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[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-CO3 CHN1 MT-CYB MT-CO2 CLU SYT1 CCK SPARCL1 MT-ND1 RAB6B RTN3 CALM3 MAP1B MT-ND2 RTN4 FAIM2 ENC1 GAPDH CALM1 MT-ND3 MTRNR2L12 PRNP BEX2 ATP2A2 MT-ND4 ATP6V1B2 TMSB4X VSTM2L TUBA1B TUBA1A DPYSL2 RBX1 NRGN MT-ATP6 OCIAD1 CA10 YWHAH GDI1 PKM NELL2 CNTN1 LMBRD2 FTH1 HSP90AA1 CARTPT VSNL1 RPL41 TSPYL1 COX7C MAPK1 DCLK1 HSP90AB1 NDUFA4 NEFL POLR2L BAG4 SMIM13 BEX1 CDKN2D FKBP1B GUK1 AURKAIP1 NPTXR BASP1 STMN2 SYT11 ITM2C MTRNR2L8 PPP2CB MTRNR2L1 ZFAND5 KLC1 DNAJC6 APLP1 RGS4 PSMA7 TOMM20 EIF1AX PPP2CA APP SNN ATP6AP2 ATP2B2 SYNJ1 RPL38 GLRA3 ELAVL2 FAM131B CAP2 CADM2 RHBDD2 CCDC85B CLIP2 CRYM SARAF GABARAPL1 PSAP CHL1 SIRPA KIF1A SYN1 SLC22A17 SYNPR CALM2 SNRPN SLC12A5 UCHL1 STMN3 CTSD DHCR24 NBL1 DYNLL1 PHPT1 RPL17-C18ORF32 ATP6AP1 NAPA SNAP25 PEBP1 ADORA1 SYN2 SUMO2 PSMC5 MDH2 CCT5 PPP3CA PCMT1 MMD NCDN SYT4 ATP5J2 ARHGDIG ATRN DNAJC5 CPE SNX10 PTPRN POMP SPOCK1 NRIP3 TCEAL2 DDN COX14 NPTN TXN NARS NHP2L1 GAD1 COX7A2L NDRG3 NEGR1 SYNPO TSC22D1 MDH1 LYNX1 SNCG PDP1 ITM2B CD63 SLC25A22 GAP43 APLP2 KRAS RP11-51O6.1 SLC6A17 LGI3 CLTC ATP6V1A SLC30A3 RAB3A DMTN NDUFB11 FXYD6 C11ORF31 TPT1 C1ORF52 VDAC3 FIS1 SLC17A6 PPP2R2C AP3S1 ATP5E TMEM155 SERINC1 NDUFA13 PTK2B UBE2N KCNAB2 PEX5L PPP3CB DIRAS2 GRIN1 BSG PITHD1 C2ORF80 ATP6V0B C2ORF74 YWHAG VEGFA RPS27A PCSK1 CACNG3 PRSS3 CDK5R1 OLFM1 DIRAS1 SLC39A10 C6ORF1 YWHAB PCSK1N PIN1 C1ORF115 TUBA4A TPPP SSTR1 NDUFV1 COA3 HMGCR THY1 MAP4 AP2B1 EFR3A RAB3C CADM3 HDLBP TMOD2 ZNF385D CABP1 ATP5J REEP5 SLC9A6 STXBP1 UQCR11 TUBB2A PHYHIP COX4I1 NAP1L2 SLC17A7 HOMER1 NDFIP2 SEZ6L2 BSCL2 PTCHD4 ENO1 PDE1C AHNAK2 CYCS ATP6V1G1 TMEM59L PNMA2 PPP1CB NGFRAP1 ATP1A1 CLIP3 SYNGR1 OPCML STMN1 HTR2A ACTG1 SRP9 CFL1 SERINC3 ATP6V1E1 ENO2 PTMA PSMD2 HMGCS1 KIF3C EIF4A2 SYT17 C16ORF13 GDA ARHGAP35 MRPL52 ARL6IP1 DYNC1I1 PAK1 DCTN3 TUBB4A HINT1 TALDO1 NELL1 CNIH3 COPG1 PRKCB OAZ1 NEFM RAB2A EDIL3 SPARC NDFIP1 TMSB10 CLSTN1 ATOX1 RHEB COX6C HPS6 MAPRE3 VDAC2 LANCL1 PRDX1 RP11-195F19.5 CDK5R2 GABRA5 MRFAP1 CAPZA2 NAPB MAPRE2 ATP5F1 ATP6V0D1 HTRA1 YDJC VGF SNCA SEPW1 UQCRQ PPIA ITFG1 RP11-111M22.2 PFN2 RP11-20I23.1 IFI27 MTRNR2L6 IDS NSF ATP6V0C ALDOA MIF\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "pyramidal neuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MT-CO1 MT-CO2 MT-ND4 MT-ND3 NRGN MT-ATP6 SYT1 SNAP25 MAP1B CHN1 MT-CYB THY1 CCK CALM2 ENC1 STMN2 ATP1B1 UCHL1 NEFL GAPDH ARL6IP1 TSC22D1 MT-ND2 GPM6A MTATP6P1 MTRNR2L1 NDRG4 SERINC1 CLTC PJA2 MT-ND1 RGS4 CPE GDI1 YWHAH STXBP1 TPI1 BASP1 RTN1 DPYSL2 FTH1 APLP2 CALM3 OCIAD1 PHYHIP PTK2B TOMM20 DMTN SEPW1 KLC1 MFSD6 PDP1 ARF3 CALM1 MAP1LC3B CPLX2 HSP90AA1 PSAP ATP6V0E2 ZBTB18 HSP90AB1 PEBP1 WBP2 CPLX1 STMN1 KIF1A NDFIP1 PPIA SLC17A7 SPARCL1 NECAB1 MTRNR2L12 CDK5R1 EIF1AX YWHAG NPTN ATP5I NAT8L OLFM1 TSPAN7 TUBB2A ITFG1 MTRNR2L6 SCAMP5 TPRG1L CLIP3 RAPGEF5 GOT1 AK5 ATP6V1A APBB1 AHNAK2 NEFM NCAM2 PGK1 TUBA1B RBX1 TUBA1A OPCML PIP4K2A PFN2 GABARAPL1 PLCB1 CD99L2 MDH1 PRNP CKB PINK1 PRKAR1B SMS DNAJC6 BNIP3 SNX3 RPL37A ANXA6 SNRPN VSNL1 MLLT11 GHITM ARPP19 GSK3A EPDR1 IMMP1L SPOCK1 PSD3 MORF4L1 ATP1A1 SRP14 ACOT7 GNAQ EIF4A2 PPP3CA KIFAP3 NFE2L1 INPP5F ATP2A2 NCEH1 WASF1 CADM2 TSPYL4 ENSA CHL1 APLP1 VPS35 SNCB PRKACB PPP2R4 MTRNR2L8 ACTG1 YWHAB VAMP2 STK39 ACTB PKM RTN4 SNCA AZIN1 ATP5B SLC39A10 IDS EPS15 PTPRN DDN GRIN1 PRKCB FAM163B CACNG3 CEND1 NPTX1 ELAVL4 RPS15 CLDND1 ENO2 SERPINF1 CNRIP1 PHYHIPL TOMM7 ADAM23 COX6B1 PPP2R2C DYNLL1 CHMP4B LINC00116 EFR3A PPP1CB CTBP1 IPCEF1 RCAN2 CHCHD2 MFGE8 CMAS COX6A1 OPA1 RAB11FIP5 ATP6V1C1 SERPINI1 HS6ST2 DDAH1 JUND HSPA8 CFL1 HSPB1 PET100 NAPB RP11-195F19.5 SKP1 HN1 AES TERF2IP NME1 FBXO2 KIF5A SYNGR3 DNAJC5 UBE2N ATP5J2 CCDC25 MAST3 NDUFB1 ARHGAP35 CABP1 RAB3C ELMO1 CERS6 PRKAR1A PTHLH PITHD1 AKAP12 ATP6V1B2 LGI3 MT-ND4L UBB SYNJ1 CLTB NARS SOD1 TUBB4B CDK5R2 SMYD2 AP2B1 NSF DKK3 NAP1L2 FKBP1A TBR1 MYL12B AP2M1 NDUFV1 PGAM1 ACLY RPL26 PTMA FSCN1 RASSF3 NUAK1 ARL8B GTF3A PNMA2 ONECUT2 GAP43 PPP2R1A PRDX2 SYNPR TBCB OLFM2 PREPL C1ORF233 RAB1A PPDPF GPR158 CACNB1 SYT13 COX6C TMEM70 POLR2K CAP2 IQSEC1 NEFH DNAJC21 PARM1 DCLK1 PPTC7 KLC2 NAP1L5 SIRPA BCAS2 MTPN ATP6V0B CYCS EGR1 PSMC5 FAM219A FAM96B CHGB FAM127A DHCR24 SLC9A6 PITPNA PEF1 C1ORF115 SNX10 KCNA2 UQCRH RABAC1 PEA15 BTBD10 RPL32 TOLLIP TAGLN3 APP LYNX1 NAP1L3 PCSK1 SLIT3 EDIL3 VGF DYNLL2 PCMT1 SULT4A1 SCN1A ATP2B2 HMGCS1 CDS1 COPG1 UBC TMSB10 TSPYL1 SYT4 PRDX3 AP2S1 GUK1 SPOCK3 LYSMD2 OAZ1 SLC30A3 PACSIN1 ALDOC DNAJA1 LAMTOR5 ETV1 CRIM1 SUMO2 PELI3 CNTN1 GBE1 TUBA4A DCTN1 DNM3 C11ORF96 GMFB OXR1 COX4I1 CLPTM1 PPIF TMEM230 RPS28 SCD5 MLF2 KIF21A NDUFA13 HOMER1 GSTT1 SNCG LINC00087 SCD SYT11 CLSTN1 S100A6 NDUFA5 NIPA1 C1ORF52 SCN1B NMNAT2 CAPZB IDH3A ADD2 KCTD12 GPX3 ATP5G3 UQCRFS1 WBP11 ATP6V1F PFKP TRIM37 NDFIP2 TKT ATP6AP2 SDCBP SERF2 CLEC2L FAM19A1 ARL6IP5 CAMK2N2 ATPAF1 BRK1 SUCLA2 NCDN ARF5 BSCL2 RNASEK-C17ORF49 MIF ATP6V1G2 RPL13A HNRNPA1P40 PLEKHD1 PCDHGA10 PCDHGA6 PCDHGA5\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "pyramidal neuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 CALM1 SYT1 CALM2 MT-CO3 MAP1B GAPDH TUBA1B MT-CO2 CHN1 SNAP25 MT-ND2 NRGN CCK FTH1 TMSB4X CLU VSNL1 MT-ND4 RTN4 NEFL CALM3 MT-CYB SEPW1 ARPP19 GPM6A SARAF RTN1 CKB EIF4A2 SPARCL1 NECAB1 MTRNR2L12 BEX1 ATP1B1 MT-ND1 ENC1 MTRNR2L1 VAMP2 RTN3 PRNP THY1 MT-ND3 DPYSL2 TUBB2A ARL6IP1 NGFRAP1 PPIA HSP90AA1 UCHL1 PREPL HSP90AB1 PEX5L PRKACB YWHAH DYNLL1 TSPAN7 NAPB OLFM1 CHL1 TOLLIP SNCG PPP3CA GPX4 KIF1A YWHAG MT-ATP6 PEBP1 ATP6V1B2 PHYHIP PNMA2 GAP43 YWHAZ CREG2 TOMM20 NELL2 ENO2 BASP1 SYT4 ATP1A1 APP PSD3 NDRG4 NDUFA13 ATP1A3 PGRMC1 MTPN SNCB CLSTN1 ACTG1 CPE TM2D3 RAB3A FTL UBE2V2 KLHDC3 SKP1 ATP6V0C RP11-20I23.1 ATP6V0E2 OXR1 ATP9A NCALD ATP6AP2 NUAK1 PDP1 MAP1LC3A RPL38 PPP2R1A OAZ1 GRIN1 MAPK1 MGST3 ENSA PRKAR1B SLC39A10 NAP1L2 ATP5B TMSB10 C14ORF132 OCIAD1 BEX4 EIF1AX SNX10 GPX3 SLC17A7 GABRA1 CNTN1 FAIM2 NDUFC2 TUBB4B SLC12A5 MLF2 HMP19 MTATP6P1 TAGLN3 SNCA TUBA1A RPL15 TMEM130 CDK5R1 GABARAPL2 HMGCR PTMA IDS TUBB3 PLD3 SYN1 ENO1 HAPLN4 CLTC RNF11 HINT1 ATP6V1F TMX4 D4S234E SERPINI1 MORF4L1 SNRPN KIF21A PRKCB STMN2 CEND1 TUBA4A PPP3CB KLC1 CFL1 GNAQ C14ORF2 EPDR1 RAB6B SLC30A3 PJA2 UQCRQ STXBP1 ITM2B DSTN PRKCE PIN1 HTR2A PRKAR1A NDUFS5 PFN2 LMO3 LMO4 BSG PIK3R1 SULT4A1 SERINC3 ATP6V1A COX7C TPD52 RAB7A ATP6V0D1 SCN3B BSN CYCS CERS6 REEP2 PKM GNB1 GUK1 SPOCK2 CLIP3 NAP1L3 ATP6V1E1 GRIN2A GDI1 UBC PACSIN1 RGS4 TPRG1L RPL13A MTRNR2L6 DIRAS2 YWHAB SUMO3 SPTBN1 ATP2A2 TPI1 SPOCK1 NEGR1 TUBB4A SCN2B VAPB IFI6 MBOAT7 ACTB TSC22D1 APLP1 SYT11 CAPZB PDE1C PLCB1 RPS28 LAMTOR5 AP2B1 GUCY1B3 DYNLRB1 ATP6V1C1 STMN3 RPL39 SERINC1 HS6ST3 SERF2 FAM127A GDA TCEB2 CAPNS1 TMEM160 SUMO1 DGUOK TMEM132D WASF1 ACLY TBCB MORF4L2 ATP2B2 MTRNR2L8 ITFG1 EXTL2 ARL8B RAB3C PTGDS PGAM1 PSAP FXYD6 NDUFB1 SUB1 PI4KA CAPZA2 FAM134A LMBRD2 SRP14 CABP1 ADSS ARF3 C6ORF1 ARF1 SOD1 COX8A GMFB NFE2L1 NDUFB4 DNAJC6 OXCT1 ATP5O SYNPR NPTN PPP2CA SERP2 BCAP31 KCNH5 NDFIP1 CDK14 PRKCG SLC6A17 NDUFA5 RPS15 MFSD6 ZBTB18 UQCRFS1 NEFM DMTN RNASEK-C17ORF49 AK5 CRYM UBA1 TSPYL1 BLOC1S1 SYNGR1 CTNND2 GHITM RPL3 SMAP2 THOC7 LPPR4 APOD VPS35 CHP1 CCT5 CTSD EIF1B RCAN2 RPS26 KCNK1 ARL8A KIFAP3 MSMO1 FAM163B NDUFB2 PTPRT PAK1 NPTX1 COX6A1 RHOB DCLK1 HEY1 SPCS2 SYT13 AZIN1 RPS2 LZTS1 PTPRN SCN1A SYNJ1 ATRN YWHAQ DHCR24 GABARAPL1 CX3CL1 NAA38 UBE2E3 FAM19A2 PSMC3 ATP5G1 SLC22A17 DNAJB6 UBE2QL1 ACOT7 ATXN10 PPP5D1 CCDC25 NPTXR C11ORF31 COPG1 C18ORF32 CYC1 OPN3 SLIT1 MRPS21 SLC25A6 PPP3R1 REEP5 RORB NME1 NDRG3 MANBAL PDE1A SYN2 CA11 ALDOA EIF1 NDUFA4 SPRYD3 STUB1 AURKAIP1 BSCL2 SV2B UQCRH TERF2IP SERPINE2 CDKN2D CAMK4 STMN1 NHP2 PCMT1 UROS HIGD1A RBX1 RRAGA TIMP2 GABRA5 EDF1 CADM2 NAPA NDUFB8 OPA1 SUCLA2 SCG2 RPL7 BEX2 PRDX5 DYNLT3 CRIP2 RABAC1 UQCR10 PPP1CB PET100 SMIM13 TMEM150C SRD5A1 IDH3A NDFIP2 PITHD1 CD99L2 UBL5 USP5 AP1S1 RPL35 WBSCR17 CAMKK2 CLTA AP2S1 USMG5 RHBDD2 ANXA7 MLLT11 JUND RAB11A MYL6B TESPA1 NCEH1 PPP2R4 CMAS SLC9A6 SCAMP5 C19ORF70 ISCA1 LINGO1 NDUFS6 RTN4R ATP5I NDUFB3 NDUFA8 RAB6A TRIM37 CBLN4 NRCAM PPP2R2B EDIL3 PVRL1 GADD45GIP1 SCOC APLP2 ARL6IP5 LDB2 MAP2K1 BRK1 FKBP8 CADPS2 TMEM59L CYFIP2 AES ALDOC MARCKS COX7B RPH3A MAPRE2 CTNNA2 ITM2C PRDX2 TPT1 HDLBP RLIM MAPK8IP2 UBB H2AFZ PCDH19 MRFAP1 DDN PNMAL2 RAP2A COX4I1 MAP7D2 BAD EPHB6 ELMO1 COL5A2 NDUFV1 ARHGDIA MDH1 RTBDN UBE2N ZNF365 PPP2R2C ISCU KIF3C FGF12 AP2M1 TOMM7 TENM3 MYL6 FIBP UQCR11 HCN1 CADM3 SNAP91 IGFBP5 NSF IPCEF1 RAB2A CMPK1 RPL13 BEX5 PIP4K2A C9ORF16 CHRDL1 RHEB RASL11B ID2 RXFP1 MPC2 ARHGDIG NCOA4 MTND2P28 TMEM230 NIPA1 CHGB SYT5 SDCBP CNTNAP5 SPDL1 ABHD8 NAT8L NDUFB7 SDF2L1 UHMK1 ATP5G2 ENOPH1 VSTM2A TMTC1 FSCN1 PHYHIPL FKBP1A MT-ND4L GPR68 RASGRF1 BEND5 EFR3A ACAT2 UBA52 REPS2 CAMK2D RSL24D1 IGFBP2 FJX1 VAMP1 BTNL9 TMEM151A ISG15 NBL1 PHPT1 VDAC2 RNF208 CST3 MAP1LC3B SYNPO CTBP1 CCDC184 KCNAB2 SLC7A1 TSPYL4 RPL26 GLO1 COX14 ETV1 RPL10A THSD7A COA3 LAMTOR2 ACTR10 PPP1R7 SGCD RPS3A PIP5K1B CITED2 SH3BGRL3 SCD5 PSMB5 DPP6 ATP5G3 CDH22 NDUFA12 NDUFAB1 SYNGR3 VGF RFK NUDT21 NOV TMEM158 ZFAND5 TRAPPC1 VDAC3 CPNE8 UBQLN2 GSKIP MRPS28 DPY30 MBP SCN1B SCN4B MT-ND5 IQSEC1 TPGS2 PFDN1 BRINP3 DNAJB9 GPR26 SERPINF1 SNX3 COX7A2L ESYT1 HOPX PPIF RRM2B SEZ6L2 NDUFB11 CDK17 PCYT2 BTBD1 ZMAT2 CNIH3 PCBP1 PTPRM TRPT1 HPRT1 LINC00087 RAPGEF5 HPCA CPLX1 SELT ERH CORO2B TRHDE AGA MT3 POLR2L RPS12 HBB LDHB KITLG ATP6AP1 NGRN LSM4 ASPDH ETS2 KCNA1 MRAS HK1 ANAPC11 B3GALT2 SELM KCNA2 ASAP1 PSMB7 GDE1 TMA7 PSMC1 LYSMD2 NEUROD6 DNAJA1 STK24 FAM131B PFN1 SEC61G KCNF1 DNAJC5 HN1 RPL23A MRPL52 STX1B IGFBP6 PFKP DYNC1I1 DIRAS3 FBXW11 TMEM141 PRDM8 DPY19L1 RASGRF2 ATP5F1 FBXO2 FXYD7 SPRN CTNNB1 HSPA8 ARPC4 NELL1 MTCH1 PRUNE2 AKAP12 LGI3 NDUFA2 GPCPD1 RPL18A CCDC115 EID1 NHP2L1 NXPH2 BAALC SLC25A22 PHB ACTR1A MAPRE3 HMGCS1 BNIP3 COX5A RPS27A GRPEL1 TPPP PARM1 RPS19BP1 JUNB VSTM2L YAF2 RAB11FIP5 MIF MAP2K2 EPB41L3 PGM2L1 NRSN2 MZT2B HNRNPH2 LIN7B HTRA1 PPA1 TOMM22 PMEPA1 PPDPF DYNLL2 DCTN1 NREP TMEM70 TMEM11 COL24A1 BAI2 RPS4X GDF10 CYB5R3 ANXA6 PCSK1N CAMK2G ARC MPP1 MAL2 MFN2 NSDHL TCEAL5 SIRPA EGR3 CSDE1 SNX17 GSTP1 GYG1 STMN4 RPS6 TMEM258 ATP6V0B FABP5 KIF5A CTU2 CCDC85B BANF1 DCTPP1 VWC2L LAMTOR1 LUZP2 COX5B CLIP2 PINK1 SLC24A2 SLC8A2 ABHD14A ETS1 COX6B1 TCEB1 EPHA6 CACNB1 ELAVL4 STK39 PELI3 S100A13 COX6C NRN1 TRMT112 MAP7D1 CCDC124 ARPC5L EIF5A2 MTX3 ATP2B4 POLR2I NCDN WSB2 SNRNP25 SUMO2 TEX2 DKK3 PCSK1 AP3S1 C1ORF56 UQCRB C1ORF115 LYNX1 DIRAS1 SOX4 TKT NRAS NCAM2 RAB5C RPL37A DNM3 UBE2M WBP2 FBXL16 MAP2K4 PSMD12 ARF5 MRPL51 SPARC ATP5C1 LINC00116 CBX6 FUNDC1 RPL41 COX7A2 OLA1 KRAS CYP1B1 BHLHE22 SPHKAP GPR6 ATP6V1G2 RPS10 GABARAP PSMB3 CFH PCDHA9 PCDHA10 PCDHAC1 PCDHA4 GTF2H2C_2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "pyramidal neuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-CO3 MT-CO2 MAP1B TUBA1B MT-ND4 CALM1 YWHAG ENC1 SYT1 CHN1 SNAP25 ATP2B2 WDR47 ATP1B1 NRGN MT-ND2 CALM2 OLFM1 ATP6V1C1 THY1 CALM3 RTN3 ATP1A1 SCAMP5 GPM6A PLCB1 MT-ND1 SNCB CCK CLSTN1 DCTN1 KLC1 COX4I1 FTH1 SNCA KCNAB2 PSD3 GAPDH PNMA2 CLU PJA2 ATP2A2 GRIN2A ATP1A3 CNR1 PEBP1 MFSD6 NAP1L2 RAB3C PSAP STXBP1 CD99L2 VSNL1 PRKCG BASP1 CKB NDUFB5 NPTXR ENO2 PIN1 HNRNPH2 TMSB10 SARAF PREPL MTRNR2L1 SLC9A6 MT-CYB NECAB1 SKP1 HMP19 CAMK4 RPS28 LMO4 TUBA4A OPA1 STMN2 TOLLIP SNRPN INA GRIN1 NGRN ITM2C EID1 PHYHIP CADM3 ATP9A TSPYL4 COX7C RPL12 NDRG4 ARHGAP35 AP2M1 SLC8A2 EGR3 TMEM132D CHMP4B PHYHIPL UQCR11 GUCY1B3 PAFAH1B2 PNMAL2 TSPAN7 PPP2R2C UQCRC1 VSTM2L CAMKK2 APP OPCML SUMO2 CDC42SE2 CYC1 PKM YWHAH MAPRE2 SPRYD3 PDP1 MIEN1 PEA15 ARL4C SPOCK2 CFL1 MAP1LC3A ATP6V0E2 PPIA NEFM KLC2 MET SYN2 GOLIM4 CHCHD2 GABARAPL2 CDK5R1 RAP1GDS1 PCSK1N PRKCB TM2D3 PRDM8 FXYD7 USMG5 PRNP UHMK1 ARL6IP1 NDUFB1 ARHGDIA ENSA SCN3B HOMER1 TPD52 C16ORF13 SYNPR EHD3 STMN4 EIF1 TRIM37 NGEF FBXL16 FTL UBE2V2 ATP5B SEPW1 PRKCE TPI1 GPX4 VDAC1 STMN1 DEXI MTX3 NDUFC2 NGB MPPED1 PFN2 MT-ATP6 SERINC1 PGAM1 OCIAD1 TOMM20 PPM1A CYFIP2 MAOB ATP5G1 RPS4X YWHAZ ARF3 SLC9A1 MT-ND5 FAM174A RPS3A TUSC2 HOPX SNAP91 NDUFA13 SPOCK1 TBCB SYT13 PGM2L1 COL5A2 HSPB1 GRM3 COX6A1 RPL15 CHL1 AES C14ORF2 MTPN SOD1 PCDH8 DYNLL1 RTN1 ARF5 UBE2D2 KCNC2 PRKAR1B GPCPD1 MYL12B CYB5R3 DUSP2 SUB1 SYNPO ATP6V0B EIF4G2 SCN2B UQCRB WASF1 BEX1 INPP5F MYL6B MTRNR2L12 SYNGR1 SIRPA PSMD2 AP3S1 RAD23B UBL5 PTPRN PRKAR1A CPLX1 SH3RF1 NGFRAP1 C1ORF233 RAP2A MAP1A FAM127A NDUFA1 NDN SLC39A10 PPP3CB ATP5E SH3GL2 TUBB2A JUND ETFB RGS4 NEFH NPTX1 NDFIP1 ROBO2 SERF2 CLTA RNF11 SUMO1 LDB2 NDUFB2 RPL36A C19ORF70 C14ORF132 GNB1 NCOA4 MORF4L1 TOMM34 GDI1 RAB6A GDA LINC01296 UCHL1 F8 BAG4 SERINC3 RPS6 CLTC ACTG1 NDUFB7 COX7A1 RAB6B FAT3 RTN4 CADM2 RHOB AZIN1 RFK CLSTN2 SLC25A6 GNAQ SCN1A ZBTB18 EPS15 UBE2QL1 MT-ND3 IDS NSF MTRNR2L6 TUBB3 ALDOA RPL41 TUBB PCDHGA10 PCDHGA6 PCDHGA5\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "pyramidal neuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-CO2 MT-ND2 MT-CO3 MT-ND4 MT-ATP6 MT-CYB CALM1 MT-ND3 MTATP6P1 MAP1B PSD3 PRKCB ENC1 MT-ND1 FTH1 SNAP25 CALM2 SYT1 APP CLU GPM6A THY1 MAP1A BASP1 CFL1 SERPINI1 RTN3 CHN1 WASF1 RTN4 SCN3B RGS4 DPYSL2 PKM CKB MTRNR2L1 VSNL1 NEFL TUBA1A ZNF365 NUAK1 MAP7D1 ATP1B1 YWHAZ PRNP SEZ6L2 HMP19 CALM3 TUBA1B RPL41 MTRNR2L12 RPL11 ATP2A2 YWHAG CNTN1 ZBTB18 ATP2B2 SLC39A10 ATP9A SLC22A17 HSPA8 NPTXR YWHAB CAP2 DYNLL2 GDI1 SCD5 STMN2 SPON2 TPRG1L CA11 GNB1 ROBO2 CCK PRKAR1B PPP3CA CDK5R1 CAMK4 CADM2 RASGRF1 RPL15 RPS15 SPTBN1 NRCAM UBE2V2 NEGR1 TMSB10 ATP5G3 CPE GDA MTRNR2L6 PNMA2 TM2D3 CCDC85B MPC2 PPIA PGM2L1 TMA7 TMEM258 UQCR11 HEY1 PEX5L IDS SPARCL1 RPL32 GAPDH PPP2R1A ATP1A3 SYNJ1 TPD52 APOD EPS15 PSAP PEA15 GPX4 FXYD6 OAZ1 HSP90AA1 HSP90AB1 NCAM2 FKBP8 PPP3CB GAP43 TLN2 MT-ND5 ITM2B SV2B STMN1 PSMC1 CREG2 SYT13 CD59 RAB2A NCALD TCEAL7 TMEM59L NPTN CAMKK2 GABRA1 COX6C MTCH1 TGOLN2 OLFM2 SLC6A17 APLP1 NAP1L2 SLC1A2 TUBB4A C14ORF2 RPL31 RTN1 RAB6A GABARAPL2 DYNLL1 CTXN1 BSN SH3GL2 PPP2CA PRKCG ARF3 CLSTN1 RAB3C JUND AK5 SKP1 TSPYL4 OLFM1 UQCRH TUBB2A ARL6IP1 KIF1A PEG10 LMO4 RAB3A ATP5B ATP6V0E2 MAL2 TSPAN7 YJEFN3 PJA2 SNCG BRK1 GABRA5 PTMA NAPB CD99L2 CNR1 HINT1 SOD1 RPL37A CTNNB1 TMEM155 AP2S1 ALDOA SYT5 ENO2 RGS12 MTPN BTBD10 PTGES3 PTPRN MRPL51 MT-ND4L FSCN1 NMNAT2 LINGO1 KIF3C PHB SLC12A5 MTUS1 PSMD12 C19ORF70 CDK17 LPPR4 SNRPN INA HCN1 OXR1 NWD2 PARM1 SLC8A2 PI4KA MYL6B MAPK8IP2 MPPED1 LAGE3 NDUFA12 BSG RPS5 DYNLRB1 PPP3R1 RAB6B SCG2 DCLK1 FBXL16 ATP5J2 CLTC CYCS NDRG4 MRAS UBC PSMC3 GLRA3 SIRPA EIF1B TMEM130 MT3 EFR3A DSTN ASPDH DUSP2 AP2M1 TUBB3 PIK3R1 OCIAD1 GRINA TBR1 RAB1A SNCA SCAND1 ETS2 ADSS PPP2R2B EIF1 NDFIP1 MAPK1 NGFRAP1 COX7A2 MARCKS CNTNAP5 PPDPF RPL12 DYNLT3 KCNV1 CHL1 RPS3A NREP TBC1D15 B3GNT1 GPR26 ARL6IP5 GDE1 SGK223 GSKIP KLHDC3 ARFGAP2 RRAGA CARTPT ATP6V0B VAMP2 TOLLIP PTK2B MAPRE2 SLC25A6 PHYHIPL FKBP4 HMGCS1 KLC2 RP11-345J4.4 STXBP1 CST3 WBP2 RHBDD2 CRYM ARL8A REEP5 WSB2 ATP6AP1 ADCYAP1 DIRAS1 TMOD2 PPP1CB CAMK2N2 PEBP1 UBE2N TOMM70A KCNAB2 SYNGR3 NAP1L3 PEF1 SULT4A1 SRP9 MDH1 TUBA4A CDC37 DNAJB6 NRGN FGF12 TIMP2 SNX10 TMSB4X RPL13A ITFG1 MAOB C18ORF32 COPG1 LDHB SLC25A5 DACH1 RAB7A DCLK3 MAP2K1 KLHL5 TM4SF1 NFIA SPRN PCBP1 PTGER3 ASAP1 EIF4G2 WIF1 KLC1 DNAJC6 RPL13 MAGED1 PRKAR1A ATP1A1 UCHL1 YWHAH SPCS2 PDCD5 STMN3 LIMK1 WASL UBE2E3 CDK14 RAP2A BEX2 DMTN UHMK1 GRM3 TSPYL1 C1QL2 GSK3A WFS1 RASGRP1 AHNAK2 TMEM160 OPA1 DNAJC21 SERINC1 FXYD7 SEPW1 NDUFB8 NDUFA11 VDAC2 GRIN1 FKBP1A GABARAP GHITM ID2 AES GMFB MGST3 ANO3 SRP14 BSCL2 FBXW11 SEZ6L PFN2 COA3 RHEB FAM96B PPP2CB TPI1 CTBP1 NRSN2 FTL ARHGDIG RPH3A CPNE8 TSC22D1 ISCU RAB11FIP5 GOT1 NELL2 DDN PINK1 ACTB GNG3 ATP6AP2 HOPX NDUFB10 POLR2I BANF1 VDAC3 PSMA7 ATP6V1E1 KCNA2 TOMM7 NUDT4 COX6A1 ARL8B UBB PTPRS COX8A GTF3A UQCRB SLC17A7 GLO1 GUCY1B3 KIFAP3 C1ORF115 TCEAL2 PRKACB COX5A LMBR1 PHYHIP GPX3 NRAS MLLT11 ATP6V1G1 SNX3 TUBB4B ZFAND5 RPL17 NSF RNASEK-C17ORF49 ATP6V0C RPL17-C18ORF32 C20ORF24 MBOAT7 NGRN RP11-20I23.1 RPL39 TUBB RPL7 PCDHGA6 PCDHGA5 PCDHGA10\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "pyramidal neuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-CO2 MT-CO3 MT-ND3 MT-ND4 CALM1 SYT1 RTN1 CHN1 CALM2 MAP1B CLSTN1 PPP3CA PRNP KLC1 TMSB4X NRGN HSP90AA1 MTRNR2L1 MT-ND2 MT-ND1 MT-ATP6 RGS4 ACTB CAMK2D RTN4 MT-CYB NPTXR THY1 PLD3 RNF11 NAPB C1D CCDC85B GPM6A MAP4 ATP5I LGI3 LMO4 SLC6A17 MT-ND5 DPYSL2 NEGR1 TRHDE NDUFB7 SPOCK1 COL5A2 GNG3 ENC1 NDRG4 ATP9A TRAPPC1 SELT SNAP25 RPL31 PSAP SGK223 ATP6V1B2 MTCH1 ATP1B1 CDH8 CBX6 SEPW1 RPH3A ELAVL2 CSDE1 CNTN1 NDUFA4 SYN2 VPS35 STMN2 KCNH5 EIF4A2 COX6C MRPS21 MTRNR2L12 ELAVL4 SERPINI1 CDK14 GOT1 CALM3 TSC22D1 GAP43 PSMA7 ARPP19 MTPN RTN3 NAPA CAPNS1 FAM131B NDUFA13 WDR47 USMG5 STXBP1 MAP2K1 UQCRH TUBB4B ATP1A3 TAGLN3 OLFM1 HMP19 SPOCK2 C6ORF1 GNAQ NDUFB1 ATP1A1 WBSCR17 CA10 MT-ND4L EDF1 ATP6V1F SMIM13 ZBTB18 C7ORF50 REPS2 CCT5 STMN4 CHL1 MORF4L2 ATP2B2 CCK MAPK8IP2 AP2B1 OXR1 WSB2 SARAF EPHB1 KLHDC3 MYL6B NDUFS5 CADM2 MGST3 EPB41L3 PRKACB TSPYL1 PNMAL1 UBE2D2 CARTPT ARF3 UCHL1 IDS YJEFN3 RANBP1 FBXL16 RPS15 COX6A1 NPTN MORF4L1 CAMKK2 UQCRC1 MYO1B NDFIP1 ITM2C RABAC1 YWHAQ CHMP5 CYC1 TMEM59L PDP1 BSG GUK1 SNCB RAB2A RAB7A KLK5 CPLX2 CLIP2 NDUFA1 MYEOV2 CDK5R2 OLFM2 C1ORF52 REEP5 HSPA8 SYNGR3 MAP2K4 NWD2 NARS PCMT1 DYNLL2 MTRNR2L8 PEX5L SNX3 RORB RP11-20I23.1 UBE2QL1 CPLX1 SLC12A5 FIBP TSPYL5 MPPED1 EXTL2 SNAP91 GABRA5 MRPL15 PTMA CDC42SE2 NEFL SNCA TMEM130 TMEM258 CHP1 C1QBP VSNL1 EPS15 PPP1CB PREPL PRPS1 OAT MAP1A RPL12 GRIN2A FAM96B RPL39 RAB3C MAP7D2 SNCG BNIP3 SYT5 PFDN1 CDK5R1 NDUFB3 NDFIP2 LYNX1 RPL13A NUAK1 ANO3 NAP1L2 TMX4 PGRMC1 TPPP BEX2 C4ORF3 COX6B1 STMN3 CTNNA2 ATP6V0C GDI1 GDA MTATP6P1 LPPR4 NAP1L3 ATP2A2 MAPK1 SCAMP5 RAB1A TUBA4A ATP6V1A SH3GL2 COX8A CYP1B1 RPL37A BASP1 TMSB10 UQCRQ BCAP31 HMGCR FXYD6 TSPAN7 GRINA TUBA1B CAMK2G DKK3 SMS HSPBP1 NEUROD6 CREG2 DCTN1 DNAJC6 FAM84A CABP1 RPS4X GADD45GIP1 PIK3R1 TPT1 TUBA1A GNB1 SYNJ1 CDK17 SLC22A17 RRAGA ARL6IP5 REEP2 PSD3 NGRN ALDOA C18ORF32 RPL17-C18ORF32 FTH1 PCDHGA6 PCDHGA10 PCDHGA5\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "pyramidal neuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO2 MT-CO3 MT-CO1 MTRNR2L1 MT-ATP6 CHN1 MT-ND4 MTRNR2L12 MT-ND3 FTH1 MTRNR2L8 ATP1B1 MTRNR2L6 MT-CYB GPM6A SNAP25 MAP1B ENC1 NAPB SPARCL1 ATP6V0B PPP3CA NAT8L ACTG1 NECAB1 NRGN CALM2 DPYSL2 YWHAZ VSNL1 TUBA1B SLC17A7 MT-ND2 CDC42SE2 SULT4A1 PTMA VAMP2 RCAN2 PJA2 MAPK1 SDCBP NRCAM TOMM20 YWHAG ID2 CLTC PRKACB ATP5C1 SUB1 SYT1 CA11 RAB3A ATP1A1 PRDX3 RTN4 APLP2 FAM3C VAMP1 CSDE1 PHYHIP SYN2 SEZ6L2 SERINC1 DNAJC5 FXYD6 SNCA NAP1L3 ARL6IP1 IDS PIN1 CRIM1 SCAMP5 CLIP2 TAGLN3 COX14 CTBP1 TBCB ATP6V0E2 TMSB10 NDFIP1 RASGRP1 PRUNE2 GAP43 GPR158 SCD5 BSG RPL12 FIS1 SARAF CMAS HSP90AA1 TOMM22 SNRPN INPP5F PPIA SYT2 TSPYL4 SPOCK3 WSB2 TUBB2A ZFAND5 CADM2 SCN3B EPB41L3 DNAJB6 PLCXD2 SV2B MANBAL COL5A2 C6ORF1 TMEM70 ATP1A3 SSBP3 TMEM130 VIP MAP2K1 MRPL20 SERPINI1 ATP6V1G1 LMO4 CADM3 CDH22 OPA1 MAPRE2 PSMC3 ZNF365 CLSTN1 COPS8 HEY1 AK5 NDUFA1 ATP2B2 SYNPR MT-ND5 CDK5R1 CTXN1 BRK1 MTATP6P1 GAPDH GOT2 IGFBP2 FKBP1A HMGCS1 RBX1 ELMO1 THY1 WASF1 RIT2 EFR3A RAB3C ZBTB18 CKB ASAP1 STMN2 NBL1 RAP2A HCN2 FABP5 PIK3R1 CPE HSP90AB1 ATP6V1A RHEB SLC12A5 PCDH8 MAP1A CLGN CYFIP2 TMEM158 GMFB RTN1 GHITM SSTR1 CREG2 GNG3 MT-ND1 SLC22A17 KIAA1045 MAGED1 SPOCK1 ATP6AP1 TSPAN7 ATP2A2 CCK KLHDC3 EDF1 FNDC4 RNF11 PDZD11 ARHGAP35 PPP2R2C NAP1L2 PCBP1 NCDN PRKAR1B KCNA1 YWHAB OXR1 ARF3 DCLK1 TSPYL1 RPL23A SERP2 PRNP NPTN ATP6V1F NUTF2 NGFRAP1 JUNB RGS4 NCEH1 TPGS2 KLC1 HINT1 CHMP4B MTPN AES ATP6V1B2 RAP1GDS1 NDUFB5 ARFGAP2 PAM PRKAR1A DKK3 RTN3 SNX10 SYT11 POU3F1 TMOD2 NSF ARF5 RPS26 TUBB\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "pyramidal neuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MAP1B SYT1 RTN1 CLU YWHAG THY1 TUBB2A KLC1 ATP1B1 NRGN CALM1 MT-CO3 RTN4 MT-CO1 SLC17A7 RTN3 UCHL1 BEX1 PEX5L ATP6AP2 PJA2 PKM VSNL1 ATP1A3 CLSTN1 GPM6A SNAP25 SERINC1 GRIN1 NEFL TMSB4X PRNP MTRNR2L1 GAPDH ENO2 CHN1 CADM3 ENC1 CALM2 SPARCL1 YWHAQ CLTC APP PTPRN STMN2 PSAP TSPAN7 AP2M1 FXYD6 ATP2B2 HSP90AA1 CHGB DPYSL2 ATP2A2 OAZ1 SPCS2 GNB1 RAMP1 EGR3 NEFM OAT SLC8A2 RPH3A RPL35 TMEM59L TOMM20 PTMA MAL2 NPTX1 NRCAM PPP2CA MDH1 CDK5R1 GRIN2A NAP1L2 TBR1 PEBP1 MT-ND3 SARAF ACTB ALDOC DMTN ATP6V1B2 HMP19 TSC22D1 AP2S1 NDFIP1 VDAC1 CCK GDI1 LMO4 SERPINE2 MAPK1 PTPRS SPOCK1 BAALC SNCA ENO1 DDAH1 TRIM36 AES NAPA PCSK1 RPL32 ARF1 ATP6AP1 NAT8L APLP1 YWHAZ SDCBP PNMA1 PRKCB NCDN MT-ATP6 ELAVL4 MFN2 CCDC85B NECAB1 LPPR4 S100A6 NUAK1 ATP6V0B PPIA CDH13 HAPLN4 NSF BSCL2 CIAPIN1 UQCRH ATP6V0E2 MYL12B SYT17 SYT5 COX7C ATP6V1A NDUFB7 SV2B HOMER1 CKB SELT PAK1 NDUFB4 EID1 RNF11 OCIAD1 HPCA CD99L2 PDE1A PGK1 DNAJB6 CREG2 HINT1 KLHL12 SLC25A22 SNCB RPL8 BSG SCN3B CDC37 HTR2A HOPX TRIM37 PRKACB MAP2K2 ATP6V1E1 KIF1A VPS35 OPA1 PHYHIP ATP9A BSN HS6ST3 MRFAP1 GPX4 CYC1 NDUFA5 NDRG4 DNAJA1 FAM134A APBB1 INPP5F TSPYL4 MAST3 GAP43 MT-ND2 GABARAPL2 SYN1 NCOA4 RPL26 ATP5G3 RAB1A CNTN1 SCAMP5 GUCY1A3 IDH3A ATP5F1 HN1 GDA PLCB1 PNMA2 PSMA7 REEP2 AP3S1 COL11A1 RAB27B RABAC1 PSD3 BANF1 SRP9 C11ORF31 ATP5B PITPNA COPS7A BASP1 TAGLN3 CABP1 TPI1 PPP1R9B TMEM155 TSPYL5 EIF1AX ASNA1 PAQR9 MTPN ANXA6 CYB5R3 FBXW11 COX4I1 FSCN1 PACSIN1 MT-ND4 CMAS LANCL1 NPTXR SCOC SELM NGRN TMOD2 SYNGR1 YAF2 TMSB10 CLIP2 CADM2 NGFRAP1 OPN3 MORF4L1 ZBTB18 SERINC3 OXR1 OLFM1 NUPR1L SMIM12 KCNAB2 GHITM WDR47 TOLLIP PFN2 RRM2B NTNG1 PTGES3 ATPAF1 ATP6V0D1 NIPA1 RGS4 PAM ADD2 TPD52 BAI2 DYNLL1 RPL13 MAPK8IP2 MFGE8 TMA7 SLC25A6 SERPINF1 DCLK1 C12ORF49 LINGO1 ZFAND5 RAB3C CALM3 RPL21 C14ORF132 FTH1 OLA1 INA NFE2L1 IGSF21 MAP1LC3A KCNF1 LGI3 SULT4A1 SCG2 OXCT1 C1ORF115 GSK3A BCAP31 PPP1CB TUBA1B TUBA1A EHD3 MTATP6P1 PSMD12 BEX5 YWHAH RPL39 TSPYL1 NHP2L1 NDUFC1 ATP5A1 MPC2 TOMM70A PVRL1 CYFIP2 SNRPN EFHD2 CDK14 PFKP ACTG1 CPE WSB2 ACOT7 SIRPA FAIM2 PCMT1 STMN1 NAP1L3 MYEOV2 SYT4 C4ORF3 SLC9A6 GADD45GIP1 RPS3A GNAQ CCDC25 MT-ND1 RPL7 SH3BGRL3 BDNF GOT1 HSPA8 WBSCR17 TUBB4A HMGCS1 UBB SLC22A17 MRAS APOLD1 IDS MTRNR2L6 MBOAT7 PET100 CORT ALDOA TUBB PCDHA4 PCDHAC1 PCDHA10 PCDHA9\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "pyramidal neuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RTN3 MT-CO1 MT-CO2 CHN1 CALM3 RTN4 SYT1 TUBA1B MAP1B MT-ND3 SNAP25 CALM1 BEX4 YWHAG SPARCL1 STMN1 MTRNR2L12 CALM2 VSNL1 PRKCB TUBB2A PREPL GPM6A CLSTN1 PRNP VSTM2L EIF4A2 TMSB10 FAIM2 PPP3CA PCP4 PGM2L1 COX7C THY1 RP11-195F19.5 MT-CYB LYNX1 ARL6IP1 ATP1B1 RPL41 NEFL HSP90AA1 RTN1 GRINA PDE1A NAPB SLC24A2 PPP3CB ENC1 TKT MT-CO3 OPCML VPS35 MT-ND4 SLC17A7 LPPR4 ATP1A3 STMN2 MFSD6 RRM2B DPYSL2 NCALD CLTC NMNAT2 TRIM35 STX1A MTRNR2L8 HSP90AB1 GUK1 NUAK1 PET100 PSMA7 NAPA APLP1 SYT11 RTN4R PRKAR1A CAMK2D MTRNR2L1 MTCH1 FXYD6 CABP1 NDUFB1 LMO4 SERPINI1 TMEM59L GABARAPL1 PLCXD2 SV2B PRKAR1B SYN1 RPL21 MLLT11 C16ORF13 GOT1 PEBP1 SYN2 NRCAM NELL1 NPTX1 CPLX2 FBXW11 RPS28 IPCEF1 ETV1 COX14 DYNLL1 SLC30A3 OLFM1 MAP2K1 ZMAT2 ATP1A1 MAP2K2 MT-ND5 PLD3 ATP6V0E2 LMBR1 EIF1B INPP5F NDUFA2 GLIPR1 RORB SNCA RPL35 ATP6V0C RP11-20I23.1 RAB3A LMO3 SLC6A17 C4ORF3 BEX1 CHGB PPP2CA MAP4 SEZ6L2 WBSCR17 CHMP4B SERF2 C14ORF132 TUBA4A LL0XNC01-16G2.1 PTMA PFN2 UQCRQ NRN1 NDUFA1 KLHL5 NDFIP1 C7ORF50 MPC2 KCNK1 PPP2R1A PHYHIP SLC22A17 PPP1CB KCNAB2 TPPP CTNNB1 DPY30 BANF1 RAN CCDC25 BSN VDAC1 ARL6IP5 CAMKK2 ATP5B TMEM151A TRMT112 ACTG1 ATP6V1B2 HMGCS1 SLC39A10 NDUFB2 PRKACB GABRA1 CMAS IDS SPRYD3 SPCS2 MLF2 UQCR10 HPRT1 COX5B NEFM C19ORF70 OAT COX7A2 NELL2 ATP6AP2 ARPC4 FTH1 TMSB4X SEPW1 DHCR24 LDOC1 CAMK2G SCAMP5 CLTA SEZ6L COX7A1 ATP6V1C1 TMTC4 CDK17 CCK ARF3 BCAP31 PEG10 SIRPA NPTN FAM134A LMBRD2 SCD5 BSCL2 KIF5A PGRMC1 ACTR10 CD99L2 SYT4 TMEM65 SULT4A1 TOX PVRL1 BTBD10 ITM2C MTPN PJA2 GNB1 CBX6 CLIP2 GAPDH SOD1 GPX4 UBB COPS7A TMEM132D TAGLN3 BAI2 TM2D3 DCLK1 OAZ1 AES RPL23A ENO2 ARF1 MT-ND2 HS6ST2 CDK5R1 UBE2D2 RPL26L1 HMGCR ATP5G2 B3GNT1 WBP2 ATP6V1A POMP HDLBP UQCRC2 PPP3R1 MRAS UQCR11 KCNA2 NREP SKP1 VAMP2 PDP1 SPTBN1 RAPGEF5 RLIM STX1B TUBB3 PACSIN1 SMYD2 SLITRK1 SMIM13 COPRS ATXN10 NEFH DKK3 NECAB1 KCNA1 SERINC1 B3GALT2 CKB CLU QDPR NDN PEF1 PTPRS GPR158 SLC9A6 CADM2 NRGN PLCB1 KCNC2 MGST3 MRFAP1 HMP19 ATP5F1 ATP9A NARS ARPP19 ADORA1 ATP6V0B CRIM1 BRK1 REEP2 ATP2B2 TMX4 SARAF AK5 SRP14 NAA38 TPRG1L ASAP1 MAGEH1 SRP9 PRDX5 SUMO1 PSMD12 LINC00086 RAB5C CCDC124 PCYT2 PTPRN ELAVL2 MPPED1 ANXA6 CLTB PSMC3 PPIA KLHDC3 C1ORF52 DNAJC6 CX3CL1 DIRAS2 MORF4L1 DNAJC5 CPE PSAP OCIAD1 FAM163B CHRM2 FAM174A EGR3 WASF1 NDUFB7 YWHAH POLR2L NIPA1 PFKP RHEB NGEF ALDOA NGRN PSMB3 YJEFN3 MT-ND1 MTRNR2L6 MTND1P23 PCDHAC1 PCDHA9 PCDHA4 PCDHA10\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "pyramidal neuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SNAP25 MT-CO1 MT-ND4 MT-CO2 SYT1 MT-CYB CLU MT-CO3 CALM2 GAPDH NRGN GPM6A MAP1B RTN4 ATP1B1 RTN1 NDUFA4 HSP90AA1 TSPAN7 DPYSL2 CCK ENC1 PHYHIP MT-ND2 TSPYL1 FTH1 ATP6AP1 NECAB1 RTN3 TUBA1A BRK1 SYNGR1 DIRAS2 VSNL1 TMSB10 ATP5B MT-ND3 PPP3CA CHN1 SKP1 CALM3 UBC C14ORF2 ACTB ATP1A1 NPTX1 LMO4 RAB3A HK1 SLC38A1 SLC17A7 EIF1AX DYNLL2 COX6B1 PRNP SNX10 MT-ATP6 DCTN1 NDUFA11 ATP2B2 PIK3R1 CDK14 PEBP1 VAMP1 EGR3 MTATP6P1 TMEM130 TMSB4X ISCU TUBA1B THY1 HSP90AB1 PSAP SSBP3 APP PNMAL1 MT-ND4L MAPK1 NGFRAP1 CPE FKBP1A OLFM1 STMN1 SNCB ATP6V1A CADM3 CALM1 KIF1A PGAM1 ATP2A2 IDS ENO2 CYSTM1 HS6ST3 CCDC85B MAP4 C1ORF95 UQCRH IPCEF1 VAMP2 FAM174A MFSD6 CEND1 ARHGAP29 CABP1 GDI1 SPTBN1 COPRS RAB2A SARAF PNMA2 RCAN2 NSF UBE2M CREG2 FAT3 NCAM2 YWHAG STX1A MRFAP1 C12ORF49 BEX4 ACOT7 ARF3 CTXN1 DPP6 STRAP YWHAB CRKL CHMP4B PGD BEX1 C1ORF115 WDR47 CARTPT ATP6V1E1 SERINC3 ELAVL4 NMNAT2 ATP2B4 DYNC1I1 SCD5 NARS SLC25A6 KIF5A TAGLN3 TEX2 GABARAPL2 SCN1A CA10 RPL36A CD99L2 SAMM50 KLC1 CTNNB1 CLTA FAIM2 RHOA SLC24A2 ATP6V1C1 EIF1B DNAJC6 FUNDC1 KCNA2 SOD1 HCN1 TPD52 TPPP MORF4L2 ATP6V0B MTRNR2L1 RAB40B NTHL1 FABP3 NGEF ARL4C CDK5R1 PREPL TMEM150C MAST3 ACTR6 WSB2 SERPINI1 FTL RPS10 LDOC1 SH3GL2 ARL6IP5 SEC61G UBB CRYM CHP1 STK24 PDP1 ACTG1 GAP43 PRKACB CBX6 ALDOA RGS4 LMO3 NDFIP1 RAB3C SLC25A4 MFGE8 NPTN RPL15 ITM2C ARL6IP1 PI4KA CHL1 SMIM12 FBXW11 P2RX6P SERP2 C2ORF80 CAMKK2 ARHGDIG CX3CL1 NCEH1 SLC9A1 DHCR24 ZNF365 SLC12A5 HMGCS1 STMN2 PRKAR1B BEX2 TOMM20 H2AFZ ATP9A PRKCB SPOCK1 NAP1L3 PSD3 AK5 PRDX2 MAPK8IP2 SNX17 UBA52 SCAND1 BSN NAPA ATP5A1 SPARCL1 MYEOV2 PEA15 LYSMD2 MDH1 VDAC1 RPS27A PCBP1 SEZ6L GNB1 DRAP1 CYP1B1 RAB5C POLR2I GMFB GABARAPL1 ATP6V0E2 SYN1 TSC22D1 CAPNS1 GLO1 COPS8 ANXA6 PKM SYT13 ATP6V1G1 S100A6 PLD3 NEUROD6 CAMK2N2 DLD PJA2 NHP2L1 COX6C CKB ATP5I JUN PRDM16 FAM134A CDH8 PHYHIPL ANO3 ABHD8 NOV NDRG4 SV2B FXYD7 SYT11 LANCL1 BNIP3 GUCY1B3 GSK3A YWHAH RAB6B GRIN1 RP11-20I23.1 NUDT21 MTRNR2L6 TUBB3 C11ORF31 ATP6V0C ATP6V1G2 PCDHAC1 PCDHA4 PCDHA10 PCDHA9\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "pyramidal neuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MT-CO2 MT-CO1 CHN1 MAP1B SNAP25 CALM2 CALM1 MT-ATP6 ARPP19 CLU ACTB TSPAN7 EIF4A2 RTN3 ENC1 MT-ND2 NPTX1 MTRNR2L12 VSNL1 PHYHIP SYT1 PRKCB TUBA1B PREPL SPARCL1 NGEF APP PSAP RTN1 SPOCK1 NRCAM SH3GL2 C14ORF2 YWHAH LMO4 SLC17A7 TMSB10 TMSB4X FTH1 DIRAS2 SERINC1 MT-ND4 NEFL MTATP6P1 RTN4 CDK5R1 MT-ND3 PDP1 TMEM59L RAPGEF5 MTRNR2L1 CERS6 ATP6AP1 NGFRAP1 PMEPA1 PJA2 LYNX1 PPP2R2C PRKAR1B PI4KA CTSD SYT5 NCDN MAPRE2 PSD3 KIF5A SMIM13 NRGN NECAB1 CCK ARF3 MAP2K1 FAIM2 PCDH17 ATP9A VAMP2 SLC9A6 IDS GDI1 ITM2B ATP1B1 PEA15 TAGLN3 MTRNR2L8 CLSTN2 SLC24A2 ARF1 CEND1 SERP2 TMA7 FXYD6 NUDT4 APLP1 YWHAG OLFM1 CFL1 MT-CYB CKB DNM3 TPPP UBQLN2 PHYHIPL LMO3 STMN1 ATP2B2 DIRAS1 NDUFB2 MT-ND1 APLP2 SUMO3 ATP6AP2 PKM BASP1 BHLHE40 GPM6A APBB1 GAP43 SLC8A2 PNMA2 MPPED1 CALM3 KLC1 HK1 AK5 THY1 DKK3 CBX6 MTRNR2L6 NSF APEH KIAA1045 REPS2 CPLX1 SNRPN EIF1B OXR1 PFN2 BSN C4ORF3 RPS4X PPP3CA VAT1L CAP2 KCNC3 COX7A2L PEG10 NPTX2 CHP1 GPCPD1 NDUFAB1 ITM2C VDAC2 IGFBP6 PLD3 SERINC3 ATRN ELMO1 COX4I1 MTPN CHCHD2 PGAM1 CAMK2D SNRNP25 PPIA ATP1A3 HPRT1 TMSB4XP4 NEFM LDOC1L ENSA ATP5A1 DPYSL2 ZFAND5 GUK1 DNAJC5 NDRG4 KLF10 SKP1 PTPRN SUMO2 YWHAZ RHBDD2 SLC22A17 SSBP3 DMTN SCN4B TMOD2 PITPNA TESPA1 DNAJC4 AHNAK2 MLF2 SYTL2 DNAJB9 SSTR2 TCEAL5 ID2 NCAM2 OPA1 AP1S1 FBXL16 UBE2QL1 TCEB1 PRKCG NAP1L5 CCT5 PAK1 RAB3C DCLK1 STXBP1 RPS10 ATP5J2 MCHR2 ARL8A STX1A SYT4 PPM1A EPS15 PTPRS RHEB CRYAB CREG2 KIF1A SYN2 TOMM20 TMEM14A FAM3C SCN2B FKBP1A SUMO1 PIN1 SCD5 CDKN2D RAB4A RAB3A KCNK1 CPE ATP5G1 NHP2 NEGR1 LMBR1 BEX1 NDFIP2 EIF1 MTCH1 FSCN1 CAMK2G MDH1 HMGCR USMG5 TPT1 PRNP NBL1 SUB1 JUND ATP2A2 FAM127A ELAVL2 TXN C9ORF16 SRP14 KRAS CHMP4B TRMT112 SCAMP5 NRIP3 WDR47 TSPYL4 RPS15 HOPX RGS4 STMN2 SAP18 UBE2N NAT8L ATP2B4 CLIP2 ANXA6 NIPA1 GOT1 OPCML DPY30 TCEAL2 CD99L2 OPN3 STX1B BTBD10 UQCR10 CLTA DPP6 CDK14 NAP1L3 WBP2 GRINA ENO2 SYNPO SYT11 EPDR1 TCEAL7 NPTN IGFBP5 AQP4 RLIM SYNJ1 HSP90AB1 MFN2 YAF2 MLLT11 MORF4L2 SHARPIN RAB5C ACTR10 NAPB PPP1CB ARL1 EPB41L3 SNN CA11 NMNAT2 CLIP3 NDUFB10 TEX2 NELL2 EGR1 NDUFA2 GTF3A LGI3 ATP5B CCDC169 CADM2 ESYT1 SEPW1 CLSTN1 RAB6A PRKAR1A WASF1 EFR3A HSP90AA1 OAT SYT13 SPTBN1 GAPDH DYNLL2 CDS1 CAPNS1 MMP24-AS1 TMEM70 TMEM155 RAB6B SLC39A10 APOLD1 ALDOA RNASEK-C17ORF49 PSMB3 ATP6V1G2 TUBB\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "pyramidal neuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-CO2 MT-CO3 SYT1 CALM2 SNAP25 MTRNR2L1 GDI1 NRGN CHN1 ATP1B1 MAP1B ARPP19 PRNP VSNL1 SARAF MT-ATP6 CALM3 MT-ND4 NEFM CKB MT-CYB RTN3 MT-ND1 PKM TMSB4X SLC17A7 HSP90AB1 MAP2K4 GPM6A YWHAZ PRKACB RAB6B NDFIP1 GAPDH STXBP1 ACTG1 OXR1 TMSB10 FTH1 YWHAG CLTC ACTB MTRNR2L6 FGF12 PJA2 PPP3CA ENO2 THY1 ATP2A2 MT-ND2 PSAP MAPRE3 KIF1A NEFL APLP1 LMO4 GHITM NAPB PRKAR1B EGR3 CALM1 DCLK1 PREPL ENC1 TCEB2 CLU SPOCK2 YWHAB YWHAH SERINC1 SNRPN ZBTB18 TUBA1B DKK3 MTRNR2L12 MAP4 NELL2 TUBB4A TUBB4B RCAN2 PEX5L RTN4 ATP6V1A SPTBN1 RTN1 CCK PPP2R1A CFL2 PI4KA PNMA2 PRKCB RPL26 AP2M1 VPS35 PINK1 CYFIP2 SH3GL2 ATP2B2 LYNX1 RPL13A ATP6V0C IPCEF1 CRYM CDK5R1 ISCU TOMM70A PFDN1 TUBA4A ALDOC PPP3CB AP1S1 CAPZA2 NGFRAP1 RP11-20I23.1 MTATP6P1 TAGLN3 EPS15 COX17 NME1 NCEH1 SSBP3 TUBB2A FBXL16 MTCH1 DPYSL2 MAPK1 DIRAS2 COX5B RPL41 PTGES3 GNG3 DYNLRB1 NELL1 SLC9A6 PPIA CEND1 CMAS APLP2 EGFL7 BNIP3 C14ORF2 SLC22A17 WASF1 TMEM59L ATP1A3 PPP2CA SPOCK1 ITM2C TMEM35 KCNAB2 GADD45B TOLLIP MAST3 CHL1 PSD3 SKP1 RAB3A OCIAD1 NFE2L1 SLC25A5 MFSD6 PGRMC1 SLC12A5 CDH8 APP ELAVL2 CREG2 PNKD SELM NDUFA12 RPL11 EIF4A2 GMFB SELT RAB6A PDP1 MAPRE2 RAB3C TSPAN7 AK5 WSB2 GUK1 HCN2 UQCRH ITM2B PET100 SLC39A3 PGAM1 UBC NDRG4 ATP6V1G2 NSF ATP5O RASGRF2 MCHR2 BEX1 REEP5 SYT5 VDAC3 AES CDK17 USMG5 ACTR1A ELAVL4 FOSB PACSIN1 STMN2 KIF3C TPT1 ELMO1 FAM127A HAPLN4 FXYD6 SNCA PLCB1 ARL6IP5 SNX10 ENO1 SIRPA STX1B PHB RHBDD2 NDUFS5 STMN1 CADM3 GPR158 NDUFA11 MRAS TMEM130 UROS TM2D3 DSTN ACP1 DDN CHP1 SMIM13 RPL31 BRK1 KIF5A CHMP4B SYT11 UBE2V2 SNCG AP3S1 ATP5G2 KLC2 GRINA SAP18 CAMKK2 WBP2 SRP14 PEA15 D4S234E GSKIP KCNK1 CACNG3 PRUNE2 GABRA1 SYT4 UCHL1 NEGR1 UBE2E3 RRAGA PRKCE B3GNT1 COX8A TUSC2 KRAS WNT5A HCN1 CORO2B GDA AURKAIP1 CDC42SE2 PGM2L1 MAP1A SCAMP5 MAP1LC3B CERS6 PFKP CLTA COX7C NDUFB5 ATP6V1B2 ACOT7 CLIP2 SCN1B SCN3B NDUFB8 MAP2K1 ARHGAP35 CTXN1 KCNA1 GOT1 IQSEC1 MORF4L1 ABHD8 MRFAP1 TUBB3 ATP5J2 C7ORF50 CNRIP1 NDUFB7 TOMM34 MT-ND5 SUMO2 NAT8L NCBP2-AS2 HK1 PPP1CB COPS7A CLIP3 ARL1 CRIP2 TMEM141 RAB1A NDUFA5 PCSK1N ATP6AP1 LDHB DHCR24 C9ORF16 MT-ND3 CX3CL1 CAPNS1 ATP5B KITLG RPL13 CFL1 ALDOA CBLN4 ATP6V0B CTBP1 SV2B SNCB COMMD6 HOPX COX6A1 NEFH NUDT21 PSMB5 PFN1 PHYHIP RP11-632C17__A.1 TMOD2 BCAP31 PRKAR1A SEPW1 ESYT1 ENOPH1 NPTX1 BSG CBX6 MARCKS NEUROD6 SLC8A2 RNF11 WDR47 PCDH8 MLLT11 ZNF503 NFIA FAT3 ERH FTL NECAB1 ARL6IP1 PTK2B PTPRN SDCBP TENM3 FSCN1 SEZ6L CD63 HDLBP EID1 MTPN PIP4K2A GRIN1 GPX4 CAP2 OPN3 DYNLL2 CTSD ETS2 OLFM1 TPD52 GABARAPL1 OST4 ATP9A KLHDC3 ANXA7 UQCR10 NTN4 SCN2B TCEAL5 SYNGR1 MZT1 NAP1L3 GRIN2A ATOX1 GABARAP NUAK1 NDUFAB1 MT3 PPP2R2B NARS CHMP5 FAM174A LPPR4 YIPF3 UBA1 NDUFB2 PTMA HSPBP1 PAQR8 ASNA1 MMD NPTXR HMGCS1 CPLX1 DYNLT3 SNRPE SLC39A10 KLC1 CAMK2D CDK14 CPE PSMD12 DNM3 NRCAM NKIRAS1 FAM84A SCN4B UHMK1 TMA7 VSTM2A RBX1 RNF208 KCNC3 ANXA6 KIFAP3 HSPA4 MLF2 RPH3A BSN CABP1 LINC00116 RPL37A ZBTB45 EIF4G2 KIF21A BTBD1 GUCY1A3 MYL6 ARL8A GPX3 SLC25A4 RPS4X CA4 CDH13 GNB1 WBSCR17 DNAJB6 SERINC3 DNAJC4 PBX3 NAPA ATP1A1 EHD3 ZFAND5 CA10 PSMC1 RPL6 MIF BSCL2 NDUFA13 RNASEK-C17ORF49 NGRN RPL17-C18ORF32 IDS WI2-1896O14.1 RPS12 C18ORF32 RPS28\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "pyramidal neuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: CCK MT-CO2 MT-CO3 MT-CO1 ATP1B1 CHN1 RTN1 ENC1 MAP1B HSP90AA1 RTN4 PREPL SYT1 SNAP25 CARTPT GDI1 CALM2 NGFRAP1 YWHAG PRKCB APP NRGN PRNP ACTB DCLK1 GPM6A PSAP VSNL1 CHL1 GAPDH RTN3 CKB MTCH1 TUBB4B SEPW1 UCHL1 SLC39A10 ITM2C SERINC1 SLC22A17 GNAQ CADM2 YWHAH BEX4 PJA2 PSD3 MT-ND3 CALM1 ATP1A1 SPARCL1 TMEM130 NRCAM ENSA MT-ND2 NEFL NAPA PPP3CA OLFM1 PRKACB AK5 CALM3 SNX10 SCN3B EIF4A2 TPI1 NGEF MAP4 ATP2B4 SARAF HK1 PTMA SNRPN TSPAN7 MTRNR2L12 RPL41 UQCRFS1 ATP6V1G1 CYFIP2 NEFM EIF1AX UBE2QL1 PRKCE RGS4 PPP2R2C NAPB CAPNS1 RHBDD2 MT-CYB NUDT4 FAM174A RAB40B NPTXR TXN SNAP91 GPX4 SV2B TMEM59L PFN2 SLC17A7 CAP2 RASGRP1 NECAB1 SPOCK1 PDP1 TESPA1 ATP9A SYT11 THY1 CLTC PRKAR1B TSC22D1 RPL32 ATP6V1A NDFIP1 ARF5 ARL6IP5 CTBP1 UQCR11 DPYSL2 LYNX1 OCIAD1 FTL MPC2 DNAJC6 PTPRS RPL15 GABRA1 DPP6 BSG CD59 CLSTN1 MT-ND4 NCEH1 TUBB2A NSF ALDOA RP11-20I23.1 ATP6V0C KCNAB2 NDUFA2 NAP1L2 SEZ6L2 STMN4 C14ORF2 KLC1 SOX4 CAMK4 ARL2BP SLC12A5 DDAH1 CPNE4 BTBD10 FAIM2 GRIN2A SNCB ARF3 CTSD FIS1 HN1 DNAJC5 ATP2B2 C19ORF70 HOMER1 TMEM258 VAMP2 NEGR1 RAB2A BEX1 UBC CADM3 LANCL1 STXBP1 GOT1 MLF2 HNRNPH2 FASN RPL38 CTC-575D19.1 ARPC4 VSTM2L AKAP12 NMNAT2 PEBP1 CDK5R1 UQCRC1 SULT4A1 ACTR10 ATP6AP2 NDUFS5 RPL26 LMO4 PIK3R1 NDUFA5 ZBTB18 PFKP SIRPA TGOLN2 TAGLN3 RPS5 YWHAB POLR2L CREG2 PTHLH CYCS MT2A PPDPF PAK1 OAT FAM3C EGFL7 PPIA RORB SERF2 TMA7 SUSD4 SH3GL2 STMN2 COX6B1 LPPR4 FKBP1A HMP19 MT-ATP6 VDAC1 IDS COX5B PGM2L1 CNTNAP3 CMAS RPS15 TSPYL5 DIRAS1 TERF2IP TSPYL4 TUBA1B RAB3C USP5 PGK1 FBXO2 CHGB PCMT1 ATP5F1 DGAT2 TOMM20 TBC1D7 TOX3 NFE2L1 HMGCR PSMA7 CTNNA2 FTH1 STMN1 ACTR6 CX3CL1 AP3S1 PLCB1 GSTO1 GUCY1B3 HCN1 COX6A1 ATP6V1C1 CADPS2 CPE RLIM RASL11B PRKAR1A NDRG4 RPL39 BTBD1 CDKN2D ETFB FXYD6 NDFIP2 MDH1 FRZB MT-ND1 TPT1 UQCR10 SPOCK2 PKM JUND BTNL9 EXTL2 SYTL2 ZFAND5 PRELID1 MRPL20 PRUNE2 HIGD1A DNAJB6 SLC25A4 COPS7A EDF1 TCEB2 UBE2E3 MAGEH1 NUAK1 RSL24D1 UBA1 PLSCR1 IPCEF1 PGRMC1 TUBA4A ATP2A2 PPP2R4 CCDC115 C19ORF10 BRK1 FGF12 OAZ1 SERPINE2 MED31 PPP3CB TM2D3 FSCN1 GABARAPL1 ELMO1 FAM19A2 KIF1A GRINA SUB1 NDUFC2 ARPP19 RPL3 COX4I1 RAB6A ENO2 APLP2 PSMC5 WASL RPL13 ARL8B ADORA1 SKP1 PHYHIP UBA52 DYNLRB1 TRPT1 AP2M1 TMSB4X TSPYL1 HINT1 CDK17 MORF4L1 RAB5C CTNND2 C4ORF3 DHCR24 DYNLL2 ATP6V0B ARHGAP35 ATP6V0E2 FXYD7 DEPDC1B UBE2F PEA15 RAB6B CAMKK2 CNTN1 ANXA6 EGR3 CLU CIAPIN1 ATXN10 KCNC2 TMSB10 ATP6V1G2 TUBB3 NGRN PSMB3 BSCL2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "pyramidal neuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-CO3 MT-ND4 RTN4 MT-CO2 SYT1 SNAP25 MT-ND2 CHN1 RTN1 MT-ND1 ARPP19 MAP1B CALM1 ENC1 GPM6A PTMA MT-ATP6 CLTC RPS15 MTRNR2L1 FTH1 MTATP6P1 CALM2 ACTB MT-ND3 SNCA TSC22D1 VSNL1 MAP1A PPP3CA TMSB4X ATP2B2 STMN1 NEFL NRGN VAMP2 SNX3 GAPDH UHMK1 MT-CYB MTRNR2L12 SLC39A10 MDH1 NGFRAP1 MT-ND4L DCLK1 GNAQ ARL6IP1 H2AFZ MT-ND5 PIN1 UQCRC1 RPL39 NAT8L PRKCB UBE2V2 NDFIP2 RTN3 SARAF ALDH5A1 PRKACB NEGR1 CADM2 ATP6V1A CLSTN1 PRKCE OLA1 PPP3CB BASP1 SNCB PSAP EXTL2 APLP1 ATP6V1C1 ERH EPB41L3 CALM3 CACNG3 SYT4 COX7A2 ARF3 RAPGEF5 HSP90AA1 GABARAPL1 TBR1 SUMO2 YWHAZ PPIA ARL4D BEX5 ZBTB18 PSMD8 PTX3 ACTG1 SELM UQCRFS1 FKBP8 MTRNR2L8 COTL1 AK5 ACTR1A MTPN KIF1A PHYHIP KCNMB4 SYNGR1 UBC APP DNAJC6 DYNLRB1 PIP5K1B KCNA2 STXBP1 PDP1 BEX2 EIF1 PREPL NDUFA11 NAP1L2 SNRPN PEX5L NAPB LDB2 TMTC1 TSPYL1 SLC12A5 IDS TRHDE CAMKK2 WASL PFN1 KRAS TUBA1B SGCD SERF2 GNG3 PNMAL1 BRK1 SRP9 LMBR1 VDAC1 PKM DPYSL2 SCAMP5 PCYT2 TMA7 PNMA2 FAM19A2 IQSEC1 ANO3 EPS15 RPL3 MAPK1 SLC22A17 OAZ1 KCNAB2 DDAH1 RAB3A NAP1L5 ATP1A1 PPP2CB CPNE8 C11ORF31 FAIM2 PFN2 SRP14 WDR47 PACSIN1 NCDN HK1 SERINC3 TMEM59L HSPE1 CDKN2D CYFIP2 RNF11 ATP5F1 TPRG1L UQCRH MFGE8 NUAK1 ATP5I STMN2 PVRL1 HIGD1A LINC00087 KIF21A CDK5R1 TOMM20 PLD3 ATP5G1 HINT1 CAMK4 RAB6C-AS1 PRKAR1B SLC8A2 TUBB4B UBE2E3 MIEN1 CDH8 SNAP91 MLLT11 PAK1 EGR1 KLHL12 LINC01296 RPL41 SIRPA PEBP1 ELAVL4 ANAPC11 DIRAS2 PNMA1 FAM219A RPL37A LRRC59 CLU TESPA1 C4ORF3 RHEB PEG10 TMSB10 FBXL16 RPL18A CTXN1 PGM2L1 ENO2 YWHAB THY1 EIF4G2 EGFL7 OSGEPL1 RORB GABRA1 RAB11A YWHAH MTRNR2L6 REEP5 LMO4 SYN1 INSIG1 SCOC EID1 NELL2 YWHAG FAM127A ENO1 HSPB8 EVI2A RPL26 ATP2A2 CHP1 DNAJC5 ISCU FAM134A HSPA4 TAGLN3 DIRAS1 SLC24A2 STMN3 SOD1 FTL MORF4L1 PPP1R7 MC4R SH3GL2 OPCML ATP6V1E1 ITM2B KCNH5 KCNK1 ARL4C C1D KIAA1045 TUBA4A MYEOV2 ACTR6 ATP6V1G2 RPS28 RPL17-C18ORF32 ALDOA ATP6V0C C18ORF32 NSF RP11-20I23.1 RPL21 RPL7 RPL36A MIF\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "pyramidal neuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SYT1 RTN3 ENC1 CALM1 SNAP25 MT-CO2 RTN1 MT-CO1 MT-ND4 MT-CO3 PJA2 THY1 SPARCL1 TUBB4A CALM3 APLP2 NDRG4 SLC17A7 GAPDH SARAF SLC39A10 RGS4 CALM2 NECAB1 TSPYL1 SIRPA CCK STMN2 MAP1B MT-CYB RTN4 PSAP FTH1 MT-ND2 SYN1 SLC24A2 PCMT1 DPYSL2 CHN1 TMSB4X C14ORF2 STXBP1 TPRG1L TESPA1 VSNL1 GDA CKB CNTN1 ARPP19 PPIA PPP3CA YWHAG LGALS1 GPM6A ENO2 NAP1L3 TUBA1B SYT4 CLTA HSP90AA1 EPHB6 TUBB PDE1A NEFL CLSTN2 UCHL1 NDFIP2 CLU CYCS SYN2 OAZ1 DHCR24 BSN PRKCB NDUFB8 COX7C TMSB10 MORF4L1 MAL2 PEBP1 ATP6V1F NDFIP1 ATP2A2 DNAJC5 PRKACB SYNJ1 ARL6IP1 GDI1 TAGLN3 SULT4A1 ACTB RPL37A NAPB PSD3 NDUFA4 SLIT1 USMG5 ALDOA RABAC1 ZBTB18 MDH1 BEX4 MAPK1 YWHAZ CREG2 FASN PEX5L BRK1 BEX2 COX6C NGFRAP1 YWHAB PRNP PSMD12 HK1 SCOC NCDN GPX4 CLTC VAMP2 TSPAN7 ITM2B REPS2 IQSEC1 TUBB2A MTPN RAN STMN1 SLC1A2 UQCRFS1 UBC SYT13 PFN2 HMGCR SERINC1 SYT5 RPL31 EIF4A2 SPOCK1 FKBP1A OPN3 SUMO3 ENSA DNAJC6 SMIM13 KIAA1045 PRKAR1B MPC2 NDUFA11 CTBP1 RPL38 MLLT11 TPI1 TOMM22 TMA7 ETS2 SNCA NEFM MPI NDRG3 GABARAPL2 BAD GNG2 TRIM35 MT-ND4L CALN1 RAB6B AC009014.3 RPS3A KIF5A MIF NAT8L CADPS2 FAIM2 TOLLIP ERH CTNNA2 APLP1 SCN1B EIF1AX ATP5A1 HS6ST3 ATP5G3 RPS15 STX1B BEX1 SPCS2 ABHD14A ATP1A1 TCEB1 PRDX2 WDR47 NDUFA13 MAP2K1 IPCEF1 NSF RPS27A ATXN10 OLFM1 NELL2 CPE KIF21A CDKN2D ATP1B1 MARCKS CAMKK2 PGRMC1 RPS28 CLSTN1 PAM RPL41 ATP6V1A PEG10 GNB1 CBLN4 FUNDC1 RPL13 CFL1 DCTN1 DYNC1I1 FXYD7 SLC6A17 CEND1 GUK1 GUCY1A3 SYT3 EGFL7 SH3GL2 MAP1A EDF1 BDNF SNCG TAC3 AES PKM RPL15 NGEF RPL26 PHYHIP APP VGF MMD BCL11B AK5 PPP2R4 COX7A2L RPL18A SLC25A22 PIN1 LANCL1 KRT17 MAPRE3 KLC1 TGOLN2 FAM84A SUB1 TOMM7 C19ORF53 MDH2 PRKCE DYNLRB1 HIGD1A KCNK1 CYC1 NUTF2 LMO4 ATP1A3 SCAND1 C2ORF47 CSDE1 TALDO1 WASF1 BSG CA11 PPARGC1A TCEAL7 DYNLL1 VWA1 GNG3 PTK2B RHBDD2 LRP1B MBOAT7 ARFGAP2 UQCRQ OXR1 COX6A1 MAP1LC3A MT-ND3 ERMN PGAM1 YJEFN3 TUBA4A MRPL12 JUND PRKAR1A YWHAH RAB2A PTPRT KRAS SEPW1 TBC1D15 PLS3 ASB13 RHEB CHCHD2 PI4KA UBE2M CDK5R1 NNAT SPTBN1 FAM219A PSMC5 TMEM155 GSG1L PRSS3 NPTX1 NPTXR SCD5 NDUFB4 VDAC1 ATP6V0E2 CAP2 PRDM8 THOC7 ATP6AP2 PSMC1 NUAK1 SOD1 PSMC3 MLF2 UBA52 TRIM36 PLCB1 BASP1 CYFIP2 RPL26L1 DSTN PIK3R1 PVRL1 PPM1A TRAPPC1 GHITM ATP6V1G2 ATP6V0C RP11-20I23.1 NUDT4 NGRN SYTL2 ESCO2 RAB3B ZNF385D\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "pyramidal neuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: CLU RTN1 TSPAN7 SNAP25 PRNP ENC1 GPM6A MT-CO3 CALM1 RTN4 CALM2 CHN1 ARPP19 MT-CO1 CCK LMO4 ATP2B2 PSAP SYT1 APLP1 PHYHIP TMEM59L HSP90AA1 MT-ND4 SERPINE2 CPE TSPYL1 NEGR1 PPP3CA PDP1 SARAF SLC12A5 NRGN GAPDH ITM2C TMX4 PEBP1 PREPL ATP1A3 MAP1B ARF1 SERPINI1 CLSTN1 TUBB2A THY1 ACTB NPTX1 UQCR11 SLC22A17 PACSIN1 BASP1 ATP2B4 ATP6V1E1 VSNL1 HSP90AB1 ATXN10 TUBA4A PLCB1 NAPB SOD1 SEZ6L2 MTRNR2L8 PGAM1 MT-ND5 SERINC3 BANF1 COX5B PCMT1 YWHAH CTNND2 NEFL RTN3 ENO2 SLC39A10 SYNPO GRIN2A ATP1A1 DIRAS2 NDRG4 ITM2B PEX5L TSC22D1 PPP2R1A LYNX1 SLC8A2 MTCH1 TCEB1 MT-ND1 ARL6IP1 FAIM2 GHITM CREG2 SERINC1 ATP1B1 YWHAG CADM2 TMA7 ANXA7 DPYSL2 MTRNR2L12 IPCEF1 RPL41 CLTC NRCAM PRKACB UQCRH PRDX5 STXBP1 PLD3 PSMA7 PTMA CLIP3 PNMAL1 PSD3 NDFIP1 ATP6AP2 TCEB2 CD63 TMEM130 CAPZA2 VAMP2 MT-ATP6 WBP11 CAMK4 SLC9A6 VSTM2L FAM174A DKK3 SLC17A7 CRYM COX4I1 APP UCHL1 ENOPH1 PPP3CB RGS4 ATP6V0C RNASEK-C17ORF49 IDS RP11-20I23.1 PPIA POLR2I NDUFS5 MRPL51 KCNK1 MIR6723 RXFP1 CCT5 NPTN ATP2A2 INSIG1 CAPNS1 SV2B GABARAPL2 RCAN2 LINGO1 CYFIP2 VPS35 PTPRN PRKAR1B TM2D3 USMG5 FBXL16 CISD1 BSN CCDC85B COA3 OLA1 ATP5J EXTL2 CAP2 SH3GL2 MAP1LC3A SELT RPL37A RHEB ATP6V0B CBLN4 DNAJB6 SCOC SEZ6L FAM134A RAP2A BEX2 C19ORF70 RAB11A PRKAR1A CA10 PIK3R1 PI4KA SUMO2 KCNV1 RAB3C RPS27A ADAM23 GDI1 TBR1 MT-CO2 AP2B1 BAD CAMKK2 PPP2R2C KCNAB2 EIF4A2 ANXA6 SYT11 SEPW1 DBNDD1 CALM3 MGST3 SSTR1 POMP NCEH1 C1ORF115 CDK17 DDAH1 ATP5G3 CFL1 CADM3 DPP6 PRPS1 NCAM2 GSKIP SULT4A1 YWHAZ SYT4 NKIRAS1 ITFG1 ATP9A ENSA C1ORF52 ZFAND5 CXXC4 FAM3C SPARCL1 HNRNPH2 YWHAB SCD5 NDUFA12 SNCA NDUFB10 BRK1 GABRA1 MORF4L1 LINC00116 HOPX HN1 SPTBN1 HAPLN4 MT-ND3 SNX3 IGFBP5 GRIN1 MTATP6P1 SCAMP5 TOMM70A UQCRC2 OPA1 GUK1 RAB3A IQSEC1 AC011043.1 TPD52 RPL35 GPX4 ARL1 ATP6V1A CTBP1 COX6B1 NDUFV1 GNG3 MAGEH1 RHBDD2 PRKCG ALDH5A1 DYNLRB1 ARL8A RPL21 LDB2 SIRPA NPTXR ELMO1 LAMTOR1 KCNA2 COPS8 REEP2 LMBRD2 PSMB7 KIF3C MAP1A DMTN CALB1 UBE2E3 AZIN1 SUB1 EPS15 UQCR10 LGALS1 CAMK2G EIF1AX FAM84A UBC TCEAL2 VDAC2 PPDPF ASAP2 CD99L2 PDE1A NDUFA4 HIGD1A DIRAS1 ATP5J2 GOT1 CD59 LAP3 BEX1 C16ORF13 MTRNR2L1 CIAPIN1 GPR158 PRKCB ALDOA PNMA2 ATP5A1 FBXL15 TUBB3 EPHB6 NCALD PEA15 UBE2N UQCRB TMSB10 SPON2 NOS2 PRDX3 NARS TRHDE LSM4 SCG2 APLP2 EFR3A TSPYL4 NECAB1 RPL39 RPS28 SPCS2 PKM ARF5 NELL2 ATP6V0D1 ATP6V1B2 JUN CDC37 OCIAD1 CKB ATP6AP1 STK39 MYO1G DYNLL1 MYRIP TAGLN3 TUBA1B C2ORF80 ATP5G1 SLIT1 NCBP2-AS2 UBL5 WSB2 GRPEL1 MAPK1 WFS1 PINK1 KLC1 ZNF365 TMEM70 SMIM13 ELAVL4 SCN3B MAST3 PTK2B MIF RPL6 C18ORF32 NSF RPL17-C18ORF32 PSMB3 GABARAP BSCL2 RPL26 IFI27 PLEKHD1 PCDHGA5 PCDHGA10 PCDHGA6\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "pyramidal neuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: CHN1 CCK MAP1B SNAP25 SYT1 MT-CO1 GPM6A UCHL1 CLU CALM2 HSP90AA1 RTN3 TUBA1B CALM1 VSNL1 SNCA FAIM2 BEX1 GDI1 PSAP DPYSL2 PRNP ENC1 COX17 RTN4 SPARCL1 THY1 STMN1 ATP6V1A SCAMP5 SNRPN TMSB10 BSN TUBA1A YWHAZ RTN1 SPOCK1 NRCAM AK5 MT-CO2 RPL41 NUAK1 MT-ND3 DNAJB9 SARAF CADM2 FTH1 HSP90AB1 RAB3A MT-ND4 TSPAN7 OAZ1 UQCRH ARL8B MAGED2 NDUFA1 MTRNR2L1 MT-CO3 ATP9A DYNLL1 ELAVL4 SERPINF1 NDUFB2 C12ORF57 PNKD WSB2 UQCRB CPLX2 BSG MAP2K1 TMSB4X RGS4 SYT11 SEPW1 TUBB2A AP1S1 GNB1 PKM SLC9A6 SV2B TOMM20 DYNLL2 CNTN1 CLSTN1 SLC7A1 RNF11 DKK3 PSMD2 ACTB RPL37A NEFL UBL5 ARL6IP1 BEX2 ATP2A2 VAMP2 APLP1 ATP1B1 LYNX1 GNG3 SLC38A1 NDUFB7 MORF4L1 ATP1A1 KCNAB2 YWHAG TOMM7 PREPL CFL1 GAPDH PNMA2 KLC1 NRGN ATP2B2 ELAVL2 TUBB4B EIF1AX PCMT1 CPE SPOCK2 SCN3B CYFIP2 RAB2A SNAP91 HS3ST2 TSPYL1 CHGB NDFIP1 PCDH17 ATP6AP2 EPHB6 SLC25A6 CMAS PEX5L ATP6V1E1 MAL2 PLD3 SCN1A TMEM35 PSD3 NBL1 SIRPA FXYD6 ITM2C TUBA4A RPL23A NDUFC2 FJX1 HPRT1 OLFM1 WBP2 ATP1A3 SNX10 ATP6V0B MRPL20 SLC22A17 MAP2K4 SQLE OPA1 ENO2 COX14 RPL35 ATP6AP1 RHBDD2 NDUFB1 C1ORF52 TCEAL3 GPR158 VDAC1 COX6C MT-ND1 GRIN2A AP3S1 CDKN2D GABARAPL2 NPTN KCNV1 MAP7D1 DYNLRB1 GHITM SPRYD3 SLC30A3 NDUFA8 MT-ND2 PHYHIP SLC6A17 SUB1 ATP6V0E2 NDUFA13 VPS35 ATOX1 CYB5R3 NEFH NDUFS5 BTNL9 DNAJC6 TMA7 FBXL16 TRIM37 TAGLN3 EIF4G2 DNM3 SEZ6L2 PGAM1 SYNGR3 CTBP1 EHD3 GPX4 NAPB YWHAH STMN3 APBB1 AP2M1 ARPP19 GAP43 UROD SOD1 ADCYAP1 C7ORF50 SSTR2 HK1 LMO4 PAFAH1B2 CADPS2 MORF4L2 ATP6V1C1 CYC1 DHCR24 RRM2B MBP TCEB2 PLCB1 RPL6 ANO3 VEGFA CBX6 LAMTOR2 PPP3CB C6ORF1 MYL6 RASL11B PSMA7 IDH3A NKIRAS1 MTCH1 CALM3 SELT C11ORF31 NDUFAF2 NHP2 ATRN YWHAB OXCT1 PI4KA ATP5G1 KLHDC3 SCD5 KIF3C UBE2V2 CERS6 AKAP12 ATP6V0C SMS TIMP2 PRDX5 NSF GSTO1 MRPL33 MAP1A RAB6B FASN LINC00116 DIRAS2 TMEM130 POLR3H CDK14 PHYHIPL RAPGEF5 EGFL7 ATP5B PRKCB LGALS1 TCEA2 TCEAL7 STMN2 PTK2B NREP C14ORF2 NDUFB3 TMEM59L ALDOA APP GALK1 MAST3 UQCR11 SERINC1 JOSD2 ACAT2 PEBP1 PGRMC1 LRP1B APOD SERP2 PPP3CA ANXA6 TMX4 SYNJ1 MT-CYB NDUFA2 GABRA1 COX6A1 MZT2B TBR1 SYNPR SLIT1 NRF1 RPL12 PSMD12 NGFRAP1 EIF1 SNN ZBTB18 SUMO3 LINC00086 ACTR6 RP11-20I23.1 PDE1A MAPRE3 TCEAL2 STMN4 RLIM RORB BEX4 RPL36A KIF5A NDRG4 CFL2 USMG5 PACSIN1 ATP6V1B2 GORASP2 NOV STX1A SLC25A5 WASL AKR1C2 SYNGR1 NARS C1ORF115 SKP1 CNP FAM198B KIF1A NAPA PFN2 CMPK1 PMP2 SNCB ARL8A GOT1 SEMA5A STXBP1 RHEB NWD2 PTPRN GABARAPL1 OTOA SLC24A2 FXYD7 TKT RPS28 ARL6IP5 RPH3A NEK7 IDS BSCL2 RNASEK-C17ORF49 RPL13A RPL17-C18ORF32 RPL17 DNAJC21 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "pyramidal neuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 SYT1 CHN1 SNAP25 MT-CO3 RTN3 RTN4 MAP1B PRKACB CALM2 TMSB10 CALM1 NAPB CLSTN1 ENC1 RTN1 GPM6A PRNP CLU NEFL MT-ND4 SERINC1 FTH1 CPE PSD3 SLC17A7 ITM2B FAIM2 STMN1 TMSB4X PSAP HSP90AB1 MT-ND3 SYN2 ATP1B1 VAMP2 MT-CYB MT-CO2 MT-ATP6 TUBA1B THY1 NECAB1 SPARCL1 CALM3 MT-ND2 NRGN DPYSL2 ARPP19 PRKCB PKM YWHAH UCHL1 SNX10 SEPW1 EIF4A2 RP11-20I23.1 ATP6V0C CADM2 TMX4 SYT11 ATP6V1B2 TUBA1A NGFRAP1 KIF1A GDI1 TUBB2A CCK ACTB CDK14 SERPINI1 VSNL1 OAZ1 FXYD6 HMP19 ACTG1 SLC39A10 NDFIP1 ATP2B2 PHYHIP ATP1A1 ATP1A3 CHL1 NEGR1 SERF2 DKK3 SNCA DNAJC5 SARAF GABARAPL1 CKB MTCH1 HSP90AA1 BASP1 SCAMP5 GNG3 NDRG4 LMO4 YWHAG APLP1 SNRPN ARF1 PRKAR1A CTSD STXBP1 SYT4 SCN3B ATP6V1A FAM3C SPOCK2 MTRNR2L1 GAPDH PPP2R2C DYNLL1 IDS RAB3C HPRT1 SKP1 PSMC5 BEX1 DCLK1 APLP2 STMN2 PREPL PGM2L1 TGOLN2 SYN1 RASGRP1 FAT3 APP AP2B1 CDK5R1 TSPAN7 AP2M1 OLFM1 TMEM59L SLC6A17 RAN LMBRD2 MT-ND1 ITFG1 ENO2 KIF5A ATP6V0D1 ELAVL4 RABAC1 TOMM20 NGRN PAK1 PET100 SYNGR1 CRYM ATP2B4 KCNMB4 PPP2R4 SV2B GRIN2A SH3GL2 FXYD7 CDH8 TPPP ARL6IP5 PCP4 NRCAM CADM3 BSG MTPN SCD5 KLC1 ARL6IP1 STMN3 NUAK1 RAB6B LDHB TSC22D1 CFL1 ARL8B SYNJ1 PTPRN RFK PLCB1 CAP2 DIRAS2 PEX5L TCEA2 SERINC3 NREP SOD1 RAB6A GABRA1 NEFM PJA2 CNTN1 ELAVL2 OCIAD1 PDP1 PPP3CA NSF PTPRN2 GAP43 COX6B1 PLD3 GDA C11ORF31 SNCG CAMKK2 PIN1 FTL NCDN CABP1 B3GNT1 COX7C EGFL7 PEBP1 SCG2 PARM1 SELT BEX2 UQCRH C6ORF1 MYEOV2 UQCRQ ATP6AP2 CTNNA2 NAP1L2 CX3CL1 CDKN2D SPTBN1 ATP6AP1 TALDO1 CLSTN2 SCOC NAP1L3 NDUFA1 NPTN LANCL1 CYFIP2 ATP6V0B DYNLRB1 SLC12A5 RPL23A GRIN1 NRN1 PNMA2 TOLLIP VPS35 MORF4L1 SUB1 ENSA PIK3R1 PGAM1 RPL35 SULT4A1 HMGCS1 PFN2 KCNC2 SLC24A2 ALDOA KIFAP3 C14ORF2 BCAP31 NDUFB11 NARS SLC22A17 OPRM1 TMEM130 PNMAL1 ZBTB18 PI4KA DNAJB6 NPTX1 ATP5E CA10 WSB2 RPS28 RPL11 ATP5B RPL41 SIRPA SLC9A6 ANXA7 PPM1A GUCY1B3 PTK2B TPI1 SNN CREG2 PPP2CB EIF1AX NCEH1 GHITM DPP6 NUDT4 ASAP1 WBSCR17 RPL38 CMAS MT-ND4L EHD3 PPIA CAMK2G EFR3A HPCA PCSK1 MZT2B PELI3 CA11 SPOCK1 SLIT1 PVRL1 RAB11A PLCXD3 NOV MLF2 AK5 ERH GNAQ YWHAB CTXN1 PTGES3 RPL36A SLC25A22 MAPRE2 HS6ST2 C14ORF132 TCEAL2 SNAP91 RPL32 EGR1 ABHD8 C18ORF32 UBL5 HTR2A VDAC2 PTMA NGEF LPPR4 MAOB TBCB ARHGDIA NDUFA13 PPDPF NDFIP2 KIF21A EPS15 BAALC C7ORF50 DPY19L1 COX6A1 GOT1 CD99L2 BLOC1S1 RPL31 SLC38A1 TUBA4A TSPYL4 POLR2I CAPZA2 GSK3A NELL2 NAP1L5 RNF208 TIMP2 CXXC4 TPT1 NHP2L1 TSPYL1 MAPK1 ATP9A UBE2QL1 KCNA1 ATP6V1C1 HK1 SPRYD3 PEG10 GNB1 DNAJC6 CD59 IPCEF1 TCEAL7 AP1S1 CLDND1 PPP2CA VSTM2L HINT1 UBE2M UBE2V2 BSN RPS15 NDRG3 FKBP8 TMA7 ATP2A2 BAI2 BRK1 SPCS2 LYSMD2 RGS4 PRKAR1B LINGO1 RPS3A CRIM1 HMGCR SRP14 IDI1 BAG4 GABARAPL2 ACP1 EDF1 PTPRS LAGE3 TUBB3 ATP6V1E1 D4S234E PPP1R9B CBX6 RPL13 SMIM13 USMG5 CAMK4 CTNND2 EIF4G2 DNM3 NCALD AP3S1 NHP2 GMFB MDH1 UBQLN2 RPL26 GABARAP CERS6 CLTC CDS1 BNIP3 RP11-195F19.5 BEX5 FAM127A NDUFC2 NPTXR KIF3C ETS2 OAT WASF1 NAT8L TUBB4B COX7A2L IDH3A NDUFB7 ACTR10 PRUNE2 SH3BGRL2 TMOD2 SNCB ETV1 RNASEK-C17ORF49 MTRNR2L6 MTND1P23 SCN2B FAM134A ZNF365 ACTR1A PRDM8 OXCT1 SEC61G VDAC1 NDUFS6 PDE1A MCHR2 CISD1 COPRS RAB1A EFHD2 PSMD12 AKAP12 FBXL15 MPI C9ORF16 DNAJB9 POMP PPP2R1A TUSC2 CYC1 CNTROB RAB27B RPL15 PPP3R1 DNAJA1 MAGEH1 RCAN2 SLC8A2 SEZ6L2 PAM ACOT7 C19ORF53 SYT13 YWHAZ MYL12B NCOA4 ATP5F1 C19ORF43 PCDH17 GPR26 NTNG2 ARHGDIG NMNAT2 SQLE ZNF574 PLS3 POLR2L MPPED1 ARL2BP RPS5 EID1 CMPK1 NTN4 YJEFN3 C1ORF95 RPL8 COPS7A SMIM12 RPS27A UQCRC1 CLPTM1 DSTN GOT2 GUK1 TSHZ2 FSTL5 BSCL2 TWIST1 HSPE1 C3ORF80 ARF3 LDOC1 MRPL47 TLN2 CFL2 HDLBP SUMO3 SSTR1 BEX4 ALDOC OST4 RAPGEF5 PACSIN1 CLIP2 C1ORF233 ARPC4 MAP1A ASB13 CDK17 RPL18A KIAA1045 MT3 VSTM2A CACNB1 ATG101 MYL6 YIPF3 BTBD1 RAMP1 SLC7A5 SMS ADCYAP1 KCNAB1 MRFAP1 PTPN20A TRHDE CHMP4B PGRMC1 TENM3 DCTN1 PSMB7 SYT17 NBL1 NDUFB8 PRPS1 RRAGA DIRAS1 CDK5R2 PCMT1 CEND1 KCNV1 COX7A2 MAP1LC3B SDHAF1 TMEM147 DNER RPL7 ELOVL7 ZNF880 SYNPR USP5 NNAT YWHAQ VDAC3 KLHDC3 ENO1 MARCKSL1 HOMER1 FRMPD2 CHMP5 SUCLA2 STX1A SMYD2 GRM3 SDCBP CCDC115 WDR47 TMEM70 EIF1 POLR2M TMEM155 PMEPA1 KLF10 DUSP6 PAQR8 IFI6 WARS ANAPC11 PEA15 CAPZB PGK1 SAP18 PINK1 RHOB EPHB6 AHNAK2 ATP6V1G1 EPHB1 CD63 HCN1 RPL39 ELTD1 GORASP2 NDUFA4 SEZ6 DYNLT3 CSDE1 ARL8A PCDH19 SEPT4 SSBP3 RAB7A UQCRB MDH2 SLC30A3 TPD52 CNTNAP5 REEP5 FSCN1 TRAPPC1 ITM2C SUMO1 OTOA FARSA CYCS RBX1 MZT1 F8 INPP5F FBXW11 UBE2N UBE2D2 ABHD14A MAP2K1 HOPX NFE2L1 SYTL2 BEND5 MRPL37 PAQR9 C1QBP ATP6V1G2 RHEB IQSEC1 OPCML GABRA5 UBA1 MIF ATP5J2 PCSK1N MFSD6 UQCRFS1 OPA1 MTRNR2L12 OLFM2 AP2S1 TMEM65 TXNDC17 CNR1 HIGD1A NDUFA11 NDUFA8 MAP2K4 ARFGAP2 MGST3 C1D KCNK1 RASGRF1 BAD DDAH1 RAB2A RHBDD2 TMEM151A TMEM150C RNF11 NME1 FJX1 RPS10 TKT NRSN2 ARL4C TM6SF1 SNX3 RPL21 UBL4A ATOX1 THOC7 MFN2 COA3 APBB1 BTBD10 CORO2B CYP26B1 HIST1H2AC RP11-219A15.1 MYRIP YAF2 CRYAB LINC00086 PTPRT NDUFAB1 LHFP RPS19BP1 UBB RPL37A HS6ST3 TXLNB CPNE8 SNX17 CLIP3 UQCR11 ATP5I FBXL16 TUBB4A GSTO1 ATP6V0E2 FAM19A1 SYNPO COPE MAP2K2 SEZ6L ATPAF1 OXR1 MAPRE3 MED10 OPN3 TMEM200C ISCA1 HSPA4 RAB40B WBP2 KCNAB2 FAM163B STMN4 NDUFS5 PPP3CB COX5B PSMA7 CHCHD2 RPL17 NEFH IGSF21 GPX4 CDC42SE2 NDUFAF3 CCDC85B PSMB5 CHP1 CDH7 EXTL2 REEP2 ABCC12 STX1B IMMP1L MRPL15 MT-ND5 ARL4D PRDX3 UQCRC2 FIS1 JUND MAP4 EIF5A2 HSPA8 CADPS2 ROBO2 TUBB PCDHA10 PCDHA4 PCDHA9 PCDHAC1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "pyramidal neuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MAP1B SYT1 SNAP25 CHN1 CALM2 MT-CO3 NRGN MT-CO2 VSNL1 CLU RTN3 CALM1 TUBA1B ATP1B1 SPARCL1 RTN4 PKM RTN1 MT-ND4 MT-ND2 CALM3 CLSTN1 GAPDH HSP90AA1 NEFL MTRNR2L12 THY1 FAIM2 ATP1A1 MTRNR2L8 PSAP ACTB NDRG4 NAT8L BASP1 UCHL1 MT-CYB CKB NEFM TPI1 CCK NAPB MTRNR2L1 VAMP2 SULT4A1 FTH1 ATP6V1B2 NEFH PJA2 TMX4 ATP2B2 TUBA4A ENC1 GPM6A YWHAG ATP2A2 SLC24A2 GAP43 MT-ATP6 SNRPN VAMP1 RGS4 STMN2 OLFM1 DCLK1 SLC22A17 SLC17A7 TSPAN7 PPP3CA NPTN TSC22D1 ARL6IP1 NDFIP1 SPOCK2 SLC12A5 GDI1 TMSB10 YWHAH HSP90AB1 TMSB4X PGAM1 APP SV2B OAZ1 YWHAZ VDAC3 MT-ND1 PEBP1 DKK3 EPDR1 PRKACB KIF1A SERINC3 NGFRAP1 EIF4G2 DPYSL2 GABRA1 PTPRN MYL6 LYNX1 CADM3 CABP1 ITM2C NDUFA4 DYNLL2 NARS MAP1A OCIAD1 CAP2 YWHAB SERINC1 HINT1 ARL6IP5 ENO2 KCNAB2 MTATP6P1 SPOCK1 ATP1A3 RAB3A ZFAND5 RHEB NUAK1 ADAM23 TCEB2 NSF EID1 PREPL CPE SCN1A OXR1 SNCG PPP3CB PRKAR1B SNCA GABARAPL1 ARPP19 APLP2 STMN3 CSDE1 NCEH1 SNX3 STXBP1 SYT11 CADM2 COX6A1 ACTG1 NUDT4 ETS2 SEPW1 WDR47 UBB EIF1 SIRPA EFR3A CPLX1 LMO4 ATP6V1C1 TSPYL1 CPLX2 STMN1 PIK3R1 PAK1 NGRN MAP2K1 RCAN2 FLOT2 DNAJB6 SNCB ATP5B SCAMP5 NRCAM SYT4 CAMK2G NECAB1 KCNC2 LGALS1 EIF1AX TMA7 NEGR1 NCDN DYNLL1 RNF11 COX4I1 DIRAS2 PI4KA MAP2K4 SUB1 SARAF ATP9A BSN TM6SF1 PFN2 TAGLN3 FAM84A FKBP1A SYNGR1 PRKCB BNIP3 CFL1 SKP1 PTMA SLC39A10 PPP2R1A SMIM13 PTK2B BEX2 PSD3 IDS ARF1 COX7C SPTBN1 BAI2 TMEM130 USMG5 OPCML UQCRH EIF4A2 CNTN1 NAP1L3 APLP1 SCN4B ARF3 TMEM155 PNMAL2 KLC1 FAM3C ARF5 CDS1 SYN2 MAPRE3 ATP5G1 NUDT21 GRIN2A MIR6723 CYFIP2 LMBRD2 CREG2 CAPZA2 PRKCE ISCU CAPZB SSBP3 ATP6AP2 SEZ6L2 SLC38A1 FXYD6 PPP2CB NDUFA5 IGSF21 GABARAP UBL5 EFHD2 PLCB1 CDC42SE2 SLC25A6 WBP2 DNAJC6 PHYHIP RAB7A NHP2L1 WBSCR17 PRDX5 LAMP5 RHBDD2 TMEM150C FTL PNKD RBX1 ZBTB18 DSTN SYT13 PPP2R2C SLC17A6 POLR2L LGI3 SPCS2 BSG ANXA6 HSPA8 SLC9A1 SNRPE FGF12 LDB2 RAB6B ATP6V1A PRNP AK5 NAP1L5 TRIM37 SCN1B ARHGAP35 RAB3C MT-ND5 PGM2L1 PDP1 SOD1 BEX1 NRN1 GPX4 MAPRE2 SRP14 TMOD2 INA TUBB2A SNX10 RPL37A TBCA CISD1 RPL38 IPCEF1 PCP4 NMNAT2 UQCR10 CDKN2D RPS28 IQSEC1 PNMA2 NGEF ELAVL2 NDUFA13 MT-ND3 ATP6V1E1 RP11-20I23.1 MTRNR2L6 ATP6V0C BTBD1 NDUFC1 ZMAT2 PCSK1N SUMO2 HSPB1 ALDOC C1ORF115 LDHB PRDM8 KIAA1045 RPS15 CLTC CACNB1 PSMD2 PFDN4 GABARAPL2 C6ORF1 CTSD CDCA7L HCN1 FAM131B TOMM34 ENO1 RAB2A SYN1 FBXL16 ARHGDIG EDF1 CDK5R1 SLC1A2 GNAQ MGST3 MAPK8IP2 FARSA BEX5 VSTM2A ENSA ATP5J CAB39 CDK5 KCNA1 CTXN1 PHYHIPL PCGF1 WASF1 PTGES3 SNAP91 PPIA STUB1 TPRG1L AP2S1 MRFAP1 COX7A2 WSB2 UBC RPS5 UBE2QL1 PDE1A PLD3 TOMM20 HMGCS1 INPP5F UQCRB HMP19 CBX6 ATP5J2 COX8A D4S234E GNB1 GNG3 MAPK1 COX5B SH3GL2 PACSIN1 CCDC124 SYTL2 PIN1 TOLLIP WASL PRKAR1A TCEAL2 FAM163B NAPA ARPC4 C11ORF31 UROS ARL8B DCTN3 MAST3 UBL4A KCNF1 EGR1 MLF2 GUCY1B3 UQCRC1 ARPC5L SCN2B MORF4L2 TPT1 PCDHB4 PPP2CA OAT MRPS21 RPH3A OPRM1 CMAS S100A6 BTBD10 ATP5I MAL2 TMEM35 SCD5 SPP1 SNN PCBP1 CEND1 ATP6V1G1 CERS6 C14ORF2 SERPINI1 ZNF365 NAP1L2 SLC6A17 KCNA2 KIF21A DYNLRB1 SLC25A4 BAALC GPX1 NDUFA1 RPL13 NRAS FKBP8 NDUFAB1 BEX4 PGK1 AKAP12 MAP2K2 SH3BGRL2 ATG9B MYEOV2 TLN2 CRIP2 NEUROD2 SV2C DUSP6 FAM198B OPRK1 RNF181 DIRAS1 RPL12 EDIL3 TMEM65 FNDC4 TCEB1 RAD23B PCDH8 UHMK1 KLHL12 PTPRM NPTXR PFN1 NDUFS6 ENPP2 IDH3A PPP3R1 DBNDD1 RAPGEF5 SOSTDC1 VDAC1 BANF1 COX5A CLIP3 SLC7A8 PSENEN TRAPPC1 CHP1 SLC9A6 PDZRN4 CD99L2 FAM96B CHAC2 B3GNT1 DNER SLC30A3 LAMTOR5 RHOB TSHZ2 NDFIP2 F8 RPL15 SYT2 ETFB GPCPD1 TESPA1 ATP6V1F KIF5A ANK1 WFS1 GPX3 REEP2 SLC2A1 PSMD8 CAMKK2 HIGD1A MT-ND4L STXBP6 RASGRP1 PTGDS HTR2A LINGO1 PGRMC1 PFKP PPTC7 FIS1 TMEM14A PPDPF ATP6V0B PITPNA TUBA1A TSPYL4 CYSTM1 PEX5L PELI3 PPP2R4 LRRC59 GSKIP DNAJC4 NDUFA2 LYSMD2 SLC7A1 UQCRFS1 COPS8 RPL18A TBCB EGFL7 PLP1 ELAVL4 MRPL33 TM2D3 PEG10 AQP4 DLD ISCA1 C1QBP TRIM47 FAM127A HN1 CHMP4B ABRACL EXTL2 PSMD12 GSTT1 TMEM59L NPTX1 ATP2B4 TPD52 KCNV1 CHL1 HPRT1 NDN ITFG1 HDLBP PRKCG TEX2 SERPINE2 GSTP1 HNRNPH2 CDH22 RANBP1 CAPNS1 PITHD1 USP5 ALDOA CCDC85B ACOT7 LIMK1 COX7A2L KIFAP3 IFI6 RASGRF1 SH3RF1 ITM2B PPP1CB PFDN1 C2ORF80 POLR3H C1ORF233 PAQR9 MAP7D2 ASAP1 NDUFB1 PPM1A POMP DNAJC5 MFN2 CYCS MDH1 UBQLN2 TPGS2 ERH RPL31 CCDC115 CD59 TCEAL7 RAP2A CCT5 ARL4D CETN2 KCNC3 TGOLN2 RORB OPA1 RAN TUBB3 PAMR1 CADPS2 RTN4R ARHGDIA OXCT1 SCOC DNAJA1 MAP1LC3A LMO3 TMSB4XP4 MAGED1 SNX22 HDDC2 AP2M1 GMFB PNMA1 CDK14 CIAPIN1 STX1A TKT EGR3 TSPYL5 UBE2E3 MTCH1 LINC00116 NDUFB4 SERPINF1 ACTR6 RPL32 TRIM36 NHP2 NEXN MMD PLS3 TBC1D7 VDAC2 ATP6V1G2 CNDP1 WARS HOMER1 RPL17 TBR1 GOT2 COPG1 SUCLA2 CLIP2 MAP4 OR6D1P JUND GFRA2 ADSS SDCBP SYNJ1 HEY1 YAF2 SCG2 COMTD1 PIP5K1B MAP1LC3B SAP18 RAB11A FKBP4 GRIN1 SLC8A2 ARL8A CLTA EHD3 NIPA1 LINC00086 ALDH5A1 CFL2 SRM NEUROD6 NPTX2 ANKRD18A MPC2 C9ORF16 EMCN CHMP5 TUSC2 NDUFB3 BCAP31 RPL39 UQCR11 PCMT1 ADD2 ESYT1 FAT3 PSMB7 MRPL15 RFK KCNK1 AP1S1 SPRYD3 GHITM CHGB CKS2 PTPRN2 DYNC1I1 GSK3A MFSD6 PHB MPPED1 MT3 ASNA1 NDUFB7 CNP GRINA C19ORF10 NELL2 ATP5F1 PPP2R2B CDK5R2 PSMA7 PCYT2 FABP3 EPHB6 COQ10B EEF1A2 ID2 HK1 COTL1 FABP5 NDUFV1 COL25A1 KLHDC3 VPS35 DHCR24 RPS2 DNM3 H2AFZ RAB4A SKAP2 VGF NDUFB5 MORF4L1 MZT2B C19ORF70 KCNH5 ARFGAP2 BCAS2 RPL26 C7ORF50 RRS1 BCAT1 NRIP3 TMEM147 EPB41L3 PRPS1 PRUNE2 C12ORF49 SERP2 FAM219A SELT NDUFS5 CLDND1 MYL6B ATP6AP1 CYB5R3 NDUFB2 RSL24D1 MSMO1 SUMO1 GLO1 FSCN1 TUBB4B SYNGR3 UBE2V2 NCOA4 LZTS1 NCAM2 RNASEK-C17ORF49 BSCL2 RPL41 TMEM191A RPL21 TF MIF PCDHGA5 PCDHGA10 PCDHGA6\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "pyramidal neuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SNAP25 SPARCL1 SYT1 STMN1 ARPP19 APP GAPDH PSAP SEPW1 CFL1 RTN4 CHN1 HSP90AA1 APLP1 COX7C MAP1B TUBB2A PKM CCK PRNP ENO2 CLU NRGN SARAF DIRAS2 CADM2 ARL6IP1 PPP3CA ATP2B4 SERINC1 BSG VSNL1 SYNJ1 MT-CO3 MT-ND4 PLD3 EFHD2 APLP2 GRIN1 FAT3 RPS3A CKB PCSK1N CALM2 HSP90AB1 GHITM EGFL7 NRCAM ARPC5L SYT4 ITM2C CDH13 ATP6AP2 PPP3R1 SCD5 NCALD PRKCB NGFRAP1 TUBA1B MFSD6 NEFL OLFM1 HS3ST5 ATP1B1 PTPRN CALM3 EIF1AX NDUFB2 RBX1 TMEM59L CALM1 CHMP4B EIF4A2 NCDN MT-CO1 NCEH1 YWHAH SUSD4 ISCU NPTN PGAM1 GABRA1 RNASEK-C17ORF49 MPPED1 UBE2N SLC22A17 PCMT1 ARF3 TCEB1 GADD45GIP1 HSPA8 UBA1 RPL7 NIPA1 TGOLN2 ATP1A1 IGFBP2 TBCB PLEKHH2 ATP2A2 ABHD8 RAN CDC42SE2 SYT11 EFR3A CA11 SYNGR3 TRMT112 ITFG1 COX8A IDI1 MAPK8IP2 DIRAS1 PCDH19 OXR1 PTMA MRPL47 EID1 PEX5L RPL13 TIMP2 SIRPA UHMK1 SCG2 UQCRH RAB3A TMEM160 KIF5A ENC1 PTPRS EHD3 PIK3R1 FXYD6 RGS4 CLSTN1 PRKACB ATP1A3 C19ORF70 THOC7 FAM127A ATP5F1 PFN2 ARL6IP5 ATP5B MAPK1 KCNAB2 ATP6V0B DSTN DMTN WASF1 LSM4 HPRT1 MAST3 KIF1A RAB2A PELI3 IQSEC1 RPL39 ATP2B2 BRINP3 PPM1A NCAM2 NUAK1 NAPB RNF11 NDUFB1 RPL35 SCN3B ATP6V1A BAI2 EIF4G2 GPR26 GLIPR1 ZBTB18 STMN2 FKBP1A IDS MYL12B COPE TCEA2 PPP3CB GDA ATP6V1E1 UCHL1 PJA2 PCBP1 SLC38A1 STMN4 SLC6A17 MT-ND3 IDH3A TMA7 RTN1 TOLLIP PRDX1 MDH1 KCNA1 PNMA2 SUMO2 GAP43 MAP1A CISD1 ATP5J CLTB SERPINI1 MTRNR2L1 STX1A MGST3 MBP GPCPD1 AURKAIP1 TMSB4X CLIP3 NDUFA4 DNAJC5 DNAJB6 PSMB5 SNX10 CPE OPCML TPI1 ATP5H KCNK1 TCEB2 TPPP SOD1 TLN2 SERPINF1 TESPA1 CORO2B JAKMIP1 CLTC ATP6AP1 SLC39A10 PCDH17 TMSB10 UQCRC1 GDI1 ADD2 ACTB AP1S1 CD63 MORF4L1 UQCR10 TSPYL1 HSPE1 PHYHIP TSC22D1 DYNLT3 CD59 ARL2BP SLC24A2 COX5A HNRNPH2 ATP5G2 MAGED1 ATP5J2 RTN3 CADPS2 RPL41 ARF1 RPL3 MAP4 RP11-664H7.2 CADM3 LYNX1 KCNC2 NHP2L1 TPD52 ZCCHC17 CAP2 MANBAL RHBDD2 BEX1 PFKP SNCA ALDOA PSMB3 RPS28 NSF B2M NDUFA13 MTRNR2L6\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "pyramidal neuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO2 MT-CO1 SNAP25 SYT1 SV2B YWHAG MT-ND2 CHN1 CALM2 ACTB CCK MT-ND4 LMO4 RTN4 NPTX1 MT-CYB MAP1B SPARCL1 AES HSP90AA1 ATP6V1A SLC24A2 PJA2 MT-CO3 GPM6A SLC17A7 ZNF385D APP RTN3 NDRG4 MT-ATP6 SYN2 PSAP CLU RTN1 PRKCB NRGN CD99L2 PEA15 ATP2B2 MORF4L2 VPS35 PKM PI4KA MTRNR2L1 RAB3A MFSD6 CALM3 TBR1 ITM2B SYT11 MT-ND3 TMSB10 PPP3CA FIS1 OLFM1 P2RX6P FTH1 PRNP TSC22D1 DYNLL1 GDI1 KIF21A RHBDD2 STMN3 ARL6IP1 YWHAB NBL1 LINGO1 GRIN1 ATP9A VSNL1 FBXL16 PRKCE KCNAB2 ITFG1 MTATP6P1 FXYD6 APLP1 CHGB SCN3B ETV1 CFL1 KLC1 PTGES3 EFHD2 FAIM2 SYN1 PTPRS FTL SSBP3 WFS1 JUND NEFL TCEAL7 GOT2 WDR47 KCNAB1 NPTXR RRAGA ATP2B4 KCNMB4 BEX5 CHL1 NPTN TMEM59L PRKAR1B BTNL9 ZFAND5 UBB PGM2L1 TOMM20 EIF1AX TKT ATP6AP2 DYNLL2 AP2B1 DNAJB9 MAST3 STX1A NEGR1 ACP1 ADAM23 THY1 MMP24-AS1 VAMP2 SCOC SLC9A6 CCT5 NRCAM PRPH2 H2AFZ GRIN2A GDA ARPC4 NWD2 KL UCHL1 YWHAH SLC39A10 SCN1A SNCA SEZ6L2 UROS CPLX1 NECAB1 CLTC SERP2 PRDX3 OPN3 CX3CL1 WASL CTXN1 FKBP8 TSPYL4 SNX10 SNX17 SLC38A1 SCD5 NELL1 TMEM14A CADM2 CLTA CRIM1 TESPA1 IPCEF1 KCNK1 NUDT4 OPRM1 STXBP1 CDKN2D RHEB WBP11 SYNJ1 PTPRT ITM2C SUB1 TAGLN3 PSD3 RNF208 ENC1 MAPK1 SKP1 NCDN VDAC3 ARHGDIA NDUFA11 RPL41 LIMK1 CNTN1 BSN PPP3CB NDFIP1 HDDC2 RPL13 UQCRC1 PSMC3 SLITRK1 RLIM CAMK4 ABHD14A TUBB4A MT-ND1 GUK1 ATP6AP1 NCEH1 GPCPD1 CALM1 CTGF CTSD CD59 PSMD12 OLA1 CAMKK2 VGF SERINC1 DNAJC6 CEND1 RPS6 TMSB4X ATP1A3 ERH GPX4 CKB ACTG1 RPL18A JAKMIP1 COX7C ARL6IP5 NCALD STMN1 TMEM230 PANX1 SLC22A17 APLP2 ATP1B1 NGFRAP1 WBP2 PGK1 ATP1A1 SYT5 CA10 TUBB2A MAL2 NDUFC1 BCAP31 DPYSL2 PVRL1 FABP5 NAPB MYO10 SLC12A5 CLSTN2 RFK SCG2 SULT4A1 NPTX2 HMGCS1 REEP2 CCDC85B THOC7 STK39 CMAS ENO2 HS3ST5 RPL26 PFKP MAP7D2 TMEM155 SLC25A5 MAP2K4 YWHAQ WBSCR17 QDPR NDUFB5 LMBRD2 NELL2 PGAM1 GAPDH MORF4L1 LMO3 ATP6V0C MTRNR2L6 RP11-20I23.1 DNAJC21 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "pyramidal neuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: CHN1 ENC1 MT-CO1 ATP1B1 TMSB4X ITM2B CLU PDP1 MTRNR2L1 FTH1 LYNX1 RGS4 SARAF MAP1B SNAP25 YWHAH TMSB10 CALM3 GPM6A CCK GDI1 CPE VSNL1 PHPT1 SEPW1 GPX4 RAB3A KIF21A SCAMP5 ID2 MT-CO2 TUBA1A SYT1 GAPDH KCNAB2 PGM2L1 GNAQ CNTN1 KLHDC3 CEND1 GSTO1 PPP2R2B C14ORF2 THY1 NRCAM PHYHIP TBCA EIF4A2 TMA7 YWHAB PSMA7 DPP6 SYNGR1 ARPP19 RTN3 SPARCL1 NELL2 STXBP1 HINT1 COX6A1 DPYSL2 CDK5R1 CALM1 APP ATP2B2 NEFH MAST3 PEBP1 HSP90AB1 STMN1 NEUROD6 SMS RPL13A ATP1A1 UROS NDUFB1 KCNC3 RPL32 SERINC1 CHP1 TSPAN7 YWHAG NDRG4 OAZ1 RAB6B TOLLIP ATP1A3 RPL39 AHNAK2 LMO4 PLCB1 C19ORF70 ATXN10 NDUFA5 APLP2 NRAS SYT11 SLC22A17 ENO2 C12ORF49 USMG5 ATP2A2 SYNGR3 TGOLN2 MAP1A NPTXR PSMC3 RPL18A DNAJC5 GMFB KLC2 FTL ASAP1 UCHL1 CDK5R2 TIMP2 CA11 LINGO1 FAM134A SYNPO SLC12A5 AP2M1 SLC17A7 GABRA5 UBC CTSD NRGN NGFRAP1 SNX10 NPTX1 ARF3 ADAMTS1 PRKCE KIAA1045 SQLE DGUOK SYN2 PSMD8 TCEAL2 CERS6 SNN ATP5B OPRM1 OPCML NDUFA13 PSENEN CARTPT PRNP SUMO2 APLP1 NPTN HCN1 EDIL3 MYRIP WASF1 KIF1A SLITRK1 CYCS TPD52 PLD3 NCOA4 DNM3 LRP1B CHGB OLFM1 ARF1 IDS CD59 CAMK2N2 KCNV1 COX7B HSPE1 MAPRE3 CDK5 ROBO2 PIP5K1B CA10 SRP9 SLC38A1 PSMD2 SPTBN1 PAFAH1B2 ATP5J GHITM MSMO1 COA3 EXTL2 ASNA1 QDPR RPL38 YIPF3 TPI1 DNAJC6 MT-CO3 CREG2 DYNLL1 HSP90AA1 SYT13 PPP3CA CHCHD2 BIRC5 JUND SYT4 PPP2CB NAPB CFL2 DNAJA1 BEX1 GRIN2A PSD3 MAPK8IP2 DKK3 ALDOA MYL6 MLLT11 SLC39A10 TMEM70 GOT1 TUBB4B C1ORF52 ATP6V1G1 CRIP2 WARS ETS2 KCNC2 STMN4 CAPZB EID1 SYNJ1 BEX2 FAM19A1 ZNF174 PPP3R1 FBXW11 SLC8A2 TSC22D1 NDUFA4 NAT8L FAM127A DYNC1I1 CCDC68 SNCA ATP5E NUAK1 SPCS2 SERPINF1 MRPL51 RPL13 UBE2N CTXN1 NDUFAF3 VAMP2 CADM3 WBSCR17 CX3CL1 NUTF2 ALDOC ATP6V0C RP11-20I23.1 MTRNR2L6 GTF2H2C_2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "pyramidal neuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-CO3 MT-CO2 MT-ND4 MT-ND3 MT-CYB MT-ATP6 MT-ND1 MT-ND2 MAP1B CHN1 MTRNR2L1 SNAP25 MTRNR2L12 ATP1B1 CALM2 RGS4 RTN3 VSNL1 TUBA1B CALM1 EIF4A2 SYT1 CALM3 RTN1 PRKCB RTN4 NDFIP1 NRGN TMSB4X ARPP19 PNMA2 FTH1 GAPDH GDI1 PRKACB YWHAH TUBA1A YWHAG DYNLL1 NEFL ATP2A2 PSAP GRIN2A MT-ND5 PEX5L MTRNR2L8 CKB INPP5F STMN2 BEX1 KIF1A PCMT1 OAZ1 ZFAND5 PSD3 PEBP1 ALDOC ACTG1 ZBTB18 GPM6A SNRPN ATP9A SNX10 NAPB ATP5I ACTB CTBP1 MTATP6P1 TMX4 THY1 DNAJC6 CFL1 UQCRH TOMM7 YWHAB TSPYL1 MAP1A SEPW1 LANCL1 ATP1A3 EFR3A HMP19 COX6C COX6A1 NGFRAP1 ATP5B PREPL PJA2 ARL6IP1 SULT4A1 SLC17A7 HSP90AA1 MAP4 ATP6V1B2 RPS28 GNAQ EPB41L3 PHYHIPL STMN1 BCL11B ID2 CLU SERF2 MAL2 POMP DPYSL2 NDRG4 CABP1 NDUFA1 NAT8L NHP2L1 SYNGR1 PGAM1 SKP1 SV2B NFIA CEND1 ARHGAP35 CLSTN1 NEFH DCLK1 MT-ND4L TSPAN7 PLD3 NIPA1 HSP90AB1 DSTN PRNP MORF4L1 NGRN MAP2K4 CAP2 NDFIP2 COX7C MTPN PRKAR1B PPIA IDS PITHD1 MAPK1 PDP1 COX6B1 ZNF365 CERS6 UHMK1 RAB6B YWHAZ ISCU COX4I1 CPE PGM2L1 HK1 EIF1AX OXR1 GUCY1B3 BASP1 FAM84A CRYM TCEAL2 UQCR11 RAB3C OLFM1 C14ORF2 PPDPF ENC1 NDUFS5 SUB1 CD99L2 SYT4 ATP5A1 SERINC1 FTL RAB27B NFE2L1 VAMP2 SOD1 DNAJC5 GABARAPL1 FXYD6 FKBP1A HOMER1 PPP3CB NEGR1 TMEM59L CREG2 SSBP3 SARAF TAGLN3 PKM CAMKK2 TUBB4A MTCH1 SRP14 RNF11 MTRNR2L6 DNAJB6 RP11-20I23.1 ATP6V0C IPCEF1 APLP2 NUDT21 CAPZB SPTBN1 KLC1 APP ATP6V0B USMG5 STXBP1 FAM127A PPP2R2C NAP1L5 CDK5R1 EID1 RP11-195F19.5 UQCRB CAMK2G TRIM37 SCN1B CLSTN2 SNAP91 ARL8B RAPGEF5 PPP2CB AP1S1 MGST3 ATP5G3 OXCT1 ATP5E AP2M1 NDUFA4 LGI3 SLC7A1 RAB11A GNB1 AES RRAGA RAB3A CAPZA2 ATP6V0E2 EPDR1 SYNJ1 CDKN2D DIRAS1 NEFM CDC42SE2 NUDT4 SERINC3 CDH13 NECAB1 SUMO2 BRK1 LYNX1 LMO4 HINT1 CHCHD2 DIRAS2 TESPA1 SLC12A5 GDA EIF4G2 RPS15 RAB2A SPARCL1 GPX4 NBL1 CADM2 CHMP4B SELT TMSB10 CDR2L SLC9A6 SLC38A1 RPL8 SMS MPPED1 KCNA2 DLC1 CYFIP2 CDS1 PGK1 WFS1 CPLX1 PPP2R1A RAB6A CNR1 MAPK8IP2 GAP43 NRAS CPLX2 SPRYD3 MT3 MORF4L2 PTPRN VDAC1 REEP5 RCAN2 CNTNAP5 ATP2B4 SMIM13 BEX2 PDE1A EEF1A2 BSCL2 RPL26L1 DLD CHGB C3ORF80 RASGRP1 TBCB PSMB5 KCNA1 PRDX1 IGSF21 LHFP SERPINE2 EIF1 RHEB SCN1A NAPA CDK14 SCAMP5 GOT1 C1ORF52 CHL1 MZT1 OPCML ATP5G1 ENO2 WBP2 TSPYL4 UBE2M LGALS1 TBCA SIRPA RPL3 SNCB PNMAL2 PSMC5 APLP1 UBB ATP6AP2 VSTM2L COX7B TRAPPC1 AP2B1 GABRA1 SYT11 HPRT1 FAM174A RPH3A DKK3 RPS26 ELAVL4 BSG RLIM BEX4 CTXN1 EPHA6 PRKAR1A RBX1 AZIN1 PFN2 INA FAT3 PPM1A SH3BGRL3 CLTC LRP1B SERPINI1 TEX2 PRDX3 POU3F1 ADAM23 PCP4 JUND JAKMIP1 LAMTOR5 SPHKAP ELMO1 WASL TOMM20 SLC22A17 UCHL1 RANBP1 ARL8A NUAK1 PSMD12 ETV5 PIK3R1 ATP6V1A MLLT11 SYT2 CAPNS1 AKAP12 TOLLIP HRH3 EGR3 WSB2 MRPS21 RPL41 RPL31 GRINA ATP2B2 COX5B VPS35 EPS15 MLF2 PPP3R1 SLC25A6 RHBDD2 RPL37A KIF5A NSF MFN2 CCDC184 SLC24A2 NMNAT2 MRFAP1 NDUFS6 NTN4 UBE2QL1 DGUOK NDUFA2 TSC22D1 LMO3 SCN2B DNAJA1 PINK1 ARF1 PCBP1 VDAC3 PTGES3 PCP4L1 SEZ6L2 CCDC85B ATP6V1C1 NDUFA5 EHD3 ACTR1A CADM3 NCOA4 TMEM155 LPPR4 MIEN1 MAP2K1 CACNB1 DYNLT3 ACOT7 RAD23B DCTN1 TMTC1 KCNMB4 ATP1A1 ASAP1 TMEM14A ATP5J2 ATOX1 SYN2 B3GNT1 PPP2R4 ATRN CLIP3 CDH22 FAM84B PRKCE PSMD8 CLTA WASF1 MDH1 PPP1CB GABARAP ALDOA MIF RPL15 SNRPE FGF12 SLC6A17 NCAM2 ADD2 CLDND2 POLR2M MAGEH1 TCEB1 FEZF2 GSTP1 PRUNE2 SRP9 KIF3C TSC22D4 HS3ST2 RAB11FIP5 RNF208 HSPA4 FIBP FXYD7 RFK HSPA8 NDUFB1 UBE2N MT1X KCNF1 C4ORF3 CCDC124 FARSA NCBP2-AS2 ZNF804A PODXL STOX1 VAT1L NAP1L3 INSIG1 RPS5 DGKG WBSCR17 OLA1 SPOCK1 C18ORF32 VGF HMGCR TXNDC17 PSMC3 SNRNP25 FAM131B VAMP1 MPC2 GABPB1 SYNGR3 IMMP1L SYN1 PIN1 ATP6V1E1 CDC37 NDUFC2 NGEF H2AFZ PRELID1 LINC00116 NPTN RPL32 UBE2V2 PCSK1N SSTR2 TPD52 BAD IDH3A NOV ATP6AP1 HCN1 NDUFB2 UBL5 KIF21A UBQLN2 ITGA6 UQCRQ TXN PHYHIP PAQR9 MANBAL LINGO1 ARHGDIG ARF3 HMGCS1 RPS12 CORO2B PITPNA RAB5C SLC25A4 TMEM70 NEUROD2 ATP5J NDUFB10 CBX6 SEZ6L STUB1 UQCR10 DEXI PGRMC1 ELFN1 SLIT1 ANAPC11 BAALC KIFAP3 NRCAM RAP1GAP2 WDR47 PSMB3 NARS ENO1 MRPL37 ATPAF1 ARPC5L PPARGC1A TMEM35 HSPB8 GMFB C14ORF132 MYZAP DMTN KLHDC3 PAFAH1B2 DDN IGFBP2 LDHB CD59 RPL26 ATP5F1 PSMD2 PTK2B PDE1C KAL1 FKBP8 KCNIP1 MMP24-AS1 TOMM34 SDCBP SLC7A5 ANXA7 TMEM230 MTND1P23 CTNND2 DCTPP1 ISOC1 NDUFA13 SULF2 PPP3CA MAP1LC3B SELM STMN4 ATP6V1F COA3 SPARC PTMA BSN SRD5A1 TPPP TCEAL7 CDK17 CA8 FAIM2 ADRA1D PIP5K1B SYNPO GHITM ACOT4 PAM ARL2BP TCEAL3 RPS2 SUMO1 NRSN2 TENM1 SLC25A22 NRN1 DCTN3 DYNLL2 STK39 NR4A1 PPP2R2B NUTF2 ANXA6 FAM43A CYCS TUSC2 NDUFAB1 HDLBP PFN1 ASNA1 EGR1 ELAVL2 ARHGDIA COX8A RPS3A ASPDH GSTO1 DYNC1I1 BCAP31 TUBB3 CA11 CCDC115 NDUFB8 UBA52 GSK3A PACSIN1 GFRA2 PFKP ANO3 TMOD2 NDUFA11 CLPTM1 KRAS HS6ST3 SLITRK1 PPTC7 RPL11 CLEC2L PRDX5 RPL10A BNIP3 ARL4C CISD1 COX5A CNTN1 ATXN10 KITLG DHCR24 HSPBP1 RPL18A SMYD2 GPCPD1 SRM TUBB4B FSCN1 NAA38 BHLHE40 C12ORF49 GRAMD3 SEC61G C11ORF96 ENSA COPE SLCO2B1 LDOC1 STXBP6 REEP2 HBQ1 C16ORF13 GSKIP ATP5G2 MYL12B CX3CL1 SNCA SUCLA2 RAN ETS2 NDUFC1 RAB7A SUMO3 NCDN BAI2 NCEH1 PVRL1 SNN PEG10 CCDC25 RHOB LYPD1 BTBD10 PPP2CA CDK5R2 MAPRE2 RPL35 FNDC4 MRPL20 PLCB1 GIMAP4 RSL24D1 UBE2D2 PAK1 OAT BCL6 COX17 SMAP2 CMPK1 SNX17 RAP2A C8ORF48 EIF1B FBXL16 CYB5R3 ROBO2 CHST8 RASGRF1 RPL23A SMIM12 C11ORF31 BAG4 GOT2 GPR158 SCN4B RNF181 NME1 RPS10 BCAS2 CHP1 TMA7 OCIAD1 TMEM141 CHMP5 RPL38 NDUFAF3 CAMK2D DDAH1 CSDE1 LINC00086 SPOCK2 NDRG3 DPP6 GABARAPL2 LMBR1 PNMA1 SPCS2 MAGED1 MDH2 PALD1 IQSEC1 ETFB QDPR ATP6V1G2 ARF5 RPL17-C18ORF32 RPL13 RAB3B RNASEK-C17ORF49 EPHB6 RPL17 SYTL2 C20ORF24 B2M PCDHAC1 PCDHA4 RPL21 PCDHA9 PCDHA10\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "pyramidal neuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: CHN1 MT-CO1 MT-CO2 PRNP MT-ND4 MT-ATP6 MT-CO3 SYNGR1 MT-ND3 SNAP25 SPARCL1 MTRNR2L12 FXYD6 CALM2 OLFM1 GUK1 ARPP19 RAB3C FAIM2 ATP9A EIF4A2 ATP1A1 NDUFB1 PDP1 RTN1 RTN3 PPP3CA TUBA1B STMN1 LMO4 YWHAB SYN2 ATP2B2 CDK5R1 OXR1 SERINC3 IDS SV2B TOLLIP TSC22D1 POMP VAMP2 PNMA2 RGS4 TSPYL1 HSPA8 KIF3C MAP4 ATP6V0D1 PHYHIP PJA2 AZIN1 ZBTB18 CCK EPB41L3 TSPAN7 PCMT1 RAPGEF5 YWHAG BEX1 MAP1B COPE SERPINI1 PPP2R4 CYB5R3 FAM127A CFL1 DCLK1 RPL23A SYNPO SLC22A17 COX7A2 AP3S1 GPR158 AP2B1 SKP1 PAFAH1B2 CPE BNIP3 RPL35 GLRA3 TBCB MTRNR2L8 MORF4L1 KCNV1 RPL37A DMKN ATP5G3 CLU NDFIP1 DYNLL2 DPYSL2 CAMK2G PRPS1 HSP90AB1 FNDC4 SCD5 RP11-195F19.5 EIF1AX SYT3 CLPTM1 DMTN TMEM151A NDRG4 GABARAPL1 SEPW1 BCAT1 NCEH1 ELAVL2 PPTC7 SLC17A7 TMSB10 CHCHD2 FAM3C PIK3R1 PPIA SLC39A10 UBA52 TPD52 RPL38 DYNLL1 TPI1 SRP14 NDUFB7 STXBP1 NRGN TMSB4X NDFIP2 ELAVL4 SIRPA SNCA TXNDC17 AP2M1 JOSD2 CALM3 NGEF CACNG3 NDUFA4 PI4KA KIF1A MORF4L2 SYT13 NHP2L1 ARL6IP1 LAMTOR2 SARAF KLHDC3 SLC8A2 MRPL55 NDUFA13 TMEM35 PET100 RNF11 CHP1 PTGES3 UQCR10 FTL CBLN4 MT-CYB YWHAZ CLTC GHITM SLC30A3 MT-ND2 SYT17 RPL26 CNRIP1 BEX4 SELT PSMC5 ITM2B SERINC1 BAI2 MFSD6 C14ORF2 GPX3 RAB3A ATP5I PPP2R1A SUCLA2 NDUFV1 CLSTN1 OCIAD1 DPP6 MAP1A COX6C SYT1 COX7A1 LMBRD2 EXTL2 GAPDH WBP11 GUCY1B3 SLC25A4 NDUFA1 HNRNPH2 DHCR24 ASAP1 CNTN1 AES PREPL UCHL1 POLR2K GABRA1 BSG HK1 ETS2 NAPB C6ORF1 RHOB TUBB4A NGRN WSB2 PLD3 GPX4 TIMP2 RAN SPOCK2 COX4I1 MTCH1 GRIN2A AP1S1 NEFM BEX2 UQCRQ PACSIN1 CAMK2D KCNC3 TM2D3 ARL6IP5 GNAQ NRCAM B3GNT1 RPS28 ADRA1D ATP5B ARL8B NMNAT2 RPH3A NDUFA5 ATP5G1 NDUFB5 DYNC1I1 SNRPN PPP2CA RAP1GAP2 HINT1 TWIST1 ARF1 ATP2A2 PSAP WASF1 NSF BCAP31 SNX3 EGR3 VGF CHMP4B SLC12A5 NAT8L MAPRE3 DDAH1 RASGRF2 FGF12 TUBA1A PRKCE FARSA RRM2B AK5 RTN4 DGUOK YWHAH MDH1 MYEOV2 MT3 KCNC2 ATP1B1 IFI6 TOMM20 S100A6 APLP1 NGFRAP1 STX1B ATP5J ISCU ATP5A1 VPS35 ATP6V0C GABARAP RP11-20I23.1 PCDHGA5 PCDHGA10 PCDHGA6 PCDHAC1 PCDHA4 PCDHA9 PCDHA10\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "pyramidal neuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MTRNR2L1 CLU RTN1 SPARCL1 SNAP25 MT-CO1 SYT1 CALM2 STMN1 NEFH MT-CO3 ATP1B1 CHN1 PKM TSPAN7 ATP1A1 CALM3 MAP1B PSAP PHYHIP ENO2 KLC1 NRGN YWHAH SPOCK1 BASP1 ENC1 ATP2B2 MTRNR2L12 MTRNR2L8 ARL6IP1 PFN2 STMN2 SLC12A5 SARAF ATP6V1A PEBP1 RPS15 NGFRAP1 TOMM20 RAB6A SERINC3 TUBA1B SNCG RTN4 PJA2 SLC22A17 MT-ATP6 LMO4 YWHAB HINT1 MT-CYB CADM2 PIK3R1 CHCHD2 FAIM2 PPP3CA MT-ND3 TMX4 CD63 FKBP4 PGRMC1 TAGLN3 NDN NAP1L5 SNRPN NDRG3 ANXA6 MORF4L1 AKAP12 PLCB1 PFKP BEX1 COPS7A NDUFA11 HPRT1 NAPB KIAA1045 CLSTN1 HTR2A OLFM1 FTH1 C4ORF3 NARS ARPP19 PTPRS RHEB FKBP1A NEFL ATP5G3 LGI3 DKK3 SIRPA ALDH5A1 RORB ATP6V1B2 ATP6V1F LYNX1 RGS4 HSP90AA1 DYNLT3 ELAVL2 ARL8B CYFIP2 LMBRD2 MTRNR2L6 MT-CO2 RPL31 TOLLIP YAF2 SULT4A1 RCAN2 SV2B SYN2 VPS35 TMSB10 RPH3A SMIM13 CTSD CDK5R2 YWHAG PPP2CA CLTC OCIAD1 RTN3 COX4I1 ATP1A3 CADM3 PREPL PLD3 POMP DCLK1 NDUFA4 MTATP6P1 KCNAB2 MYL12B VSNL1 TUBB3 ALDOA MYL6B SKP1 MAP1LC3B FXYD6 CERS6 TXN TUBB2A SNCA APP MAPK1 SEC61G RPL36A NUAK1 PSMC5 GPM6A SLC7A1 COA3 TMSB4XP4 ALDOC BRK1 STXBP1 NPTXR SCN1A PRUNE2 MAP1A TRAPPC1 MED10 ENO1 MT-ND5 SLIT1 SLC9A6 STMN3 CSDE1 SNX10 MYL6 ATP6AP2 BAI2 KIFAP3 UQCR11 SERPINE2 FUNDC1 INA SYT4 APLP1 ATP5A1 AZIN1 TESPA1 SNX3 ARF1 UBB NAP1L2 LINC00116 CABP1 CKB MFN2 ASAP1 TM2D3 GNG2 PITPNA MTX3 AP3S1 SRP14 PPP2R4 UBE2M TNNT2 GNAQ TSPYL5 ENSA LMO3 CADPS2 CALM1 GAPDH TMEM14A EIF4A2 RPL13A TMEM141 WDR47 CNIH3 RHOA ETV1 PHYHIPL STX1A OLA1 CHGB RPL37A RAB7A RAB3IP NAT8L BEX2 TMEM230 NDUFA8 HMGCS1 MT-ND4 CNTN6 AK5 ATP6AP1 SYT13 TGOLN2 ARL6IP5 RNASEK-C17ORF49 PSMB5 EIF1 SH3RF1 PRKAR1A RPL26 RHBDD2 C12ORF49 CST3 RHOB ARF3 PSD3 SYNGR3 EFHD2 HSP90AB1 RPS2 OXR1 DLD ARHGDIG SH3BGRL2 TMA7 GAP43 COPG1 SLC39A10 NELL2 THY1 PPP2R2B NCEH1 WBP2 DPP4 ARPC5L HAPLN4 DNAJA1 TMSB4X DYNLL1 RPL41 TOMM7 ATP5C1 ISCA1 KIF21A ELMO1 ITM2B PIP4K2A C6ORF1 SOD1 NRCAM ITM2C PRNP YWHAZ NNAT WSB2 TMEM155 PRDX5 ATP5G1 SLC25A5 GHITM SCN2B CCK NDFIP1 BSG PACSIN1 SLC17A7 CMPK1 HN1 ACTB CLEC2L NDUFB7 ECM1 UQCRH VAMP2 NDRG4 UBC CAPZA2 IPCEF1 TMEM35 PRKACB CPE SCN3B ATP5E ATP5B CNTN1 CAMK2G MYEOV2 APLP2 BAALC PNMA2 UQCRQ NCALD CAPNS1 CAMKK2 C9ORF24 REEP5 CHMP4B RPL21 S100A6 NDUFA1 NELL1 EDIL3 TSPYL4 EPHB6 B3GNT1 CDS1 SERPINI1 SYT2 TUBA1A NPTX1 REPS2 TSC22D1 CCT5 NECAB1 PTK2B SDCBP KCNC2 SPTBN1 SEPW1 ATP6V1G1 PSMC1 TPPP EIF5A2 KCNA2 ATP5O PCSK1N LDHB PPP2R1A CA11 RPL15 OSGEPL1 RAB4A SKAP2 DIRAS2 TPI1 FJX1 KIF5A NDUFB11 SLC38A1 RAB3A SNRNP25 SEZ6L2 PITHD1 PNMA1 AURKAIP1 PCBP1 BSN ATP9A KIF1A ATP2A2 WBSCR17 SERINC1 CTBP1 CLIP2 PTMA MAGED1 PIN1 TBCB ASPDH OAZ1 PCMT1 SPOCK3 EIF1B NRIP3 MAL2 COMMD6 KLF10 MTPN TOMM34 SYNJ1 MDH1 FABP5 ISCU GTF3A CYB5R3 TEX2 TCEAL2 BSCL2 GABARAP IDS NSF ATP6V0C RP11-20I23.1 ATP6V1G2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "pyramidal neuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-CO2 SNAP25 ENC1 GAP43 ARPP19 CALM2 SYT1 RTN1 GPM6A CCK MT-ND1 CHN1 MT-CO3 KLC1 EIF4A2 MTPN MT-ND4 OLFM1 STXBP1 RTN3 ENO2 HOPX SNRPN RTN4 GABRA1 PRKACB GAPDH ATP1B1 DNAJC6 PRKCE PGAM1 NGFRAP1 WASF1 VSNL1 TMSB4X PKM NCALD MT-CYB CLTC AK5 NCDN PDP1 PIK3R1 PITHD1 CREG2 SLC39A10 PJA2 CLSTN1 TMSB10 NDUFS5 SNX10 NEGR1 UQCRH SEPW1 TUBA1B GDI1 YWHAG RP11-20I23.1 ATP6V0C PPP2R4 TMEM130 PPIA SPRYD3 SCOC APP SPARCL1 TSC22D1 TUBB2A CALM1 PRELID1 SNCA PPP2CA APLP2 SYNGR1 SOD1 PSAP ATP1A1 ITM2C TPI1 RAB6B PAFAH1B2 COX4I1 LMO4 STMN3 SARAF KIF5A SLC17A7 HMP19 RABAC1 PPP1CB HSPA8 NDUFA11 FAM19A1 NAT8L PI4KA ATP2B2 PEBP1 RPL13 MT-ND2 MTRNR2L8 MAP1A C14ORF2 FAIM2 THY1 LMO3 MTRNR2L12 UCHL1 SNAP91 BSCL2 SIRPA MT-ND3 B3GNT1 EIF1 CHL1 CA11 RRAGA TUBB4A CBX6 ATP5G2 CKB TMEM35 SYT11 SEZ6L2 EIF5A2 HOMER1 ACOT7 PCBP1 STMN1 ACTB TBCA RPL26 CYCS CDK5R1 SYNJ1 NDUFB8 PPP3CA PREPL SLIT1 EPHA6 CNTN1 TRIM37 CLU NRGN IDS JUNB PTK2B GNG2 MIR6723 SNX3 MYRIP SLC9A6 D4S234E CRIP2 CD59 TUBA4A NSF C2ORF74 SUCLA2 RAD23B WBP11 DYNLT3 INA YWHAB RELL2 SNCB HTR2A RBX1 RPL15 CYB5R3 STMN2 PSMD8 DKK3 CPE TOLLIP MTRNR2L1 NPTXR DCLK1 FKBP8 NDRG4 PSMC5 IPCEF1 FAM219A CTNND2 PINK1 HMGCR SV2B RAB6A GNB1 UBE2F BRK1 ATP6V1A GOT1 UBE2N NCAM2 RCAN2 NDFIP1 EID1 MAP4 MTRNR2L6 RHEB EXTL2 BSN FSCN1 RPL41 GSK3A RPL6 COL6A1 NARS RAB3A VSTM2L FNDC4 PNMA2 RAB7A UBC UBE2D2 RPL12 BEX1 SPTBN1 TMEM155 ATP2A2 UBE2E3 FAM19A2 SCN1A WSB2 PPP3CB GRIN1 SUB1 PITPNA TOMM34 OLA1 DCTN1 ATP6V1B2 RPL38 CDK17 RPS15 DNAJA1 CHCHD2 ATP5G3 RPL13A POLR2L GABARAPL2 CIAPIN1 FAM134A DSTN SUMO2 PLD3 GLRA3 RPS19BP1 PRKAR1B TSPAN33 OXR1 KRAS TUBA1A ATP2B4 PPDPF FOXP2 DPP6 COL5A3 SEC61G SSTR1 TOMM20 RSL24D1 HSP90AA1 TSPYL5 VDAC3 EPS15 GABARAP RGS4 CAMKK2 KCNV1 MTATP6P1 NAA38 RAB5C GNAQ SYN2 EFR3A TLE4 HNRNPH2 BHLHE40 TRAPPC1 IQSEC1 YWHAH IFI6 RNF11 PRNP OAT HS6ST3 ZFAND5 NDUFB10 SCG2 GFAP C19ORF53 PSD3 FGF12 ANAPC11 SYNPO PPP2R1A ABHD8 SLC25A6 PTMA NECAB1 SYT4 MYL6 KCNH5 IDI1 RPL18A ARL6IP1 LMBRD2 NDFIP2 CACNG3 CAP2 ATRN ACAT2 FAM84A GUCY1B3 SYT5 PTPRN2 C1ORF115 CADM2 TM2D3 PNMA1 ALDOC DMTN ENO1 YWHAZ DIRAS2 CD99L2 TBCB CALM3 HSPE1 TESPA1 NEFL FRZB PRKCB SLC22A17 TPT1 COPS8 HK1 NDUFA5 FBXO2 CDH13 RAB2A PFDN4 MAP2K4 SERPINI1 COX5A PTPRT SERINC1 ATP6V1E1 PIN1 LANCL1 LDOC1L PTGDS GHITM PAK1 UBE2V2 KLF10 OPN3 FABP3 TIMP2 SLC39A3 SMS ATP6V0B VDAC1 SCN3B CAMK2G NELL2 BNIP3 MT-ATP6 CNTNAP5 TERF2IP LDOC1 PPM1A KIF1A NHP2L1 YWHAQ NDUFAB1 GDA MAP1B MAPRE2 RAB11A SLC12A5 ARPC4 EDIL3 VSTM2A PGRMC1 ATP6V1G2 C18ORF32 ALDOA TUBB RPL21 RPL17-C18ORF32 AC244489.1 PCDHGA10 PCDHGA6 PCDHGA5\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "pyramidal neuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-CO2 MT-ND4 MT-CO3 SNAP25 MT-ATP6 ATP1B1 CALM2 MAP1B MT-ND3 MT-CYB CALM1 MTATP6P1 MT-ND2 CCK CHN1 TUBA1B PPP3CA RTN3 MT-ND1 TMSB4X RTN1 SYT1 ACTB GPM6A FTH1 RTN4 STMN2 CLSTN1 THY1 SPARCL1 NDFIP1 ENC1 ENO2 PRNP HSP90AA1 ITM2B SERPINI1 EIF4A2 ATP6V1B2 VSNL1 YWHAH SNX10 PREPL LMO4 NDUFA4 SNCA PRKCB SLC39A10 NUDT4 IDS PPP2R2B STXBP1 CLU BASP1 ZBTB18 PJA2 RGS4 GAPDH NDRG4 TMSB10 TMEM230 OLFM1 SERINC1 CADM2 TPI1 UCHL1 MAP1A NEFL CYFIP2 CAMK4 ARL6IP1 CALM3 MAPK1 NAT8L PRKAR1B PPP3CB ATP1A1 FAIM2 KLC1 C1ORF115 GNAQ PLD3 DYNLL1 CLTC ARPP19 NRGN ATP2B2 RPL13A SLC17A7 GPX4 FKBP1A RAB3C TRIM37 LDHB ATP5B NIPA1 CPE RPL15 CNTN1 ARF1 KIF1A APP HSP90AB1 NCDN ARF3 PFN2 PTK2B NRN1 MTPN ATP9A ATP5A1 PSD3 MTRNR2L1 TMEM130 SOD1 PGM2L1 RPL8 OAZ1 DNM3 CHL1 STMN3 TUBB2A ATP6V1E1 FSCN1 OXR1 TSPYL5 APLP1 RAB2A TMA7 ATP5E PLCB1 PEBP1 VPS35 PCMT1 NCALD CDK14 TUBA1A ATP6V1C1 SLC24A2 TPD52 VDAC3 TSPYL1 KCNAB2 RAB6B PGAM1 NECAB1 TUBB4A RPL21 SNCB APBB1 UQCRH PRKACB BEX4 ATP6AP2 TAGLN3 SNN ARL8B SYT4 ELAVL2 SUB1 AP2M1 TGOLN2 PIK3R1 SARAF STMN1 PEX5L SLC9A6 NDUFA1 SYT11 RPS15 HSPA4 DYNC1I1 SULT4A1 NSF TMOD2 SPTBN1 CTNND2 DNAJC6 PPP2CA C14ORF132 AK5 ACLY ATP6V1G1 DYNLL2 KIFAP3 MAP2K4 CA11 ATP1A3 UQCR11 CABP1 BAD CERS6 YWHAG SCN1A JUND CAMK2D RPS27A SYN1 RPL18A KIF5A ATP5C1 SEZ6L NPTXR PHYHIP VDAC1 C1ORF56 ARF5 LINC00086 NAPA MTCH1 TUBA4A CDH13 SNX3 TMEM59L TEX2 FAM84A KCNA2 NCEH1 UQCRC2 DPYSL2 RPS4X GPR158 EPB41L3 SH3GL2 C14ORF2 COX6C TESPA1 AES RP11-20I23.1 CAP2 TCEAL2 SH3BGRL2 HAPLN4 GABARAPL1 FAM198B SPOCK1 UBE2QL1 HINT1 TPGS2 PAFAH1B2 GABARAPL2 RPL35 ATP6V0E2 SRP14 OCIAD1 USMG5 EDIL3 CACNB1 RPL13 UBE2M SLC12A5 BEX1 COPRS GUK1 UHMK1 PITHD1 NAP1L2 CAPNS1 HMGCR PSMB7 IPCEF1 GMFB PI4KA NARS CBX6 GRINA NDUFS5 STMN4 ISG15 MZT2B SLC17A6 RPS28 MAP4 STRAP ATP6V0C ATP6V1A POMP KCNA1 WSB2 SYNJ1 NGRN NKIRAS1 CPLX2 TPRG1L VAMP2 NFE2L1 PNKD ZFAND5 SLC22A17 LYNX1 CMPK1 CCDC184 EXTL2 TSPAN7 FAT3 NTNG1 CD99L2 MLLT11 NEFM PPIA SNAP91 LAGE3 RHEB FXYD7 NDUFA2 BSG C9ORF16 ARHGDIG APOE LGALS1 TMX4 RABAC1 SEPW1 MTRNR2L6 UROD CFL2 CYP26B1 DHCR24 CDC42SE2 WBP2 DCTN1 C6ORF1 CTNNB1 HSPA8 PTPRN2 RPL39 KLK7 PBXIP1 FKBP8 SLC7A8 TSPYL4 MTND1P23 MYO16 STK39 BEX5 WDR47 TRIM35 PPP2R1A GFRA2 UQCRB CDS1 PSAP MRPS21 MZT1 RPL32 SDHAF1 RNF208 SMIM13 NEGR1 DPP6 VGF NHP2L1 ABHD14A SELT STX1A GNB1 RFK MT-ND4L AQP4 SMS BNIP3 COX6B1 CHCHD2 DIRAS2 EIF1AX GABARAP NPTN ACTR6 ATP2A2 GADD45GIP1 C16ORF13 ATPAF1 EID1 YWHAB PRSS3 CLIP3 MORF4L1 MAP1LC3B RPL23A MAL2 FAM219A RCAN2 GHITM RPS2 POLR2I SCAMP5 IGFBP2 NMNAT2 SUMO3 RPL17 ITFG1 OAT NDRG3 TRIM47 MYL6 CCDC85B MRAS DBNDD1 CRIP2 TENM3 DMTN TERF2IP COX7C NRCAM HMGCS1 LL0XNC01-16G2.1 C1QBP HMP19 YWHAZ RPL11 NPTX1 LIMK1 GDI1 FIBP TSC22D1 LGI3 SRD5A1 RNASEK-C17ORF49 RORB POLR2M CTSD COX5B SV2B SLC25A22 MAST3 SYNPO MAP1LC3A GRIN2A KCNMB4 BLOC1S1 EFR3A MPC2 RAB6A EIF1B MTRNR2L12 RPS6 MTX3 WBSCR17 NDUFA11 PRPS1 HCN1 IQSEC1 SYT3 PDE1A RNF11 CBLN4 CNRIP1 AZIN1 UBL5 RRM2B RIT2 INA PPM1A ARL6IP5 CLSTN2 TOX2 DLD SUMO2 PRELID1 COX6A1 TMEM141 POLR2K TRIM36 CFL1 AP3S1 ETFB SCN3B DCC CYCS PRKAR1A CLTA PMP2 NDUFAF3 DPY19L1 PAM FXYD6 SLC38A1 MFN2 MLF2 AURKAIP1 ATRN AP1S1 NELL2 CREG2 DKK3 RRAGA DCLK1 UQCR10 SPOCK2 OPA1 BRK1 CA10 SYNGR1 KCNV1 RPL31 C20ORF24 TBR1 HPRT1 ANXA6 HIGD1A MAP7D2 SNRPN PKM BAI2 ADAM23 PSMA7 MORF4L2 DDN CARTPT TOMM20 ACTG1 RPL36A RAP1GDS1 UBE2N DDAH1 ALDOA SLC8A2 MKX RANBP1 REEP2 ERH PRDX2 TBCA NDUFB2 RPL6 TCEB1 ASAP2 DNAJC5 CDHR1 MB21D2 DIRAS1 MT-ND5 KCNH5 PVRL1 SLC6A17 RTBDN ALDOC TPPP MDH1 RPL17-C18ORF32 TXN SYN2 ADIRF CDK17 KIF3C PPP2R2C OPCML OST4 SERINC3 CKB ASAP1 MFGE8 NREP LDOC1 MMD LDOC1L ACTR10 SH3BGRL3 ATG101 PNMA2 WASF1 PNMA1 PROCA1 LDB2 ATP6V0D1 CRKL ATP6AP1 HN1 ATP5O SLC25A5 CYC1 IDH3A TCEAL3 S100A6 CSDE1 SEZ6L2 BEX2 FGF12 ANAPC11 SNCG REEP5 NAP1L3 ATP5H HRASLS5 ITM2C HS6ST2 EPDR1 DNAJA1 RBX1 TM6SF1 MRPS28 NGB SYT13 MAGED1 FAM127A PPP2CB DEXI MSMO1 SPRN PSMD8 ID2 MDH2 LAMTOR5 CAB39 TMEM155 TCEB2 BSCL2 VSTM2L CALB1 BHLHE40 GNG3 TMEM150C KIAA1045 RPL26 ADD2 UBE2E3 GOT2 TMEM14A FAM163B SSTR2 YWHAQ TUBB4B NAPB KIF21A UBA52 RHOB SLC25A6 MT3 MPPED1 PTPRS SLITRK1 ATP5G2 EGR3 FAM96B HEY1 MIF MBOAT7 NDUFA13 SERF2 RPL13P5 SERPINA3 PSMB3 ATP6V1G2 HNRNPA1P40 PCDHGA5 PCDHGA10 PCDHGA6\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "pyramidal neuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-CO3 MAP1B MT-CO2 MT-ND4 MT-ND3 SYT1 MT-CYB ACTB RTN4 CHN1 UCHL1 TUBA1B MT-ND1 SNAP25 RTN3 TMSB10 HSP90AA1 SLC17A7 CADM2 CALM2 MT-ATP6 RPL41 FXYD6 SYN2 MT-ND2 EGFL7 C14ORF2 KIF21A GAPDH ARL6IP1 MTRNR2L1 NGFRAP1 SEPW1 DKK3 GDI1 CCK KIF3C CLSTN2 SYNGR1 UBC COX5B TUBB4A LANCL1 CTSD MTCH1 GUK1 COX7A1 RPL26 CPE PPP3CB UBB MAP1LC3A MT-ND5 RPS15 GABRA1 YWHAZ SEC61G HSP90AB1 TBR1 C7ORF50 CLTA RGS4 ATP1B1 PRKACB PRKCB FAIM2 PLCB1 YWHAG CD59 PGRMC1 COMMD6 TMSB4X MLF2 KCNK1 DCTN1 PPIA NRGN ENC1 NDUFA13 NAA38 PRNP PTPRN TMEM59L ATP5G2 NCDN SCOC PPP3CA ELAVL4 IDS AES DYNLT3 NUAK1 SSTR2 FAM3C THY1 OXR1 GPM6A PIK3R1 CTNNA2 RAB3C NDRG4 ATP6V0B SCN1B YWHAB CTBP1 CSDE1 SLC6A17 CALM3 TOMM7 NUTF2 SLC24A2 ENO2 SCN3B MLLT11 SYT4 FTH1 NHP2L1 BEX1 NAPB HS3ST2 TUBB CEND1 ACTG1 ATP2A2 SLC25A22 PSMC5 IQSEC1 RPL12 NEFL CAB39 CADPS2 LYNX1 VDAC1 MANBAL PHB MAL2 MGST3 BEX2 CLU PACSIN1 ATP5B ARL8A VSNL1 OXCT1 ATP5I PNMAL2 TMEM35 ARL8B HBA1 STK39 FAM163B RORB SULT4A1 SLC9A6 RTN1 PITPNA MRAS TERF2IP TRIM37 AP2S1 UROS AK5 DSTN OPA1 CDS1 EIF4G2 TUBB2A NRSN2 NPTXR ATP6V1B2 CPLX2 ATP6V1A RAP2A UQCRFS1 ARF1 CREG2 APLP2 PRDX1 KCNC2 ABHD14A PRDX5 COX6C MAP4 SARAF GNG2 BHLHE40 CERS6 PEBP1 ASAP1 DPYSL2 CDKN2D STX1A C12ORF57 UQCRH PFKP NDUFAB1 PPDPF FKBP8 PSAP PSMD8 ARL2BP S100A6 HK1 OAZ1 MYL6 COX14 NRN1 PLS3 NDUFA4 MAPK1 NEUROD2 ALDOA RPL13A LINC00087 SOD1 NDUFB11 PHYHIPL CSRP1 SNRPN NECAB1 MTRNR2L12 UQCR10 AP2B1 RAP1GAP2 CD99L2 PTMA RPS28 NDUFS6 CAMK2G VAMP2 COX6A1 PSMA7 STMN2 ANXA6 RFK TCEB2 PTGES3 AKR1C2 SH3GL2 STK24 GRIN2A CALM1 IGSF21 ACTR6 NPTN RPH3A RAB3A TAGLN3 PSMC3 SLC25A5 C9ORF16 HINT1 FLOT2 ATPAF1 PPA1 SLC22A17 ANAPC11 LMO3 DNAJC5 ELAVL2 AZIN1 BSG BRK1 LINC00086 SERINC1 BASP1 WBSCR17 GNAQ CLSTN1 CDK5 AP3S1 HSPE1 HEY1 PIN1 MAP1LC3B PCDH17 BCAP31 PREPL YWHAH EFHD2 GNB1 SLC1A2 PJA2 HTR2A STXBP1 PSMB7 SH3RF1 SNAP91 TSPYL1 SERF2 RAB6B ATP5F1 NKIRAS1 ARF3 SUMO3 EIF1 KIF5A PITHD1 PDE1A RHBDD2 SV2B SPOCK1 NHP2 PRKCE RPL36A TXN ATP5G3 PTPRT SPARCL1 SMYD2 RNF11 NAT8L CAMK4 EPHB6 SERPINF1 PTK2B ATP5J LMBR1 ID2 TSPAN7 SLC39A10 NDUFS5 ABHD8 FAM131B PRKAR1A ALDOC MAPRE2 COX17 PGAM1 TPI1 PINK1 NCOA4 OLFM1 SYT17 NUDT4 ASAP2 OAT NEFM ZNF385D RPS10 MORF4L1 ADCYAP1 GSTP1 PFN2 HMGCR VAPB ATP2B4 SNCG PDP1 SNCA FKBP1B LMBRD2 RSL24D1 PLD3 UROD UHMK1 SH3BGRL3 ENO1 SYT13 UQCRQ COX4I1 MTATP6P1 MAST3 ATP6V0D1 MORF4L2 ISCU ITM2B CDK5R1 STMN1 MRAP2 GPR37 WDR47 MPPED1 RPL32 RPL15 PGM2L1 EDF1 POLR2L SPTBN1 CYCS DYNLL1 CAMK2D MDH1 RPL8 INSIG1 TUBA1A MTRNR2L6 PSMB3 PCDHGA6 PCDHGA5 PCDHGA10\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "pyramidal neuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 SYT1 MT-ND4 MAP1B MT-ND2 MT-CO1 CALM2 YWHAG STMN1 RTN3 TMSB4X HSP90AB1 SNAP25 MT-ND3 GAPDH MT-CO2 HSP90AA1 GPM6A PRNP NDUFB8 APP PSD3 EIF4A2 SYN1 PKM SH3GL2 ARHGDIA RTN1 FTL NRCAM TSPYL1 NAPB COX6C AP2M1 ZFAND5 OAZ1 PGAM1 DKK3 DYNLL1 VAMP2 PHYHIPL NCALD TMSB10 GRIN1 CHN1 NRGN PGM2L1 THY1 CKB PIK3R1 PRKCB TUBA1B CALM1 ATP1B1 VSNL1 COX4I1 UBE2QL1 PPP1CB MTATP6P1 TOMM20 DCLK1 SYNGR1 CDH24 OPA1 LDHB STXBP1 RPL35 UQCR11 SKP1 PPIA PEG10 GMFB INSIG1 GDA ITFG1 DIRAS2 PPP2R1A RPL13A PRKACB GOT1 CAPZA2 CDK5R1 CLSTN1 MED10 SPTBN1 RPS28 TSPAN7 YWHAH SRP9 SNCB TPI1 CLU MTRNR2L12 MT-ATP6 NAPA OAT CLTB ATP6V1B2 NDRG4 CAPZB MRPL52 SV2B MGST3 KIF1A MAST3 B2M RHEB ENC1 PFDN1 KIF5A MT-ND1 NGFRAP1 SLC17A7 GNAQ ARL6IP1 CNRIP1 NECAB1 WSB2 PJA2 SNAP91 PPP3CA MT-CYB PRKCE THOC7 WASF1 TUBB4A ARPP19 MDH1 TUBA1A MORF4L1 BASP1 PTPRT AP2S1 TMEM14A ARL8B NAP1L2 HDLBP UQCRH IDS MRPL20 CAMK2D PET100 BEX1 PTMA CHGB NBL1 TPT1 MAPK8IP2 ATP5O BAG4 TMEM70 MAGED1 PLCXD3 HK1 CXXC4 IQCK ERH RAB3A HS3ST2 PPM1A LMO3 KCNC2 ADAM23 UTRN PRKCG C19ORF53 NUDT4 ATP2A2 EFR3A ATP6AP2 SELT CHL1 DNER PRDX5 TUBB3 MAPRE2 CALM3 CADM3 GNB1 CYFIP2 RPS26 MRFAP1 SLC38A1 NRSN2 EPB41L3 AP3S1 GABRA1 OCIAD1 NEFM CAMK4 SCG2 SNRNP25 PEBP1 TMOD2 BLVRB EDIL3 PNMA2 CADPS2 RAB6A ATP1B2 HIGD1A SCAMP5 CTNNA2 KIF3C MED31 CLTA COX7A1 RPL7 UBE2D2 MDH2 CAP2 FAM131B RPRM ACTG1 SRP14 FGF12 SLC22A17 COX7A2 KRT86 APLP1 APLP2 PLCXD2 BAALC SERP2 C7ORF50 PSAP NFE2L1 TMEM59L MTCH1 BSN FKBP1B TCEAL2 BEX2 ENSA SSBP3 SARAF RP11-195F19.5 NMNAT2 SCN3B FAM43B VDAC1 MT-ND4L FKBP8 UBA1 DNAJC6 LAMTOR5 COX7C GRINA RASGRP1 RAB37 TMEM258 USP5 GPR158 VAPB NDUFB7 TMEM160 RAP1GAP2 SEZ6 PRDX1 CLSTN2 SYNPO TM2D3 DGUOK MAP1LC3B CRYM SLC6A17 BAI2 UBA52 ARF1 GJB5 NFIA C18ORF32 REPS2 BCAP31 OLFM1 SLC12A5 NEGR1 RAP1GDS1 PHYHIP GPX1 ACOT7 MFN2 WBP2 PPP2R4 NCDN FLOT2 EID1 FASN DNM3 GABRG1 HPRT1 ATP5J VDAC3 SEC61G MTRNR2L1 ARF3 WBP11 YWHAQ NGEF C2ORF80 MPP1 DYNLL2 RAPGEF5 C19ORF70 CRIP2 MAP7D1 SRM SPARCL1 ATP5G3 STMN2 NDRG3 EIF1 SPRYD3 MORF4L2 FAM3C RPL37A IGSF21 CADM2 CNTN1 SYT5 PI4KA STX1B TMEM151A SPHKAP ATP1A3 RPL38 ENO2 NDUFS5 EPS15 WFS1 RPS10 RAN RFK CTXN1 TEX2 TCEAL5 CTGF SULT4A1 KRT17 NDUFC2 TLE4 HTR2A SYT11 RPS3A FKBP1A ATP6V0B TRMT112 LAGE3 CORO2B RPS5 DNAJB6 GRM3 PNMAL1 CCK NEFL ARF5 SERINC1 INPP5F FAM198B ANAPC13 PNMAL2 SERINC3 AP2B1 RAB3IP NRAS TCEB2 SAMM50 ETS2 RPL11 AK5 COX5B RTN4 FAIM2 YWHAB DYNLRB1 SH3BGRL2 NUAK1 UBC PITPNA RAB3B ENOPH1 ZBTB18 GDI1 YWHAZ TPD52 KLC1 NDUFA1 PTN IPCEF1 MAP2K1 PGK1 TUBB2A TGOLN2 B3GNT1 CX3CL1 MTPN EIF4G2 PRKAR1A SMIM13 PCSK1N SIRPA PREPL SLC9A6 ATP6V1G2 NSF MTRNR2L6 ALDOA ATP6V0C RPL41 GABARAP RP11-20I23.1 BSCL2 NDUFA13 RNASEK-C17ORF49 RPL21 PCDHA4 PCDHA9 PCDHAC1 PCDHA10\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "pyramidal neuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-ND4 MT-CO3 SNAP25 CHN1 MT-CO2 MT-CYB TPPP RTN4 CALM2 MT-ATP6 MT-CO1 RPL31 MTRNR2L1 WASF1 PGM2L1 CHGB MAPK1 EIF4A2 YWHAG GDI1 IPCEF1 SERINC3 SPARCL1 JUND RPL37A GPM6A TOX STX1A RTN1 DIRAS2 MTPN NRGN AP3S1 NPTN MT-ND3 MLF2 ENC1 TMSB4X YWHAZ MT-ND2 ATP2B2 CKB NAPB FGF12 CLTC KIF1A SEPW1 PPP3CA RTN3 GABRA1 CNTN1 UQCRB STK24 KLC1 SYT1 MTRNR2L12 GNAQ RNF11 YAF2 HSP90AB1 THY1 CYFIP2 RP11-111M22.2 OLFM1 PPP2R2B GAP43 CD99L2 SERINC1 UHMK1 MTG1 SNCG PSAP NIPA1 ARL6IP1 PEBP1 CRKL BCAP31 PEA15 RPS15 FLOT2 RABAC1 MORF4L1 NDUFA5 MAP1B TSC22D1 RPS12 SNCB DPY19L1 SPTBN1 DACH1 CPLX2 CTBP1 SYT13 CTNND2 CMAS ATP6V1C1 PIN1 UBE2QL1 ARPP19 TERF2IP SCN3B ARF3 CDHR1 NDUFB8 TSPYL1 RPL35 CLSTN1 RPL11 ACLY APP ASPDH BEX2 ATP1A1 MAPRE3 MTRNR2L8 CTXN1 PNKP VAMP2 ITFG1 FAM3C GNG2 MAP7D2 CPE ATP5I EFR3A PGAM1 STMN2 SLC24A2 CLU DNAJB6 B3GALT2 CMPK1 ATP6V0E2 AK5 GRIN2A FXYD6 PLCB1 FSTL5 ATP1A3 ATP1B1 LDHB PJA2 SEZ6L2 PEX5L AQP4 PRKAR1B HS3ST4 CALM3 MTRNR2L6 COX6C PRPS1 YWHAH ATP2B4 ARL2BP GPR158 WBP2 FOXP2 MMD BSN PRKACB NRCAM NCALD SNAP91 NBL1 EPS15 C1ORF52 MT-ND4L CAMK2D FBXL16 NDFIP2 MTATP6P1 KCNAB2 UBE2M PREPL RPL36A SNX17 RP11-195F19.5 PRDX3 NDUFB5 DCLK1 RPL32 NAP1L2 SUMO2 OXR1 DHCR24 CHL1 HINT1 ATP6V1B2 OAZ1 RPL6 IDS NR1I3 RPS10 NSF NGRN DNAJC21 TBC1D15 RP11-219A15.1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "pyramidal neuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RTN4 SYT1 SNAP25 CCK CALM2 MAP1B NPTXR PSAP STMN4 CHN1 GPM6A ATP1A1 MT-ND4 CALM3 MT-CO1 TPI1 CLU TUBB2A PRNP ENO2 CALM1 ITM2C NRGN ENC1 ATP1B1 HSP90AA1 ARPP19 TUBA1B GDI1 DKK3 CAB39 SMIM13 UBE2QL1 PNMA2 TSC22D1 PEBP1 RTN1 APLP1 RAB6B RHBDD2 CLTC MYL12B CLSTN1 MT-CO2 HSP90AB1 ATP1A3 MT-CO3 RAB11A MT-ATP6 VSNL1 SLC22A17 ATP9A NRCAM DPYSL2 TSPAN7 CAP2 THY1 NCEH1 PDP1 FKBP1A CX3CL1 CDC42SE2 FIGN IPCEF1 CKB NCDN UQCR10 GNB1 NEFL NGEF PSD3 RGS4 SPARCL1 CPE ACTG1 UQCRH SNRPN PIK3R1 ZFAND5 SYNGR1 LMO4 SLC12A5 RAB2A CHP1 GAPDH YWHAZ OLFM2 ATP6AP2 FAIM2 GSTP1 MAST3 ATP6V1F BSG SUSD4 PI4KA PPP2CB YWHAH MORF4L1 STX1A GAP43 YWHAG HMGCR PNMA1 CNTNAP5 SLC39A10 FXYD6 MT-ND1 CAMK4 NCAM2 LDHB APP NEGR1 ITM2B ARL8B CARTPT HMP19 PRKAR1A NARS TUBB4A CPNE4 RPL13A CMAS SNAP91 NECAB1 KLC1 PEX5L AP2B1 VAMP2 SNCA ATP6V1E1 UCHL1 NSF SEPW1 PRKCB PHYHIP SYNJ1 EIF4A2 PGRMC1 BNIP3 AK5 MAP4 C19ORF10 SPCS2 NEFM KCNA3 MDH1 CRKL NDFIP1 TXN SV2B KCNAB2 FTH1 NFE2L1 SERPINE2 NCALD ATP2B2 CHL1 ARL8A CABP1 GRM3 GRINA RPS6 ISCU CADM3 BEX1 TSPYL1 OLA1 UBE2N GPX3 PRKCE H2AFZ RILPL2 BEND4 PPP2R4 PCSK1 UQCRC2 ADD2 MBP GABRA5 HNRNPH2 ATP2A2 PNKD CLIP2 STXBP1 ATXN10 ABRACL FAM127A MT-ND2 UBE2L6 TPGS2 NDUFS5 CDK5R2 GABARAP PHB FGF12 MAP1LC3B KCNK1 SNX17 ALDOA CLEC2L TMSB10 C9ORF16 LMBRD2 NKIRAS1 GDA CSDE1 CCDC85B SEZ6L CDK17 RAN RLIM UBA1 SUB1 TBCB FBXL16 NAT8L FAM134A TBCA MT-ND3 VDAC1 FXYD7 C6ORF1 CREG2 SULT4A1 TOMM20 PPP1CB CHGB PKM NPY HIGD1A SYT4 CALN1 SKP1 BSCL2 ATP6V0B MAGED1 FTL RNF11 ACTR1A MAOB TRHDE NDUFA1 EGFL7 EIF1 PPP2CA EPHB6 CACNG3 NDUFB11 TRIM37 NDUFA11 NDUFB5 SARAF MMP24-AS1 SNCB BEX2 OLFM1 SLC25A4 RTN3 CBLN4 TKT HPRT1 NPTX1 ARHGDIG RHOB OPCML PTPRN CD59 MRFAP1 CNTN1 RAPGEF5 CAMK2D ZBTB18 NUAK1 SYTL2 ATP2B4 LSM4 PIN1 WASF1 NPTN ITFG1 MUM1L1 NDRG4 ACP1 JUN PJA2 ELAVL4 DMTN DCLK1 EIF1AX KCNF1 CEP72 BASP1 SIRPA SRP14 ELMO1 ATP5G2 JUND CAPZB SERPINF1 GOT1 GPATCH4 ENO1 CADM2 ZFP36L1 FAT3 ARF3 TUBA1A TMEM258 RAB6A ANXA6 SH3GL2 ATP5G1 TMEM141 HMGCS1 PRKACB CNP ABHD14A TMX4 BRK1 HSPBP1 SLC17A7 DYNLL1 CD99L2 GADD45GIP1 COPS8 PLCB1 PET100 SYT13 DDN ACLY SYNPO RPS15 PPP2R2C DYNC1I1 ACOT7 DPY30 ARF5 NDUFV1 SERINC3 OAZ1 PDE1A NPTX2 OXR1 SCN1A RHEB KLC2 NDUFB1 ARL6IP1 REEP5 CRYM RORB DPP6 SERPINI1 ATP6V1B2 ATP5F1 SCOC MAPRE2 ADSS NDRG3 HSPA8 NAPB MLF2 TUBA4A INPP5F NGFRAP1 OCIAD1 SCN2B GNAQ VDAC3 CPLX1 C2ORF80 ATP6V1G2 RP11-20I23.1 TUBB3 ATP6V0C PGAM1 RPL41 PCDHA4 PCDHA10 PCDHA9 PCDHAC1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "pyramidal neuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SYT1 CALM1 MT-CO1 MT-CO3 VSNL1 CHN1 SNAP25 RTN1 PPP3CA BEX1 FGF12 ARL8A TMSB10 BASP1 PSD3 PTGDS CDK5R1 SULT4A1 ACTG1 FTL ACTB C4ORF3 YWHAG APP NRGN NDRG4 FXYD7 YWHAB PIK3R1 MTRNR2L1 GPM6A CHMP4B EIF1 CALM3 SYT4 MAPK8IP2 NAP1L2 MT-ND2 DMTN PGRMC1 SEPW1 MAP7D2 WFS1 ARPP19 CNTN1 GRIN2A MT-ND3 TSC22D1 PRKACB EIF4A2 YWHAH HPRT1 NMNAT2 MT-ND4 SCN3B RPL38 PLCB1 SUB1 ATP5G3 ENC1 VAMP2 TUBB2A MT-CYB NECAB1 GRIN1 APLP1 STXBP1 PTMA GAP43 TF MRPL12 PMP2 CREG2 GUCY1A3 SEZ6L2 MLLT11 USP5 AP2S1 ATP5B DNAJB6 NDUFB7 CLSTN1 PHYHIP HTRA1 MAP2K1 USMG5 C6ORF1 PPP2R4 TMEM258 RPL13 ATP6V1C1 BSN SNCA EPDR1 SH3BGRL2 NUAK1 CADM2 CD63 MRFAP1 AP1S1 OLFM1 ANAPC11 ALDOA CDK14 PELI3 MAST3 RNF181 ITM2C NDFIP1 SPOCK2 KIFAP3 TUBA1B LDOC1L PSMA7 BLOC1S1 BNIP3 ATRN EFR3A WASF1 ATP5H PGM2L1 DRAP1 MYL6B CDK17 KLHDC3 THY1 GSTO1 PRKAR1B PREPL PNMAL2 ARF3 RTN4 DIRAS2 MTRNR2L6 MT-CO2 MAP1LC3B TUBB4B C19ORF43 SYNPR PPDPF EID1 MT-ND1 MTRNR2L8 RHEB PI16 AP3S1 HN1 IDH3A SLC38A1 ETS1 MAPRE2 RAB27B OPA1 DNAJC6 LMO3 FAM3C SYNPO HSP90AB1 MTPN HDLBP RAB3A OCIAD1 TCEB2 CLTC NGFRAP1 LRP1B H2AFZ SEC61G SLC25A22 ATP5J RLIM RPL3 SPARCL1 PKM SPTBN1 GABARAPL2 RTN4R CLU ELAVL4 KRAS MAP7D1 MTRNR2L12 SUCLA2 RAB11A CA11 MTCH1 TPPP MAP2K2 CLTA HEPACAM RAB6A COPS8 CALM2 LANCL1 ATP6V1B2 CDC42SE2 SERPINI1 SLC7A1 ABCA8 ATP1A3 UBL4A ENO1 ITFG1 C9ORF16 COL9A2 RAN IQSEC1 COPRS UCHL1 RPL15 ATP6V1A FKBP1A FAM84A RNF11 GNB1 NARS DNAJA1 CPLX2 STMN2 SUMO3 ATP9A TLN2 RPS26 SYT11 CABP1 AP2M1 PEX5L NDUFB1 RPL17 CADPS2 TAGLN3 FAM134A POU3F1 INA GDI1 C1ORF115 TSPAN7 PPP2CB ALCAM SV2B ARF5 BEX2 ATP2B4 TUBA1A CHL1 RPS27A RAB4A UQCRB PPP2CA BEX4 GSK3A TOMM20 PEBP1 RHBDD2 SNCG PGAM1 TBR1 MT-ATP6 PINK1 SCOC SERINC3 RPL39 STX1A UQCRFS1 NEFL UQCRH RAPGEF5 LAMTOR1 TMSB4X PEA15 CYC1 PRDX5 LGALS1 MAPK1 NHP2L1 TRIM37 PPP3CB PFKP MEGF10 CARTPT KLC1 PAM GNAQ SLC39A10 FTH1 PDLIM5 RPL37A DPYSL2 BSCL2 RPL41 RPL36A MIF DNAJC21 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "pyramidal neuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: CLU SNAP25 MAP1B HSP90AA1 APP GFAP RTN3 MT-CO2 NEFL ENC1 GAPDH ATP1B1 CHN1 PSAP CKB MT-CO3 CLTC CCK NAA38 PKM PTGDS MT-CO1 GDI1 SPARCL1 NRGN CNTN1 PEBP1 SYT1 CD99L2 PPIA CLSTN1 ACTG1 TSPAN7 LANCL1 SV2B UBC APLP1 RTN4 SPOCK2 NEGR1 SCN1A ZIC1 DNAJB6 NEFM SLC6A17 KLC1 ATP2B2 EIF4A2 RHOA ANGPTL4 AP2M1 GRIN1 CADM3 CTSD TPT1 CALM2 CYP4F11 MYL6 RAMP1 NRCAM PNMA2 NPTN NCDN GPM6A FTH1 PRKCE GJA1 PDE1A HSPBP1 FABP5 TMSB10 SLC1A2 ATP1A3 PTGES3 MT-ND1 NELL2 PREPL VSNL1 CERS6 NPTXR CYFIP2 RP11-20I23.1 ATP6V0C NSF DKK3 TUBB2B RPS12 PPP3CA CISD1 ARF3 OPCML MYEOV2 LAMA4 DCAF12L2 TM6SF1 TMEM35 YWHAZ TMSB4X TCEB2 C9ORF16 RTN1 MPP1 DPYSL2 ALDH1L1 ABHD14A SPOCK1 PGM2L1 QKI STMN3 NAP1L5 PTPRS MAGED1 DCLK1 CD44 ENO2 STMN2 PHB COPS7A AXL CDS1 MT2A CHGB GABRA1 ITPR2 PJA2 ARPP19 SCD5 ATP9A PCDHB4 SYT4 PLTP PRNP DSTN NCEH1 ATP5B SH3BGRL3 PRKCB RHEB FAM127A CBLN4 EDF1 SCOC C14ORF2 MMP24-AS1 UCHL1 CRKL PGRMC1 AES MGST3 GOT1 MORF4L1 PDE9A TPI1 FAIM2 PCMT1 UBE2E3 NAT8L ATP1B2 PROCA1 ATP1A2 SSTR2 PTN CHMP4B LMBRD2 TSC22D1 IDH3A EPS15 UBA1 RAB6B CDH22 MTRNR2L1 TOLLIP C1ORF233 NFIA LMO4 VSTM2L MAPK1 SLC9A6 BEX4 CST3 CABP1 PBX3 RNF11 PTPRN GJB6 TUBA4A SIRPA MT-ATP6 STXBP1 ACTR1A CCL2 RAB1A MT3 SLC22A17 PPDPF AHNAK2 MYL6B ATP6AP2 RAB7A MAP1A PLD3 EDIL3 BANF1 CTBP1 OXR1 GMFB RAB5C DPP6 CALM1 SPTBN1 UBB ACOT7 RAD23B RPL37A RP11-195F19.5 RPL11 NDFIP1 CAP2 COL6A1 ATP6V1B2 BASP1 FAM3C TMX4 PIEZO1 BTBD10 YWHAG ENO1 NME1 RFK PRKAR1B AK5 NDFIP2 ACTB TPRG1L NECAB1 TSPYL1 EIF4G2 KIF5A GNG2 CAMK2G RGS4 ARHGDIA SARAF FJX1 FOS VAMP2 ATP5F1 PFKP TMEM59L DNER IGFBP2 CTXN1 CBX6 ACLY WASF1 HSPB8 ASNA1 ATP5J2 SCG2 SKP1 NPAS3 YWHAH SLC17A7 MT-ND2 NDRG4 MAP7D2 PCYT2 ARL8A STXBP6 MRPL52 ITGA6 CLDN10 MT-ND4 D4S234E SPOCK3 ANO3 CADM2 MTATP6P1 ZNF547 ALDOC MTRNR2L12 GSTO1 SLC1A3 DYNLL1 ATP6AP1 PSMD8 RASGRP1 TSPYL4 VDAC2 TCEB1 SLC12A5 IFITM3 TUBA1A VPS35 SNCB LDHB ZNF385D ESCO2 SYTL2 RAB3B RPL17-C18ORF32 IDS BSCL2 ALDOA TUBB3 C18ORF32 HNRNPA1P40 DNAJC21 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "pyramidal neuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MT-CO1 ATP1B1 TSPYL1 SNAP25 TMSB4X MTRNR2L1 VSNL1 CALM2 HSP90AA1 RPL13 SYT1 MT-CYB GPCPD1 RPL41 NDFIP1 NPTN ACTB CHN1 MT-ND4 MT-ND3 ATP1A3 TMEM14A MAP1B HSP90AB1 CYFIP2 SYN1 PSAP CKB MT-ATP6 PREPL NAP1L3 MFSD2A LMO4 YWHAZ OXR1 PKM TUBA4A MTRNR2L6 HSPB1 SYT4 APLP2 TUBB2A NGFRAP1 CLDN5 PITPNA OPA1 SPTBN1 TPT1 RTN4 CALM3 TOLLIP GDI1 RTN3 RPL13A VSTM2L RGS4 RPL37A SLC12A5 TMA7 ST20 TRIB1 CNTNAP5 PNMA2 CD99L2 HRK ATP6V1A RAB2A PRKAR1A BHLHE40 A2M BEX1 MPPED1 CTNNB1 NCDN SV2B ASAP1 SKP1 GAPDH FLT1 DUSP1 BASP1 SARAF MAP1LC3A TMEM59L KCNAB2 HN1 RGCC RAB11A UQCR11 DPYSL2 SUB1 NRCAM CALM1 ATP6AP2 CLU PCP4 RAB3A CPE SERINC1 PRNP GNAQ SCAMP5 MT-ND2 THY1 BTNL9 ANO3 PPM1A YWHAB CLTC PRDX2 STMN2 TNS1 TSC22D1 DYNLL2 ATP5C1 LPAR6 TKT MYEOV2 UBC PFN1 TM4SF1 NSF ATP6V1B2 SERINC3 RND3 PPIA ACOT7 RHOA COX4I1 DIRAS2 RPL38 KANK3 PREX2 GABRA1 PRKACB RAP2A MTRNR2L12 KL PARP9 PNMA1 SLC39A10 ACTL6A GNG5 VDAC1 RAB6B PRUNE2 CIAPIN1 SCD5 EIF5A2 RAMP2 CORO2B EFR3A PECAM1 AHNAK TSPYL5 ARHGAP35 UBB FAT3 VDAC3 PPP2CB RASGRF1 RPL35 EDN1 DCTPP1 VAMP1 ELAVL4 MAPK1 MT-ND5 GUK1 NDFIP2 SLC7A8 DGUOK NDUFB5 COX17 TSPYL4 IGSF21 ARFGAP2 USP5 HSPA8 SSBP3 TIMP3 SPOCK2 TSPAN7 RTN1 CST3 STOM ATP6V0E2 ATP5B NELL2 TLN2 KCNK1 SLC9A6 MT-ND4L ATP2A2 SEPT1 RAB11FIP5 SERPINI1 AP2B1 PTPN20A S100A10 FAM3C APP GAD1 ITFG1 SYNJ1 ZIC2 VAMP5 ALCAM TPD52 ENSA RPS26 LEF1 GPX1 SPOCK1 PLCB1 KLF2 SCN1A EID1 PPA1 SPARCL1 CABP1 EPB41L3 COPG1 RPL17-C18ORF32 LINGO1 SNRPN PHYHIP CHMP5 CX3CL1 TMX4 YJEFN3 UBE2QL1 GMFB IQSEC1 ARF3 UHMK1 SLC25A6 CACNA1H EBF1 SCAND1 TOX GFRA2 SIRPA JUND SCN4B CREG2 DPP6 PFN2 PAM SLC38A1 ARL1 RAB3C OAT PLD3 MAPK8IP2 ABCG2 PGRMC1 LBH GADD45B NTN4 ARL4C DKK3 TPRG1L PTMA PFKP NRGN PCMT1 TOMM20 EGFL7 VAT1L EDIL3 MLF2 ZFAND5 SLC7A5 IFT52 CTNNA2 ARHGAP29 EPHB6 RFK RHOB CLSTN1 RPS28 SEPW1 THYN1 LSR ARL4D COX6C CRYM CNTN1 PGAM1 SERPINE2 RPL15 RPS27A COX7B ELMO1 NRSN2 MAGED1 C18ORF32 RPS12 TMSB10 BCL6 PCBP1 WBP2 PLS3 DCTN1 SCN2B RAB6A DYNLRB1 ATP2B2 MT-CO2 VAMP2 SLC38A5 MDH1 DNAJC5 ATP5G3 CCM2L ENC1 FABP5 GOT1 C9ORF16 NEFL STMN3 ITM2B KCNF1 CAMK2G COX7A2L SLC17A7 MORF4L2 ARPP19 SYNGR3 NDRG4 OPCML SPATA13 GUCY1B3 VWA1 ENO2 TM2D3 EIF4A2 LDB2 RPL18A PHYHIPL ITM2C RP11-20I23.1 ATP6V0C B2M ATP6V1G2 PCDHGA6 PCDHGA10 PCDHGA5\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "pyramidal neuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: CALM2 CALM1 SNAP25 MT-CO1 VSNL1 YWHAH MT-ND2 VAMP2 ENC1 CALM3 MT-ND4 GPM6A PSD3 RTN1 PRKCB MT-ND3 ITM2C OLFM1 NDFIP1 ATP1A1 ARF5 SERF2 HSP90AA1 MARCKS APP PRNP SLC17A7 PRKACB STXBP1 SYT1 PTPRN FBXO2 COX6C ENO2 MT-CO3 NDUFS5 SYN1 CKB CREG2 SEPW1 PPP1CB BEX1 ATP5H MT-ND1 RAB1A CCK SUMO1 TOMM20 YWHAG RTN4 MTPN NRGN TUBA1B SERINC1 TIMP2 USMG5 TSPAN7 TMSB4X MTRNR2L12 GDI1 EIF1AX PCMT1 MT-CO2 ITM2B ARPP19 THY1 C4ORF3 RHBDD2 TMA7 CHN1 HN1 RP11-20I23.1 ATP6V0C SNX10 ARL8B CLIP2 DYNLRB1 STMN4 SLC25A6 ARL4C PAK1 ALDH5A1 HSP90AB1 NDUFB4 AK5 SNCB PPDPF SELM SYT11 CYFIP2 PNMA1 UQCR11 ADD2 TESPA1 HDDC2 IGSF21 PGM2L1 MT-ND5 NSF AP1S1 FAM134A BRK1 SUMO3 FTH1 OAZ1 TMEM65 KIF1A SLC25A22 CDC42SE2 RPL11 GNG2 IDS KCNV1 DPYSL2 UCHL1 HMGCR EIF4G2 FSCN1 MAL2 FXYD7 CAP2 SERPINI1 ACTB MTRNR2L1 MTATP6P1 TMEM11 NHP2 PRKCG EDF1 CRIP2 NDUFA11 PEBP1 DYNLL1 HOPX ATP6AP1 LYNX1 KIF5A TAGLN3 CLU CNTN1 CPE AP2M1 SRP9 NGFRAP1 APLP2 TUBA1A MT-CYB CYCS HAPLN4 PPP3CB NFIA ATP1A3 CFL1 FAM96B SNX17 PCDH19 STK39 HS6ST3 PFKP TUBB2A PFN2 HSPB1 MLLT11 SYNGR1 RAB4A YWHAZ PPP3CA HINT1 PSMB7 ADSS PLCB1 NREP PSMC3 MAPK1 SAP18 SDC4 ACOT7 MT-ATP6 SPOCK1 UBA52 CTNNA2 IQSEC1 BASP1 COX6A1 RPL41 SH3BGRL2 SNX3 NEFM MFN2 SNRPN PREPL HK1 PAFAH1B2 C14ORF132 ATP2B2 TUBB4A PDCD5 LDB2 BEX4 C19ORF53 SYN2 GABARAPL2 NGEF NCEH1 CTNND2 OPA1 CNRIP1 RPH3A LINC01296 FAT3 UQCRC2 OCIAD1 NDFIP2 PSMC1 ATP1B1 PJA2 PTMA NBL1 LPPR4 AP2S1 RGS4 ARHGDIA INA S100B CYSTM1 C9ORF16 LMO4 CCDC184 SLIT1 SNCA CDC37 UBQLN2 UQCRQ HPCA IPCEF1 C19ORF43 FAM3C DIRAS2 UBE2N DNER SNCG RAP1GAP2 KCNK1 RPL37A ATP6V1B2 HMP19 PDP1 ATP5F1 RHEB ATP5E RAB6B SYTL2 CKS2 NDUFA4 AP3S1 PTGDS UBC GFRA2 PINK1 DKK3 CLTC PGAM1 SUB1 YWHAB RAB3A MAP2K1 KCNC2 TMX4 EPB41L3 RASGRF2 ACLY DDN CHL1 ANAPC11 PANX1 ATP2A2 DCTN1 ALDOA MTRNR2L6 RPS26 TUBB TBC1D15 DNAJC21 PCDHGA10 PCDHGA6 PCDHGA5\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "pyramidal neuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 CHN1 MT-CO3 CLU PSAP MT-CYB RTN3 CCK GPM6A ENC1 PKM SYT1 NRGN MT-CO2 MT-ND4 ATP1B1 MT-ND2 RTN1 SPARCL1 DPYSL2 CADM3 GABRA1 CALM1 RTN4 MAP1B MT-ATP6 TPI1 HSP90AB1 SLC17A7 TMSB4X SLC22A17 NDUFA1 NPTXR CALM3 RAB3A CALM2 NGFRAP1 GDA DPP6 MTRNR2L1 TSPAN7 YWHAG ATP6V0B ATP6V1B2 EIF1AX PHYHIP BEX1 VSNL1 FTH1 LMO4 GAPDH TMOD2 PPP3CA PREPL SNAP25 C18ORF32 APP RAB6B APLP1 RPL41 ATP2A2 ARL6IP1 UBL5 CLSTN1 PPA1 MTCH1 RGS4 TMSB10 PJA2 TMX4 KLC1 FAIM2 CDH13 PEBP1 PPM1A TMEM59L SARAF PCMT1 OAT BEX2 ARPP19 AP3S1 EPHB6 TUBA1B RPS15 DCTN1 ATP6V1C1 PFN2 BAALC ENO2 RNASEK-C17ORF49 COPS8 MRFAP1 CRIP2 VAMP2 EIF4A2 PIK3R1 PRNP PRKAR1B TOMM20 RABAC1 PPP2CA KLHDC3 CPE NBL1 NPTX1 SLC39A10 ZNF365 EGFL7 FKBP8 STXBP1 CBLN4 CEND1 CD63 GDI1 THY1 MRPL33 SCAMP5 KCNK1 ATP6AP2 GOT1 SEPW1 SLC25A6 ACTR10 DIRAS1 TUBA4A NGEF CAP2 UBB C1D CREG2 UQCRQ SMIM13 RHBDD2 PGRMC1 WASL MAGED1 NGRN UCHL1 DRAP1 SNX10 MYEOV2 CAMK2G SYT11 SLC12A5 PSMC3 SYNJ1 STMN1 D4S234E PI4KA TSPYL1 APLP2 NHP2L1 HOMER1 PGK1 NUAK1 LDHB CYFIP2 CKB NDUFA4 HMP19 SNRPN OCIAD1 SYNGR3 MAPK1 GSK3A NDRG4 TSC22D1 PRKCE HINT1 MAP1A PRKCB ATP5A1 DNM3 PDP1 CNTN1 KIF1A BCAP31 RPS26 YWHAB SCG2 DSTN OLFM1 RBX1 NDUFB11 UQCRC1 RRM2B C19ORF70 MT-ND3 TCEAL2 LL0XNC01-16G2.1 PTK2B OAZ1 ADORA1 PPP2R2B BANF1 BHLHE40 NUTF2 UHMK1 LINGO1 ITFG1 HSPA8 PSMC5 BNIP3 PEF1 DIRAS2 MGST3 PPP2R1A DDN SH3BGRL3 NDUFB10 RPL39 NEFL HOPX UBA52 ANAPC11 KCNA2 PAK1 NAT8L COX14 NDUFB7 PRKACB FKBP1A S100A6 YAF2 LGALS1 EFR3A RPL18A GPR158 STMN2 SLC7A5 C12ORF49 FAM134A CAMKK2 C14ORF2 MAP2K2 RAB1A TMEM35 HMGCS1 ETS2 PPP2R4 CDKN2D WDR47 PRKAR1A SNX17 YWHAZ RPH3A ATP1A1 PPP3CB SYT13 OPA1 EDIL3 AP2M1 CA11 CERS6 RPL35 NRIP3 MAP4 EID1 GABARAPL1 CDK17 SERPINE2 NPTX2 CDK5R1 VGF PCDH19 ACP1 CHMP5 GTF2B NECAB1 UQCRH AURKAIP1 ATP1A3 MDH1 PRDX5 OLFM2 RPL37A NDRG3 ARHGDIG ID2 GNG2 ETFB SLC24A2 MTATP6P1 SYN1 SERINC1 RAD23B HSPBP1 RILPL2 HSP90AA1 HK1 AP2S1 KCNV1 ITM2C TOLLIP ISCA1 CNR1 ATP6V1A ATP2B4 PLCXD3 GPX4 ESYT1 CAPNS1 NAPB NCDN LINC00116 FAM84A PRELID1 ATP6AP1 CYB5R3 SCD5 TGOLN2 PPIH LDB2 OPN3 FXYD6 MAP7D2 GYG1 NNAT RPS28 UBE2V2 LIMK1 PGAM1 KIAA1045 RNF11 CFL1 NDUFC2 COX4I1 FIS1 TRIM47 MT3 ARL6IP5 CHL1 GMFB NRSN2 NDUFB1 CORO2B CADM2 RPL11 ZBTB18 PFDN1 ATP5E SLIT1 BSN NEUROD6 C1ORF115 BSG TMA7 CLTC ENSA MAST3 SCN1A PPP2R2C COX5A LYNX1 SH3GL2 NDUFB8 ZFAND5 PSD3 CACNB1 CYCS PITPNA ACTB SERINC3 OPRM1 NAP1L3 POMP RRAGA TMEM230 MORF4L2 GAP43 SYT4 DYNC1I1 OXR1 RGS12 KCNC2 RASGRP1 YWHAH UBE2QL1 ZNF503 WSB2 OPCML TKT TM2D3 RAB2A DMTN TRMT112 ALCAM REEP5 COPS7A HDLBP SYN2 LYSMD2 GPCPD1 PGM2L1 CHI3L1 NDUFS5 MACROD1 AES COX8A ALDOC GHITM PNKD NDFIP1 PPP1R9B PPIA ADAM23 RAB5C ATXN10 PCYT2 TCEB1 TMEM151A ATP5G3 TUBB4A C6ORF1 RASGRF1 SNAP91 FKBP4 CTNND2 WBSCR17 DYNLL1 AP2B1 IDS TUBA1A RCAN2 TSPYL4 TAGLN3 COX6A1 ACOT7 DHCR24 ARF3 TLN2 PPP2CB NPTN STX1A ACTG1 COA3 VSTM2A ATP6V1F PIFO TCEB2 TMEM141 HRK MT-ND5 GUCY1B3 TBCB CAMK2D KIFAP3 KIF21A TMSB4XP4 NCALD SNCB RP11-20I23.1 RPL36A BSCL2 ATP6V0C ALDOA NSF TUBB\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "pyramidal neuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PSAP CHN1 RTN3 MT-CO3 TSPYL1 APP MT-CO1 ARL6IP1 RTN1 GPM6A MT-ND4 NCEH1 TUBA1B DNAJC5 SYT1 HSP90AB1 HSP90AA1 STMN2 VAMP2 CALM3 CALM1 YWHAG PRKAR1B MT-CO2 PRNP PNMA2 CAP2 TMTC1 CPE HMP19 NUAK1 ATP6AP1 NEGR1 PHYHIP HTR2A SNAP25 YWHAZ NPTN SLC12A5 IDH3A DPYSL2 CDK5R1 PCP4 CKB NPTXR PLD3 ATP6V0E2 MT-ATP6 OXR1 TSPAN7 SPARCL1 SLC9A6 TOLLIP MBP SERF2 RTN4 KLC1 GABRA1 ALDOC LMO4 PKM RAB3C CLU PFKP FAM3C TUBB2A RPL41 SERINC1 MTATP6P1 MTRNR2L1 NRGN AP2M1 LMBRD2 TUBB4A FAIM2 PAK1 EPHB6 OLFM1 CLSTN2 UBA1 STMN3 THY1 SLC17A7 C1ORF52 KCNAB2 SERPINI1 CPLX1 OAZ1 SNN ENC1 SV2B PPIA PDE1A STX1A MT-CYB MAP1B CLSTN1 PGRMC1 STXBP1 ATP1A1 PRKACB CDS1 GDA LAP3 C12ORF49 ETV1 RAN MLF2 NRN1 TMEM147 EPS15 NDUFS5 ARL6IP5 RNF11 APLP1 ATP2A2 ARL1 TMEM151A KCNK1 SEPW1 PFN2 MTPN TMEM155 RP11-20I23.1 TUBA4A ARPP19 DNER DNAJC6 SNCB KIF21A OCIAD1 KIF1A SNAP91 MTRNR2L12 CYP26B1 GAP43 PTPRN CAMKK2 GDI1 WASL SYT11 PGM2L1 ARHGDIA PJA2 RASGRF1 NAPB PFDN4 PLCB1 RHEB NGFRAP1 CITED2 FAM127A STRAP BAI2 SNRPN NREP ATP1B1 PIK3R1 NEFL SLC22A17 MT-ND2 ACTR10 FTL WBP2 FKBP8 EIF4G2 RTN4R MAP2K4 SYT13 GNAQ FTH1 SLC24A2 ACTB HK1 UQCRB PDP1 MAP7D2 MDH1 NAP1L2 HN1 REEP5 PCMT1 MFN2 KCNC2 UQCR10 PPP1CB ATP1A3 KLHDC3 MT-ND3 LIG1 TM6SF1 DCLK1 CMAS NDUFV1 STMN1 SNX10 RAB6A ASB13 NECAB1 ITM2B CACNG3 FBXL16 GABARAPL1 ACTG1 UBQLN2 RPL36A UCHL1 BSN TMEM59L POLR2L ACLY CTXN1 VSNL1 SCN3B TMEM130 LAMTOR5 SLC6A17 ZNF365 PCDH19 RPS27A ATP6AP2 MANBAL APLP2 PRKCB ATP2B4 LYNX1 CLTC TMSB10 CFL1 PEF1 RPL15 RAB40B PHYHIPL TCEAL7 ESYT1 PRDX3 SPTBN1 ATP2B2 GHITM RAB2A PPP2R4 PRUNE2 ABHD14A CADM3 C1ORF115 MAPK1 MFSD6 WDR47 MAGED1 PPP3CA ANXA6 NTN4 ITFG1 CAMK2N2 BSG PPP3R1 NDUFB7 NDN PREPL CMPK1 NSF NCDN WASF1 SYN2 TSPYL4 ATP6V1A CLIP3 SYNJ1 COX7A2L DYNLT3 ATP9A KIF3C NEUROD2 PSD3 FLOT2 GSKIP YWHAH ATP6V0C KCNAB1 PGAM1 PAFAH1B2 BSCL2 ALDOA GABARAP IDS MTRNR2L6 PCDHA4 PCDHAC1 PCDHA10 PCDHA9\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "pyramidal neuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO2 MT-CO1 CALM2 CHN1 CALM1 CLU VSNL1 NECAB1 MAP1B HSP90AB1 PRNP ENC1 TSC22D1 PSAP YWHAG RTN3 MTRNR2L12 PREPL GPM6A MT-CO3 MDH1 PJA2 SYT1 PPIA ATP1A1 CLTC PPP3CA CADM2 MTRNR2L8 UQCR10 CKB CLSTN1 KIF1A SLC12A5 PRKAR1B KIFAP3 ACTB PRKCB SERINC1 LMO4 TUBA1B ACTG1 TUBA4A SLC24A2 UCHL1 ARL6IP1 ATP2B2 MT-ATP6 MTCH1 ARPP19 NGFRAP1 YWHAB RTN4 NUAK1 SNCA DPYSL2 VPS35 SLC9A6 SPOCK1 IDS RTN1 AP2B1 MT-ND4 CALM3 NAPB GAPDH TCEB2 RPL35 EIF4A2 STMN1 TAGLN3 RCAN2 PTPRN STXBP1 GFAP SLC39A10 LIMK1 ATP6V1B2 AP2M1 RAB1A SYT5 TUBB4A SLC6A17 CYFIP2 OLFM1 APLP1 TUBB2A SYT11 WBP2 SPARCL1 SYNPO NDFIP2 APP MDH2 NDFIP1 HTR2A PHYHIP CCK TUBA1A CHP1 CNRIP1 NAP1L3 WARS FXYD7 BRK1 ARF3 TMEM59L GAP43 NEGR1 SNAP25 GABRA1 DYNLL2 ITFG1 SYNGR1 CD99L2 NDUFB8 NRGN FAIM2 PNMA2 KCNMB4 PFN2 SARAF CFL1 UBE2N NRCAM DHCR24 CERS6 PRKACB FXYD6 MAPK1 SLC25A22 MT-ND2 ATP2A2 ZBTB18 NDRG4 OPA1 PPP3R1 SV2B THY1 ATP1B1 COX7B NEFL CADM3 ARF5 TLN2 PINK1 RAP1GDS1 PAQR9 SLC39A3 LGI3 ATP6V0C NCAM2 EPS15 SLC9A1 LDB2 UQCRQ HOPX BEX2 DPP6 C9ORF16 PEBP1 PPP2CB PKM PPP2R4 MAPRE2 CPE MT-ND3 SLC22A17 RGS4 MT3 ATP1A3 BAG4 RNF11 PPP2R2C UBC SLC17A7 DYNLL1 NDUFA13 ARHGDIA SH3GL2 SLC25A4 PPP2CA CTSD RHEB EIF1B RAN SLC7A5 STMN2 PPP3CB USP5 RAB7A RAB3C UQCRB TMEM70 MAP2K4 EGR4 PEX5L ELAVL4 SDCBP HSP90AA1 MLLT11 ATPAF1 VSTM2L RPP40 HMP19 MARCKS VDAC3 MAP7D2 DMTN NCDN SCD5 B3GNT1 ACAT2 SYN2 PPDPF FTH1 RP11-20I23.1 FKBP1A SNAP91 GPRC5B FTL HDHD1 FAM131B MT-CYB TMSB4X ANXA7 EGFL7 ATP5J CABP1 FABP5 NPTX2 SCOC ENO1 CMPK1 YWHAZ RBX1 DNAJB6 HMGCR MORF4L1 INPP5F DNAJC6 COX6B1 MYEOV2 TMSB10 KCNK1 SEZ6L2 DDN NMNAT2 HN1 TBR1 MTRNR2L1 TSPYL4 SRP14 NGRN ARL4D PIP4K2A CPLX2 KCNAB1 ARPC4 VAMP2 CTNND2 ATP6V0B MFSD6 PGRMC1 ATP5F1 SERF2 NPTX1 MAP1A RPH3A IDI1 CCDC85B TM6SF1 CDK5R1 RPS6 SNRPN ATP9A SCN1A PGAM1 CA10 LMBRD2 SYT3 FKBP8 GNAQ CDH8 CHGB RAPGEF5 TSPYL1 BCAP31 OCIAD1 RAB6B COPE DYNLT3 MFN2 NSF C1ORF233 CCDC25 NELL2 ARL8B GPX4 TMX4 ATP6AP1 NIPA1 CDKN2D ASPDH DKK3 NDUFA8 CALCRL ATP5G1 SNCB GOT1 LYNX1 KCNC2 NAPA APBB1 GNG3 KIF21A SCN1B SULF2 SUMO2 LAMTOR2 PRKCE PDP1 RPL38 KIF5A NAP1L5 BTBD10 TMTC1 GHITM NHP2L1 OAT CORO2B KLHL12 MAP4 CBX6 PRDX5 PLCXD3 OLA1 AHNAK2 PGM2L1 INSIG1 VGF GDE1 SCAMP5 FAM127A HK1 SRP9 MAST3 ST18 PCSK1N PRKAR1A SEPW1 HAPLN4 ISCU PIK3R1 PLCB1 RPS28 MTND1P23 MT-ND1 MTRNR2L6 RNASEK-C17ORF49 ATP6V1G2 MIF PCDHA9 PCDHA10 PCDHAC1 PCDHA4 PCDHGA10 PCDHGA5 PCDHGA6\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "pyramidal neuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-CO3 MT-ND4 MT-CO2 MT-ND3 SNAP25 MT-CYB SYT1 MT-ND2 CHN1 MT-ATP6 MAP1B YWHAG ENC1 CALM1 MTRNR2L1 TSPYL1 NRGN MT-ND1 PPP3CA RTN4 TMSB4X APLP2 CCK OLFM1 NAPB VSNL1 ATP2B2 PPIA STXBP1 CAMK4 ATP1A1 PRKCB SUMO3 CDK5R1 LMO4 WASF1 GPM6A CPLX1 SERINC1 ZFAND5 FTH1 SNX10 INPP5F HSP90AB1 SYT11 ARPP19 TESPA1 SULT4A1 GNAQ EIF4A2 ENO2 NGFRAP1 PNMA2 TUBA1B ATP1B1 MTRNR2L6 SUB1 CALM2 SYT13 CALM3 GRIN2A COX7C MAPK1 RGS4 SNRPN RPL13A NECAB1 CABP1 CLU MTRNR2L12 OCIAD1 PEX5L RAB4A STMN3 ELAVL2 UCHL1 PPP3CB RAB3A PLCB1 TMEM230 RFK SH3GL2 PSMA7 RAP2A SLC22A17 RNF11 ARF3 RTN1 GDI1 UBE2V2 GAPDH EID1 STX1B TPD52 ATP6V0D1 NUAK1 HINT1 GRIN1 CBLN4 ZNF365 CAP2 CFL1 PPP2R2C TCEB2 ACTB ZNF503 KCNAB2 DPF3 TRAPPC1 RHEB ATP5F1 SERINC3 RASGRP1 CFL2 SERPINI1 PINK1 IQSEC1 ARL4C SCAND1 SARAF NREP DYNC1I1 NSF CDC42SE2 SLC25A4 CPE SH3BGRL2 PTPRS PREPL SCOC PPP2R2B MAPRE2 MDH1 HMGCS1 SLIT1 ATP2A2 LRRC59 MAP1A JUND ANXA6 AKAP12 TPGS2 TCEAL7 RCAN2 ARF5 HSPB1 RTN3 CEND1 UQCRC1 SLC8A2 TMEM132C RPL3 PITPNA RPL32 NAT8L CHL1 NBL1 PSD3 COX6A1 PLD3 TRIM37 MKX ITM2C HS6ST3 CDR2L PGAM1 PPP1CB POLR2I SLC17A7 RAB6B SRM SCG2 MAPRE3 MT3 GNB1 WBSCR17 PRNP SYN1 YWHAZ KLC2 PSMD12 CCDC115 MDH2 COPRS FAIM2 RASSF3 FJX1 CACNG3 UBE2F RHOA DNAJC5 EIF1 NDRG3 ADAM23 SYNGR3 CTNND2 SEPW1 BASP1 SOD1 SYT5 RSL24D1 VAMP2 UBE2D2 HPCA BEX1 RPH3A CYCS NEFL TXLNB RORB MAP7D2 TSC22D1 COX4I1 TOMM20 HMP19 EFR3A TOMM34 MT-ND4L KCNA1 SCAMP5 SNCB TSPAN7 SV2B FABP7 UBE2N HDLBP CCT5 ATP5J TERF2IP RNF208 PDP1 PFN2 PCBP1 TMSB4XP4 CAB39 SYT2 GRINA CORO2B CCDC25 ATP5E CADM2 NDUFA2 RAB2A RASGRF1 PRUNE2 TMX4 SLC24A2 GNG3 TMEM120A SCN1A DNAJC6 CLTC ATPAF1 MFSD6 EPHB6 WDR47 LINC00087 UQCRH ANAPC11 D4S234E RPS4X TALDO1 CCDC85B UBE2QL1 SERF2 HK1 STRAP PHB TBCB EPS15 SLC38A1 DCLK1 OAT SSBP3 PDE1C FABP5 PCDH17 RPS26 NPTN OPCML MORF4L1 ARF1 PRKAR1A FGF12 NAP1L2 KCNA2 KLC1 PEG10 NCEH1 GABARAPL1 SLC39A10 GLRA3 C19ORF43 GUK1 KMO ALDOA PCDH8 CTNNA2 SYNPO KIF1A CA10 SRD5A1 VAPB HSPA8 TUBA4A DLD KIF21A KCNAB1 PRKCE SRP14 PHYHIPL EDF1 C1ORF233 RAN CHST8 KCNV1 RPL35 OPA1 NIPA1 PCMT1 TMEM117 CSDE1 ALDOC SIRPA TCEAL2 PEBP1 TPI1 SPARCL1 MAP2K1 FAM219A CDK5R2 SYNGR1 PPP2CA PGK1 MAP2K2 ITFG1 FKBP8 NGEF SKP1 PRKACB SYN2 LMO3 RBX1 CRIM1 ETS2 MTATP6P1 ADSS LANCL1 YWHAQ RPS19BP1 DIRAS1 FXYD6 FNDC4 UHMK1 TMSB10 CBX6 TMOD2 SRGN ATP6V1C1 MAGED1 TUBA1A ZBTB18 TMEM130 SDCBP FBXO2 COX7B CLSTN1 GPX4 VDAC1 AK5 THY1 SNCA WSB2 KCNH5 TLN2 CNTN1 SNCG CARTPT SLC12A5 ATP6V1G2 CAMK2D OXR1 MLLT11 PRKAR1B ATP6V0C TUBB3 RP11-20I23.1 PCDHGA10 PCDHGA6 PCDHGA5 PCDHA4 PCDHA10 PCDHA9 PCDHAC1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "pyramidal neuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RTN1 SYT1 ATP1B1 SNAP25 HSP90AA1 MT-CO2 TUBB2A VSNL1 CALM1 OLFM1 CALM2 TMSB10 GOT1 APLP1 MT-CO1 ARPP19 CTSD THY1 SH3GL2 GAPDH TUBA1B TSPYL1 PEBP1 CHN1 TUBB4A NRGN ACTB NAT8L SEPW1 APLP2 MT-ND2 CLSTN1 MT-ND4 PRNP ATP6V1B2 YWHAG MAP1B WBP2 ARL8B SERPINI1 RTN3 NELL2 ZFAND5 TOMM20 BEX2 UCHL1 KCNC2 SULT4A1 ATP5B NRN1 PCMT1 PI4KA APP CLSTN2 PGAM1 NPTXR EIF4A2 SCAMP5 SARAF KLHDC3 NAPA C11ORF31 MT-ATP6 TMEM59L TUBB4B CKB TMSB4X CHP1 POMP NDUFAF3 CADM2 ATP6AP2 NCDN CMAS YWHAZ HSP90AB1 ATP2A2 GSTP1 CCT5 MT-ND3 BASP1 GPM6A MT-CYB ENO1 UBE2N GDI1 NAP1L2 STMN1 ENC1 NEFL COX7C FXYD6 PLD3 ATP1A1 HEY1 CAP2 TBCB INA PPIA EDIL3 SNCA BRK1 RPL8 PSD3 EIF4G2 KIAA1045 FTH1 CDC37 CLU TM2D3 RAN RGS4 MTATP6P1 PITPNA ITM2B UQCR10 DPP6 CIAPIN1 NDN BEX1 PGRMC1 PPP1CB FBXL15 ATP9A CADM3 MAPK1 PIK3R1 ID2 FARSA MT-CO3 CAMK2D RP11-195F19.5 UBQLN2 BSN ARL2BP CPE GSK3A SNAP91 ARHGDIG FKBP8 PTPRS STXBP1 ATP6V1A COX4I1 TUBA1A CERS6 ROBO2 RPL21 LDOC1 NDUFS6 RPS2 NAPB DPYSL2 PTK2B NDUFV1 VAT1L GUK1 PRDX2 TCEAL5 TSPYL4 RP11-20I23.1 COX7B MTCH1 ACTG1 TCEAL2 SERINC3 GNAQ GABARAPL2 TOMM7 C19ORF70 TAGLN3 NDFIP1 RPS28 PSAP HNRNPH2 TMEM14A RXFP1 CHL1 DNAJA1 LINC00116 MIEN1 LMBRD2 RABAC1 CREG2 LPPR4 RTN4R SNN SYT11 MTPN DYNC1I1 VAPB IFI6 HAPLN4 MYEOV2 NAA38 C12ORF49 PTPN20A ATP5I PPP2R2B REEP5 PPP2CB PJA2 NDUFA4 NDUFC2 DNAJB6 S100A13 NDUFA8 ATOX1 YWHAH TMTC1 TMEM130 ATP5A1 EIF1 KCNA1 MORF4L2 NDRG3 MT-ND1 SLC17A7 RPL13 ATP1A3 SUB1 USMG5 TCEB2 ATP6V0D1 RAB6B NAP1L3 MBOAT7 DNAJC5 SLC9A6 CAPZB MAP1A SNRPN NECAB1 NPTX1 EDF1 JAKMIP1 ATP5J2 NCALD NBL1 TPGS2 STK39 MMP24-AS1 STMN2 FASN OXR1 CALM3 CNTN1 ELAVL2 PPP2R4 TGOLN2 AP2M1 NGEF RTN4 GAP43 COX6A1 SLC22A17 COX8A ACOT7 NDUFB7 COX5A TPPP PCSK1N PCDH19 GPX4 NDUFA1 YWHAB MZT1 FBXL16 SCN3B RASGRF1 TRHDE NUDT4 SLC6A17 CX3CL1 MFN2 PNMAL1 EFR3A LANCL1 TMA7 PREPL MAP2K4 STX1B STMN4 HINT1 MTRNR2L1 LMO4 EIF1AX OAT RFK RAP1GAP2 RAB27B RPS27A ATP6V1E1 SLC24A2 PPM1A TALDO1 PRKCE ATP6V0B CABP1 FTL NDUFC1 AK5 SEZ6L2 GRIN2A SYN1 CAPZA2 SNCB SPR MPC2 CAB39 FBXO2 MRPL47 SYNJ1 FAM163B PSMC1 MAGEH1 SYN2 RPL23A SCOC EGR3 ATP6V0C AP2B1 ALDOA DNER MAPRE3 ZNF365 PPP3CA MYL6 MDH1 MGST3 FSTL5 HPCA TUBB3 GABARAP IDS MIF NSF PET100 ATP6V1G2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "pyramidal neuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MT-CO1 MT-CO2 CCK MT-ATP6 SYT1 CALM1 YWHAG TMSB4X THY1 NEFL PSAP STMN2 CADM2 MORF4L1 MT-ND4 SYN1 PREPL VSNL1 MT-ND3 MT-ND2 HSP90AB1 MAP1B ENC1 GAPDH GPM6A MTCH1 TSPYL1 APLP2 RTN1 ACTB NDFIP1 CLU APP SLC9A6 CLTC RPL13A COX7C SYT11 SNAP25 EIF1AX PRKACB EPS15 FAT3 FAM134A SARAF ITM2B OLFM1 CALM3 PGM2L1 ISCA1 GUK1 DYNLL1 TMEM150C PLD3 WBP2 MTRNR2L12 CDKN2D RTN3 GABARAPL2 APLP1 PSD3 FAM84A RTN4 DNAJB6 ATP2A2 LGALS1 PNMA2 MTATP6P1 ATP6V0E2 ATP5J SAP18 SEPT4 GNAQ ATP5E CA10 CRIP2 TMEM155 MAGEL2 RNASEK-C17ORF49 ATP6V1A PPDPF PINK1 SH3GL2 C1ORF52 DPYSL2 ATP6V0D1 DYNLT3 CST3 RAP1GDS1 SERPINF1 PIK3R1 PHYHIP CLTB MRPL51 ENO2 DYNLL2 LDOC1L C16ORF13 MAP7D1 MAP1LC3A NRSN2 HMGCS1 RAB6A SCN3B WDR47 TRAPPC1 SUB1 YWHAQ ONECUT2 SNCB FTL DIRAS1 LMO3 PRNP KIF5A SLIT1 TSPAN7 ATP1B1 SLC30A3 FXYD6 ELMO1 NUDT21 ITFG1 NRGN UQCR10 UBB OCIAD1 ASAP1 CAPZA2 SSTR2 WSB2 PLEKHF1 PPP2CB PJA2 PKM HDLBP IPCEF1 NCAM2 MYL12B NEUROD2 USP5 GUCY1B3 AP3S1 HIGD1A BSG ENSA B3GNT1 SOD1 LYNX1 SYT4 COX4I1 ELAVL2 SELT SNRPE ELAVL4 RAPGEF5 NFE2L1 REEP5 AP1S1 UQCRB ARHGDIG RPS6 OAT TBCB PNMAL1 MAP2K1 CNTN1 HSP90AA1 NDRG4 GABRA1 TESPA1 GDA HINT1 KIAA1045 NDUFA1 RHEB ZMAT2 NMNAT2 NEFM TRPT1 TERF2IP SPARCL1 PEX5L ARL8A RAB40B BANF1 CTNND2 KCNK1 NDUFA4 SLC17A7 AP2B1 CKB VAMP2 CMAS NEFH BNIP3 CADPS2 ATP5A1 HDDC2 RPS5 FAIM2 YWHAH PTPRS NECAB1 GTF3A ATP6V1E1 LINGO1 JUND SV2B TMEM147 NAP1L2 RHOB SNCG UBE2E3 YIPF1 C19ORF43 NRCAM TPRG1L TSC22D1 TOLLIP RASGRP1 CHN1 FNDC4 BEX2 PRKAR1B ATP1A3 HPRT1 KLHDC3 DNAJA1 ATP5C1 SERPINI1 GNB1 CFL1 TMEM59L AP2S1 RCAN2 SPARC TUBA1B PLCB1 CAP2 PIN1 CA11 KLC1 PRKCB ANAPC11 ARF1 TPT1 SYNJ1 RBX1 SNX3 ADAM23 ESYT1 GRINA PCMT1 KCNMB4 PPP2R4 TMEM130 NDUFB1 PSMD8 TKT PPP1R7 FIGN PPP3CA TCEA2 ATP5F1 PPP1CB TMA7 CREG2 MBOAT7 SH3BGRL2 TOMM20 RPL32 PGAM1 AP2M1 EFR3A RPS3A FTH1 CDK5R2 FRZB RPL37A LMO4 YWHAB PPIA TBR1 GDI1 SEC61G RAMP1 LGI3 UHMK1 SUMO3 NTHL1 SIRPA PPM1A MAPK1 CLIP2 MAST3 NDFIP2 ATP6V1G1 TUBB2A HAPLN4 NREP RPL3 RPS28 ATP6V0C C11ORF31 MIF ALDOA RP11-20I23.1 NSF RP11-219A15.1 RPS10 TBC1D15 DNAJC21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "pyramidal neuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SYT1 HSP90AA1 RTN1 SPARCL1 YWHAG MT-CO2 TSPAN7 CLU TUBA1B CLSTN1 SNAP25 PLD3 NGFRAP1 MT-ND2 CHN1 CALM2 CPE MT-CO1 ARL6IP1 UCHL1 ATP6V1B2 TMSB4X TMSB10 DKK3 ATP1A3 YWHAB CALM3 SERINC1 EIF4A2 ITFG1 DPP6 KLC1 ENC1 PRNP TUBA1A NCAM2 CALM1 SPOCK1 MT-ATP6 CLTC HSPA4 ATP6AP2 GAPDH NELL2 PIN1 TSPYL1 ATP1A1 TPT1 HPCA SARAF MAP4 EIF4G2 SCD5 CCDC25 VSNL1 NRGN APLP1 RTN4 NDUFA13 ACTB NDUFA5 CNTN1 GPM6A LSM4 APP EPDR1 MDH1 WASL ATP6V1A MAP2K1 STXBP1 PKM CHL1 UQCRC2 MT-ND3 SCN3B DNAJB6 CFL1 PREPL NRCAM COX7C MAP1B ENO1 GDI1 SLIT1 TUBA4A NRN1 SERPINI1 NDUFB8 HMP19 NAT8L SCAMP5 NSF CAP2 ARPP19 RHBDD2 RPL38 TGOLN2 NFE2L1 TMEM14A MT-ND4 IDS RNASEK-C17ORF49 ANO3 FXYD6 BSG PRKAR1B DPYSL2 CDC42SE2 ARL8A COX7A2 GAP43 C19ORF70 MGST3 SNX10 SEMA3A HSPBP1 CDK5R2 GABARAPL2 SUMO2 BEX1 RPL36A YWHAH WFS1 NEFL FAM3C ATP1B1 BEX5 EFR3A ETV1 SYNGR3 UBE2E3 TMEM160 PACSIN1 SMYD2 SV2B NPTX1 EID1 LMBRD2 PCSK1 SRP14 IPCEF1 SYT11 RPL39 CDK5R1 ATP6V1E1 HS3ST2 NXPH3 MT-CYB SOD1 COQ10B ATP5F1 TMEM230 NRIP3 YAF2 CCDC85B UBE2F UQCRQ CAB39 COX4I1 AP2S1 AP2M1 FSTL5 WSB2 USMG5 COX6C DNAJC6 GRIN2A SNAP91 UBE2N TUBB2A PGRMC1 ATP9A ENSA SUMO3 PHYHIP LMO4 MRPL11 SLIT3 CCT5 CAPZA2 SERPINE2 BCAP31 TMEM155 CA10 PID1 COA3 FAM219A PPP3CA ITM2B SCOC PPP1CB MT-CO3 GUCY1A3 ARHGDIA KCNAB2 PGAM1 IQSEC1 SLC39A10 BASP1 TERF2IP ATP5H SCD PPP2CB NPY2R HPS6 PSAP UQCR11 HAPLN4 SLC17A7 SLC1A2 NDUFC1 AK5 SLC24A2 SLC30A3 PGM2L1 MAP2K4 SAP18 CTXN1 C1ORF52 GRIN1 CCK YWHAQ SLC12A5 RPS5 OLA1 GHITM SUSD4 PRKCG SLC9A6 TENM3 NDUFB10 NUTF2 PPP2CA CSDE1 ARL6IP5 PNKD NPTXR PCDH19 VAMP2 STMN1 UBA52 CADM3 PSMC1 NARS DHCR24 ATP2B2 GTF2B STMN4 CLSTN2 TRIM37 ADRA1D SYT5 AP1S1 GABRA1 CAMK2D SNCG ANXA7 EPS15 UBB PTPRT NCEH1 TMEM130 PEG10 PSMB7 SYNPO SEZ6L2 SPOCK2 INPP5F TOLLIP PJA2 CYB5R3 C11ORF31 LINGO1 NOV PTGES3 ATP5J2 NEUROG2 SULT4A1 COX5B STMN2 ATXN10 ATP5G1 NELL1 DYNLL1 RPL15 DIRAS2 ADSS OAZ1 APLP2 ACTR6 PNMA2 ALDOA PEBP4 KIF5A MYL6 MYL12B CYFIP2 NECAB1 MAPK8IP2 ACTG1 PVRL1 PDE1A RHEB STX1A PRKACB GUK1 PEF1 MPC2 SQLE FTH1 PRKAR1A LIMK1 MTATP6P1 ST20 CFL2 OLFM1 PPIA BEX2 C18ORF32 PTPRN SCG2 MIR6723 BSCL2 MIEN1 NDUFB1 BNIP3 UROS KIF1A TMEM59L MT-ND1 AP1S2 GABARAP ATP6V0C LDHB TUBB TUBB3 RPL13A RPL21 APOLD1 ARF5 ATP6V1G2 RP11-20I23.1 PCDHAC1 PCDHA9 PCDHA10 PCDHA4 PCDHGA5 PCDHGA10 PCDHGA6\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "pyramidal neuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO2 MT-CO1 MT-ND4 MT-CO3 SNAP25 SYT1 CALM2 MAP1B MT-ND3 GDA FTH1 PSD3 CALM1 MT-ATP6 TUBA1B IDS ATP1A1 LMO3 GPM6A YWHAH SYT13 EPS15 GNG3 MT-CYB UBA52 VAMP2 CLSTN1 CALM3 MT-ND2 OLFM1 RGS4 MTCH1 SUB1 PPP3CA SLC39A10 CLU ATP1B1 PPIA CHN1 CBX6 GNB1 MAPK1 LINC00086 RTN4 TBC1D15 MTRNR2L1 PRKAR1A ATP5G1 PRDX2 PRKACB SNCA GAPDH ATP2A2 DYNLL1 ELMO1 MT-ND1 PRKCB GNAQ OPA1 PRNP NDUFC2 SV2B MTRNR2L8 NDRG4 ZBTB18 MAST3 COX6A1 CCK HSP90AA1 NRGN ACTG1 KIF1A BNIP3 CDK5R1 NAT8L LMBRD2 STX1B TBCB DYNLT3 CADM2 OAZ1 MRPS21 VSNL1 LMO4 RAB6A PLCB1 ARL6IP1 HSP90AB1 MTRNR2L12 SCN1B AP2M1 GABARAPL2 MTATP6P1 RNF11 SNX10 NAPB RNASEK-C17ORF49 REPS2 GUCY1A3 TRIM37 TCEA2 PITHD1 STK24 NAPA ATP6V1A MYRIP SLC22A17 PPP2R2B ITM2C HDLBP MAGED1 GLRA3 RAP2A CTNND2 ATP6V0C ATP5B DYNLRB1 SERPINI1 ITFG1 RAB3C ATP2B2 NDUFS5 ATP6V1B2 NCAM2 CCDC184 VEGFA NECAB1 HMGCR PSMD8 NEFM BEX1 DIRAS2 UBL5 ENC1 ARL6IP5 NME1 RPL41 RP11-20I23.1 RAB40B SYN2 DYNLL2 MAP4 NEFH PJA2 CERS6 RBX1 SCN5A PPP2R2C SNRPN RIT2 STMN4 SYT11 COX7A2L TEX2 ATP5H CMAS POLR2I SH3BGRL2 TGOLN2 UHMK1 PTK2B SERPINE2 TUBB2A ATP6V1C1 NDUFV1 FAIM2 RPL13 MAP2K4 TMEM150C CISD1 CSDE1 WBP11 ATG101 CBLN4 SNAP91 PITPNA STMN2 ANAPC13 USMG5 PFDN1 EGR3 B3GNT1 MRAS RAN SPARCL1 CREG2 MTPN NPTXR FBXL15 TPI1 NUDT21 UBE2N EIF1 RHOB FAT3 AP3S1 MT-ND4L BAG4 KLC1 DNAJA1 RTN1 LIMK1 TSPAN7 AURKAIP1 CDC42SE2 RORB FAM19A1 GNG2 NHP2 SEZ6L MAP1A SERINC3 ATP6AP2 STXBP1 CLIP2 COX6C VGF RAPGEF5 PCMT1 NRIP3 DCC PCDH19 PTMA CABP1 LPPR4 FARSA PTPRS ZFAND5 REEP5 SUMO3 PPP3R1 TRAPPC1 TSC22D1 DPYSL2 KCNV1 CX3CL1 ID2 YWHAG RABAC1 KIAA1045 ADSS LHX6 DNAJC6 KCNAB1 RHEB CLTC RASGRF1 RTN3 HCN1 RPL38 RPL23A SYT4 CST3 NDUFA5 GRIN1 IQSEC1 SPTBN1 C1ORF115 RPL31 ACTB TMSB10 ADAM23 PPP1CB MRPL37 ASAP1 PEBP1 KIF21A CTSD COPS8 ATP1A3 TMOD2 ARPP19 SNN DLC1 DMTN CHGB ENKUR PSMD12 CNR1 TMSB4X MORF4L1 LYNX1 HINT1 C1QBP SARAF SSBP3 RPS15 EFHD2 UBA1 EID1 PI4KA LANCL1 PIK3R1 TMEM14A RPS4X COX6B1 ANO3 CFL1 YWHAZ SCD5 TSPYL1 TMX4 YWHAB BRK1 ITM2B STMN3 NDFIP1 TRIM36 NUAK1 PFKP B2M PVALB MIF ALDOA NSF MTRNR2L6 RPL13A C11ORF31 PCDHGA5 PCDHGA6 PCDHGA10 PCDHA9 PCDHAC1 PCDHA10 PCDHA4\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "pyramidal neuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 CHN1 MT-CO2 MT-CO3 SNAP25 MT-ATP6 GPM6A SYT1 NRGN MT-ND3 CALM1 MAP1B RTN1 SCN3B GNAQ ENC1 MT-ND1 PRNP RTN4 CALM2 RTN3 TSPAN7 CAP2 CLU PSD3 MTRNR2L12 ATP1B1 MT-ND4 PSAP SPARCL1 ATP6V0B DIRAS2 SEPW1 PJA2 ATP6V1B2 YWHAG KIF5A ATP1A3 BASP1 B3GALT2 PREPL DPYSL2 MT-ND2 PPP2R2C MAPK1 DYNLL1 AK5 MAST3 EIF4A2 MTRNR2L1 SLC17A7 TUBA1B ITM2B EFR3A PTMA SERINC1 ATP6V0C RP11-20I23.1 IDS ATP6AP1 UQCRH PGM2L1 ATP2A2 HSP90AB1 ATP1A1 ENO2 PGAM1 PLD3 ATP2B2 ACTB CYFIP2 RAB3A ATP5I RPS28 PKM RAP1GAP2 VDAC1 ITFG1 NEGR1 APP SV2B OLA1 PPP3CB PPP3R1 CAMK2D THY1 PDP1 MAP4 CKB MTRNR2L8 STXBP1 COX4I1 NFIA SARAF TLE4 TSPYL1 SERF2 ALDOA PRKCB SEMA3C FAM198B KLC1 RGS4 SYN1 PEBP1 SLC8A2 APLP1 GDI1 C1ORF115 SUB1 NELL2 SCAMP5 MAGED1 CLSTN1 CDK5R1 TM2D3 EIF1 SLC25A6 CTGF PRKACB PRKAR1A NDRG3 OLFM1 TMEM59L CTD-2026G6.3 CDH24 KCNAB2 PHYHIP HSP90AA1 MTCH1 VSNL1 SUMO3 MDGA1 MAOB TUBA1A TMOD2 RFK GHITM TBCB GRIK3 CALM3 RASGRF2 YWHAZ CAMK2G PTPRN TMEM130 RBX1 UBE2QL1 BNIP3 PLCB1 FAIM2 RAB6B SYN2 NIPA1 PSMC3 AP2B1 DGUOK ACTG1 GRIN2A TSPYL5 ARPP19 MAPRE2 SCG2 COX6A1 NPTX1 GPX4 SYT11 NGFRAP1 NDUFV1 CAMK4 LPPR4 BSG AP2M1 NDRG4 HK1 MTRNR2L6 SPOCK2 RASGRF1 MAP1LC3B GPR158 SYT3 CYC1 SULT4A1 REPS2 HOMER1 ATP6V1E1 NUAK1 SLC22A17 GLO1 ATP1B2 TSC22D1 PPIA COPE COX5B SPRYD3 RPL37A ETV1 PFN2 FSCN1 AP1S1 CDK5R2 PVRL1 CBLN1 SYNPO KCTD12 RAB2A ELAVL4 NDUFA8 GOT1 NRIP3 RAPGEF5 DSTN GSK3A SNN OXCT1 EFHD2 UBE2M CMAS LYNX1 BAI2 SNCG RP11-111M22.2 TMSB4X PRKAR1B TMEM117 SYNGR3 NNAT CX3CL1 ASAP2 RLIM HS6ST2 ALDOC DNAJC5 KCNC2 PDE1A LMO3 ARF1 PPP1R9B MORF4L2 CPNE4 PTHLH CPLX2 LDHB CLTB SPTBN1 YIPF1 DYNLRB1 RPL11 GABRA1 ISCA1 BCAT1 YWHAB SLC9A6 MAP2K2 SYT5 STMN2 KCNV1 RPS3A TMSB4XP4 REEP5 OLFML2B CPE FBXL16 CISD1 CBX6 RPL38 FAM149B1 CCDC85B MTATP6P1 UROD CLSTN2 CETN2 STK24 HS3ST4 SNAP91 POLR2M ARHGAP35 IPCEF1 SRP14 PNMA2 TUBB2A TCEAL7 NCOA4 VWC2L SNCA SELT DYNLL2 MT-ND5 ANXA6 PET100 FAM162B ATP5C1 KIF1A DEXI ZBTB18 ACTR10 NEFL MYZAP BCAP31 TSPYL4 ATP5A1 ATP6V1A SNRPN CRTAC1 FKBP1A TCEAL2 TBC1D15 C9ORF16 MTPN NPTN PCBP1 ATP6AP2 OXR1 TBR1 MRFAP1 C6ORF1 GFRA2 COPRS SMIM13 PFKP CABP1 C14ORF132 GABRA5 ENO1 SSTR2 RPL15 NAP1L3 PRKCG LZTS1 SERPINI1 ERH PGK1 SLC12A5 SYT4 PCMT1 PNMAL2 SLITRK1 ATP6V0D1 MAP1LC3A DNM3 UQCR10 RPL21 VAMP2 TMA7 ARHGDIG RAB6A ANXA7 PCDH17 PTPRN2 LANCL1 ATP6V1C1 USP5 ETFB TMTC1 MPPED1 PGRMC1 SPRN CCK SERPINE2 EPHB6 SNCB PPP3CA MCHR2 FGF12 OPCML CTNND2 NDUFS5 PITPNA CADM2 CDH8 CLIP3 FKBP4 LMBRD2 ARL6IP1 RCAN2 GSKIP APLP2 STMN3 STMN1 IMMP1L UQCR11 NDUFC1 UCHL1 C11ORF31 DCLK1 INPP5F NAPA PTK2B DKK3 ARL6IP5 PHYHIPL UQCRC2 FAM174A UBA1 ELMO1 VWA1 VDAC2 MT-CYB PEA15 NDUFS6 LGI3 VAPB SCD5 CTXN1 RRAGA ATP5G2 BRK1 CAB39 SLC6A17 RBM20 INSIG1 TPI1 CREG2 TMSB10 TKT KRAS DRAP1 RAD23B AP2S1 TAGLN3 OAT GUCY1B3 CORO2B MYEOV2 MMD PSMC5 NDUFB10 NINJ1 SEZ6L2 RPS4X TOMM20 C2ORF80 ZFAND5 PPP2CB RNASEK-C17ORF49 TUBB3 ARF5 NGRN PCDHA4 PCDHA9 PCDHAC1 PCDHA10 PCDHGA6 PCDHGA10 PCDHGA5\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "pyramidal neuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-ND2 MT-ND4 MT-CO3 MT-CO2 MT-ATP6 SNAP25 CALM1 ENC1 ATP1B1 MAP1B FTH1 MTRNR2L1 MAP1A SEPW1 SYT1 MTATP6P1 MTRNR2L12 ATP2B2 PPP3CA UHMK1 ACTG1 CALM2 SPARCL1 MT-CYB BSN LMO4 PAK1 NUAK1 PNMA2 CKB CALM3 GABRA1 MT-ND4L LDHB NRGN TMSB10 NRN1 GRIN1 ATP9A OLFM1 RTN1 SYT4 TOMM20 SCN3B SUMO3 MT-ND1 MAPK1 GNB1 KIF21A PFKP STMN1 NPTXR GNG2 SLC38A1 REEP2 GNAQ HMGCR TSPAN33 RPL12 SNCA PRKCG PHYHIP RBX1 TRIM37 MTPN ENSA ZBTB18 CHN1 RAB11A GRIN2A UBE2V2 KIF5A NDRG4 MT3 NHP2L1 RGS4 SLC39A10 CREG2 CHL1 STMN2 NECAB1 PSD3 TMEM258 SYNGR3 TSPYL1 YWHAH SPOCK2 CLTC PEX5L TMSB4X NAP1L2 MORF4L1 APP MTRNR2L6 ATP6V0D1 HSP90AB1 ELMO1 PPP1R7 SLC30A3 THBS4 OLA1 RHOB RTN3 COX6A1 VAMP2 NEFL GOT1 NDN DIRAS2 PAFAH1B2 PACSIN1 KCNMB4 SPTBN1 PCDHA10 CD59 SERPINI1 CAP2 IDH3A SEZ6L ATP1A1 ARF1 TOMM70A GPM6A HN1 SLC17A7 MAP2K1 SPHKAP CLEC2L GUCY1B3 CD99L2 ARF3 NCALD SERPINE2 CA11 KCNA2 TIMP2 NGFRAP1 SH3BGRL3 BASP1 DNM3 GDI1 EIF1 PCSK1N STX1A ATP6AP2 TPD52 NEGR1 PIK3R1 NSF TEX2 RTN4 AES SLC25A22 UBQLN2 CTXN1 SCAMP5 RASGRF2 TCEB2 TSC22D1 SKP1 UBB GSTO1 SRP9 UBA52 ARFGAP2 NPAS3 RPL18A CNTN1 PINK1 EXTL2 KRAS EIF4G2 WASF1 GPX4 UBA1 EDIL3 UQCR11 PGRMC1 WDR47 NRCAM HS6ST3 CIAPIN1 MFSD6 PNMAL2 UQCR10 SNAP91 RPS2 THY1 VDAC2 KIF1A NDUFC2 SPRYD3 CPLX1 GUK1 FASN ZNF365 UQCRH COX6C BEX4 PRKCB PAQR8 RPS19BP1 AP1S2 DMTN INPP5F RPS15 AP2M1 RPS6 NCOA4 FKBP1A PDP1 DCLK1 RPL37A PPDPF KIAA1045 RPS28 FKBP8 TRIM36 PGM2L1 STK24 CDK5R2 DNAJA1 FAM131B IMMP1L VPS35 ITM2B NDUFA13 RAB27B MGST3 LDB2 ARPP19 OXR1 UBL4A FAM174A RAPGEF5 SLC9A6 RHEB ENO2 SULT4A1 FABP3 PLD3 SERINC3 SNCG ANXA7 DCTN1 PPP3CB FAIM2 C19ORF10 TPPP MT-ND3 FBXL16 MAP7D2 APLP1 FAM19A2 DSTN DYNLL2 CLTA ISCA1 SNX3 GSK3A AK5 DBNDD1 PTPRN KLC1 NDUFB1 YWHAZ ARHGAP35 PTMA MDH1 TBCB CCK IDS ATP6V1E1 PRKCE SGCD ZFAND5 EID1 PHB PRKACB COA3 TCEAL3 DDN UQCRB DPP6 SEZ6L2 MARCKS PPP2R1A RCAN2 ACLY TUBA4A KLF10 MTRNR2L8 SH3GL2 SPOCK1 LINGO1 TMEM150C NGRN TPT1 ATP6V1A PPP2R2C DGAT2 RAN CDH8 RAP2A CRIP2 CADM2 SLC12A5 OAZ1 CMAS NAPB SGK223 TUBB ALDOA ATP6V1G2 PCDHGA6 PCDHGA10 PCDHGA5\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "pyramidal neuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: CALM2 MT-CO1 CCK SYT1 MT-CO3 CLU MT-ND4 MT-CO2 GAPDH ATP1B1 TUBA1B VSNL1 MAP1B ARL6IP1 NRGN RTN1 APP PREPL MT-CYB RTN3 HSP90AB1 CLSTN1 PPIA MT-ND1 SNAP25 PKM ARPP19 FTH1 OXR1 CALM3 CALM1 RTN4 ACTB LMO4 STMN1 PEBP1 HSP90AA1 CKB RNF11 GABRA1 TSPYL1 DYNLL1 SPOCK1 NEFL NAPB TUBB2A MT-ATP6 TPI1 CHN1 OAZ1 PPP3CA NECAB1 FAIM2 CFL1 PRKAR1A PRKACB SNX10 COX4I1 TMSB10 ENC1 ACTG1 MTRNR2L12 COX7B MLLT11 CLTC GDI1 STXBP1 BEX1 VAMP2 TMSB4X YWHAB SNRPN RAB3A ATP6V0C NRCAM UQCRH CA10 RAB6B MFSD6 SNX3 DNAJC6 MTRNR2L8 FXYD6 TAGLN3 CRYM BNIP3 OLFM1 ATP5B CEND1 MAP1LC3A PGAM1 RP11-20I23.1 PRNP ATP6V0E2 ITM2C SYT4 PPP3CB UCHL1 GPX3 SERINC3 UBL5 GOT1 PGRMC1 KIF5A LGALS1 EIF4A2 RHBDD2 AP2B1 TUBA4A HAPLN4 ENO2 CA11 SPARCL1 RPL15 PPP2R1A THY1 APLP2 SEPW1 TSPAN7 ISCU PPP2CA COX6B1 MAP4 ATP1A3 MDH1 ARF5 COX6A1 NDUFS5 NNAT NAP1L2 EIF1 PSD3 DPYSL2 TUBB4A PJA2 DKK3 ALDOC RAB2A TSC22D1 YWHAG YWHAZ MT-ND3 EPHB6 GPM6A LAGE3 HIGD1A ATP5G3 KLC1 SOD1 SLC17A7 GRIN1 NDFIP1 AP2M1 YWHAH NDRG4 GUCY1B3 CDC42SE2 GRIN2A GABRA5 NELL2 MTRNR2L1 MAGED1 DYNLRB1 PNMA2 CADM2 UBE2N NGFRAP1 NMNAT2 EIF1AX SCN3B SLC12A5 IDS MIF PSAP GDE1 RPH3A COX6C YDJC SPRYD3 TXN KIF3C SNAP91 MRFAP1 FBXL15 UQCRC2 IQSEC1 ASPDH CABP1 MORF4L1 ATP6V1C1 SCD5 PLCB1 VAMP1 RLIM PSMB7 IDI1 ATP5J MAPRE3 ITFG1 ARL4C ATP6V1B2 GNG3 NAPA SEZ6L PTK2B MAP1A NUDT4 EIF1B KCNC2 PGK1 RNASEK-C17ORF49 C4ORF3 PRDX2 STMN2 ATRN SYT5 GAP43 SYT11 PPP2CB SARAF ACTR10 BRK1 FGF12 TERF2IP SYT13 RPL35 CAMK2G UBE2QL1 INPP5F CTSD RHEB UQCRB FKBP8 RABAC1 INSIG1 SCN1B KLC2 ITM2B C14ORF2 SLC38A1 PEX5L FKBP1A MYL6B NSF RPL31 MAP2K4 MT-ND2 CTNND2 UBE2E3 RPL41 RANBP1 SNCA VPS35 SLC22A17 RAB6A PDP1 SUMO2 NARS CPE MRPS21 CNTN1 NAP1L5 CADM3 EIF4G2 SLC39A10 PDE1A INA TCEAL7 SERINC1 ATP5A1 PSMB3 NDUFC1 SKP1 SCG2 HMP19 NDUFA13 FAM127A CHL1 BCAP31 SYN1 PSMD8 NUAK1 UQCR11 ATP1A1 SELM D4S234E PFN2 VDAC1 CAB39 CDH8 DNM3 NCALD TM2D3 SLC25A5 BSN COX5B PPP1R9B BASP1 TUBA1A STMN4 OST4 PRKCB GPX4 RRAGA ATP5C1 TPRG1L RPS28 SRP14 SERPINI1 PRKAR1B SYNPR FIBP STMN3 TMEM130 ATP5I CAP2 UBA1 ALDOA ARF1 COX8A NFE2L1 DUSP6 C12ORF49 NDUFA11 IGSF21 GNB1 AP1S2 MSMO1 TAGLN2 ATP6V1A FKBP4 SYNPO B3GALT2 HSPA8 FARSA RAD23B CAPZA2 C1ORF52 TMEM141 ADD2 COL5A2 TSPYL5 ARL1 SSBP3 CCT5 NCOA4 PPDPF CAPZB OPCML PRDX1 UBC SLC8A2 DEXI NGEF LINC00086 ZNF425 CLDND1 CSDE1 CBX6 CDK14 EFHD2 BEX2 NBL1 COPS7A GSK3A ETS2 DCLK1 C2ORF80 AP2S1 MAST3 LYNX1 STXBP6 FSTL5 NDUFA12 VDAC2 FAM3C GSKIP TPT1 DIRAS1 JUND AGT ATP2A2 NGB MRPL52 CISD1 BTBD1 JAKMIP1 ATP5E SMAP2 ATP6V1F DBNDD1 FBXO2 DMTN PIN1 CDH22 LMO3 PARM1 EXTL2 SMIM12 RPL37A AKAP12 ARL8A DNAJA1 HPCA PDE1C KCNA2 RBX1 ATP5O RGS4 ENSA PTPRN ESYT1 NWD2 PRUNE2 S100A6 RCAN2 NDUFA1 PHPT1 SCAMP5 APEH RPS27A SH3GL2 RPL11 SLC19A1 RPL13A EPB41L3 RPL17-C18ORF32 PGM2L1 RPL18A MCHR2 COX7A2 COA3 FJX1 MAPK8IP2 OCIAD1 DIRAS2 FAM131B COPRS SPCS2 RTN4R NDUFV1 DHCR24 HOMER1 NEGR1 SLC9A6 NDFIP2 MORN2 ATP2B2 PFKP NDRG2 CAMK2N2 COPG1 SERF2 CYB5R3 SAP18 PFDN1 RPL6 PPP2R4 STK24 GRINA RORB CREG2 C9ORF16 RPL39 NPTX1 FILIP1L WASL TMEM230 CD59 NAT8L VDAC3 PTPN20A GHITM MORF4L2 MTRNR2L6 MBP NPTXR PPP1CB COX7A1 SLC25A11 C1D RPL7 DSTN MED10 RAB5C REPS2 NIPA1 CORO2B NEUROD6 PHYHIPL LHX6 MPI CERS6 CCDC184 SYN2 NEUROD2 TMEM120A ATG101 FSCN1 RAB11FIP5 SLC25A4 PHYHIP HTR2A PNMAL2 MIEN1 ID2 KCNF1 NDUFC2 ZFAND5 NDUFA5 GPR37 BAG4 SELT CDK5R2 ATP6V0B C1ORF233 TUBB3 CHP1 FIS1 NGRN TBCB NOP10 ATP9A SYNJ1 CDHR1 SYT10 CDKN2D UBE2D2 SEZ6L2 NDUFB7 CHMP5 COMMD6 PSMB5 PSMC1 RAP2C BSCL2 CLIP3 CHCHD2 MGST3 PIK3R1 TRIM37 PPP1R7 NDUFA4 RAB4A KIF1A ATP6V1E1 H2AFZ DNAJC4 CRIP2 NCEH1 TBCA YIPF3 LIMK1 CAMK2D SH3BGRL2 MANBAL BAI2 GPCPD1 GRM3 ATP6V0D1 NDUFAF3 NRSN2 ETV1 CLTB NRIP3 LDB2 CYCS NDUFB11 ATP5G2 TMEM14A ARL6IP5 ACOT7 TCEAL3 HK1 LPPR4 ANXA6 SNX17 C19ORF53 EID1 SUB1 ATP6AP1 RAB11A RAMP1 USP5 MTATP6P1 ARPC5L RAB31 NEFM MAL2 NDUFAB1 MYEOV2 GNAQ RHOB EPS15 ATP6AP2 SCOC HSD17B6 RPS6 ELAVL4 PSMD2 ELAVL2 SLITRK1 FAM84A TCEB2 TCEB1 NTNG1 SPOCK2 ABHD14A PNMAL1 EPDR1 GLRA3 C19ORF70 PSMD12 CAMKK2 PTGES3 HS6ST2 CDK17 RPL17 ARL8B EDF1 CBLN4 TRIM47 MLF2 NCDN SNCG RASSF3 SSTR1 PAK1 PFDN4 COPE NDUFB8 PLD3 RASGRF1 TMEM35 FBXW11 SNN KIFAP3 RPL13 TPPP ATP6V1G1 SNRPE LSM4 IPCEF1 FAM219A ARHGDIA RPL38 OPA1 NAA38 RP11-219A15.1 RPL36A ATP6V1G2 RPL21 DNAJC21 TBC1D15 PCDHGA10 PCDHGA5 PCDHGA6\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "pyramidal neuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MT-CO1 MAP1B MT-CO2 SYT1 MT-ATP6 SNAP25 CHN1 MT-ND4 VSNL1 YWHAG PREPL MT-ND3 NRGN ENC1 YWHAH TSC22D1 CLU GPM6A TUBA1B MT-ND1 CCK SPARCL1 CALM1 MT-CYB RTN3 RTN4 RTN1 THY1 BASP1 GAPDH PRNP MT-ND2 SNCA TMEM130 CLSTN1 RAB6B ATP1B1 HSP90AB1 PTK2B ATP6V1B2 ACTB SLC22A17 CALM3 MTATP6P1 OLFM1 ARL6IP1 APLP1 NPTN STXBP1 NAPB MAPK1 ATP1A3 VAMP2 PRKCB RGS4 RAB3C GDI1 PGAM1 CALM2 TSPYL1 SH3GL2 AK5 ARHGDIG CREG2 UCHL1 NEFM SARAF TOMM20 GRIN1 NAT8L PKM PPP3CA APP RPL13 AES DPYSL2 RPH3A ELAVL2 NEFL PRKACB EIF1AX CPLX2 NDUFB5 SCAMP5 SPOCK2 PSAP IQSEC1 SLC12A5 ACTG1 PDP1 LDB2 PPP3R1 FAIM2 NUAK1 NDFIP1 MTRNR2L12 RPL35 NECAB1 FTH1 CNTN1 YWHAB CPE LMO4 RPL41 CKB SYNPO CADM3 PPIA CADM2 SERINC1 TSPAN7 RNF11 GRIN2A MGST3 SLC17A7 TMSB4X ARPP19 NGFRAP1 CEND1 SCN1A UQCRH FLOT2 ATP2B2 SYT4 HMP19 INA SV2B STMN2 KCNC2 NSF GDA ATP9A VDAC1 SLIT1 PGRMC1 ARF3 PRKCE MTRNR2L8 ANXA6 CAMKK2 PCDH17 ATP6V1A FTL STMN3 GABARAPL1 SNRPN FXYD6 RAD23B TMX4 NDUFS5 MAPRE3 HIGD1A PGK1 SRP9 TUBA4A CYFIP2 SYT11 PCMT1 PFKP REEP5 KLC1 PHYHIP MDH1 COX5B SERPINI1 CAMK2G NDUFB7 TUBA1A NDUFA11 EID1 RAB3A NEGR1 CCDC85B ARL8B UBE2N YWHAZ UBC MTCH1 NCDN PLCB1 IDS SYNGR1 GUCY1A3 CMPK1 TBR1 ITM2B ERH DYNLL1 SPCS2 PEX5L WSB2 DLD DNAJB6 CYCS ELAVL4 SEZ6L2 ATP6V1E1 SPOCK1 MTRNR2L1 RAP2A TOLLIP OCIAD1 KIF5A PPP2R1A SULT4A1 TMEM14A PJA2 ENO2 DHCR24 PSMD12 VPS35 ELMO1 PRKAR1B PPP2CA GUK1 SKAP2 DYNC1I1 COPG1 MTPN SLC9A6 STX1B SYN1 TEX2 ACP1 VSTM2A CBX6 LYNX1 CMAS DYNLL2 TRIM37 GPRC5B LGI3 LYSMD2 RPS3A PCP4 TMEM151A OXR1 AURKAIP1 ATP2A2 DCLK1 YBEY TPPP GPX4 SEZ6L EIF1 TMEM70 CDK17 PI4KA TSPAN33 GPCPD1 RRM2B CABP1 DYNLRB1 RPS26 MRPL12 MAGEL2 PNKD MBOAT7 CNR1 FAM134A YWHAQ SERPINE2 NAP1L2 PRKCG BLVRB DDN FKBP1A RPL32 ARL4C ETS2 COX7C PEBP1 ATP6V1G1 DPP6 RAPGEF5 KIF2C NDUFB8 AP2M1 WASL ACOT7 CCDC124 CYB5R3 NDUFB1 DKK3 JUND RAB7A FSCN1 CLTA PAK1 DNAJC5 SOSTDC1 EIF4G2 MRPL37 PLD3 HN1 NPTX1 KIF3C MAPK8IP2 PNMA1 CLIP2 RASGRP1 CAP2 TM6SF1 OPCML TOMM22 COMTD1 S100A6 ATP5F1 GUCY1B3 OLFM2 ALDOA HINT1 NCEH1 INPP5F BSCL2 PSMD2 DNAJC6 DCC C1QBP SLC7A8 HMGCS1 HSPA8 FAM163B CTNND2 ONECUT2 CAPZA2 TUBB4A VGF RASGRF1 CAPNS1 GSK3A RNF208 ABHD8 RPL3 GSTP1 TMEM158 HPRT1 MORF4L1 CCT5 NDUFB2 SYT13 CD99L2 SLC39A10 GOT1 HTR2A MYL6 GNB1 FAM3C ATP5C1 PITPNA SLC25A6 TUSC2 CHP1 PCDH8 BEX2 ID2 SERINC3 SPTBN1 RHEB MYO1B SEPW1 TPI1 TESPA1 FAT3 PAFAH1B2 MRPL55 SLC25A22 RAP1GAP2 RBX1 SNCG MFN2 SLITRK1 PNMAL1 RCAN2 CTBP1 KIF1A B3GNT1 ITFG1 RORB PPP3CB TSPYL4 AKAP12 RRAGA NDUFA13 HSP90AA1 KCNV1 CORO2B ZNF385D KCNAB2 LIMK1 NDUFB10 UBE2E3 ALDH5A1 FBXL16 TCEA2 PSD3 MT-ND5 CNTN6 BTBD10 PPP1R9B CHMP4B TMEM59L HK1 FAM127A MAPRE2 TAGLN3 MPPED1 POLR2I COX4I1 FAM43B RPL15 ATXN10 ZNF365 HTR1F GNG3 PSMC3 LANCL1 APLP2 ATP5I ARF1 ARL2BP BEX4 CNTNAP5 NDUFA4 CX3CL1 EPHB6 WASF1 IDH3A SSBP3 PHB NCALD BLOC1S1 ANO3 NELL2 KIFAP3 DCTN1 MSMO1 BEX1 CETN2 RPS27A LGALS1 MAL2 RASGRF2 TERF2IP RAB6A RPS15 RPL10A NDUFC2 FKBP8 EDF1 NBL1 CHRDL1 SMIM13 MAST3 C1ORF233 TGOLN2 ANXA7 CBLN4 ENSA EEF1A2 KLC2 CHL1 QDPR CTNNA2 PFN2 RPL26 LMBRD2 VEGFA NGEF SYN2 RABAC1 CPLX1 VSTM2L EGFL7 GABRA1 COPRS ADD2 PTGES3 SLC25A4 NDUFA2 BAALC UROS CLDND1 MT-ND4L NAP1L3 ANAPC11 ZBTB18 FAM219A NDRG3 BAG4 GHITM APBB1 COX6B1 RHOB EPB41L3 ATP6AP1 SPRYD3 NPTXR ITM2C MRPS28 MTRNR2L6 TUBB PCDHA10 PCDHA4 PCDHAC1 PCDHA9 PCDHGA6 PCDHGA10 PCDHGA5\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "pyramidal neuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-ND2 MT-ND4 MT-CYB MT-ND3 MAP1B MT-CO2 NRGN CALM1 SYT1 MT-CO3 RTN4 ENO2 DPYSL2 PREPL RTN1 LDB2 MT-ATP6 CCK TSPYL1 ATP1B1 ARPP19 RTN3 TUBA1B CLU MTRNR2L1 RPL3 AES PPP2R2B SNAP25 VSNL1 RAB3C TMSB4X PSAP APP NDRG4 PJA2 BSG AK5 SYT4 COX5B RPL8 CALM3 CALM2 PRNP CERS6 YWHAB ATRN GPR158 ETS2 YWHAH RPS15 STMN2 ENC1 RPL32 VAMP2 MT-ND1 FAIM2 YWHAG DPP6 CKB NUAK1 KCNAB2 SPOCK2 MTCH1 DKK3 TPI1 GPM6A NGFRAP1 NGEF DNAJC5 NMNAT2 ZBTB18 GAPDH C4ORF3 MTRNR2L12 MTRNR2L8 ATP6V0C RP11-20I23.1 IDS LINC00087 WSB2 TOMM20 TERF2IP FAM84A TPPP EIF4A2 CLTC CFL1 PTK2B RHEB GABARAPL2 PRKACB WBP11 ATP2B4 CHN1 MTRNR2L6 SKP1 PNMA1 RASGRF1 CA11 PTMA NDUFS5 CPE SUB1 LPPR4 GPX4 NREP NFE2L1 CEND1 CAPZA2 PFDN1 PGK1 BNIP3 DCTN1 NPTX1 HSPBP1 PRKAR1B FAT3 DYNLL2 ATP5H BCAP31 FTH1 CMPK1 SULT4A1 ARL8A MLF2 NEFL SNCA HSPB1 SLC17A7 NELL2 SSBP3 NDUFB2 TMEM59L BAG4 SLC12A5 KIF1A BEX5 RBX1 TMEM130 FXYD7 PPP2R4 GHITM WBP2 MIF COPRS ARF5 SLIT1 TPD52 EGFL7 OLA1 NARS GNG2 C9ORF16 ATP6V0B KITLG PEA15 EGR3 CALB1 OAT C14ORF2 UQCR10 SELT ENO1 CADM2 PSMC5 SERINC3 LDHB ACOT7 CDK5R1 ALCAM RABAC1 RNF208 UBE2M ARL6IP1 ANO3 STRAP APLP2 TXN PCDH19 PGM2L1 PPP3CB GAP43 SNX3 ATP6V1B2 TUBA1A PPP3CA ATXN10 WBSCR17 RAB6A FRMPD2 EIF1 SV2B PACSIN1 MSMO1 SRP9 BRK1 GPR116 RPH3A DNM3 LMO4 RAN AP1S2 GDF10 PEBP1 DYNLL1 TESPA1 MAP2K2 NWD2 H2AFZ REPS2 GRIN1 CHL1 UBB COX7C SEPT4 NCALD RPS12 TOMM70A CITED2 ATP5G1 CLSTN1 RELL2 MED10 HMGCR PHYHIP SYT11 YWHAZ PAM CD59 UCHL1 CYCS JUND TSPAN7 PEX5L CRKL VPS35 GPX1 CNP KIF5A CYP1B1 SLC22A17 ATP5E CYFIP2 CTNNA2 SLC39A10 SUMO2 SLC9A1 PRDX2 PPDPF NDUFA4 ARPC5L LINGO1 CREG2 PKM LRP1B DNAJB6 GNB1 NECAB1 PRKCB C1ORF52 AZIN1 SLC30A3 AP2S1 GSK3A BEX1 BLOC1S1 UHMK1 SARAF ZNF365 IPCEF1 FIBP SUCLA2 GUK1 CPNE8 SPTBN1 RAB3A ACP1 COPG1 ATP1A3 ZFAND5 RPL13A NDUFA13 SLC9A6 ATP5F1 FAM19A1 TSC22D1 NUDT4 RNASEK-C17ORF49 BSCL2 RPL21 ATP6V1G2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "pyramidal neuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a cell. Your task is to predict its response to the drug Erlotinib: [resistant, sensitive]. Make your choice in format 'Final Answer: resistant' or 'Final Answer: sensitive'.\n{gene_names}: MALSU1 MT-TD MT-CYB MT-CO2 RBM4 MT-ND4L MT-CO3 KRT77 RPL24P2 HSP90AA4P MT-ATP8 NEBL LAMB3 H2AFZ ITGB1BP1 PSMD4 MRPS16 CDC42EP4 ASAH1 MT-ND2 LUCAT1 CD46 DCAKD CCT6B PABPC1L USP24 AHRR DNAJA3 DUOX1 C11ORF58 EIF3E OCEL1 SEMA3D CMTR2 FAM219B MYL6B ZBTB10 ZNHIT1P1 UBL5P1 VAPB ADCK3 MT-ND3 MYO1C NDUFC2 FAM120AOS HSPEP1 METTL9 PTTG3P FBLIM1 NFKBIA KIAA1737 CCDC88B YJEFN3 SLFN5 ADAM10 FOS SRD5A1 HELB HSP90B2P CMC2 ATG12 PRPF39 KRT80 CLIP1 C10ORF88 NT5C2 SEC22A ZFAND1 PRIMPOL RP11-183C12.1 AGL UCHL3 FGFBP3 KIF2C RPS6KA1 MOK FSTL3 NUDT3 RPF2P1 ZNF432 PSAT1 PLTP RAE1 RP11-1094M14.1 LLPH ITSN1 SERPINI1 RPL35AP FLNB-AS1 DOC2A ADIPOR2 NUMB CASP9 BNIP3L TMC5 DLGAP1-AS2 MRPS27 MGST2 RAB11FIP4 TPT1-AS1.", "role": "user" }, { "content": "resistant", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a cell. Your task is to predict its response to the drug Erlotinib: [resistant, sensitive]. Make your choice in format 'Final Answer: resistant' or 'Final Answer: sensitive'.\n{gene_names}: MT-TD FTH1P1 FTLP1 MT-CYB MALSU1 PABPC1L MT-CO3 RPL37A MT-CO2 RPL13A RPL13AP17 GAPDHP1 MT-ND4L RPLP1P13 RPS14P3 RPS12P15 RPL35AP TMSB4XP1 MT-ND6 HSP90AA4P RPS3A RPS16P5 GSTP1P1 RPS8P3 KRT19P1 RPL19P1 RPL23A RPS20 S100A11 TPT1-AS1 RPLP0P2 KRT77 RPL18A MT-ATP8 RPS27AP1 RPS11P1 RPL31P1 RPS5P2 RPL41 RPL12L3 MGST2 RPL30P1 ANXA2 UCHL3 TXN2 RPL27A RPL34P1 RPS7P10 RPL37AP1 CAV2 MT-ND2 RPS6KA1 RPS24P1 RPLP2P1 TMSB10P1 MT-ND5 RPS15AP1 RPS14 EEF1A1P1 HSP90AB2P MT-ND3 FAUP1 GNB4 B2M KRT18P10 YWHAE RPL11P5 RPL8P2 IGFBP4 S100A9 RPS4XP1 MYL6B PTMAP2 SPIRE1 NCLN RPL5P1 UBBP1 NQO2 UBA52P3 TADA1 HINT1P1 MT-CO1 ALDOA TOMM70A MT-RNR2 RPS23P1 NEBL CFL1P1 SRSF2 RPL6P12 RPL15P1 PFN1P1 YBX1P1 SOX6 TAX1BP3 LDHBP1 RPS20P1 RPL26L1 RPL27AP NAP1L1P1.", "role": "user" }, { "content": "resistant", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a cell. Your task is to predict its response to the drug Erlotinib: [resistant, sensitive]. Make your choice in format 'Final Answer: resistant' or 'Final Answer: sensitive'.\n{gene_names}: MT-TD FTLP1 TMSB4XP1 MT-CYB FTH1P1 MT-CO3 RPL13A PABPC1L CAV2 TMSB10P1 RPS14P3 RPL37A MT-CO2 GSTP1P1 RPL23A MTA2 RPL13AP17 RPLP1P13 RPS24P1 MT-ND4L RPS8P3 TXN2 S100A11 RPS27AP1 PTMAP2 MALSU1 B2M RPL35AP RPS14 RPS3A RPS16P5 TPT1-AS1 RPLP0P2 GNB4 RPL11P5 RPL35A RPL30P1 RPS29 KRT18P10 LGALS3 UCHL3 KRT77 RPS23P1 YWHAE KRT19P1 GAPDHP1 HMGN2P10 RPS12P15 PPIAP1 HSP90AA4P TADA1 RPL19P1 SERGEF HSP90B2P NEBL ATP5E RPS4XP1 CCND3 RPS11P1 EEF1A1P1 ARPC1B DENND1A UBA52P3 RPL37AP1 NDUFS5P1 RPL5P1 RPS20 GNB1 RPL24P2 KRT80 PRDX2 NPM1P10 RPL15P1 RPL32P26 PSMB1 H3F3BP1 HSP90AB2P RPL12L3 NDUFA4P2 OAZ2 RPS21P4 RPL31P1 PRSS27 RPL30 KTN1-AS1 EIF1AD CALHM2 COX5BP6 UBE2A YBX1P1 NAP1L1P1 RPS20P1 RPL8P2 ATP5G3 NGLY1 SERBP1P1 HSPD1P1 UQCRHP2 NACA2 RPL14P1.", "role": "user" }, { "content": "resistant", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a cell. Your task is to predict its response to the drug Erlotinib: [resistant, sensitive]. Make your choice in format 'Final Answer: resistant' or 'Final Answer: sensitive'.\n{gene_names}: MT-TD MALSU1 RPLP1P13 TMSB10P1 MT-CO3 RPS4XP1 RPL27AP PABPC1L TXN2 RPS21P4 RPS20P1 RPL13A CCT6B MT-CO1 RPS12P15 MT-CYB UBA52P3 PRSS27 FTLP1 RPS23P1 PSME2P2 RPS24P1 TMSB4XP1 TAOK2 PTMAP2 CBX3P1 RPL37AP1 MT-ND6 MT-ATP8 PSAT1 EIF6 RPS20 IGFBP4 RPL26L1 GSTM4 RPLP2P1 ATIC XRRA1 TMC5 ANKRD12 RSL24D1 RPS8P3 MT-ND4L TAX1BP3 KDELR3 MYL12B RPS11P1 HSP90AA4P SCAF4 FGF19 MT-ND2 NQO2 TANC1 PES1 MYL6B SUMO2 GAPDHP1 RPL36AP10 KRT18P10 RPLP0P2 HIST1H4E RPL34P1 RPS27AP1 MT-CO2 MTATP6P2 RPL35A MTA2 LGALS3 CAV2 COL4A5 RPL6P12 RPL13AP17 SERGEF ARPC5 H3F3BP1 RPL30P1 MESP1 RPL24P2 HSP90B2P RPL18A EIF1AD RPS16P5 TRA2B AXL DLGAP1-AS2 RUVBL2 EID2B NEBL FAHD2A NDUFS5 PPP2R3B HTATIP2 SDAD1P1 RBM7 PFN1P1 CHMP4A RWDD2A SMIM19 OR2A1-AS1 RLIM.", "role": "user" }, { "content": "resistant", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a cell. Your task is to predict its response to the drug Erlotinib: [resistant, sensitive]. Make your choice in format 'Final Answer: resistant' or 'Final Answer: sensitive'.\n{gene_names}: MT-TD KRT17P3 HSP90AA4P CAV2 TMSB10P1 TMSB4XP1 KRT77 EPS15 TPM2 RPS12P15 DNAJC11 HIST1H4E CAPN7 ITGB1BP1 EIF1AD RPS8P3 RPL21P1 CCNJ MGST2 CALHM2 NHP2P1 RPS21P4 ATP1B1 MALSU1 TMC5 MT-CO2 LDHBP1 GSTP1P1 CCT5P1 ATP5I FTLP1 KRT80 S100A9 RPL37AP1 RPL37A MATN3 TBC1D10A PGPEP1 RP11-752G15.6 MIR1234 ZMYM1 CCT6B GMCL1P1 PHKA2 UTP14C COX10 WDYHV1 FTH1P1 HEXDC PSMD14 ANKIB1 CSTA H1FX EEF1DP1 UBE2V2 RPS15A RSL24D1 SUB1P1 TOP2B MRPL13 RPL18A MT-ND1 MAP1LC3A TBC1D1 AIF1L B3GNTL1 PSD3 TMPO GMCL1 ADCY7 TIAL1 PHRF1 ARPC3 C5ORF45 DICER1 COMMD7 MRPS6 SDHA SQRDL MT-CO1 FAUP1 MESP1 N4BP1 RRP7B BHLHE40 CCDC82 LGALS3 TCEB2P1 RELL1 RPS11P1 NDUFS7 SLC7A11-AS1 NAP1L1P1 TRAM2-AS1 NDUFA10 SCML2 RAC1P1 RPS4XP1 OAZ2 EIF4G3.", "role": "user" }, { "content": "resistant", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a cell. Your task is to predict its response to the drug Erlotinib: [resistant, sensitive]. Make your choice in format 'Final Answer: resistant' or 'Final Answer: sensitive'.\n{gene_names}: HSP90AA4P MT-TD RPLP1P13 MT-CO2 PABPC1L MALSU1 TMSB10P1 RPS27AP1 FTLP1 HSP90AB2P RPL13AP17 RPL38P3 GAPDHP1 RPS12P15 RPS14P3 NGLY1 GSTP1P1 RPL30P1 RPL13A RPL23A TXN2 RPL6P12 RPS3A MT-ND4L ITM2C RPS15AP1 SEC63 RPLP2P1 MT-CYB RPS6KA1 FTH1P1 FAUP1 KTN1-AS1 RPL35AP RPS21P4 RPS24P1 RPS7P10 RPL24P2 TPT1-AS1 SLC25A5-AS1 NAP1L1P1 RPL14P1 GNB1 RPL32P26 PRDX2 ATP5H IGFBP6 RPL19P1 RPS27A NPM1P10 RPL34P1 CD24P4 PTMAP2 ZMAT3 TMSB4XP1 PDLIM2 MT-ATP8 RPS11P1 RPL41 MT-CO3 COX7CP1 COX6CP1 RPS8P3 EIF3I RPS29P20 YWHAE LUCAT1 S100A11 SERGEF ATP6V0E1 ATP5E FBXO36 SMARCA2 NR1D1 BRF2 RPS14 BCKDK PSMB7P1 RPL21P1 COMMD7 ANP32B SNRPD2P1 CALHM2 RPL23AP12 RPL39L NDUFAF1 ATP6V1F GPX1P1 SNX1 METAP1 CAV2 NDUFB6 SUMO1 MT-ND1 MTA2 EIF1AD NDUFB2-AS1 PSME2 ANKRD11 RPL27A.", "role": "user" }, { "content": "resistant", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a cell. Your task is to predict its response to the drug Erlotinib: [resistant, sensitive]. Make your choice in format 'Final Answer: resistant' or 'Final Answer: sensitive'.\n{gene_names}: MALSU1 MT-TD PABPC1L FTLP1 TADA1 S100A9 FTH1P1 TXN2 RPS12P15 MT-CYB RPS16P5 RPS27AP1 RPS20 RPS14P3 RPL35AP RPL38P3 RPS15AP1 TMSB10P1 RPS5P2 RPL13AP17 RPSAP1 ATP5E RPLP1P13 NCLN EEF1A1P1 ANXA2 RPL8P2 RPL14P1 GAPDHP1 KTN1-AS1 SERPINB5 COX6CP1 HSPEP1 DSTNP4 RPL37A CAPN7 CSTA SERBP1P1 RPLP2P1 RPL36AL UBBP1 PFN1P1 TMEM259 SAP30 RPS27A RPS3A RAD51 RPL13A COX5BP6 GNB4 HNRNPA3 TMSB4XP1 CFL1P1 NDUFS7 RPS23P1 RPL36AP10 NOP14 MT-ND2 SRIP1 HSP90AB2P HIST1H4E MRPS14 VANGL2 EPS8L2 PPIH HIST1H2BE SPTBN2 RPL5P1 RECK RTN4IP1 ARHGAP21 RPL31P1 HNRNPKP1 CCDC82 RPS20P1 GCDH RPS8P3 CIR1P2 CSDE1 TALDO1 PPP1CB EIF4A3 RPL30 EIF3I RPL11P5 SLC26A4-AS1 MT-RNR2 CCNJ PTMAP2 TAX1BP3 LGALS7B RANBP1 RPS21P4 PPIC RHOC XRRA1 SRA1 RPL34P1 HINT1P1 NEFH.", "role": "user" }, { "content": "resistant", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a cell. Your task is to predict its response to the drug Erlotinib: [resistant, sensitive]. Make your choice in format 'Final Answer: resistant' or 'Final Answer: sensitive'.\n{gene_names}: RPL13AP17 FTH1P1 GAPDHP1 RPS14P3 TMSB4XP1 TMSB10P1 RPL13A RPS27AP1 PABPC1L RPS8P3 FTLP1 NCLN RPL34P1 RPS20 RPL38P3 TPM2 RPL35A RPL11P5 RPL30P1 S100A9 SYNE4 HNRNPCL1 RPL23A MYL4 RPL31P1 DEXI TCEB1P2 HNRNPA3P1 PGDP1 ETFB RPL6P12 BTF3 NCF4 USMG5P1 RSL24D1 HINT1P1 CAV2 PRR11 LL0XNC01-237H1.2 NOP14-AS1 TAGLN2 PAFAH1B2 ENO1-IT1 TCEA1P2 MT-TD SHFM1P1 RPS21P4 HDDC3 OGFOD1 FAM173B PTTG3P HPS4 CDC42EP4 GNB1 RPL37A MYLK SHANK1 LIN37 RPL5P1 PSMD3 RPS29 RAC1P1 TYRO3 DCAF13P3 SMCHD1 HSPB11 FDPSP1 TAOK2 PPIAP1 RPS5P2 SRIP1 UBXN10 IL37 NMNAT1 RRM2B PICK1 RPS4XP1 PSMB1 RPL35AP RPS14 TANC1 RBM4 ZNF594 PSMD12 RPLP1P13 UBE2F RPL39L TOMM70A MT-ATP8 GAK DDB2 WDFY2 TIMM50 FAM134C FAM174A MTERF NDUFB4P2 CLINT1 RPLP2P1 UQCRHP2.", "role": "user" }, { "content": "resistant", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a cell. Your task is to predict its response to the drug Erlotinib: [resistant, sensitive]. Make your choice in format 'Final Answer: resistant' or 'Final Answer: sensitive'.\n{gene_names}: MT-TD MALSU1 MT-CYB MT-CO2 MT-CO3 MT-ND4L MAP1LC3A NEBL MT-ND2 MT-ND3 GAPDHP1 MT-ND6 TPM2 KRT77 KRT17P3 GCDH ALDH1L1 FN3K KRT19P1 HNRNPA3P1 GSR SETD5-AS1 PMF1 DENND1A CYSTM1 RPLP2P1 RPS21P4 TMEM260 POLR2I MT-ATP8 MPHOSPH9 MT-ND4 UGDH CTTNBP2NL U91319.1 PSMD3 MT-ND1 PTPN18 RPS7P10 MT-CO1 PNKD ZCRB1 CCDC82 ADSL RPL14P1 CAP1 ZFP36L2 COX6A1P2 MAGI3 YKT6 INO80B QRICH1 SATB1 RPS8P3 NDNL2 ANKRD11 EFNA5 STEAP4 EDARADD MT-RNR1 FTSJ3 ERC2 CFH CHN1 LLPH IMP3 GINM1 RABGAP1L DIP2A RPS6KA1 ATP2C1 ZNF296 LRRC45 RFPL1S LOXL1-AS1 STAT3 SPG20 PSMA5 ADD1 KDM5B NCOR1 FDPSP1 RP11-465B22.3 ITSN1 CCDC142 SLC25A38 GSTM4 XPOT MOSPD3 HDLBP UAP1 C4ORF21 METRNL TMEM63B PM20D2 THOC3 AMMECR1L GANAB SDHA CIR1P2.", "role": "user" }, { "content": "resistant", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a cell. Your task is to predict its response to the drug Erlotinib: [resistant, sensitive]. Make your choice in format 'Final Answer: resistant' or 'Final Answer: sensitive'.\n{gene_names}: MT-TD MALSU1 FTH1P1 PABPC1L FTLP1 RPL13A MT-CO3 LGALS3 RPL35AP MT-ND6 MT-ND4L PCNPP1 KRT19P1 HSP90AA4P PDCD6IP GAPDHP1 GOLIM4 IGBP1P1 TXN2 RPS29P20 MT-ATP8 CAMK1D MT-CYB AHNAK NUDT16L1 TIMM8AP1 CHMP2A TXNDC11 GPX1P1 ZFAT RPLP0P2 SHFM1P1 ITFG2 HNRNPMP1 RPS11P1 GNB1 VPS36 NDUFA10 RPS24P1 GAS2L1 RPS6KA1 HSPA9P1 RPS20 PAK1IP1 SNRPD2P1 USMG5P1 ATP5H NCF4 ATG5 NPM1P10 SYNPO THOC1 EIF3LP1 TADA1 YAP1 SRSF6 RPL17P1 PUM2 MT-ND2 CLIP3 MT-ND3 TXNRD2 XKR6 SLC26A4-AS1 ZNF264 PPIAP1 RPL13P2 CMTM4 SRSF9P1 PPIC CD63 UQCRBP1 OSBPL9 SUPT20H TJP2 STK10 GULP1 CKAP2L CCDC153 RPS5P2 ZNHIT1P1 SH3BP1 CTNND1 HPD ULK2 N4BP3 VTI1BP1 KRT18P10 CHUK UXT H3F3BP1 NIPA1 GHDC LACTB2 TCF25 TPRA1 CCNJ MFGE8 ASAP1 GSTP1P1.", "role": "user" }, { "content": "resistant", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a cell. Your task is to predict its response to the drug Erlotinib: [resistant, sensitive]. Make your choice in format 'Final Answer: resistant' or 'Final Answer: sensitive'.\n{gene_names}: MALSU1 RPL13A MT-TD UBN2 RPL19P1 RPS8P3 RPL37AP1 FTLP1 MARCH7 TXN2 RPL37A ZCCHC14 SRGAP3 GSTP1P1 SNX1 AKAP9 FTH1P1 GAPDHP1 SLC2A12 ERCC8 MT-CO3 RPLP0P2 AMMECR1L SPC24 SUMO1 HMGN3-AS1 ANXA2 ARPC5 CNIH2 ARHGEF7 RPL10AP2 DERL1 RP4-635G19.1 TFDP2 CCNY GTF3C1 CLN8 UNC119 PRDM4 AP001258.4 RUNX2 SLC4A8 CARD10 MGMT SERAC1 TTPAL TIPARP-AS1 PISD DDX18 MT-ATP8 CA5BP1 KCTD1 HNRNPU-AS1 PQLC3 SPG21 DNAJA1P3 PITX1 IQCB1 TAB2 ERBB3 HNRNPA3 SNRPD2P1 PRDX6 HIC2 RPL6P12 ABI2 TXNRD2 RPL5P1 TNRC6C-AS1 POLR1B LINC01023 CALHM2 TRAPPC2P1 H2AFX PPP1R14B MRPL34 PREB MRPS7 INCA1 POMT1 GOLGB1 MRGBP RAB23 PLA2G7 IL10RB POLR2C AC016683.6 OSER1-AS1 VGLL3 TCEB1P2 HERC2P9 ERC1 BFAR RPL12L3 AFF4 TPRA1 ZDHHC8 GADD45B C17ORF76-AS1 RPL26L1.", "role": "user" }, { "content": "resistant", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a cell. Your task is to predict its response to the drug Erlotinib: [resistant, sensitive]. Make your choice in format 'Final Answer: resistant' or 'Final Answer: sensitive'.\n{gene_names}: FTLP1 PABPC1L RPS8P3 GAPDHP1 RPLP1P13 FTH1P1 RPL13A RPL35AP TXN2 RPL35A RPS27AP1 RPL23A RPS14P3 GNB4 PSMB1 TMSB10P1 RPL18A RPL37A EIF2S2P2 RPS23P1 RPL8P2 UBBP1 RPL30P1 GSTP1P1 RPL13AP17 TUBA1C RPS21P4 CALM2P1 RPS20 RPS4XP1 TPT1-AS1 LDHAL6A RPL11P5 RPS11P1 RPS3A TMSB4XP1 RPS15AP1 PTMAP2 RPL26L1 RPS15A RPS12P15 KRT77 RPL9P15 RPL27A TPM2 SETBP1 YBX1P1 ARPC2 FAUP1 RPLP0P2 SRIP1 SRP14-AS1 MGST2 RPL38P3 RPL12L3 PTTG1IP RPL23AP12 EIF1AD ZFAT RPL32P26 RPL19P1 RPL7AL2 LDHBP1 ANXA2 ATP5G3 DENND1A YWHAG NPM1P10 ACTB CAV2 DYNLL1-AS1 RPL37AP1 C17ORF76-AS1 NDUFS5P1 PEBP1P2 SRA1 KRT19P1 CCND3 FAM109A RPS14 RECK NAPRT1 RPL14P1 HNRNPA3 RPL41P1 RPL5P1 MT-TD RPS24P1 RPL24P2 PSD3 PRDX2 RPS6KA1 UBA52P3 RPL31P1 RPL15P1 MAGOH2 RPL6P12 EIF1AXP1 HSP90AB2P RPS29.", "role": "user" }, { "content": "resistant", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a cell. Your task is to predict its response to the drug Erlotinib: [resistant, sensitive]. Make your choice in format 'Final Answer: resistant' or 'Final Answer: sensitive'.\n{gene_names}: MALSU1 MT-TD PABPC1L MT-CYB FTH1P1 MT-CO3 FTLP1 RPLP1P13 RPS14P3 RPL37A RPL24P2 RPL13A TMSB4XP1 S100A11 RPS16P5 RPS27AP1 RPS12P15 RPS11P1 RPL13AP17 HSP90AA4P RPL23A RPL30P1 GSTP1P1 RPL31P1 EEF1A1P1 NAP1L1P1 MT-CO2 RPLP2P1 RPS24P1 CAV2 KRT19P1 RPS23P1 HSP90AB2P KRT77 MT-ATP8 RPS8P3 RPL35A RPL32P26 PLA2G4A NEBL RPS3A RPS20 RPS20P1 RPS15AP1 RPL19P1 GAPDHP1 GPRC5B RPS27A IGFBP4 ANXA2 RPL6P12 FAUP1 MT-ND4L KTN1-AS1 RPL12L3 RPS29P20 RPL21P1 RPL27A RPS5P2 UBA52P3 CFL1P1 PSMB1 RPL35AP ATP5J RALGAPA1 RPL18A RPS21P4 LDHBP1 S100A9 RPS7P10 RTFDC1 SLU7 TXN2 NDUFS5P1 TCEB2P1 RPL41 RPL38P3 RPL11P5 TPM2 GAK ATP5G3 PTTG3P YWHAE CCDC82 DBN1 MT-ND1 UCHL3 DYNC2H1 TAX1BP3 MYL4 CSTF1 PKMP1 NPM1P10 SPIRE1 TSPYL1 ATP5E RTN4IP1 S100A13 CALHM2 RPL29.", "role": "user" }, { "content": "resistant", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a cell. Your task is to predict its response to the drug Erlotinib: [resistant, sensitive]. Make your choice in format 'Final Answer: resistant' or 'Final Answer: sensitive'.\n{gene_names}: MT-CYB GSTP1P1 PTMAP2 MT-TD MT-CO3 RPS12P15 RPL15P1 UBXN10 RPL34P1 UBBP1 EDIL3 CAP1 TMSB4XP1 PTN CCNB1IP1 RPL13A MT-CO2 GTPBP6 KRT77 PABPC1L RPL27A NAF1 HSP90AA4P RPL5P1 S100A9 WDFY1 MCFD2P1 RPL11P5 ARPC1A STK10 RPS8P3 RPL35AP MGME1 PTK2B RANBP1 TMEM87B DCAKD SH3BP5-AS1 ANXA2 FIP1L1 AKAP9 ATRAID GPRC5C FAUP1 RPLP2P1 PNISR RPL37AP1 NSD1 RPL31P1 EPN2 RPLP0P2 RPS15AP5 KPNA4 COX5BP6 FAUP2 CEBPD PCYT2 PAIP2 ZNHIT1P1 KRT80 GNL3L MRRF ZNF248 RPS27AP1 SMCHD1 RPS15A PSMB7 NDUFA10 PSMB1 CAPZB GRPEL2 MAN1B1 HNRNPA3 EPB41L4B ASB8 SIPA1 MT-ND4L RECK NAP1L1 KIF17 DBF4B SLC44A2 TOMM70A DBN1 AKR1A1 RPS15AP1 RPL10AP2 PDCD6IP SLC25A40 USP15 CYCS TMEM107 IL34 PRDX2 RPL41P1 HSPD1P1 LDLRAP1 GOLPH3L CCT5P1 C17ORF89.", "role": "user" }, { "content": "resistant", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a cell. Your task is to predict its response to the drug Erlotinib: [resistant, sensitive]. Make your choice in format 'Final Answer: resistant' or 'Final Answer: sensitive'.\n{gene_names}: MT-TD PABPC1L MALSU1 TPT1-AS1 TPM2 SLC7A11-AS1 UBBP1 GOLGA5 HSP90B2P GTF3A MT-ND1 MT-ND4L EIF1AD MT-CO2 PTMAP2 NFATC2 TADA1 UBR2 SRSF2 HNRNPKP1 ZC3H7B GAPDHP1 ZBED6CL SRSF3 MT-ND6 KIF4B RPL7AL2 CCDC64B WDR4 PRKAA1 HSPA9P1 PRCC STK16 COA3 CLK3 RFXAP FUT1 TMSB4XP1 ZC3H14 DLK1 LSM5 USP37 ZFP64 STK40 MED24 SNRPD1 LYRM5 SNRNP25 F12 UBR7 MAU2 CDKN2AIP TUBA4B ZNF333 EIF2AK3 TNPO1 USP9X MTATP6P2 ZNF783 GLTSCR2 C6ORF99 MYO1C MT-ND5 CERKL USP8 EXOC8 COX4I1P1 GNB4 SOD1P3 GOLM1 MT-ND3 MRPS7 XRN2 DPH3 DHRSX HSPD1P1 PXN-AS1 ARHGAP19 BRAF RPS6KA1 ZFAT PDE5A FOXK2 DIP2C IGF2BP2 MCOLN1 S100A13 RP11-1191J2.5 OST4 EBPL SSR3 PRPF6 TG DGKE PTRH1 L3HYPDH SDHAF1 KRT17P3 MIR5094 RPL38P3.", "role": "user" }, { "content": "resistant", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a cell. Your task is to predict its response to the drug Erlotinib: [resistant, sensitive]. Make your choice in format 'Final Answer: resistant' or 'Final Answer: sensitive'.\n{gene_names}: MT-TD RPL35AP FTH1P1 FTLP1 PABPC1L MT-CO2 HMGB2P1 ATP5G3 RPL13A HSP90AA4P PLK3 RPLP0P2 TOP2B RPL8P2 CKAP2L CAV2 PCBD2 KIF24 MGST2 EEF1A1P1 ANXA2 GAPDHP1 HSP90AB2P AMMECR1 CASZ1 HSP90B2P CYCS CBFA2T2 YWHAH PPIH REV3L PSMD3 ICOSLG KRT19P1 SLC40A1 MKI67IP MTRNR2L10 NUDC NINJ1 CDC20P1 ATP5H SNRPBP1 ZC3H3 RAB1B LTBP4 GNB4 CHD3 RPS8P3 DBF4B CTC-232P5.4 UQCRFS1P1 URAHP MED11 SUB1P1 H1FX-AS1 DYNC1I2 SEC61A1 LARS2 KRT18P10 ANXA1 ZC3H12A MORF4L2-AS1 LETM2 MAGOH SMC5 RPL13AP6 RPS27AP1 WDR72 C8ORF76 ANP32A GADD45G KLK6 METTL2B ORC5 PSME1 PISD PTPN9 PEX13 GULP1 NCLN VPS33A ALDOA PLEKHM1P UTRN WHAMMP3 EIF3E EIF4A1 RALGAPA1 NEDD9 CCT4 RAP1AP RPL30P5 CAPNS2 GLP2R RAC1P1 NUS1 TMEM11 SMYD3 ATP5A1 RTN4IP1.", "role": "user" }, { "content": "resistant", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a cell. Your task is to predict its response to the drug Erlotinib: [resistant, sensitive]. Make your choice in format 'Final Answer: resistant' or 'Final Answer: sensitive'.\n{gene_names}: MT-TD MALSU1 PABPC1L HSP90AA4P MT-CO2 FTH1P1 GAPDHP1 MT-CYB RPS12P15 RPS8P3 CAV2 RPL13A RPLP1P13 RPS20 RPL35AP FAUP1 RPL5P1 RPS11P1 RPS14P3 TMSB4XP1 MT-ND4L FTLP1 RPL24P2 RPL37A HSP90AB2P RPS27AP1 UBA52P3 MT-CO3 RPS16P5 HSP90B2P RPL14P1 MYL6B RPL37AP1 RPS23P1 RPS24P1 EIF3EP1 DLG2 RPL39L RPSAP1 RUVBL2 SLIT2 MT-ATP8 RPS6KA1 RPL35A RPS15AP1 MT-ND6 RPL13AP17 PTMAP2 PSMB1 MRPL14 RPL26L1 DBN1 GLUD1 MRPL51P2 EIF6 RPL23A DHRS12 TOMM70A MED11 MT-CO1 TESK1 KRT80 BACE2 MPHOSPH9 MRPL22 RPS21P4 YWHAE LPP-AS2 RP11-305B6.1 NEBL GADD45B CHD5 RAD51 ARL5A RHOC HDGFRP3 MT-ND2 SMIM15 PREB ITGB4 RPS3A UBE2A RPL27A KTN1-AS1 LIMD1 MT-ND1 VN1R82P TCEB2P1 RPL12L3 MT-ND3 COX6CP1 MT-ND5 GSTP1P1 METAP1 PNKD KRT18P10 EEF1DP1 AKR1B1 SRA1 NDUFA11.", "role": "user" }, { "content": "resistant", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a cell. Your task is to predict its response to the drug Erlotinib: [resistant, sensitive]. Make your choice in format 'Final Answer: resistant' or 'Final Answer: sensitive'.\n{gene_names}: MT-TD FTLP1 TMSB4XP1 MALSU1 RPLP1P13 MT-CO2 FTH1P1 MT-CO3 GAPDHP1 RPS20 MT-CYB RPL37A MT-ATP8 RPL35AP RPS12P15 PABPC1L KRT77 MT-ND4L S100A11 RPL35A ANXA2 S100A9 RPS14P3 KRT18P10 RPL13AP17 RPS24P1 TMSB10P1 CAV2 RPS16P5 RPL13A TXN2 RPL11P5 TPT1-AS1 RPS8P3 MT-ND1 RPL27A HSP90AA4P RPL30P1 MYL6B RPS21P4 NCLN MT-ND6 UCHL3 RPS27AP1 RPS3A RPS20P1 RPL23A KRT17P3 PSMB1 ATP5E MT-RNR2 RPS11P1 RPL24P2 GSTP1P1 RPL32P26 MT-ND3 CFL1P1 RPS5P2 HSP90AB2P RPL18A TPM4P1 RPL31P1 DENND1A RPL19P1 RPLP0P2 SNRPD2P1 CHCHD2P1 RPL8P2 RPL6P12 RPL5P1 TUBA1C COX6B1P1 RPL30 RPLP2P1 PTMAP2 YWHAE ACTB RPSAP1 LDHBP1 RPL12L3 MGST2 RPS15AP1 SPIRE1 DSTNP4 RPS6KA1 RPS4XP1 RPS14 RPL10AP2 EEF1A1P1 RPL27AP HIST1H4E RPL34P1 TPM2 NAT1 RPL38P3 RPS23P1 PALM2 KRT19P1 NDUFS5P1 ACTN1.", "role": "user" }, { "content": "resistant", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a cell. Your task is to predict its response to the drug Erlotinib: [resistant, sensitive]. Make your choice in format 'Final Answer: resistant' or 'Final Answer: sensitive'.\n{gene_names}: MT-TD FTLP1 FTH1P1 RPLP1P13 TMSB4XP1 MT-CYB MT-CO3 GAPDHP1 RPL13A RPS11P1 GSTP1P1 RPS16P5 MT-ND4L RPS3A ANXA2 RPS12P15 RPS27AP1 HSP90AB2P TMSB10P1 TXN2 MALSU1 RPL24P2 PABPC1L MT-CO2 RPS20 KRT77 RPS6KA1 CAV2 RPS14P3 TUBA1C RPL35AP MT-ND1 RPL32P26 RPL18A S100A11 RPS4XP1 FAUP1 RPS5P2 RPL11P5 RPL30P1 PTMAP2 ACTB GNB4 RPL19P1 CHCHD2P1 RPL31P1 HIST1H4E RPS21P4 TPT1-AS1 MT-ND3 PPIAP1 PRDX2 RPL30 EEF1A1P1 RPL13AP17 RPLP0P2 DENND1A RPS23P1 RPL8P2 HNRNPA3 RPS24P1 RPL23A MT-ATP8 UCHL3 ENO1-IT1 RPS7P10 RPS14 CALM2P1 MT-ND6 RPS15AP1 KRT18P10 MYL6B RPL35A MGST2 CCT6B RPLP2P1 H2AFZP1 RPL27A ATP5E MT-ND4 PARL SLC25A5-AS1 EIF1AD RPL12L3 OAZ2 SPIRE1 MT-ND2 RPL37AP1 PSMB1 ATP5G3 SLC40A1 NQO2 RPS8P3 CALHM2 RPL38P3 NCLN UBA52P3 NUDC UBBP1 SEC62.", "role": "user" }, { "content": "resistant", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a cell. Your task is to predict its response to the drug Erlotinib: [resistant, sensitive]. Make your choice in format 'Final Answer: resistant' or 'Final Answer: sensitive'.\n{gene_names}: MT-TD MALSU1 FTLP1 KRT77 MT-ND4L MT-CO2 FTH1P1 RPL13A MT-CYB PABPC1L RPLP1P13 MT-ND6 MT-ND1 RPS12P15 RPL35AP MT-CO3 MT-ATP8 GAPDHP1 RPS8P3 GSTP1P1 RPL11P5 ANXA2 RPLP0P2 RPL32P26 TMSB4XP1 RPS14P3 RPL26L1 MT-ND2 RPL30P1 S100A9 CAV2 RPS16P5 RPL35A RPS11P1 RPS27AP1 B2M MT-ND3 RPL13AP17 RPL37A FAUP1 RPL24P2 RPS6KA1 YWHAE RPS3A RPS24P1 TMSB10P1 LGALS3 RPS4XP1 YBX1P1 RPL8P2 HSP90AB2P CALM2P1 UCHL3 EEF1A1P1 RPL31P1 GNB4 RPL19P1 COX4I1P1 QRICH1 RPL5P1 RPL41P1 S100A11 RPS15AP1 TXN2 RPL10AP2 CALHM2 RPS20 SOX6 RPL18A RPL23A RPS14 KTN1-AS1 MYL6B KRT19P1 RPS29P20 PTMAP2 CFL1P1 RPS21P4 MT-CO1 RPL14P1 ENO1-IT1 PFN1P1 RPS5P2 MT-ND4 NDUFS5P1 RPLP2P1 MGST2 RPL27A UBBP1 RPL30 ATP5E HNRNPA3P1 SERPINE2 DSTNP4 COX5BP6 RPL6P12 RPL15P1 PPP1R8 HDAC3 KIF7.", "role": "user" }, { "content": "resistant", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a cell. Your task is to predict its response to the drug Erlotinib: [resistant, sensitive]. Make your choice in format 'Final Answer: resistant' or 'Final Answer: sensitive'.\n{gene_names}: MT-TD MALSU1 FTLP1 MT-CYB FTH1P1 RPLP1P13 KRT77 TMSB4XP1 GSTP1P1 RPS14P3 KRT18P10 CAV2 MT-CO3 GAPDHP1 RPS27AP1 MT-CO2 TMSB10P1 RPS16P5 NEBL FAUP1 MT-ND4L RPS12P15 RPL13A RPL37A S100A11 RPS20 MT-ATP8 KRT80 ANXA2 HSP90AB2P MT-ND4 RPS8P3 RPL11P5 KRT19P1 PABPC1L IGFBP4 RPL8P2 RPS11P1 RPL13AP17 NDUFA4P2 RPL24P2 RPS21P4 TXN2 MT-ND2 B2M RPS24P1 RPL18A CPA4 GPRC5B UCHL3 MT-ND1 RPL30 MYL6B RPS5P2 RTN4IP1 UBA52P3 SNRPD2P1 GADD45B MT-ND6 RPL35A CFL1P1 MT-RNR2 RPL23A PSMA5 RPS20P1 TPM2 YBX1P1 MYL4 LDHBP1 NDUFS5P1 GSTM4 URAHP CALHM2 NCLN PPIAP1 RPL19P1 CCDC82 TPT1-AS1 KRT17P3 RPL37AP1 RPL12L3 COX7CP1 RPL10AP2 PSMB1 PRDX2 RPS6KA1 CYSTM1 RPL38P3 RPL27A COX5BP6 CCND3 EEF1DP1 YWHAE RPS14 RPS3A RPL5P1 TAX1BP3 PSAT1 PREB COX6CP1.", "role": "user" }, { "content": "resistant", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a cell. Your task is to predict its response to the drug Erlotinib: [resistant, sensitive]. Make your choice in format 'Final Answer: resistant' or 'Final Answer: sensitive'.\n{gene_names}: MT-TD FTH1P1 RPS14P3 GSTP1P1 PABPC1L RPS8P3 FTLP1 RPL35A MT-CO2 TMSB4XP1 RPL30P1 RPL37A RPLP1P13 RPS12P15 RPL24P2 GAPDHP1 RPS27AP1 MALSU1 TXN2 RPL35AP RPS24P1 RPL15P1 MT-CYB TPT1-AS1 RPL34P1 RPL13AP17 RPL13A RPS11P1 HSP90AB2P RPS20 CAV2 RPS21P4 PTMAP2 ANXA2 RPL19P1 PRDX2 RPL30 RPL11P5 RPS6KA1 UCHL3 MT-ND4L TMSB10P1 NQO2 GNB4 COX6B1P1 RPS20P1 RPL38P3 HSP90AA4P RPS5P2 RPS16P5 RPS23P1 COX7CP1 FAUP1 HNRNPU-AS1 SERBP1P1 RPLP0P2 RPL37AP1 MT-ND1 EIF2S2P2 RPL12L3 ATP5E RBM26 ACTB S100A9 NACA2 RPLP2P1 RPL31P1 PTRH1 RPL21P1 MGST2 RPL8P2 DENND1A EIF1AD KRT19P1 PSMB7 PPP1CB NUDC RPL23A MT-CO3 EEF1A1P1 COX6CP1 INHBB MYL4 EIF6 COX5BP6 S100A11 YBX1P1 MAP1LC3A RPS3A SEPT7P2 ENO1-IT1 RPL6P12 RAC1P1 CPA4 RPS4XP1 RPL26L1 PPIAP1 TMEM259 DBN1 MT-ND2.", "role": "user" }, { "content": "resistant", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a cell. Your task is to predict its response to the drug Erlotinib: [resistant, sensitive]. Make your choice in format 'Final Answer: resistant' or 'Final Answer: sensitive'.\n{gene_names}: MT-TD FTH1P1 FTLP1 MT-CYB MALSU1 MT-CO2 RPLP1P13 TXN2 RPL13A MT-CO3 GAPDHP1 RPL30P1 PABPC1L PRDX2 RPS8P3 RPL37A TMSB4XP1 KRT18P10 RPL13AP17 TPT1-AS1 RPS12P15 KRT77 TADA1 S100A11 RPS14P3 MT-ATP8 RPS27AP1 S100A9 TPM2 RPL24P2 RPS24P1 GSTP1P1 CAV2 RPS16P5 EEF1A1P1 RPL27A RPL32P26 RPL35AP RPS6KA1 MT-ND4L RPL23A RPL35A NPM1P10 RPL8P2 MT-ND1 PTGR2 MYL6B RPL37AP1 IGFBP4 UCHL3 RPL18A RPS11P1 NACA2 MT-ND6 RPL12L3 TMSB10P1 RPL30 RPL11P5 RPL31P1 YBX1P1 TMPO RPLP0P2 ATP5E RPS29 B2M RPS20 CCT6B SNRPD2P1 MT-CO1 RPS15AP1 PTMAP2 RPL41 HSP90AB2P ALDOA FA2H LSMEM1 NDUFA4P2 TANC1 RPL34P1 RPL23AP12 TCEB2P1 KRT17P3 RPL5P1 UQCRHP2 RPS4XP1 HSP90AA4P KRT14 FAUP1 GCN1L1 KRT19P1 HSPEP1 PRSS27 UBBP1 TAX1BP3 SPIRE1 UBE2A RPS3A RPS20P1 NDUFS5P1 EIF1AD.", "role": "user" }, { "content": "resistant", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a cell. Your task is to predict its response to the drug Erlotinib: [resistant, sensitive]. Make your choice in format 'Final Answer: resistant' or 'Final Answer: sensitive'.\n{gene_names}: MT-TD MT-CYB GAPDHP1 FTH1P1 FTLP1 TMSB4XP1 MT-ND6 RPL35AP RPS14P3 MT-CO2 MT-ND4L MALSU1 PABPC1L RPLP1P13 RPS3A GSTP1P1 B2M MT-CO3 RPS23P1 RPS8P3 RPL13A RPL37A RPL19P1 KRT19P1 UCHL3 CAV2 RPL23A MT-ATP8 RPS24P1 MT-ND3 RPS20 RPS15AP1 GNB4 MT-ND1 RPL38P3 TPT1-AS1 RPL11P5 KRT18P10 RPS6KA1 RPL13AP17 RPS12P15 QRICH1 KRT77 ANXA2 COX5BP6 RPL6P12 RPLP2P1 S100A9 RPS20P1 CALM2P1 PRDX2 SPIRE1 IGFBP7-AS1 EEF1A1P1 S100A11 RPLP0P2 HSP90AB2P RPL24P2 RPL14P1 MT-RNR2 ATP5G3 TXN2 KRT80 RPS27AP1 RPL21P1 CCND3 RPS16P5 RPS11P1 COX7CP1 HSP90B2P MT-ND2 LDHBP1 YBX1P1 RPL8P2 NDUFS1 RPL30 FAUP1 H3F3BP1 RPL27A SKP1P1 TPM2 NPM1P10 PSMB7 SLC25A5-AS1 MT-CO1 RPS4XP1 RPL5P1 HTATSF1P2 BTF3 RPL12L3 RPS14 DSTNP4 TMC5 ACTN4 MT-ND4 RHOC LGALS3BP SPPL2A KTN1-AS1 BTG1.", "role": "user" }, { "content": "resistant", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a cell. Your task is to predict its response to the drug Erlotinib: [resistant, sensitive]. Make your choice in format 'Final Answer: resistant' or 'Final Answer: sensitive'.\n{gene_names}: MT-TD MALSU1 MT-CYB CALHM2 FTLP1 SERPINE2 PABPC1L RBM4 TPM2 TMSB4XP1 EIF3C CYSTM1 RPLP1P13 NCOR1 DSTNP4 RPL30 RPS3A PPIC RPL13AP17 RPLP0P2 RPLP2P1 PTPRG-AS1 SMTN CTPS2 NUDC TRMT112P2 CAP1 MT-CO2 RPS11P1 THBS3 MT-ATP8 SPECC1L HSP90AB2P TARS2 MT-ND1 EGLN1 INVS GSTM2 FLNB-AS1 PRDX2 TINCR RPS6KL1 MAP4K2 PNKD EIF3H VPS9D1 ARFGAP1 APLP2 UQCC2 PTPRB U91319.1 GMPS RPS21P4 TP53TG1 RPL13A SNX5 KAT6B ZNF714 FAM122C TMEM14D RPS4XP1 PHTF2 IMP3 RPL8P2 PSAT1 MT-CO3 SLC40A1 TOMM22 YBX1P10 UQCRHP2 TRNP1 KLHL3 ZNF195 AUP1 SPAST NIPA2 SNRNP25 B2M RP3-337H4.9 CARKD SKIV2L2 EPB41L2 RTN4IP1 RFC1 RP11-195F19.5 RP13-461N9.2 UBE2D3 IDE ATP5B TMEM243 PLOD3 TADA1 AP2A1 MRPS30 RPS27AP1 NPEPL1 ARID4B GNA12 RPL38P3 CTSS.", "role": "user" }, { "content": "resistant", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a cell. Your task is to predict its response to the drug Erlotinib: [resistant, sensitive]. Make your choice in format 'Final Answer: resistant' or 'Final Answer: sensitive'.\n{gene_names}: MALSU1 MT-TD FTH1P1 FTLP1 GAPDHP1 RPL13A RPL37A RPLP1P13 PABPC1L RPS14P3 TMSB4XP1 RPL35AP MT-CYB MT-CO2 GSTP1P1 MT-CO3 RPS27AP1 KRT77 ANXA2 RPL35A RPS3A RPL13AP17 RPS8P3 RPS12P15 KRT18P10 S100A11 TXN2 MT-ND4L RPS16P5 RPS20 KRT19P1 KRT80 CCND3 RPL30P1 RPL23A RPS24P1 RPS14 RPL11P5 RPS23P1 PSMB1 TMSB10P1 HSP90AB2P RPL18A RPS21P4 MYL6B KTN1-AS1 RPS6KA1 RPL27A GNB4 NAP1L1P1 RPL31P1 PTMAP2 COX7CP1 RPL34P1 RPLP0P2 RPL8P2 RPLP2P1 RPS4XP1 RPL12L3 MT-ND1 RPS15AP1 PRDX2 YWHAE CAV2 RPL27AP HINT1P1 HNRNPA3 HSP90AA4P MT-ATP8 RPS20P1 ATP5E RPS29P20 FAUP1 RPS5P2 PFN1P1 RPS29 S100A9 NDUFB2-AS1 NDUFA4P2 RPL30 RPS7P10 RPL21P1 ALDOA EIF6 SEPT7P2 RPL24P2 PPIAP1 RPL32P26 HSPEP1 UBA52P3 RPL7AL2 RPL19P1 RPL14P1 RPL6P12 LDHBP1 UCHL3 SNRPD2P1 RPS11P1 RPS15A ARPC3.", "role": "user" }, { "content": "resistant", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a cell. Your task is to predict its response to the drug Erlotinib: [resistant, sensitive]. Make your choice in format 'Final Answer: resistant' or 'Final Answer: sensitive'.\n{gene_names}: MALSU1 MT-TD MT-CO3 MT-CYB MT-ND4L MT-CO2 MT-ND2 CALHM2 POLA1 TOMM70A CSE1L GPX7 DDX23 RPL23A TAF2 TPM2 RPL11P5 GOLIM4 RBM26 NEBL SDCCAG8 VMAC PLA2G10 SIVA1 SP100 MTRNR2L10 RPL35AP PCGF5 TNS4 SRRM5 CCND1 MTERF SRSF5 PHLDB3 SRSF2 RP4-555D20.4 HSD17B7P2 ATG9B TMEM53 EPG5 MT-ND1 RPS23P1 SERINC3 RP11-496D1.2 NCAPD2 LRRFIP1P1 CBFB FTLP1 ZNF639 CTD-2005H7.1 TAX1BP3 CHD1 THEM4 ABCE1 GATA3 NBPF16 NAPSA AFF4 ELOF1 C15ORF52 MYO7B RNU6-1053P DUSP16 NAP1L1P1 RUNX2 PCNXL4 KRT17 GRAMD1B ATXN2 FLJ27365 RPS4XP1 EPSTI1 IAH1 TMPO-AS1 PSMC5 DDB1 FAM229A RPS11P1 DYNLT1 RPL37P25 TRIM58 RPL31P1 C12ORF43 KCNMA1 SIAE SCYL2 MT-ATP8 DSTN RP11-288E14.2 CYB5D2 MITD1 AASS STX16 PSEN2 KRT18P10 PIAS1 FOXM1 RAD51 GNB4 NOL3.", "role": "user" }, { "content": "resistant", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a cell. Your task is to predict its response to the drug Erlotinib: [resistant, sensitive]. Make your choice in format 'Final Answer: resistant' or 'Final Answer: sensitive'.\n{gene_names}: MT-TD MALSU1 RPL13A FTH1P1 TMSB10P1 KRT77 NEBL GAPDHP1 FTLP1 RPS14P3 KTN1-AS1 TMSB4XP1 RPL35AP CCND3 TPM2 PTMAP2 HNRNPMP1 RPS24P1 PRDX2 RPLP1P13 RPL18A RPS21P4 LGALS3 DENND1A MT-CYB PRPF8 RPS16P5 ANXA2 TXNRD2 CFL1P1 RPL13AP17 RPS12P15 MT-ND4L SERGEF RPL30P1 UBA52P3 TESK1 SERBP1P1 TPT1-AS1 RPS20 HNRNPA3 COX5BP6 MYL6B ANKRD11 EEF1DP1 UBXN10 IGFBP7-AS1 HIST1H4E HSP90AA4P RPS7P10 RPS27AP1 SERPINE2 RPLP0P2 CCDC82 COX4I1P1 TXN2 MT-CO2 KRT19P1 CITED4 RPL38P3 RPS3A RPL27A NQO2 GSTP1P1 PC HNRNPCL1 RPL37AP1 RPL5P1 RPL23A TRMT112P2 RPL11P5 INHBB HDAC3 COPE RPL30 MYL4 MXI1 ATOX1 RPL34P1 GSTO1 DNAJC21 ARF1 FXR2 MT-ND6 RP11-485M7.1 HTATSF1P2 RPL31P1 PPIAP1 TSTD2 RPL12L3 LIN37 LONRF1 METTL9 NCBP2-AS2 XRRA1 SFR1 RPL9P15 CHD5 PTGR2 UBN1.", "role": "user" }, { "content": "resistant", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a cell. Your task is to predict its response to the drug Erlotinib: [resistant, sensitive]. Make your choice in format 'Final Answer: resistant' or 'Final Answer: sensitive'.\n{gene_names}: MALSU1 MT-TD MT-CYB MT-CO2 MT-CO3 MT-ND4L MT-ND1 MT-ND2 MT-ATP8 MT-ND4 HSP90AA4P GAPDHP1 PNO1 HDX MT-RNR2 MT-CO1 MT-ND6 ZNF426 ANKRD17 TPM2 FSD1L DCAF6 RP11-502I4.3 MT-ND3 PAX6 TAX1BP3 RP11-488L18.1 FIP1L1 SRSF2 CDH1 ZBTB11-AS1 GNL3L PHLDB3 THOC3 PTGES3P1 RREB1 CALHM2 C5ORF54 GCDH DHX30 TRA2B MT-ND5 MPHOSPH9 TRAF2 KPNA3 NDUFA12 RP11-789C17.1 RICTOR RBM4 RTN4IP1 ZFAT ST3GAL2 LDLRAP1 RP11-480I12.2 RRN3 RGMB RANGAP1 MICALCL RNF7 SERINC5 ANKRD10 EIF1AX PPP1R14B RIC8B SRBD1 MKI67IP CDK8 TRIM45 ZFAND2A CIB2 RPLP0P2 RANBP1 TMEM101 ANGEL1 AC079807.1 NUMB DTWD1 MGEA5 COX10 UBL5 COX20 TRIP12 MLK4 SPEN HNRNPMP1 UCHL3 ALG13 CYC1 DSTN ANKRA2 AKAP17A SMIM8 YKT6 ARID1B FA2H RPL38P3 NPM1P10 PRMT3 UBE2Q2P1 POLR2I.", "role": "user" }, { "content": "resistant", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a cell. Your task is to predict its response to the drug Erlotinib: [resistant, sensitive]. Make your choice in format 'Final Answer: resistant' or 'Final Answer: sensitive'.\n{gene_names}: MT-TD HSP90AA4P MT-CYB FTLP1 RPS27AP1 RPL13A RPL37A S100A11 TPT1-AS1 TXN2 GSTP1P1 MT-CO2 RPL8P2 MT-ATP8 MT-ND2 RPL23A MT-CO3 ZNHIT1P1 TOMM70A TMSB4XP1 FTH1P1 RPLP1P13 ANXA2 LSM6 NQO2 RPS16P5 SEC61G RPS24P1 RPS23P1 MT-ND1 RPL15P1 RPL18A GAS6 HMGN2P10 GNB4 RPL19P1 MALSU1 RPL30 KRT77 TMSB10P1 RPL30P1 RPLP2P1 RPS8P3 RAB32 C11ORF73 RPL13P2 TAX1BP3 YWHAG EOGT PRDX2 RPL5P1 EEF1A1P1 RPL34P1 NGLY1 SNRPD2 NCF4 RPS3A RPL27A KLK7 HNRNPA3P1 ZNF329 ENC1 HMGN1P35 UBN1 HSPEP1 TUBA4B RPL11P5 S100A13 DPM3 ATPIF1 RPL38P3 MT-RNR2 RPS12P15 SHFM1P1 HSP90AB2P S100A9 MT-ND4 COX7A2P1 DCAF13P3 ATP5E TUBG2 RPL41 ROPN1L RPS3AP1 PTMAP2 EIF6 RPS15AP1 RCN1P2 NDUFB4P2 FFAR4 NDUFS7 TFAMP1 BTF3 RPL12L3 TADA1 RPS20 SERGEF RPS11P1 FITM2 H2AFX.", "role": "user" }, { "content": "resistant", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a cell. Your task is to predict its response to the drug Erlotinib: [resistant, sensitive]. Make your choice in format 'Final Answer: resistant' or 'Final Answer: sensitive'.\n{gene_names}: MT-TD MALSU1 MT-CYB FTLP1 HSP90AA4P MT-CO2 MT-ATP8 GAPDHP1 RPS8P3 PABPC1L MT-CO3 KTN1-AS1 RPL37A RPS14P3 RPL18A RPL35AP S100A13 RPL12L3 RPL24P2 TMSB10P1 RPL8P2 KRT77 RPLP1P13 PTMAP2 MT-ND4L FTH1P1 RPS24P1 TXN2 RPS11P1 RPL30P1 KRT19P1 RPL11P5 RPL32P26 GSTP1P1 RPL19P1 RPL34P1 MYL6B RPS27AP1 RBM4 PRDX2 TPM2 CAV2 RPL15P1 NAMPTL RPL31P1 RPL37AP1 RPL35A RPL13AP17 MGST2 RPS16P5 RECK RPS4XP1 PSMB7 MT-ND6 MYL4 MT-ND3 TPD52L2 RPS15A CCDC82 PDIA4 RPL22L1 RPS15AP1 HSP90AB2P MT-ND1 RPL14P1 S100A11 TPT1-AS1 PLA2G4A RPS3A EEF1A1P1 ARPC5 RPL7AL2 EIF6 RPS23P1 NQO2 RPS6KA1 KRT18P10 NUDC PFKFB2 NDUFA10 RPS21P4 SERGEF ANXA2 RPS12P15 DSTN UCHL3 SEC14L1 HNRNPKP1 ANKRD12 MT-RNR1 MT-ND2 ARPC2 QRICH1 TMSB4XP1 PDLIM2 RPS20 DHX37 RPL26L1 RPL6P12 NDUFS5P1.", "role": "user" }, { "content": "resistant", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a cell. Your task is to predict its response to the drug Erlotinib: [resistant, sensitive]. Make your choice in format 'Final Answer: resistant' or 'Final Answer: sensitive'.\n{gene_names}: MALSU1 MT-TD MT-CYB MT-ND4L MT-CO2 MT-ATP8 MT-CO3 FTLP1 RPS24P1 HSP90AA4P FTH1P1 RPL5P1 RPL7AL2 DIP2A IGFBP4 CCDC82 RPL41 MT-ND6 MAU2 MAPKAPK3 RPS16P5 TMSB4XP1 RPLP2P1 TXNRD2 DDX49 SRSF2 RPS3A TADA1 MT-ND2 NIPSNAP1 C5ORF45 RPS6KA1 RPS12P15 RPL27A UBA52P3 RPL13A CSE1L GAPDHP1 NDUFV2 NFE2L3 CHD5 NAP1L1P1 S100A9 PARP1 TOE1 TXN2 HDAC3 RPL23A DHDDS BAIAP2 DHX30 RAC1P1 PSMG3 SLC16A4 IKBIP MICU1 HNRNPU-AS1 SPTBN2 SFR1 RHOB PRPF6 MACC1 THBS3 MT-RNR2 PSMD12 TPM4P1 GRAMD3 RTN3P1 INSIG2 IGFBP6 CD46 CDADC1 PDIK1L TIMP4 S100A11 CHCHD10 KRT18P10 AKAP9 PHF19 RHOC LPCAT4 PSAT1 ANKRD11 TMC5 CHMP2B H2AFX SLC25A5-AS1 SERPINF2 BSG BBX LPAR1 CTSC SLC41A2 RP11-349K21.1 KRT80 ARL14EP RPL11P5 MTRF1 DUTP6 CAP1P2.", "role": "user" }, { "content": "resistant", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a cell. Your task is to predict its response to the drug Erlotinib: [resistant, sensitive]. Make your choice in format 'Final Answer: resistant' or 'Final Answer: sensitive'.\n{gene_names}: MALSU1 FTLP1 MT-CO2 RPS16P5 MT-TD RPL35AP PABPC1L TMSB10P1 RPL13A RPL21P1 RPLP1P13 S100A9 RPS11P1 RPS20 HSP90AA4P RPS8P3 S100A11 RPS14P3 MT-CO3 RPS27AP1 FTH1P1 UCHL3 UQCRBP1 GSTP1P1 RPS12P15 RPL37A RPL13AP17 RPL14P1 GAPDHP1 TXN2 RPL11P5 RPS15AP1 RPS24P1 MT-CYB TMSB4XP1 YWHAE RPL37AP1 FAUP1 RPS5P2 RPS23P1 FIP1L1 MAP1LC3A RPL19P1 MT-ATP8 RPS15A TPT1-AS1 OCRL RPL34P1 MT-ND6 KRT17P3 GNB1 PSMB1 RPL6P12 RPS20P1 MT-ND4L EGR1 RPS29 RPL27A RPS21P4 SHFM1P1 RPL24P2 INHBB YBX3P1 RPL5P1 RHOC CCNJ RPL30P1 NAP1L1P1 GOLIM4 RTN4IP1 COX4I1P1 RPL12L3 GNB4 DENND1A RPLP2P1 LSMD1 SERGEF COX7A2L RPS3A COX5BP6 EEF1A1P1 EIF1AD RPLP0P2 ANXA5 PTMAP2 CD68 PALM2 TPM2 STX10 COX7CP1 PSMA3P NDUFS5P1 BZW2 EIF3E CALHM2 NOP58 TOMM70A H3F3BP1 PRDX2 LDHBP1.", "role": "user" }, { "content": "resistant", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a cell. Your task is to predict its response to the drug Erlotinib: [resistant, sensitive]. Make your choice in format 'Final Answer: resistant' or 'Final Answer: sensitive'.\n{gene_names}: MT-TD MALSU1 FTH1P1 RPS12P15 RPL37A TMSB4XP1 CAV2 MT-CO3 RPL37AP1 RPL13AP17 MT-CO2 FTLP1 NAP1L1P1 RPL24P2 KTN1-AS1 MT-CYB KRT19P1 RPL15P1 GSTP1P1 RPL13A RPLP0P2 HSP90B2P PABPC1L RPS11P1 HSP90AB2P RPS21P4 ANXA2 EEF1A1P1 RPL31P1 RPS16P5 MT-ND4L IGFBP4 RPS3A RPS27AP1 MT-ND3 RPL6P12 TPM2 RPLP1P13 HINT1P1 RPL23A RPL32P26 DSTNP4 MT-CO1 RPS8P3 RPL5P1 MT-ND2 KRT77 ACTB TXN2 CBFA2T2 RPS29 CCND3 RPL41 RPL35AP RPS20 TADA1 S100A9 LAMB2 RPS24P1 SRA1 GSTM2 RPL38P3 TMSB10P1 PTMAP2 DENND1A GNB4 GAPDHP1 RPL8P2 MYL4 RPL35A ATP5E RPS14P3 CUL5 RPS20P1 SERGEF MT-ATP8 MT-RNR1 S100A2 RHOC SNRPD2P1 RPS23P1 UBE2A FIP1L1 NDUFS5P1 CALHM2 CFL1P1 RAC1P1 H3F3BP1 EIF2S2P2 UCHL3 RPL27A ALDH1A3 CLIC4 RPL29P19 TCEB2P1 MYL6B S100A11 RPL12L3 PRDX2 SLC40A1.", "role": "user" }, { "content": "resistant", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a cell. Your task is to predict its response to the drug Erlotinib: [resistant, sensitive]. Make your choice in format 'Final Answer: resistant' or 'Final Answer: sensitive'.\n{gene_names}: PABPC1L RPL24P2 H2AFZP1 YBX1P1 PTMAP2 HSP90AA4P TMSB4XP1 NPM1P10 RPL31P1 CEP57L1 RPL38P3 FTH1P1 TPM3P1 APIP RPL27A NUDC GAPDHP1 CFL1P1 DUTP6 DUOX1 GLOD4 FAM133B ANP32B WIZ COX6B1P1 RPS14 SRRM1P3 GSTP1P1 RPL21P1 UTP3 RPL32P26 ZNF507 CTBP2P4 RAD21-AS1 LZTFL1 VPS9D1 PCBP1-AS1 GSTM2 FMN1 ATPIF1 TCEB2P1 NNT ETFDH CCDC58P3 LRRFIP1P1 MRPS16P1 CTSA RARS2 HOGA1 NOL8 RPL23A CHMP4A LINC00501 NF2 DYNC2H1 C14ORF2 CMBL KRT18P10 UQCRHP2 TRAPPC1 NUBP1 NCOR2 INO80 EIF4G3 SLC26A10 PSMD3 ARHGAP32 RPLP0P2 RPS8P3 FXR2 STRA6 SIVA1 PARP12 MALSU1 MCC FAUP1 FAM174A POLE4 MYL12B GPBP1L1 RPS12P15 HNRNPCL1 SLPI TRA2A MT-CO2 DDX49 RPL36AP10 RPL15P1 MOCS3 ANXA7 KLF6 CPNE2 RPL5P1 ALKBH2 CXORF23 CDC14A STAMBPL1 UBL5 FKBP4 AGO4.", "role": "user" }, { "content": "resistant", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a cell. Your task is to predict its response to the drug Erlotinib: [resistant, sensitive]. Make your choice in format 'Final Answer: resistant' or 'Final Answer: sensitive'.\n{gene_names}: MALSU1 MT-TD MT-CYB MT-CO2 HSP90AA4P FTLP1 MT-CO3 LUCAT1 RPS27AP1 RPS14P3 KCNRG MT-ND4L RHOB RPS8P3 PABPC1L SP140L CSNK2A2 RSL24D1 TPT1-AS1 RPL13A GOLGA5 ANP32B BCL7C BBX PSMB1 HNRNPRP1 CAV2 FTH1P1 MT-RNR2 RPL34P1 RPL13AP17 PMF1 RPL37A RPS21P4 RAD51 AMIGO2 KRT80 ARID4B CBX6 NEBL KRT13 GNB4 MT-ND4 IQGAP3 SAC3D1 MT-ND3 ALS2CL LIMD1 ECI1 HIST1H1E TOMM70A TRIM14 REV3L NUP88 NAV2 CDK6 MYL6B RPS7P10 LINC00240 TMSB10P1 PDIK1L MIB1 NCBP1 PDGFB SNRPBP1 TOMM40L FAM76A SLC38A6 PFN1P1 C14ORF2 RPL19P1 ACTN1 DDX18 USP24 PSMB7 ROCK2 HNRNPU-AS1 HSPEP1 PLEKHF2 COMMD1 CCND3 C19ORF53 CITF22-92A6.1 FOXK2 RTFDC1 SNX1 RPS5P2 MT-ND5 POLR1E SQLE CKB ATP5E RP11-752G15.6 PTGES3P1 DBN1 TNFAIP8L1 NUDC PPP1R8 CBX1P2 TXN2.", "role": "user" }, { "content": "resistant", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a cell. Your task is to predict its response to the drug Erlotinib: [resistant, sensitive]. Make your choice in format 'Final Answer: resistant' or 'Final Answer: sensitive'.\n{gene_names}: MT-TD HSP90AA4P MALSU1 MT-CO2 MAP1LC3A MT-CO3 CENPH MT-ND4L MT-CYB ASPM ACTN1 MT-ND6 MKI67IP AKAP12 ARL6IP1 RPS21P4 APLP2 MT-ND1 CALHM2 RREB1 SORBS2 ANKRD11 LRRFIP1P1 MT-ND3 MT-ATP8 CALM2P1 IL15 SPPL2A KDELR2 AGO3 KTN1-AS1 PCDH9 SREK1IP1 TGFB3 LAMC1 ECD CASZ1 MT-ND2 HNRNPA3 TPM2 ANXA2 ITSN1 IGFBP4 TADA1 GPRC5B ITGB1BP1 GOLIM4 EML5 IQGAP3 PIGA CDK8 MYB CEP85 DSTN CENPF MT-CO1 GCN1L1 TXNRD2 UTS2 ANLN RPS8P3 HSP90AB2P HNRNPRP1 FSTL3 KIF3A DHCR7 PPFIA3 ZNF92 KIAA1143 PRRG2 TFR2 YME1L1 SERBP1P1 MBD3 DYNC2H1 PALM2 AEBP2 P4HTM RPL6P12 ZNF639 MT-ND4 USP10 SPTBN2 LIMD1 COL8A1 LANCL2 MTHFS CCAR2 RP11-445N18.3 NCKAP5L GSN-AS1 UBN2 RTN4IP1 MT-ND5 CLUAP1 TOP2B ATP2B4 HSP90B2P SPECC1L KIAA1549.", "role": "user" }, { "content": "resistant", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a cell. Your task is to predict its response to the drug Erlotinib: [resistant, sensitive]. Make your choice in format 'Final Answer: resistant' or 'Final Answer: sensitive'.\n{gene_names}: MT-TD FTH1P1 MALSU1 RPLP1P13 FTLP1 RPS8P3 RPL13A RPS12P15 TMSB10P1 MT-CYB HSP90AA4P TMSB4XP1 RPL37AP1 RPL13AP17 NPM1P10 RPL35AP MT-CO2 RPS3A RPL37A RPS14P3 RPS16P5 MT-ND6 RPL34P1 RPL12L3 MYL4 GNB4 MT-CO3 ANXA2 CALHM2 RPS20 TPT1-AS1 KRT77 RPS24P1 RPL10AP2 PABPC1L RPL32P26 GAPDHP1 NAP1L1P1 GSTP1P1 RPS6KA1 CAV2 S100A9 RPL35A MAP1LC3A RPLP0P2 RPL27A RPL41 CHCHD2P1 NACA2 RPS4XP1 RPL19P1 RPL30P1 HSP90AB2P SHFM1P1 COX7CP1 MT-ND4L SRA1 TPM2 S100A11 SOX6 RPL8P2 OAZ2 UBXN6 EIF6 RPS21P4 RPS11P1 DENND1A RPL6P12 FIP1L1 CALM2P1 COX4I1P1 DYNC1I2 RPS7P10 RPLP2P1 RPL21P1 ACTN1 RPL18A YBX1P1 RPS27AP1 SERGEF CASZ1 RPS20P1 RPL23A RPL27AP NCLN CDK5 SLC25A5-AS1 GAS6 MT-ATP8 KRT18P10 ATP5G2 RPL31P1 TXN2 UBBP1 SETBP1 CSTA RPL15P1 NDUFA4P2 DSTNP4 CLTB.", "role": "user" }, { "content": "resistant", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a cell. Your task is to predict its response to the drug Erlotinib: [resistant, sensitive]. Make your choice in format 'Final Answer: resistant' or 'Final Answer: sensitive'.\n{gene_names}: MALSU1 MT-TD RPL13A LUCAT1 SCD5 FTH1P1 PABPC1L ATF6 MT-CO3 EIF4A3 ZRANB3 TXNDC9 AKAP9 RPS6KA1 KIAA1009 KRT80 RPL27A LRRFIP1P1 PHEX RPS24P1 KRT19P1 RPS27AP1 FUBP3 TARSL2 MT-CYB EGF FTLP1 SREK1IP1 RPL10AP2 SNRPD1 RPL18A RPS8P3 NDUFA11 TANC1 METAP1 EDIL3 STK38L KTN1-AS1 FA2H ARPC5 GNB1 RPL37A SNHG6 TM9SF2 BRD7 ATP5B MORF4L2-AS1 EP400 CHD7 C11ORF31 CELF3 GABPA SLC2A12 RPS20 ZC3H18 TIAL1 NOP58 SLC16A10 PTTG1 CRKL GPBP1 SMYD3 RPL6P12 RPL38P3 EPRS ETFDH PANK3 TPRG1L UQCRHP2 COL4A6 UBXN6 EID1 DLGAP1-AS2 PPIAP1 S100A2 NBPF12 RPL41 ALDH3A2 ACOT7 NAA40 CTC-506B8.1 MCPH1 RPL9P15 HADHAP1 RP11-65J21.3 ARPC1B EPG5 CLSPN BABAM1 RALA RPL27AP HPX RPLP0P2 EPHB2 RNF214 MBTPS2 TMSB4XP1 COQ3 KBTBD6 FAM173B.", "role": "user" }, { "content": "resistant", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a cell. Your task is to predict its response to the drug Erlotinib: [resistant, sensitive]. Make your choice in format 'Final Answer: resistant' or 'Final Answer: sensitive'.\n{gene_names}: FTLP1 MALSU1 MT-TD S100A11 TXN2 TSR2 MT-ATP8 GAPDHP1 HSP90AA4P NGLY1 MT-CO3 RPS14P3 MT-ND3 PABPC1L RPL15P1 COX6CP1 EIF4A3 PSMB1 CALM2P1 RPL13AP17 CSE1L RPL37A SLC25A5-AS1 RPS24P1 DUTP6 ATP5E EIF1AD S100A9 MT-CYB SLC26A10 TMSB10P1 YME1L1 RPL41 NPDC1 MED11 RPL34P1 RPS3A RPLP1P13 NPM1P10 HSP90B2P INHBB IMMP2L ACAP2 CCT5P1 HAGH GSTP1P1 TPM3 RPS29P20 SCARA3 RPLP2P1 PDIK1L PTPN18 PBX3 TMEM259 SYPL1 UBE2C NFIB POLA1 TRIP13 RPS27AP1 CHD3 UBE2L3 C11ORF73 RPL23AP12 CLDN9 SH3PXD2A UBA52P3 PSMG1 CD302 LDHBP1 GADD45G PRRG2 USP21 ADAMTS12 NKAPP1 C9ORF147 SH3BGR RNPEPL1 ARID3A GAS6-AS2 PXN-AS1 FAM102B RPS29 PSMD10 MIF4GD AC006369.2 MPHOSPH9 HNRNPDP1 MRGBP LIMD1 FMNL1 RPS4XP1 CCDC68 LDHAL6A C9ORF85 MRPL51P2 COPB1 SEC22A TUBA1C MT-RNR1.", "role": "user" }, { "content": "resistant", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a cell. Your task is to predict its response to the drug Erlotinib: [resistant, sensitive]. Make your choice in format 'Final Answer: resistant' or 'Final Answer: sensitive'.\n{gene_names}: RPL35A MT-TD RPL37A PABPC1L PTMAP2 HSP90AA4P RPL8P2 RPS8P3 FAUP1 NCLN KRT19P1 KRT18P10 HSP90AB2P TMSB10P1 DNAJA1P3 SERGEF KTN1-AS1 UBBP1 FTH1P1 MAP1LC3A RPLP1P13 MTA2 GSTP1P1 RPS12P15 HTATIP2 RPL13AP17 RPS21P4 FAM166A NINJ1 FTLP1 RPL14P1 ENO1-IT1 MT-CYB ARPC3 COX7A2L PSMB1 ACSL3 PSMB7P1 HDX IGFBP4 RPL27AP AKIRIN1 RPS11P1 RPL10AP2 MT-CO2 ARF1 LGALS3 RPL12L3 ZDHHC4 RPS14P3 MYL6B RPL31P1 SNRPD2P1 DENND1A GNB4 RPL27A TMSB4XP1 YWHAE RPL13A RPS23P1 CEP104 HDGFRP2 CFL1P1 EEF2K RPS4XP1 SERBP1P1 MALT1 COX5BP6 RBBP8 TAF1A KRT77 EEF1DP1 TK2 RNF32 ZNF222 RPE UNC5A NCKAP5L PSMB3 LL0XNC01-237H1.2 TRA2A NUMB USB1 RPS27AP1 TARS2 MLX TMBIM6 DNM2 RPL19P1 OS9 NR2F2-AS1 RFWD2 OSBPL9 NPHP1 CYSTM1 GPX4 RTF1 C1ORF174 PHF19 RPL6P12.", "role": "user" }, { "content": "resistant", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a cell. Your task is to predict its response to the drug Erlotinib: [resistant, sensitive]. Make your choice in format 'Final Answer: resistant' or 'Final Answer: sensitive'.\n{gene_names}: MT-TD MALSU1 RPL35AP GAPDHP1 RPLP1P13 FTH1P1 MT-CYB FTLP1 HIST1H4E RPL37A RPL13A RPS12P15 RPS23P1 CCDC82 PABPC1L MT-CO2 HINT1P1 RPL37AP1 MT-CO3 ACTB RPL18A RPL34P1 NCLN RPS4XP1 HSP90AB2P TCEAL8 RPL26L1 MRPL21 SLC40A1 KRT18P10 TAX1BP3 COX6B1P1 RBMS3-AS3 RPLP0P2 ANXA2 RPL24P2 RPL27AP TMSB4XP1 TXNDC9 RPS15AP1 UBE2CP1 RPL13AP17 EIF1AD MT-ND1 RPL19P1 MGST2 SRP14-AS1 DSTNP4 EEF1DP1 RPL30P1 SEL1L CCT3 GSTP1P1 RPL9P15 SNRPE RPS6KA1 RAD23B CALM2P1 MT-ND4 MAU2 DNMT3A MT-ATP8 TPT1-AS1 NUDC TXNRD2 MRPL51P2 KRT19P1 DNAJC9 PIN4P1 MRPL13 TMSB10P1 RPL23A TUBA1C GNB4 RPS24P1 SLC26A4-AS1 PSMB1 CFL1P1 DFFB RPS20 MT-ND6 MRPS6 GPATCH8 SAFB2 KRT80 RPL21P1 PIGA CLASP1 UCHL3 LDHBP1 UBBP5 CPA4 UQCRHP2 C7ORF55 ATP5E APIP RPL27A RBM18 TPM2 UTP3.", "role": "user" }, { "content": "resistant", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a cell. Your task is to predict its response to the drug Erlotinib: [resistant, sensitive]. Make your choice in format 'Final Answer: resistant' or 'Final Answer: sensitive'.\n{gene_names}: MT-TD MALSU1 MT-CYB MT-CO3 MT-ND4L MT-CO2 MT-ND2 MT-ATP8 MT-ND6 MT-ND1 MT-ND4 MTATP6P2 MT-RNR2 MT-ND5 MT-ND3 MT-CO1 U91319.1 MT-RNR1 KCNRG PNKD CAMK2N1 NEBL HMGN1P35 KTN1-AS1 CHD1 XBP1 NFATC3 ARHGAP29 SRSF2 ABHD3 ZC3H15 PNO1 TOB1-AS1 GDAP1 MTND2P5 AC016683.6 WDR52 STRA6 ATG4B UBXN6 LDHBP1 GSTP1P1 RHOC DECR2 MAP1LC3A TJP2 ALS2CL MBD5 UBR5 CIB2 TSPAN33 CBWD2 AC096664.1 IDI1 TLE2 ZFAT TCFL5 MTFMT ZDHHC12 KIAA0586 SLC25A37 CMYA5 FAM103A1 RAB11FIP2 RP11-624D20.1 GATSL3 ORC1 TMEM167A CTTNBP2NL BIRC6 SYT16 OPA3 PCNXL4 ZCCHC14 GTF2H2C AREL1 RP3-370M22.8 ZC3H12A CLDN9 ARL4C MPST GPBP1 TIMM10 RABL2A NAPRT1 CBX3P1 PIGT YBX3P1 NARS2 RPL13AP17 PLXNB2 B4GALT4 ACADVL STX16 MAPK1 HELB AKR1B1 STK38L MTIF3 TBL3.", "role": "user" }, { "content": "resistant", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a cell. Your task is to predict its response to the drug Erlotinib: [resistant, sensitive]. Make your choice in format 'Final Answer: resistant' or 'Final Answer: sensitive'.\n{gene_names}: MT-TD MT-CO2 PABPC1L MT-CYB FTH1P1 MT-CO3 FTLP1 RPL13A GSTP1P1 HSP90AB2P MALSU1 RPS27AP1 RPL35AP MT-ND4L MT-ATP8 RPS14P3 RPLP0P2 TMSB10P1 RPS24P1 MT-ND6 RPL8P2 RPL31P1 RPL13AP17 RPL37A RPL6P12 KRT18P10 ANXA2 RPL34P1 RPLP2P1 PTMAP2 RPL30 PRDX2 KRT77 RPS4XP1 RPS20 RPL23A RPL5P1 GNB4 RPS6KA1 RPS23P1 NACA2 COX6CP1 NPDC1 SSSCA1 RPLP1P13 HSP90AA4P PSMB1 RPL35A RPL38P3 UBBP1 GAPDHP1 RPL26L1 RPL12L3 TMSB4XP1 ANP32B MT-ND3 HNRNPA3P1 RPS12P15 NAP1L1P1 TXN2 RPS15AP1 RPL10AP2 HNRNPA3 NOL8 TXNRD2 KRT80 TPM2 NDUFB2-AS1 MT-ND5 RPS16P5 MYL6B BTF3 RPS7P10 QRICH1 EEF1A1P1 RPS29P20 YBX1P1 RPS3A MT-ND1 CAV2 RBAK SETBP1 ROPN1L PSMA5 ZFAT MYH10 SOX6 MTATP6P2 UCHL3 LDHBP1 PDIA4 NPM1P10 RPL27AP RPS21P4 RBKS NQO2 RBM4 YWHAE RPL19P1 NDUFS5P1.", "role": "user" }, { "content": "resistant", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a cell. Your task is to predict its response to the drug Erlotinib: [resistant, sensitive]. Make your choice in format 'Final Answer: resistant' or 'Final Answer: sensitive'.\n{gene_names}: MT-TD FTH1P1 HSP90AA4P TMSB10P1 RPLP1P13 RPL13A RPL35A RPL35AP PTMAP2 GSTP1P1 GAPDHP1 RPL23A FTLP1 RPLP2P1 MT-CO2 RPS27AP1 RPS8P3 MT-CO3 RPS3A HSP90AB2P RPS16P5 MALSU1 RPL32P26 ANP32B NAP1L1P1 RPS12P15 YWHAE MT-CYB RPL37AP1 RPL31P1 RPS14P3 DENND1A NUDC TPM3P1 RPL41 RPL12L3 RPL37A RPL10AP2 MYL6B COX7CP1 PMF1 HIST1H4E PSMB7 MYL4 FAUP1 RPS23P1 PRDX2 RPL13AP17 NDUFA10 NACA2 EEF1A1P1 HSP90B2P RPL27A TPT1-AS1 RPS21P4 TPM2 SRP14-AS1 RPL8P2 ATP5E NDUFS5P1 MT-ATP8 GNB4 PRRG2 RPS15A TUBA1C RPL11P5 RPS20 RPL24P2 SLC25A30 RBM26 TMSB4XP1 PABPC1L UBA52P3 RPL30P1 RPS7P10 B2M RPS11P1 CAV2 RPL27AP PTGR2 RPS29P20 KTN1-AS1 STK10 MT-ND4L RPS24P1 RPL19P1 MT-ND6 CALM2P1 TXN2 HNRNPA3 MT-ND3 RPL5P1 ARID4B SUB1P1 KRT19P1 RPSAP1 CFL1P1 TCEB2P1 DYNLL1-AS1 KRT77.", "role": "user" }, { "content": "resistant", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a cell. Your task is to predict its response to the drug Erlotinib: [resistant, sensitive]. Make your choice in format 'Final Answer: resistant' or 'Final Answer: sensitive'.\n{gene_names}: MT-TD MALSU1 MT-CO2 PABPC1L FTLP1 RPL13A RPS14P3 KRT77 MT-CYB RPL35AP FTH1P1 KRT18P10 RPL13AP17 ANXA2 GNB1 TXN2 RPS8P3 MT-ND6 RPL19P1 TMSB4XP1 MT-CO3 MT-ND4L CCDC82 CAV2 SCAF4 PTRH1 TPT1-AS1 B2M GSTP1P1 MYL6B KTN1-AS1 S100A11 CALHM2 HSP90AA4P HSP90AB2P TPM2 RPS21P4 NCLN RPL23A PTMAP2 ARPC2 DSTNP4 SETBP1 RPL24P2 CCND3 MT-ATP8 PSMB1 RPS20 RPL37A S100A9 KRT17P3 RPS15AP1 PRSS27 ITSN1 ATP5E RPL41 RPL37AP1 RPS16P5 RPL27A RPS12P15 RPLP1P13 QRICH1 HSP90B2P PLA2G4A PPIAP1 RPS24P1 FA2H RPS3A RPL18A YWHAE GPRC5B KRT80 TAX1BP3 GAPDHP1 RPS27AP1 TMSB10P1 RPL35A RPS6KA1 SERGEF RPL34P1 HINT1P1 RPL6P12 PRDX2 RPL31P1 RPS23P1 ITM2C APLP2 AHNAK MT-ND4 NGLY1 RPL14P1 COX7CP1 RPL8P2 TOMM70A RSG1 FIP1L1 SEC63 CHD5 RBM26 RPL21P1.", "role": "user" }, { "content": "resistant", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a cell. Your task is to predict its response to the drug Erlotinib: [resistant, sensitive]. Make your choice in format 'Final Answer: resistant' or 'Final Answer: sensitive'.\n{gene_names}: MT-TD MT-CYB FTLP1 MT-CO2 MALSU1 MT-ND4L FTH1P1 MT-CO3 RPLP1P13 SPIRE1 TMSB4XP1 MT-ATP8 RPL37A GSTP1P1 PABPC1L RPL13A TMSB10P1 INHBB KRT77 S100A9 GAPDHP1 B2M RPS12P15 RPL24P2 RPS14P3 CAV2 ANXA2 RPS21P4 GNB4 RPS3A RPS23P1 MT-ND6 KRT18P10 RPL19P1 MGST2 TXN2 RPL11P5 S100A11 MT-ND3 TPT1-AS1 RPS11P1 MT-ND2 RPS27AP1 SERPINE2 MT-ND1 RPL13AP17 RPL8P2 NEBL KLK6 RPS7P10 RPLP2P1 KRT19P1 RPS16P5 RPL5P1 RPL30 FAUP1 ATP5E RPL6P12 RPL18A CPA4 RTN4IP1 HSP90AB2P RPS24P1 RPS14 IGFBP7-AS1 RPL23A RPLP0P2 MT-ND4 PSMB1 IGFBP4 PRSS27 RPL35A LRRFIP1P1 RPS20 MT-CO1 HMGN1 ATP5G3 CHCHD2P1 RPL31P1 MYL6B QRICH1 GPRC5B YWHAE RPL34P1 RPL35AP SERGEF RPS8P3 PMF1 HSP90AA4P RPSAP1 CCDC82 UBA52P3 DSTN RPL12L3 SOX6 RPS5P2 NDUFA4P2 MYL4 CALM2P1 RPS4XP1.", "role": "user" }, { "content": "resistant", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a cell. Your task is to predict its response to the drug Erlotinib: [resistant, sensitive]. Make your choice in format 'Final Answer: resistant' or 'Final Answer: sensitive'.\n{gene_names}: MALSU1 MT-TD FTLP1 FTH1P1 TMSB10P1 RPLP1P13 RPS12P15 TMSB4XP1 PABPC1L RPL37A S100A9 RPL13A RPS6KA1 RPS14P3 PTMAP2 RPS24P1 RPL30P1 RPS21P4 S100A11 RPS3A NEBL RPL23A COX4I1P1 HSP90AB2P RPL37AP1 KRT18P10 ANXA2 HSP90B2P ATOX1 RPL13AP17 CSE1L RPS23P1 TADA1 MYL6B RPL35AP RPS29 TIMP3 RSG1 KRT77 RPL24P2 MT-CO3 RPS11P1 KRT19P1 GAPDHP1 RPL35A RPL27AP NGLY1 SUPT6H UBBP1 COG8 CASZ1 GPRC5B DNAJC21 PSMB7 STMN3 ANXA11 RPS20 IGFBP4 PSAT1 CCDC82 EIF3B SERPINE2 ABLIM1 CLUAP1 PREB GNB1 C12ORF23 GSTP1P1 LAMP2 RPLP2P1 ARPC1B ZC3H14 KLK8 CDK17 COX7A2L ARL4C RP11-744D14.1 CAV2 CD24P4 YBX1P1 YWHAG CALU KTN1-AS1 TMEM259 MT-CYB PLA2G4A SH3BGRL2 TANC1 FAM193A METAP1 ZFAND6 RNF217 SREK1IP1 TPM2 MRPS36P1 FDPSP1 MT-RNR2 SSH1 CALHM2 QRICH1.", "role": "user" }, { "content": "resistant", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a cell. Your task is to predict its response to the drug Erlotinib: [resistant, sensitive]. Make your choice in format 'Final Answer: resistant' or 'Final Answer: sensitive'.\n{gene_names}: RPL37A MT-TD MT-CO2 FTLP1 RPL35AP SPIRE1 RPS27AP1 MT-ND6 RPL19P1 RPL35A HTATSF1P2 MT-ND2 ARPC1A SRA1 TMSB4XP1 MT-ND4L MT-CYB PRDX2 ATP5E LRRIQ1 RPS3A S100A9 MT-CO3 SLIT2 USP3-AS1 RPS8P3 CDKN2AIP MT-ATP8 RPL14P1 BBX RPLP2P1 MAP1LC3A RPL23A B2M RPL30 INPP5K TMEM143 TCEAL8 RPL27A SERGEF DCUN1D1 LIMCH1 POLG NDUFS5P1 MRPL12 TMEM38A KRT18P10 PIGT RNMT SRI COX7CP1 RPS11P1 SHANK1 GHRLOS POLR2G NPDC1 CTC-425K20.1 RPL6P12 NDUFB2-AS1 SNAP47 CCDC142 FTH1P1 UQCRB TPM2 DYNLT1 SLC7A6 RPS6KA1 ATAD2 LRRFIP1P1 ARPC1B KRT77 PGDP1 PACSIN3 PDCD6IP VN1R82P NCKAP5L HPCAL1 PTK2B CCZ1 WFDC3 COX7A2P1 OAZ3 UQCRHP2 LMNB1 MDM1 CCND3 CAV2 RPLP0P2 UBBP5 RPS14 EIF2AK3 UBE2L4 RPP25 AAMP CTPS2 GFM1 DDX23 FAUP1 KRT81 RPL13A.", "role": "user" }, { "content": "resistant", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a cell. Your task is to predict its response to the drug Erlotinib: [resistant, sensitive]. Make your choice in format 'Final Answer: resistant' or 'Final Answer: sensitive'.\n{gene_names}: MALSU1 MT-TD MT-CO2 MT-CYB MT-CO3 NEBL MT-ND4L MT-ND1 KRT77 SRSF2 NEFH TMEM87B SIRT7 HSP90AB2P MT-ND6 PNO1 MT-RNR2 AC005154.6 MT-ND2 EPG5 NDUFV2 WAC-AS1 RIN3 MECR POLR1C PRKG1-AS1 MAP4K5 ERICH2 TRIM58 RAB5B RPL19P1 SAP30L NABP2 TMC6 ECHS1 POLR2B ALDH3B1 POMGNT2 TTC21B ZNF781 NUDCD3 ANP32A NAA50 GCOM1 CCNL2 RPL13AP25 UPF3A RP11-395C3.1 PIGQ RPL6P12 LAMB1 FLVCR1-AS1 GAPDHP1 UPRT PRR13 CMTR2 FAM76A PKD1 TOP1MT XPNPEP1 EPB41 YIPF5 MAP4K4 SRGAP3 HNRNPA3 TFEB HSA-MIR-7162 PARN RPL31P1 VPS4B GSTA4 PTPRT COPB1 EIF4A3 MLPH FNTA ALCAM YWHAE USP42 CTD-2228K2.7 AHSA2 MT-ATP8 PTGR2 ARGLU1 LA16C-380H5.5 VPS9D1-AS1 PARP9 PIEZO2 DSTN CYP4V2 RPL13A CCDC109B AC239860.1 POLR3K CYP51A1 ANKRD54 S100A5 ZNF337 RP11-33E24.3 CCDC82.", "role": "user" }, { "content": "resistant", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a cell. Your task is to predict its response to the drug Erlotinib: [resistant, sensitive]. Make your choice in format 'Final Answer: resistant' or 'Final Answer: sensitive'.\n{gene_names}: MT-TD MALSU1 FTLP1 FTH1P1 MT-CO2 KRT77 MT-ND4L MT-CO3 TMSB10P1 CAV2 RPLP1P13 RPS12P15 HSP90AA4P MT-CYB TMSB4XP1 GSTP1P1 RPL13A RPS11P1 GAPDHP1 RPS27AP1 RPL5P1 RPL11P5 ANXA2 PABPC1L SNRPD2P1 TPT1-AS1 RPL31P1 MT-ND3 RPS8P3 MYL6B UCHL3 RPL30P1 RPL13AP17 RPS6KA1 RPS3A S100A11 MT-ND6 RPL37A EIF1AD RPS15AP1 RPL12L3 RPL35A PTMAP2 KRT19P1 RPLP2P1 GNB4 CCDC82 RPS24P1 RPS20 KRT80 MT-ND2 MT-ATP8 HSP90AB2P RPS14P3 RPS16P5 NACA2 NDUFA4P2 KRT18P10 RPL24P2 TXN2 RPL34P1 HSPEP1 IGFBP7-AS1 SLC40A1 RPL14P1 RPS23P1 DSTNP4 SF3B3 SSSCA1 RPL15P1 TPM2 NDUFC1 CSTA RPL35AP PSMB1 YWHAE S100A9 IGFBP4 RPL37AP1 GOLIM4 CFL1P1 YBX1P1 TUFMP1 PDIA4 RPS3AP1 MT-ND1 RPS5P2 EEF1A1P1 RPS4XP1 RPL30 PRSS27 CBFA2T2 NCLN MRPL51P2 YWHAG RAC1P1 RPL26L1 QRICH1 RPSAP1 RPL23A.", "role": "user" }, { "content": "resistant", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a cell. Your task is to predict its response to the drug Erlotinib: [resistant, sensitive]. Make your choice in format 'Final Answer: resistant' or 'Final Answer: sensitive'.\n{gene_names}: MT-TD MT-CO2 MT-CYB MALSU1 MT-CO3 PABPC1L MT-ND2 FTH1P1 FTLP1 RPL37A RPL18A RPL13A HSP90AA4P RPS14P3 GSTP1P1 MT-ND6 MT-ND4L RPL23A MT-ATP8 RPS8P3 TXN2 GAPDHP1 RPS15AP1 HSP90B2P MT-ND1 TCF3 RPS21P4 RPS14 KRT19P1 SHFM1P1 LGALS3BP RPL31P1 KRT80 EIF2S2P2 RPL19P1 RPL12L3 CALM2P1 RPL37AP1 MT-ND3 TMSB10P1 KTN1-AS1 DHX37 RHEB S100A9 MRPL22 RPL30P1 KRT77 KRT18P10 TPM3P1 SEC63 RPL11P5 NAP1L1P1 RPS3A ATP5I RPS6KA1 TMSB4XP1 POMT1 MARC2 PDCL3 MESP1 RPLP1P13 RPL22L1 RPL27A BANF1 NPDC1 MYH10 TPT1-AS1 ISCU QRICH1 RPL30 SLC38A9 UCHL3 CALM1P1 CFL1P1 HELB MTA2 NDUFS7 RPL35AP RPLP2P1 COX6B1P1 GPX1P1 C8ORF76 CMC1 RPL35A PER1 TCEA1P2 PSMB1 RTFDC1 SMAD6 RPS23P1 FXYD5 RPS29P20 ZNF10 HMBOX1 RPS3AP1 CD68 CIR1P2 MGST2 KRT14 METRN.", "role": "user" }, { "content": "resistant", "role": "assistant" } ]

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