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[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MAML2 IKZF1 FOXP1 HDAC4 BCL9L TIAM1 STIM1 EMC9 UMAD1 RERE SEPT9 PTK2B SORL1 BCL11B EVL CD226 LEF1 TGFBR2 TBC1D5 SPTBN1 HOMEZ MAST4 RGS10 TRABD2A RHOH HDAC7 CD44 KLF12 FARS2 CDK6 SKI DNAJC1 SSH2 ZNF846 LINC01126 GSE1 DEAF1 MZF1-AS1 ARHGAP26 NUP210 PBXIP1 ACOXL NCOR2 STAT6 HADH MNT CCND3 YWHAZ C3ORF58 RUNX1 NDUFV2 NPAT PRKCH LTBP4 PAG1 ST3GAL1 DRG1 CMTM7 SFMBT2 PHF12 STIM2 HIVEP2 CARS2 TMSB4X CDC42SE2 LDLRAD4 RPTOR MAPRE2 KLF13 MBNL1 ASAP1 RBMS1 FOXN3 GNAQ CELF2 CCDC88C FHIT RAB26 NFE2L1 WRNIP1 RBL2 IRS1 ZNRF2 SREBF1 MDS2 EIF4A2 PVT1 DHTKD1 SUCO RASA2 ARSG AFAP1 AGPAT1 TSPAN14 RPS6KA2 HMSD HNRNPL HNRNPA2B1 IL7R MCRIP2\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Naive CD4+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ETS1 RIPOR2 TSPOAP1 UBAC2 RASGEF1B PRKCH TIAM1 FYN ZNF846 IKZF1 PIP4K2A KLF12 BACH2 RAD51B FOXP1 STK4 PCGF5 RPTOR PDE4D CDC42SE2 AC008014.1 ATXN7L1 TNFAIP8 CAMK1D AKAP13 RASSF3 MNT ADAMTSL4 DNAH6 ITPKB ZFP36L1 HIVEP2 CDH23 CDC14A TNRC6B ACVR1 PECAM1 SEMA4D ITK PPP2R5C GRK5 ARMH4 AL691403.1 NOL4L P2RY8 SMAP2 PRDM2 CDKN1B CATSPERG SYNE2 LRRFIP1 SEPT11 ERO1B ETV6 MED12L PAQR8 ZNF609 EHD1 CD247 RHOH PRKCA AMPH CDCA3 FAM117A FAM173B WNK1 DNMT3A FLI1 TSC22D2 SOD2 TMEM143 TMEM245 CELF2 TSC22D1 TRABD2A TBCB MPP7 AC093010.2 PJA2 ZSWIM5 RPS6KA2 DIP2B GIMAP1-GIMAP5 MAP3K3 SESN1 TBC1D2B HMGCS1 SHQ1 MAD1L1 GSK3B PLCL2 TMA16 FARS2 SEPT9 TNK2 FYB1 CMTM7 AL445231.1 FBXW7 SINHCAF\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Naive CD4+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: INPP4B ARID1B RIPOR2 CYTIP BICRAL CSGALNACT1 NEAT1 ARHGAP15 LINC01934 LBH RERE STIM1 RCL1 STK40 UBAC2 NEK7 RASSF3 FYN SMAD7 LINC02029 MAN1C1 OPA3 CROCC CDK19 SP2 BCL2 ATP2B4 CASC11 KCNN3 NFATC2 ARHGDIB MIR29B2CHG SEPT9 SPTBN1 DAAM1 UXS1 TTI2 DENND2D PVT1 CREB3L2 SERTAD2 LINC02520 M6PR TAF1 AL392046.1 STK11IP OXCT1 OARD1 MEX3C UBALD1 KCNIP2 KLHL21 HDAC4 RPS6KA2 MLLT3 GBE1 TBCCD1 ATG2B ATAD2 POU2F1 UMAD1 METTL3 APPL2 TOX2 EPC2 AC022182.1 RAB11FIP4 RSBN1 PCSK5 RBL1 PDP1 ATXN7L1 SERINC5 AGPAT1 ARID5B NR4A2 EVL TMEM263 SLC25A38 ADD2 HIVEP2 MAP3K3 TMEM106C SYNJ2 MGAT4A CHD4 ST3GAL5 EMILIN2 ADAMTSL4 CD226 CCDC88C MTFR1 AC013270.1 SARAF AC084357.2 PTPRC ST6GALNAC3 GATAD2B SNX9 C1ORF112\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Naive CD4+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 UBAC2 ATXN1 TIAM1 PRKCH CYTIP IQGAP2 NCK2 SIN3A CD247 CCDC9 ARMH4 CCDC88C PTPRC ELMO1 RPS6KA2 KLF7 SERTAD2 UBC CUL3 INPP4B NRSN2-AS1 PDE4D FYN ST8SIA1 UXS1 RIPOR2 TRANK1 ZBTB20 ARID5B DOCK10 ACSF3 TPT1 GSK3B CEP97 CAST GPR68 CIC ST8SIA4 FAXDC2 CELF2 ETV6 ZNF250 EYA3 MTO1 ANP32A COMTD1 AC010894.3 UBXN11 CDC42SE2 STK10 BCL2 NLRC5 SYNE2 AKAP13 NR4A2 KCNIP2 FYB1 DTHD1 CCR7 RBMS1 ST3GAL1 TNIP1 ADAMTSL4 DRAIC CD44 WDR75 RPTOR RAB11FIP4 MANBA CEP170 HBS1L LDLRAD4 MAML2 SP100 MTRR ACIN1 HNRNPD FAM117B OTUD4 ABHD15-AS1 CASP4 ISG20 JADE1 ANXA6 ANKMY1 PRMT1 RNF216 AC016907.2 RARA MLF2 ZFP36 PHLDA1 TAB2 TMEM232 CACNA2D4 AC087239.1 ZNF77 AL034549.1 CPEB4\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Naive CD4+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: UBAC2 NCK2 LIPA HOMEZ CROCC DENND2A AL136368.1 CD247 JADE2 CD226 BCL2 CTNNAL1 NMRK1 LPIN2 CCT8 DNPEP VPS4B MAPRE2 ELMO1 RNF216 HNRNPK CCNH TBL2 RNF38 AL139383.1 CAMK4 INPP4B C15ORF53 MBP IGF2R CDC42SE2 NECAP1 SLC22A5 SLC37A3 ACER2 ZFP41 STX17-AS1 UMAD1 SMARCA2 GFM2 IL7R AFG3L2 SP4 SLC45A4 AAK1 ST8SIA4 FAM107A PRR7 CEP152 CDK6 ELF1 TCF4 NDUFV2 IKZF1 C18ORF32 TMEM164 TMEM131L PFDN2 TOMM70 GAS5-AS1 AC092647.5 AL163195.3 GGCX DHRS1 ARRDC3 AUTS2 CNOT7 MIR3142HG MAD1L1 CAST AC107375.1 JADE1 DCAF4 MICU2 TAGLN2 ZNHIT6 FOXO1 SOD2 MXI1 GHITM RABGAP1L NAMPT UFSP2 RNASE4 VIRMA EGR1 TMEM232 LARS2 SLC39A6 PIP4P1 KIAA0895 AL049870.2 MKNK1 ANKRD44 STK24 PAX5 PTPRN2 GATAD2B UBTD2 TBC1D5\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Naive CD4+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: HIVEP2 PTPRC RAD51B SEMA4D MAML2 TSPAN14 SERTAD2 IKZF1 LRRFIP1 LEF1 SPTBN1 AC016831.7 TNFAIP8 TTC33 MGAT5 RUNX1 ST3GAL1 CSGALNACT1 CASP8 PRKCH ETS1 INPP4A KLF7 PIP4K2A ITPR1 HDAC4 RNF216 TIAM1 AC034114.2 IRS1 ADAMTSL4 DDX5 MAD1L1 PVT1 TAB2 CLYBL MICAL2 AMPD3 ARHGEF3 UXS1 LYST PLCL1 INPP4B UTRN MYO1D FYB1 PIGC FYN TBC1D5 AL390957.1 CACUL1 SYTL2 LCP2 TNFAIP8L1 TMEM248 THEMIS ECE1 LPIN2 IMMP2L CDK19 NCK2 GATAD2A ABHD15-AS1 SP4 MACF1 UPP2 PFKFB3 MEF2D BICDL1 AUTS2 TMEM131L CMTM7 NR1D1 PHF12 UMAD1 PRKCQ TXNL1 ARF4 BCL2 NCOA2 MAN1A1 KLF9 TPR EHD1 CD44 AC002310.4 PNPLA8 TRAF3IP3 BACH2 CD48 KANSL1 EEF2KMT SLC16A10 ADD2 ZBTB20 FOXD2 FOXP1 IRF2 ARHGAP15 NKD1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Naive CD4+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ANKRD44 FOXP1 ITPKB LIPA BACH2 HIVEP2 BCL2 HDAC4 CSGALNACT1 ADAMTSL4 PDE4B EVL CIC NEAT1 GRK5 SUSD6 MACF1 LEF1 LPIN2 AC016907.2 TNFAIP8 IKZF1 FOXN2 ZNF837 PTPRC RMI2 ARID5B TIAM1 CDC42SE2 MYH9 AL162377.3 KDM2A GRK2 AC097713.1 CUBN SCYL3 FBXL19 FYB1 ETS1 C1ORF112 SELPLG ST3GAL1 RAB4B-EGLN2 HDAC7 AP000311.1 ESYT2 MBP NEK7 MARK4 PPP2R5C ARL4C UBAC2 RUNX1 NOSIP MAP4K4 ZC3HAV1 RERE NEDD9 HNRNPC MLLT3 LASP1 KLF12 LEPROTL1 AC116366.3 FBXO5 PATL2 FOXO1 MIDN DOCK10 RAB7A ID2-AS1 PABPC1 DOCK9 MXI1 STIM1 NBDY ZCCHC2 SDR42E2 SMAD3 FARSA NFE2L2 ZFP36L1 TRABD2A CCR7 HMGCS1 STAT1 RTN4 RAPGEF1 EGR1 TBC1D10A PLCD1 ADK RAD51B FYN SERINC5 GRAP2 PTPRJ MAD1L1 ARHGEF3 ZNF569\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Naive CD4+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: UBAC2 AC016831.7 IKZF1 TNFAIP8 DOCK9 ARID1B LINC01934 STAT1 DLG4 CD247 LINC00598 SERINC5 ITPKB FYN CDC42SE2 ETS1 KDM4B FKBP5 CIC AFAP1 KLF13 SEMA4D MARK2 SP1 MALT1 PATL2 NR4A2 PIP4K2A CYTIP BCL2 SEPT9 MAP4K4 BACH2 ELF1 FGD3 UST ANKRD11 PITPNM2 EVL RASSF3 MLLT3 PRKRIP1 ARHGAP15 RPRD2 ERN1 CLTA CAB39L CASP8 PRKCH CD226 DLEU2 CCDC9 TES PRKCQ ZC3HAV1 AL359736.1 RSPH14 RNF44 PPM1K ARSG LINC01126 BCLAF1 ATG5 ROCK1 AL390957.1 BCL11B TTC33 PIK3R1 WNK1 WNT7A INPP4A RBMS1 ANKRD55 ARPC5 FOXP1 SERTAD2 FRMD4A AHR WWOX TBC1D5 MTMR4 LCA5 WDR1 STK17B CASP8AP2 MNT PNPLA8 HNRNPL GRK5 SUCO SCML4 ANO10 NOTCH1 TECR ELL NELL2 RPF2 QKI FAM49B PRKAG2\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Naive CD4+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 IMMP2L ITPKB UBAC2 RUNX1 CELF2 EVL ANKRD44 MBNL1 LEPROTL1 KLF13 FYB1 IL7R LINC01588 PHF19 CASP8 SUSD6 HOOK2 AP000311.1 LRRFIP1 AL359736.1 CDC42SE2 CDKN1B MYO1D IKZF3 HSPD1 AL160408.2 RHOH EPS15L1 AKAP13 MBOAT7 TBC1D5 NCK2 PIK3R1 TCF7 CCDC88C GNG7 TLE3 XYLT2 IKZF1 AC093827.5 PRKCH DOCK9 ANKH TES LFNG CCND3 AC016831.7 PDE4D CD247 LEF1 SSX2IP AC008124.1 RNF44 ARHGEF3 INPP4B AC010894.3 ARL4C FGD3 RTN4 MIR29B2CHG TNFAIP8 WNT7A ATXN7L1 CDC14A GTPBP6 ARHGAP26 DENND4A MTSS1 XKR6 MXI1 NEMP1 PFKFB3 GASAL1 MOB3A RHEB AC020911.2 ARID5B FYN BCL2 LCP1 DNAAF2 STK17B EMC9 ABCD2 BTG3 AC022182.1 AC079313.2 FSIP1 NR4A2 CD6 UMAD1 ATP2B1 PPP2R5C TNIP1 G3BP2 ZBTB4 AGRN STK10 CMTM7\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Naive CD4+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: HIVEP2 FKBP5 ITK PCAT1 UMAD1 IMMP2L CHST11 DOCK10 NIN ABLIM1 ZNF805 ATXN7 RHOH NEK7 RNF4 ESYT2 PATL2 CDC14A EVL ELF1 KHSRP INSR FAM72B ZYX KIF2A OLMALINC ST6GAL1 MAP3K5 KRI1 DNM3 FOXN3 EPC1 FOXP1 CASP8 RAPGEF6 RPS6KA3 IPMK PPIL3 TNRC6B ST6GALNAC3 JMJD1C C1ORF174 RFX3 MAGI3 ERMN SMC2-AS1 C15ORF53 AC095057.2 KLF9 EPC2 AC009226.1 EEPD1 MRPS27 TRAJ28 RPS6KA2 CELF2 TNIP3 PLCL1 CD96 HBP1 AL392046.1 BBX SYDE2 PCBP3 STK10 CEP112 SPATS2L LTBP3 ARNTL PIEZO1 UBASH3A GNG2 PHF19 GSK3B GRIN3A CPEB4 TRABD2A SYNE2 NR3C2 THAP4 ACTR5 DNAJC15 HEG1 PGM3 DAPP1 SDHAF3 BRF1 LINC01588 WNT7A SFMBT2 ARID1B TMC6 PJA1 KAT6A HECW2 ANKRD44 SH3KBP1 ZNF394 C1GALT1 MAP3K9\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Naive CD4+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ZMYM2 VSIG10 DCUN1D4 ZNF846 CREM GCA MAML2 PATL2 LINC00598 GSK3B PLAA AC092634.5 UXS1 ZMYM5 STAG2 SCARB2 PLGRKT AASDH AKR1E2 ANO10 SAP130 BIN1 CDYL ZCWPW1 KLF13 COX19 EIF4E AL354732.1 GATA3 RPS6KA2 DESI2 TTC39B AKAP11 LDHB WNK1 AC009126.1 MICAL2 TSG101 RGS10 MGAT5 CCDC32 NAT10 TRPC3 PPP2R3B AC008771.1 STT3A-AS1 TTC21B KLHDC4 SDHAF3 ZBTB7B RECQL LCA5 SGCE TKTL1 CGGBP1 XRCC3 ATF2 FAM117B PLAGL1 ELF1 AP001318.2 ADAT2 AC097467.3 ZWINT AC004596.1 PDE5A RORA ATP8A1 LINC01135 EMB PEX1 WWOX BBS10 N4BP2L2 AC079594.2 METTL13 ZNF891 SUCO TMEM87A SERINC5 ATPAF2 AC027644.4 CHD1 CBLB MTO1 CCNH CEMIP2 ZNF33B PLK4 PCAT1 ABCA1 MAGI3 STK17B PTBP3 RALGAPA2 KCNJ1 MBNL1 PHF2 GPBP1 PITPNC1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Naive CD4+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 CCDC88C HIVEP2 ANKRD44 SEMA4D UBAC2 CYTIP FYN ITGA6 RBMS1 LINC01126 NOL4L ARID1A SEPT9 LINC01934 CELF2 HDAC4 TNFAIP8 RNF167 KLF12 TSPOAP1 CD28 SERINC5 PATL2 MNT C1ORF112 AL162377.3 TGFBR2 IKZF1 STK17B BCL11B ETS1 SORL1 LINC00598 GATAD2B SMG6 GPR68 AC009226.1 FYB1 TNRC6B MBNL1 AC016831.7 MSL2 FAM184A RMI2 RPS6KA2 PSMA1 GNAI2 PPP2R5C DGCR2 EPC1 SPTBN1 BCL2 DESI1 KDM4C TENT4B KIAA1551 LCP1 H3F3B PFKFB3 ATG5 TGFBR3 AC010894.3 CCNT2-AS1 CORO1A TRANK1 MYORG ADAMTSL4 ST6GALNAC3 RAI1 AL359736.1 ARHGAP45 AC116366.3 TRAJ28 EPC2 AC011498.1 AC008892.1 TRABD2A MIR3681HG MAML2 RORA TIAM1 CDC42SE2 EPS15L1 SEC31B AP001107.3 RPS12 PTK2B HOOK2 LDLRAP1 BACH2 LRRC8C-DT VAMP1 NUDCD2 MAP4 CD96 DAZAP1 GPBP1L1 HMGB1 IFNG-AS1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Naive CD4+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SPTBN1 CASP8 RASSF3 TNFAIP8 RUNX1 CSGALNACT1 UBAC2 ETS1 FOXP1 ARHGEF3 ITPKB BACH2 RHOH INPP4B SIN3A CGGBP1 SNTB1 PRKCH UMAD1 PRKAG2 TNRC6B AC008892.1 CYTIP AFAP1 CDC14A CCDC9 TC2N GLS LAPTM5 TRABD2A U2AF2 PATL2 VMP1 PXYLP1 CD247 SYNJ2 OXNAD1 AL451062.3 TMEM131L SMAD7 VIPR1 PARD3B APBB1IP TBC1D5 RABL3 AKNA SEPT9 DBP SH3KBP1 AGFG2 GSE1 RIPOR2 SEMA4D MAMSTR PNKP AC007375.2 LBH LYSMD4 PER1 ACTN1 IMMP2L TSHZ2 RBMS1 STK17B ANKRD44 PDE7B PRKACB IKZF3 ARHGAP25 ECE1 RAB7A AL133523.1 TAF15 PAG1 ATP6V1E2 CHMP7 ANKMY1 MGAT5 CIC PHF19 PPTC7 LIN54 TNFAIP8L1 TRAPPC3 ZBTB38 KRI1 ERBB3 AC076966.1 CCDC114 ZNRF2 ERI1 RPS6KA2 PPP5D1 TOX2 GPCPD1 STIP1 UBASH3B POLR1A RGS3 BCL2\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Naive CD4+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: KLF13 FOXP1 ARHGEF3 NEAT1 MAP3K3 RGMB HECW2 FAM117A STAG2 AAK1 ELMSAN1 CYTIP FHIT PATL2 PNKP ARHGAP15 IKZF1 ELMO1 MIR29B2CHG DOCK10 UBAC2 OIP5 CAMK2D NOSIP RPS6KA2 SEMA4D EPS15L1 TSPAN14 TBC1D5 ITK BACH2 CBLB NDUFV2 IMMP2L MDS2 SMARCA2 ANKRD44 ELF1 MAML2 FYB1 JARID2 KAT6B PPP1CA ZNF800 ZC3H4 AF038458.3 CIC IQCD GLG1 SNTB1 CDC42SE2 PAG1 PITRM1 TOX2 ECE1 FYN PTK2B GSK3A SMAP2 TG ZFP36L1 RFX3 CNOT6L RASSF3 FAM107B STAT1 HDAC4 SPTBN1 RBMS1 SYNE1 TRABD2A USF3 UMAD1 INPP4B AC093010.2 OSER1 NELL2 LEPROTL1 ZBTB2 RUNX1 ZNF441 CDCA3 UBASH3B ADAMTS10 CDK6 RPS29 NFKB1 YLPM1 DNMT3A TRAM2 PTPRN2 PLCL1 ERN1 RIPOR2 LRRC8C-DT PARP8 ITPR1 ZNF652 ARHGAP25 SKI\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Naive CD4+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: HIVEP2 FOXP1 SCML4 LINC01588 CELF2 SERINC5 NF1 BCL11B SEMA4D LEF1 C15ORF53 PITPNC1 HECW2 BCL2 TNFAIP8 BACH2 TGIF1 ITK IKZF1 CD247 CHST11 IKZF2 PVT1 SPTBN1 UBE2D3 FYN ANKRD55 CDC42SE2 PIP4K2A IGF2R MAML2 NOL4L RIPOR2 AC016831.7 CHI3L2 MDS2 PALM2-AKAP2 PRPF40A JARID2 LIPA FBXO15 LRRC8C-DT ARNTL MBP SERTAD2 TOX TSHZ1 PFKFB3 PSMA1 UBAC2 HBS1L SLC38A1 JADE2 TLDC1 LINC00598 RASSF5 HIF1A-AS1 CYP2R1 PATL2 TBL1XR1 ANAPC5 PDE7B MAN2A1 UBXN11 YWHAZ SRSF3 STAT1 ZNF217 IL7R GPRIN3 LINS1 ITPR1 MBD1 SLC2A13 DYRK1A RPS12 VPS35 USP22 ZBTB20 ANKRD44 ATXN1 CACHD1 WDR12 AGBL3 SLC6A6 EIF5A CMPK1 KLF13 TNFRSF1B WWOX AL390957.1 APBA2 TRIP12 PTPRC CDK6 MAP3K5 LSM5 NDUFAF6 ZBTB14 STT3B\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Naive CD4+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 TIAM1 TSPOAP1 LIPA ITPKB PIP4K2A TNFAIP8 MAML2 RAPGEF1 KLF13 LEF1 PIK3R1 CPOX SEPT9 APBA2 BACH2 AC068896.1 TNRC6B INPP4B STK4 CYTIP CCR7 TMEM131L LINC00598 CHD7 WBP11 AP000311.1 NCOA2 LEPROTL1 KLF12 HECW2 JMJD1C DOCK9 NCK2 FKBP5 UBAC2 ADAMTSL4 TRAJ28 ZRANB3 AC099063.1 AC022182.1 HECTD1 BCLAF1 TG CIC CRYBG1 ST7L ZNF324 TCF7 STK10 ACSF3 ARHGAP25 MAPRE2 MAN2A1 MAP4K4 EPC1 TRABD2A RPTOR RERE MGAT4A KCNA2 ANKRD44 ANGPTL6 CDK4 SEC22C ZC3H4 PXN SIN3A PDE4D AC009185.1 ZFP36L1 SLC44A2 LBH TTC39B ELMSAN1 CDK17 ZFYVE28 DOCK10 BCOR RIPOR2 PLEC OXNAD1 AC109826.1 RPS6KA2 MYH9 FLI1 AC022217.3 CBLB USP10 UMODL1 ACVR1C HOOK2 RAB11FIP4 SMARCA2 LPIN2 FYN ARID1B BCL3 SUPT5H LINC01588\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Naive CD4+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 BACH2 ARID5B RUNX1 AC016831.7 AC093423.3 PXYLP1 SH3PXD2A BCL11B PTPRC TSPOAP1 FYN HDAC4 TSHZ2 MBNL1 ETS1 MIR3681HG VPS26C LBH PIP4K2A ZNF131 ABHD15-AS1 CD2 PDE4B RIPOR2 CSNK1E RERE IKZF1 SCML4 ARHGAP25 FAM117B LEF1 RORA-AS1 CDK17 ST6GALNAC3 BCL2 TBC1D5 CAMK4 AC009226.1 SEMA4D ANKRD44 DLEU2 TBL1XR1 RHOF SP3 ACTR1A KLHL3 CIC CLEC2D AC010894.3 AC005972.4 ZFP36 MBOAT7 DOCK9 TIAM1 CELF2 LINC00598 SEPT9 AL359736.1 GATAD2A AC004551.1 C15ORF53 SNTB1 C18ORF25 RFTN1 FLVCR2 JOSD1 FAM13A CEP104 NSD3 KIF2A C11ORF65 RPS29 CHD7 PPP1R10 NAPA TCF7 SMAP2 AK5 ITPKB TXK AHNAK SRGAP3 EHD4 PPAT KLF13 MNT MAP3K5 NOSIP EPC1 CERS6 OPN3 LIPA MXI1 STK17A TLN1 FAM222B ATP2B1 FEM1C PDE4D\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Naive CD4+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: CDC42SE2 PRKCH TNFAIP8 WDR19 MAML2 PIP4K2A LINC01004 SNRNP40 ZNF586 CD99 FAM107B VGLL4 CDKN3 INTS6L SULT1B1 HIBADH LAMA3 AP000880.1 NDRG1 XPNPEP1 BCL9 ZFP36L1 PSAT1 RPTOR SIL1 ADAMTSL4 FTSJ1 ATP2B1 PWWP2A CD3E USP42 PYM1 TG ASTL TRABD2A ATF7IP JMJD1C ATP2B2 MBD1 ZDHHC14 RPL22L1 HUS1 PIK3C2B ERAP1 PDE4B RUFY3 MAP3K1 TBC1D5 CHFR LINC01588 LINC00861 MTUS1 GPRIN3 CD14 CAMK4 AL137802.2 AC068888.1 HEBP2 SUN1 FCMR RIN3 IFRD1 PLEKHA2 CEP85L MALINC1 TTYH3 ATP6V1G2-DDX39B C1ORF112 PTPRJ ADAMTS13 RAB2B AC006042.1 FLII SLC25A6 GINS4 ZBTB7B FAM172A CDC42 CDK13 TIAM1 P2RY10 ARPC5 P2RY8 NEMP1 TTC13 FRMD4A FOXP1 IPCEF1 AC104123.1 CUL5 MRPL15 BPHL GOLGA8A PPM1K CLK4 UBP1 EEPD1 PDHX CTDSP2 DLG4\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Naive CD4+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: LINC01588 ANKRD44 TOM1L2 PRKCA RAD51B AMOT RNF167 FOXN3 BCL11B PITPNC1 MAP3K3 EHD4 TSPOAP1 ZBTB25 RPTOR ACTN1 PLCL1 KANSL1 MARS TM7SF3 AL163932.1 HDAC7 ACIN1 TC2N SP140L TMED5 COTL1 SUCO RNASEH2B-AS1 SMG6 DLEU2 GLS SERINC5 AL136368.1 NF1 TMEM229B KANSL2 NR1D1 DDHD1 RUNX1 AC005726.1 HSPD1 MIR29B2CHG FAM174B PTPRC STK10 CCNT1 EIF1 MTSS1 LEF1 CBLB RAB30 UTRN PRKCH PLK3 CTC1 PER1 ZFP36L1 G3BP2 HECW2 MYO1C DIP2B FANCG CCDC85C CCDC88C STT3B CHD1 PSME4 PARD3B PCF11 MAP3K12 RBM15-AS1 ALG5 CCNY PPP2R5C LGR4 MID1IP1 ATP11B SMG1 PRRT1 ELF2 MICAL2 TTC8 IKBIP LINC00861 VIM-AS1 TLDC1 HDAC4 CDAN1 CALD1 ALG1L2 ARHGEF3 DUSP14 CAB39 LMBRD1 ZNF217 C17ORF53 GLIPR2 SPRY4-AS1 DNAJC5B\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Naive CD4+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RUNX1 BACH2 INPP4B FOXP1 TCF7 CCDC88C RPTOR PITPNC1 BCL11B ETS1 IKZF1 NOL4L UBASH3B LINC00861 PIP4K2A UBAC2 ZNF846 LPIN2 NEAT1 LINC01934 ATXN7L1 FIZ1 AC006449.6 PVT1 ITK MPP7 AC068896.1 TSPAN14 LBH RASSF3 AKAP13 ITGA6 FAM117A VIM-AS1 FHIT FAM107B RIPOR2 ARRDC3 CDC14A HOOK2 TGFBR2 AC016831.7 PATL2 GTF2A1 GEMIN7 GLS LDLRAD4 MARK4 SAMD4A LINC00598 ITPK1 MIA2 FYB1 ADTRP SMAD3 ELMSAN1 LEPROTL1 PRKCH RGS10 TNFAIP8 TG RIN3 EPC1 IGF1R CUBN RAPGEF6 CELF2 LIPA ATP10A PMEL MNT RB1 PTPRJ PNKP TRABD2A DLEU2 TMC6 RHOH PRKRIP1 RBM20 MEX3C H3F3B ZNF487 DBP SEMA4D AP001107.3 ZMYM2 FAM178B MAP3K14 PRRC2A XYLT1 LDHA HIVEP2 MAML3 NR1D1 AL023755.1 KLF13 ARHGAP26 NSD3 DPYD\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Naive CD4+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: UBAC2 AL162377.3 CCDC88C IKZF1 TNFAIP8 RIPOR2 LRRC8C-DT SCML4 ETS1 ANKRD44 LINC01934 DLEU2 RUNX1 FOXP1 LEF1 ARHGAP25 ATXN1 STK10 LDHB FKBP5 KLF12 TBC1D5 ARHGAP15 SUPT3H FAM117A PTK2B MBNL1 PIK3IP1 ITK NFIC PITPNC1 TSPOAP1 RASGEF1B GATAD2A RASSF3 LRRFIP1 UTRN CHI3L2 SLC39A10 HDAC4 AL357060.1 ELMO1 PATL2 CELF2 FYN INPP4B BACH2 CDH23 SEPT9 IL7R LINC01350 FLI1 TMEM243 GNG2 AC022182.1 SYTL3 PICALM CEMIP2 RPTOR B4GALT4 CCND3 C6ORF99 NCOA7 KCNN3 OPN3 SYNE1 RPS6KA2 MAML2 ARID5B SOD2 RAD51B PAG1 CPEB4 AKNA PNPLA8 KCNQ4 GIMAP1-GIMAP5 CARS2 RAB11FIP4 AC008014.1 LEPROTL1 PDE4B GRK5 MED12L AC068896.1 PRCP PRKCH RNF216 BCL9L LINC01825 TPRG1 ATM UBXN11 AL359736.1 FLVCR2 COA1 GBE1 BBC3 LINC01588 SPON1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Naive CD4+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PIP4K2A RPTOR BCL2 PDE4D MAD1L1 FOXP1 TMEM131L CDC42SE2 ANKRD44 MBNL1 SIN3A PITPNC1 ETS1 SEPT9 CD28 TNFAIP8 NDUFV2 PRKACB FBXL17 IL7R TNRC6B TIAM1 KLF13 SCML4 HIVEP2 NOSIP CELF2 SPG7 MGAT4A SLC38A1 PRKCH BACH2 C15ORF53 ERCC1 IKZF1 ITK SERINC5 AC010894.3 CIC CFAP97 TBC1D5 PTPRJ EPHA4 CAMK2D PAG1 PIK3C2B CD96 TNIK TFB1M INPP5F LINC00861 MAT2B RIPOR2 TGFBR2 CDC73 PLCL1 TLE4 AIP ITGA6 AC009126.1 SPTBN1 LSP1 LINC00598 BCL11B RASSF3 PRKCB TRABD2A RNF157 PTP4A2 HDAC4 OXNAD1 MLLT10 LBH DNMT3A PDE4B FYB1 IMMP2L TRIM8 LDLRAD4 MCM3 AHNAK FOXN3 PTPRC HIPK2 ARRDC3 DGKZ FAM107B NLRC5 AC016831.7 TMEM192 CDK6 BCR AL359736.1 LINC01126 MBOAT7 TRAJ28 ST8SIA1 ADAMTSL4 ELMSAN1 NEAT1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Naive CD4+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PVT1 IKZF1 FAM107B AC016831.7 KLF12 INPP4B CELF2 CYTIP LINC01126 HECW2 TMEM123 MAML2 PRKCA UBAC2 CD247 TNFAIP8 SCML4 ETS1 LRRC8C-DT FAM117A LINC00598 FAM117B COA1 CKAP4 IMMP2L ANKRD11 FOXP1 PIP4K2A TRAJ28 ZNF831 SERINC5 EVL LINC00861 LEPROTL1 DENND5A FYN RBMS1 MIDN LPIN1 YWHAZ AC006369.1 TGFBR2 CCR7 ITGA6 STIP1 TMEM131L S1PR1 STK17B CCDC88C RBL2 CDH23 BCL2 PHF19 TXNL1 LINC01004 TSPAN14 HMGB1 AC022182.1 UBE2D3 MYO1D SARDH KDM4C CASP8 CD44 ZC3HAV1 CAMK2D SVIL LINC01588 DGKD RASGEF1B RNF125 ST3GAL1 CD96 CDK13 RUNX1 POU6F1 TMEM116 PPP2R5C MTO1 LRBA TCF7 FYB1 XPO6 MTSS1 ZNF217 ITPR1 AC008124.1 TES NLRC5 TRIM14 ZBTB16 SHLD1 RGCC AC109587.1 DSE MCM3 PITPNC1 CSK PRCP AL139125.1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Naive CD4+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: HIVEP2 LINC00598 FYN TNRC6B CDC14A TNFAIP8 LINC01588 PRKCH SERINC5 KLF13 CASP8 APBA2 HDAC4 SEPT9 PPP2R5C STK10 BCL2 PNKP SORL1 CHD1 STK17B ITK MTO1 FNBP1 MGAT5 DUSP10 INPP4B GNG2 UBAC2 LRIG1 CD96 PDE7B CCND3 KLF7 CIC TOR1AIP2 SCML4 TECR AP1AR AC005726.1 RAPGEF1 CAMK1D AC008937.1 KDM4C TTC39C SGMS1 PTK2B LTBP4 ANKRD44 UXS1 BACH2 ATXN1 C3ORF18 AHR DNAH2 CD82 GNG7 NFATC2 TBC1D5 AC020743.2 DGKD TBC1D4 ATG5 PBX3 DEGS1 LTA SNTB1 AC137810.1 CEP85L PDE4B CYTH1 CSGALNACT1 LINC01934 BHLHE40-AS1 LEF1 PRR5L NFKB1 PPP1CB MLEC ZCWPW1 TMEM243 TTC21B UTRN HECA YWHAZ RASSF3 SPECC1 NSD3 GYS1 POC1B HNRNPF TBC1D14 NDUFA4 TIAM1 LRRC8C-DT PNKD HOOK2 FAM167B NIPBL TIGD4\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Naive CD4+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ANKH PCED1B LPXN CCDC90B PJA2 AC024257.1 CDKN1B DYNC2H1 CD96 AL591885.1 LDHB ARHGAP15 ANO10 CDH13 PLSCR2 TMEM126A MLLT3 GNG2 C2CD5 RHOBTB3 GRPEL2-AS1 INTS8 LRRC8A AP002990.1 MTERF3 CDK19 CEMIP2 SNX10 C21ORF2 AC016831.7 BAZ2A RB1 STK10 AC009509.1 WWC3 C19ORF54 ADARB2 ILF2 ANXA7 DNAJB4 MBNL1 KHSRP ITGA4 ERMP1 C6ORF106 C12ORF75 SMG1 CELF2 STK38L GAS5-AS1 RIMKLB TGDS FNDC3B DMC1 DUSP16 FAM76B AC117394.2 PRRC2C BCL2 KDM4C SARDH ARID5B USP33 IDE TIAM1 MAML2 CAT SLC43A1 CAPN15 HERPUD2 MAGOH AC007450.1 LRIG1 FAM131B GPD1L SNTB1 CMTM7 TG PER2 CYB561D1 KIF15 PHC3 SUGT1 MCOLN2 MED19 SEL1L3 CD226 AL137145.1 AFF1 LINC00598 MIAT CHST11 EPC2 MBIP ITK PRPF39 LPIN1 AC007364.1 YEATS2 ATXN7L3\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Naive CD4+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ANKRD44 SPTBN1 RIPOR2 MTMR4 TECR GLS TTC33 TBC1D5 LINC00910 FOXP1 PITPNC1 HIVEP2 BCL11B RPTOR ARHGAP15 EPC1 SH3PXD2A LINC00598 PTK2B CDC42SE2 MAD1L1 ATXN1 ETS1 KRTAP29-1 CSGALNACT1 AP000787.1 TMEM123 LINC00861 SCML4 ETV6 NLRC5 MPZL1 AP000311.1 FOXN3 HECW2 MBNL1 NEMP1 TPP2 LEPROTL1 STAT4 FAM184A IKZF1 AL163932.1 CDH23 STT3B LY75-CD302 PXYLP1 HNRNPUL1 SLC11A1 GPBP1 KLF13 ITK PHF19 SIN3A MAST4 FGD3 LINC01588 KDM2A RBMS1 SMAP2 KAT6A PIP4K2A SNX9 FBXO11 THRAP3 CRTC3 RBBP6 FAM107B CCDC6 RAP2A POU2F1 CEP85L DNM3 GNPTAB OXNAD1 CASP8 BICDL1 MUC1 AP003031.2 AC091948.1 BICRAL GALM FAM168A ZNF580 ZNF217 NKIRAS1 ARSG TSPOAP1 TTI2 AL392046.1 CD2 ZBTB41 CKAP4 TGFBR2 TIAM1 LINC01135 ATP6V0E1 SMG6 TRABD2A SNTB1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Naive CD4+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SNTB1 IL16 IKZF1 ITPKB FOXP1 MFSD8 DNPEP ARHGAP45 DIS3L2 XYLT1 GATAD2A AC009126.1 FYB1 CROCC STIM1 PRKCH MAML2 VPS13D PTK2B NEMP1 FBRS FOXN3 CYB561D1 TBC1D5 FHIT THEMIS NFE2L2 PVT1 ANKRD44 EPS15L1 HNRNPUL2-BSCL2 PRKCB BCAS3 NSMCE1 ZBTB20 MCM9 CYTIP AC005726.1 SOAT1 ABI1 IL7R C15ORF53 AC058822.1 ZFP36L1 RELL1 HDAC4 TMEM143 PRPF40A HLA-DMA NF1 SH3RF3 KLF13 FKBP2 MSRA TSPOAP1 GFOD1 FBXL17 CAP1 KIFC1 TECR TOX2 ADTRP CHI3L2 PRKCQ MACF1 BCL11B KLF16 BACH2 NDUFC1 ETF1 ARMH4 RAP1A AP000787.1 PBX4 LINC01588 TSHZ2 SNX9 RIPOR2 DVL2 TP53BP1 LDLRAD4 TMEM189-UBE2V1 FLNB ST3GAL2 CPEB2-DT PRKCE ABHD15-AS1 UST NCK2 GAS2 ATP8A1 PPP2R5C RPTOR MAN1C1 MGAT4A FAXDC2 PDE4D AL136307.1 KDM7A SLC9A9\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Naive CD4+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 HDAC4 GRK5 AC068896.1 MAML2 ATXN1 CYTIP AKNA PRKCH ETS1 RIPOR2 IKZF1 EVL RHOF SIN3A TBC1D5 ERCC1 ATG5 TNFAIP8 RPTOR TNRC6B SGMS1 ST6GAL1 SUB1 ARID5B FYN ANKRD44 UBASH3B INPP4B SEPT9 HTT IKZF3 CLTA AC010271.1 NR4A2 AL390957.1 CBLB KDM2B C5ORF51 CDC14A ITPR1 TNFSF10 NEAT1 ARHGAP15 ST3GAL1 PAG1 RASGRP1 AC098582.1 IQGAP2 TRANK1 JMJD1C PIP4K2A ZBTB4 SUSD1 ICA1 GLB1 ARID1B MAST4 MGAT4A CDC42SE2 TIAM1 TG CASP8 NR4A1 FGD3 GSE1 MBNL1 CHST11 RUNX1 WDR82 SH3KBP1 PTPRC ATAD2 CCDC85C HNRNPUL1 GPD1L ZNF589 LINC02341 UBAC2 AURKA ARSG BICDL1 SH3BP5 HRH2 TUBA4A C6ORF106 GDPD5 MNT PRPSAP2 RORA-AS1 SEMA4D ZC3H4 ZNF395 AC079313.2 AC009126.1 JOSD1 CSK TMEM131 TTC39B MECP2\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Naive CD4+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: INTS6 SYNCRIP MGAT5 GALNT1 UPP1 NFKBIA TTC39B CMC2 NME7 SEPT7-AS1 RORA-AS1 TSGA10 IKZF1 BAMBI ATP12A MANEA KIF2A SYPL1 CMTM7 TPM4 LINC00893 CBLB HLCS CAB39L BCL2 CNDP2 BBS7 REEP5 AKIRIN2 NEIL2 ZNF521 ITPKB FAM214B ELMO1 TOX CALD1 RCL1 PAQR8 CD99 SUB1 THEMIS KIAA1586 AMPH TYW1B CSGALNACT2 NT5DC2 PLXNA4 PIK3R1 UGP2 RAPGEF2 SCEL TAOK3 AC019163.1 AC007513.1 IL20RA TENT4A LPIN2 L3MBTL3 IGHV3-33-2 UBE2D3 SSX2IP AC027031.2 SPAG6 NR1D1 FOXN3 TMEM123 UST CAMK1G AL162311.3 RAP2A RNF111 SLC25A6 PHC3 TRIM56 RAD54B AC022126.1 KLF1 CAMTA1 AC097534.1 STX7 AF117829.1 ADRA2B SMARCA2 ULBP1 ISPD XPO1 FYB1 RGMB AC090517.4 RPS29 RELL1 FAM117B HBS1L NT5DC1 GCNT1 PPM1B KLHL28 ATM ENKUR AL133523.1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Naive CD4+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: TNFAIP8 TIAM1 UBAC2 PTPRC FYN AC016831.7 INPP4B LEF1 MLLT3 TGFBR2 TCF7 FOXP1 ASAP1 HIVEP2 CSGALNACT1 ATP8A2 TBC1D5 PHF19 SEMA4D LINC01588 FHIT CDC14A RORA MTSS1 LINC00598 SNTB1 RAD51B AC098582.1 PPP2R5C EVL ARHGAP15 CDH23 CELF2 RASSF5 AKAP13 HDAC4 SPEF2 ARHGAP25 ZFAND5 SCML4 BACH2 RMI2 PDE4D CEMIP2 ST6GAL1 LPIN2 AL162377.3 SLAIN1 CD247 INTS6 PTPRJ MAPRE2 PVT1 ARID1B MGAT5 ATP10A AHR ZBTB20 ITPKB ENSA DGKZ TRANK1 TOM1 MYB LCP1 CYTIP IFNG-AS1 UMAD1 ARID4B TRAJ28 THUMPD3-AS1 INO80B RBPJ HMGB1 C1ORF112 FAM161A ZFP36L1 NOSIP STAT1 GNAL MCM9 SEPT9 RAPGEF6 KIAA0319L TSC22D3 PITPNC1 CEP85L KLF13 PNPLA8 FOXN3 ATG5 AC009486.1 STIM1 NR3C1 GSE1 LINC01934 PCAT1 KIF2A FAM13A AP000311.1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Naive CD4+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MAML2 DOCK10 SERTAD2 ETS1 TSPOAP1 KLF12 FAM76B AL359736.1 LRIG1 MBP CDKN3 GNG2 MRPS33 FAM161A ADI1 VIPR1 KLF13 AC024592.3 IQSEC1 TERC ZBTB5 ITPKB IKZF1 MPC2 GDF5 EIF2B4 LBX2 RAD23B CD72 BACH1 AL109955.1 MBD4 GSK3B ENKUR CCDC9 IGSF9B C15ORF53 ARHGEF3 AC022182.1 PRKCA MIR3681HG PTGR2 ELL DOCK8 LINC01135 ALDH6A1 STK24 CRLF3 PXYLP1 BBIP1 ZNRF2 RABGAP1L PTPRJ EMC9 STT3A-AS1 NF1 RAD51B RPTOR SMU1 PEMT USP34 AC008124.1 PLCXD2 TYW1B EMC2 TNFSF8 MAN1C1 AL450998.2 SLC12A7 SF3B5 LMBR1L UBALD2 AC007163.1 RAB8A PFKFB3 PTPRN ARHGAP18 STK17B CABLES1 HMGN4 AL592166.1 SIN3A KLF9 AC083798.2 LMAN2L ARHGAP31 TTC37 AL162431.2 AC243960.1 WDPCP KDM4C AC007950.1 BMT2 DUS2 RAPGEF6 TIMM44 ANKRD44 SELENOI RAB7A MMGT1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Naive CD4+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: CDK6 ZYX IMMP2L ZNRF2 SOD2 UPP1 TBC1D19 BCL2 TPK1 MRPS30-DT DDX3X DUSP10 SERTAD2 RAB11FIP4 EBF1 B3GNT3 SGK3 C8ORF59 PLCXD2 LINC01350 ANXA6 GGCT LEMD1 EPHA1-AS1 PIK3R1 CLYBL COTL1 GPD1L TERF1 POLR3A AK5 TIAM1 PVT1 SLC7A6OS TPGS2 CDC42SE1 SMYD3 C5ORF34 ANKMY2 EPHB6 GPBP1 PPP2R5A NR4A2 ST7 C1GALT1 DISP3 GSTK1 AC008083.1 ASB8 VPS36 STRBP PMEL WDR12 WDR88 EPHA1 MAFK UBXN4 AL080251.1 AL512625.2 XRRA1 RPL37 ZBTB8OS COG3 TXNDC12 AASS ETS1 SELENOF NRIP1 HIVEP2 FAM49B AMZ1 MRPL47 LRRC58 TSC22D2 USF3 LINC01004 OTUD6B-AS1 CCDC7 ZC3H15 CCDC77 CYB5A TNFRSF1B CTH DIABLO PYROXD2 BPGM CCDC59 LINC02042 TTTY15 CDKN3 SYNE1 CMTM7 AL138752.2 MGAT5 SERINC5 AURKA PIGU PATL2 SLC25A28 AC079171.1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Naive CD4+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: AAK1 NFATC2 LINC01126 DYRK1A CCDC88C GNG8 TRAJ28 CSGALNACT1 ASCC1 AL163932.1 TMEM263 RUNX1 DBP NDUFV2 PRCD IL4I1 AL591885.1 LEF1 BCL11B ZNF846 SEPT9 DNAH2 DRAIC ISG20 DPP9 RAI1 MAD1L1 FOXP1 JARID2 CDH23 SPECC1 CHD7 LINC01588 ZNF652 THAP12 AOAH NR3C2 EDEM3 SEC31A SPTBN1 ATP1A1 UBASH3A CELF2 TNFAIP8 TLE4 HHAT DDX5 C1GALT1 ADAMTSL4 MPZL1 AC009126.1 LENG8 NEK7 VASP TMEM202-AS1 IPMK MACF1 SNX9 KCTD21 SMAD2 CYTIP MARS PTPRC TIAM1 AC022182.1 ELF2 C2ORF76 SERTAD2 CDKN1B RAP1A ZNF786 PLB1 RFFL MARCH1 IL16 ANKRD55 SEC23B WDR74 AC104109.3 LINC01004 ADD2 HMGB1 MYH10 RASSF3 STIM1 MBOAT7 SPAG8 ADAMTS10 LIN7C MIR29B2CHG YWHAQ IQUB FAM83D ZBTB7B ST6GAL1 MLLT3 MNT IKZF1 SMYD3 GLIPR2\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Naive CD4+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: IKZF1 LINC01588 AKAP13 UMAD1 TNFAIP8 STK10 RUNX1 ARHGAP15 BCL11B FOXP1 ARMH4 RPTOR AC016831.7 RAD51B CHST11 CDC42SE2 CELF2 INPP4B ARHGAP25 TIAM1 UBAC2 IQUB CCDC88C LCP2 PITPNC1 LIPA ANKRD44 LBH FOXN3 SERINC5 FKBP5 ARHGAP18 HDAC4 KLF9 PRKCH ITPKB TBC1D5 HIVEP3 BNIP2 FAM49B FAM107B LINC00598 ATP10A BCL2 IMMP2L MSI2 TAF1 AC008014.1 LEF1 KLF13 RBMS1 ITPR1 CD82 ACTB TSPAN14 NFKB1 PPP2R5C ASAP1 JAK1 RPS6KA5 NEMP1 AUTS2 MIR29B2CHG RAP2A FYN FBXO15 EVL DOCK9 EMC9 RIPOR2 RHOH NFATC2 TTC33 TMEM59 NIN RNF44 COL23A1 ST6GAL1 ARHGEF3 PIP4K2A CD247 SPTBN1 KLF12 ZBTB25 CMTM7 SYNE1 ANK1 HIVEP2 M6PR SNTB1 STT3B FOXN2 RALBP1 DNM2 RRP9 LINC00861 PTPRO MBOAT7 TNFSF4 ATP6V1G2-DDX39B\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Naive CD4+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 CRYBG1 LPIN2 ATG5 SNX9 LIPA TCF7 CROCC IKZF1 LEF1 RFTN1 AC016831.7 MBNL1 TNRC6B RASSF3 BACH2 RUNX1 ITPR1 TMEM131L BCL2 TBC1D5 ST3GAL1 RBMS1 ANKRD44 ETS1 ERCC1 CDH23 CTDSP2 PRKCH RERE PITPNM2 ZCCHC2 CDC14A LINC01588 CSGALNACT1 FYB1 UBAC2 RPTOR GRK5 SEPT9 RELL1 NOSIP AC022182.1 PCAT1 IL16 PIP4K2A KAT6B SMG6 PDE4D BCL11B TBL1XR1 PPM1K AL669918.1 TMEM189-UBE2V1 AC079313.2 MDC1 HAUS6 ARID1A ITPKB FBXO15 AL359736.1 MACF1 MTMR4 CMTM7 TTC33 RASA2 AC069368.1 NCOA6 CLCN3 TNFAIP8 ARID5B PRKCB SSH2 RB1 KLF12 SORL1 ABLIM1 PDIA4 ALG5 LEPROTL1 RPS6KA5 RASSF5 ARHGDIB TPRA1 ACTR1B CTSB ARHGAP26 ABCB9 AL162377.3 HEBP1 ZNF496 TRABD2A AL138752.2 TNFSF14 KLF13 MARCH4 RAD9A DUSP10 DIS3L2 CD82\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Naive CD4+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SMG6 AKAP13 SEMA4D MBNL1 BCL2 BCL11B RUNX1 AC010894.3 LINC01588 RIPOR2 MAD1L1 RPTOR PIK3R5 PRKCH UBAC2 EIF4E3 ATG16L1 UXS1 CDC42SE2 MAP3K5 KMT2C SMAD2 TRAJ28 NLRP1 KLF13 SNX29 UBASH3B PTPRC ASAP1 TCF7 SERF2 TSPAN14 PATL2 FBXW11 TTC39C RAPGEF1 WNK1 FGD3 CHI3L2 STIP1 FYB1 PITPNC1 MACF1 TBC1D5 METTL9 SLC44A1 AFG3L2 TRABD2A KCNJ10 ACTR5 TMEM238 EMC9 AP3M1 LPXN LBH SUSD4 RNF216 AASDH STAT1 AC008892.1 LINC01524 RNF24 PLCXD2 EMC7 PEX1 AC016831.7 ODC1 MMS19 MALINC1 PSD4 CELF2 SFMBT2 TIRAP CCT8 HIVEP2 NKIRAS1 PDE8A ZNF106 BCL9L TARDBP EPS8 PTK2B SYNGAP1 SLC25A23 KIF22 MAML2 SOD2 MRPS31 FAM214B EXT1 ACTR1B LYRM4 CD72 RHOA CIPC RASAL1 SCML4 TGFBR3 MCM3 NCOR2\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Naive CD4+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PRKCH FOXP1 BACH2 HDAC4 AC069368.1 IKZF1 RPS6KA2 INPP4B HIVEP2 SEPT9 AC068896.1 ITPKB RAD51B AKAP13 MIR3681HG EML6 MAD1L1 TTC33 ATP6V1E2 EVL ANKRD44 HPCAL1 PXYLP1 SERINC5 RASSF3 PITRM1 ATG5 CRTC3-AS1 LINC01934 SEMA4D JARID2 PVT1 TRABD2A TCTN3 CFLAR LPIN2 FGD3 KCNA2 C1GALT1 PCSK5 RGMB TGFBR2 RMI2 ETS1 OSBP ABRACL CABIN1 LINC01588 SERBP1 UTRN PCSK4 MBNL1 FNDC3A ATP2B4 TIAM1 AL591885.1 HIF1A-AS1 AC007450.1 HIVEP3 MPP7 LIMS1 CYTH1 AL512791.2 HIP1 MAML2 IMMP2L PNKP ELF1 ZMYND8 AFAP1L1 LIPA LINC01004 CDC14A ARAP1 RBMS1 LINC00598 RHOH TLDC1 RAI1 CORO7-PAM16 RHOBTB3 RABL3 PHLPP1 GATAD2A CCDC32 ISCA1 THRAP3 DCLRE1C AL133523.1 CHI3L2 PPP1R16B AL359736.1 TRAJ28 KCTD9 PATL2 SEC31A ATP1A1 PARD6A LINC01184 SIN3A\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Naive CD4+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: TTC33 VOPP1 BACH2 PATL2 HDAC4 FOXP1 STIM2 CCR7 TNFAIP8 CERS6 TCF7 TIAM1 CDC42SE2 SEPT9 RAPGEF6 ITPKB PDE4B RERE TSPOAP1 PCBP3 WNT5B MAP3K3 STAT6 PRKCH DNMT3A LINC01588 NEMP1 IRS1 ZFP36L1 FOXN3 AC010894.3 NFKB1 RREB1 TRERF1 CTNNBIP1 CAMK2D C1ORF112 SMG6 VPS13D CDC14A RPS6KA2 LIPA GRK6 CARS2 HNRNPD OXNAD1 DOCK10 AC016831.7 CDH23 GRK5 ANKMY1 SMAP2 WDFY2 IKZF1 PIK3R5 PRKCQ MAML2 BCL2 DCAKD UBASH3B PLXNC1 EPC2 ANKRD44 BAZ2A SERTAD2 RNF167 RGCC ELMO1 BICRAL IQGAP2 CUBN NDUFV2 AC015813.2 ACLY ZNF331 NOSIP SP1 TMEM243 ARHGAP21 S1PR1 HEBP1 NKIRAS1 HOOK2 AL160408.2 SPTBN1 B4GALT1 ETS1 PPP2R5C PRKCA RASA1 CCND3 COX7A2L RPTOR HBS1L AFF1 AC005697.1 TNIK ARHGAP15 DERL2 RAB43\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Naive CD4+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: BCL11B ARHGAP26 AL359736.1 RUNX1 CHST11 RB1 FOXN2 LEF1 IMMP2L TC2N UBAC2 PLCL1 FOXP1 AC016831.7 MAML2 LINC01588 VPS13D PRKCH MAPRE2 SEPT9 SIN3A LINC01841 ITPKB PRKCA LCP2 SKI AP000311.1 USP39 TCF7 PVT1 NEDD4L BACH2 LDLRAD4 ADARB1 HIVEP3 TBC1D5 PCED1B RIN3 OSBPL3 RAPGEF1 ELF1 EML6 RASGEF1B UXS1 CLYBL BCL6 ITK TIAM1 ARHGDIB FYB1 ITPR1 HIVEP2 SLAMF1 ANTXR2 ZFP36L1 GRHL1 LINC01597 AL157373.2 PRCP CHD7 PARP16 CAMTA1 ZC3H4 IFIH1 SEC16A AEN PCM1 RASSF3 PYM1 AC068896.1 CDH23 TLE3 MYCBP2 EPSTI1 ARMH4 IKZF1 STIM2 ZFP36 RABGAP1L SBDS PHF19 CDCA3 PARD3B SAMD3 TPRA1 CPSF6 RHOF TCF4 SUSD6 RNF7 RUBCN MSRA IL1RAP FAAP20 TOM1L2 IGFLR1 UTRN MGAT5 KPNA4 BTBD11\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Naive CD4+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: INPP4B SEPT9 UBAC2 DOCK10 TGFBR2 RHOF LINC01126 UBASH3B ICA1 DLG4 SERINC5 BACH2 GRK6 BCL9L AC009126.1 UMAD1 JARID2 HIVEP2 CASP8 FOXP1 PIP4K2A ELMO1 LEF1 ABLIM1 SPEF2 PITPNC1 HMGB1 C1ORF112 PTPRJ MPP7 PRKCH ST3GAL1 RFX3 ARHGAP25 BCL11B MGAT5 TGFBR3 PXYLP1 AL390957.1 CYTIP CD247 KDM4C CARD19 IKZF3 ARHGAP26 XYLT1 NFE2L2 IKZF1 GRB10 PRKCA SESN1 BICDL1 MLLT3 ZFYVE28 CD44 FYN IMMP2L ARPC5L TMIGD1 ZBTB25 ATG16L1 TNFAIP8 ZNF846 LBH WDFY2 NCOA7 ANKRD44 SDK2 MYCBP2 ATXN1 TANC1 ITGA6 NPAT AKNA CDC42SE2 MAML2 TRMT1L C6ORF89 RIPOR2 PLCD1 RNF44 TRAJ28 FKBP5 PAG1 CHD1 PRKCB CDK19 FOXN2 CDC14A MED12L CSGALNACT1 RASSF3 IL7R STRN3 PVT1 AC010894.3 ARHGEF3 CCND3 KLF12 ARHGAP15\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Naive CD4+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 KLF13 LEF1 MYH9 IKZF1 RIPOR2 DUSP10 AKNA RBMS1 RNF111 AP000787.1 ATG5 FYB1 ARRDC3 ANKRD44 GATAD2A ETS1 AL357060.1 INPP4B UBASH3B CBLB PXYLP1 TIAM1 ABHD15-AS1 CMTM8 CELF2 PTK2B OXNAD1 CCDC88C NFATC2 LINC01934 FRYL TCF7 BICRAL LINC00861 STYX HECA NSD3 TXNRD1 LINC01588 CAMK2D BACH2 FAM117A KAT6B CDC14A MBOAT7 TNFAIP8 SPTLC2 CASC11 AKAP13 BCL11B ARMH4 RNF4 UTRN MBP GPR132 FYN STIM1 NCK2 RUNX1 TNRC6B CYP46A1 MGA ARID1A KIAA1671 NR3C2 SMYD3 ATP10A RASGRF2-AS1 TPK1 AC079313.2 UMAD1 UBAC2 TP53BP1 SGK1 AC007728.2 ITGB5 ZNF384 ITK MGAT4A KPNA4 RHOF STXBP5-AS1 SEPT9 PRKCQ RFFL PFKFB3 PRKRIP1 TARBP1 ZNF846 AC010894.3 ZNF217 HOOK2 B4GALT1 LRRC8C-DT MLLT3 SOAT1 ARHGEF6 DOCK9 RPS6KA2\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Naive CD4+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SEC31A UBAC2 PRKCH PVT1 BAIAP2 TPP2 NUDCD1 MIR181A1HG BIN3 DOCK9 FAM189A1 IVNS1ABP SMARCA2 SLC9A9 HBS1L PPP2R1B AC107959.4 SLC41A3 FAM174B MCM5 ANAPC4 CARS2 LBX2 RRAS2 AL163932.1 WDR89 IKZF1 NFKB1 PGM3 FAM214A ARHGEF7 PDIA5 EIF2AK1 APBA2 GGH TNFAIP8 PECAM1 C5ORF34 N4BP2L1 SEC24D NBAS DTWD2 CTNND2 OXNAD1 WDSUB1 CDC42SE2 AL157756.1 AK5 BCL2L13 TIFA DTX1 CD44 TMEM123 CDKL4 CPOX PPP2R5E AC022182.1 AC079313.2 AL159163.1 RAD51B C4ORF51 ZCWPW1 APP AC005224.2 CD53 GRAMD2B PLPBP CHMP7 CDK4 TRMT10A AQR C6ORF52 ST3GAL1 TMEM185B MFAP3L CEP128 AL356272.1 AL359706.1 ERI1 ATP2B4 IPO5 ARPP19 AL359736.1 HIBADH AL356215.1 NPC2 PPP1R21 NTNG2 SLC30A9 GJB2 LINC00882 GNB5 ESAM FAM98B IL6ST AL357078.1 ARGLU1 MCPH1-AS1 ANKRA2 SENP2\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Naive CD4+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PRKCH FOXP1 LINC01934 CD247 TBC1D5 EPS15L1 TRAJ28 AC010894.3 SCML4 SEMA4D SPTBN1 LINC00598 LDLRAD4 PLCL2 RPTOR CLYBL OXNAD1 PTK2B RIPOR2 TERC DLEU2 PYM1 RUNX1 DAD1 TNRC6B TNIK DCUN1D5 PITPNC1 TRIP12 DNAJB6 CCR7 MAML3 LEPROTL1 BCL11B PDE4D RNF216 TCF7 PRRC2B ANKRD44 AKNA VPS36 KLF9 RHOH STIM1 GIMAP8 C15ORF53 MAML2 TOP1 ZFC3H1 NLRC5 EPC1 AF241726.2 FYN TBL1XR1 AC013270.1 AC079385.1 PPP1R16B AKT1 LBH RABL3 AL359736.1 SAE1 KIAA0355 SREK1 CRYBG1 AC087239.1 CDC14A MAD1L1 ZYX NOL4L LEF1 HIVEP2 BACH2 CIC MAP3K3 PRKCQ RASSF3 DESI2 SYPL1 IKZF1 AP000311.1 HBS1L CRYL1 CAMK2D OPRM1 UBE3D KLHL24 SH2D3C ZCWPW1 TRIM8 NPAT BCOR AC008438.1 PLAUR EFCAB2 USP3 MBP FGD3 SLC25A36 PRKCA\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Naive CD4+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: QKI SEMA4D PRKCH LINC00598 LINC01934 PATL2 IKZF1 RFX3 CELF2 CBLB AL160408.2 C1ORF112 UBAC2 CDC42SE2 PPP2R5C FYB1 FAM107B IQSEC1 AKNA FOXP1 CYTIP PVT1 STAT4 NCK2 BCL11B TTC33 TMEM131L PTPRC MBNL1 DPP4 CD226 NEMP1 KLF13 RUNX1 TCF7 TECR UBXN11 ARHGAP25 YWHAZ HDAC4 GIMAP1-GIMAP5 BCL2 UMAD1 AL138752.2 AC016907.2 PXYLP1 GLS KANSL1 SFMBT2 LEPROTL1 MAP4K4 LINC00324 AC010894.3 LDLRAD4 AL162377.3 TSGA10 DGKZ SERTAD2 ARHGAP15 CCND3 MAN1C1 MAP3K12 PIP4K2A ITK AC008764.1 UBE2D3 RAP2A WNT7A UBASH3B FAM184A LINC01588 AC068896.1 TNRC6B FKBP5 ITPKB DIP2C LIPA M6PR AC009126.1 GRAP2 PRRC2B ATP12A LMNB1-DT AFAP1 CCDC88C MIR3681HG SEC23B FUZ GASAL1 RBM15-AS1 RAD23B SPECC1 COA1 AC008438.1 PTP4A3 ICA1 STAT1 MAPRE2 VGLL4 LBH\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Naive CD4+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 RUNX1 AC016831.7 RIPOR2 UMAD1 TIAM1 HIVEP3 CYTIP TNFAIP8 ASAP1 HIVEP2 ABLIM1 RMI2 PRKCH KLF13 LINC00598 ATXN1 EPS15L1 PCED1B STAT1 TBC1D5 PLEC ZFP36L1 ARID5B ITK SLC45A4 HDAC4 UBAC2 CDC42SE2 AC079313.2 WASF1 ZC3HAV1 CAMK1D ARMH4 STN1 ZNF395 C1GALT1 ST3GAL1 AC096920.1 BACH2 SEPT9 NOL4L GRAP2 PVT1 TRABD2A BCL9L MAML2 MIR3681HG ZBTB16 RASSF3 CSGALNACT1 AL392046.1 FAM107B AC068896.1 AP000311.1 SMG6 IKZF1 LDLRAD4 GSK3A TNRC6B CDCA3 RPS6KA2 CARD19 FKBP5 FHIT RAB43 APBB1IP RHOH DSE FYB1 AHNAK C15ORF53 INPP4B RHOF ELMO1 SGK3 MSI2 RAB11A FOXO1 IQSEC1 LCP1 PPM1B NCK2 AC022182.1 LMNB1-DT POU2F2 ZMIZ1-AS1 HLA-DMA PCGF5 C16ORF72 TG BCL2L1 OXNAD1 PTK2B CD82 PDE4B AL359736.1 ITGA6 NFATC2 BCL2\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Naive CD4+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: LYSMD2 LINC00861 RORA CBLB AC093423.3 MAML2 MIR3681HG IKZF1 UMAD1 IMMP2L TSPOAP1 RUNX1 MFSD6 AC008014.1 TSHZ2 STAT1 PIGN LINC02384 C1ORF112 MBP AFF1 MYCBP2 MIB1 GRB10 LINC00598 KLF13 AKNA LINC01004 ANKRD44 PRDM2 DIP2A RMI2 CYTIP BCL9L FOXO1 CCDC85C FGGY NFE2L3 CDH23 LAMTOR4 CD96 ATF2 NCK2 ATXN7L1 DNPEP PDE4D CDKN1B RAD51B RASSF3 ZBTB20 CIC BACH2 AL162377.3 ACIN1 FYN ARL4C RORA-AS1 UBAC2 FKBP5 NUB1 NDUFV2 FOXP1 FAM107B RNASE4 CASP8 ITK ARHGEF3 TP53BP2 CSK LINC01132 IFNG-AS1 CDC26 RFT1 PFKFB3 ZFP36L1 MACF1 CNOT10 PRCP GPRIN3 AC104472.3 NABP1 INPP4A RELL1 ABCD2 TNFAIP8 HCG27 PRPF40A PTMA UBASH3B TPMT FGD6 TXNDC16 CENPF CRTC3-AS1 MIR29B2CHG PSMB9 ZNHIT6 SLC41A1 HDAC7 CPSF6\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Naive CD4+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: LINC00598 ETS1 CDC14A ITK RUNX1 NDUFV2 FOXP1 TIAM1 TBC1D5 TRABD2A CYTIP SDR42E2 AC068896.1 AC010894.3 TTC33 DOCK9 UBE2D3 ATAD2 MAD1L1 BACH2 NCK2 RIN3 TBL1XR1 ABLIM1 PARP8 STIM1 PRKCH CSGALNACT1 DNMT3A HNRNPUL1 CARD19 HIVEP3 ITPKB HNRNPL MGAT5 ARID1B TNRC6B IKZF1 AC022126.1 AL160408.2 BCL11B KLF9 LPXN AP001107.3 SCML4 PPP1R16B LINC01588 ZNF217 MIR3681HG HIVEP2 MAML2 LCP1 DUS2 ANTXR2 C15ORF53 SERTAD2 HMGN1 DNAH2 C1GALT1 OXNAD1 KLF13 EFCC1 TMEM131L NOP14-AS1 CDK6 TCF7 KDM2A RHOG IL16 SYTL2 PTMA GRAP2 LINC01934 HELB PRKCE XPO6 FKBP5 PVT1 ARID5B UBAC2 RIPOR2 CCND3 SIPA1L3 BICRAL AC008124.1 CARHSP1 CD247 NFKBID ASF1B RAD51B AC007728.2 WDR1 HBP1 DGLUCY ARPC5 HOOK2 MREG PATL2 ADK NR3C1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Naive CD4+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 SPTBN1 SEPT9 LEF1 TRABD2A ANKRD44 BACH2 BCL2 ETS1 MBP STK17B BCL11B HIVEP2 SEMA4D GSK3B CASP8 JARID2 MBNL1 AC020911.2 RERE LINC01588 TNFAIP8 HBS1L CD28 STK10 SESN1 PIP4K2A IKZF3 PRKCH PTPRC PSPC1 RASSF3 FYN SERINC5 RIPOR2 STIM1 FAM117A PITPNC1 FRMD4A TIAM1 LINC00598 TG XKR6 NME9 MAML3 KLHL21 CCDC12 CAMK4 TSPAN14 OSBPL3 DNAH6 CBLB PFKFB3 CCR7 ARL4C AKAP7 MAT2A PITPNM2 AL512791.2 UBXN11 NCK2 AKIRIN2 RPS6KA2 JOSD1 PTK2B RUNX1 TGFBR1 ELF2 PXYLP1 AC011498.1 LINC01132 ZNF846 ABLIM1 AC007728.2 TMEM143 GRK5 MIAT RFX2 KLF13 ITGA6 AKNA SERTAD2 RAD51B CDC14A FYB1 STK4 AC011603.2 TSC22D3 AC061992.1 AL121594.1 EMC9 UBAC2 CCND3 BCR ACTN1 C12ORF57 CSGALNACT1 SLC37A3 IL19 C9ORF43\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Naive CD4+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 MAML2 BACH2 HIVEP2 AL162377.3 TG IKZF1 RIPOR2 CSGALNACT1 ST3GAL1 ASAP1 ZFP36L1 ABTB2 LINC00598 ETS1 STK10 SEPT9 RPTOR RUNX1 IKZF3 IRF2 AC068896.1 CDV3 HIVEP3 TMEM131L MBP MAN1C1 FHIT ANKRD44 SMG6 CIC AL357060.1 PRKACB ENTPD1-AS1 UBA3 CARM1 TBC1D5 RGCC MPRIP KANSL1 FAM214B LEPROTL1 AGRN DUSP22 AC010894.3 PTPRC CCDC88C CEMIP2 TRABD2A PDE4B AL359736.1 DGKZ TGFBR1 TGFBR2 CD82 OXNAD1 XKR6 RCSD1 MYO19 NFXL1 STK17B MAPRE2 KLF9 TRAJ28 BRF1 CMTM7 MEX3C PATL2 OSBPL3 BCL11B MFAP3 NOL4L MEF2D AFF1 AC008667.1 EIF1 PITPNC1 SLC2A1 NLRC5 RASSF3 KLF13 LBH JMJD1C CAMTA1 CARS2 AC016831.7 LINC01588 CAMK2D FLVCR2 MAML3 S1PR1 TFB1M LPP BCL6 FNDC3B LACTB2-AS1 FOXK1 C9ORF72 TIAM1 MLLT3\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Naive CD4+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 IKZF1 PRKCH INPP4B STIM2 BACH2 RHOH SEMA4D CD247 RUNX1 CDC42SE2 LRRC23 MARK4 ITGA6 CDC14A MBOAT7 LINC00598 TMEM88 EFCC1 CIC ARHGAP25 FLVCR1-DT MXI1 KAT6B CELF2 NSD3 FCMR TNIK PRKCE SERINC5 ELK3 MLLT3 DAPP1 MIA3 CCR7 ANKRD11 CD96 CRTC3 RORA-AS1 PRDM10 CREB3L2 EIF5A NFKBIA ITPR1 BCL2 TNFAIP8 BACH1 LIPA AL359736.1 ABCB10 LINS1 PPP1R10 GSE1 SUMF1 ECE1 RASGEF1B MRPL34 INPP5D PRPF40A NFKB1 SSSCA1 CEMIP2 FHIT ZBTB8OS GIMAP8 MBNL1 CNTRL TRAF1 AC097534.1 LBH ARHGEF3 GNG2 PYM1 ZFYVE28 HOMEZ HECW2 LRRC8C-DT ATF7IP UTRN C15ORF53 RFX3 LPIN2 ARHGAP15 PDE4D ZBTB2 SINHCAF CAMK2D SLC39A10 CTLA4 ABHD11 LINC01135 ARRB1 PATL2 AC103724.4 AL392023.2 UBE2D3 CCDC6 INPP5A TMEM143 DNAJB12\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Naive CD4+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 ANKRD44 RUNX1 FYB1 PIP4K2A SCML4 PATL2 ATXN1 CELF2 ETS1 SEPT9 LINC01588 ITPKB BCL2 HIVEP2 TRABD2A TIAM1 CCND3 CYTIP DRAIC ATG5 ARHGAP25 GMFG ARMH4 STK17B CCDC88C RAC2 LIPA AL359736.1 HDAC4 TGFBR2 MAP4K4 PRKAG2 CD164 CD96 TNFAIP8 PAG1 EVL NOL4L POU6F2 RBMS1 PRKCH TGFBR1 RBX1 RASSF3 PLCD1 ZC3H4 AL162377.3 MXI1 DOCK10 SUPT3H LFNG UCP2 CNPY3 PDE4D CDKN1B FBRS HNRNPA2B1 MAP3K3 ZNF638 RORA-AS1 NLRC5 SLC38A1 NABP1 DGKZ LCP1 APBB1IP PLCL1 IKZF3 MAML2 MGAT5 MBNL1 SERINC5 SFMBT2 UBASH3A MED15 CXCR4 DUSP22 FMN1 PHF19 ABHD15-AS1 ELMO1 RGCC STK10 PVT1 AC009226.1 NCK2 FYN BCL11B Z93930.2 ZC3HAV1 RGS10 LRP8 CEP85L CEMIP2 RIN3 PCSK5 MGAT1 KAT6B ZNF609\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Naive CD8+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 RUNX1 RPTOR UBAC2 ARHGEF3 RAD51B SEPT9 MBNL1 BCL11B STK17B RIPOR2 PRKCH LINC01588 CCDC9 SEMA4D RAB27A HIVEP2 RBMS1 RASSF3 IKZF1 MAML3 KLF9 TGFBR2 OSBPL3 TNFAIP8 CPOX FOXO3 ETS1 NR4A2 LINC00649 KLF13 PLEKHA2 AC016831.7 STIM1 ANKRD11 UMAD1 ATXN1 FBRS PRRC2B TNRC6B ZFP36 WDR1 AC116366.3 KIF2A PTPRN2 FYB1 FOXN2 FSIP1 TRABD2A PCF11 BICRAL MAD1L1 JARID2 HDAC4 C1ORF112 GRAP2 ABLIM1 CDKN1B ANKUB1 CD58 AC069368.1 POU2F1 EEPD1 PMEL CD247 BCL9L CCND3 ERBB3 DDB2 ITPR1 MIA2 CHD1 PLCL2 SERINC5 CBLB TMC6 LBH LDLRAP1 PTK2B MFAP3 VIM-AS1 XPR1 MIR3681HG LRIG1 TRAJ28 PNRC1 HIVEP3 ZNF131 ARPC5 AC008014.1 KDM4C POU2F2 SUCO FYN PPP1CA C15ORF53 KLF7 AP000311.1 JAK1 CAB39L\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Naive CD8+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 BACH2 BCL11B FAM117A UBAC2 RIPOR2 HDAC4 LRRC8C-DT PTPRC P2RY8 PPP2R5C CROCC CCND3 SEPT9 BCL2 SERINC5 SEPT6 TNFAIP8 IKZF3 C1ORF112 IMMP2L MAML2 AKAP13 HIVEP2 LINC00598 KLF13 BICDL1 RASSF3 SCML4 PITPNC1 SH3PXD2A PRKCH TNRC6B ETS1 PLEC HBS1L DNAH2 RGS10 ATG16L1 IKZF1 RBMS1 PRKCB CD247 AC016831.7 APBA2 TBC1D5 ANKRD44 PPP3CC CBLB ARHGAP25 RUNX1 CDH23 CARS2 ELMSAN1 FBXO31 SP1 NEK7 CELF2 FOXN2 RHOH TBL1XR1 BCL9L MFSD12 USP3 FKBP5 ARMH4 LINC01629 PIP4K2A SUPT3H TSPAN14 ARHGEF6 HNRNPUL2-BSCL2 LCP2 GSK3B TIAM1 ITPKB FAM96A ARHGEF3 TAF15 LBH MYB MCM9 MX2 SERTAD2 CDC14A CANX CDC42SE2 CIC DNMT3A ARRB1 SPAG7 STK10 PRKAG2 PRKCQ HMGB1 STYX LINC01934 HIVEP3 FYN GPR68\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Naive CD8+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 PRKCH RUNX1 MAML2 BCL11B UBAC2 TIAM1 CELF2 IKZF3 ANKRD44 BCL2 IMMP2L HDAC4 TBC1D5 RIPOR2 CDKN1B TRABD2A LCP2 AL162377.3 LINC00598 MACF1 PREX1 TGFBR2 PIP4K2A PVT1 IKZF1 HIVEP2 GATAD2A SEPT9 HECW2 PDE4B FAM107B SERTAD2 MYH9 PHF19 CASP8 SPTBN1 SNRK PTPRC UXS1 CACNA1E TSPOAP1 FGD3 JARID2 MAPRE2 KCMF1 LRRC8C-DT PCAT1 AL163932.1 AKAP13 HMGB1 BACH2 PLCD1 RPS6KA2 AC016831.7 LEF1 AC009226.1 AP000787.1 EVI5 PLEC AC010894.3 MXI1 CKAP4 ITPKB LAPTM5 ATXN1 AKNA CCDC88C STIM1 MBNL1 MAP3K3 TCF7 MSI2 SNTB1 SYTL2 AP000311.1 CBLB SLC44A1 NEAT1 RAPGEF1 KCNN3 BACH1 RPTOR SRSF3 STIM2 SIK3 SEMA4D ZNF584 CLEC2D CCND3 FKBP5 AC098820.2 KLF12 IFNG-AS1 MAST4 UBASH3B FAM69A ERBB3 AP4B1 AL138720.1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Naive CD8+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: HDAC4 FOXP1 PRKCH ANKRD44 ETS1 BCL11B TNFAIP8 KLF13 CCDC88C SERTAD2 MBNL1 MAML2 GYPC HIVEP2 SSBP3 STK10 ATXN1 IKZF1 TNRC6B NEAT1 ANKRD11 RAB27A AC016831.7 RPS6KA2 BCL2 PIK3CD PVT1 NFKB1 MAP4K4 CCND3 FCMR RGCC PPP2R1A RUNX1 ZFAT SCML4 TBC1D5 LEF1 CYTIP STT3B ZFP36 ZC3HAV1 SNTB1 MYH9 PPP1CA NOL4L OXNAD1 SEC31A RHOBTB3 HNRNPUL1 AC068896.1 SEPT9 RMI2 CA6 AC009126.1 AKAP13 STAT1 AAK1 GNG2 FOXO1 PRKCA ST3GAL1 AC004596.1 PLCD1 SKI CDH23 BCL3 NCK2 GRAP2 RERE ATG5 CD6 TG PNKP RIPOR2 THUMPD3-AS1 XYLT1 PHIP ZZEF1 ELF1 MSI2 PXYLP1 CSGALNACT1 FKBP2 FKBP5 ITK POLR1A ITGA6 GPBP1L1 ZDHHC5 JARID2 ITPKB FYN SIN3A CD55 AL133523.1 LINC01126 STOM FAM117A AL359736.1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Naive CD8+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 KLF13 ANKRD44 TIAM1 TCF7 FYN SIN3A CCDC88C AC069368.1 RUNX1 HIVEP2 CDC42SE2 TBC1D5 FOXN3 DNMT3A RASA3 ITPKB DOCK10 RBMS1 BCL11B AC016831.7 IKZF1 SEMA4D ASAP1 PXYLP1 LINC00598 ITPR1 HECW2 ZC3HAV1 SUPT3H RASA2 KAT6B TRABD2A TMEM131L LUC7L2 NEMP1 BACH2 RPTOR MAML2 RNF44 MAML3 ACTB ITK VPS13D GNG7 CBLB UBAC2 STIM1 LINC01588 RARA PRKCH HDAC4 RASSF5 ARHGAP15 STK17B BCL2 TNRC6B PVT1 NCK2 ECE1 ZNF846 AP000787.1 PKNOX1 LDLRAD4 STK17A CROCC CARD19 IL16 PNKP KLF12 TC2N TSPOAP1 ST3GAL1 LINC00861 CASC11 AKAP13 BICRAL TRAK1 CD96 ARID1B PTK2B PPP2R5C MCM9 PIK3R1 FKBP5 NR3C2 NLRC5 C1GALT1 CMTM7 ZNRF2 PTEN ETS1 KLF7 YLPM1 SEPT9 ZC3H3 MSH2 FAM111A-DT JARID2 TNFAIP8\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Naive CD8+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PRKCH SEPT9 TBC1D5 TRABD2A RAD51B AL133523.1 ANKRD44 ARHGAP26 FYB1 AKNA FYN IQSEC1 CCDC88C PTK2B SERINC5 DOCK10 TNK2 ACOXL ANKRD11 SMAP2 RUNX1 ARMH4 IFFO2 PRKCQ FOXP1 CDK19 SUCLG2 AL157373.2 LFNG ATXN1 PNKP HDAC4 PIK3R1 NCK2 TNRC6B XYLT1 CDC14A TTC39C TANC1 TTC33 ARHGEF3 IKZF1 LINC01588 TRAJ28 P2RY8 CCDC141 LEPROTL1 LEF1 SYNJ2 EVL SLC2A1 LINC00598 MKL1 OSBPL3 OXNAD1 PRKAG2 TCF7 TGFBR2 BICRAL CELF2 PPP2R5C MAML2 NLRC5 BACH2 RASSF3 ZC3HAV1 CBX7 ZNF831 KLF13 IGF1R YWHAZ BCL11B VIM-AS1 ADK ZBTB25 RAC2 CAND2 LASP1 SELPLG ITPKB MYH9 PPM1L LSM4 ETS1 FIZ1 FHIT TPK1 SLC30A7 PCAT1 FAM117B PYM1 ZBTB5 CCND3 TLK1 TNFAIP8 RNLS RAB27A LPXN IFT140 TRAJ50\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Naive CD8+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: BCL2 NR4A2 ANKRD44 FOXP1 EMC9 MEF2D HIVEP2 AL139246.5 BACH2 ARID1B ITGA6 CD226 RUNX3 FLI1 LINC00598 SERINC5 ARID1A PHRF1 FYN ITPKB MTHFD2 DLEU2 FYB1 CYTIP AC034231.1 BCL9L CD6 CIC BRF1 UBE2G1 SNX9 CCDC88C SFMBT2 CAMK4 TLE4 LBH KLF7 MED12L LPXN LINC01588 LEPROTL1 STIP1 PIK3R1 TSGA10 SEMA4D LDLRAD4 CD247 KAT6B INPP5A XKR6 TNFAIP8 IDH1 CORO7-PAM16 KIF13B ARHGAP45 NEAT1 RUNX1 AES NEMP1 RHOF PCM1 HOMEZ NOSIP METTL13 ARHGDIB ENTPD1-AS1 RAD51B ZNF644 UBAC2 HNRNPLL AGO2 TTC33 PARN AC007450.1 TPR PDE4D PIP4K2A NDUFV2 SH3KBP1 CASP8 RNF167 LAP3 KIFC1 RUVBL1 NCK2 LSP1 ESRRA MAP4K4 AC004922.1 LINC01126 MCUB HDAC4 CDH23 CAPNS1 MKNK2 SLC37A3 ADAMTSL4 RPS6KA5 LINC01135 GNG7\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Naive CD8+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ATXN1 TBL1XR1 TRABD2A RPE ARHGDIB CD96 RABGAP1L CEMIP2 LINC01215 SLC15A4 CHD7 GPBP1 E2F3 NFE2L2 TNIK KLF9 IPMK LRCH1 RFX3 PIP4K2A FNDC3B CYTIP AC118549.1 DHTKD1 AP1AR AL591885.1 ADGRG6 YBX3 TRIM5 SLC36A4 DENND2A MAML3 APTR UPF2 PIK3CB NAF1 IQGAP2 PPM1L NDUFV2 LINC02446 RAP2A ORC4 APOLD1 FAM69A RLN2 NFXL1 C3ORF52 ATP10D CCDC88C FAM111A-DT TPK1 AL157756.1 NBN RIC1 TGFBR2 WDR78 OSBPL3 ISM1 IMMP2L NAA50 LINC00355 PCSK5 CTH KANSL1L ESF1 NABP1 AC004554.2 NUDT6 KCTD7 ARHGAP5 BCAR3 PRDM10 ALOX5 CBLB PAG1 MIR3681HG CACYBP AL109910.2 SFXN1 RCL1 KIAA0895 PTBP2 AC016831.7 TSPAN5 CENPL MPP7 AC020656.2 TAF7 GAS5-AS1 RASSF3 ABLIM1 DLL1 CIP2A ARL6 LUC7L2 RAD21 CLEC2D MSRA THOC7 AKR1E2\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Naive CD8+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RUNX1 FOXP1 HIVEP2 TCF7 TRABD2A LINC01934 ANKRD44 ETS1 MAP4K4 CDC42SE2 CYTH1 ELMO1 AC010894.3 PTPRC LDLRAD4 LINC01588 BCL2 PPP3CA CSGALNACT1 EVL SERTAD2 ATG5 BACH2 FOXN3 PIP4K2A AKNA PRKCQ LINC00861 ATXN1 CDH23 STIM1 SPTBN1 UBASH3A UBAC2 IMMP2L ABHD15-AS1 TLE4 FAM107B MGAT4A TIAM1 NPAT PATL2 GRAP2 HEG1 PRKCA ELF1 CDK13 RIPOR2 STK10 STAT3 FAM49B IKZF3 CD247 PRPF40A LDHB AC078923.1 TSPAN5 RASA2 FAM117B AHR OSBPL3 LINC01135 PDE9A LTBP3 ITK MAN1C1 EPS15L1 IL7R SMARCA2 TSHZ2 CUL3 KLF13 SCML4 HK1 ACIN1 AC068896.1 IL16 MAP2K2 TGFBR2 CNOT6L RMI2 HDAC4 ZMYM2 RIN3 AHDC1 PRKCB ODC1 RBL2 RASA3 AL157373.2 RNF167 RARA EDEM3 CCR7 IKZF1 LBH ADK NEAT1 SEMA4D NOP14-AS1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Naive CD8+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ITGA6 SPTBN1 SMARCA2 LINC00598 AC020743.2 G3BP2 SARDH CCND3 NFX1 MLXIP TUBB4B KLF13 PPP2R5C ZNF384 XRN2 CLASP1 MRPS30-DT FRYL ODF2L ST3GAL1 ADAMTS12 ACTN1 CD3E TBC1D5 MIS18BP1 ARHGEF3 Z83844.3 TRERF1 CAPN5 C8ORF37-AS1 GRB10 DNAJC15 RAD51B UBE2D3 SDR42E2 TRMO TRIM4 CABCOCO1 COQ10B EHD1 GAREM2 DDX23 APOLD1 TFIP11 TRIM68 MATN1 PLXND1 SEC16A WDR82 FAM107B RRM2B MIA3 VGLL4 RECK EIF3J-DT TAF9B SLC35A2 SEC61A1 TRIM5 ELP6 AC022217.3 SMPD4 AC007881.2 BORCS5 THEM4 KIAA0895L FYN TBC1D10B AC079313.2 HMGB1 S100A11 PSIP1 AC093277.1 AC008629.1 AC007285.1 AC009185.1 RUNX2 RASSF3 DHX30 RANBP9 TMEM150B AC107214.1 RRAS PTPRO RTTN PER1 RANBP3 ANP32B KDM5A C16ORF72 CBX5 NEXMIF NLRC3 ZNF143 LINS1 TPM3 AP000275.2 AKNA PIK3IP1 PVT1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Naive CD8+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 RUNX1 ZFP36L1 APBA2 KLF13 ANKRD44 MIR3681HG TSPAN14 CYTIP TIAM1 UBAC2 C1ORF112 HDAC4 PTPRJ U2AF2 PAG1 TMC6 CXCR4 SDR42E2 CCNL1 PRKACB LINC01588 TRABD2A GSE1 BACH2 TCF7 AC022075.1 GGT7 LINC00598 PLCL1 ZBTB25 PTK2B GRK5 TNFAIP8 BACH1 AKNA LCP2 LDLRAD4 VPS36 KPNA3 UBXN11 AL162377.3 NRL FAM107B PCSK5 G3BP2 TMEM63A BCL11B BCOR NEMP1 C9ORF3 NID1 AC010754.1 SEPT9 MARCH4 MXI1 CFLAR TLE4 PITPNC1 HCG20 NEDD4L GNG2 KATNAL1 TIPARP RFX1 AGPAT3 DOCK10 RSU1 PAXBP1 CCDC6 RASSF5 TTC39C SEMA4D KCNQ4 GCLC SH3KBP1 LEF1 PCBP3 SGMS1 MAPRE2 ARHGAP25 CCDC38 SLC38A1 RAB30 SP1 AL163932.1 SCLT1 SERTAD2 ANKRD17 TRANK1 SLC25A42 ARHGAP15 SYNJ2 CDH23 PRKCH TG AFAP1 BCL2 SNED1 MLLT3\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Naive CD8+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 FYN RUNX1 SUPT3H TRIM8 FOXN3 SEPT9 PRKAG2 TMEM143 BIRC2 FAM107B RAD51B MBNL1 RHOH LRRC8C-DT MAML2 HDAC4 GPC6 NLRC5 TRAJ28 BCL2 KLF13 FAM214B AL109955.1 LINC00861 BACH2 PCAT1 CELF2 ARHGAP26 LIPA XYLT1 ISG15 CD96 ITPKB TMEM131L ORC4 LMAN2L SEC22C LINC01353 DOCK9 PRKCH EME2 ARHGAP31 STN1 UBAC2 PTK2B NEAT1 RAB2B NMT2 ELOVL5 MSI2 GPBP1 CMTM7 MBP RBM15-AS1 RAPGEF1 TPRG1 CHST15 NCK2 BCL11B PRKCA SIK3 TIAM1 AKAP13 SERTAD2 INPP4B CAPZB NEDD4L CERS6 FOXN2 OGDH USP22 RIC1 RGS10 CITED2 AL157756.1 JOSD1 CDC14A TTI2 STIM2 KAT6A GATAD2A VIM-AS1 LDLRAD4 PITPNC1 AC093010.2 FHIT GRAMD2B SLC4A7 CACUL1 RUNX2 CROCC FLI1 SEMA4D ALOX12-AS1 CCR7 LINC00649 PAPOLA SORL1 SAMD4A\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Naive CD8+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RUNX1 BACH2 FOXP1 CYTIP RASSF3 AC068896.1 CDC42SE2 ETS1 HIVEP2 TIAM1 KLF13 CASP8 PER1 FAM107B SERINC5 TGFBR2 PRKCH ANKRD44 ABLIM1 SEMA4D RIN3 BCL2 MAML2 ATXN1 SH2D3C ADAMTSL4 CD247 IKZF1 MLLT3 ST3GAL1 ANXA6 EPS15L1 PRKACB HECW2 DNAH2 SLC11A1 SLC38A1 SEPT9 NIN CCDC88C LEF1 BICRAL MBNL1 PITPNC1 AC027682.4 LRRFIP1 PTK2B TLK1 TNFAIP8 MSI2 BHLHE40-AS1 G3BP2 ZFP36L1 TRABD2A EVL RHOF CELF2 PIP4K2A SERTAD2 RAPGEF1 ARHGDIB AC016831.7 NEMP1 PDE4D SNX9 MIR29B2CHG UBAC2 LINC00598 SCML4 MAN1C1 AC009126.1 AGPAT1 CENPT ARHGEF7 NEAT1 GSE1 MAPRE2 CARS2 PCSK5 RAB27A PAG1 S1PR1 ASAP1 IGF1R LBH PFKFB3 RAD51B IQGAP2 TSPAN14 CCR7 JADE2 SIN3A MED15 ZNF217 RWDD2B FBRS GATAD2A HNRNPUL2-BSCL2 HNRNPA2B1 NCL\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Naive CD8+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RUNX1 ANKRD44 CELF2 RMI2 BACH2 CCDC88C CYTIP RORA-AS1 MIR29B2CHG TBL1XR1 STIM1 AC079313.2 AKNA ELMO1 CDC42SE2 TRABD2A ETS1 MIR3681HG ST3GAL1 AC109826.1 AP000311.1 ABCB1 SLC38A1 PIP4K2A DOCK10 AL139246.5 BCL11B ARHGAP26 ZNF846 HIVEP3 FOXP1 FGD3 LINC01588 AKAP13 ACTB ERN1 FYB1 GNA13 PRKCH TNRC6B MARK2 LINC01126 GYPC UMAD1 ANO10 TNFAIP8 ATXN7L1 FAM102B CDC14A HOOK2 CSK GRK2 SNX9 C16ORF72 PVT1 SERTAD2 SLC25A6 ZFP36L1 IKZF3 SERINC5 JMJD1C DOCK9 HMGB1 NCK2 LEF1 ANKMY1 TMEM131L TIAM1 AL162377.3 AL163932.1 AC004596.1 LDLRAD4 HECW2 SETD3 SMAD2 ZNF217 AL157373.2 NEAT1 GNPNAT1 AC098484.2 CARS2 SPRED1 SLC25A36 IDI1 CASP8 SCAP ABLIM1 AC007384.1 NOL4L ARL15 TBCB SASH3 AL451062.3 LINC00910 SREK1 GNL1 CCR7 AOAH ZNF292 NR1D1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Naive CD8+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 ARHGEF3 BACH2 SEPT9 FOXN3 CDH23 PRKCH RHOH ELMO1 LDLRAD4 BCL11B RUNX1 PPP2R5C DOCK9 TNFAIP8 JMJD1C IMMP2L PRKAG2 IKZF1 RASSF3 UBAC2 DLGAP1 ACOXL CCDC88C ANKRD44 RPTOR IQSEC1 TSPEAR CSGALNACT1 LEPROTL1 GNAQ ARSG RAB11FIP4 TBC1D5 CERS6 RAP1GAP2 PRKCQ ARHGAP45 FYN DNMT3A ITPKB TNIK TMEM131L CRTC3 TRABD2A SORL1 KLF13 PLCL1 RIN3 PJA2 TMEM230 IWS1 PPFIA3 TNRC6B HIVEP2 MAP3K3 PLEC PPP1CA CAMK1D ATP6V1E2 CYTH1 PLXNC1 HOOK2 MIR29B2CHG RFX3 PHLPP1 SMG6 UMAD1 TRAJ28 SNTB1 HECW2 IFT140 PDE4D PIK3CD COTL1 ZC3HAV1 STK24 ATP2B1 XPO6 MBP DPF3 STX10 GRK6 FNDC3B CELF2 AC016831.7 EEA1 ANKH AL359736.1 MKL1 NFE2L2 AL390957.1 FKBP5 PAG1 RUNX2 LPXN XKR6 MED12L TPD52 AC013270.1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Naive CD8+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: LDLRAD4 AHR MAML2 SORL1 NR4A1 ARHGAP26 RAP2A NFATC2 RAD51B PRKCH RASA2 FAM107B SEPT9 IQSEC1 TSPOAP1 STYX FYB1 LIMS1 PRKAG2 AOAH KLF7 KLF13 MTR CAPZB UBE2D3 TES KRBA1 CD82 FARS2 TBC1D5 ETS1 RASSF5 KIF22 SKI CCDC88C UBXN11 ARRDC3 RNF44 SDR42E2 CARD11 RIPOR2 CDC14A IL6ST CBLL1 IMMP2L HDAC4 AL121983.2 AAK1 PTK2B IL16 ZNF318 BACH2 FLI1 ARHGEF3 ZNF397 CCND3 ZSWIM6 IKZF3 ASIC1 RETREG2 CYTIP RAPGEF1 RUNX2 UXS1 TMEM131L PLK2 AC008014.1 CNPY3 NBN LUC7L2 IKZF1 CUL3 HIST1H2BC RASSF3 PPP1CA RPS6KA2 PPP3CA PCED1B EHD1 CARS2 IGF2R CRTAM FOXN3 TRERF1 WDR78 N4BP1 THRAP3 ANKRD44 FAM85B NOL4L TRAJ28 ATG16L1 RABEP2 AC020911.2 LINC01004 ZBTB25 RUNX1 OPA3 CMIP LINC01353\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Naive CD8+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 RUNX1 C15ORF53 MAML3 LINC01588 RIPOR2 TCF7 MAML2 CDC42SE2 PIP4K2A LEF1 ANKRD44 FAM107B STIM2 CELF2 ATXN1 NCK2 ANKRD11 BCL11B CCDC88C TG TTC33 OXNAD1 TLE4 IKZF1 GFOD1 ST3GAL1 PRKCH AC010894.3 SEMA4D ITGA6 FYN LINC00598 SNX9 HDAC4 ITPKB TGFBR2 JARID2 RCAN3 AKAP13 PITPNC1 ARHGAP25 LINC00649 PATL2 KLF9 HIVEP2 RIN3 UBAC2 KLF7 ARID4B CASP8 TIAM1 TNRC6B SLC38A1 FAM117A LDLRAD4 GRK5 CRYBG1 CAMK2D RARA ZBTB4 AL160408.2 APBA2 AKAP7 RUNX3 TSPAN14 RBMS1 BACH2 BCL2 ASAP1 FKBP5 TMEM131L ETS1 SORL1 PTPRC NEMP1 NR3C2 DNAH2 PCED1B CCDC12 BTBD19 LINC01353 PVT1 ARHGEF3 PRKCA KLF13 AL359736.1 TSPOAP1 KIFC1 ITK CDH23 CYTIP ARID5B WDR89 MPP7 SEPT9 VPS35 CBLB TGFBR1 GATA3\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Naive CD8+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PTPRC PIP4K2A HDAC4 ANKRD44 CCDC88C ITPKB TRERF1 CASP8 TCF7 FOXO1 BCL2 TNFAIP8 LINC00598 ST3GAL1 FKBP5 PRKCB BACH2 LCP1 BCR IKZF1 UBAC2 ACTN1 IL16 HIVEP3 DNM3 TBC1D5 FGF9 TGFBR2 FYCO1 GSK3B IKZF3 RHOF LINC01934 XYLT1 DNAJC27 ZCCHC2 FOXP1 RIN3 FARS2 CARS2 PATL2 MACF1 PHF19 PCED1B MAML3 SEPT9 HNRNPUL1 SEMA4D RERE ETS1 SERINC5 LEF1 SERTAD2 OXNAD1 UBXN11 RNF44 ADAMTS17 RASSF3 TECR AL031727.2 PRKCH DLEU2 DNPEP ATP11C CD96 CBX1 RAD51B MPC2 DIS3L2 PTCH1 DOCK9 MAML2 MED15 DRAIC MED12L TNFRSF10A U2AF2 POU2F2 SEC24C TOMM70 CD247 CDC42SE2 LINC01366 LINC01184 TBC1D1 KLF9 LRBA LAPTM5 CGGBP1 ZFAT TSPAN14 HIVEP2 TRAF3IP3 POU2F1 STK17B PNPLA8 ATP10A RALGDS ARID3A KAT6A\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Naive CD8+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 SEPT9 RIPOR2 SEMA4D LINC00598 TRAJ28 PTPRC VAV3 PRKCH ITPKB PIP4K2A CDC42SE2 FHIT TSPAN14 AKNA INPP4B BTBD11 TBC1D5 AC068896.1 EVL DOCK10 LDLRAD4 PATL2 KLF9 CCR7 PVT1 TGFBR2 STK17B ASAP1 S1PR1 LEF1 SMARCA2 LCP1 TCF7 RB1 GAS5-AS1 ARID1B TSPOAP1 SNX9 RAP2A CD247 UBAC2 UTRN ANKRD44 EPC1 AC009126.1 HIVEP3 PRKCQ RPTOR ITGAE MYCBP2 PITPNC1 BCR MAML3 MLLT3 RPS6KA2 RTN4 SEC22C CYTIP RASA2 PPP2R5C IKZF1 AMD1 LFNG CEMIP2 ISCA1 FBXL19 CASP8 UBE2D3 TIAM1 TRIM8 PER2 NFKB1 FAM69A TG RASSF3 CDH23 PARD3B TLE4 RHOF GRK5 RUNX3 TNRC6B BCL2 CORO1A LINC01135 MGAT4A LINC00649 UMAD1 ST6GAL1 FARS2 FYB1 AL445231.1 STIM2 SMAD2 CDC14A ARHGAP26 AC009185.1 ATG16L1 TNIK\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Naive CD8+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PRKCH IKZF1 FOXP1 SGK1 FYN SERINC5 STK17B ST3GAL1 ITK IMMP2L FYB1 ZBTB16 TMEM123 ABLIM1 CIC KLC2 TOX RIPOR2 PIP4K2A BACH2 SYNE1 TTC33 POLG TNFAIP8 AC068896.1 NCK2 TIAM1 POLM PATL2 VASP DNAH6 NFIX MRPL24 MAN1C1 ATXN1 TRABD2A AC010894.3 ATP10A TCF7 MAML2 STIM1 AKAP13 TRERF1 SEPT9 EPC1 PCAT1 LPP PTPRK FBXW11 CSGALNACT1 CDC42SE2 SSX2IP TPRG1 MAP3K3 IL16 ERAP1 IGSF9B TTC13 AL359736.1 KLF12 KLHL3 WDFY2 MBP PDE4D STK32C NEMP1 CCDC88C CNOT7 RBL2 PTK2B BCL11B ATG3 TBC1D5 HECA WDR74 RAB11A FDFT1 AL133523.1 CMTM7 TG KAT6B CASP7 RMI2 ITPKB MLLT3 LBH AC243960.1 RAD51B DNMT3A DCTN4 EPS15L1 GADD45A ATP2B4 HOMEZ PLCL2 RUNX2 ARHGDIB C2ORF42 MAPRE2 AC012560.1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Naive CD8+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: AP000311.1 CFAP299 NT5C3A PPP2R5C WDR91 ARHGAP10 UBE2D3 ZBTB20 PMEL NR3C2 BCL2 ZDHHC17 SDE2 AP000781.2 CMTM7 ZNF609 PTPRC NIN ADAM11 AC012507.1 MORC3 WDR19 SNHG8 AKNA SPECC1L-ADORA2A BIRC6 TAF1 CHPT1 AC009226.1 CDK6 AC106779.1 USP22 SERAC1 LINC02384 DNASE1L1 SMKR1 PIGF ARSG DNAJB4 CEMIP2 LINC01588 ACSL3 NTPCR AC073934.1 DCP2 CD8B EDAR ZBTB16 HIVEP2 SUN5 PAG1 WWC2 MTMR8 STK39 ELMO1 CCDC92 ZNF787 PTPN12 MAML2 PFKP MLEC TTL ZBTB14 LDLRAD4 ASPHD2 DOCK8 ZMYM5 SCML4 AC113414.1 MOB1B PLAC8 SKA2 C20ORF203 AL158152.2 TGFBR2 RPN1 LDLRAP1 RPL34-AS1 SIRT1 GSK3B ABHD15-AS1 UPF1 SKI RNF145 FAM117B GPR150 MED22 ADGRD1 PRR5L ZSCAN20 RBM15-AS1 ECHDC1 MGRN1 USB1 NUMB STAG2 TSC22D1 PSAT1 UHRF1BP1 HDAC6\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Naive CD8+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ST3GAL1 AAK1 STK10 RBMS1 PTBP2 AC117394.2 CMIP RASA2 LINC02320 PFKFB3 LCP2 SLC25A43 FRMD4B OGDH IL32 AC022126.1 FAM129A RORA-AS1 LINC02341 TNFAIP8 RBM12B DDX6 MZF1-AS1 IL2RB SEPT11 FBXW7 VRK3 ERN1 INPP4A SLCO3A1 CMSS1 AC069368.1 MGAT4A AMZ1 RCAN2 AC092718.2 PANK1 AC093423.3 ARMH4 JADE2 TXNIP IRF4 FBXO31 GAR1 GLIPR1 RPS3 KDM4C MAOA EIF1 ARMC2 ADAMTSL4 TMC1 NAA40 FBXL17 ATG16L2 CUBN SMAD2 KLF13 ERCC6L2 AC007728.2 ST6GAL1 BCL9 ANKRD11 ANKRD44 FAM110A NR3C2 PCGF5 IL21R MAMSTR MCTP2 ABHD17A NBAS DHX36 AMPD3 TBC1D8 ARPC5 WDFY1 TOGARAM2 E2F3 TMEM30A CDK19 FOXO3 UBXN11 CXORF40B RALB RNF44 UPP1 CROCC FKBP5 MGAT5 DACT3 CCDC32 RUFY3 KLHL8 TNFSF12-TNFSF13 ZBTB45 TEF PUS7L AL034549.1 NCS1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Naive CD8+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PRKCH RIN3 TIAM1 FOXP1 GRK5 IMMP2L TCF7 LEF1 CRADD MAML3 IKZF1 GPRIN3 AL359710.1 CAMK2D EVL LINC01588 BCL2 CDC42SE2 KLF9 UBAC2 BACH2 MXI1 MCUB STIM1 PITPNC1 TTC33 CELF2 ATXN1 CARS2 ARID1B KAT6B LINC01004 HDAC4 ARID5B RASA2 LINC00598 NOL4L ETS1 AL357060.1 FAM178B NR3C2 VPS13D SEMA4D SH3BP5L C15ORF53 ZBTB20 TRAJ28 CEMIP2 PRKCQ CDK13 PPTC7 DCAKD KIAA2026 IL19 SLC35F2 UMAD1 ZYX TBL1XR1 RPS6KA5 RPTOR SOS1 PLEC STK10 ACOXL KIF22 NPAT SMG6 PRKCA LINC01934 MFAP3 AC009126.1 STK4 AC093277.1 IQGAP2 PIP4K2A PIM1 AL359736.1 STIM2 AKNA CD96 HNRNPC CD8A FAM102B HIVEP2 YWHAZ OPN3 DOCK9 AC093423.3 RB1 MBNL1 JAK1 RNF6 XPO1 C1ORF112 USP12 RORA-AS1 SMAD3 P2RY8 SEPT9 EPS15L1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Naive CD8+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 SEPT9 LINC01934 AKAP13 BCL11B IKZF1 AC016831.7 NCK2 PRKCH BCL2 STAT1 ANKRD44 LEF1 RORA-AS1 TBL1XR1 MAML2 UBAC2 TIAM1 STIM1 SERINC5 LPP ETS1 ITPR1 LINC00598 TNFAIP8 ARHGAP26 VMP1 KLF9 INPP4B HIVEP2 ELF1 PNKD STIM2 AC068896.1 PVT1 LBH LINC01588 TRABD2A RUNX1 SMG6 PIP4K2A CD247 LDLRAD4 PITPNC1 STT3B CCDC88C ITK OXNAD1 CDC42SE2 TBC1D5 CD2 LINC01004 ARHGAP15 IMMP2L TMEM131L FAM117B RORA ANP32A RASGEF1B CAMK2D ST6GAL1 CCR7 PRRC2B RASSF3 KDM4C NELL2 ABLIM1 EVL ABHD15-AS1 ZBTB38 KLF13 BACH2 DOCK9 ZNF438 CDS1 NPAT PSMA1 MCF2L2 CD96 FNBP1 CLDN15 TGFBR3 ARSG JMJD1C HDAC4 GNG2 AC009126.1 TRAJ28 PDE4D DRAIC SORL1 PTPRC SPTBN1 PLAC8 RAI1 CDC14A PBX4 P2RY8 C9ORF72 RIPOR2\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Naive CD8+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: IKZF1 FOXP1 ITPKB HIVEP2 UBAC2 SEPT9 LEF1 TNRC6B IMMP2L MAML2 AC016831.7 CXCR4 RAD51B PRKCQ IKZF3 RUNX1 SYNE2 PRKCH ARHGAP26 DNMT3A PIP4K2A HDAC4 CYTIP TSPOAP1 SERINC5 ELOVL6 NRL UXS1 SPTBN1 LINC00598 DSE TGFBR2 RUNX3 LINC01135 RIN3 PTPRC RORA-AS1 TSC22D1 MED13L MXI1 SHQ1 CD247 RPTOR CASP8 PPP3CA TBC1D5 FYN BCL6 MAP3K3 AK2 BCOR LINC00649 NDUFV2 TRAJ28 MIR29B2CHG TG TRMO LCP1 ITGA6 SPON1 PPM1B SAE1 STK17B ADK AL928654.3 AP000311.1 AL392023.2 MCM7 ELF1 HOMEZ PARP16 COL4A2 BACH1 AC068896.1 MAML3 TRABD2A IDI1 AL023755.1 DGKD CROCC TNFAIP8 BACH2 AC010894.3 ARHGAP25 ABCD2 ANKRD44 CAMK4 UBE2H GATAD2A CHD1 RAB27A MBP NOL4L KLF13 PDE8A TPRG1 ELMO2 ATM CD6 ZC3H4\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Naive CD8+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 KLF13 FKBP5 NCK2 CCDC88C TGFBR2 MAML2 BACH2 DGKD NLRC5 LINC00598 RUNX1 AKAP13 ANKRD44 BCL11B CCR7 KLF12 LINC01588 TCF7 PPP2R5C CARS2 MACF1 SCML4 LINC00426 RBMS1 LINC01126 TSPOAP1 ATXN1 IKZF1 HDAC4 BCL2 ST3GAL1 ARHGEF3 LINC01934 MAML3 PKIG RIPOR2 RCSD1 CELF2 ARHGDIB NOSIP CRYBG1 LDLRAD4 SIN3A LEF1 PATL2 PPP1CA RPTOR SEPT9 TNFAIP8 RNF38 TG TBC1D5 ACTN1 TSPAN14 MSI2 FAM117B PCAT1 RIN3 GASAL1 FAM49B RAD51B AL512380.2 PXYLP1 ARID1B UBAC2 IMMP2L PLCL2 GLS MAP3K12 IQGAP2 FLI1 TNIP3 ID2-AS1 MCCC2 AC016831.7 SELPLG ARID4B CDH23 NEK7 ZBTB25 GRK2 IFNG-AS1 NEMP1 DNAH2 IRF2 LPXN ANKRD11 CBLB DUSP16 CERS6 RAPGEF1 CD247 FYB1 ITK TOM1L2 BICDL1 USF3 TRANK1 CYTIP\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Naive CD8+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PRKCH FOXP1 RAD51B RIPOR2 ANKRD11 TSPOAP1 PRKCB KLF13 DOCK10 RUNX1 BCL2 STK10 SEPT9 LBH PITPNC1 RIN3 SYNJ2 IQSEC1 BCL9L LINC01588 RMI2 AC008764.1 TBC1D5 ALOX12-AS1 FAM107B CCDC88C ST3GAL1 TRABD2A VOPP1 LFNG MSI2 CYTH1 AP001107.3 ABLIM1 AKNA TNRC6B PDE4D UXS1 BCL11B TNFAIP8 HDAC4 CBLB LDLRAD4 BTBD11 AC008014.1 HIPK2 FAM117B CDKN1B STIM1 NUMA1 DGLUCY IFFO2 PHF19 SUSD6 TAF1D CMTM7 FAM49B DIS3L2 ARRDC2 KIF2A GSE1 GPR137 RNF44 MED12L CARD11 CHFR NDUFV2 KLF9 SH2D3C PHF12 ANKMY1 NCK2 ARID1B IKZF3 ZBTB2 RPS6KA2 ZFYVE28 BACH2 HIVEP3 SKI STK40 GSK3B RUNX3 MDS2 NOL4L CDH23 GRK6 TBL1XR1 GPR157 AL359736.1 SERTAD2 AC002401.1 HNRNPA2B1 ABTB2 MAST4 TCF7 BNIP3L CDC42SE2 CROCC AC005775.1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Naive CD8+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 ANKRD44 IKZF1 CMTM7 LEF1 ST3GAL1 SEPT9 AL359736.1 HNRNPUL2-BSCL2 BACH2 PITPNC1 STK10 PRRC2B HIPK2 LINC00598 PRKCH PTPRC CD82 TBC1D5 ANKMY1 RHOH TNFAIP8 AC068896.1 MAML2 SEC31A RHOF PFKFB3 SBF1 ADAMTSL4 IKZF3 BCL11B CDC42SE2 LINC00861 PLEC XPO6 ZNF131 DOCK9 CARS2 TAF15 LINC01126 CYTIP AC016831.7 SORL1 SNRK HDAC4 IFT140 C1ORF112 ELMO1 SERINC5 FLI1 CASC11 AC005775.1 CD247 B3GALNT2 AKNA ZNF609 RIN3 KAT6B ITPKB AP001107.3 PRKAG2 SNX9 FKBP5 ETS1 DUS2 PDE4D HMGB1 NDUFV2 UXS1 AC010894.3 KLF13 ATXN7 STK4 FAM117A TMC6 ZFP36L1 HINT1 RFX2 MBOAT7 P2RY8 RAD51B BCL9L FHIT ZC3HAV1 IMMP2L TNRC6B ITPK1 TIAM1 PC BICRAL PPFIBP1 PNPLA8 TRABD2A DLEU2 MAMSTR DGKD DAZAP2 DNAJB12 PTK2B TRAJ28\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Naive CD8+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: IKZF1 TBC1D5 FOXP1 RPTOR SIN3A CSGALNACT1 TRABD2A AP001107.3 TNFAIP8 RUNX1 ITPKB STIM1 TLE4 DNAH2 PDE4B ANKRD44 TCF7 FHIT PLEC HOOK2 FAM107B MGAT5 MAML2 UMAD1 PATL2 DNAJB12 MBP ST6GALNAC3 AC010894.3 LIPA SMG6 MBOAT7 RHOH CIC RGS10 ABLIM1 KLF13 FAM117A MIR3681HG FOXN3 SCML4 CDC42SE2 P2RY8 SERINC5 SEPT9 CROCC BCL2 EPB41L5 RIPOR2 LDLRAD4 ZNRF2 SEMA4D KAT6B BCAR3 PRKCB CCNH HNRNPC RAB43 DNAH6 PRKAG2 LINC01004 SDR42E2 TRAPPC9 PIK3R1 BACH2 FAM49B ITK ZMYM2 TLDC1 CHST11 AC073342.1 TBL1XR1 AC016831.7 DOCK9 PARD3B SRGAP3 PLCL2 OXNAD1 ACLY UMODL1 ALG2 LINC01588 CNPY3 MRPL33 FAM69A PRKCA NDUFV2 AKAP13 CDK13 PNPLA8 RNF38 TTC33 SUPT3H PTPRJ AP000787.1 RBMS1 PVT1 ERCC1 SOD2 RUBCN\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Naive CD8+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SEPT9 CAMK1D ST6GAL1 NEAT1 SEMA4D COA1 NOL4L CARS2 FAM117A CEMIP2 TGFBR2 UBASH3B LINC00861 SLC35A2 RPTOR CYTH1 RIN3 PLEC SYNE2 FOXO1 LINC01934 TSHZ2 FGD3 PPM1B CCDC88C TSPAN14 ARID3B C1ORF112 NFKB1 RUNX1 TMEM123 TCF7 STAG2 SERINC5 PARD3B AUTS2 LINC01126 WBP11 AC096920.1 RAC2 CMTM7 ZFP36L1 LINC01135 ID2-AS1 ABLIM1 CYTIP FGD5-AS1 CRTC3 STK17B TIAM1 GNAI2 KCNJ12 ISG20 ATP2B4 SH3RF3 AC084200.1 PTPRK CEP85 ELMO1 MARK2 TTC33 SPTBN1 ZNRF2 DESI2 MAP4K4 BCL9L IKZF3 HMGB1 OTUD5 AC145422.1 ARHGEF2 HACL1 B3GNT2 AL359736.1 MPP7 RUFY1 PIM1 TG JADE2 CDH23 RORA ETS1 PGK1 SEC22C SDHAF1 C1GALT1 HBS1L CCDC25 LRRFIP1 HAVCR2 GNAQ FBXL17 IVNS1ABP AC008691.1 ZBTB32 METTL13 NEMP1 GRK5 AEBP2 MIAT\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Naive CD8+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 BACH2 UBAC2 SEPT9 IKZF1 RUNX1 IMMP2L ARHGDIB OXNAD1 ITK LIPA AC068896.1 PVT1 ARHGEF3 LBH AC024592.3 ARID1B BCL2 RHOH TIAM1 PRKCH AOAH CABIN1 CELF2 PRKAR2B ATG16L1 UTRN SH3GLB1 BIRC2 WASHC3 CDC14A AL451062.3 LEF1 KLF13 PTPRE RPL24 LINC01004 BRF1 KAT2B PTPRC TRAF3IP3 SNRK NXPE3 CCND3 HIPK2 RPS6KA2 RAD51B SKI AL160408.2 SOS1 GRAP2 LCP1 VPS26C LINC01003 TBC1D14 EPS15L1 ARHGAP25 ARL4C CARS2 TCF7 LINC00861 ST3GAL1 CAMK2D PLCL2 KCNJ10 MYH9 SMARCA2 ESYT2 SNX9 AL390957.1 C15ORF53 SLC46A3 MAP3K3 TGFBR2 GSK3B RASSF3 SNTB1 FAM13A ITPKB AC010894.3 MEGF9 TTC33 LINC02520 MBOAT7 NUP37 AHR NFKB1 RASA2 SERINC5 AC008124.1 SLC16A7 ELF1 MGAT5 STK17B GOLGA4 TSTD2 HSPA5 PPP2R5C SESTD1 HMBOX1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Naive CD8+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: CHD4 PRTFDC1 RIN3 AL359736.1 PCAT1 MAML2 LINC01358 NELL2 ST6GAL1 PNPLA8 AC009185.1 IPMK EPHA4 ALPK2 DNM3 JAK2 ATG12 SMAD2 CD48 KIF2A NDUFV2 XKR6 NCOA3 PLCD1 AP000311.1 KIAA1257 FAM107B CYTIP AC016831.7 CYB561 LYST ELOVL6 LRCH1 RAB1A NSUN6 TNIP3 OPRM1 ATP8A2 LMNA VPS36 NFATC2 USP12 KLF12 TPK1 LEPROT RB1 SIVA1 AC069368.1 SMPD4 DCAF5 CUBN SNX29 SF3B5 ABCG1 CSGALNACT1 AC009313.1 DLGAP1 LINC01215 KCTD6 SOD2 CDC14A NDC1 ZDHHC17 POU2F1 AP005482.1 ARHGEF4 ATP5MC2 FYB1 MARCH2 MBD1 CARS2 TMEM243 ANKS1A GSK3A VGLL4 ALS2 MEN1 NRIP1 CD247 MEX3C AC243547.3 ZNF516 RALBP1 ISOC2 STK24 MTPN AC011362.1 SERINC5 PHF21A SLC30A5 SPTY2D1 HOOK2 PDCD10 TESC TNFSF4 ABRACL ZHX3 LINC01808 RHPN1 PTPRJ\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Naive CD8+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: UBAC2 BCL2 AL355916.3 PITPNC1 MXD4 IGF1R ATF3 OXSR1 RAPGEF6 AKNA ZNF444 MARCH6 MAP3K3 ZFR TCF7 ZSWIM8 DOCK9 TMSB4X IKZF3 TGFBR2 RORA-AS1 AC092718.8 SPAG1 AFF1 PTK2B PHF21A SERINC5 FAM107B SUSD3 ANKRD11 LEPROTL1 STRIP1 SSBP3 SP3 C6ORF99 AC079594.2 FOXN3 JMJD1C ZNRF2 IFT57 SNX6 GNG2 SMAP2 CIPC KLHL21 NDRG4 DNAJC9 CXORF40B HNRNPR CLU ASAP1 CCDC69 AP1B1 TNFAIP8 EML6 ARL15 ZC3H6 PPP3CC SESN1 TMEM263 DTNB C1ORF194 TEX46 SFMBT2 RRS1-AS1 BPGM ATP7B MCAM STRBP CBLL1 COX20 L2HGDH RPS29 CA5A LEF1 IMMP2L AC022113.1 TRIM8 DENND6B SEL1L AC097534.1 GVQW2 KIAA0895 NDUFS1 ALKBH7 CD209 ITPKB SPTLC2 CXCR4 PXYLP1 ST3GAL2 FBXO33 JADE2 HADH ALG10B CXADR AL049844.1 NRL SYCE3 AL162311.3\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Naive CD8+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SORL1 STIM1 FOXP1 KLF13 BCL2 RUNX1 MAML3 ANTXR2 LEF1 HIVEP2 CRYBG1 CD44 GSE1 PIK3C2A ARHGEF3 RPTOR TSPOAP1 SGMS1 MAP3K3 GRK5 DNAH2 FHIT CELF2 TIAM1 RAP1A FKBP5 EGR1 CARS2 C1GALT1 SMARCA2 DISP2 ZHX1-C8ORF76 CRTAM RMND1 SOX6 ZBTB11 MACF1 LINC01871 ACIN1 LIG4 UBAC2 ARID1B AL139383.1 ETS1 CHI3L2 BACH2 GBE1 ANP32A AKNA FAM129A BCOR ZFP36L1 SLC38A1 PRKCH BCL11B UXS1 AC008629.1 ITK PBX1 UBASH3B PRPF8 STK17B LSM14B PAQR8 ARHGEF6 CASP8 CD6 CACUL1 VCL PVT1 GPR61 EGR2 G3BP2 ALDH6A1 ARL14EP LDLRAD4 CD8B NOL4L CAT CCNG2 ZNRF1 AC008695.1 LONRF3 RTN4 TMEM123 NBN AC079385.1 CEMIP2 UTRN AC096564.1 EHF AL592071.1 TSKS PCDH9 ORC4 VPS35L NREP AC079313.2 MAP4K4 XYLT1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Naive CD8+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RUNX1 BACH2 ABLIM1 LEF1 FOXP1 HIVEP2 CMTM7 YWHAZ TGFBR2 SERTAD2 HDAC4 ACOXL CD47 IKZF1 UBAC2 C1ORF112 ARPC5 AL445248.1 CLEC2D TRAJ28 LINC00426 MTUS1 DOCK10 EPS15L1 G3BP2 TRABD2A OTUD5 GMFB ELMSAN1 OPN3 RIPOR1 EGR1 UMAD1 LCP2 ANXA6 KLF7 RASGEF1B GSK3B PCAT1 SERINC5 LINC01934 AL049629.1 MAML2 LSM4 CDC42SE2 AC005041.1 SEC31B LIPE-AS1 LINC01588 TESK1 TBC1D4 HDAC7 ITPKB PNPLA8 SLC38A2 CEMIP2 ARID1B WDR89 MATN1 AL390957.1 NFXL1 OSBPL3 EIF5A ATP6V1E2 AC109492.1 CBLB PIK3R1 AC068896.1 CMTM3 GOLGA3 GYPC INPP4B RABEP2 AL160408.2 HMGN1 NCK2 SEH1L BPGM STRIP1 NSD1 GATAD2A PRKAR1B RGS10 LINC00598 ATG16L1 TMEM243 RAI1 SPEF2 L3MBTL1 RAB26 GTPBP6 AC027682.4 ARID5B CDH23 SYTL3 MICAL2 RASSF3 AHCYL2 TAF3 AC010894.3\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Naive CD8+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 HIVEP2 ST3GAL1 TBC1D5 LEF1 TCF7 KLF13 HDAC4 TRAJ28 IKZF1 LINC00598 SERTAD2 RUNX1 CSGALNACT1 MBNL1 BACH2 TRABD2A SPTBN1 AUTS2 TNFAIP8 SERINC5 PIP4K2A ANKRD44 ARHGAP26 UMAD1 XPO1 AC010894.3 PDE4D CYTIP OXNAD1 ANKRD55 LBH STIM1 HNRNPA2B1 TIAM1 ARID5B TNRC6B CCR7 TMEM123 ITPKB BTN3A2 PRKCH RPS6KA2 AKAP7 ETS1 ACTN1 SIL1 ST6GAL1 HBS1L RHOH C15ORF53 MIR3681HG UBAC2 FHIT MAML2 VAV3 CAMK4 MBP AL591885.1 THEGL NEMP1 LINC00426 PNKP TSPOAP1 ATXN7 AC011481.2 DNMT3A HECW2 AP001107.3 CHFR LPXN TSPAN14 SLC11A1 ARMH4 MAN2A1 LCP2 CIC ADGRG6 PXYLP1 ARID1B PLEC KAT2B LINC01588 B3GNT2 BACH1 NXPE3 BICRAL ZSWIM6 AOAH TPRG1 CRTC3-AS1 AC009185.1 AL138720.1 MFSD8 AL390957.1 SORL1 RASSF3 PJA2 EEPD1 SOD2\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Naive CD8+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: BCL11B KLF13 FOXP1 DOCK10 RFX3 PPP2R5C HOOK2 BACH2 AC016831.7 MIR3681HG PAG1 LINC00598 TLN1 RAD51B IKZF1 ARID5B PTPRC IMMP2L XPO1 UBAC2 TBC1D5 OXNAD1 MBNL1 ANKRD44 DST CDH23 AL359736.1 ZBTB20 HIVEP2 AL163932.1 AC079594.2 PXYLP1 HDGF SEPT9 ST6GALNAC3 CCNG2 ST6GAL1 CSGALNACT1 LRCH1 PLCL2 RBMS1 AC097713.1 MXI1 ATP10A SEC22C PPM1B MAP3K3 CDCA4 GIMAP1-GIMAP5 KPNA4 TOP2B UBA3 RASSF3 PAQR8 ELOVL6 ABCB9 RMDN1 CCR7 ST8SIA1 SERTAD2 LINC01135 FOXN3 KCTD21 TRANK1 AC007163.1 ITGA6 HDAC4 PLCD1 RPS6KA2 PDE4D FLNA IL7R DBP RASGEF1B BACH1 SH3BP5 AC008875.1 KLHL29 FGF9 MTMR12 RARA NR4A1 LSM4 ATXN7 PIK3IP1 AC010894.3 PRKCH PRIM2 AC020743.2 WNK1 SPTBN1 THEMIS FGD3 KCNN3 BTBD11 MLLT3 SF3B6 CTNNBIP1 TSPYL2 TNRC6B\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Naive CD8+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 PRKCH RIPOR2 MAML2 PATL2 ITPKB LEF1 BACH2 TGFBR2 CD8A TCF7 ANKRD44 AC016831.7 BCL2 DDX17 ZNF846 ZFP36L1 SCML4 CDH23 SERINC5 TRIM66 SEC31A ARHGEF3 ZBTB16 RHOH AC007040.2 CIC SORL1 RIN3 CCND3 DPP4 PRKCB CBLB PITPNC1 AC010271.1 KLF9 TGIF1 AC096920.1 SIN3A DNAH2 ZBTB20 POU2F1 BCL11B ZC3H3 SNTB1 SEMA4D SLAIN1 CAPG NAP1L1 ETS1 ELOVL5 MIAT TTC33 NR3C1 MATN1 FARS2 ABCB9 POLR3D FBXW4 RREB1 CCDC12 LEPROTL1 FLI1 LINC01004 TBC1D10B ATXN7L1 NUDT22 AC069368.1 ZBTB7B AC009126.1 ATXN1 PAQR8 FAM184A RNGTT CSK MTR AL357060.1 RAD51B HDAC4 NLRC5 BIRC3 IMMP2L LINC01366 ASF1B FOXN3 ZDHHC14 MCM3 SOCS5 UFC1 H3F3B FBLN7 RFX1 LDLRAD4 CAMK1D CARS2 PPP3CC PTPRC KLF13 AK5 HIVEP2\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Naive CD8+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PRKCH PIP4K2A FOXP1 KLF13 RUNX1 LPP PITPNC1 SEMA4D TNFAIP8 ARHGAP25 AKAP13 HIVEP3 MAML2 BCL11B FAM19A2 CPOX FAM107B LEF1 GSK3B PATL2 GRK5 DNMT3A RBMS1 SLC38A1 PXYLP1 SPTBN1 ZFP36L1 MBP CCND3 AC016831.7 SERINC5 SEPT9 RERE ANKRD44 ARID5B AKNA NEAT1 FAM117B STIM1 GSE1 ARHGAP15 AGO2 DEAF1 RHOH LINC00598 NDUFV2 APBB1IP PLCL2 SLC35A2 KSR1 ENSA GLS IKZF1 TBC1D5 KLF7 RIN3 SEC22C TNRC6B CDC14A LMO4 AL138752.2 ZBTB16 TCF20 ASAP1 PLCL1 ARAP1 TIAM1 SFR1 PPM1L MCCC2 THRAP3 FYB1 TSPOAP1 MGAT5 DDX3X CDH23 GPR150 C15ORF53 STAG1 CBLB NCR2 DRAIC HNRNPUL1 MICAL1 PPM1B OGDH CELF2 SEPT7-AS1 APOLD1 FKBP15 PDE4B IGF1R MOV10 TOX2 PIK3R1 CCDC88C LINC01934 TPRG1 TG RNF38\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Naive CD8+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: HIVEP2 FAM117A CYTIP KLF13 TGFBR2 BCL11B IMMP2L FOXP1 TG RNF4 TSPOAP1 AL359736.1 TMEM131L SEPT9 ITPKB PTPRC ANP32A AC068896.1 PATL2 ELF1 HECW2 STAT1 PRKCH FYB1 TBC1D1 KLF9 STK17B PPP2R5C LINC01934 RASSF3 MBNL1 NKIRAS1 MBP GRAP2 RFTN1 IKZF1 FYN ATOX1 HNRNPU LINC01588 TIAM1 ME2 TFPT MLLT3 UTRN RBM8A INPP5A OGA INTS13 RHOBTB3 AL162377.3 ETS1 LIPA TRABD2A RFX3 ORMDL3 RBMS1 BACH2 PLCL2 PHF20 RELL1 LINC00598 AC058822.1 MPHOSPH9 SLC25A12 TSC22D1 AC009779.5 FNBP4 ITGA2 IFRD1 AL355315.1 EVL NFATC2 TCF4 AHR NIT2 EVI5 PPP2R2D DEF6 KIFC1 ELMOD2 TPM3 GPRIN3 SOS1 AC093010.2 LIN54 PDE7A DET1 MDC1 FKBP5 CARS2 RMND1 FHIT ULK4 PHF12 CCDC91 FOXO1 DCAKD SBF2-AS1 IL16\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Naive CD8+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: TNFAIP8 FOXP1 LINC01588 TRABD2A MIR3681HG ARHGAP25 ITPKB RIN3 PREX1 HDAC7 ACOXL IGF1R NELL2 XPO1 IKZF3 LAMA3 SPAG8 SEPT9 LEF1 PRKCH MLLT10 AC010894.3 MAN1C1 PDE4B CLEC2D PIP4K2A SERTAD2 CCR7 C1ORF112 INO80B NUDCD2 NR3C2 EVL TSPOAP1 XYLT1 ADK STIM1 ST3GAL1 NEAT1 LINC01004 GRK6 DOCK9 RORA-AS1 LCORL AC016831.7 LINC01629 CCDC88C TRAJ28 AC024592.3 CAMK1D AL136962.1 PHYH ITK SAMD13 ANXA6 PTPRC ACTN1 STK17B CBLB AP000787.1 ESYT2 PPP1R16B GRAP2 AL138752.2 LINC01135 ANKRD44 HDAC4 LRBA INTS9 RAD52 YME1L1 CARS2 PATL2 ST8SIA4 ELMO1 OSBP AC011773.4 AMPD3 AC009185.1 RAP1A PRR14L KIF2A G3BP2 FAM160A2 ITPR1 ARID1B AMN1 FAM107B CDYL P2RY8 ZNF33A B4GALT1 EBF4 BCAR3 CDK13 CELF2 AC068896.1 JARID2 TBC1D14 PITPNC1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Naive CD8+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ELMSAN1 RNF216 FOXP1 BACH2 NCK2 HDAC4 RIPOR2 NELL2 TRABD2A NFE2L2 TBC1D5 ANKRD44 CCDC88C TNFAIP8 ST6GAL1 ACOXL LINC01588 CELF2 ARHGEF7 RASA2 CCR7 TNRC6B KLF12 AL355076.2 TCF7 RBMS1 MAT2B RUNX1 ETS1 PLCL1 ADAMTSL4 APBB1IP SSX2IP C3ORF58 PREX1 SEMA4D RAP2A PLEC PIK3R1 RASGEF1B PTPRC MGAT4A EPB41L5 GRIP1 IGF1R CAMK1D ZNF608 GRAP2 LRRC8C-DT ZNF831 AFF1 PRKACB AC099063.1 RREB1 SOD2 TRAF1 STK17B CASP8 RORA-AS1 LIPA LINC02416 LINC02446 PRDM2 GNAQ ZNF131 AC009126.1 RGS3 P2RY8 KCNJ10 PRKAG2 LBH RIN3 C16ORF72 LIN54 AC007728.2 UVSSA GATA3 RHOBTB3 PYM1 ABHD12 KLC2 PDCL3 ZNF414 LRRFIP1 EXOC2 KAT6B ARL14EP LINC01934 CD6 AP001972.1 RNF166 IQSEC1 PXYLP1 SBF2-AS1 RUFY3 TRERF1 MPRIP FHIT NFIA SLC6A6\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Naive CD8+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 LINC01004 HDAC4 RUNX1 LEF1 AC009126.1 AL359736.1 FOXN3 KIF2A PVT1 FYN TTC33 GRK6 LINC01588 C1ORF112 CDC42SE2 RIPOR2 ATP8A1 KLF13 ZBTB16 ST3GAL1 HIVEP3 PPP1R2 CARS2 DUS2 PLEC PLCL2 ANKMY1 RABL3 ZNF516 PRKRIP1 JARID2 EGR1 ITPR1 RPS6KA2 GRAP2 COA1 ARMH4 TIAM1 HIVEP2 TNFAIP8 PIP4K2A RERE ZNRF1 CDH23 ELOVL5 AKAP7 TOP1MT PPM1B ZCCHC2 RASSF3 IMMP2L MAD1L1 TRAF3IP3 ITK PATL2 BCL9 PRKCH LINC00649 NOSIP AC093010.2 SAMSN1 XYLT1 CROCC SMPD3 DRAIC SEMA4D AC004922.1 AC092803.2 AL133523.1 CSGALNACT1 STK10 TECR MSL2 RHOF UBXN11 KIAA2026 CCND3 IQGAP2 CFAP299 VIPR1 SCML4 IRAK2 RASA2 GGCT UXS1 AF241726.2 TOX2 MTMR4 PHF12 PPP1CA TIPARP PACS1 CASP8 TBPL1 RELA CD8A ATP6V0A4 TRIM9 RAPGEF3\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Naive CD8+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PRKCH TRAJ28 UBAC2 PTPRC LCP2 FOXP1 CCDC88C CCND3 ITPKB AC009126.1 RASSF5 NDRG1 PAG1 RASA2 TBL1XR1 TNIK AKAP13 ARHGAP26 TNFAIP8 ZBTB8OS BCAR3 SERINC5 KLF13 ZFYVE28 RIPOR2 MIR3142HG GRK5 LINC01588 RAB27A ASAP1 SAMD3 FAM49B ARHGEF3 LDLRAD4 PTPRJ TGFBR2 TCF7 CPOX C6ORF99 ASCC2 NAA50 CACUL1 LINC01126 FBXW7 MXI1 CBLB NME7 ZSWIM6 AC025682.1 CELF2 EVI5 IFNAR1 CEMIP2 STK10 FYB1 HBS1L PTPN6 HIVEP2 NCK2 TBC1D2B PRKCB CROCC ARMH4 CSGALNACT1 THEMIS PNKP ETV6 NFIA ANKRD44 DRAIC GTPBP8 BTBD19 CIC ANKMY1 GTF2I SEMA4D PLEKHF1 AC007285.1 ELMSAN1 RASA3 VAMP1 AGPAT3 AC004596.1 PDE4B TRABD2A HDAC4 ELF1 LINC01135 PJA2 ACTB ARHGAP15 AC020911.2 TRIM8 ARHGAP45 PTAFR TTC39C CASP8 TSPOAP1 CAPZB SH3KBP1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Naive CD8+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 CHD1 LTA TNRC6B APBB1IP IMMP2L AL359736.1 ARHGDIB CCDC88C PFKM GCA TEX2 GSK3A SUPT3H SEMA4D C3ORF58 IKZF3 MGAT5 DIAPH1 RNF181 NCOA2 SLC12A9 INPP4B MAPRE2 MRPL33 RUNX3 SRGAP3 STK10 FLVCR2 PRKCB ARPC4-TTLL3 BCOR PRKCQ KLF13 INPP5F NCK1-DT ZNF644 MAP4K4 RASA3 KIAA1211L RSBN1 SNRK HERPUD1 AC078923.1 RANBP10 EED LHFPL1 NOS3 SERF2 WISP1 MKL1 PATL2 SZRD1 LEF1 HIST1H2BC CLK1 ELF2 RYK PTMA ZBTB20 AL132671.2 HTT-AS RUNX2 NUBP1 GALNT2 MGST3 ATP6V1E2 CALD1 INIP YARS PRKCH AC020911.2 IKZF1 SERINC5 CBLB HK2 RAI1 POLR1C RHOBTB3 MAN1C1 ABR PDZD2 ICA1 TIAM1 PEX6 UTP6 ARID4B RASSF5 RPP38 PICALM LITAF UBE2D3 BRD7 CHD7 CENPL DENND4A YWHAZ SH2D3A HCG25 AC017083.3\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Naive CD8+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: LINC01934 LINC00598 IMMP2L BACH2 LEPROTL1 IKZF1 FYB1 PRKCH AKNA ARHGEF3 GSE1 CSGALNACT1 ACOXL TBC1D5 CELF2 LINC01588 MAML2 AKAP13 COA1 XKR6 RUNX1 AC016831.7 TNFAIP8 ADAMTSL4 UBAC2 DOCK10 AL359736.1 ARHGAP15 BCL2 LINC01135 FOXP1 TIAM1 RAD51B ZNF395 CGGBP1 NCK2 ZBTB7A BORCS5 STIM2 TTC7B GRPEL2-AS1 PSMA1 IQSEC1 ELF1 PCF11 STAT3 SERINC5 MBNL1 PRKCZ FYN KLF13 PTPRK TAF1 PTK2B TSPOAP1 ELMOD2 BIRC6 PHF19 LCP2 PDE4B ATP8A1 CDK17 AL392023.2 FNDC3A SUPT3H TNRC6B SLFN12L PTPRC DOCK4 ARHGAP26 USP4 TRERF1 PCAT1 GFOD1 ST3GAL1 DLEU2 AP001033.1 TBL1XR1 FAM192A BFSP1 ATP13A1 AC093010.2 NFIA PPP2R3B NRL COA7 AC009185.1 ZBTB14 FHIT PRR7 CCDC88C ATAD2 RNGTT RPS6KA2 PRR7-AS1 STRN CLTA SEMA4D INPP4A MCFD2\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Naive CD8+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RUNX1 RHOH FOXP1 ANKRD44 ARHGAP25 TIAM1 RBMS1 FYB1 BCL11B BCL2 TBC1D5 HDAC4 INPP4A UBAC2 ADAMTSL4 PRKCB BACH2 STIM2 AL359736.1 PRKAG2 AC016831.7 MGAT4A NLRC5 IKZF1 CDR2 AL451062.3 CCDC88C FOXN3 GATAD2A LINC00598 ELMO1 XYLT1 TMEM131L NIN PLEC MBOAT7 VPS13D EPC1 CHST11 ATXN7 CNOT1 MAML2 TRAPPC9 AHR NCK2 PRKCH CABIN1 OSBPL3 CAST TLDC1 CDC42SE2 ARHGEF7 ETS1 FBXL19 KLF9 LSP1 GLS SCML4 MIR29B2CHG LEF1 AKNA TSPAN14 PAG1 CIC PRADC1 LINC01588 RASA3 MACF1 RASSF3 PITPNC1 TRIO MALT1 RASSF5 AL138752.2 ST6GAL1 AC008629.1 ZC3H3 FYN DOK2 LINC02356 HOOK2 RAPGEF1 APBB1IP GSE1 STT3B MAPRE2 MTO1 ANXA6 SEPT9 PCSK5 EDEM1 TRANK1 TGFBR1 MIR181A1HG TSPAN5 FAM117B CROCC CBLB ATP2B1 CUBN\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Naive CD8+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 TIAM1 CYTIP DOCK10 PTPRC SFMBT2 RASSF3 ETS1 SEPT9 CCDC88C ANKRD44 CELF2 SMG6 NEMP1 PRKCH IGF1R TBC1D5 RUNX1 STIM1 STK24 UBAC2 LEF1 RNF216 LINC01336 BACH2 HBS1L DPP4 LINC00861 AC243547.3 TGFBR2 MGAT4A TM9SF2 PITPNC1 MPP7 TCF7 ITK CEP85L CD96 RUNX3 TG RASSF5 FLI1 AFF1 RIPOR2 JARID2 TRABD2A CAB39L CCND3 DEAF1 FOXO1 MYH9 MAMSTR CYTH1 ARHGDIB SOD2 EVL P2RY8 CCDC69 STK17B PIP4K2A PREX1 CD247 ZFP36 LINC00880 SPTBN1 ATXN1 DCAKD RGCC MSI2 CD82 IKZF3 BCL11B CIC STIM2 PPP1R18 AC012309.1 PATL2 GIMAP8 BCL9L UBASH3A KLF12 ST6GAL1 TMEM131L DCUN1D4 CAMK1D SEMA4D PVT1 NCK2 TNFAIP8 TSC22D1 MAML2 LPIN2 TRERF1 ST6GALNAC3 TOM1L2 NCOR2 ZNF808 ETV6 TTC33 GNG7\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Naive CD8+ T", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 STIM1 IMMP2L HIVEP2 PVT1 SEPT9 LEF1 MAML2 RHOH ABLIM1 STK17B ZC3HAV1 TGFBR2 HAVCR2 TG DOCK10 BACH2 AC016831.7 RASSF5 LPP RASSF3 DNM3 THEMIS TMEM263 PATL2 MICAL2 CD47 MPP7 ADAMTSL4 LINC01588 RNF216 STK24 GRB10 ETS1 DUSP10 INPP4B PRKCH CD8A ABHD15-AS1 BCL9L LINC01004 MTR TIAM1 TBC1D5 AL163932.1 APOBEC3A FBXW7 CITED2 PTK2B LPAR3 ARHGEF3 ARHGAP26 PDE7A CCDC88C KANSL1 MAST4 LRP1 PRKACB PXYLP1 PLXNA4 CAMK2D POLG ALOX12-AS1 TMEM131L LDB1 VOPP1 LIN54 HECW2 AC012184.1 SERINC5 DDX3X GFOD1 SUN2 ARHGDIB AC004922.1 LRRC8C-DT COL23A1 IFNG-AS1 NLN DMAC1 TNRC6B MDC1 USP3-AS1 MFHAS1 FHIT PDLIM2 REST PCED1B PRKCQ IGF2R CARS2 UBE2D2 CAMTA1 CAT UMAD1 SLC16A10 CALCOCO1 TPRG1 TNKS PSD4\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "Naive CD8+ T", "role": "assistant" } ]

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