSR CLASP1 RUVBL1 PREX1 ARHGEF3 IL2RA DOCK10 PTMA JMJD1C CAPZB LINC01126 OXSR1 TGOLN2 AC096920.1 ERGIC1 KLHL32 RUNX1 PRKCB LUC7L2 NR3C2 JARID2 PIP4K2A PRKCH CARS2 FYB1 CD96 CDH23 C15ORF53 CCDC9 PTPRJ XYLT1 FAM102A PAQR8 PIK3R1 PPP3CA RB1 AKAP13 TNK2 CNN2 ACOXL KIAA2026 SUCLA2 PITPNC1 SP1 LINC01588 ZBTB25 PMM1 AL160408.2 ZC3H10 ARID3B RASSF5 TBCCD1 ZNF846 TPRG1 ALG12 AKNA AHR HPS5 PTP4A2 BCL11B GSE1 RUFY3 KLRD1 RALGDS AC008629.1 HDAC4 SH3KBP1 PRKCQ NCK1-DT CDC14A HECA\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Effector CD8+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RUNX1 ANKRD44 LINC01934 ARHGAP26 RIPOR2 SEPT9 IKZF1 PRKCH CCDC88C KLF13 SGK1 ZYX LINC01588 AC068896.1 UBAC2 PTPRC AKAP13 IKZF3 PIP4K2A LINC00598 ETS1 SDR42E2 POU2F2 AHR PPCDC PATL2 PIK3R5 AGO2 HIVEP2 SEMA4D RAPGEF1 LEF1 ABTB2 LDLRAD4 CDKN1B PTPRJ CMSS1 ZMIZ1-AS1 SMAD3 PVT1 TMEM87B CELF2 MAML2 ITGAE ITK UTRN GPR68 ADAMTSL4 BACH2 ZNRF2 WDR74 PTK2B LINC01004 WDR1 TGFBR2 FAM117A PLEKHF1 FNDC3B PASK HDAC4 DRAIC ARHGAP15 CD96 AC013394.1 EHD1 LMNA MYH9 PRKCQ SLCO3A1 SF1 RASSF5 CD226 NCOA2 RALGPS1 MTMR4 LINC00402 HKR1 STN1 STK10 CDC42SE2 IFITM2 CDK13 IQSEC1 DOCK9 ARMH4 HPCAL1 IFIH1 PIK3CD IQGAP2 LINC01126 DIP2C LINC01137 TBC1D14 PITPNC1 HLCS DUSP10 LYST CDC27 TESK1 EVL\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Effector CD8+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FYN RUNX3 PIP4K2A RUNX1 FOXP1 ARID5B ATXN1 VAV3 SEPT9 ARHGEF3 ARHGAP26 NFATC2 ETS1 LINC01588 TTC33 PRKCQ AC068896.1 SYNE1 IKZF1 SETBP1 ANKRD44 RAPGEF1 TRERF1 AKAP13 FBRS HIVEP2 PATL2 INPP4A ST8SIA4 GNG2 TMEM131L CHST11 AL158071.1 FSIP1 RIPOR2 BCL9L RAD51B SEMA4D CELF2 CORO1A LINC01934 AHNAK TBC1D2B RIN3 ZBTB20 ATG5 TGFBR3 HIVEP3 PTPRJ SORL1 UTRN BACH2 TLE4 ITPKB WWOX CYTIP BCL2 KLF13 TRAJ28 CDC14A MGAT4A OSBPL3 IQSEC1 CBLB UBAC2 CDC42SE2 FLI1 ARHGAP25 ST3GAL1 NR4A2 AKNA AC078923.1 SPTBN1 FBXO32 RPTOR CSGALNACT1 FYB1 DNMT3A AL357060.1 UMAD1 AL390957.1 PIK3R1 RORA-AS1 TSPAN14 FBXW7 GATAD2A AC008764.1 TMSB4X PFKFB3 RNF44 STK10 SPON2 GRK5 GAS7 ZMIZ1-AS1 CCDC88C RB1 PRDM11 AUTS2 ZNF831\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Effector CD8+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 PRKCH ETS1 IL7R ARHGAP26 KLF13 NFATC2 CCDC88C FYB1 ARID5B ST3GAL1 SEPT9 NR4A2 ARHGEF3 UXS1 SERTAD2 RUNX1 ITK RASSF3 HIVEP2 CELF2 CDC42SE2 LINC00598 BCL11B PDE4B LRIG1 RAB27A BCL2 RAPGEF1 CMTM7 RPTOR AP1S3 RNF38 UTRN MBNL1 CDH23 LINC02341 ZFP36L1 P2RY8 AL390957.1 FYN CCND3 AL359736.1 SEC22C MON2 PIK3R1 ZFP36 C15ORF53 PFKFB3 ATF7IP IKZF3 LCP2 UMAD1 SEMA4D MAD1L1 PIK3C3 SLC2A1 TLE4 ATXN7L1 DRAIC ARHGAP25 WWOX CPOX RORA-AS1 NEK7 CMIP RNF44 ANKRD11 RASSF5 SESN1 LINC01934 FIZ1 RHOF YIF1A NUP210 CABIN1 AKT3 LINC01004 IKZF1 DLG4 N4BP1 ATG5 FAXDC2 DENND2D ACTR1A RALGDS MCTP2 TRAJ28 CEMIP2 STK17B UBXN11 ABLIM1 LRRC8A AP000311.1 PLEC MIAT AC069368.1 PREX1 NLRC5 MBP\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Effector CD8+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FYN NCK2 ST3GAL1 PDE4D ARHGAP26 ATXN1 ATXN7L1 AKAP13 PIP4K2A UBAC2 PRRC2B FOXP1 TG ADAMTSL4 BCL9L DLGAP1 ST8SIA4 FAM49B RAB27A SLC15A4 RHOH LCP1 LPP TRERF1 MBP LARP1 LCP2 FLI1 ARHGAP15 GPRIN3 BCL11B AC068896.1 SERTAD2 AC079313.2 PITPNC1 PRKCH TNIP3 AC079594.2 AL357060.1 ITK RUNX1 FAM107B DGKD LINC01126 CCDC88C POC1B TMEM131L AC010894.3 NMRAL1 ARID1B TCF20 IKZF3 C1ORF112 SETD2 ETS1 WWOX ASAP1 ATXN1L MEX3C TPRG1 RGS3 IKZF1 FBRSL1 UPP1 PCNX1 ELMSAN1 NRL MCF2L2 CDC25C LINC01934 ZNF831 IQSEC1 USP3 AC093010.2 GALNT2 LDLRAD4 PNMA1 SH2D2A SIK3 ITPKB SH3BP2 CLASP1 CDYL AMN1 IL16 BNIP2 DOCK8 UST GRK2 CRTC3 FBXO15 TRAF3 RB1 MBOAT7 ABCG1 AC015849.5 SYNE1 RARA SUCO PNPLA8\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Effector CD8+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: TNFAIP8 FYN RUNX1 HIVEP2 PRKCH TRAJ28 PREX1 ARHGAP26 PITPNC1 TTC33 ANKRD44 DNM2 CMTM7 FOXP1 P2RY8 ARHGEF3 ELF1 HIVEP3 RUNX3 MGAT5 NFATC2 CELF2 ST3GAL1 CDC14A PRDM10 RNF125 ZEB2 AL359736.1 PPP2R5C BCL6 AL139807.1 ST8SIA4 E2F3 SEPT9 PIP4K2A STAT4 HIST1H1E TG FAM107B MTA2 INSIG1 B3GNT2 LCP1 AC068896.1 PIK3R5 GPBP1 TRAPPC10 MAN1A1 GTDC1 BARD1 TSPEAR STK10 CDH23 POU2F1 MALT1 ZRANB2 TNRC6B PXN DYRK1A IKZF3 ETS1 SRSF5 MAML2 FAM167B CLDND1 FYB1 STIP1 KLF13 PCGF5 ITPKB PRDM11 PDE4B AC022126.1 IDI1 TBL1XR1 SSSCA1 SMPD1 CTDNEP1 SMAP2 CCDC92 AC005726.1 AKAP13 FAM49B WRNIP1 DRAIC ARID4B RUBCN PRAG1 XYLT1 CX3CR1 STAG2 KIAA0825 PRTFDC1 CUBN RPS6KC1 MBNL1 ZBTB38 TCP1 JADE1 RIPOR2\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Effector CD8+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RUNX1 CBLB AC068896.1 LINC01588 PRKCH BCL11B GATA3 ZNRF2 AC010894.3 CELF2 ARHGAP10 ANXA4 WDFY2 MAST4 STK24 PTK2B SLC2A1 CDC42SE2 PLXNC1 HIVEP3 AC078923.1 KLF9 CLEC2D AKNA PTPRJ ATXN1 MED12L JMJD1C FOXN3 PREX1 ITPR1 OXNAD1 LCP2 NCOA2 TNIP3 MTSS1 AL390957.1 CD247 TMEM131L AP1S3 PATL2 AGO2 AC016831.7 KBTBD8 TBC1D5 TGFBR3 ARHGAP26 ZMYM2 TNFAIP8 AL591885.1 ANKRD44 MBNL1 FLI1 MRPL33 FYN NAV2 RASSF5 AL691403.1 AC022217.3 UBE2D3 NR4A2 CDH23 PTPN6 NUDCD3 IL2RB PRMT5 UBAC2 AFAP1 FUBP1 SAP130 HIST1H2AH EIF4E ABCB1 CHFR ZNF217 DPP4 PANX1 SPIDR PHF12 BBX PRKCA FAM129A STAG2 HNRNPUL1 BACH2 ETS1 RALGPS1 MSI2 RAP1A KLF13 LIMS1 NEMP1 AC027682.4 AUTS2 HIST2H2AC DUSP10 KLF12 ZDHHC20 RPS6KA5 RPS6KA2\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Effector CD8+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PTPRC PRKCH FOXP1 ANKRD44 RIPOR2 TNFAIP8 TRERF1 BCL11B KLF13 ARHGAP26 TG MAML2 HIVEP2 CYTIP AC016831.7 ARID1B CHST11 CPOX ATP2B4 SPEF2 AKAP13 AC093010.2 SEMA4D HOMEZ UPP1 CDH23 NEMP1 OSBPL3 RUNX3 PIP4K2A UTRN AC022075.1 HMGB1 HNRNPUL1 NCK2 CASP8 FOXO3 RAD51B ETS1 CLDND1 MAP3K5 IL7R ATXN1 ARMH4 GTDC1 C4ORF46 ANTXR2 MVB12B UBE2D3 ZBTB20 FBXO34 ANKRD11 INPP4B RORA SYNE1 PER1 HIVEP3 PPP2R5C AC010894.3 FYB1 VMP1 ANKMY1 UBAC2 LGALS8 CEP85 AC068896.1 RASSF3 RAPGEF1 ZNF831 SLC2A1 YWHAZ MAPK1 PRPF38B RIN3 DRAIC RBMS1 ITGAE STIP1 BACH2 SGMS1 CAST KDM4C ATG5 CDC42SE2 SEPT9 SKI CELF2 PCGF5 TESK2 AL390957.1 LCP2 AC084200.1 UBXN11 CAPN2 AL357060.1 JAK1 MPP7 GYS1 LEF1 ETV2\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Effector CD8+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RUNX1 MBP ANKRD11 CARS2 ARHGAP26 HDAC4 GATAD2A FOXP1 UBAC2 DNM2 CDC14A LINC01588 ITPKB CLYBL ARID5B PIP4K2A LPP BACH2 RIN3 FYB1 ZFPM1 TRAJ28 RAD51B SLC12A8 BCL2 RUNX2 EPC1 AKAP13 TIAM1 BCL9L ARHGAP10 PLCL2 PTPRC NEAT1 CDKN1B PNKP PRKCH RARG CDC42SE2 SLC2A1 FOXN3 MAML2 STAG2 JARID2 NFIA MSI2 PLCG2 SIN3A SEMA4D GSE1 LINC00861 FGR ZDHHC14 ITPK1 MED12L TCF7 PLEKHA2 ITPR1 LDLRAD4 HDAC7 RPL13A ELF2 PSD4 UTRN ANXA6 SEPT9 C3ORF58 LINC00598 DDHD1 ARHGAP15 NLRC5 TRERF1 KAT6B MCF2L2 DPF3 MDFIC POLR1A AL357060.1 AUTS2 FOXN2 FCMR PHLDA1 PITPNM2 NOL4L PRCP RASSF3 NCALD ATP2B2 NKIRAS1 INPP4B TOX2 FBXL12 NELL2 SKI CHI3L2 MBNL1 RAPGEF1 TGFBR2 NDUFV2 ARSG\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Effector CD8+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PRKCH ARHGAP26 FYN LINC00598 FOXP1 CDC42SE2 HIVEP2 CIC CHST11 AC016831.7 LYST MBNL1 TRAJ28 CCDC88C STK10 RHOH ASB2 ANKRD44 AKAP13 AC093010.2 MAML2 CD96 LINC01588 ATXN1 PRKCQ ITPR1 ATXN7 NCK2 RAPGEF1 RUNX1 STIM2 MTO1 IKZF1 PIP4K2A CMIP TG BCL11B ETS1 HMGB1 LPP STAT4 RNF216 CELF2 OSBPL3 PITPNC1 LCP2 NCOA2 ASAP1 SERTAD2 ITGAE UMAD1 VMP1 GATAD2A LIPA CASP8 ST8SIA1 TNK2 PLCL2 SYNE1 ARID1B AC008105.3 UBAC2 AL390957.1 SMARCA2 RUNX3 ANTXR2 ATG5 NRL ARMH4 MCCC2 AHR TMEM143 ZBTB20 MBP ATXN7L1 CPOX PHF19 UFD1 SEPT9 RERE MAST4 MKLN1 PTPRC CYTIP ARID5B C15ORF53 AC022075.1 MGAT5 INSIG1 WWOX BICDL1 RALGAPA2 MYH9 NKIRAS1 METTL21A METTL8 PIK3R5 P2RY8 AC073342.1 NOL4L\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Effector CD8+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ITGAE IKZF1 CELF2 PDE4B BORCS5 FOXP1 PRKCH RIPOR2 PITPNC1 BCL9L ARID1B CAPZB GSK3B PCED1B SEPT9 FYN FYCO1 UBAC2 PTK2B AC069368.1 SEMA4D NFKB1 SYNJ2 KLF13 SMG6 TMEM192 AC016831.7 SPAG1 ARHGAP25 JARID2 MGAT5 RBPJ ITPKB CMIP FYB1 CCNL1 TG MDM1 CYTIP SLC35B4 ANKRD11 RORA HIST1H2BC LINC01366 NFATC2IP ATP6V1E2 BCL11B PIP4K2A RUNX1 TMC6 PNKP AL627171.1 STN1 TNFAIP8 WWC3 DSCAML1 SEC31A CUBN SH3KBP1 KAT2B CD247 AHR PDIA4 RALGPS1 TSPOAP1 AL160408.2 ITPR1 RORC AC016907.2 AC010894.3 C10ORF99 MICAL2 PXYLP1 ARHGAP26 GATAD2A SH3BP5 NHSL2 STK10 ARHGAP15 SETD7 SGMS1 FAM214A CDC42SE2 KIAA0513 WHRN NR3C1 L3MBTL3 BRF1 ZBED5 USP36 NR1D1 KCNQ1 ELOVL5 HBS1L CD28 TXK PTPN1 B3GLCT IGF1R RHOBTB3\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Effector CD8+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: IKZF3 TSPOAP1 PDE4D RIPOR2 LINC00649 ZEB2 ATXN1 TGFBR3 SETBP1 CFLAR MYH9 RUNX3 RORA-AS1 BCL11B PCNA EPM2AIP1 ARSG HIVEP3 DUSP10 ATG5 CPVL TRANK1 IFNG-AS1 UTRN ARAP1 CD247 OGG1 PPP3CA BHLHE40-AS1 DOCK3 NOL4L PLXNA4 FBXW7 AC005523.1 SLC11A1 JARID2 NFIA RBM14 AC008438.1 HMGN4 ITPKB ABHD15-AS1 GRAP2 TMEM87B AL035530.2 LINC01126 MBNL1 NSD3 DOCK5 AC068896.1 C1ORF112 TIPARP PIGU CLASP2 LINC01004 MYO1G THADA NPHP4 ZNF558 BFSP1 L3MBTL3 SMG6 ZNF683 ELAC2 PTPN2 NELFE CHD8 CGGBP1 PIP4K2A FSIP1 RUBCN PTGER2 RGS9 PSD4 VAMP1 PLAG1 CMC2 NEAT1 SLC7A1 FAM182B FGD5-AS1 AC139887.2 BCL2 AGPAT1 STAT6 GPCPD1 DENND4B PXN TOR1AIP2 MBOAT7 SIN3A NUB1 HMGCS1 TCP1 UBL3 NFATC2 ERCC1 FAM107B ZNF77 MTURN\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Effector CD8+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ACOXL CELF2 TSPOAP1 KLF13 FYN TGFBR2 TRAJ28 RUNX3 FOXP1 PAPSS1 PLCB1 SETBP1 AC010894.3 LINC01588 ZFP36L1 EPC1 MAML2 SEPT9 UBAC2 ATG5 AC068896.1 PIP4K2A LINC01934 ZNF143 NPAT ELF2 RASGEF1B TNFAIP8 RALGPS1 STIM1 CBLB ARHGAP26 KIF2A ETS1 LINC00598 SCML4 CCDC88C MTMR4 AC118549.1 BCL9L TBC1D1 ZBTB10 NR4A2 NEK1 SGMS1 PREX1 SNX16 ASH2L RFX3 LINC01137 TG AC020978.2 RASA3 RGS3 RUNX1 PDE4B ATXN1 NABP1 IKZF1 MGAT5 STK10 ELOVL5 HBS1L ST3GAL1 CARS2 HNRNPL RIN3 VCPIP1 YWHAZ KARS SIN3A GSK3B EMILIN1 TECR FGD3 GRK5 AC069368.1 CD47 RBPJ C15ORF53 LBH RARG LCP1 IRAK2 AC051619.4 ZRANB3 CTH BCL11B ARMH4 GATAD2A RASSF1 PAG1 ZNF131 AC005726.1 HIVEP3 CHST11 RBMS1 TPRG1 P2RY8 TBC1D5\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Effector CD8+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ARHGAP26 ZBTB20 GTPBP6 BCL11B RUNX1 GRK5 CBLB NFATC2 DNM2 ITPR1 PTP4A2 DUSP10 SDCBP NT5E SIPA1L1 PRDM11 NCOA2 TSPAN14 BAG3 AL392046.1 IL1RAP AKAP13 UBAC2 AC137810.1 MSN SARNP RORA-AS1 AL121748.1 NUB1 SLC39A11 UBE2D3 TCF7 FAM117A MCMBP LINC02520 RASSF3 IQGAP2 AC021188.1 MAML2 AC068896.1 AC097534.1 VAV3 IQSEC1 MCF2L2 PTPRE PRKCH LHPP HNRNPUL1 ABI1 ARHGEF3 ACADM KCNQ1 SPTY2D1 AC016831.7 LTA MAN1A1 NR3C1 ANTXR2 MAP3K4 AC016907.2 AL162377.3 TGFBR3 PLCB1 SYNE2 KRAS ATXN1 UTRN BBS12 TBC1D2B RASA2 RNF166 ANKRD13A RPS6 PTPN7 RNF125 GALM CCT8 STK17B SLC39A10 UBE2K LINC01588 KIAA1551 LPP GLB1 TRABD2A MAP3K3 AL157373.2 NAP1L1 PTPRC ZNF487 TLDC1 TRIM8 LINC01980 HMGB1 RUNX2 AL110118.2 ST3GAL2 PNKP FOXP1 LRBA\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Effector CD8+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: STK10 TACC1 TIAM1 LCP2 MRPS30-DT UMAD1 KSR1 LGR6 KIF22 MTMR12 G3BP2 USP7 NUBP1 PTMA GXYLT1 ARSG ST8SIA4 H3F3B CHCHD3 NCOA2 AC011481.2 ESCO1 USF3 ARHGAP26 ITM2C SUB1 RBMS2 CPLANE1 NFATC2 ITPKB NEK7 LY9 ZBP1 KDM3A ICE1 LINC01126 AC009185.1 AL359736.1 WDR1 ANXA6 OSBPL3 SPRYD7 LTN1 TG PTPN2 FBXO31 CACYBP RUNX3 TOMM7 SMAD7 EFNA5 OXNAD1 MAN2A1 KIF13B AC092718.8 GMDS CPOX CRY1 METTL13 AIP LINC01968 CD44 KLHL28 TCTN3 PCAT1 ITPR1 TTC13 CDC42SE2 GUSB EVA1C NOD2 CASP8 CDHR1 AC021752.1 LINC01307 FYB1 FBXO32 ENC1 FAM57B SLC36A1 FLVCR2 USP24 RASGEF1B WBP11 POMT2 CMTM7 SLC25A44 VAV3 N4BP3 SH2D3A OXCT1 HACD4 AC034238.2 PAOX ABLIM2 USP12 UFM1 WEE1 SIL1 KIAA1257\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Effector CD8+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PIP4K2A FNBP1 FOXP1 ARHGAP26 OXNAD1 PCED1B WWOX PRKCH UTRN AC068896.1 PDE4D PTPRM CD226 ARHGAP25 ARHGEF3 ATXN1 ATG5 AC010894.3 PDE4B RAP1A PCF11 SCML4 SLC2A1 IKZF1 LINC01588 HNRNPUL1 SETBP1 SETD2 GRAP2 RIPOR2 HIVEP2 SMG6 DLGAP1 LIPA HOOK2 CELF2 HNRNPL LINC01980 TSPAN14 TOM1L2 PRKCZ REEP5 ATP2C1 LGALS8 ITGAE STIM2 HIVEP3 NUP153 LINC01934 TSPOAP1 SEMA4D POLR1A HMBOX1 ITPR1 DIABLO TMEM131L UBC CD8A M6PR KDM4C CBLB NEAT1 PROSER1 CNDP2 MYO5A IRF2 AGFG2 ZAP70 MAPK13 AC079313.2 TMEM241 CDC14A AL356234.2 AL390957.1 PIK3AP1 CARS2 NANOS3 ARID5B LINC00649 LINC00271 LINC00861 RNF38 TGFBR3 TTI2 PHF12 MAP3K3 PTK2B ZNF831 DNM2 PITPNC1 TMED5 IL10RA OXSR1 EVL TACC1 MSI2 FAM117A FAM129A BCL11B IFNGR2\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Effector CD8+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ARHGAP26 AC016831.7 ANKRD44 TNFAIP8 FAM107B CELF2 LCP2 BACH2 CCDC88C ATXN1 UBAC2 LINC00426 TG PIP4K2A FOXP1 LINC01934 TTC39B ASAP1 RASSF5 PDE4D TRAJ28 AC022182.1 PTPRJ RAD51B RUNX1 PRKCH ZNRF2 RORA FYN TRERF1 ITK MAP3K5 AP000311.1 RAPGEF1 SEPT9 APBB1IP NCALD ATXN7 ARID1B IQSEC1 NFATC2 CD96 PTPRC NCK2 PATL2 MYCBP2 RPN1 KLF13 AKNA PRCP ZC3HAV1 ARHGEF3 PLCL2 TBC1D5 LINC01588 INPP4B ITGA6 HIVEP2 IKZF1 LPIN2 ST3GAL1 HDAC4 TGFBR2 SLC2A1 PHF19 AL031056.1 FAM117A AL390957.1 RBMS1 CDC14A DOCK10 STK10 HDAC6 PRKCQ AL162377.3 AC010894.3 STIP1 TRG-AS1 FYB1 ANO10 DGUOK-AS1 IMMP2L UXS1 BCL11B CASP8 JAML RASA3 AC006449.6 ARHGAP15 LRIG1 CROCC MAML2 NEK7 DUS2 VPS13D RAB27A NFIA ZMIZ1 RB1 CDC42SE2\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Effector CD8+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 ITK DRAIC IKZF3 RUNX1 FYB1 GLB1 PDE4B TTC33 PPP2R5C RAB11A AC068896.1 FYN RIPOR2 NFKB1 PRKCH STAT1 MED15 TNFAIP8 IKZF1 OSBP AL121748.1 TRABD2A TC2N ATG5 BCL9L ARHGAP15 CDKN1B BCL11B AP000311.1 TIAM1 CFLAR AP002990.1 MBP TLDC1 LINC01588 SNTB1 BCL2L1 TRAF3IP3 RFX3 ATXN1 LINC01126 CD8A AFF1 HECW2 ARID4B RAI1 ZBTB21 ETS1 EPS15L1 KLF16 CPOX RPS6KA5 CCDC9 ZBTB20 MYH9 TRAJ28 STK10 RORA CSK LIPA BICRAL AL160408.2 TBC1D5 RUNX3 R3HDM4 ACSM3 PBXIP1 P2RY8 MCF2L2 SLC25A26 MYO18A C1ORF112 DSE SGMS1 CDR2 AL390957.1 LINS1 PRR5L HIVEP3 TLK1 WNK1 MACF1 LIPE-AS1 PRCP TNFSF8 MGAT4A SIK3 ADAM10 ARHGAP25 AC016907.2 PPP1R16B LINC00861 UBE2D3 N4BP1 CHCHD2 ASAP1 G3BP2 ACSL5 AC022075.1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Effector CD8+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 HIVEP2 ATXN1 AKAP13 ETS1 ARHGAP26 ARHGEF3 AC016831.7 CBLB ANKRD44 BCL11B UBAC2 FYN TGFBR2 RALGDS ARID5B KLF6 ZMIZ1 PPP1R10 BCL2 STAT4 ATXN7L1 RIPOR2 HDAC4 LINC01004 C15ORF53 PIP4K2A FAM107B SAMD3 ATG5 PRKCH CCDC88C ELL SYNE1 TIGIT TECR NFATC2 MTSS1 TOX ZEB2 UTRN EPHA4 DNM3 RB1 LPP CFLAR RAD9A ELMO1 MBP AKNA SLC39A10 LINC01588 PRR5L MAPRE2 HAVCR2 STN1 FAM49B BIRC3 EPM2AIP1 CDC14A PATL2 CELF2 BICRAL MIR3681HG GSK3B FYB1 SETSIP MAML2 ATF7IP TSPOAP1 AFF1 NELL2 CPOX TCF7 GPR68 CHST11 MCF2L2 AL359736.1 ATP2B4 FYCO1 MBNL1 CD96 LINC01126 LINC00299 RIN3 CDC42SE2 ANKRD11 C21ORF91-OT1 IL7R POU2F2 RAP1A RHOF SLC2A1 GRK6 TRPS1 ITPKB RUNX1 COTL1 ZCCHC24 COL15A1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Effector CD8+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: IKZF1 CDC42SE2 HDAC4 PRKCH CCDC88C TNFAIP8 LINC00598 CYTIP RIPOR2 HIVEP2 TSPOAP1 BCAR3 NFATC2 RPTOR GRK5 C15ORF53 RHOH AL359736.1 CSGALNACT1 PIK3R3 BORCS5 HIVEP3 PPP1R12A RASSF5 ST8SIA4 AP001107.3 NCOA7 MEX3C IKZF3 AC096920.1 FOXP1 PRKAG2 AL390957.1 CCDC69 IQGAP2 MTIF3 BCL11B MAST4 SLC38A1 NR4A2 THEMIS CNOT3 AC008438.1 TTC33 MED12L PDE4B KIF21B CAMK2D UBAC2 MDM1 NBPF1 GSTK1 PRKACB MIR3681HG ARHGAP25 HMBS CLEC16A CDC14A ZFP36L1 CGGBP1 MNT AC016831.7 ARID5B SEPT11 PATL2 RAD51B ANKRD44 LDLRAD4 ATXN1 ITPR1 STK40 PNKP TNRC6B LPIN1 CDK6 CLEC2D AP000787.1 ATXN7L1 RBPJ LPP ADAM19 INPP4B PIP4K2A SNRK WWOX DOCK10 RAB1A LUC7L2 LINC01934 ZRANB3 LPIN2 BTBD9 AL356417.3 ATP2B2 ARHGAP26 LINC01588 KLF13 ZNF414 MAP4K5 ARID1B\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Effector CD8+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MAML2 RIPOR2 TBC1D5 RORA KLF12 NCK2 MGAT1 RIN3 ANKRD44 CASP9 KCTD7 LBH CDK13 CD8A PDE9A CDV3 KLF13 RPS6KA2 ITK TRABD2A LINC01934 MSI2 CBLB HIST1H2BO PCM1 SMAD3 DOCK3 PCSK5 VAC14 SP1 TMEM131L NAP1L4 LITAF ANTXR2 UBAC2 DBT CRADD AC079171.1 POC1A PWWP2A ZNRF2 METTL23 ELMO1 DIP2A CCDC174 NKIRAS1 NLRC5 NR1D1 SIRT5 RAP1A HIP1 STK10 PMM1 SASH3 CCDC85C MTSS1 RFX3 RBM14 SLC11A1 LINS1 GPRIN3 INAFM2 OTUD5 ITGB1 LINC00299 DKK3 AL035696.3 AC079313.2 DLEC1 STARD5 PTK2B AC025283.3 AEN AASS B3GNT2 STAT1 COX6B1 AL365259.1 NAPA TMEM71 ATG7 SERF2 TIMMDC1 TRAF1 ARHGAP26 CDC37 WDR86 SPG11 HSPH1 FBXO22 ATP11A ARPC5 TMEM192 IL32 STK40 PTPRJ TSEN2 CLTA BAZ1B RPRD1A\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Effector CD8+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: R3HCC1 ATXN1 YWHAZ BID UTRN UBAC2 NQO2 RIPOR2 ITK USP6NL USP12 EVL MAML2 PTPRJ AL121748.1 FAM107B NMRK1 SKA2 TMEM230 ZDHHC5 PTK2B ERLIN2 BCL2 NTNG2 AC096920.1 CENPT PIP4K2A CASK ACTN4 TMEM123 RERE PTGDR ZNF808 IKZF1 RFFL AC021752.1 BMPR1A ARNT REEP4 GPR55 CATSPER4 AP3D1 CHI3L2 PCNX4 GSR RLN3 PPP1R18 ZNF891 DDX60 AC007513.1 TSPAN14 RHOH C20ORF27 SEL1L SYNE3 RNF166 CLDN4 PRTFDC1 ASB4 NPC2 PHF8 MGAT1 CSNK2A2 BIVM-ERCC5 HLA-C UBE2J1 TSC22D2 OXNAD1 INTS6L SIK3 RWDD1 FRG1-DT ANXA2 MGMT PAIP2B AL669918.1 WWOX MORN3 CAMTA1 SPATA41 LIMD1 CAST Z84492.1 HLA-DMA FOXP1 CREB3L2 MYLIP WHRN SNHG8 CYTIP TRAPPC10 DUS2 AL157756.1 LSM2 AAK1 OPA3 STAG1 GRAMD4 AL139246.5 NEMP1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Effector CD8+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: CYTIP IKZF1 SEPT9 AC010894.3 AC016831.7 LINC01588 CD96 LIPA TIAM1 CELF2 ARID1B RUNX1 PTPRC UBAC2 KANSL1 AC068896.1 PIP4K2A ARHGAP15 RPTOR KLF13 CDH23 CCND3 HIVEP2 BCL3 MAML2 RMI2 BACH2 ATG5 SIN3A TXNRD1 NEAT1 PATL2 FAM69A BCL2L1 TG MIR3681HG SGK1 MOB3A MED12L LEF1 RPS6KB2 AC096920.1 RPN1 CYTH4 AL390957.1 KAT2B BCL11B OGDH ITGA6 PRKCH LBH RAD9A RPS6KA2 AKAP13 UXS1 RHOF LCP1 LINC01934 AKNA FAM107B NEK7 CD55 P2RY8 CAMK1D L3MBTL3 RAB27A AC008764.1 ASCC1 ABHD15-AS1 TMEM123 ASAP1 CDC42SE2 STAG2 PRKCB TMEM150B FYB1 CARS2 CHST11 CBX5 ELMSAN1 RASGRP3 NEMP1 NFATC2 TSPOAP1 MYH9 CD2 BCL9L SOS1 HIVEP3 ARMH4 KLF7 USP36 PPP1R21 GLB1L NCOR2 SSSCA1 FGD3 ACVR1B ADCY7 AC009226.1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Effector CD8+ T", "role": "assistant" } ]