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[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 MT-CO1 CLDND1 MBP PPIA FTH1 MT-CYB ABCA8 MT-CO2 TBC1D15 PTMA RPL3 TTYH2 ITM2B UBL5 MT-ND2 APLP1 MT-ND4 MAL TSC22D4 ERBB3 VAMP2 FIGN EDIL3 SCD RABAC1 MOBP HHATL MT-ATP6 MTATP6P1 CALM2 CARNS1 CAB39 ELMO1 ARF1 GDI1 PIN1 AZGP1 MAG MYRF ZBTB20 PRNP ATP1B1 TMEM59L SLC39A10 PSAP FRMD4B TUBB2B EPS15 ATP6AP2 CDH19 HEPACAM RPL37A ERMN RPL39 RELN CREB5 STK39 HN1 ACTB CSDE1 PCMT1 GPIHBP1 SERINC3 RTN4 ELOVL7 MTRNR2L1 PIP4K2A CLDN11 TUBA1A PEBP1 RAD23B NDUFA2 FIGF CLMN SERINC1 ATRN RPL8 SLC22A17 KIF19 NECAB1 GLUL MT-ND1 PEA15 ACTG1 TMEM88B RPL7 TMTC4 LGI3 RAB3IP DPYSL2 C6ORF1 PEX5L NUAK1 EVI2A PPP1R14A ZCCHC24 SULT4A1 EIF1 RAB2A RPS4X EPB41L3 TGOLN2 ARFGAP2 CFH RP11-219A15.1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "oligodendrocyte A",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 MBP SPP1 EDIL3 CLDND1 QKI RTN4 CRYAB ITM2B TF TBC1D15 KIF1A APOD PEX5L CREB5 TMEM144 ATP1B1 PTMA RPL32 MT-CO1 QDPR RPS28 CALM2 CLDN11 MTRNR2L1 MOBP DOCK10 MT-CO2 PEA15 APOLD1 GPR37 NCKAP5 BIRC5 ENPP2 PTGDS APLP1 ZBTB20 RPL21 CNP CADM2 CSRP1 HSP90AA1 RPS26 CFL1 GRINA TM2D3 HSPA2 NFE2L1 DPYSL2 HHATL OST4 NECAB1 RAB6C-AS1 NDRG2 TSC22D4 DNM3 PBX3 RPL35 MARCKSL1 MFGE8 CHMP4B RPL13 GAPDH ELOVL7 TBCA FAM198B SYT11 NDUFC1 ATP9A MTUS1 TMSB4X RORB PON2 SPOCK1 RPL13A PSD3 ARPC4 PSMD12 TUBD1 MT-ND1 PCDHA10 ARL6IP1 MT-ND4 MT-ND5 PRKAR1A ATXN10 NKX6-2 CAMKK2 GNAQ NPAS3 FAM96B CAMK2G TANC1 NDUFA13 CMAS NGFR RPL31 TMEM235 MRPL47 PSAP OR6D1P CNDP1 ATRN NCAM2 C10ORF90 SKP1 CD9 SLC24A2 SSBP3 SQLE S100B CLIP2 TUBB4A RHOB MT-ND2 DNER UQCRQ TUBA1A HTRA1 TMX4 SCD ANKRD18A ABCA8 TXNIP ERBB4 MT-CYB ACTG1 PADI2 SAP18 PITHD1 RPL23A ZNF343 OCIAD1 PTPRS PPIH ARHGAP35 NCOA4 RPL7 PSMC3 GLUL AZGP1 PRUNE2 ARPC5L SERINC3 PNKD METTL7A FKBP1A TMSB4XP4 RP11-597D13.7 KIF19 ATP1A1 YWHAZ EVI2A RPL3 RPS12 RPS3A RP11-20I23.1 ATP6V0C MTRNR2L6 RPL41 GTF2H2C_2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "oligodendrocyte A",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 MT-CO2 MTUS1 CLDND1 EDIL3 MT-CO1 MBP TF SCD MARCKSL1 CADM2 MT-ND3 MT3 HSP90AA1 RAB3B ACTB MAP1B PIP4K2A MT-ATP6 RPL37A MTATP6P1 ATP11C MT-ND4 S100B ERBB4 ARFGAP2 HEPN1 RPL38 PTMA PTGDS ST18 UBB ZBTB20 RPS10 MT-ND2 KLHL5 ARL8A EDF1 RPL36A SPRYD3 PCMT1 MOBP CNP TTYH2 RAB5C PRKCE RTKN ANLN DSTN MT-ND1 PVRL1 APOD UROD TBCB MTRNR2L8 EVI2A RP11-597D13.7 RPS4X RPL31 TXNIP BNIP3 RTN4 MT-ND5 PDE1C WIPF1 RPS12 TSC22D1 ABCA8 CTNND2 HSD17B6 FKBP4 APLP1 EIF1AX MAP7D1 METTL7A GPX4 PDK4 SPP1 CHN1 CALM2 VAMP2 PSAP TPD52 YWHAB FIS1 EIF1 MTX3 PREPL FTL PEG10 SRP9 PHYHIPL UQCRB CRIM1 SERPINI1 TMEM130 MTRNR2L12 ADAMTS1 RHOB SELT SLC22A17 NFIA GLUL ARPP19 PAQR8 RPL21 YAF2 TMSB4X RTN3 SPCS2 NDUFS6 KCNJ10 CORO1B AP2M1 RAB31 PRKAR1A ATP6V0C RP11-20I23.1 ALDOA RPL13A PLEKHD1 HNRNPA1P40\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "oligodendrocyte A",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 TF ZBTB20 SPP1 ATP1B1 RPL37A SEPP1 MTRNR2L1 HHATL FOS PSMC3 METTL7A PTGDS ATP6AP2 APLP1 PSD3 CNP NFIA SEMA3B RP11-111M22.2 RTN4 MT-CO2 MT-CO1 RPL11 GLUL MBP MT-ND2 RASGRF1 BCL6 MT-ND3 PRUNE2 TKT TMEM144 PGK1 RPL21 STMN1 SLC9A6 GDE1 FTL ST18 CCDC121 FKBP8 SLC2A1 TPPP PEBP1 MTG1 JUNB JUND TMSB4X PJA2 GPIHBP1 RPL23A NKX6-2 RPS27A BIRC5 MOBP RPS28 LRP4 RPL35 PARP14 PRDX1 CDC37 ACTB PROX1 MRPL33 CBX6 CKB LMBRD2 TMEM151A INPP5F RNF181 CD9 HSP90AA1 RPL13 EIF1B BNIP3 PRKACB YAF2 KIF21A MCMDC2 RANBP1 TBCB RPL26 MYRF RSL24D1 GUK1 RGCC CRYAB DOCK10 CXXC4 ATP5O TMTC4 COL4A5 VAMP2 CLSTN1 CFL2 PTPRS SERINC1 WIPF1 NDUFS6 CDK5 STUB1 TMOD2 LANCL1 SSTR2 EIF1 SKP1 EDIL3 MGST3 HAPLN4 FIS1 ZNF574 PDE1C SPARC PDK4 HDLBP WSCD1 PNMAL2 PPP1R14A SEPT4 PSMD2 PSAP TNS1 NDRG2 MT-ND4 TANC1 SERINC3 GPR37L1 ARL8A TUBB4A RTN3 S1PR5 COX5B SLC24A2 RPS10 RASGRF2 MTRNR2L8 TGM2 C10ORF54 KLC1 QKI MTRNR2L12 ATP5J MIEN1 MAL ZNF385D SYTL2 RAB3B ATP6V0C RP11-20I23.1 MTRNR2L6 PLEKHD1 HNRNPA1P40 CYB5R3 DNAJC21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "oligodendrocyte A",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 MT-ND4 MOBP TBC1D15 TMEM144 MBP PTGDS SEPP1 MARCKSL1 SCD TUBA1A HSP90AA1 TTYH2 BCAS1 PAQR8 SPP1 FTL PRNP VWA1 PPP1R14A CNP SCD5 QKI MT-ND3 CYP27A1 GAPDH STMN1 MAG APP MYL6 TF DNAJC21 EYA4 IQSEC1 TIMP2 TMEM151A CADM2 SEZ6L2 MRPL11 MT3 PIP4K2A MT-ND2 CRYAB UBE2D2 MT-CO2 PSMA7 CLDN11 MAPK1 MAP1B SSBP3 EIF1B AIF1L NCOA4 ZCCHC24 FOXO1 CTC-575D19.1 MT-ND4L FARSA DNER ACOT7 CRKL ST18 MT-CO3 RTKN NDUFA12 ASPDH CPNE2 TMEM63A TMEM230 PTMA MEGF10 MMD SLC22A17 RPS5 HSPA2 ARL8A NAA38 HIGD1A RAPGEF5 TUBA1B CMTM5 PLIN3 OAT RP11-404G16.2 CNDP1 CARNS1 GUK1 TMEM88B PTPRS SLC24A2 ACP1 CDC42SE2 PPP2R2B ZBTB20 CHADL SERINC3 DHCR24 NPTN PRKAR1A FSTL5 NDUFB10 RPL12 ANLN LRP2 AES EPS15 TSC22D4 TXNIP NDUFAF3 PET100 IDI1 GSTO1 ATP6V0E2 ENPP2 AZGP1 FBXO2 OCIAD1 RPL21 ATP1B1 CLMN LGALS1 RAB6A SEPW1 PPP2R2C TMEM235 NECAB1 ITM2B OAZ1 ARFGAP2 ZNF385D HNRNPA1P40 RPL36A MIF RAB3B SYTL2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "oligodendrocyte A",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: TF MBP RAB3B PIP4K2A HTRA1 ASPA PTMA IQCK PPM1A SOX2 LANCL1 QKI PDE1C MAPK8IP2 ST18 PDK4 SEMA3B CD24 ZFHX4 RHBDD2 RPL32 STMN1 CREB5 VPS35 RPL31 CLDN11 NACC2 NFIA KCNJ10 TMEM144 ARFGAP2 SPCS2 NCAM2 SEPP1 HSP90AA1 NIPA1 BLOC1S1 CLMN PIEZO2 SQLE CNP S100A6 PLP1 ITM2B GNAQ EPS15 ENPP2 ARL8A RPL35 MTUS1 NDUFC1 PPP2R2B GLDN PAQR8 PTGES3 RP11-597D13.7 EDIL3 LLGL2 RTN4 DPP6 ERBB3 CRYZ SH3BGRL3 CALM2 SLC24A2 EPB41L3 MAP1B MT-ND2 TMA7 HNRNPA1P40 GTF2H2C_2 CYB5R3 SYTL2 ZNF385D\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "oligodendrocyte A",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 MOBP ITM2B NDRG2 EDIL3 APLP1 CLDND1 MT-CO1 FTH1 RP11-597D13.7 PRUNE2 TSC22D1 MARCKSL1 PTGDS RPL3 RPS28 ZBTB20 CNP RPL21 ATP1B1 MBP SQLE GNAQ MT-CO3 HHIP RP11-111M22.2 TF CFL1 RPS12 MT-ND1 TLN2 RPS6 SCD5 PTN RAB7A BSG GPR37 TPPP DKK3 CALM2 SCD THY1 PTPRS EIF1 SKP1 CLIC4 OLA1 MT-ND4 NCOA4 STMN1 PGAM1 TMSB4X MTRNR2L12 SEPP1 SLC22A17 MTRNR2L1 RP11-404G16.2 RELN NDUFB5 FAM107B PPIA TMEM63A HSP90AA1 SPTBN1 MT-CO2 MYEOV2 QKI ERBB3 GAPDH MT-ND3 PDE1C PPP2CA OAT HSP90AB1 DNM3 PTMA DHCR24 RTN4 SEPW1 ALDH1A3 RPL35 ANLN GPRC5B ACLY PIP4K2A ATP6V1C1 DLC1 RTKN TMEM144 SPCS2 ZNF536 CKB TMEM160 DOCK10 YWHAQ SERP2 FAM134A SEMA3B PI16 QDPR CALM1 MTRNR2L6 TBC1D15 RPS3A HNRNPA1P40 PLEKHD1 GTF2H2C_2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "oligodendrocyte A",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 TF MBP SPP1 PTGDS RTN4 QKI GDI1 ATP5E MYEOV2 PRNP MT-ND4 TLE4 MAPRE2 ACTB MTCH1 ITM2B DNAJC21 MTRNR2L8 POLR2J C7ORF50 KLC1 ZFHX4 CPNE2 NDUFA13 MOBP ANLN MT-CO3 DNM3 TBCA TMSB4X EPS15 NDUFB1 VAMP2 CRYAB PTN TUBA1B CALM3 SEPP1 RPS28 ATP1B1 NFIA SALL1 STUB1 EYA4 TMEM144 ITPR2 PPA1 TTYH2 NDUFB4 MT-ND1 SCAMP5 SCD SLC31A2 DPP6 PDK4 RPL38 JUN NFE2L1 PAQR8 NHP2L1 YIPF3 RPL23A FTH1 PPP1R14A NPAS3 LGALS1 SOX6 RP11-404G16.2 MFGE8 FMO5 SV2B RPL32 ERMN ZCCHC24 MTUS1 ATP6V0D1 KAL1 LCNL1 SYNPR PSMB5 UHMK1 PRKAR1A PGK1 CD99L2 MAP1B ENPP2 TMEM63A S100B RHOA CTBP1 CYP27A1 PSAP MT-ATP6 CLDN11 CARNS1 UQCR10 SLC6A1 PIP4K2A RHOB HEPN1 RPL26 ATP6V0C RP11-20I23.1 CTC-575D19.1 HNRNPA1P40 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "oligodendrocyte A",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: TF MBP ZNF385D TMEM144 STMN1 PLP1 ST18 HHATL FRMD4B QKI RTN4 MARCKSL1 CRYAB ANKRD18A PSD3 MOBP NDRG2 TMSB4X MTX3 MT-CO1 TLE4 LINC01296 PPP1R14A GLUL SEPP1 MT-CO2 TUBA1B S100A1 SH2D6 MAP1A SPP1 STAG3L5P PTMA GPRC5B BCAS1 CLDND1 PTGDS ISCU MT-ATP6 PRKAR1A MTUS1 CAPZB SAP18 INPP5F S1PR5 UQCRQ NECAB1 PGRMC1 SUMO2 DHCR24 GNB1 MSMO1 NAT8L OPA1 SEZ6L2 CTNNB1 COX7A2 OAZ1 YWHAG MAP2K4 ABCA8 ATP5H VAMP1 MED10 DRAP1 SCD ELMO1 HSP90AA1 RAPGEF5 TOMM20 BEX4 RPL37A ZFHX4 PPDPF EIF1 AURKAIP1 NARS GSTT1 RPS27A RNF152 PDE1C RBX1 DGUOK ARFGAP2 GTF2H2C_2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "oligodendrocyte A",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 TF TBC1D15 MBP SCD TMA7 MT-CO1 DHCR24 ATP1B1 MT-ND3 MT-ND4 GAPDH PTGDS HNRNPA1P40 MTRNR2L1 YWHAZ MYRF SPP1 TMEM144 S100A1 CNTNAP3 SLC24A2 MT-CO2 CNP MAP1B RTN4 ELMO1 PAQR8 RTKN NR1I3 RPS27A MTRNR2L12 COX8A MIR6723 PSMC3 APLP1 MOBP YWHAB RPL35 CLDND1 PCDHA4 RPS5 MT-CYB CLMN HEPACAM GSTO1 RPH3A SERINC3 DYNLL1 COX4I1 SCN1B NFE2L1 KIAA1755 DPYSL2 SRP9 LRP2 GPR37L1 TPT1 RPS3A NKX2-2 RASGRF1 HHATL YWHAQ ALCAM EID1 RP11-597D13.7 PDK4 SPOCK1 RAP2A PEX5L MT-ND2 RPL38 NDUFA11 PKM USMG5 JUND BLVRB TMSB4X PADI2 GLUL CALM2 EYA4 FTL MRPL55 GUK1 PROX1 DNAJA1 GRM3 PPDPF SCOC STMN1 SEPP1 APBB1 PJA2 ARL8A UQCR11 SYPL1 ZBTB20 TUBA1A PPIA PPP2R2C ST6GALNAC3 EIF1 COX6C NACC2 DNM3 RGCC CARNS1 QKI CTSD RPL12 FAM127A UBE2D2 PPP3CB RPS26 ST18 ARFGAP2 TERF2IP MFGE8 DYNLRB1 KLC1 RAB3B SYTL2 MTRNR2L6 TRIM59 MIF\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "oligodendrocyte A",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: TF MBP PLP1 MT-CO2 ZNF385D CALM2 APLP1 RP11-111M22.2 MT-ND2 AK5 NKX6-2 CLDND1 ST18 PAQR8 RPL37A ZBTB20 PTGDS SCD STMN2 TMEM144 MOBP GPIHBP1 RPS6 SPP1 OR6D1P MT-CO1 PIP4K2A RPS15 SEPP1 PEBP1 OLIG1 RPL21 CNDP1 SPOCK1 BCAS1 RNASE1 MAP1B EDIL3 HNRNPA1P40 ANKRD18A SLC31A2 ERBB3 APP ACOT7 RPL38 PRKAR1A EIF1 TCEAL7 ARPP19 MT-CYB KIF1A OAZ1 LANCL1 PCDHGA10 TMEM88B SLC24A2 SOX10 CTSD YAF2 ADARB2 COPE MT2A MT-ATP6 TSC22D1 SKP1 HHATL CORO2B RPS27A APLP2 TMSB4X NFIA MT3 NDFIP1 MRFAP1 NPPC SCD5 PSD3 SLC38A1 FRMD4B CNTNAP3 ARL6IP1 SARAF ACTB KCNAB2 TTYH2 SPTBN1 SCOC KIF21A ADSS EIF1AX RPS28 CYB5R3 SLC6A1 CALM3 CLIC4 GPX4 C12ORF57 BEX2 JUND THEMIS2 HCN2 NDRG2 RPL3 TXNIP EIF1B QKI CARNS1 FAM127A FA2H CNP MLF2 MT-ND1 RTN3 SYT11 NDUFS5 CHMP5 EPS15 SPARC ITM2C SPATA13 MT-ND3 MT-CO3 HSPA2 TOMM22 OST4 DOCK10 GNB1 PRKACB DNER OPALIN FSCN1 TOMM20 EDF1 RP11-404G16.2 TUBA1A PDE1C ASPA TOMM7 FAM96B ABCA8 MAP7D1 ATP5H POLR2J PPP3CB ATP2A2 MARCKSL1 PTMA TLE4 CTC-575D19.1 QDPR SOX2 GLUL TALDO1 RAB1A PSAP COX4I1 EIF5A2 C1ORF105 LINC01296 B3GALT2 PPAP2B CD9 HSP90AB1 ZCCHC24 PADI2 CLDN11 MRPL55 ATP6V0E2 CFH PGK1 PLEKHD1 RAB3B GTF2H2C_2 TBC1D15 SYTL2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "oligodendrocyte A",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 APLP1 EDIL3 DNM3 CLMN RPL18A CALM2 CAPNS1 ATOX1 PAQR8 MOBP MBP PSAP RAPGEF5 MT2A ARL8B MYEOV2 RPL37A ATP5G2 TTYH2 MTRNR2L1 RPL41 EIF1 MT-CO1 LANCL1 SLC6A1 RPL13 QDPR VAMP2 SLC24A2 TRMT112 PTMA PSMC5 SEPP1 CRYAB PMEPA1 GPIHBP1 RPL35 GLDN DKK3 MAG MT-ND1 CLDND1 RTN4 RAB9A OAT ERMN S100A6 GPRC5B TXNIP CD63 CLIP2 GSK3A DPYSL2 RPS12 TUBA1A MTCH1 UQCRC1 ERBB3 SYT11 CMAS SNRPE ATP6V0C MTRNR2L8 CYB5R3 GADD45B FOS ATXN10 PIP4K2A SLC22A17 UBC HEPACAM SPP1 PRNP HSP90AB1 RP11-632C17__A.1 METTL7A TCEB2 OCIAD1 RPL7 MAL RPL26 MYRF FIGN CNP HSPA8 RHOA RABAC1 OLIG1 ARF5 MED10 JUNB SERF2 HSP90AA1 GPR37 ANLN PPIA ZBTB20 EXTL2 TMEM144 RPS15 C14ORF132 TMSB4X COX4I1 SLC25A6 MT-ATP6 AP2B1 PON2 ZNF536 EPS8 LGI3 RPS27A MTRNR2L12 RP11-20I23.1 TOMM20 ABCA8 ERBB4 RPL38 SERINC1 ALCAM SPOCK1 MAP1B RPL23A RTN3 SEPW1 ITM2B RPL3 ZNF385D ARFGAP2 RPL17 RPL17-C18ORF32 ATP6V0E2 CFH OR6D1P\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "oligodendrocyte A",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 MT-CO3 TF MBP RPL37A MT-ND5 NINJ2 MT-ND4 MTRNR2L12 MT-ND2 EDIL3 ZBTB20 RTN4 OLIG1 NCAM2 LGI3 PEX5L ITM2B RAB6A EIF1 TMEM63A ANLN FTH1 TCEAL5 CHADL ERBB3 SLC9A9 NPTX2 MT-ND4L CTSD RGCC GHITM MT-CO2 SNAP25 EYA4 UQCRQ NECAB1 PPP1R14A QKI DPYSL2 MT-CO1 APLP1 OR6D1P TRMT112 RLIM ACSS1 RPL31 MTATP6P1 SNRPN RPL23A MAL CD9 BIRC5 TPD52 CDH19 PRDX2 NUPR1L RPS6 PJA2 STAG3L5P AZGP1 MT-ATP6 PTGDS GPM6A AIF1L SCD CREB5 MAG WDR47 VWA1 DOCK10 OCIAD1 PRKACB STAB1 ARL6IP1 TXNIP UROD ABCA8 LINC01296 PGRMC1 RPS15 CDC42SE2 EDF1 TMEM144 CLIP3 HHATL TRIP6 RPL35 ESCO2 MAP1LC3B SLC38A3 KLC1 CXXC4 STMN1 PTMA APP FLT1 LANCL1 DNM3 VAPB SYTL2 RAB3B ZNF385D PPP3R1 TRIM59\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "oligodendrocyte A",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 DHCR24 MBP SPP1 SEPP1 DPYSL2 MT-CO1 PTGDS TMEM144 TF MT-CO3 CNP MT-ND2 MT-CO2 TMCC3 SPOCK1 MT-ND1 FTL CLU PIP4K2A GPRC5B EPS15 SCD NUDT21 TTYH2 RPL37A MT-ND4 SLC24A2 SEPT4 KLC1 MTRNR2L12 MTUS1 CFL2 CALM2 RPL21 TXNIP PTMA ANLN TSC22D4 MOBP PPP2CB GNAQ GDE1 PRKACB GNB1 MTCH1 KLHL5 MYRF ITM2B ZBTB20 TALDO1 SHC4 UBB HHIP TPPP FASN ADARB2 ALKBH7 LANCL1 RPL11 MDH2 CSRP1 APP MAP1B ATP5E JUND HSPA2 STUB1 CFL1 ACTB MARCKSL1 NDUFAF3 RHOB FKBP8 QDPR EIF1AX PROX1 HSP90AA1 PTRF HSPA8 RTN4 MTRNR2L8 TERF2IP CPNE2 ERMN DPF3 CARNS1 FMO5 PARP4 TMEM63A TGOLN2 COX7A2L CNDP1 ZCCHC24 WASL MT-ND5 TMEM151A ZFP36L2 ZFHX4 ENPP2 BCAP31 MEGF10 MRPL47 TMEM117 PEBP1 ATP2A2 SPTBN1 EIF1B CRYAB SEMA3B MYOT ST18 PLS3 EIF1 S100B SLC22A17 RPS10 TMSB10 OCIAD1 CYB5R3 FAM127A ARHGAP35 NPAS3 TNS1 MTX3 CD9 RPL13 RAPGEF5 NDFIP2 PTPRS FTH1 SYNGR1 ISCA1 PPDPF AP1S1 EDIL3 UBC MT-ATP6 KIF1A ASPA HEPACAM ARPC4 RP11-111M22.2 ADORA1 MPP1 MAL NECAB1 KIFAP3 SRP14 DNAJC21 TBC1D15 RAB3B LINC01296 B2M SYTL2 COX6A1 RPL36A GTF2H2C_2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "oligodendrocyte A",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 MBP PTGDS MAP1B ANKRD18A MT-CO3 PTMA FSCN1 TF EDIL3 ARL6IP5 CREB5 PIP4K2A ETFB RP11-597D13.7 GLUL TSC22D4 ACTB CRYAB MT-ND2 APLP1 MOBP TM2D3 RTN4 RPL32 CLIC4 PEBP1 GABRA1 MT-ND5 MAPK1 NDUFB2 YBEY DOCK10 MAP1A HSP90AA1 RHOB CLU YWHAB FOLH1 CNP LRP2 EDF1 SOX2 GBE1 LCAT FTH1 MT-ND4 HTRA1 PRUNE2 ATP1B1 SLC1A3 MT2A CD9 MTRNR2L1 MT-CO1 SKAP2 TMEM144 PPP2CA AP2B1 CTNNB1 CFH HSPA2 VAMP2 EPS8 PTRF STMN1 SNX3 SCN1A MRPL15 AES MORF4L2 APOD HIGD1A CYP27A1 CPLX2 SERP2 QKI DNER TMTC4 RORB PEA15 MARCKSL1 TOMM20 CCDC25 ASPA APBB1 DNAJC5 TMSB10 TMSB4X EPB41L3 SEMA3B VDAC2 SPCS2 GPR37 TUBA1A PAQR8 SSBP3 SCD LGI3 RPL21 ZBTB20 FRMD4B DRAP1 SYT1 CCDC124 RPL11 S1PR5 RAPGEF5 TTYH2 SCN1B TMEM63A RAB3IP AP1S2 MAL RPL13 RSL24D1 AP1S1 RPL35 SNAP25 ARF1 ABCA8 COX17 DLC1 MAG AK5 PPP1R14A SEPT4 HCN2 NDUFB5 LMBRD2 TRIM59 MTRNR2L6 SYTL2 ZNF385D RAB3B RPS28\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "oligodendrocyte A",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 MBP MT-CO2 TUBA1A SPP1 ATP1B1 RP11-111M22.2 CLDND1 TF RTN4 CTSD RPS15 HSP90AA1 SPOCK1 CALM2 SYT11 ATP5G2 GPRC5B CTNNA3 CADM2 MT-ND2 CRYAB KCNJ10 ZBTB20 MYOT CLDN11 MT-ND4 TXNIP APLP2 HNRNPA1P40 TMEM63A PRKACB KLC1 PTGDS TALDO1 TLE4 FAM127A SEPP1 CNDP1 TUBA1B ENPP2 SEMA3B DDR2 PEA15 RPS27A MYL6 PEBP1 UHMK1 ATP5I PADI2 POLR2L USMG5 JUND MTCH1 SPATA13 EDIL3 KIAA1755 MARCKSL1 MT-CYB HSPA2 SEPT4 YWHAH SKP1 SMS ARF5 CLU RPL26 HEPN1 SLC24A2 HMGCR MOBP GPX4 DOCK10 PPP2R1A GDE1 CTBP1 NR1I3 RNASE1 SUB1 SEPW1 CREB5 RPL31 IQCK MTUS1 PRDX2 MAG UBE2V2 ATP1A1 PTMA APP RTN3 ATP6V0E2 ADORA1 NIPA1 DPYSL2 PPDPF MAPK1 PRKAR1A TUBB4A APBB1 HHATL TBCA LINC01296 COX5B APLP1 ARL8B DYNLL1 PIP4K2A FKBP8 TMSB4X PPP1R14A MIR6723 MT-CO1 CFH BIRC5 RPL7 GTF2H2C_2 RPL21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "oligodendrocyte A",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 MBP PTMA ACTB SARAF SCD TXNIP MYEOV2 FTL NPAS3 MT-ATP6 ABCA8 TMEM63A TMEM144 PEBP1 VAMP2 QKI MT-CO3 LGALS1 PRKACB TIMP2 SPP1 MOBP MAG CRYAB PDK4 PI16 NACC2 GLO1 PTGDS HSP90AA1 APLP1 TF ATP5G2 CHGB PINK1 CFL2 RAB3B AIF1L ZFHX4 POLR2L CLMN GPRC5B ARF1 RPL13 TBR1 DPYSL2 ERMN SLC25A4 PITHD1 RABAC1 MT-ND2 ARL1 SUCLA2 RAB40B DHCR24 CDK17 CHADL RPL8 MT-ND3 COX5B APOL6 NEGR1 ATP5E HHATL ANLN ZCCHC24 AES SUMO2 CLDN11 KIF1A NHP2 TSC22D4 UQCR11 TPGS2 PPP2R1A ZBTB20 MTRNR2L12 PROX1 SOX10 C6ORF1 UBE2M CALM2 PRUNE2 NKX2-2 UQCR10 ATP6V1E1 USMG5 TMEM235 KIAA1755 ELMO1 LGI3 PLD3 ITM2B MARCKSL1 CALM1 SYTL2 ENPP2 SERINC1 TLN2 OR6D1P MYRF HSPBP1 BNIP3 PIP4K2A EDF1 RPS2 SLC1A3 SNAP25 POLR2K MRPL37 MTRNR2L1 EIF1AX CNP CMTM5 ZNF536 PPIA CHP1 GLUL MORF4L2 PTPRZ1 GDE1 TMEM88B CTNNB1 CYP27A1 ARHGDIA MT-ND1 NDUFS5 PCMT1 MTATP6P1 C19ORF70 TNS1 CLDND1 HTRA1 DNAJC6 POLR2I PSMD8 NRAS MIF LINC01296 IDS GTF2H2C_2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "oligodendrocyte A",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 SPP1 CLDND1 TF MT3 MT-ND2 MT-ND4 MT-CO3 FTH1 TMEM144 GLUL ST18 TBCB NUAK1 SCD CCDC124 TUBA1A RTN4 RAPGEF5 RP11-111M22.2 EIF1AX FAM107B TPPP MAL YWHAB ACTB DHCR24 DNM3 PTGDS ATP5J HNRNPA1P40 MGST3 APLP1 FA2H ATP5F1 RHOA GLDN TUBD1 GPRC5B CRYAB C18ORF32 UBA1 PCDHB4 ERMN NDUFA13 APOD MT-CO1 OAT ANLN RPL7 ANKRD18A ZFAND5 KIF1A SYNGR1 RAB6A POLR2I AGT GTF2B SOCS3 GAPDH GNB1 PSAP SEPP1 USMG5 ACTR1A TM2D3 MT-ATP6 IFI6 EIF4A2 MBP TLE4 NIPA1 ETFB ERBB3 MAP1A DSTN SPTBN1 UHMK1 PEA15 SERPINI1 FAM131B FAM84B TUBA1B EDIL3 RPL37A ZNF536 MOBP RNF11 TGOLN2 MT-ND4L SPRYD3 TIMP2 UBB TUBB2B ATP1B1 RPS26 WIPF1 PRNP CALM1 MT-ND3 ZCCHC17 PAQR8 RPL3 NUDT21 FAIM2 VDAC3 DNER PIP4K2A NEGR1 GPR37 COPE PVRL1 PPIA MT-CO2 FRMD4B SLC1A3 EIF1 ASPA DPYSL2 ATP6V1E1 TERF2IP SCOC SYT11 MAPRE3 STUB1 RPL13A QKI HSP90AB1 NDFIP1 BNIP3 IL10RA HSP90AA1 NKX6-2 MT-CYB ZFHX4 CLU BIRC5 MT-ND1 MTND1P23\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "oligodendrocyte A",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 ZBTB20 QDPR QKI MBP ENPP2 TF FSCN1 APBB1 OLIG1 VWA1 SLC22A17 TMEM144 SCD APLP1 CNDP1 ACTB HEBP2 MOBP SPP1 DPYSL2 PAQR8 EDIL3 RTN4 CALM2 MT-CO1 TBC1D15 NR1I3 BRINP3 SRP9 PLS3 TPI1 DCTN1 ZNF536 RPS6 FKBP8 CCDC124 AK5 BEX4 TMEM160 PPP2CA FTH1 SCD5 CREB5 TUBB4A COPE SLITRK1 INSIG1 TLE4 ACTG1 SEPP1 ARL8A ABCA8 LANCL1 PIP4K2A TBCB HHIP NKX6-2 SLC1A3 RPL13A GAPDH SHC4 MAP2K2 LDHB MAG AP2S1 WBP2 PTGDS NFIA MAL NDUFA11 SLC24A2 CFL2 CLDN11 CNP JUND ROBO3 APOD MT3 SMOC1 CTC-575D19.1 TMEM117 MT-ND3 MT-ATP6 SEMA3B DNAJA1 NKAIN1 ST18 PEBP1 ANLN RPL37A MTRNR2L12 GLUL MT-ND4 FOXO1 ZBTB18 ELMO1 CPNE2 RPLP0P2 UBA52 EIF1 PVRL1 LGI3 ATP1B1 METTL7A PJA2 HSP90AA1 PPP1R14A FIGN OLIG2 PSMD12 COL4A5 ADARB2 ATP13A4 BCAS1 ARPC5L UQCRFS1 STMN1P1 UBC HSPBP1 RPL35 MEGF10 CYFIP2 CKB SERINC3 NDUFB5 CADM2 BSG MYRF PIEZO1 RAB9A ACSS1 TPRG1L FAM107B PSAP CLMN ZNF174 RPL7 PHF11 RPS3A SNCA TXN MT-CO2 RP11-111M22.2 FTL PDE1C ZFP36L2 MTRNR2L8 SNAP25 PTPRZ1 HNRNPA1P40 RPL13 OR6D1P TRIM59 RPL21 CYB5R3\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "oligodendrocyte A",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 MBP MOBP CLDND1 RPL37A APLP1 RPS15 HSP90AA1 YWHAB PAQR8 TPPP MT-CO2 TTYH2 CRYAB MAG LINC01296 TMEM144 ZBTB20 DLD CLMN SPP1 ERBB4 MEGF10 GRM3 MAP1LC3A CDK5R1 LMO4 PEX5L PLD3 CFH GPRC5B PPDPF TMEM235 MFGE8 SEMA3B TMSB4X YWHAZ SOD1 ARPP19 PTMA MT-ND2 STUB1 NDRG2 NEGR1 ACSS1 YAF2 RHOC PPP1R14A SARAF ATP1A3 HSPA8 TOMM7 PDP1 EPS15 MAST3 ARL6IP1 MT-ND4 ALCAM RPS4X PEA15 PRKACB S1PR5 MT-CO1 CD9 RELN STOM BCL6 RTN4 MRPL33 RTKN TPT1 ST18 PPP2R4 GPIHBP1 MYRF HHATL APOD CTSD EVI2A RAP1GDS1 KCNJ10 TMEM63A TMTC4 TRIM59 CLDN11 VAMP2 STMN1 ARL6IP5 GYG1 LANCL1 SLC24A2 CYC1 ZNF536 ATP1B1 EID1 SALL1 MT3 FTL SCD5 PHYHIP SHC4 FAIM2 CNDP1 ANKRD18A TBC1D15 DNAJC21 HNRNPA1P40 ZNF385D SYTL2 RAB3B GTF2H2C_2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "oligodendrocyte A",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 HHATL QKI MT-ND3 CLDND1 MT3 APLP1 SEPP1 MT-CO1 SPP1 GABARAP TF NAPB TUBA1A RTN3 CNP ST18 MT-ND1 SNAP25 CARNS1 RPS4X RPS15 RPS6 TMEM144 APOD S100A6 MBP CNDP1 PPP1R14A SKP1 YIPF3 ENPP2 ACTR10 TMSB4X RPL39 ETFB ALDOA TMEM88B ALCAM RPS27A FTH1 AURKAIP1 ST6GALNAC3 SLC24A2 COX6B1 RPL8 FIS1 MEGF10 PREPL FBXO2 RNASE1 INSIG1 MT-ND2 SPARC MRPL33 COMMD6 NFE2L1 PCMT1 ESYT1 ATP5I CRYAB FOLH1 ATP1B1 DPYSL2 LGALS1 HSP90AA1 YWHAQ LSM4 MARCKSL1 PTMA RELL1 MTRNR2L12 HSPE1 RP11-597D13.7 FTL ZFHX4 EDIL3 IDI1 DSTN SEPW1 LIMK1 DNER ATP6V0E2 COX7A2 TUBB4A NCAM2 PSMD8 KIF21A PPP2R4 SPTBN1 TMEM151A PAFAH1B2 RPS3A ANKRD18A C19ORF43 TMEM235 PPP3CA HTRA1 ACTB ANLN PRNP MAP7D1 CYB5R3 PEBP1 ARF1 RPL37A TTYH2 DPF3 SPOCK3 MAST3 COX7B FOXO1 PSAP MOBP GPR37 PRDX1 RPL35 ABCA8 UBL5 C10ORF54 S100B ZNF536 ZCCHC17 CREB5 MTUS1 GUK1 MAP1LC3A RP11-20I23.1 RPL17-C18ORF32 ATP6V0C ESCO2 RNASEK-C17ORF49 EVI2A RPL36A RPL17\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "oligodendrocyte A",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 MBP HSP90AA1 MT-ND3 MT-ND2 MT-CO3 TF MTUS1 HHIP TMEM144 MT-CO2 ACTB SLC24A2 CLDN11 CNP TLE4 ANLN RAB3B APLP1 ATP1B1 APOD GDI1 ZBTB18 ACSS1 S100B PSMB5 RAB6A SCD RPL13A TLR1 HSD17B3 FTL ARL6IP5 BCAS1 RP11-111M22.2 FAM134A NDRG2 GLUL QKI APP MT-ATP6 CDK17 PTGDS MT-ND4 ZBTB20 ERMN TBC1D15 EPS15 LHFP TMEM59L LANCL1 MTRNR2L12 RPL3 MT-CYB GAD2 TMEM14A MAP1B DYNLL1 DYNLL2 GRM3 RNASE1 OPALIN LMBRD2 AK5 CRYAB POLR2I RPL21 NFIA C1QBP MT3 PLIN3 FOXO1 BEX4 STXBP1 PADI2 YIPF3 COX5B S100A13 MTPN AGT RPS10 TMEM88B ARL6IP1 PAFAH1B2 VEGFA MT-ND5 PTGES3 NR1I3 TMEM63A GAPDH KIF1A PRUNE2 TMEM258 NEGR1 CREB5 HAPLN2 SLC6A1 CAMK2G RAB40B RCAN2 RGCC HSPA8 COX7C RPL13 SEMA3B RPL26 CLU SYPL1 CLMN HTRA1 SPP1 ACTG1 EDIL3 REPS2 BCAP31 CDH19 GPR37L1 EIF1 HHATL TTYH2 PEBP1 ST18 TRIM59 QDPR DPYSL2 TXN PGM2L1 ADAMTS1 MAPRE2 PEX5L PEG10 EIF1AX PPP3CA TMEM151A YWHAB PJA2 NCBP2-AS2 ZCCHC24 DYNLRB1 CA2 GPR37 TMSB4X CLDND1 ZNF536 MT2A APOL6 BEX1 RPS28 ARF3 TSC22D4 MAGEH1 SLC25A22 CALM1 MTATP6P1 SELM SEPP1 GABARAP ATP2B4 EIF4G2 ST6GALNAC3 ABCA8 PTMA DNM3 EMP1 GSK3A RPS15 CD63 CTNND2 CSRP1 ELMO1 BIRC5 FAM107B SEPT4 MT-CO1 NIPA1 CMTM5 SMS CFH SERF2 FAM3C SYTL2 ZNF385D\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "oligodendrocyte A",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 MBP MT-ND4 MOBP TF EDIL3 RAB3B QKI FTH1 TUBA1A ATP5I MARCKSL1 SCD ZNF365 MEGF10 RPS27A CNP CLU ARL8A TBC1D15 ZNF385D HSPE1 KIF21A MAP1A CLDND1 RPL13 PSAP EPHA6 MT-CO3 VWA5A ENSA PEBP1 RTN4 MAL ANLN NRSN2 SNRPN PAQR8 HEPACAM SPP1 SLC9A9 CNTN1 PSMC1 COL9A2 TMSB4X MT-ND2 CALM1 ABCA8 SYT1 RAB2A ATP1A2 MLLT11 ACTB MIR3916 STMN1 KCNC2 MTRNR2L1 GPM6A PJA2 FAM3C MTRNR2L12 CYBRD1 GLUL PPA1 PRKAR1A RPL21 JUND GPR37L1 RPL15 TTYH2 RP11-597D13.7 CHCHD2 MAG PLCB1 ENPP2 PTGDS HMP19 MT-ND3 CALM3 SEMA3B TUBB2B RTKN SPTBN1 HAPLN2 DYNLRB1 OR6D1P MFSD6 MT-ND1 DNAJB9 SYT11 ST18 SARAF EPB41L3 MAP1B RNASEK-C17ORF49 RPL13A MTRNR2L6 DNAJC21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "oligodendrocyte A",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 MT-ND3 QKI TUBA1A TF PDK4 MT-CO2 MT-ND2 SEPP1 HHATL BSG TSC22D4 BLOC1S1 RTN3 PAQR8 NGFR ST18 PREPL TMEM144 SPP1 MGST3 MARCKSL1 VWA1 RHOB PLIN3 AP1S2 MRPL55 STK39 PSAP TIMP2 PTPRS PCDHB10 SARAF RPL12 PPP2CB ATP6AP2 GPX4 SUB1 CHADL MEGF10 UBA52 PEA15 SYPL1 ACAT2 CLDN11 RTKN GUK1 NFE2L1 ANKRD18A SCAMP5 SPARC CTSD ELMO1 BAD CALM1 RASSF8 APOD GOLIM4 CNP APBB1 BNIP3 MTRNR2L1 CD44 MBP TMEM88B CTNNB1 PPP3CB FOS RNF11 HSP90AB1 DHCR24 MAP1B DYNC1I1 PEBP1 UBC TANC1 SCD SPTBN1 NDUFB1 CRYAB MRPL51 GPRC5B CP GPIHBP1 ETFB ADCY10P1 IQSEC1 ANGPTL4 RNASE1 S100A13 KCNJ10 ANLN PRKCQ CA2 GPR98 DPYSL2 ACTB CNDP1 HSP90AA1 SCD5 PIEZO1 PPP1CB ADSS DNAJC6 FTL SUMO2 PAFAH1B2 STXBP6 RGCC PIK3R1 RAPGEF5 PREX2 PMP2 MT-ND1 ALKBH7 ZFAND5 PKM RP11-597D13.7 MT-CO3 APP PADI2 RPL37A SHC4 SKAP2 TBCA TUBB4A ERBB3 RPL13A CLDND1 S100B SERINC1 EDIL3 ATP1B1 FRMD4B USMG5 TENM1 SEMA3B MTRNR2L6 ISCA1 MIF\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "oligodendrocyte A",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 MBP CLDND1 PSAP TMEM144 GLUL EDIL3 CNP MOBP APLP1 SNAP25 TF ST18 TMEM63A LAMTOR5 ATXN10 NDFIP2 RTN1 MYRF PRR18 DOCK10 MT-ND1 SPP1 MT-ND3 MAPRE2 MT-ND2 NPAS3 PRNP SYTL2 RAB3B RPS6 PON2 C1ORF52 JUND CAPNS1 RPL11 COX6B1 SARAF RELN ADCY10P1 MT-ATP6 COMMD6 FSCN1 DPYSL2 SPTBN1 MYEOV2 MFSD6 MT3 TSC22D4 TLE4 ATP1B1 ATP9A C11ORF31 VAMP2 DRAP1 RAB5C PRPS1 ARL6IP5 SLC25A6 GAPDH SEPP1 CLDN11 MAL MT-ND5 PSMD12 RHOB RHOA INSIG1 CSDE1 MTRNR2L8 FAM107B FBXW11 RPL23A PROX1 ZCCHC24 UQCR11 ITFG1 RAN HHIP COX6A1 RPL6 GOT2 CLIC4 POLR2L AZIN1 SLC24A2 PLD3 MAG SPARC ATP5G2 KCNMB4 RPS10 NECAB1 RPS28 PTMA FAM19A2 MTRNR2L12 SLC31A2 ITM2B SYT1 ALCAM SCD5 PTGDS GPRC5B RPL15 FRMD4B RAPGEF5 QKI ARHGDIA MORF4L1 COL4A5 ADAMTS1 TOMM20 TMSB10 ZBTB20 STMN4 RBX1 TXNIP TIMP2 NDUFB7 RPL7 OLIG1 MTRNR2L1 BCAS1 RPS5 MTUS1 FAM174A IDS C18ORF32 RPL21 RPS3A RPL17-C18ORF32 MTRNR2L6\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "oligodendrocyte A",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 TF MBP RAB3B SSTR2 POMP SPP1 PPDPF QKI S100B ATP5E IQCK TUBA1A DHCR24 EIF1 RELN ARFGAP2 PCDHGA6 ITM2B RP11-404G16.2 ALCAM PEBP1 PPIA ATP6V0E2 RBX1 GAPDH PPP1R14A ABCA8 GDA FA2H RTN4 CA11 RNASE1 RPL7P49 CDH19 SLC31A2 EPS8 CYB5R3 RPL13A PTGDS CNP NINJ2 ERBB3 FRMD4B CLDN11 TMSB4X EVI2A VAMP2 ANKRD18A DNER SPOCK3 TOMM20 TMEM235 NGFRAP1 CRYAB PSD3 MT-ND4L RPL23A PDCD5 LANCL1 GLDN CTSD TMEM63A STMN1 FTH1 MAP2K2 LINC01296 GSTT1 CORO1B ZBTB20 LGALS1 MOBP ATP5G2 DOCK10 GSK3A MTUS1 PRNP ASAP1 ERMN NECAB1 TLN2 VAMP1 MT-ND4 DPY19L1 EPB41L3 LHX6 COX7C POLR2I S100A1 PRRX1 TTYH2 ST18 HHATL ALDOA RPL21 NSF GTF2H2C_2 TBC1D15 NR1I3\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "oligodendrocyte A",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 KLC1 RPL13A TMSB4X YWHAG SPP1 CLDN11 MBP CRYAB TMEM144 SEPP1 FTH1 FSCN1 DOCK10 GPRC5B SPOCK3 TBCB ANKRD18A ATP1B1 NKAIN4 ST18 TXNIP CADM2 CD24 PPP2CB TALDO1 NCDN ASAP1 DHCR24 TUBB4A PCDHA9 EIF1 PLD5 C4ORF3 PSAP ATP2A2 SEMA3B CLTC CADM3 CLDND1 RHOB GUK1 SPATA13 TPGS2 COX14 RPL26 NAPB KCNJ10 RPL11 MT-CO2 TMEM258 PPP3CB PTPRS RANBP1 MAPRE2 MT-CO3 ACTR10 MT-CO1 SELT UHMK1 EIF4A2 NKX2-2 STMN1 MAP1A HSP90AA1 DPY30 RPL39 THYN1 RPL36A SSBP3 QKI PAQR8 CNRIP1 TIMP2 RPL37A CD59 RPS15 MTRNR2L1 ATP5B CSRP1 PPA1 PPP1CB UQCRC2 RPS5 UBE2N ATP1A1 DNAJB6 FKBP1A MOBP TMEM63A FIS1 C19ORF70 TANC1 TMEM230 TF KCNK1 PTGES3 RPL31 EDIL3 GAPDH PPP3CA RTN4 GLDN MTRNR2L6 ARFGAP2 MTRNR2L8 MTRNR2L12 GTF2H2C_2 RPS3A TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "oligodendrocyte A",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: TF MBP CLDND1 MT-CO3 QKI MOBP PLP1 ZBTB20 CA2 APLP1 SPP1 NKX6-2 PSD3 GPRC5B MT-ND4 PDE1C CADM2 TMEM144 EVI2A GAPDH ESCO2 NDUFB7 SOX2 TENM3 SERF2 YWHAZ EFR3A STMN4 BCAS1 MYL6 SEPP1 MTRNR2L1 ERMN KIF21A PIP4K2A CALM1 S100B MMP24-AS1 PREPL OPALIN GPR37 ANKRD18A UQCRQ CSDE1 MT-CO2 MT-ND3 ALCAM TM6SF1 RP11-111M22.2 PPIF RPL8 ELMO1 EDIL3 DSTN SCD SIRPA LGI3 JUND PCBP1 MYRF SCML2 ARPC4 PIEZO2 LAMA2 COX5B KIFAP3 OAZ1 OXR1 APP ERBB3 PAQR8 CAMK2G UBB ST18 ATXN10 EPS8 TTYH2 COX4I1 MT-CO1 NCKAP5 NCAM2 ZNF536 DYNLRB1 TRIM59 ARFGAP2 MT-ND2 MTND2P28 ATP5A1 NR1I3 MTRNR2L6 RAB3B SYTL2 ZNF385D DNAJC21 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "oligodendrocyte A",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 MOBP MBP TMEM144 RAB3B ERBB3 TRIM59 RTN4 MT-ND4 PTGDS GPR37 ZBTB20 TF ZNF385D SEMA3B CARNS1 PDE1C HSP90AA1 RAD23B SPOCK3 ATP5A1 RAB3IP CNP MTRNR2L1 VAPB CMTM5 PEPD PEX5L PTMA SQLE MAP1A CRYAB RPL37A RAB6A CAMK2D FASN SLC6A1 ST18 MT-CO2 SEPP1 SEC61G ELMO1 APLP1 TMEM88B APOD NDUFB1 RAB40B TMTC4 ENC1 SHC4 CKB AZIN1 ENPP2 TEX2 CLTA EFR3A KCNAB2 NDUFA13 ACTB TMSB4X PTN CALM1 VSNL1 TALDO1 CLDN11 GSK3A PRKACB TXNIP GPIHBP1 QKI NFIA MYL6 C11ORF31 RP11-111M22.2 PCDHA4 ABCA8 PRKCB SNAP25 UBA1 RAB2A RPL23A CYC1 VWA1 BIRC5 PGRMC1 HHIP FTL CLMN CTNNA3 PPP3CA FRMD4B ROBO3 ERMN TMEM63A DPYSL2 RTKN RAB7A ATP5G1 COX6A1 FA2H EID1 PLS3 RPS26 RHOB NARS SPCS2 QDPR MTRNR2L6 D4S234E\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "oligodendrocyte A",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 HHIP TMEM144 MBP ACTB CRYAB SPP1 TF RBX1 HSPA2 TXNIP ATP5G3 SEPT4 MT-CO2 MT-ATP6 RPL39 PTMA PPA1 THBS2 NECAB1 CLDND1 HHATL PGK1 TLE4 CNDP1 ARL8A CRKL GPX4 LRRC69 APLP1 GLUL PPP2CB MOBP TPPP GPRC5B NPAS3 EIF1 DOCK10 LRP4 HMGCR RNASE1 ATP5I RAPGEF5 APBB1 MT-CYB LDOC1L GAPDH APP MARCKSL1 YWHAG VAMP2 ANLN BSG FSCN1 DYNLRB1 MTPN HINT1 MT-CO1 PET100 MT-CO3 SLC39A10 SEMA3B CADM2 MT-ND5 CLIC4 LMBRD2 NDUFA1 FIGN SYTL2 COX7A2 ELMO1 TMEM88B MYRF DNM3 SLC9A3R1 ITM2B AP2M1 ZCCHC24 NCKAP5 PTRF PRNP TMEM123 BIRC5 EDIL3 WASL TSC22D4 ZDHHC12 ARFGAP2 ALKBH7 MORF4L2 PLIN3 QDPR RAB3B EPB41L3 NKX6-2 RPL37A AIF1L PPP1R14A ATP6V0E2 SLC6A1 PEX5L RTN4 HPN ERBB4 RPL21 CDH13 ZBTB20 NTNG2 CBX6 SPOCK1 FTH1 ANKRD18A SCD HEPACAM CPNE2 CLDN11 CDH8 RAB7A CLDND2 FOLH1 ENO1 TMA7 ADSS GPR37 SLC24A2 MT-ND1 MTND1P23 SUCLA2 ESCO2 PTCHD4 PLEKHD1 HNRNPA1P40\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "oligodendrocyte A",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 TF MT-ND2 RAB3B PEBP1 TMEM144 SCD RTN4 RP11-111M22.2 MAP1B GNAQ ENPP2 DNAJC21 MT-CO2 CLDND1 CNP MOBP ITM2B MTND2P28 SUMO2 PRNP SERINC3 PEX5L RPL21 ATP1B1 PDK4 NDUFB10 MT-ND1 MT-ATP6 MT-ND4 NDUFB8 GRM3 OAT PTGDS SEPP1 QKI ZNF385D HSPA2 WASL PMP2 SPARC CBX6 MARCKSL1 SLC1A2 ASPA ZFHX4 CDK17 REPS2 CAMK2G RPS6 TMEM235 RPL13A MGST3 SKP1 APLP2 ESCO2 SLC14A1 CFH TUBA1A MBP KLC1 MAP1A RPL32 NCKAP5 CD44 CRYAB FTH1 DPYSL2 CTSD HINT1 HHATL PPDPF SQLE EVI2A S100B SERF2 MT3 PCDHGA5 FAM127A THBS2 PIEZO2 PIP4K2A RAPGEF5 KAL1 ST18 MT-ND3 TM2D3 TOLLIP SYT11 NFE2L1 MT-ND5 MTRNR2L1 MT-CO3 CTC-575D19.1 PAQR8 NKX6-2 PBX3 LAMTOR5 DNER TMSB10 ZFAND5 ANLN UQCR11 SEPW1 ACTB YWHAB C18ORF32 BIRC5 ATP6V0B EDF1 MTATP6P1 ELMO1 PSMB5 PPP1R14A GPR37 TMA7 EDIL3 ARL2BP SPP1 DNM3 EID1 CYB5R3 CMTM5 ERBB3 RAB40B PVRL1 PCDH17 TMEM151A PCSK5 MT-CYB MTRNR2L12 TNS1 TUBB4A ASAP2 PNMAL1 PJA2 ZBTB20 MYRF RANBP1 NDUFB7 AC244489.1 RNASEK-C17ORF49 HNRNPA1P40 SYTL2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "oligodendrocyte A",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 MOBP MT-CO2 CRYAB PTMA EDIL3 CLDN11 HSPA2 DPYSL2 MT-ND4 CALM2 MT-ATP6 TLE4 ACTB GPIHBP1 DYNLL1 GPRC5B CLDND1 ATP1B1 ATP5I HSP90AA1 TMEM144 RPL7 QKI CNDP1 SNAP25 MBP PDE1C PDK4 TSC22D4 MT-CO3 RPL13 MT-ND3 SEPW1 HNRNPA1P40 TF SERPINI1 HSP90AB1 TMTC4 PEA15 ATP6V0B MEGF10 MRPL51 MTCH1 RPL18A RAPGEF5 LLGL2 RPL37A OST4 B3GALT2 PTGES3 CHADL MTRNR2L12 APLP1 MTUS1 TEX2 PHF11 PHPT1 DNAJC5 AZGP1 CRKL EIF1AX NUAK1 MT-CYB GSK3A EPHX2 YWHAQ DNM3 COX6A1 MORF4L1 CALM3 COX8A ZFAND5 BCL6 C18ORF32 UBC PIEZO2 UBB PLIN3 PRKACB ATP5B ST6GALNAC3 SPOCK3 SEMA3B BIRC5 HHIP SLC1A3 ZFP36 MT-ND1 ENPP2 GRM3 HSD17B3 CD99L2 SLC25A5 ATP5J RPS15 RPL35 CTNNB1 MT-ND2 ZCCHC24 PEX5L MT3 CREB5 PDE1A MAL GPR37 SERF2 FTH1 APP TMEM147 MTRNR2L8 MTATP6P1 ATP6V0D1 SEPT4 NDRG2 MGST3 RNASE1 GSTP1 KCNMB4 OLIG1 PTGDS TMEM88B CDKN2AIPNL ST18 FKBP4 LDOC1L LSM4 ZBTB20 QDPR PIK3R1 MAPRE2 RPL32 MTRNR2L1 RPL26 RNF152 CDC42SE2 NKX2-2 DHCR24 PROX1 ATP1A3 SYTL2 RAB3B TUBB ZNF385D TBC1D15 GTF2H2C_2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "oligodendrocyte A",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 CALM2 ANLN PEA15 TF RNASE1 MBP SPP1 ERBB3 RAPGEF5 CRYAB SALL1 SCD OCIAD1 TUBB2B TUBA1A FIS1 MT-ND4 TUBB4A QKI EIF1 PTGDS APLP1 MRPL20 ATP1B1 JUND ACTB FOLH1 TMA7 ATP6V1A CMTM5 RPS5 SIGIRR APOD COL4A5 RPS19BP1 MARCKS HSP90AA1 FKBP1A PSD3 CFL1 GUK1 NKX6-2 CLDND1 BCAS1 FA2H SLC25A4 PTMA SNRPE CREB5 PPP1R14A DRAP1 GOT1 LANCL1 DYNC1I1 FTL TMEM88B RHOB GLUL EIF1AX DHCR24 PDE1C TMEM144 RAB3B RP11-111M22.2 MAG CFH LRRC59 PEX5L FAM131B AES VAMP2 COX7B COX8A ATP5I SARAF HHATL MAGEH1 SLC24A2 PEBP1 ZBTB20 ISCU WBP2 PRKACB MTRNR2L1 CDK17 C16ORF13 PHF11 CNDP1 PIN1 ATP5J HSPE1 ARL8B MAP1B GRM3 HSPA8 MT-ND3 CDK5 SAP18 SPOCK3 MEGF10 VCAN MT-ND2 SYTL2 EPB41L3 TMEM123 PDK4 MAPK1 NAP1L2 DPYSL2 MGST3 ARPP19 KIF1A UQCRQ ELMO1 TANC1 FTH1 POLR2L ITM2B CYB5R3 ISOC1 SCN2B MTRNR2L6 PRKAR1A NGFRAP1 CALM1 RPL35 PPP2CA NFE2L1 FAM219A COX4I1 TPPP HNRNPA1P40 PSMB3 GABARAP KLC1 MIF RPS10 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "oligodendrocyte A",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 PTMA PTGDS TF ZBTB20 CLDND1 CRYAB ATP5E PPP1R14A MT-ND4 LRP4 SERINC1 OLIG1 MOBP CADM2 RAB3B DPYSL2 SPOCK3 SCD TMEM144 TMCC3 SPTBN1 RTN4 MT-CO2 EIF4A2 LANCL1 SLC24A2 FA2H NDUFA13 CTC-575D19.1 PHYHIPL PEX5L QDPR GLUL ARL6IP5 APLP1 CD63 TMEM88B MT-CO1 SEPT4 QKI PDE1C RP11-597D13.7 MT-ND1 CLDN11 FAIM2 MBP HHIP FAM134A RPS6 ARHGAP35 SAMM50 FAM107B ELMO1 TMEM63A C12ORF57 VAPB SCD5 DLC1 ACTB CNP HMGB1P35 TUBA1A FIGN SNAP25 PLIN3 TPT1 GPRC5B TXN EXTL2 NCOA4 UBQLN2 ACSS1 PRKACB RPL35 WSCD1 MAST3 NTNG2 INSIG1 CXXC4 MT-ND3 HTRA1 MRPL20 TMEM151A RCAN2 RPL7 DYNLL1 HSPE1 RPL10A MT-CYB DNAJB6 GUK1 KIF1A ATP6AP2 RHOB TMEM65 TUBA1B PCDHB4 OLA1 AK5 PPDPF CDC42SE2 RPS3AP12 SRP9 MAG ATRN MTRNR2L1 MTRNR2L12 PFN2 HHATL TIMP2 ZCCHC24 AKAP12 NHP2L1 ITM2B RPS19BP1 HSPA2 UBA52 RPS27A FTL RP11-111M22.2 SPP1 MZT1 STMN1 METTL18 RPL15 KLC1 PPAP2B FTH1 PIP4K2A ATP1B1 CTSD TRIM59 NDUFAF3 PFDN1 LRP1B PAQR8 NDRG3 VAMP2 CD9 CLMN APOD LDOC1 GTF3A AIF1L CA2 CNDP1 MTRNR2L6 C11ORF31 RPL13A PCDHGA5 AC244489.1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "oligodendrocyte A",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 MT-CO3 MBP MTRNR2L1 MT-CO2 QKI RTN4 MTRNR2L12 MT-CO1 MT-ATP6 CDC42SE2 CLDND1 PEBP1 MT-ND1 ARL8A PTGDS SDF2L1 GPRC5B RPS12 APP MAG DNER RPS15 CD9 RPL18A EDIL3 ACTB SSBP3 MT-ND2 SNAP25 MTRNR2L6 SCN4B ZCCHC24 LRP4 SCD5 FSCN1 EID1 ATP5E SOX2 ATRN STMN1P1 ZBTB20 DOCK10 COX5B PSAP TBCB ELAVL4 RPS28 NR1I3 NFIA DPYSL2 SLC22A17 KIAA1755 DCTN1 PRKAR1B ATP6AP1 C19ORF53 CREB5 NDUFAF3 RAB40B ENC1 KIF21A BTBD10 FAIM2 ARL6IP5 CLDN11 YWHAG RP11-404G16.2 MARCKSL1 SERF2 MAGEH1 TLE4 MYRF MRFAP1 GPX4 RPL38 SERINC1 WSB2 ASPA CYCS CALM2 PSMD12 SEPP1 CST3 GLUL NAPA NRF1 MTATP6P1 MTUS1 APBB1 PPP2CA OST4 TMEM123 RPL37A HOMER3 PPP1R14A PRDX3 UBQLN2 PTMA SLC24A2 MAP1A TMEM144 CPNE2 CLTA PAQR8 TSC22D4 REEP5 PPP1CB NDRG2 ACTG1 SPOCK3 JOSD2 HTR2A RPL23A COL9A2 MYO10 GNB1 CLU CFL1 NDUFB3 RASGRF1 ERMN OPCML CALM1 SNX3 GRIN2A TMTC4 SUSD4 RORB GOLIM4 TMEM235 NPTXR SLC1A3 PPP3CA CTBP1 MAP1B RPL26 FASN MTRNR2L8 EPHA6 VAMP2 NDUFA1 FTL SPRYD3 ERBB3 APLP1 CKB HSP90AA1 PKM FRMD4B MT-ND4 HHIP CNDP1 FIS1 SYN2 GDI1 RTN3 CNP CLSTN1 TSPYL1 UBC PGRMC1 ATP6V0C TBC1D15 IDS BIRC5 PGM2L1 RP11-20I23.1 DNAJC21 MBOAT7 TUBB\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "oligodendrocyte A",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 TF S100B MBP SEPP1 NDUFAF2 ANKRD18A ZBTB20 SPP1 EDIL3 NUAK1 BIRC5 FTL TMSB4X MAPRE2 SYTL2 RAB3B SKP1 ACTG1 RPL13 TMEM63A PTGDS PPP1R14A FTH1 DNM3 ANLN RAPGEF5 RAB4A ACTB ATP5I DPYSL2 ST18 CRYAB DPY19L1 MT3 EIF1 COX4I1 KLC1 HSPA8 SHC4 FAM229A PCBP1 PEBP1 PELI2 YBX3 S100A6 CLDN11 PDE1C SLC24A2 MAP4 CHMP5 RCAN2 TOMM20 CDC42SE2 MARCKSL1 SLC22A17 SNAP91 OAZ1 PJA2 RPL21 TUBA1A UCHL1 SYT11 PRDX1 NDUFA5 FIS1 ATP6AP2 LAMTOR5 CTSD TNS1 LRRC3 OCIAD1 TUBB2B MAP1B MIR6723 MT-CO1 PIP4K2A TMTC4 MAP2K2 RBP7 SRP9 ETFB EID1 HHATL PPP2CB KIF3C SNX22 NDFIP1 GPR37 CP COL4A5 CALM2 QKI BCAS1 HSP90AA1 RPL15 ATP2A2 RPS12 VWC2L NDUFB2 C18ORF21 ADORA1 TMCC3 HSPE1 NPTXR NUDT21 MT-ND2 NFE2L1 RASGRF1 MORF4L1 AIF1L PRNP NKX2-2 SYPL1 IDS RP11-111M22.2 PADI2 PCDHGA5 SARAF APLP1 SCD GLDN PLIN3 PLEKHG1 MT-CYB COX5B NDUFB4 MAL PSD3 PSAP WASF1 JOSD2 CLMN MOBP TERF2IP SPOCK1 MAF CALM1 CLDND1 PRKAR1A TLE4 S100A1 NHP2 NGFRAP1 NUPR1L NDUFV1 EIF5A2 PDGFRB SALL1 PREPL ARHGAP35 VDAC3 SCD5 FAIM2 POLR2L ATP5F1 ATP6V0E2 PEA15 MAG TSC22D4 RPS28 RPL32 WARS LGALS1 ITFG1 GPX4 MIF CD9 CORO1B RPL7 RP11-20I23.1 ATP6V0C DNAJC21 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "oligodendrocyte A",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 MBP TMEM144 TF ZCCHC24 PTMA SEPW1 CRYAB CYP27A1 ATP6V1E1 SPOCK3 RTN4 ST18 SEPT4 PVRL1 TMSB4X EPB41L3 EPS8 MSMO1 INSIG1 DPYSL2 SEPP1 PRKACB RABAC1 S100B RPS5 ACTB LRP2 EIF1AX NARS RPS26 RTN3 CHN1 SLC24A2 ABCA8 TCEB2 NDUFB8 TUBB2B GABARAP CLTC PPP2CB FBXO2 SLC22A17 PIP4K2A CLDN11 PTRF COX6A1 STUB1 YWHAB HSP90AA1 RPS15 RPL39 LMBRD2 PSMC5 MCM5 FTH1 GAPDH RPS28 MTPN MAP1LC3A ATP5E JUND CLDND1 TSC22D4 ATP9A TIMP2 PEBP1 PROX1 PEG10 RPL35 HSPA2 RPL31 MAGED2 PTGES3 CHCHD2 CARNS1 ALCAM BCAS1 NDUFA1 MARCKSL1 KIF1A CLSTN1 FIS1 RPL37A MORF4L1 SPTBN1 MT3 SRP14 S100A13 NHP2 TPD52 MT-CO2 AC011043.1 AK5 UBE2M SPOCK1 ZBTB20 APOD NDUFA13 MAG RAPGEF5 GLUL EDIL3 DYNLL1 RAB6A SLC31A2 CTC-575D19.1 MAP1B THBS2 EVI2A ASPA PTGDS MOBP EIF4A2 RAB40B TMEM63A BLOC1S1 EID1 ACAT2 PEA15 STK39 RPS10 PGK1 RPL21 IDS RAB3B ZNF385D SYTL2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "oligodendrocyte A",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 MT-ND3 TMEM144 SCD MT-CYB MBP NFIA CLDND1 MT-ND4 SPOCK1 MOBP RPL3 TF OR6D1P SERF2 COX4I1 RP11-111M22.2 MT-CO3 PIP4K2A SLC22A17 MTRNR2L1 SPOCK3 ERBB3 MT-ATP6 PRKACB RPS26 COL4A5 CNP SPP1 SOX2 ITM2B CALM1 PAQR8 PTGDS SLC24A2 SEPT4 PSAP CREB5 RCAN3 C12ORF49 ZBTB20 PCMT1 ATP1B1 SNRPN RBX1 SMOC1 FTL POLR2J RP11-597D13.7 RPL23A RPS2 PRKCB ABCA8 PPP2CA EPB41L3 PTN PSMA7 MT-CO2 PEPD VWA1 FTH1 APLP1 ZFHX4 HINT1 RASSF8 SGCD SNX3 MAP2K1 DYNLL1 THBS2 RPL13 FIGN FAIM2 AGT ATP2A2 MAP1B GPRC5B C1D ATOX1 RPS10 CA2 TXNIP GRM3 MAG MTRNR2L12 OLIG1 SEPP1 SQLE SPARC TMEM123 IFI16 CTNNA3 NAT8L TTYH2 GLDN YIPF3 QKI PAFAH1B2 PRNP FA2H DNER EPS15 CTNND2 MORF4L2 SEPW1 NARS APP DNM3 HSP90AB1 NACC2 BRK1 PTMA PDLIM5 CD63 AP2B1 BCAS1 EIF1 TMEM258 RPL26 EDIL3 CLDN11 PPP1R14A AK5 RTKN POLR2L QDPR CLMN PDE1C UCHL1 PPP3CA MTRNR2L6 PLEKHD1 PPIA AC244489.1 TBC1D15 DNAJC21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "oligodendrocyte A",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 CLDND1 MBP RPL13A TRIM59 HNRNPA1P40 CTSD GPR37 RP11-111M22.2 ANLN RAB3B TF GLUL PHB PSD3 SYT11 ENPP2 CD9 MT-ATP6 SPP1 MT-CO2 MOBP ATP5I CFH DPYSL2 ATP5J ZBTB20 ABCA8 PRUNE2 TUBA1A FIS1 OCIAD1 PIK3R1 ERBB3 QKI SAMM50 HSP90AB1 RPL3 NDUFB7 SCD NDUFB1 ATP5B RPL11 JUND MAL RTKN RTN3 KIAA1755 APLF NFIA ATP6V0B STAG3L5P RGCC BLOC1S1 CYB5R3 FTH1 YWHAZ ALKBH7 AP1S1 OLIG1 FKBP4 PCDHA10 CREB5 TMCC3 GRPEL1 RPL35 SKP1 CLSTN2 COPS7A UQCR11 KIF1A LDOC1 ACTR1A UBE2D2 RPS10 HSP90AA1 PFN1 APP TSC22D4 CLMN TTYH2 TMEM144 SEPP1 MT-ND1 NACC2 RPS27A UBA52 BCAS1 SLC24A2 COX6C ST18 RTN4 HTRA1 CLDN11 FAM96B FOS MTUS1 CNDP1 TWF1P1 RPL21 SCD5 ATP5E PDE1C MT-CO1 UQCRB TBC1D15 PCDH17 ATP1B1 RAPGEF5 CA2 CARNS1 RPS6 MT-ND3 UBC ANGPTL2 SPOCK1 RPL18A ASPA CFL2 APOLD1 AZGP1 CRYAB SNAP25 IDS PTCHD4\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "oligodendrocyte A",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 MT-ND3 MBP MT-ND2 DNAJC21 SCD RPS27A APLP1 MT-ND4 RTN4 ANKRD18A SYTL2 RAB3B CYB5R3 CLDND1 RAB6A MT-CO1 QKI EDIL3 MT-ATP6 TF FTH1 NACC2 RP11-597D13.7 MT-CYB DHCR24 CRYAB SNX3 ERBB3 EIF1AX TMEM144 PEX5L DOCK10 MT-CO3 DNAJC6 PLIN3 TBC1D15 TBCB APOD MORF4L1 CCDC85B SPP1 TUBB4A YWHAB CD63 HHATL RPS5 CREB5 MT-ND4L AP2B1 RPL31 ITM2B BLOC1S1 OPCML SPARC CAPZA2 PTGDS AZGP1 C1ORF105 LANCL1 NUAK1 C18ORF32 PTMA SLC22A17 CNDP1 GNAQ SLC39A10 TTYH2 RHOB SKP1 NFIA TSC22D4 PDE1C TOMM20 RAP2A PROX1 ELMO1 LINC00116 PPDPF CHADL SEMA3B RAB7A CHCHD2 CLDN11 CFL2 HEPACAM PPP1R14A CALM1 GPR37 TMEM63A NDRG2 FSTL5 MFSD6 ATP5G3 APBB1 UQCRB CLIP2 MTRNR2L1 MTCH1 DPYSL2 S100B THBS2 SPTBN1 MRPL20 MFSD2A ATP6AP2 KCNJ10 SPATA13 MOBP TPPP GPX4 NCAM2 MTATP6P1 ZNF536 SEMA5A QDPR SPCS2 ARL8B PSAP MTUS1 FAM107B APOLD1 HEG1 LGI3 SPOCK3 MAP1B SARAF GUK1 SLC24A2 SOD1 CLMN ENPP2 JUNB TUBA1A SH3BGRL3 CNP GLUL PRUNE2 PCMT1 HSPA4 PPIA OAT EID1 VPS35 NDUFB10 HSP90AA1 RP11-111M22.2 UROS MT-ND1 MTRNR2L6 PCDHA10 CFH MIF NR1I3\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "oligodendrocyte A",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 MBP TF PTMA SEPP1 NECAB1 CALM2 HHATL QKI DHCR24 HSP90AA1 MARCKSL1 RPL26 STMN1 CNP MOBP BCAS1 PEBP1 PTGDS COL4A5 FOLH1 COX6A1 TMEM144 S100B SCD GLUL RAPGEF5 MTCH1 GPR37 TGOLN2 SPP1 GLDN PRNP ITGB5 ACTB GPX4 APP CCDC25 TBCB NHP2 KIF1A SPARC SPOCK3 STMN2 PCDH17 CHCHD2 LDOC1 NDUFA2 RASSF8 OLIG1 PAQR8 CFL2 RPL15 MT-ND3 CRYAB PRUNE2 EGFR RPL38 TMEM63A TKT RHOB TSC22D1 CREB5 ACTG1 JOSD2 OCIAD1 MT3 ANKRD18A MAPRE2 RTN4 NDUFB2 DOCK10 UQCRB GNAQ MFGE8 PDE1C ETFB C20ORF24 UBC WASF1 IQSEC1 KIF21A PEA15 RPS6 FTL PGRMC1 SKP1 POLR2I ALDOC GABARAPL2 CLPTM1 ADARB2 B3GNT1 APOD EIF1 PLIN3 AP2M1 CLDND2 ERBB3 LANCL1 TTYH2 PRTG C7ORF50 MAPK1 RPS28 MTRNR2L1 RABAC1 OPA1 ATP2A2 CSRP1 MSMO1 LAMA4 FKBP8 PDE1A PPAP2B BIRC5 MT-ATP6 THEMIS2 SPTBN1 RPL36A VAMP2 APLP1 PFDN1 CLMN ELMO1 TPD52 MAPRE3 TM2D3 CLDND1 TUBB4A ITM2B PPP2CA SPOCK1 ATP5I MT-ND4 NDUFA11 MZT2B TMEM88B DYNC1I1 TRIM59 GABARAP ATP6V0C RP11-20I23.1 SYTL2 ZNF385D MIF GTF2H2C_2 RAB3B\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "oligodendrocyte A",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 MT-ND4 MT-ND3 RAB3B MT-CO2 TMEM144 CLDND1 MBP SPP1 QKI MT-CO1 FRMD4B HHATL MOBP TXNIP APLP1 GAPDH ACTB MTRNR2L12 ZBTB20 TBC1D15 TF TTYH2 SLC24A2 GPRC5B DNAJB6 PFN2 OAT HSP90AB1 CLU CNP CHMP4B RTN4 RPL21 ETFB APP SCD5 PTMA ST18 MT-ND1 CALM2 FTL TUBA1A SERINC1 ACTG1 PIP4K2A PPA1 THY1 EDIL3 MTCH1 MT-ATP6 PEX5L RTN3 MT-CYB B2M NAPB HSP90AA1 EIF1 TKT PRKAR1A TUBB4A ZNF385D RPS15 PREPL UROS NAA38 ARL8A HTRA1 CLMN NDUFA5 MT-ND2 CORO2B SARAF SPOCK1 CFL2 RAB2A PDE1C CLIP3 DNER ZFHX4 SHC4 YWHAG RP11-597D13.7 MT-CO3 GPIHBP1 MTUS1 PRKACB MYRF COL4A5 STMN1 LANCL1 BEX1 ITFG1 SEPP1 PTGDS PJA2 SKP1 DLD PGAM1 VPS35 HEPH PPAPDC1A COX6B1 ITM2B APOLD1 ZCCHC24 NKX6-2 MTX3 PLIN3 DPYSL2 SOX10 GUK1 APOD SYNJ1 COX5B SEZ6L2 ATP6AP2 GDE1 AZGP1 FA2H NDUFA13 PPM1A CSRP1 ARPP19 ABCA8 AP1S2 GLUL LRRC69 TLE4 C12ORF49 ARF1 NFIA RPS27A CTSD POLR2L WDR47 ELMO1 RASSF8 ATP1B1 TMEM141 CALM1 ATP6V1E1 RASGEF1B UBQLN2 SNRPN NDUFC2 RPS12 AIF1L SCD NDUFB7 TLN2 EPS15 SMIM13 MTRNR2L8 MT-ND5 CRYAB RSL24D1 PGK1 PRUNE2 FAM107B SEMA3C RELL1 PPIH TBCB MAP7D1 MBOAT7 PPDPF PAFAH1B2 TRIM59 IDS ESCO2 SPCS2 RPS26 RPL36A ATP1A1 DNAJC21 HNRNPA1P40\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "oligodendrocyte A",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RTN1 SYT1 CLU CALM1 DPYSL2 SNAP25 RTN3 PRNP CHN1 ENC1 PTGDS SPARCL1 MT-ND4 ATP1B1 ITM2B PSD3 ARPP19 NPTN DNAJA1 GLUL SARAF PLP1 HAPLN4 TMEM59L PEA15 ATP2B2 MT-CO1 MAP1B TUBA1A FTH1 MT-ND2 TUBA1B RPL11 YWHAB SCN3B MARCKS HSP90AB1 NDRG2 SEPW1 MAPK1 SYNPO C14ORF2 NCAM2 CST3 CPE TUBB4A FBXL16 ACTB MAP4 MAP2K1 GPM6A MT-CO2 PRKACB FAM127A EIF4A2 NAPB FTL COL5A3 NDFIP1 FAIM2 YWHAG CSDE1 FGFR3 ATRN NDRG4 MT-CO3 PGAM1 SLC12A5 CLSTN1 PRKAR1B CALM2 VSNL1 PACSIN1 GNB1 LPPR4 TPI1 ATP6AP1 FXYD6 CKB ATP1A1 RPS27A PSAP MT-CYB ST18 GABRA1 MTRNR2L1 AP1S1 PNMAL2 EIF1AX RPL35 ZCCHC17 MTRNR2L8 RAB3C KCNA2 PTMA MZT1 PGM2L1 TMEM88B CHL1 AP2M1 EPHB6 TRIL SCOC NREP NCALD ARPC4 ATP6V0C PPA1 ATP5F1 SYT13 SLC39A10 ACTR10 SCG2 LAMP5 ATP6V1A RASGRF1 THY1 SLC7A1 GPR98 MBP PPP3CA CLPTM1 RAP1GDS1 NDUFV1 NDFIP2 CD99L2 ZFAND5 COX6A1 CDKN2AIPNL AK5 RPL37A KCNK1 ATG101 LDHB GLDN COX7A2 RP11-20I23.1 CLIP2 MYRF TESPA1 HSP90AA1 TSPYL1 OXR1 SLC17A7 HEPN1 UCHL1 NDUFB2 MTPN CDC42SE2 RPL41 KCNV1 ELAVL4 MFGE8 ACLY ARL6IP1 BSG DUSP6 DCTN1 ATP1A3 VAPB PLS3 FIS1 UQCRQ SYT11 DKK3 LMO4 UBL5 ATP5A1 STMN3 SYNJ1 ATP2A2 SLC22A17 ALDH1L1 PRDX1 YWHAZ GABARAPL2 PTK2B UQCRH ARL6IP5 MRFAP1 PKM RSL24D1 ZNF365 C19ORF53 PRUNE2 SLC1A2 ARHGAP35 PPP2R1A EPHB1 EPS15 NCDN SULT4A1 PGK1 PPP1R14A KLHL5 ENO2 BIRC5 TPPP COPRS RASGRP1 NEGR1 SEPP1 VSTM2L PDP1 ATP1A2 NAT8L ITM2C TLE4 ATXN10 CD63 ATP5E JOSD2 ANAPC11 PEBP1 FAT3 DNAJC6 PIK3R1 NDUFA1 PJA2 PPP3R1 FSCN1 MTND1P23 MT-ND1 MTRNR2L12 RGS4 VIM RPL15 PAFAH1B2 DYNLL1 TRMT112 OLFM2 TSPAN7 RTN4 WDR47 ITFG1 STX1B TOLLIP MRPL52 PHYHIP CLIC4 BAI2 HINT1 CACNB1 GRIN2A SLC1A3 GUK1 PCDH8 UBE2V2 SLC30A3 RPL32 TUBB2A PPP3CB GPX4 COPS8 HHATL COL6A1 KIF5A MEGF10 HSPBP1 LDB2 KCNMB4 SLC25A4 KLC1 PEPD UQCRB PCMT1 TMSB10 APLP1 SV2B CREG2 AQP4 S100B ANXA7 NSF ACSS1 LINC01314 GNAQ SNRPN LINGO1 MTRNR2L6 RPS12 GABARAP RNASEK-C17ORF49 TUBB3 MIF TUBB HNRNPA1P40 RAB3B SYTL2 GTF2H2C_2 PCDHAC1 PCDHA9 PCDHA10 PCDHA4\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "oligodendrocyte C",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MT-CO1 MT-CO2 MT-ATP6 MT-ND3 MT-CYB MT-ND4 MT-ND1 MT-ND2 CHN1 MTATP6P1 CKB PLP1 MTRNR2L12 ENC1 ATP1B1 SSBP3 EIF4A2 SLC1A2 CLU CALM3 CADM2 OLFM1 VAMP2 ZBTB18 ATP9A ARPP19 MTRNR2L1 KIF1A ENPP2 LMO4 DPYSL2 PNMA2 ACTG1 PHYHIP CSDE1 TUBA1B NPTX1 RTN1 CLDND1 RPL41 SPTBN1 GJA1 NAT8L RFK WASL NGFRAP1 TMEM59L HSP90AA1 RPL38 CLSTN1 CTSD OXR1 SCN3B MLLT11 CSRP1 PTGDS ARL6IP1 BEX1 FTH1 SLC17A6 PSAP SLC24A2 CAP2 YWHAH RPH3A PITHD1 TPI1 FGFR3 PPIA CALM1 PTK2B SCOC KCNA2 SPOCK1 NRGN TMSB4X MT-ND5 JUND MTRNR2L6 FKBP8 PRKAR1B SNAP25 CNTN1 OCIAD1 COL5A3 ZFAND5 TCEAL2 TP53I3 NEFL IDS TF PPP2R2C RPL12 CAPNS1 LANCL1 ATP13A4 SYT1 HSPBP1 DIRAS1 QKI RAB31 PTPRZ1 TTYH2 UBC FIS1 GABRA1 CLMN LINC00116 PRKACB FBXL15 UBA1 SYT11 PPP3R1 VAMP5 CNP STK39 RPL11 PTMA BSN SNX10 C1ORF115 ZBTB20 ERBB3 SCN1A AP2B1 VSTM2A PDE9A CYCS WDR47 PIP5K1B FAT3 SLC25A11 COX7A2L TESPA1 IPCEF1 CARNS1 STX1B NCALD DHCR24 ITFG1 TPRG1L RPL37A TMEM88B NDRG2 SYNJ1 GUK1 YWHAG PLCB1 PEBP1 TMX4 CPE GLDN MGST3 HSP90AB1 RPL35 LGI3 GOT2 IGSF21 WASF1 CEND1 PLEKHH2 RPL26 MTUS1 MARCKSL1 KLC1 CAB39 TMTC4 GPX4 UQCR10 EVI2A ISCU HHATL GDI1 OPRM1 GHITM ADCYAP1 NINJ1 SEPP1 MTCH1 SYNPO MAP1LC3B HPSE2 TUBA1A RTN3 ALDH5A1 KIF3C BAALC TSC22D1 UBE2QL1 MTPN SEPW1 LINGO1 ATP6V0E2 SPCS2 MOBP GABARAPL1 C12ORF49 GPR6 EIF4G2 UHMK1 NECAB1 RPL21 BEX2 SEMA3B CDK5R1 CFL1 COL9A3 CERS6 ACTB CREG2 TMOD2 ENSA SOX2 SV2B MPC2 OAZ1 NGRN RHBDD2 CDK5R2 ACSS1 BIRC5 TCEA2 PFDN4 CHMP5 SLC6A1 CDKN2D SLC9A6 NPTXR SCAMP5 IQSEC1 MRPL51 DYNC1I1 PITPNA SERPINI1 SLC17A7 SNCB NKX6-2 COA3 PCDHB2 SNRPN MTRNR2L8 RGS12 SEPT4 FBXO2 NUDT21 PDP1 TUBB2A CDHR1 MORF4L1 UQCRH RPL13A WARS STMN2 CA11 CXXC4 ATP6AP1 BASP1 PLEKHG3 TUBB2B TSC22D4 PPP2CB RPS28 CMAS PREPL DOCK10 BCAP31 RORB ACTR6 RPS4X PPP3CA STUB1 MAP1A RCAN2 CPLX2 GPM6A TSPYL4 NXPH3 RAB11A APOD C11ORF96 SDC4 MAP1B PFN2 RAP1GDS1 ZNF319 TMEM230 NRCAM TMEM191A NDUFA11 NSF PVRL1 RHOB AES SARAF NCEH1 CLDN11 KLHDC3 VAV3 NCDN YWHAZ COX4I1 PGK1 CX3CL1 UBL4A DNM3 ARF3 GAP43 NDUFB11 PRRX1 C1ORF52 HMGCS1 AK5 NDRG4 GUCY1B3 MYRF AP2M1 TBR1 ATP1A2 DMTN NDUFS5 MT-ND4L YJEFN3 HEPACAM SPRN HNRNPA1P40 NUDT4 ALDOA RAB3B SERF2 SYTL2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "oligodendrocyte C",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-CO3 MT-CO2 CHN1 MT-ATP6 SNAP25 MBP TUBA1B SYT1 RTN3 CCK MT-ND4 MT-ND1 CALM3 MTRNR2L12 MT-ND3 YWHAB SCN3B NRGN MAP1B PRKCB MT-CYB AK5 PSAP ACTG1 ATP6V1E1 SCN2B GMFB ARL6IP1 EHD3 STMN2 FAM127A PLP1 MT-ND2 CREG2 CA11 TPPP SLC30A3 PPP3CB YWHAH ITM2B ITFG1 RAB6A CALM2 CAMK4 ETV1 TSPYL1 KLC1 NCALD PREPL EIF1AX SYN2 CLSTN1 GAP43 DPYSL2 CAPZA2 GPM6A VAMP2 SLC17A7 OAZ1 HPN CLU IDS MORF4L1 GCHFR PEBP1 PPP3CA DKK3 BDNF ZNF425 EPS15 SUB1 UBE2M TUBA4A PNMAL2 NFIA SEMA3B NDRG4 RPL36A RPL17 NCEH1 NUAK1 BSCL2 NPTXR ATP9A CFL1 KIAA1755 NGFRAP1 LYNX1 DCLK1 CNTN1 SGK223 ACTB SNX10 MTPN TRIM36 PHYHIP CTNNA3 CA2 RAP2A ALDOA SERPINI1 NAT8L DNAJC6 SKP1 NHP2L1 MAPK1 KCNAB2 PDP1 LGALS1 RNF11 PRNP SLC1A2 RTN4 KIF1A ERBB3 PAK1 DDN YWHAZ SNAP91 ELAVL2 SKAP2 BTBD10 KIF5A HSP90AB1 NDUFB1 GDI1 RAB3C CD99L2 DMTN RAPGEF5 RPL37A RTN1 RAB31 UQCRC1 MAPK8IP2 INPP5F MTRNR2L1 ST18 ERH CTSD SULT4A1 MOBP FGF12 MTRNR2L8 NUTF2 TOMM34 C1ORF115 COL9A1 FOXP2 COX8A ELAVL4 KIF21A ATP1B1 TLE4 NEFH DHCR24 PNMA2 CA10 PGM2L1 NCAM2 ARF3 NPTX1 POLR2L FOLH1 BEX1 COPRS TMEM35 COX7B PKM PPP1CB VDAC1 ZBTB18 UQCRH LDB2 ATP6V1C1 PRKCG SLC22A17 MYL6 FBXL15 MAP1A PRELID1 CEND1 CLIP2 ARF1 VSTM2L PCMT1 SYNGR1 SPOCK1 KIF3C MPPED1 MDH1 PLD3 TOX3 OPRK1 CDH13 RGS4 PI4KA RHEB TOMM20 RPL13 CERS6 UHMK1 VSNL1 PTPRN GAPDH DYNLL2 HOPX BAG4 TMEM144 CALM1 OXR1 MAP2K1 SLC2A1 RFK ATP6AP1 RPH3A NEFL CKB FTH1 TBR1 THY1 RAB2A SARAF PPP3R1 SEMA3A PGAM1 TUBB3 MTRNR2L6 NSF ATP6V1G2 PLEKHD1 HNRNPA1P40 TBC1D15 AC244489.1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "oligodendrocyte C",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PCDHGA5 MTRNR2L12 ZNF385D MT-CO2 ZBTB20 VCAN PTPRZ1 MT-ATP6 CFH SPOCK3 MT-CO1 SOX6 MT-ND2 TXNIP DRAP1 MT-ND1 NDFIP1 CLSTN1 SCD5 NFIA MTATP6P1 MBP PDE1C CPLX1 ONECUT1 PGRMC1 FIGN PSAP UBC TOMM20 RPL31 ATP2B4 B3GALT2 TSPYL1 LRP4 BCAT1 MT-ND5 ATP1A2 OPCML MTUS1 MTRNR2L8 PTPRN2 CNTN1 RP11-111M22.2 RTN3 ATP1B2 C1QL2 ASAP1 ALDH5A1 CCND1 NPAS3 NDUFB3 YWHAG CREB5 SMIM12 CAMK2G MTRNR2L1 PTGES3 PID1 PCBP1 APOD MOXD1 ATP5E TMEM59L GPRC5B WBP2 UBQLN2 MT-CYB CALM1 CLU KCNK2 DNER GRAMD3 DGKG GLUL RRM2B RGCC HSP90AA1 GTF3A ENO2 COL20A1 COTL1 MT-ND3 CD63 ALK RPS19BP1 KIF1A CTBP1 PPP3CA GPR56 SERPINE2 ALCAM SOX4 B3GNT1 NARS LUZP2 CADM2 ERBB4 ATP6V1C1 NCKAP5 CHN1 ITM2B LRP1B SUMO1 CAMK4 ATP1B1 PPFIBP2 SLC1A2 MT-ND4 GAD1 PLEKHH2 OR6D1P LGI2 CHL1 SCN1A GDI1 ITPR2 RPL18A PSMD12 PAFAH1B2 MT2A PPP2R2C RTN4 RAB7A HIF3A TCEA2 SYTL2 RAB3B CD59 RPL13A GTF2H2C_2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "oligodendrocyte precursor cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: TMSB4X CHN1 PEBP1 PRNP ARPP19 HSP90AA1 TF MT-CO1 PTGDS MAP1B SYT1 HSP90AB1 PSAP GLUL MT-CO2 NRCAM CALM3 SKP1 SNCB ARF3 VCAN CALM1 SLC39A10 CLU PGM2L1 LGI2 RPL26 CADM2 PRKCB MBP OR6D1P SLC2A1 LMO3 MYRF SLC17A7 PDGFRA COX6C IFI6 AP1S1 NPTXR ATP1B1 TMSB4XP4 TUBB4B PLP1 IQSEC1 HEY1 DHCR24 PRKAR1A VAMP2 CHGB RAB3A AKAP12 TSPYL1 TPD52 SCD5 PDE1C DNAJC5 ATP5J2 SLC38A1 MTCH1 PGAM1 TRAPPC1 GPR56 YWHAG H2AFZ RTN4 MKX EIF4G2 ARF1 EFR3A DOCK10 PMP2 BEX2 ERBB4 KCNS3 APOD IMMP1L NDUFB11 CCK SV2B COX7A1 THBS2 ATP1A2 SLC22A17 GDI1 MFN2 OAZ1 PHPT1 BNIP3 SYN1 NECAB1 RAB31 SPOCK3 FTL STMN2 NGFRAP1 TNNT1 PPP3CA COX8A TCEB2 RPL37A MT3 SYT11 ATP6V1F PFKP TLE4 CLSTN1 TMX4 COPRS EDF1 PACSIN1 PLCB1 NAP1L3 UQCRB ENC1 MT-ND3 UBB RTN3 PPP2R2C MTRNR2L12 RPL23A HMP19 MRPL12 COL20A1 TMSB10 CORO2B TUBA1A DPF3 ZBTB20 LYNX1 MARCKSL1 PMEPA1 PPARGC1A VSTM2L GRM3 SEZ6L2 NDUFA13 RPL8 ARL6IP5 OLIG1 NAA38 DNER FAM3C NAPB PIN1 GNG3 UBQLN2 KIF21A CALM2 SULT4A1 SPARCL1 SCAMP5 SH3RF1 HPRT1 MTG1 NCKAP5 PPP1CB PRDX5 HS6ST3 ITM2B CSDE1 POLR2K KCNMB4 AC244489.1 BEX1 SUCLA2 RPL15 ARL6IP1 YWHAB TMEM200C PJA2 EID1 NDUFAB1 FAIM2 RPL31 STRAP LAMTOR1 FAM174A HMGCR SCN3B PKM RPL3 GUCY1B3 MAP2K4 ATP9A C19ORF70 B3GNT1 PSMA7 LMBRD2 NKAIN4 RAB3B SYTL2 ATP6V1G2 NGRN ARF5 NSF BSCL2 BIRC5 RNASEK-C17ORF49 DNAJC21 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "oligodendrocyte precursor cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PTPRZ1 VEGFA GPM6A RAB3IP ACTG1 RP13-492C18.2 SCD5 PPAPDC1A TMEM147 CLU MT2A SULF2 VCAN EDIL3 PROM1 SYT11 GNB1 TUBA1A CPE RPL13 COX6A1 ACTB VPS35 GADD45B TPI1 BCL6 PGK1 RPL12 TSC22D1 PTGDS STMN1 SLC1A2 CHCHD2 MT-CO2 HTRA1 FBXW11 CFH EIF1 SPOCK1 AC011043.1 ACLY ITM2C CAMK4 ARF5 MTG1 UQCR10 LMO2 MGST3 ZFAND5 FKBP1A CAMK2D ADAMTS9 ASAP1 EIF4A2 CCDC85B OPN3 CKB PPIA SPCS2 TMSB4X APP CLTA OLFM1 OLIG1 UQCRC1 FXYD6 COPS8 APOD RTN3 SLC39A10 CDK5R1 COL9A1 RAMP1 PPP2R2C THBS2 SLC7A1 PDK4 ENO1 SLC25A4 HDLBP TRIB2 IQSEC1 RPL37A ATP5G3 PNMA2 SYT1 NDRG4 GABARAP PREX2 DDAH1 BCKDK GPCPD1 RPL7 SSTR2 CLIP3 HSP90AB1 PSMA7 GPR56 PDGFRA ATP6V1B2 SPARCL1 CRTAC1 TMEM35 RPL32 GAPDH YWHAG C14ORF2 CISD1 PRKCG QKI CST3 NDUFAB1 MT-ND5 PJA2 TANC1 FAM84B ADAMTS1 KAL1 CLSTN1 CEND1 PPAP2B C4ORF3 GFAP CPNE8 PMP2 RPL23A FABP6 ATP6AP2 CDC42SE2 CALN1 C7ORF50 NXPH1 CNDP1 MRPL20 MAP1B PLTP RHOB RPS27A CHN1 GFRA1 VAMP2 RPL26 SOX6 UBL4A GRIK3 CREB5 NDUFA4 CARTPT ATP1B1 SNX17 C19ORF43 MYL6 CSPG4 ADM NDUFC1 ARF3 CREG2 TUBB4B PFKP JAKMIP1 CYCS ID2 RAB7A ATP5G1 RPL17P50 F3 ZBTB20 TMX4 SRP14 DRAP1 PLCB1 RP11-111M22.2 TOMM7 NDUFA1 B2M CMPK1 PCMT1 RASGRF1 SNAP25 EPB41L3 RAD23B SLC38A1 ATP2B4 NRCAM TIMP3 CHL1 ATP2A2 HPRT1 TMEM59L APOE SOX21 MARCKS KCNA5 FGFR3 NHP2L1 CALM1 SRM NPAS3 AES FTH1 ATP5I CTDSP1 SLC22A17 JUND LIMK1 FAM84A RAB3B SYTL2 ZNF385D RP11-219A15.1 PLEKHD1 GTF2H2C_2 PCDHGA6 PCDHGA10 PCDHGA5\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "oligodendrocyte precursor cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PTPRZ1 MT-CO1 VEGFA MORF4L1 ZBTB20 RPL13 APOD OAZ1 DNAJB9 RPS2 OLIG1 ALDH5A1 CKLF MT-ND3 ANAPC11 SEMA5A NDN TMSB10 DNER ZNF385D RAB3B PDGFRA COX6A1 SERINC1 CD63 OLFM2 YAF2 VCAN ATP1A2 COL6A1 CPE RPL36A PPP2R4 RTN4 GHITM MAPK1 BANF1 KLC1 BEX4 ATP2B2 MT-CO2 SYT1 APOL6 CALCRL TMX4 MAP1A SCN1A GPD1 BAD CFL1 NDUFS6 CALM1 RPS27A SLC40A1 LMO4 STMN1 ETFB PCBP1 GFRA1 NTNG1 C1QL1 LAGE3 PPIA DPYSL2 MT1E NGFRAP1 BAALC KCNA5 RPS3A UCHL1 PEG10 SEZ6L PTN APP ITM2B FOS PCDH17 GPM6A NTN4 RAB3IP NOP10 MT-ND2 RPS15 TRAPPC1 FAM131B COL20A1 CAMK4 NKAIN4 STRAP COL4A5 NHP2L1 TBCB POLR2J PRDX1 PREX2 SPATA13 PRKACB RPL10A AP1S1 RAP1GAP2 ARPC5L VSNL1 JUN EIF1AX CST3 NFIA RPL41 NDUFA13 ATP1A1 FTH1 ACTG1 OPCML DYNLL1 CHMP4B ITFG1 LRP1B MT3 SCD5 PRSS3 C19ORF10 IFITM3 TUBB2B SOD1 TMEM59L PSAP GRIN1 COX7C NPAS3 FAM84A CLU RAB2A RPH3A GADD45B VDAC3 PCDH19 CACNG3 TSPAN7 QDPR MT-ATP6 KCNA2 DDN KLHL5 NDRG2 RHOA SYN2 RPL8 SLC7A5 NNAT OPA1 MT-ND4 RAP1GDS1 KCNAB1 HS6ST3 ELAVL2 CTBP1 SYT3 PSMC3 ELMO1 CLEC2L RPL18A DNM3 H2AFZ ARPP19 NDUFC2 IL3RA ERBB3 NDUFB7 ZNF174 SCN3B IFI6 MT-CO3 NGRN B2M DNAJC21 ALDOA TBC1D15 MIF RPL7 PLEKHD1 HNRNPA1P40\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "oligodendrocyte precursor cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MBP MT-CO3 PLP1 PTPRZ1 SYTL2 ADAMTS1 KIAA1755 SOX6 MT3 TBC1D15 MT-ND3 SCD5 MARCKS CD99L2 MT-CO1 DUSP1 ZCCHC24 ZBTB20 SLC1A2 ZFHX4 RPL31 PCDHGA10 PID1 MT-CYB SNAP25 EDIL3 OLIG1 TF PCDHA4 CST3 SPARCL1 FERMT1 SLC38A1 MRPL52 RAB40B MTRNR2L1 BRK1 ENPP2 RPL41 EFR3A MT-ND2 PRNP SLC22A17 C19ORF43 C14ORF2 UBQLN2 DLC1 RAB34 SYT11 RPL13 COX6A1 COX6B1 ACTB ACTG1 ATP1A3 MEGF11 PTMA C1QL2 KLC1 NXPH1 CNTNAP5 GPM6A GAPDH PPAP2B PDLIM5 UBL5 MTRNR2L12 RPP40 COMMD6 TOMM34 PLCD1 RAB3IP LHFPL3 ARL8A CLDND1 NFIA TMEM200C NDUFS5 MT-CO2 PPP2R1A CHMP4B APP TPPP MT-ND4 TMA7 FTH1 ATP13A4 RPS4X CAPNS1 MT1X TMEM88B USP5 SPOCK1 TSC22D1 MAL ARL6IP1 RRAGA GRIK1 ATP1B2 TXNIP CFL1 MT-ATP6 CALCRL MOBP UCHL1 NPAS3 MEGF10 COL9A2 TMTC4 OLIG2 STMN1 CNP NDUFC2 VCAN FIBIN SLC25A5 ATOH8 CALM2 KIF7 MTRNR2L8 NDRG2 RPL35 COX17 RHOA RPS28 RP11-111M22.2 CPE CLTA SRP14 ATP1A2 ST18 ARMC3 PTGDS TSPAN7 NUDT13 STXBP1 TUBB4A ATP6V0E2 PRKAR1A WIPF1 DPYSL2 CLU DYNLL1 TMEM151A VAMP1 PCDH17 CLIP2 MAST3 CTGF LRP1B SLC7A5 NR4A1 ATP2B4 CYB5R3 COL9A1 CA11 QDPR LAGE3 RPL32 OR6D1P MTRNR2L6 BSCL2 ALDOA IDS HNRNPA1P40 RPS26 RPL21 DNAJC21 CFH\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "oligodendrocyte precursor cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PTPRZ1 MT-ND4 MT-CO3 MT-CO1 MTRNR2L1 MT-ATP6 SCD5 MT-CO2 VCAN MT-ND3 VEGFA SLC6A1 PCDHGA5 MT-ND1 MT-ND2 MT-CYB WIPF1 SLC22A17 CHST9 SULF2 RAB3IP PDGFRA TBC1D15 MTRNR2L6 MTATP6P1 ATP2B4 HTRA1 SHC4 HSP90AA1 RPL35 CLTC BCAS1 MT1M DOCK10 COL9A1 C1QL1 TPT1 COL6A1 ARL6IP1 GPNMB MT3 MTRNR2L12 CPE PIK3R1 GDA PPP2R2C HSPE1 PLCB1 CADM2 ERBB3 CTNND2 SEZ6L NDUFV1 TMEM200C SPARC UBA1 IPCEF1 PCSK5 TLE4 SPTBN1 GPM6A TUBB4B VSTM2A FGF12 ZBTB20 TMSB4X RPL13 LAMA4 ASAP1 SLC9A6 OLIG1 RPL21 PRNP NTN4 PTGDS DDR2 RP11-632C17__A.1 NXPH1 PRKAR1A ATP2A2 DNER GPR56 HIGD1A CLEC14A ITM2C SNAP25 CLSTN1 CHGB TMA7 RPL37A ATP1A1 TMSB10 RPS2 AP3S1 POLR2K DPP6 CFL2 NOTCH1 ATP6V1E1 BEX4 PTN ZFAND5 COL11A1 TOX2 UBB ATP6AP2 ACSS1 CERS6 PJA2 ETV5 ZNF385D RAB3B SYTL2 RPL41 BSCL2 RPS26 RPL7 RPL36A\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "oligodendrocyte precursor cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: VCAN PTPRZ1 RAB3IP DISC1 SNAP25 TBC1D15 PLCD1 CADM3 NEGR1 C1QBP MT-CO3 PDGFRA CBX6 SOX6 ATP13A4 WIPF1 TLR4 ZNF365 CALM1 BGN NFIA MARCKSL1 WBP11 RAB1A PLD5 SULF2 KLHL5 SLC9A9 NTNG1 VDAC1 KIF7 YWHAZ KCNK1 AXL PLEKHH2 RTN3 FAM96B PRKAR1B MTMR9LP RPL35 PGAM1 REEP5 APLP2 POMP COA4 TMC2 NKIRAS1 GMFB MT-CO2 GPR37L1 SCD5 INSIG1 DNM3 PEBP1 MARCKS NTN4 PPAP2B ATP2B2 GPR56 MAP1LC3A TPT1 NKX2-2 KIFAP3 RNF11 ZCCHC17 PPP2CA TEFM HMP19 RPS5 MT-ND1 OLIG1 MAPRE3 PVRL1 HSP90AA1 SERPINE2 ZFP36L1 KCNAB3 ZFAND5 ZCCHC24 TTYH2 ARL2BP MT-ND3 RPS27A ATP6V0E2 PTPRS GPRC5B CALM2 PLCXD2 BCL11B STK39 TRIM37 RPL13 CLTC CLTA COL12A1 TMEM147 EXTL2 LAGE3 SPARC RAB3B ZNF385D ESCO2 SYTL2 ATP1A1 CYB5R3 PCDHGA6 PCDHGA10 PCDHGA5 DNAJC21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "oligodendrocyte precursor cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: VEGFA SNAP25 FTH1 RAB3IP GAPDH PTPRZ1 RAB3B SYTL2 RPL38 RPS2 OLIG1 APOD MT-CO3 HMP19 CADM2 QKI ACTG1 PLOD2 FASN ANXA7 MT-CO1 ZFP36L2 CLTC SCD5 ETV5 ZBTB20 IGFBP2 RP13-492C18.2 GPR37L1 NKX2-2 ESYT1 NDUFB5 NTN4 ACLY ISCA1 WSB2 HTRA1 PLEKHH2 PKM NRCAM RPL41 RPS4X NOS1 GPX1 PFN2 FABP7 MT-ATP6 HES1 NEGR1 SMOC1 RAB31 METTL7A EDIL3 FLOT2 PGRMC1 BGN GHITM BNIP3 NACC2 PTCHD4 SCN1A SERPINE2 OCIAD1 ITM2C PCDH15 COL20A1 COX7B VSNL1 CYP26B1 SUMO2 GOLIM4 SCD VAMP2 MBP RPL13 GPM6A RNF11 LUZP2 SSPN IGSF21 RTN4 MTRNR2L12 RNF181 MT-ND3 COL9A2 RPL36A OLFM1 EIF4G2 SYT11 CLU DUSP4 SLC1A3 NDUFS5 MT-CYB TBC1D15 DNAJC21 RPL21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "oligodendrocyte precursor cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PTPRZ1 PDGFRA ZBTB20 MT-CO3 VEGFA CADM2 VCAN NFIA DGKG DISC1 SYTL2 RAB3B OLIG1 RPL13 MTRNR2L1 ATP1A2 SUB1 COL20A1 PIEZO1 QKI PCDH15 RPL31 OLIG2 NAPB ZFHX4 SCD5 CHCHD2 MT3 TXNIP CA10 SYT11 APOD MT-ND3 GPM6A APP FTL FRMD4B PLEKHH2 PTN RAB31 KCNAB1 PRUNE2 MT-CO1 H2AFZ GUCY1B3 C1QL2 CPE LAMA4 PTMA PCDHA4 PCDH17 CFH CST3 ATP2A2 ERBB3 RABAC1 SEMA5A SNAP25 TBCB CNTNAP5 SALL2 SOX6 FBXO2 MAP1B TSC22D1 DOCK10 THSD7A THY1 TCEB1 PCDHA10 PSAP HEPACAM PGK1 ELAVL2 ZCCHC24 BEX2 KIAA1755 PRKACB TCEAL5 TMEM130 MGST3 PPP1CB SOX4 INPP5F PRKAR1A TOX RPL15 LINC01296 TUBD1 USMG5 NDUFAF2 MPC2 COX6A1 HSP90AB1 ATP1B2 CHL1 BGN SLC24A3 KCNMB4 MT-CYB ZFP36L1 ARL6IP5 MT-ND5 CD63 KCNK1 SPTBN1 ARF5 CMTM5 MZT2B COL9A3 DPYSL2 DPF3 COL4A3 EDNRB PMP2 HMP19 PRTG UHMK1 FAM19A1 ELAVL4 FKBP4 DNER GABARAPL2 DUSP6 SELM SPARCL1 KRAS MFN2 ACSS1 RTN4 DAB2 PRNP FABP7 KLHL13 RPS27A ATP13A4 NGRN MTRNR2L6 MIF RPL3 CYB5R3 RPL13A PCDHGA10 PCDHGA6 PCDHGA5\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "oligodendrocyte precursor cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PTPRZ1 OLIG1 RAB3B MT-CO3 PCDHGA5 CHL1 SMOC1 ATP1B2 SOX21 MYO10 AES MT-CO2 MT-ND2 GAPDH COL9A1 PI4KA PDGFRA SNAP91 ETFB PEPD ARFGAP2 ZBTB20 ANKRD18A GPNMB DGKG CDK5R1 KCNA2 OLFM1 APOD ASIC4 SOX2 PPFIBP2 ACTG1 HEPACAM FGFR3 VIPR2 KLHL12 RHOA DOCK10 CLGN PREX2 QKI MBP SEPP1 SNAP25 IDI1 PHPT1 MTUS1 ATP1A2 SPOCK1 VAMP2 MARCKS MLLT11 TRHDE CSDE1 CNTN1 SLC22A17 GPR37L1 IGSF21 ATP6AP2 GPRC5B UBE2D2 SALL1 RRM2B GPM6A NOTCH1 TMX4 C1QL1 METTL7A HIST1H2AC DNER CAMKK2 C1QL2 MT3 RPS6 ABHD14A TLR4 ATP2B2 RARRES3 CLIP3 RP11-111M22.2 POLR3H GPR56 RAD23B NRCAM LHFPL3 SOX10 SLC1A3 TLN2 ARPP19 ERBB4 BIRC5 MT-ND4 NFIA PON2 ATP5A1 ALDH1A3 DYNLL1 CDH13 ARL6IP1 PID1 EDIL3 GNAQ PCDH17 RPL6 SERF2 TUBB DNAJC21 TBC1D15 TF\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "oligodendrocyte precursor cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PTPRZ1 MT-CO1 PLEKHH2 SCD5 NFIA SNAP25 MT-CO3 NXPH1 SNX22 ZBTB20 SLC1A2 ACTG1 LRP1B MARCKS SLC1A3 VCAN PCDHA9 MT-ND2 RAMP1 ZFP36L1 EBF4 RP11-111M22.2 NDUFA1 ERBB3 CPE NDUFB7 ASAP1 GFRA1 MAP4 UBC LYPD1 PCDH17 PSMC1 MT-ND4 ITPR2 NPTXR FJX1 STXBP1 TCEAL2 NRCAM STUB1 CNTN1 LAMTOR5 ATP6AP2 FASN PPAPDC1A ANKRD18A CBX6 TOMM20 ATP2A2 REPS2 MT-ND1 LPPR4 APLP2 TUBA1A GPR56 NKAIN4 NUP37 CRISPLD2 ATP5I BEND4 NR1I3 GABARAPL2 EIF1AX TSPYL1 FBLN2 MT-ND3 PMP2 SH3BGRL3 YWHAB FIBIN CREB5 CKB MAP1LC3B CENPVP3 OAT MTRNR2L1 MTATP6P1 SELT ENOPH1 ARL6IP1 PID1 ETV5 PPIA PGM2L1 OLIG2 OR6D1P PDGFRA PROX1 FAM69C GPR37L1 GPM6A PPAP2B LAMA4 BEX4 ATP1B1 PSMD12 PDLIM5 MTRNR2L12 GPRC5B DNER NCALD MAP7D1 GRIK1 FAM131B GPR98 ATP2C2 EIF4A2 NDRG2 CYP2R1 PCDH15 SOX6 TMSB10 MT-CYB NRGN PSAP COL20A1 BCAS1 SPARC NDFIP1 RAB3IP LMO3 SLC6A1 SKP1 AKAP12 MT-CO2 OLIG1 MT-ATP6 BAALC ATP5G2 TBC1D15 DNAJC21 HBA2 HBA1 IDS MTRNR2L6 SYTL2 ARFGAP2 RAB3B RPL21 PCDHGA10 PCDHGA5 PCDHGA6\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "oligodendrocyte precursor cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: TBC1D15 ACTG1 EID1 CLSTN2 RAB3B SYTL2 FERMT1 CISD1 ZCCHC24 MTRNR2L1 RELN NR1I3 BIRC5 EHD3 PSAP SERPINE2 RP11-111M22.2 OPALIN TRIM47 ARL6IP1 SNAP91 TBR1 TMSB10 SNX22 RPLP0P2 ATP5F1 PFDN1 COL5A3 PRNP TMOD2 GPCPD1 VEGFA PRKAR1A NOTCH1 ARL2BP EIF4G2 MYL6B GPNMB PDGFRA WFS1 TRPC3 UQCR10 PKM CFL1 TMSB4X SCD5 BTBD10 ID2 OR6D1P KIT GLIS3 SYT1 ENO2 MAP1A RPS10 DKK3 MORN2 ITFG1 SOX4 NDRG4 FARSA CLU SKP1 MAST3 OCIAD1 MT-CO3 COL20A1 SULF2 RPL38 ATP6V0E2 RPL31 RPS15 KIF21A SCN1A PCDH15 IFITM3 ATP2A2 UROS ACTB RP11-20I23.1 PFN2 SLITRK1 RGS12 FTL NRCAM ATP6V0C TCEAL2 CFH RPL13 NGRN MTRNR2L6 DNAJC21 ZNF385D\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "oligodendrocyte precursor cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RAB3B VCAN OLIG1 MT-ATP6 PTPRZ1 SNAP25 ACTG1 MT-CYB SERPINE2 PDGFRA GORASP2 MT-CO3 ATP1A2 NFIA GPNMB SMOC1 ACTB MT-ND1 TSC22D4 SARAF ADARB2 PJA2 YWHAZ ARFGAP2 TUBA1B NCAM2 TPT1 SCN1A GPRC5B BEX5 PCDHGA10 SLC1A2 MT-ND5 NDUFB8 BSCL2 PHYHIPL MT-ND2 GRIK3 HTRA1 TSPAN7 PDLIM5 PPP3CA ETV5 WSCD1 MDH1 RAB31 MBP ZFHX4 B3GNT1 OR6D1P MT-CO2 MT-ND3 ZNF365 HSPB1 MEGF11 SULF2 SCOC KIF1A NR1I3 TMEM130 PCDH15 MT-ND4 ARF1 MTRNR2L12 FIBIN ASCL1 MT1X SPTBN1 SUMO3 VAMP2 ETV1 APOD PLEKHF1 NAT8L FIGN ZBTB20 ARL8A RAMP1 CD59 ATP6V1A ATP1A3 GPR56 CADM2 ELAVL4 OCIAD1 DPYSL2 ABCA8 ATP6V0E2 CNTNAP5 SPARCL1 COL11A1 HNRNPH2 GAPDH FKBP4 SCD5 PEA15 GFRA1 PSAP KLF3P1 RNA5-8SP6 BCL6 SEZ6L2 ATP5I ENO2 BEX4 THOC7 CHL1 DNER MARCKS MT-CO1 RP11-111M22.2 BIRC5 CFH RPL21 CAPZA2 MIR6723 RPL12 AC244489.1 HNRNPA1P40 SYTL2 PLEKHD1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "oligodendrocyte precursor cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SYTL2 RTN1 MT-CO3 MT-ND1 MORF4L1 PTPRZ1 TSPYL1 SARAF PPP3CA HOMER1 RTN4 MAST3 RAB6B ATP6V1B2 UCHL1 WASF1 PKM ATP2B2 GAPDH KIF21A TBCA AK5 RPL41 CLU STXBP1 CALM1 PRKCE CADM3 RTN3 MT-ND4 RNF11 HINT1 SYT1 CAP2 ATP6V0B MT3 TBC1D15 DPYSL2 PFN2 ARF3 COX7C HSP90AB1 FBXL16 NDFIP2 SYT11 PJA2 TIMP1 SLIT1 STX1A TUBA1B HTRA1 PSMC3 AEBP1 MT-ND2 LINGO1 PREPL CDK5R1 CALM3 ATP2A2 CARTPT RPL37A GPR56 WASL TXN KCNF1 ACTB IDS RPL11 STX1B NRCAM FTL FGF2 ALDH1L1 GNG3 MBOAT7 TOLLIP ARL4D ITM2C RPS28 BNIP3 THBS2 RPS12 PTK2B STMN2 MTRNR2L1 STK39 MSMO1 NGFRAP1 LMO4 DDN NAT8L CLSTN1 NDUFA4 YIPF3 TOMM20 MYL6B OCIAD1 UBE2D2 PPP3CB MTRNR2L12 SLC25A4 ATP1B1 RAB31 HDDC2 HNRNPH2 APLP1 CABP1 FAM134A ATP6V0E2 MAP2K1 MT2A HMGCS1 ATP2B4 RPS2 PEA15 MRPS7 GABRA1 HK1 KCNIP1 KIF3C ATP5I RSL24D1 SYNGR3 SOX6 REEP2 B3GNT7 IPCEF1 MT-ND3 TP53I11 GABARAPL1 NFIA AP2M1 PSMD2 CADM2 ATP13A4 CLTC MTRNR2L8 ANXA6 CST3 GRINA TMSB4X SOD1 TCEA2 ENC1 PTMA CCK THY1 NDRG4 PPP2R2B UQCRB LMO3 RGS4 GPX4 PPP2CA YWHAB SERPINE2 ADSS COL11A1 CCDC115 ASAP1 NTNG1 VPS35 VEGFA CRIM1 MTCH1 MAP1B OXR1 HEPACAM CAPNS1 TMEM70 PLOD2 FA2H PRNP CLIP3 HSP90AA1 RPL21 DYNLT3 SUMO1 NDFIP1 MZT2B ERBB3 SELT ZNF365 VSNL1 WSB2 ATP9A TSPAN7 SYN2 LRRIQ1 ATP5G1 RP11-20I23.1 ATP6V0C PPAP2B NSF ATP6V1G2 ARFGAP2 TUBB PCDHA9 PCDHAC1 PCDHA10 PCDHA4 RAB3B DNAJC21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "oligodendrocyte precursor cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT2A UBB STMN1 TUBA1B SERF2 TCEAL3 ACTB PSMA7 YWHAZ APLP2 H2AFZ JUNB SLC1A2 CENPU RPL13A ASPM RPL23A C4ORF3 PMP2 QKI SNAP25 ZBTB20 VAT1L PLCB1 BANF1 GDI1 TMSB4X ALCAM FAM131B CHCHD2 PVRL1 CDCA7L DNER TCEAL2 LRP1B RGS4 APP SLC1A3 RPS15 NRCAM PPP2CB SYT1 NME1 RPL7 CHL1 SLC12A5 TMA7 PTP4A1P2 PTPRZ1 CCL27 SSPN WBP2 RPL11 TLR4 TSPYL1 ZFHX4 CST3 MT3 KIF3C COL11A1 TMEM123 PROM1 GAPDH MRPS21 KIFAP3 FTH1 UQCRH PAQR8 FIS1 DYNLRB1 IGFBP5 CTBP1 RPL26 MARCKS PPP5D1 SARAF GLUL COX6A1 TPI1 CD9 PFN1 RPL7P38 KLC1 CAPZB TMSB10 RPL12 DYNLL2 CRISPLD2 NGFRAP1 TUBA1A GRIK1 INPP5F TOMM7 LHFPL3 LSM4 BCAT1 FOS EDF1 SLC22A17 PIEZO1 SOX6 RANBP1 ARL2BP SLC25A5 HMP19 ARPP19 CNTNAP5 FBLN1 ATP6AP1 MORN2 ARL6IP5 RP11-632C17__A.1 POLR2K RPS3A SLC25A48 FIGN PSAP NFIA SOX11 OCIAD1 VAMP2 NRIP3 ASAP1 CA11 ARFGAP2 NUDT4 MT-CO3 RNASEK-C17ORF49 RAB3B SYTL2 ZNF385D TUBB RPL17P50 RPL17-C18ORF32 RPL17\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "oligodendrocyte precursor cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-CO3 MTRNR2L1 MT-ND4 MT-ATP6 MT-ND3 APLP2 MT-CO2 SLC1A2 VCAN PTPRZ1 MT-CYB ZCCHC24 RP11-111M22.2 CRISPLD2 SPARCL1 SCN1A LUZP2 SMOC1 NFIA RAB3B ZNF385D ATP13A4 RPL13 STMN2 LAMA4 PLEKHH2 RAB2A ATP2B4 DNM3 KCNJ10 GPM6A TSPAN7 MT-ND2 ASAP1 RAB5C TPD52 ERBB3 MARCKS PHF11 FAIM2 PLD3 ITM2C LRP1B ASB13 RTN1 GPRC5B ZBTB20 CERS6 SNRPN HTRA1 NDUFS5 SCD5 PSD3 DCC BAI2 SKP1 COL9A1 HSP90AA1 RPL38 GPNMB BCAS1 KIF19 ERBB4 CNTNAP3 SARAF PRDM16 SLC6A1 NDUFB2 APOD NAT8L LRP4 MT-ND4L ALDOC OLIG2 NACC2 NDRG2 GPR17 PDGFRA COL20A1 OCIAD1 SNAP25 NDUFA1 MTRNR2L12 ACTB ADORA1 RTN3 SNX22 MT-ND5 DLC1 JUND ZFAND5 SOX2 CREB5 ITFG1 CSDE1 TMEM35 GHITM ZFP36L1 GPR98 MYO16 RPL35 PDK4 THBS2 HMP19 MTND6P4 TENM1 MT-ND1 GPR56 VWA1 ITPR2 MTRNR2L6 RP11-219A15.1 DNAJC21 TBC1D15 CFH\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "oligodendrocyte precursor cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SNAP25 VCAN PTPRZ1 SCD5 SLC1A2 SYT11 APOD NR1I3 TBC1D15 SCN1A CHL1 MT-ND4L CKB SLC22A17 EDIL3 RHOB NTN4 GPR56 AZGP1 BCAS1 COL11A1 MT-CO3 NFIA MT-ND4 ACTB QKI MARCKS COL20A1 VIPR2 SQLE PDGFRA VAMP2 SNRPN C9ORF16 TIMP3 TMEM200C SARAF C6ORF118 EPS8 SMAP2 SOX10 CD63 ITM2C PPIA GYG1 ARL6IP1 HS6ST3 MT1X MBP SNX3 VWA1 ADAMTS9 ATP6V0E2 RPS28 HEY1 HTRA1 ATP5O PPP1CB CYP27A1 MT-ND1 PHYHIPL TSPYL1 PON2 SPCS2 NIPA1 VSTM2A NOP10 EIF4A2 NDUFA8 GPRC5B TCEB1 C1QL2 DPP6 RELL2 GLUL DGKG EFEMP1 RGCC SKP1 ATP2B4 C14ORF2 PSD3 GABARAPL2 SOX6 AES CALCRL TOMM7 CAMK4 PIK3R1 MT3 MT-ND3 CAPZB RAB31 BMP2 MARCKSL1 SLC19A3 BIRC5 PMP2 NDUFC1 NRCAM CADM2 ATP1B2 CRYAB C10ORF54 ARHGAP42 RPL3 EIF4G2 CDH8 TEFM ATP13A4 MT2A TMEM132C SLC1A3 MAPK1 COX6A1 FTL ERBB3 SEPW1 GPNMB FMO5 S100B MT-CO2 DNER TXNIP RPL6 CALM2 DUSP6 NDRG2 RPL35 HIF3A MAP1A BCL6 RPL31 SEMA5A FGF2 SLC6A1 C16ORF13 SERINC1 COTL1 TENM1 PPP2R4 COX5A SERPINE2 NPAS3 RAMP1 KLHL5 CSPG4 SOX2 NR4A2 COX14 COL9A1 ZNF385D SYTL2 RAB3B GPR98 RPL23A GTF2H2C_2 RPL13A HNRNPA1P40 PLEKHD1 PCDHA9 PCDHA4 PCDHA10 PCDHAC1 PCDHGA10 PCDHGA5 PCDHGA6\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "oligodendrocyte precursor cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RAB3IP JUN PTPRZ1 RPL31 PSD3 PMP2 VEGFA SYTL2 ZNF385D COX7B ENO1 COX7C PDGFRA ZFP36L2 VCAN DPYSL2 RPL12 ATP5I NKAIN4 RPL13 BCAT1 SLC1A2 SCD5 GADD45B MT2A ENO2 RPL23A SNAPC5 BCKDK UQCR10 ESCO2 TBC1D15 LDHB PEBP1 TIMP1 CEND1 FTL MT-ND2 MRPL55 VSNL1 OAZ1 SPARC FTH1 LUZP2 SUB1 CCK CHL1 ZBTB20 PRDX5 RPS27A S100B FOS GRINA EZH2 SLC1A3 ARF3 YJEFN3 B3GNT7 MRPL51 USMG5 PLEKHH2 SLC25A5 MYO10 SLC24A2 MAPK8IP2 SLC22A4 GPR37L1 ALG3 CD63 TMA7 MT-CO2 NDUFAB1 ACTG1 TRAPPC1 TRIB2 SERF2 GABARAPL1 YWHAG TENM1 LPPR4 DDAH1 LMO2 SOX6 ACTR1A OLFM1 RHBDD2 LRP1B RPS2 COMTD1 HMGCR YWHAB RAN NCAM2 KIF3C TCEB1 STMN4 COL9A1 DYNLT3 THOC7 DSTN MAL2 NDUFB10 ARL6IP1 ASCL1 POLR2I GPR56 RCAN2 PEA15 PLSCR1 ENPP2 MRPS21 NFIA TSPYL1 HINT1 RPL32 UBC CCDC85B SMS CST3 RP11-632C17__A.1 RBMX2P3 TANC1 BSN OXCT1 GALNT14 TPT1 OCIAD1 COX6C RTN3 NEUROD2 RPL3 NUAK1 RPS28 PPAP2B RPL35 SDCBP SCAND1 PTMA FGF2 CFL1 BLVRB ATP5G1 GAD1 RSL24D1 PPP2CA COX7A2 MARCKSL1 PSAP SSTR2 RPL41 GPCPD1 ATP1A3 RANBP1 GNG3 ELMO1 MBP SNCB TRMT112 RPL8 THBS4 MT1M CYFIP2 HDLBP ZNF208 CALM2 NDRG2 HRK RPS26 APOL6 APLP1 NRCAM S100A16 CCND1 APOLD1 ARF5 TUBB3 NUDT21 IDS PCDHGA5 PCDHGA6 PCDHGA10 DNAJC21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "oligodendrocyte precursor cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: VCAN PTPRZ1 SPARCL1 GPM6A SOX6 PSAP CNTN1 MT-ATP6 PGRMC1 SCD5 MT-CO1 GPNMB MAGEH1 MT-CO2 SLC22A17 TBC1D15 AIF1L DNER SLC39A10 ID2 NTNG1 BAALC ENO1 TXNIP MTATP6P1 NEGR1 ACTB KIF21A GRIK1 MTPN ASAP1 MAPKAPK2 B3GNT1 UBE2QL1 APOD COL9A1 GYG1 SYT11 SPCS2 RTN1 PRRX1 THSD7A HS6ST3 CHL1 NR1I3 ENSA TSPAN7 PRKACB ZCCHC24 NFIA RPS4X ETV5 THY1 NCAM2 SLC1A2 SARAF WWTR1 COL20A1 GHITM NDRG2 ZFP36L1 NELL1 HIF3A KCNA5 SKP1 SMIM13 NDFIP1 SCOC ALDOC HMP19 RNF11 HTRA1 RAB3IP RPL13A PMP2 HSP90AA1 CCDC25 OAZ1 CKB KLHL5 SCN1A RPL13 SLCO2A1 TF PGK1 OLIG2 COL11A1 THYN1 TMSB4X CNP SLIT1 QKI PRDX1 TENM1 PHYHIPL SERINC3 NRCAM ZFHX4 SLC17A8 SYTL2 BCAS1 LANCL1 EDIL3 PPIA RPL31 TUBA1A MT-ND1 ETV1 MT-ND3 DISC1 RP11-219A15.1 GTF2H2C_2 PCDHGA6 PCDHGA5 PCDHGA10\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "oligodendrocyte precursor cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: BCAS1 PLP1 RTN4 DYNLL1 RAB3B MBP SYTL2 COL9A1 OLIG1 MAPK1 PTGDS SOX10 TMCC3 MT-CYB PMP2 ZBTB20 MSMO1 PFN2 SMOC1 MT-CO2 GPR17 TBC1D15 TF AC011043.1 FRMD4B TUBB4A ATOX1 KIF21A MAP1B RPS12 ADAM33 NDUFB2 NCAM2 DPP6 PTPRZ1 SNX22 ALCAM BIRC5 TIMP2 RP11-111M22.2 NKX2-2 SLIT1 PCDH15 TMSB4X SLC7A2 QKI ERBB3 YWHAG APLP2 MYL6 SARAF SNRPN RPL15 FGF2 PODXL TEX2 CENPU EDIL3 SOX2 ARFGAP2 ARL2BP COX6C MTPN TUBA1A ITM2B SOX6 POLR2L MT-CO3 SYT11 TMSB10 SLC24A2 EIF4A2 DCC TPGS2 TMEM88B TOPORS-AS1 EBF4 SCD C1QL1 LHFPL3 THY1 DGUOK ST18 PPP2R2B FGF12 VEGFA CFH MIR6723 EEF1A2 NFIA MT-CO1 SSTR2 PCDHGA6 PCDHGA10 PCDHGA5\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "oligodendrocyte precursor cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: VCAN PTPRZ1 RAB3B PSAP CADM2 MT-CO3 CLSTN1 GPM6A PDGFRA SNAP25 SKP1 ATP1A1 MT-CO2 TCEB2 ALCAM SLC25A4 SLC9A9 MEGF11 HTRA1 QKI ALDOC EDIL3 SLC1A3 SCD5 RAB6A PCDHGA5 KLHL5 SLC6A1 MT-ND2 MT-ATP6 OLIG2 ZBTB20 MARCKS ZNF385D TBC1D15 APOD PEX5L EPHB1 UBE2V2 ATP6V0B NPPB BEX4 BAALC APOL6 METTL7A NFIA BASP1 B3GNT7 PHYHIPL SLC1A2 SUCLA2 VDAC2 GNB1 TRIM47 CDC37 S100A16 KIF21A PPIA RGCC ANGPTL2 RELL1 NAPA ARPC4 HSP90AA1 VAMP2 LRP1B EHD3 NAP1L5 AURKAIP1 NKAIN4 VPS35 INHBA PTMA MAGED2 ATP6V1C1 ARF3 TMEM132C HIF3A SMOC1 PCDH15 NRCAM KCNA2 KLC1 BRINP3 KCNA1 PRKAR1A FIGN DPYSL2 NDRG2 EIF4A2 VDAC3 RAP2A SOX6 ATP1B2 NDUFB10 PRKACB ID2 THY1 CSPG4 THSD7A STMN3 RNF11 ATP2A2 PPAPDC1A ERBB3 PCDH17 HEPN1 BCAS1 CTDSP1 PALD1 B2M NCKAP5 SPARCL1 PAQR9 UBB GPR56 CPE CMAHP TRIM60P17 MT1E TCEB1 ITPR2 FABP5 IGSF21 RAB31 INHBB PRDX3 COL20A1 TMEM35 PRTG MRPS21 ATP6V0E2 BCKDHB CMTM5 MT-ND5 MTMR9LP PIP5K1B MTRNR2L12 FAM69C CNTN1 PCDHA4 GOT2 PGRMC1 DISC1 RPL37A ENOPH1 TMTC4 ITFG1 TCEAL7 VEGFA RTN3 ARF1 CREB5 RP11-111M22.2 ZCCHC24 YAF2 DYNLL1 TMEM258 GLUL LHFPL3 FAIM2 ELAVL4 SLC24A2 PLEKHD1 APOLD1 RPL13 RP11-219A15.1 RPL18A GTF2H2C_2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "oligodendrocyte precursor cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: TBC1D15 NFIA VEGFA ZBTB20 B3GNT7 PTPRZ1 WLS OLIG1 SEPP1 CA10 SCD5 ASAP1 FERMT1 WSB2 CTSD ZCCHC24 SNAP25 HNRNPA1P40 EPS8 THY1 HMP19 MT3 ACTB RPL3 MEGF11 TXNIP FKBP8 CHL1 CABP1 ACTG1 ITM2C PLD5 SYT11 PCSK1 DYNLL2 PLEKHH2 DNER HIST1H2AC PGRMC1 SNX10 PROM1 SLC7A5 MT-CO2 CHADL ADAMTS17 SKP1 RANBP1 EIF4A2 ENSA RPL41 BAALC FAIM2 MTG1 SOX6 KLHL5 BNIP3 SHISA8 PCDH17 VCAN NDUFA8 SLC25A6 PMP2 HEG1 STMN4 SRP14 DUSP6 RAB6A C1QL1 SPOCK1 MT-CYB OLIG2 RTN1 ADD2 APOL6 HMGCR ATP5B EDIL3 UHMK1 HSP90AA1 MYOM1 NOTCH1 SPP1 GSG1L ATP6V0E2 SUB1 GAD1 SEPW1 PCBP1 PCDHGA10 NDRG2 PLOD2 SSBP3 MT-CO3 SLC9A9 TOMM34 RAB31 FGFR3 CREB5 COL4A3 MT-ND4 PSAP RPL39 ERBB3 CFH NSF ZNF385D SYTL2 RAB3B TUBD1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "oligodendrocyte precursor cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: VCAN QKI MARCKS VEGFA PTPRZ1 SLC1A2 PDGFRA OLIG1 DLL3 HTRA1 DUSP6 MTRNR2L12 MT-CO3 PCDH17 SRP14 RPL35 CST3 APOD GFAP THY1 INHBA RAB3B SYTL2 KIAA1024 CDK5R1 FAM84A DNAH11 SYN1 NRCAM TCN2 CLSTN1 NFIA ZCCHC24 GALK1 MT3 EHD3 SHC4 SCAMP5 GPR17 RHOA PHYHIPL MSMO1 FERMT1 DDAH1 PCDH15 SLC40A1 OLFM1 CFL1 HSP90AA1 SOX10 ACTG1 TMEM130 MPI RAB3IP MORF4L2 MT-ND2 CHL1 SLC24A2 PGM2L1 ALCAM CNTNAP5 LMBRD2 MT-CO1 ENO1 DGKG CD9 ITGB4 DNM3 LINGO1 SLC22A17 RPL12 TMEM179B C18ORF21 PPIA RHOB FGF12 CTU2 BCL6 CADM2 TRIM37 SMOC1 RPL8 BEX5 SNX3 RPL13A RPL41 ATP5I EID1 PRNP PCDH19 C1QL1 GFRA1 MORF4L1 ATP6AP2 DPP6 SPOCK1 GABARAPL1 SELT AP2M1 SEPP1 APBB1 TOMM7 ASIC4 ITM2B COX6A1 PCDHGA6 ATP2B4 STMN1 PRRX1 MYRF SPARCL1 ALDOC HIF3A PGRMC1 RAB9A TCEAL7 PMP2 WFS1 SNAP25 ANXA6 MBP TBC1D15 GAPDH YIPF1 NPTX2 RAMP1 DNAJC6 RPL15 MT-ATP6 ZBTB20 MTRNR2L8 DLC1 GPR98 SERF2 B2M OR6D1P\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "oligodendrocyte precursor cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SLC1A3 SLC1A2 SPARCL1 CFH PTPRZ1 NFIA MTRNR2L1 MTRNR2L12 ITPR2 MT3 ID4 MT-CO1 APOE SYT17 CKB ALCAM ZNF385D RAB3B SYTL2 SNAP25 CPE PSMC3 PLEKHH2 FAM84A MAGED1 ARL1 GNB1 VEGFA PRNP RPL8 SLC35B1 HIF3A ZBTB20 CLIP3 SDC2 RAB13 VAPB METTL7A NPAS3 GHITM KCNA2 GPM6A RP11-111M22.2 SOX2 BCL6 PAPLN CSDE1 ZNF423 ATP1A2 INHBB NDRG2 RORB PLP1 SCD5 SLC9A6 PHYHIP COL9A2 SERPINI1 GUK1 GAPDH HMGCR LUZP2 OPCML SUB1 TUBB2B CEND1 GPR132 SDC4 MT-ND4L MT1E SLC22A17 DGKG STOX1 APOD ACTG1 CST3 ZFHX4 PCDH15 CLU FAM198B CAPZB RLIM TSC22D4 ATPAF1 GLUL FAM163B PSMB7 RAB3IP RP11-139K1.2 ZCCHC24 MTRNR2L6 ANGPTL4 ATP2B4 RPS28 TUBA1B TCEA2 FAM111A MRVI1 ACACB PDGFRB MT-ATP6 TSPYL1 QKI SCN1A SPTBN1 MT1X ZFAND5 SKP1 NR1I3 PPIA RPL21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "oligodendrocyte precursor cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-ND4 MT-ND3 MT-CO2 MBP PCDHGA5 TXNIP PTPRZ1 MT-CO1 VCAN EVI2A NDUFA12 SPP1 ST18 MT-ND2 MT-ATP6 LRP2 ZBTB20 EDIL3 KCNJ10 SMOC1 APOLD1 PDE1C RPL35 PLP1 PSAP HEY1 SERPINE2 ATP1A2 AP3S1 HHIP ITM2B GPR37 MT3 TMEM100 MGST3 SOX6 SLC9A9 PCDH19 INPP5F TLE4 MFSD6 ATP1A1 TMSB4X CSPG4 OLA1 COX4I1 CADM3 LANCL1 UBA52 CPE TSC22D4 HSPA2 CACNB1 SCN1A SPOCK2 ATP5G2 GSTP1 KIF19 FGF12 MFN2 CNIH3 CLTC REPS2 B3GALT2 CAPZB SNX22 STMN1 SEZ6L2 RP11-219A15.1 SRP14 PTGDS MT1X CHST8 PGM2L1 TUBA1A DGKG SNCA SLC22A17 MT-CYB NDRG2 NKX2-2 SERP2 FAIM2 C18ORF32 SH3BGRL3 HPRT1 MTCH1 ARL8A PPP1CB CLMN PKM ZFP36L1 AP1S2 TIMP3 OPA1 ANLN TMEM151A DISC1 BEX5 MARCKS GRAMD3 DUSP6 ERMN CTNNA3 RAPGEF5 SCD5 PTMA PDP1 RPL37A CLDND1 ANXA4 ZCCHC24 GMFB PLD5 HEPACAM HIST1H2AC GRIK1 GPRC5B HTRA1 RASGRF1 EIF4G2 CXXC4 MAST3 CYC1 ATP5E MT-CO3 MAL OLIG2 CLTA SCD MYL6 CX3CL1 HOMER1 NDUFAB1 PEX5L RPL41 SPOCK3 ACTB TTYH2 TOMM20 MAP1B TKT PIP4K2A MT-ND4L PID1 MARCKSL1 HHATL CREB5 QKI CNTN1 LGALS1 CALM1 DNAJC6 PGK1 CLSTN1 UBB SEPP1 PPP1R14A ZMAT2 FTL TSPYL5 RTN3 PCDHB4 ATP1B1 APLP2 FAM127A COL20A1 SEMA5A AES RPS3A ASPA GAPDH RSL24D1 SULF2 SLC1A2 COX6B1 ARL8B PLEKHD1 RPL13A GHITM RPL17 RPL17-C18ORF32\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "oligodendrocyte precursor cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RAB3IP PTPRZ1 FTH1 GAPDH PSAP CADM2 NGFRAP1 VEGFA ZBTB20 SERPINE2 ACTB TCEAL2 MARCKSL1 RANBP3L ENO1 CREB5 TUBB ATP1A3 RPL13 CST3 APP MT1X MTRNR2L12 ITM2C VCAN ARL6IP5 MT2A CLU SCD5 DNAJC21 NR1I3 VAMP2 AZIN1 ATP6V0B CADM3 SCN1A RPS6 ELAVL2 OR6D1P MRPL55 RASGRF1 ALDOC COX7A1 SHISA6 LUZP2 ATP5J2 SERP2 TIMP3 MT-ND4 RTN3 NPAS3 VDAC3 EIF1 MT-ND4L PTMA RP11-632C17__A.1 PREX2 RPL35 FBLN2 CHST11 MT-ND2 AIMP2 ATP5G3 STMN1 TSPYL4 RPS4X GAD1 PIN1 SEZ6L PTN LINC00116 TMEM255A TMEM158 UQCR10 TCEB2 KLC2 STXBP1 VWA1 ETV1 RAN TMEM200C NDUFA11 SYTL2 GRIN2A BEX5 CCDC85B DIRAS2 PCDH17 COX8A PCDH15 DUSP1 MT3 TMEM59L EDIL3 QKI SPATA13 HSPE1 LDHB MORF4L1 YAF2 SSPN ASIC4 BCL6 LMO2 GPM6A SRP9 GDI1 AP1S1 CKB FABP5 DNM3 CLSTN2 SPARC ID2 MTCH1 MEGF11 RTN4 KLC1 HOMER3 ANAPC11 ALDH1A3 NPTXR ADM APOD INPP5F DCC RPS28 BHLHE40 SMOC1 SOX6 PPIA CALM3 ADAMTS9 MT-CO2 CLDND1 HOMER1 PLOD2 AP2M1 ATP5A1 MT-CO1 CSPG4 BCAP31 RPL38 HTRA1 ZCCHC24 OLFM2 DGUOK MT-CO3 NFIA ATP5G2 SSTR2 ATP6V0E2 SYT4 SCOC CPE GALK1 MTRNR2L8 RP11-20I23.1 RNASEK-C17ORF49 ATP6V0C COX6A1 RPL13A MIF TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "oligodendrocyte precursor cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PTPRZ1 CFH TCEB2 SLC1A3 CCDC168 RPL21 BGN MT-CO3 MT-CO1 ATXN10 MT-ND3 SNAP25 FERMT1 RPS6 STXBP1 ADTRP EDNRB ECM1 CNTN1 CCDC158 RPS3A DNER TENM1 CHL1 TSPAN7 MYOM1 C19ORF10 CHRNA2 PREX2 VCAN BCL6 NDUFS5 FKBP8 CACNA2D2 HN1 ARPP19 NDUFB2 COQ10B SLC6A1 MRPS21 PRDM16 ZFP36L1 SOD1 CST3 NDUFB1 TPI1 UBC GPRC5B ETV5 TXNDC17 COL9A1 BCAS2 TLE4 NFIA KIT MT2A ARF5 SEZ6L SPOCK1 APOD SEMA5A COL11A1 HMGB1P8 MT-ND1 PIK3R1 PGRMC1 CPE QKI AES VDAC3 ACSS1 HTRA1 MT-ATP6 B3GALT2 UQCRC2 PLEKHD1 BCAS1 NCAM2 MT-CO2 TSC22D1 PRKCE NRCAM HNRNPH2 CLIP3 CD9 OR6D1P GTF2H2C_2 RAB3B SYTL2 ZNF385D RPL7 PCDHGA6 PCDHGA10 PCDHGA5\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "oligodendrocyte precursor cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PTPRZ1 QKI TF RPL41 VCAN RTN1 SMOC1 ZBTB20 OLIG2 NR1I3 MT-ND4 SNAP25 COL4A3 RAB6A SCG2 RPL21 ITM2B TMSB4X C1QL1 ZFAND5 BNIP3 ARHGAP29 AIF1L JUN PREPL KLC1 SCN1A OLIG1 SCD5 ZNF536 ATP6V0B CRISPLD2 MARCKS PSAP ATP6AP1 ATP5B SLC6A1 OLFM2 ATP2B4 C7ORF50 ZFHX4 MAP1B FAM149B1 HTRA1 CAMK2N2 MT-CO1 JUND PTMA BASP1 TMA7 DGKG SLC1A2 RP11-111M22.2 NKAIN4 ATP5J SARAF GOLIM4 DNAJC5 LHFPL3 EIF4A2 MDH1 SFRP1 TMEM200C GNG12 ERBB3 FSTL5 EIF1AX CHADL MTCH1 GNB1 COL9A1 NFIA MTRNR2L12 FAM3C ACTB SSPN HSP90AB1 NTNG1 LRP4 UBE2V2 ATP5O RPS27A BEX1 MT-CO3 GPR56 SNX22 MEGF11 PTN SEZ6L GPRC5B ITGB5 OR6D1P GHITM IDS\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "oligodendrocyte precursor cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: TBC1D15 PTPRZ1 OLFM2 SNAP25 ATP6V0E2 NXPH1 FERMT1 MEGF11 ZBTB20 SLC22A17 NFIA ZNF365 SCAMP5 SCD5 CALM2 SCN1A NDFIP1 ERH ATP13A4 NAP1L3 TUBA1A SOX6 IGFBP5 RGS12 DDAH1 PKM DNAJA1 F3 PTN PCDHA4 MARCKS RP11-111M22.2 PPIH SLC24A2 TLE4 COL9A1 ITM2C OLA1 TMEM123 HOMER1 SLC7A1 PTGDS SEMA5A MYO10 TSPAN7 SLC1A3 SOX10 TPGS2 VCAN MT-ND4 WBP2 REEP5 RPS28 ANO3 MCMDC2 MT-ND4L CLSTN1 NDUFAF2 TRIL CIAPIN1 PFN2 CD63 RAB3IP PNMA2 ALCAM PSMC3 OLIG2 PHYHIPL SMAP2 ATP6AP2 CHST11 ACLY NR1I3 ZCCHC24 PVRL1 DGKG SELT METTL23 SELM SERF2 SLC40A1 QKI HSP90AA1 RTN1 TMOD2 LUZP2 CFH RPL21 SYTL2 RAB3B ZNF385D AC244489.1 PPIA PCDHGA6 PCDHGA5 PCDHGA10\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "oligodendrocyte precursor cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: VEGFA RAB3B MT-CO1 ZBTB20 MT-ND4 VCAN PTPRZ1 SNAP25 APOD HES1 PCDH15 DNAH11 ATP1A2 SPARCL1 MT-ND3 FARSA ATP1B2 TPPP GNG2 POLD1 C19ORF70 MT-CO3 OAT MEGF11 CTSD SLC1A3 CRTAC1 DOCK10 HTRA1 LINGO1 MT1E CHST9 UQCRB CAMK2D CAMK4 AP3S1 SEPP1 MBP SLC38A3 FAM19A2 SCD5 SHISA6 MT-ATP6 GPNMB TLE4 NDUFA13 SLC22A17 NNAT TUBB3 PCDH17 ATP2B4 PPAP2B PROM1 CPE RTN3 CDHR1 RPL23A GPR17 SLC25A22 DUSP1 UBE2L6 PTN COL20A1 CLSTN1 TMEM144 MTATP6P1 MRPL20 C19ORF53 HEPN1 RPL13 TMEM59L UBA52 MT2A ID2 SPOCK1 CALCRL NOTCH1 NFIA VAMP2 RAB3IP OR6D1P LUZP2 TRIB2 CLSTN2 OPCML PAM PGRMC1 TXNIP UBC EDF1 ATP5G3 NDUFA5 ADM RPL10A CSPG4 TUBA1A HSP90AA1 PVRL1 HSD17B14 MRAS EIF1B BAI2 MT-CO2 MT-CYB S100B MTRNR2L1 ENO2 PLEKHH2 PRKACB PHYHIPL RPL11 PLIN2 COL9A1 TSPAN7 CABP1 GDI1 RPS5 GSTT1 ETFB TBC1D15 DNAJC21 RPL41 C11ORF31 MTRNR2L6 NR1I3 CYB5R3\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "oligodendrocyte precursor cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PTPRZ1 COL9A1 VCAN ZFP36L1 MT-CO2 MAP2K2 B2M ARFGAP2 MT-ND4 SHC4 RGS12 GPR56 MT-ND2 TXNIP ZBTB20 MT-ND1 CHST11 KCNJ10 ESCO2 OLIG2 LAMTOR2 ERH SOX10 LMO4 SCD SPI1 SEMA5A GPR37L1 PRKACB CEND1 MT-CO3 SRP14 PTMA CLU COL9A2 TMEM200C ASAP1 ARL2BP ALDH1L1 IDI1 PPAP2B OLFM2 SNAP25 BAALC MTRNR2L12 RPL15 MT-CYB HTRA1 VAMP2 CSRP1 TUBB4B DUSP1 SLC25A5 OPCML FIS1 NPTX2 MPC2 DNM3 GSTO1 LHFPL3 NAA38 COQ10B COL20A1 SELT GNG3 SOX6 GPX4 SCD5 RAB31 ATP6V0B CST3 ZCCHC24 PCDHB4 MT-CO1 POMP APOD ARPC5L ARF1 NFIA MTCH1 FIBIN FXYD6 LINC01296 EDIL3 DNER CNRIP1 CADM2 SPOCK1 CLIP3 VDAC3 MTRNR2L8 ERBB3 SEZ6L ZFHX4 BEX1 YWHAB C1ORF233 CLSTN1 PMP2 CMTM5 SPOCK2 PDGFRB CRIM1 S100B SULF2 SGCZ KIT TCEAL3 GSTP1 FIBP GDE1 RPS15 APBB1 PSAP TUBD1 CHST8 SPATA13 FIGN REEP2 RPS28 PPP2R4 RHEB RPS6 PLTP APP FBLN2 TANC1 PCDH15 GABARAP RELN BIRC5 SYTL2 ZNF385D RAB3B DNAJC21 TBC1D15 PCDHGA6 PCDHGA5 PCDHGA10\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "oligodendrocyte precursor cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: VEGFA CCK GPM6A RPL8 FOS TALDO1 CYFIP2 GPCPD1 RAB3IP RAB3B NFIA UBC ZCCHC24 CD99L2 ZFP36 PLOD2 NAPB APOL6 PNMAL2 MRAS ZFP36L1 CALM2 TRIB2 HIF3A PLCXD2 NCALD DEXI GHITM RPS4X CRIM1 ADM VCAN NDRG4 AP2M1 PTPRZ1 RAB6A CLU MT-ATP6 RPL10A TRIM47 PNMA2 AKAP12 MZT2B NRCAM SOX21 RPL13 SH3BGRL2 WIPF1 LRP1B MAPK1 GADD45B SLC1A2 CST3 SLC2A1 DPYSL2 ID2 POLR2J CDHR1 FREM2 ALDOC ATP6V0E2 MARCKS TENM1 COX6B1 NUDT21 CEND1 ATP5G3 RP11-111M22.2 EDIL3 PPDPF ZBTB18 UCHL1 MTRNR2L1 MT2A GPX4 STMN1 CREB5 DKK3 OAZ1 PTN BCHE FAM84A TANC1 BSG COL20A1 GRIK1 NEK7 NDUFB8 JUNB GRIN2A SERPINE2 NEGR1 RTN3 ARHGAP35 PINK1 ACOT7 MAPKAPK2 BHLHE40 CAMK2N2 MT-ND2 RPL21 MT1X CTC-575D19.1 RPL37A TKT ZMAT2 TMEM147 PNKD TMEM59L EPB41L3 ISG15 ATP6V1F TMEM132C TMSB10 SPARCL1 CLTC COPG1 CLSTN1 FAIM2 DYNLL1 APOD SEZ6L FAT3 SEC61G TPI1 C1QL1 HEPACAM MT-CYB OR6D1P SNCA TM2D3 B2M BSCL2 MTRNR2L6 MT-CO1 MIR6723 TBC1D15 AC244489.1 PCDHGA10 PCDHGA6 PCDHGA5\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "oligodendrocyte precursor cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 APLP1 MT-CO2 NFIA PTGDS TMEM144 TF CLDND1 MBP MT-CO3 CLDN11 PLEKHD1 RP11-111M22.2 SEMA5A WSCD1 DPP6 CLU ATP5G2 SPOCK1 ACTG1 ABCA8 ANAPC11 ST18 MTRNR2L12 PEBP1 FAM107B ACTB PJA2 PSAP RTN4 NR1I3 ZBTB20 DNER SPP1 SLC24A2 RPL3 CD9 RPS6 ELMO1 VCAN VEGFA DPYSL2 ENPP2 TTYH2 HTRA1 QKI GPRC5B MGST3 HIF3A PLEKHH2 SMOC1 SYTL2 RAB3B MT-ND3 MRPL51 ZCCHC24 GGT5 PCDHB4 CRYAB TXNIP SQLE FGF12 TNFRSF11B PIK3R1 RPL26 ANKRD18A FTL TUBB4A FTH1 TMEM130 CPE CREB5 AZGP1 LUZP2 PPDPF TMEM63A PIEZO1 TMA7 SERINC3 SOX2 NKX2-2 GPX4 TUBA1B MT1X DNM3 RPL37A SLC6A1 PPP2R2B APOD REPS2 ERBB3 TMSB4X NOTCH1 CSPG4 RHOB JUND RPL38 NRCAM NKX6-2 NDFIP1 PPARGC1A PEX5L KIF21A SERINC1 BASP1 NARS CNP MRPL33 DHCR24 PRKACB MT-ND2 CRKL GAPDH MT-ND5 CLTC SEPP1 ATP6V0E2 RPL13 AZIN1 SKP1 GPR37 ATP5G3 NME1 IGSF21 CTBP1 SUSD4 RAMP1 HSP90AB1 RPL35 YWHAQ DYNLRB1 VWA1 YIPF3 ATP5E SOD1 ARHGDIA ZNF343 HS6ST3 STXBP6 PSMD12 SULF2 ATRN CLMN RPS10 PPIA PIEZO2 HEPACAM TERF2IP ARL2BP PAFAH1B2 GUK1 ENO1 MAPRE2 CXXC4 MTRNR2L8 SPARC PPP2CB MFN2 PCDHB10 NCKAP5 MEGF10 BRINP3 SCD5 C14ORF2 FA2H KLHL1 DUSP6 AGT GAD1 RPL23A WASL MYO10 RPL21 CDK17 TPT1 PIN1 EDIL3 ANLN MT-ND4 SSTR2 CTSD SGCD OR6D1P RPL17-C18ORF32 IDS C18ORF32 RNASEK-C17ORF49 GTF2H2C_2 DNAJC21 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "oligodendrocyte precursor cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: OLIG1 ZBTB20 PTPRZ1 HIF3A TBC1D15 SYTL2 RAB3B APOD VCAN MT2A CST3 CREB5 ATP2C2 HTRA1 SNAP25 MTRNR2L12 GPR56 MT-CO1 MRAS CLU ATP2B4 MTRNR2L8 TALDO1 GAPDH DNAJB6 LMO4 MFN2 FA2H HSP90AA1 PSAP SEMA5A SLC7A5 ETV1 CPE NCALD CDC14A SUMO2 RPL37A ASAP1 SCAND1 DUSP6 MT-ND2 CTNND2 CSPG4 RGS12 INSIG1 SLC22A17 MARCKSL1 MT-CO2 SOX6 TSPYL4 SOX10 RAB2A ATP6V1C1 ACTG1 EDIL3 CA10 CLIP3 PLEKHH2 SCD5 CMTM5 MT-ND4 PSMA7 RP11-139K1.2 MT-CYB BCL6 TSPYL1 FAM134A UBE2E3 CHGB KIAA1211 RAD23B ATP5I CDH13 COL11A1 NAT8L COMMD6 EIF4A2 QKI C6ORF1 GNAQ NDFIP1 SLC2A1 NDUFS6 RAMP1 TLE4 SIRPA KLC1 GPRC5B SLC6A1 CSDE1 PNP SPARCL1 FGFR3 PSMD8 RTN3 LUZP2 FKBP4 PAFAH1B2 SMOC1 ATP1A2 STMN1 UBA1 ARPP19 ERBB3 DDR2 KCNK2 SLC40A1 SOX2 ELAVL4 HEPN1 ALDOC ITPR2 MT-ATP6 ATP2A2 SLC1A2 SULF2 EIF1 MRPL52 CALM2 OLIG2 RPL17 CTD-2026G6.3 RPL17-C18ORF32 NR1I3 GABARAP MIF C3\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "oligodendrocyte precursor cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MTRNR2L1 MT-ND4 MT-ATP6 SCD5 MT-CO1 RAB3B MT-CO2 PDGFRA PPAP2B MT-CO3 RP11-111M22.2 ZBTB20 MT-CYB MTATP6P1 MT-ND5 APOD RAB11A CHL1 SOX6 SNAP25 PTPRZ1 TUBB2B RAB31 CLSTN1 PRNP SCOC SULF2 RNASEK-C17ORF49 PBX3 GPX4 SFRP1 ZFP36L2 PAFAH1B2 HEY1 RAB40B ATP6V1G1 DUSP4 RIN3 RPL35 CALM2 RPL10A VCAN TMEM130 TRIB2 BLOC1S1 NRCAM SERPINE2 BIRC5 SEPW1 ENPP2 GNG12 PROM1 ETFB MAP4 DPP6 SPOCK3 ATP6V1E1 MAF FERMT1 SLC1A3 TXNIP EIF1AX TENM1 LUZP2 ATP2A2 CHST8 MT-ND2 CADM3 SCN1A ETV5 CDCA7L POLR2M TOMM20 TUBB2A IGSF21 SOX2 CKB SPOCK1 SHARPIN CAMK2G PCDH19 NTN4 OLFM2 SNX22 RPL36A ERH NFIA CREB5 COL20A1 LHFPL3 COX6C TLE4 BTBD10 C1QL2 GABARAPL2 CA8 CNP GPR56 RNF152 DYNLL1 ZFHX4 CDC37 MTRNR2L12 MTRNR2L6 DISC1 MTRNR2L8 ALDOA RP11-219A15.1 RPS10 HNRNPA1P40 PCDHGA6 PCDHGA5 PCDHGA10\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "oligodendrocyte precursor cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: VCAN PTPRZ1 PCDH17 PTN OLIG1 MTRNR2L12 SNAP25 ERBB3 CLU METTL7A SCD5 RAB3IP SCN1A MT-CO2 APOD MT-ND4 SPARCL1 RP11-111M22.2 NFIA VEGFA MT-CO1 HEPACAM TRIB2 FAM84B NDUFS5 SELT CTSD TIMP3 ATP5G3 TUBB2B MORF4L1 ACTG1 MT-ATP6 OLIG2 RAB31 COL9A1 PTPRS PPAPDC1A ENO1 YWHAZ PTPRN2 PPM1A FAM111A FKBP8 ADAMTS1 NDRG4 GPR56 SLC38A1 TSPAN7 RHOA MTRNR2L8 RAB4A FAM134A DNER KCNAB1 ACTB FIGN ASCL1 FASN PREX2 PGK1 PPAP2B ATP13A4 PRKACB SLC1A2 CRISPLD2 REPS2 ATP2B4 UQCRB AKNAD1 WNT5A SPP1 SLC6A1 S100B KIF21A CST3 NAT8L ARL6IP1 DUSP6 ITM2B NRCAM RPL13 KRAS ID2 PHYHIPL PID1 WIPF1 CFL1 BCL6 NAP1L3 CCT5 PGAM1 CD9 PLEKHH2 ALDOC HTRA1 DNAJC21 TBC1D15 KLC1 PCDHGA10 PCDHGA6 PCDHGA5\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "oligodendrocyte precursor cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 NFIA SCD5 GPRC5B CNP MTRNR2L12 TF MT-CO2 MT-CYB MTRNR2L1 ASIC4 MT-CO1 SMOC1 POLR2I SCG2 TMEM144 GPR37 MT-ND2 GPNMB PTPRZ1 GPR37L1 MT-ND1 TBC1D15 RPL35 FAM107B ZNF536 BEX4 CHST8 MT-ND4 MYO10 PLCXD2 CDK5R1 CHCHD2 SFRP1 OST4 RABAC1 ACTG1 SCAND1 FSCN1 PTGDS GAPDH PTPRN2 PCSK5 BAI2 QKI RGCC KCNAB1 MT-CO3 PSD3 NDFIP1 COL9A2 PET100 GPM6A RPL23A COX4I1 FOS PCDHGA5 LIN7B FAM134A ITM2B GNB1 MAP7D1 INSIG1 TGOLN2 TXNIP ZCCHC24 CRYAB ARPP19 SOX4 MOBP ATP5I TMCC3 SLC22A17 ATP1A2 PPP3CA EDIL3 SEPT4 LHFPL3 ADSS CPE YWHAQ VCAN HIF3A COX5B NDFIP2 C6ORF1 HSP90AB1 EVI2A TMEM63A MBP GYG1 RPS28 MLLT11 CALM1 DPYSL2 PSMB7 BAALC GRIK1 TMEM123 LRRC59 CORO1B ATP1A1 APBB1 APP MYRF RPL13 IFI35 FXYD6 MTRNR2L8 PROX1 SERPINE2 SCD CRIM1 MT-ND3 RPL11 RPL26 RPL36A RTN3 EPS8 OLFM2 GFAP COPS8 ETFB SEPW1 TMA7 CLMN TUBD1 CADM2 STMN1 SNRPE NUDT4 MTRNR2L6 GTF2H2C_2 RP11-219A15.1 HNRNPA1P40\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "oligodendrocyte precursor cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PTPRZ1 QKI MT-ND3 PTGDS SYT11 APOE CD63 SYTL2 NACC2 SLC1A3 GUK1 CHN1 EML3 MT-ND4 MRVI1 COL9A2 TRIB2 FGFR3 RAB3IP GPR98 SCD5 MT-CO3 TSPAN7 MAPK1 BCL6 CSPG4 RAP2C THYN1 NDUFS5 LINGO1 RTN1 SHISA6 BAD SUMO2 RAB3A GAPDH SLCO1C1 LSR ITM2B C6ORF1 OLFM2 CIAPIN1 MGST3 PPP1CB PMP2 MT-CYB PDP1 MARCKS GNG2 INSIG1 MT-CO1 GPRC5B DCLK1 PNMA1 EIF1AX ENC1 RPL38 COA3 HILPDA SYT4 MAFB SPARCL1 RTN4 CDC37 MAP1LC3A RP11-20I23.1 TRIM36 STXBP1 ACLY FTH1 COX6B1 PJA2 BRK1 CLSTN1 C19ORF53 MAST3 RHOB MYEOV2 SIRPA FGF2 ALDOC OAT MRPL15 HEPACAM IDH3A SULT4A1 ABHD14A PRKCB PPA1 TMEM123 BEX1 FKBP8 TMEM160 ELAVL4 ID2 CLU POLR2J GSTT1 CAB39 RPL26 BCAP31 PHYHIPL GSK3A EDIL3 METTL7A SMIM12 PPAP2B SLC39A12 COL20A1 CYC1 FAM3C GJB6 SLC6A1 DNER AGT ATP6V0C ID4 NCBP2-AS2 MT-ATP6 PAMR1 SLC35B1 SLC1A2 GRIN1 GLUL MT-CO2 PFKP MT3 MT1E VAMP2 NDRG4 MAP2K2 CACNB1 COL15A1 UBC PGRMC1 CHI3L1 MT-ND4L MAPK8IP2 SELM DPYSL2 GJA1 HSP90AA1 NDUFA12 NPTXR GDI1 TUBB3 RPS15 RPL17 RPL17-C18ORF32 IDS TUBB RPL7\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "oligodendrocyte precursor cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PTPRZ1 SCD5 RAB3B HTRA1 VCAN TF OLIG2 MARCKS OCIAD1 MT-CO1 MTATP6P1 OLIG1 SPOCK1 CNTN1 ZBTB20 MT-ATP6 PCDHA10 ALDOC RP11-111M22.2 TUBB2B EDIL3 PCDHGA10 BIRC5 ZNF385D NFIA SLC6A1 TIMP2 SYT11 MT-ND3 MT-ND1 CIAPIN1 PLEKHH2 MTRNR2L1 NDUFB7 SPTBN1 TLE4 GPR17 KLHL5 LMO2 MT-ND4 HSP90AB1 MTRNR2L12 PCDH15 LHFPL3 LANCL1 SLC22A17 COL20A1 RPL35 FIGN GPM6A DNER FERMT1 SEMA5A KCNA2 ATP1B2 DLL3 MT-CO3 SLC1A3 PGK1 BSCL2 NDUFA5 LUZP2 NCAM2 PPDPF RPL35P6 MAL IDS SOX6 SERF2 AEBP1 DPP6 CDH13 TMEM14A COPE RRAGA MZT2B PTMA PTGES3 ACTB CD99L2 RPL21 PREPL PROX1 PPAPDC1A SLC17A7 TPPP GPNMB PDE1C SEPW1 EML3 PREX2 NCKAP5 RPS2 TMEM70 CLU PEA15 PPP2R4 S100B GPR37L1 ARHGDIG VSNL1 MYO1B PON2 TMSB10 CNP DUSP1 SOX2 DKK3 CD9 PRDX2 CADM3 RGCC CADM2 ISCU NPAS3 ATP6V1A SYT17 LDHB SHC4 MFSD6 GFRA1 NDUFA12 MT-CYB NACC2 FGF12 THOC7 THYN1 RPL13 CALCRL RPL32 KIF25 RHOJ NGFRAP1 MARCKSL1 KCNK1 ATP1A1 VPS35 FBXW11 ZCCHC24 CCK ZNF365 PPIH PRKAR1A CALM2 TCEAL3 KCNAB1 SPARCL1 KLC1 GPR158 ERBB3 PNMAL2 EPAS1 CHCHD2 SNCA SNAP25 COL9A2 RPL23A GLO1 FKBP8 TTYH2 EHD3 CLSTN1 BCAT1 TSPYL1 CA10 CDC42SE2 ATP5I MTRNR2L6 YJEFN3 MT1X UBE2M S100A6 IDI1 CRISPLD2 CHL1 C19ORF70 C14ORF2 NDFIP1 RAB1A RTKN PGRMC1 OPCML YWHAB OLFM2 MEGF11 PTGDS TMSB4X IFI16 COMMD6 MED10 ITM2B COX7C MBP NKAIN4 WIPF1 PMP2 ETV1 KIF19 PRDX1 PTN CAMK2G ZFHX4 COL9A1 SOX11 GAPDH RPS28 BRK1 ARPC4 NDRG2 PPP2R1A SARAF CALM1 ACTG1 PCDHB4 FAM3C GPCPD1 SUSD4 DEXI CISD1 MT-ND4L RNA5-8SP6 GSTP1 SLIT1 TRIB2 MAP1B SPOCK2 MT-ND5 COPS7A LMO4 CABP1 PDGFRA ASAP1 FXYD6 PEBP1 BAI2 WSCD1 THY1 RAB3IP ATP2A2 PPAP2B RGS12 COL11A1 TNS1 ATP5G3 C18ORF32 GNB1 TSKU MTUS1 FSCN1 NKX2-2 TMEM35 ALKBH7 RAB2A COX4I1 LRP1B QKI PCDH17 FGFR3 PSAP OLFM1 KIF1A GPR26 CFH RNASEK-C17ORF49 FTH1 MRPS28 B2M OPRM1 TUBB TBC1D15 SYTL2 PLEKHD1 ARFGAP2 ESCO2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "oligodendrocyte precursor cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RPL37A PTPRZ1 CST3 GPM6A RPL23A NKAIN4 ATP5E DNAJC6 NDFIP1 UQCRB GPNMB TMA7 PRNP PTGES3 MT-CO2 GPATCH4 RAB3IP RHEB RP11-111M22.2 VCAN CD63 TMSB10 C1D AZIN1 PGRMC1 LDHB C1QL2 NPTX1 MZT1 SCD5 RPL41 APP ERH PDGFRA CCND1 CRIP2 DNAJB6 TENM1 SEZ6L ATP1A2 NXPH1 PRKACB RPS27A AES TMEM132C RPS15 BASP1 CNTNAP5 CMAS RTN3 RFK GRIN1 APOD PMP2 UROS SEC61G DNAJC5 RPL31 FABP5 ACTB GPX4 ATP5I FAM69C ENO2 RAB7A B3GNT7 RPL38 SLC39A10 HOMER3 FXYD6 SLC40A1 ATP2B4 MT-ATP6 ASIC4 PIP5K1B RAB6A EXTL2 RGS4 CYFIP2 GRIK1 SNAP25 NARS NUP37 TRIM47 ACTG1 C7ORF50 PRDX2 VAMP5 FIS1 RPS26 FIBIN JUN MAPRE3 TUBB2A UQCRFS1 APLP1 MT2A SCN3B BCHE QDPR MTX3 TIMP1 SCN1A NPAS3 MT1M MAL2 PSMD8 MAPK1 RTN4 VEGFA FAM84A NUAK1 CHL1 RPL3 GNG3 PPAP2B PRKCE CALM2 TSC22D4 METTL7A SLC1A3 TPI1 MARCKS QKI ATP1A3 SYT1 GUK1 SLC25A4 VSTM2A DPYSL2 APLP2 EID1 BAALC MRAS GDA CTNNB1 SERPINI1 RRS1 SERP2 NRCAM CAMK2D GADD45B ASB13 GAPDH BEX1 NDUFB2 PTPRT NGFRAP1 VWA5A GPR56 FSCN1 RPS12 SIRPA SLC39A3 SLC1A2 TUBA1A YWHAB ATP2B2 RPS28 FTH1 ARFGAP2 ALDOA RPL12 MTFP1 RPL26 GTF2H2C_2 ESCO2 SYTL2 RAB3B ZNF385D HNRNPA1P40 PLEKHD1 PCDHGA10 PCDHGA5 PCDHGA6 PCDHA10 PCDHAC1 PCDHA9 PCDHA4\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "oligodendrocyte precursor cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: GPM6A ZBTB20 NFIA MBP DPF3 TOMM20 SPATA13 PRDX1 SLC24A2 NR1I3 HNRNPA1P40 SYTL2 RAB3B ZNF385D SNAP25 MEGF10 MT-ND4 SEPP1 ITM2C SCD MT3 RGCC ASCL1 CREB5 RASGEF1B RAB6A PPP2CA QKI FSCN1 TOMM7 TMEM144 GPR37 ARL8A FAM84A KIT SEMA3B MAP1B CNDP1 TXNIP ATP5C1 GNAQ NUTF2 CSPG4 MT-CO2 MT-ND5 COL4A5 PHYHIP CSRP1 TMSB10 NKX2-2 PPAP2B DNAJC6 DGKG SOX10 SPARC CADM2 FTL MT-CO3 FBLN2 DNER FTH1 SH2D6 OXR1 PPAPDC1A GADD45GIP1 CARNS1 NFE2L1 RPS15 RP11-111M22.2 ATP6AP2 BEX4 VCAN PLD5 STUB1 MT-ND2 MAPRE2 PRDX2 ZCCHC24 CYB5R3 TMOD2 EIF4A2 PVRL1 OLIG1 PDE1A NECAB1 RAN PRKAR1A MT-CO1 FGFR3 UBC RAD23B MAL PTPRZ1 BIRC5 DISC1 NIPA1 TBC1D15 AC244489.1 PCDHGA6 PCDHGA5 PCDHGA10 DNAJC21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "oligodendrocyte precursor cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SCD5 MTRNR2L12 MT-ND4 TBC1D15 MT-CO1 MT-CO3 MTRNR2L1 PSAP PTPRZ1 ZBTB20 APOD GPM6A MT-ATP6 MT-CYB NFIA PGD ZNF385D MT-ND2 CLSTN1 RPS28 PDGFRA PPAP2B STON2 COL9A1 MORF4L2 MT-CO2 TGOLN2 SPOCK1 TOMM70A GPNMB OLIG1 CCDC69 LMBR1 MEGF11 C3 ADCY10P1 HMGCR COL11A1 METTL7A COL20A1 TBCA OLIG2 POLR2I TLN2 ITPR2 IQCK CPE ADAM23 CACNA2D2 RAMP1 CORO2B SYT11 FXYD6 SLC1A2 OPA1 CKB MARCKS QKI PHYHIPL FSCN1 CAPZA2 CLIP3 NECAB1 CREB5 FTH1 PDE3A BAG4 RAB2A DGKG BST2 SLC19A1 PLEKHH2 CFH SLC2A1 GPR37L1 ATP6AP2 TIMP2 GAPDH EIF4G2 HTRA1 IQSEC1 CADM3 RPS2 DNM3 PCDH17 RAB3IP FGFR3 CDK5R1 MAPKAPK2 MTATP6P1 CTBP1 VDAC1 FCGR1B MASP1 PGK1 TSPAN7 CHN1 PPP2R4 SPARCL1 LUZP2 ALPL MTCH1 SERINC1 UBC KLC1 GORASP2 RAPGEF5 RP11-195F19.5 LYPD1 SLIT1 COTL1 SOD1 GPX1 SPP1 VEGFA PMP2 GDI1 PLCB1 TF HNRNPA1P40 MTRNR2L6 NR1I3 RPL21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "oligodendrocyte precursor cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-ND4 MTRNR2L1 GPRC5B ZBTB20 MT-CO2 PPAP2B CPE ACSS1 GAPDH SLC1A3 CLU AQP4 AGT TF BAG4 RPL3 SERPINE2 MT3 MT-ND1 RAMP1 PTPRZ1 MT-ATP6 RHOB MTRNR2L6 NAT8L SLC14A1 RPL15 PSAP PPDPF NKAIN4 PGK1 RNF11 PTN UQCRB SEMA3A SPON1 RAB3B RAB31 LYNX1 ACTB SERP2 MARCKS NDUFB11 GJA1 PGAM1 APOE SNCAIP ZFP36L1 RPL31 AHNAK CNTN1 GADD45B ATP6V1A MAGED1 PTPRM KIF21A TMEM150C SEPW1 SLC7A2 LMO3 CALM1 PEBP1 SLC39A10 SELT ITPR2 RAD23B TLN2 S100B HOMER1 NPTN C10ORF54 SSTR2 GPX4 S100A6 GMPR GPR56 NDUFA11 NRCAM MTRNR2L12 FGF2 MAF FGFR3 UQCR11 COL9A1 ATP1B2 ATP6V1C1 VDAC1 RP11-111M22.2 CSPG4 RPL12 PTMA MZT2B GPM6A RPL23A CKB CTSD MBP COX6B1 MT-ND2 CRKL ARHGAP35 RPL26 RPL35 TMEM123 MT-CYB MTUS1 MTATP6P1 TIMP3 SLC1A2 SOX6 RHBDD2 MT-ND3 ITM2C TMSB4X SLCO1C1 APP PPM1A COL6A4P2 HMGCS1 CYP27A1 SYTL2 RPL32 NID1 HIF3A MT-CO1 ZNF385D CD59 MT1E TSC22D1 YBX3 ALDOC HSPA2 PCSK1N ARL6IP5 HSP90AB1 PNMAL2 AC011043.1 GNAQ SCD5 NFIA NDFIP1 PDGFRB UQCRQ ITGB4 C10ORF10 IGFBP7 SNAP25 CFH RPS3A PCDHGA5 PCDHGA6 PCDHGA10 TBC1D15 DNAJC21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "oligodendrocyte precursor cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SCD5 TBC1D15 PTPRZ1 OLIG1 SYTL2 MTRNR2L1 MT-ND3 PTN MT-ND4 LINGO1 MT-ND2 ITFG1 ZBTB20 MT-CYB SLC6A1 BCAS1 ATP1B2 PLEKHH2 NDRG2 KIF19 VCAN FTH1 RPS15 PMP2 ACTB HMP19 RPL13 GAPDH NKX2-2 SNAP25 PTGDS MT-CO1 PDGFRA SLC22A17 MT-CO3 GPNMB RAMP1 RAB6A FSCN1 SYT11 MT-CO2 QKI MSMO1 KCNA1 SPATA13 NPTXR NDUFB8 CHL1 CST3 NDUFV1 NFIA GLUL CALM2 UBA1 NAP1L3 NTNG2 PCSK1N ATP5E IDI1 SOX21 TRIL TOMM20 WNT5A MARCKS THBS2 SCN1A SEMA5A TLE4 GRIK1 TAGLN3 PDLIM5 TMEM100 NGFRAP1 SMOC1 PPP3CB TMSB4X MBP APBB1 DNER CNTNAP5 PHKG1 GTF2H2C_2 RP11-139K1.2 FXYD6 KLHL12 ATP5H PCDH15 WASL PLOD2 SGK223 GNAQ TSPAN7 LRP4 HTRA1 ALCAM EDIL3 TXNIP PCBP1 CDKN2C SERPINE2 PGM2L1 GRINA CPE BANF1 HSP90AA1 SPCS2 MARCKSL1 PTMA ASIC4 ENO1 MT3 SHISA6 MT-ND4L ESYT1 SRM CAMK4 PTPRS ATP1B1 MT-ND1 PIK3R1 NAT8L RPL8 ETV1 DEXI PPDPF RPL38 THSD7A ENSA NRCAM HSPB1 ZNF365 TCEB2 DPF3 APLP2 NDFIP1 RPS28 UBE2L6 MFGE8 ZNF880 BCHE MRPL52 RHEB FAIM2 RPL32 VEGFA RPS10 TSC22D1 COPS8 PEG10 HIF3A ARHGAP42 PRNP APOL6 SYNGR1 ATP6V0E2 KIF1A MT1E CERS6 PHYHIPL MYOM1 CSPG4 ZFAND5 PET100 TOMM70A CYFIP2 GPM6A CHADL MDH2 FABP7 NDUFS5 PDE1A UQCRB OAZ1 HES4 MZT2B MRPS21 TALDO1 CLSTN2 MT-ATP6 ARF5 COX14 SHD ASAP1 CCDC121 SRP14 ATP5F1 ALDOC SLC25A4 SNAP91 THY1 ATP1A1 RP11-20I23.1 B2M MTRNR2L6 ATP6V0C HNRNPA1P40 PCDHGA6 PCDHGA10 PCDHGA5 RAB3B CFH TF\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "oligodendrocyte precursor cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO2 RAB3B PTPRZ1 MARCKSL1 MT-CO3 NFIA HIF3A MT-ND2 RAB3IP TUBA1A VCAN MT-ATP6 JUN CMTM5 EIF4A2 MT-CYB PDGFRA MT-ND3 PSAP CLIP3 SUB1 HTRA1 ATP2B4 SPARCL1 MT-ND1 ANAPC11 COL9A1 MT-CO1 SCN1A ATP6V0E2 ATP1B2 QKI TF IDS SERF2 VPS35 WBP2 PRDX2 LYPD1 CAMK2D OLFM2 APOD ATP5A1 ZCCHC24 DOCK10 SERINC3 ERBB3 ELMO1 SOX4 B3GNT7 MEGF10 PTGDS UBA1 ACTG1 TXNIP ASIC4 ERBB4 ENO1 RPL32 SOCS3 SNX22 GPR17 PSMD2 TPT1 RAD23B FKBP1A RPL13 PPA1 MT-ND4 ACTB SLC1A2 SRM FOS ZBTB20 FAM131B METTL7A PEA15 WBP11 RPS28 TMEM147 CTNNA2 CALM2 ATP1A2 PRELID1 GFRA1 OLFM1 FAM84A RPS4X MTX3 RIN3 PTPRN2 ATP5F1 EIF1 GPR56 TMEM200C DYNLL1 MFSD6 CHCHD2 MAP7D1 CD63 ATP5I MARCKS EIF5A2 CD59 SRP14 RTN4 GYG1 ZFP36L1 COL11A1 SMAP2 MAP4 SSPN NOP10 LUZP2 ATP5G1 SYT11 MYEOV2 CLSTN1 OLIG1 ITFG1 TSC22D4 TMEM179B PCDHAC1 PRRX1 ATP2A2 BCL6 SLC6A1 MT-ND4L OLA1 DNER PLIN3 ITPR2 POLR2J S100B SCD5 RP11-111M22.2 ALDOC ITM2B GPM6A SKP1 KCNF1 MRPL51 IDH3A ATXN10 PVRL1 UQCR10 CRISPLD2 ATP1B1 IQSEC1 CKB GAPDH PIK3R1 CDH8 LRP1B PET100 C1QL1 BSCL2 DISC1 NUDT4 B2M PTCHD4 RP11-219A15.1 AC244489.1 NR1I3 LINC01296 PCDHGA6 PCDHGA10 PCDHGA5 TBC1D15 DNAJC21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "oligodendrocyte precursor cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PTPRZ1 SLC1A2 GPNMB RAB3B SYTL2 VCAN SQLE ZBTB20 CLU RTKN OLIG1 RABAC1 C18ORF32 BCL6 MDH1 NRCAM MEGF11 ASIC4 CALM1 SNAP25 RAB3IP PCDHGA5 SCN1A PIEZO1 SCD5 CD99L2 RPL39 CSDE1 DLC1 ARHGAP29 ZCCHC24 MT-ATP6 CSPG4 TUSC2 HMGB1P35 METTL7A CTC-575D19.1 ZFP36L1 LUZP2 SPOCK1 PCDH15 CTBP1 THOC7 GPM6A TENM1 PRKACB MTUS1 KCNA2 BIRC5 SOX6 PDE9A TOMM20 COX7C FTH1 PPAP2B HS6ST3 RHBDD2 LRP4 SYT17 NDRG2 DNAJC6 ARL6IP5 SOX2 DOCK10 COTL1 CPE CTDSP1 TGOLN2 MRPS21 PID1 PDGFRB RPL11 PDLIM5 NDUFAF2 NKAIN4 NFIA APOD EDIL3 PTN DNER KCNJ10 GNG12 RP11-111M22.2 HRK CHST11 BAALC COL5A3 PPAPDC1A RPL13 TMSB4X EIF1 VDAC3 HNRNPH2 REEP2 PHYHIPL TERF2IP ZNF536 OLIG2 NDFIP1 ANGPTL2 CCDC152 UQCRFS1 IPCEF1 PGK1 DGKG ATP1A2 OAZ1 EHD3 DPYSL2 SLC1A3 UQCRC2 MARCKSL1 SOX4 FABP7 FAM84A PPP2R4 MAGED1 ETV1 NACC2 NDUFA2 SMOC1 COL9A1 MTRNR2L1 ACTG1 MTCH1 PPIA LMBR1 TF SYT11 MT2A NPAS3 GRAMD3 PDE3A ETV5 MARCKS PARP4 ATP5A1 RP11-20I23.1 RPS15 LINC01296 MIR6723 MT-CO1 ATP6V0C RP11-219A15.1 GTF2H2C_2 DNAJC21 TBC1D15 ZNF385D\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "oligodendrocyte precursor cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: HTRA1 QKI ZBTB20 MT-CO2 KIF5A MT-ND4 VCAN NFIA GPM6A MT-CO3 RP11-111M22.2 COX7C BCL6 PLEKHH2 GAPDH MT-CO1 MT-ND3 SCN1A PLP1 CADM2 MT-CYB COQ10B SERPINE2 ELMO1 PTPRZ1 SMOC1 ZNF385D RAB3B SYTL2 ARFGAP2 WNT5A ARPC4 MAP1B SLITRK1 PAQR8 MTRNR2L12 FERMT1 MTRNR2L1 SNRPE TMEM123 SOX6 CMTM5 GUK1 LPPR4 VEGFA ATP6V1E1 CKB ALDOC ITM2B EGFR ATP5B SLC38A1 MT-ND1 PPP3R1 GPR37L1 BCAS2 CLU RPL13A RPS28 NAT8L MMP24-AS1 COL11A1 SEMA5A GPR56 GRIK1 PPP3CB UHMK1 SCG2 PCSK5 ATP6V0E2 MAPK1 TSPYL1 TMEM132C DUSP1 ITPR2 WIPF1 TENM1 PARP14 BEX1 FTH1 DPP6 PSAP PCBP1 VPS35 KCNAB1 YWHAZ CSPG4 MAPK8IP2 ACTG1 VAPB PLD3 ASIC4 TCEB2 SELT INPP5F PNMA1 CTNNB1 DNAJC6 EIF1AX RAB2A UROS FTL RELN OLIG1 CALM1 USP5 MBP RANBP1 HIF3A NRCAM TMEM59L RAB31 RAB3IP LMO4 PRUNE2 FAIM2 PRKAR1B MRPS28 ONECUT1 RPL21 RHBDF1 ATP1A1 ATP6V0C BSCL2 RP11-20I23.1 PCDHAC1 PCDHA9 PCDHA10 PCDHA4\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "oligodendrocyte precursor cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PTPRZ1 RAB3IP SLC1A2 CKB RAB3B ZNF385D FGFR3 CALN1 PON2 RPL13A ZBTB20 NFIA CLSTN1 RPL41 NACC2 GAPDH OR6D1P VEGFA FAM89A MARCKS TRIM47 TF ADAD2 IMMP1L TSHZ2 FGF2 PGRMC1 GNG12 B3GNT1 PMP2 PPAP2B SLC22A17 MEGF11 HSP90AA1 ZFP36L1 ARX PPP2CB ITPR2 CDH19 SGCD SULF2 RPL10A PIEZO1 WIPF1 MT3 CTC-575D19.1 GPR56 IFI16 SLC2A1 PODXL RPL23A EIF4G2 RCAN2 RGS12 DOCK10 PLP1 ACTB RPS10 HEY1 YWHAG NCKAP5 SLC6A1 CDK17 EDIL3 ASCL1 CHL1 RHOJ MAF BSG COL9A1 DUSP1 SCOC SERPINE2 SLC7A2 KAL1 PSAP VCAN GRINA SOX21 SCN1A CAMK2D ALCAM MDH1 KCNJ10 PCDHB4 DIO2 CD24 EGFR PTGES3 DISC1 CFH GTF2H2C_2 TBC1D15 DNAJC21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "oligodendrocyte precursor cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RAB3B SCD5 PTPRZ1 NFIA CLU ARL6IP5 RPL13 SLC1A2 NXPH1 RAB3IP PMP2 CREB5 CHL1 ITM2B PLP1 MT-ATP6 ZBTB20 GRAMD3 RPL41 SNX22 GNB1 MT-ND4 CLSTN1 ACTB CFH NDUFS5 METTL7A SGCD ATP1A1 SNAP25 LMO2 EIF1AX ATP13A4 MT3 GSG1L MT-CO2 C1QL2 SULF2 PPP2R1A PHYHIPL PBX3 OLIG2 VWA1 PPAP2B TRIB2 PPFIBP2 RPS12 PTMA WFS1 ELMO1 THYN1 ERBB3 CLDN10 CTNND2 CPE CALCRL COX6C ARHGAP6 HEPACAM OR6D1P GPNMB UROS TDRD7 CDK5R1 NOTCH1 PREX2 SEPW1 NPTN ATP6AP2 UQCRC2 HEY1 TPT1 GPM6A MYO16 PNKP NAPA VDAC1 IGFBP5 PTPRN2 ARL6IP1 HS6ST2 SMAP2 THBS2 MTRNR2L1 PTPRS PTPRM COL6A1 SPARCL1 RP11-219A15.1 COX5B TMEM59L ATP1B2 TBCA MT-CO3 SPOCK2 ISCU DNER UQCR10 RP11-111M22.2 CST3 POMP OLIG1 HSPA2 MEGF11 DOCK10 HSP90AB1 EHD3 SRP9 LPPR4 FXYD6 HOMER1 LRP1B SKP1 SLC6A1 COX7A2 MAPK1 HMGCS1 PCSK1N MORF4L1 ANKRD18A FAM127A RPS28 LUZP2 RAB6B KIT UQCRB GPR37L1 COL4A3 SHISA6 SLC19A3 NACC2 GAD1 SUMO1 CA10 SHD QKI COL5A3 ELAVL4 PSAP TM2D3 MT2A HNRNPA1P40 TUBB ALDOA MTRNR2L6 THY1 GTF2H2C_2 RPS26 SYTL2 TF TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "oligodendrocyte precursor cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT2A CALM2 BSG GADD45B UBC PTPRZ1 B2M UQCR10 APOD HSP90AA1 HNRNPA1P40 RPL7 TMSB10 RPL12 TPT1 RPL35 RPS6 FBXO8 HMGCR GPNMB CSPG4 ISG15 COL20A1 INPP5F RPL6 OAZ1 TM4SF1 MIF ARFGAP2 IFITM3 MAP7D1 SNCB NFIA NEFL ALDOC ARHGAP29 PLIN3 KIF5A COX5B MT-ND2 FOS CFL1 ITPR2 ATP6V1C1 CYCS PID1 BRK1 CDH6 REEP5 RPL11 CST3 TUBB4A TESPA1 PMP2 ACTB FLT1 RPL13 C1ORF52 TIMP3 PRDX3 RPL37A RPL23A COL11A1 NRCAM TMSB4X TSC22D4 PEBP1 EDNRB NRIP3 FAM127A RPS10 RAB11A RPL41 RGCC SLC2A1 LYPD1 GADD45GIP1 ATP6V0D1 CALM1 TUBA1A YBX3 ENO2 MAGEH1 DYNLL1 WLS STUB1 TOMM70A MAP1B ITM2A TUBB RANBP1 SPOCK2 SYT3 SYT11 CDH8 MT1X RAB3C ELTD1 RSL24D1 OR6D1P OLFM1 HDDC2 CSDE1 ENG CCT5 OST4 RARRES3 ZFAND5 RAPGEF5 NHP2L1 GHITM GNAQ PLD3 RTN4 CAMK4 ACTG1 FTL CLDN5 MDH2 C19ORF43 SLC7A5 BIRC5 BAALC PTMA CHN1 SERINC1 EIF1 GPX4 NKAIN4 CYC1 GABARAPL1 FABP5 ADAMTS17 EDN1 ATP6V1E1 RAB6B MT3 ZBTB20 TXNIP PIEZO1 TBC1D15 RAB3B ZNF385D SYTL2 CD59 IFI27 GABARAP RPL21 RPL17-C18ORF32 RPL17 RPL13A\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "oligodendrocyte precursor cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RPL37A TMSB4X FTL RPS10 RPL41 RPL35 RPS27A RPL13A RPS12 RPL31 RPL36A RPL18A RPS28 HSP90AA1 APOC1 RPL23A RPL26 ZFP36L1 RPS3A RPS15 RPL13 RPS2 RPL38 A2M PLP1 CLDND1 PIP4K2A DYNLL1 RTN3 ANLN CCR1 TLR5 RPS6 MT-CO1 CTC-575D19.1 SPP1 RPL8 COX7C MOBP MT-CO2 DOCK10 SLC1A3 LILRB1 TMSB10 C1QA HAMP NDUFA12 RPL3 TXNIP MTRNR2L1 RPL32 PTMA MT-CO3 ACTB MT2A RPL17-C18ORF32 ANKRD18A RPL17 TF CBX6 EID1 RPL15 OPN3 HSPA2 CALM3 ANAPC11 GPIHBP1 SLC24A2 DRAP1 HSPB1 ACTG1 ATP2B4 UBA52 MBP ITGA6 GAPDH RPL11 SKP1 FBXO2 C1QC ABCA8 ATP6AP2 COX7B REEP5 WASL SYT17 CRHBP DNAJA1 GPX4 KCTD12 IL4R THEMIS2 SERF2 MS4A4A FGF2 SLC31A2 MT-ND5 LATS2 JUND RNA5-8SP6 PCBP1 RPL39 KLC1 CADM2 PEBP1 SCD HIST1H2AC HN1 TTYH2 ITFG1 IFITM3 GSTP1 RPS5 CDH8 RPL6 WNT5A NDUFS6 GPR56 MS4A7 INSIG1 GRPEL1 DYNLRB1 CALM2 FAM174A YWHAQ UQCRQ APLP1 CD63 TUBD1 TMA7 NDUFB1 PSMA7 QKI APOE ATP5E PRELID1 RPS4X SYTL2 EIF4A2 CD99 ID2 BST2 SEPP1 KIF21A MYL6 CLU TOMM22 RP11-51O6.1 RPS26 CRYAB NDUFA1 SERINC3 MAF HTRA1 ENPP2 MTCH1 BRK1 CLMN RPL10A NDUFB4 PRUNE2 TOMM7 SEPW1 METTL7A SCN1B RAB3B NUDT21 ATP5O ETS2 RNASEK-C17ORF49 FTH1 OR6D1P RPL21 PLEKHD1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "phagocyte",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SPP1 PSAP MT-CO1 MT-CO3 TMSB4X ZFP36L1 SYTL2 MT-ND4 MTRNR2L8 EIF4A2 PLP1 RAPGEF5 MBP MT-CO2 ZFP36L2 PTMA MTRNR2L12 RTN4 ADAM28 ESCO2 ATP6V0E2 SIRPA LYN GADD45GIP1 FAIM2 CST3 PCBP1 VAV1 ATP5E VIM COL4A5 GPRC5B ZNF536 RPL3 C1QC CLTA MT2A METTL7A LMO4 C10ORF54 CDK17 UQCRB RPL7 ELMO1 NFATC2 ETV5 MTRNR2L1 HSP90AA1 C16ORF13 ITGB2 ACSS1 PPP3CA SLC7A8 RPS6 RPL36A APLP2 BASP1 MTUS1 LANCL1 HTRA1 TBC1D15 TRMT112 FSCN1 VWA1 ASAP1 RNA5-8SP6 FTL TMEM123 RP11-111M22.2 FLOT2 SPATA13 EIF1B MT-CYB CREB5 RPS28 RGCC CDC14A AIF1L APOE PADI2 CFL1 LAMTOR1 KLC1 GBE1 LMO2 PRKAR1A IL4R RTN3 ATP1A3 EPS15 ATP6V1G1 RPS2 IPCEF1 MT-ND2 CHADL CASP4 MTG1 CD9 RPL38 MT-ND5 SH3BGRL3 KRAS SLC7A5 OR6D1P CHN1 TLE4 IL10RA ARL2BP GPR37 MT-ND3 QDPR CYFIP2 SNAP25 PRNP CSF1R NDRG2 TPI1 ATP5F1 ANLN MRPS36P4 QKI CSRP1 PAQR8 CTSD RAB3B TRIM59 DISC1 CDC42SE2 RPL17-C18ORF32 RPL17 HNRNPA1P40 TF\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "phagocyte",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 FTL MBP TF TMSB4X SPP1 PPP1CB QKI RPL23A YAE1D1 RPS6 EIF1AX SEPW1 DPYSL2 ZFP36L1 PDE1C RPL13 IFI16 SPCS2 HAMP PTGDS MTCH1 CNP PIP4K2A ACTB SERINC1 TTYH2 ARFGAP2 NDFIP2 HEPN1 NUAK1 GTF3A ENPP2 TPT1 TBCA ZFP36L2 MAPK1 SERF2 RPL35 LCP2 THEMIS2 MYEOV2 PPM1A SH2D6 COX6C HSPA2 RPS4X LDHB SLC1A3 NFIA PRNP ATP5G2 ITFG1 VAMP2 RTN4 KIF19 SUMO1 ZBTB20 EVI2A ADORA1 DNM3 SLC25A6 APP IPCEF1 CSF3R C4ORF3 TUBB2B GNB1 ATHL1 PLEKHG1 SOX2 TMOD2 C14ORF132 PAFAH1B2 MAL TXNIP MT-ND1 RPL18A TMSB10 MT-ATP6 KIF1A PTPRS ZCCHC24 INSIG1 DKK3 PLEKHG3 MORF4L1 COTL1 CLDND1 H2AFZ STAB1 FTH1 GUK1 UBC FOXP2 TSC22D1 VAV1 SNCA CD63 IDI1 SEPP1 CA11 SMAP2 CADM2 TIMP2 BCAS1 JOSD2 MAPKAPK2 HHATL CSRP1 CLDN11 MYL6B AURKAIP1 MT2A PIEZO2 FKBP8 PRIM1 SQLE PSAP MRPS21 TGOLN2 SPOCK1 RP11-111M22.2 GDI1 RPS27A SRGN MT1X RPL38 DNAJC6 GMFG GDE1 MT-ND2 CCND1 PDK4 MT-CO1 PHYHIPL RPL6 RPL17-C18ORF32 RPS15 RPL36A MT-CO3 RPL41 RPL17 RPS3A GTF2H2C_2 HNRNPA1P40 AC244489.1 HLA-B TBC1D15 ZNF385D SYTL2 RAB3B\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "phagocyte",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SNAP25 SYT1 CALM2 RTN1 ATP1B1 STMN1 COX7C TUBA1B PNMA2 DPYSL2 THY1 RTN3 TMSB10 TMSB4X COX6C TSPAN7 UQCR10 HSP90AA1 MT-ND4 RTN4 CALM3 PGRMC1 CKB MT-CO2 PEBP1 SNCA CSDE1 PPP3CA STXBP1 RPS27A GAPDH PLD3 UBE2V2 CADM2 NEGR1 OXR1 ACOT7 TUBB4A VPS35 MAPK1 CHL1 PREPL ATP1A3 POLR2I SERINC1 AES CHCHD2 CLSTN1 SPARCL1 VSNL1 MAP1B FTL PSAP SCD5 APP NRGN TAGLN3 ENO1 SV2B ATP2A2 REEP2 RANBP1 EIF1 SLC39A10 FKBP8 PRKAR1B ATP6V1B2 SLC9A6 POLR2K MTRNR2L1 PRKCB SLC25A5 FAM198B PFKP NRCAM TRIM37 ENC1 ATP9A SCN1A MT-ND3 NSF LGALS1 MAP1LC3A HSP90AB1 TMEM130 KCNK1 ALDOC TUBB4B FSTL5 SYT11 ARPP19 CEND1 CLU YWHAG NCAM2 PCSK1 BASP1 ANXA6 VDAC1 STX1A NPTXR PPIA SLC17A7 UCHL1 PRKACB DCLK1 NPTX1 SYT4 PRNP CALM1 GPM6A GAP43 ARF3 NUAK1 RPL39 SLC22A17 SKP1 STMN2 ARF1 NGFRAP1 MT-ND1 MAP4 MT-CO3 MT-CO1 ACTR10 USMG5 TSPYL4 BEX1 GADD45GIP1 OLFM1 MYL12B SCN3B TMEM59L IDS PDE1A ATP5J C14ORF2 TOLLIP RRAGA RAB3C ETFB NUDT21 SLC7A5 CCK VSTM2L PPP2R1A SUCLA2 TOMM20 CTSD PRUNE2 AP2B1 TRIB2 ZFAND5 RXFP1 ADAM23 EPHB6 INPP5F AP3S1 COX6A1 CNR1 PNMAL1 EFHD2 CFL1 SUSD4 COPS8 TPI1 TUBB3 LYNX1 REEP5 PEA15 PSMA7 TMA7 C12ORF49 DKK3 LIN7B SLC25A6 HPCA TMEM14A ARPC5L GPX4 ATP6V0E2 WSB2 HINT1 ACTG1 PGK1 VDAC3 MT-CYB SLC25A22 NEUROD2 SNCG NEFL MAGEH1 CLSTN2 YWHAZ VIP OXCT1 CAMK2D HMGCR SNAP91 OLA1 COX6B1 ATP6V1A ATP5C1 FSCN1 DPY19L1 RABAC1 MTPN SERINC3 NDFIP2 SNX3 ARL6IP1 STK39 SERPINI1 NDUFS5 HRK NDUFC1 MAPRE3 TUBA1A MT-ND2 ACTB SLC38A1 PFN2 HPRT1 NDUFAB1 CHN1 NGEF OPN3 CLIP3 NDUFA13 MAST3 DNM3 SYN1 UBC NDUFB4 CRYAB EIF4G2 PPP2R2C SPOCK2 SYT17 LMBRD2 UBL5 PEX5L SEPW1 SERF2 ATP6V1F SEC61G AP2S1 SPRN ITM2B PPP1CB RPL17 MYEOV2 MTX3 NDRG3 ATP2B4 ACTR1A YWHAH SYN2 RPL38 PHYHIPL NWD2 CPE LANCL1 NAP1L2 MAP2K1 JUND GLRA2 MANBAL GRINA MT3 PGM2L1 UQCRFS1 GABARAPL2 MTRNR2L6 UQCRH VAMP2 PRDX3 B3GALT2 PPM1A MIF STMN3 KLC2 MMD SST SUMO3 ETS2 SELT SARAF GNB1 NDUFA4 APLP2 SSBP3 CDH7 COX7A1 SLC12A5 CTNND2 PKM SNX10 HTR2A NAPA CMAS PNMAL2 MRPL51 ATP5E NPTN MORF4L2 BHLHE40 NDRG4 NDUFA11 ENO2 EHD3 RPL3 CYC1 RAB3A MLLT11 TUBB2A SNN UBB NUTF2 AP2M1 POMP TMOD2 EPDR1 CREG2 RPL41 SCAMP5 NEFM MRPS28 VDAC2 C16ORF13 SCG2 CAB39 ANXA7 SSTR2 BEX4 CFL2 TM2D3 NMNAT2 C2ORF47 QDPR ATP5G1 DNAJC5 PCSK1N ATP1A1 BCAT1 RAB6B FXYD6 CDK14 APLP1 LRP1B COX4I1 CNTN1 SIRPA PRKCG RPS15 RPS2 GUCY1B3 GRIN1 NDUFAF3 FABP5 RHEB TUBA4A RAB40B TCEB2 UHMK1 C9ORF16 MLF2 SPRYD3 CNRIP1 ATP6V0B NEFH SH3GL2 CAMK4 CHGB RPS26 PPP3R1 NARS RPS10 GDI1 NDUFV1 CRTAC1 SULT4A1 PPDPF RHBDD2 RCAN2 CMPK1 PNKD BNIP3 COX5B FTH1 KIF21A SLIT3 SAP18 NPTX2 SDCBP MTRNR2L12 BSN PAK1 MTCH1 SLIT1 SLC7A8 NGRN RP11-20I23.1 ATP6V0C BSCL2 HNRNPA1P40\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "pyramidal neuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO2 MT-CO1 MT-ND4 MT-CO3 MAP1B CHN1 CALM1 SYT1 SNAP25 MT-ND2 RTN4 RTN1 ENC1 GAPDH PRDX5 SLC17A7 YWHAH PRNP MT-CYB ARPP19 CADM2 NRCAM TUBA1A GPM6A CLU NEFL PJA2 IDS MT-ATP6 OXR1 SCN3B FTH1 CCK TMSB10 MT-ND1 MTATP6P1 SV2B CYCS UQCRH MT-ND3 IPCEF1 APLP2 YWHAZ FAIM2 RPL13 SLC22A17 PNMA2 BRK1 MYL12B TSC22D1 MTCH1 STMN3 PCMT1 OXCT1 RASGRF1 MAPK1 HMP19 OAZ1 ZFAND5 ITM2C SCOC ATP6V1A SERINC1 RPL37A CDK5R1 PSD3 LANCL1 EIF5A2 RHEB CNR1 CDC37 CDK17 NGFRAP1 ATP5A1 VSNL1 KIAA1045 PRKCB CALM2 DGUOK EIF4G2 CSDE1 ARHGDIG KLC1 NSF ABHD8 TOLLIP HOMER1 CLSTN1 DNAJC5 MAP1A CLIP3 BSN ATP5J2 PAQR9 RAB6B ATP2B2 RPS3A ATP1A3 ARL8B TSPAN7 NEGR1 PID1 CALM3 HMGCS1 ACTG1 TUBA1B TLN2 CAB39 NDUFA13 ATP6V1B2 SPARC SNCA NARS RPL41 UBL5 YWHAG ACOT7 HPCA HIGD1A BEX5 MED10 DSTN KCNAB2 OLA1 ATP5B GADD45GIP1 ATP1B1 EFR3A REPS2 ATP2A2 PPP2CB KCNC2 MKX TMEM130 NGEF RAB7A DPYSL2 KCNK1 CTXN1 KIF21A VDAC1 DYNLRB1 GABARAPL1 AP2M1 RPL26 GABRA1 EIF1AX MTPN NHP2L1 PIK3R1 MDH1 PPIA RAB27B GPCPD1 PPP3CB GNB1 TMX4 PIN1 NDUFA11 THSD7A APBB1 MFSD6 DNM3 PGAM1 AURKAIP1 BEX2 PPP3CA BAI2 NDRG4 NCALD CYC1 PELI3 RAD23B CKB RNF11 C1ORF115 CALN1 RAB6A HMGCR NECAB1 ASAP1 VSTM2A REEP5 BASP1 NEFM MTRNR2L1 MET MYEOV2 PKM ERH PFN2 SLC9A1 NDUFC1 PRKAR1B APLP1 ARL6IP5 TUBB2A PPP2R2B CMAS ANO3 SYN1 SLC12A5 PAM TPRG1L CAP2 MRFAP1 STOX1 FGF12 TMSB4X CPE KIF1A ITFG1 ARL1 MAP1LC3A RPL39 PEBP1 TPI1 GDI1 C19ORF43 PSAP ATP5H TSPYL1 PEX5L CD59 NDFIP2 ENPP2 TCEB2 SUB1 STXBP1 CREG2 EIF4A2 DNAJC6 SCD5 DCTN1 KIF3C SNX10 NDRG3 NAP1L3 PHYHIP GPX1 HNRNPH2 NDUFA5 SARAF ALDOA LGI3 SGK223 PNMAL1 CLTC RPL13A CEND1 SDCBP NBL1 TMEM35 TUBB4A RFC3 SEPW1 ZBTB18 RAPGEF5 TOMM34 PRDX1 NCDN PLCB1 NDUFB10 TPT1 MAP7D2 PGM2L1 FBXL16 FAT3 NELL2 NDUFS5 FKBP1A PSMA7 PVRL1 NAPB TLE4 ATP6V1G1 ATOX1 SNX17 FAM174A PACSIN1 SPRYD3 GRIN2A WASF1 CTNND2 ACTB CAMK2D LMO3 NDUFA8 FXYD6 VAMP2 EHD3 MAP2K4 NAP1L2 SUMO2 FIGF ATP5O NRGN SPTBN1 TMOD2 CNGB1 CABP1 GNAQ DKK3 MSMO1 CCDC85B PI4KA DCTN3 RGS4 FTL OPA1 TEX2 UBE2M TIMP2 PGRMC1 BTBD1 ZNF365 KLHDC3 NIPA1 EGFL7 MRPL55 SNX3 SLC25A22 CNTN1 RAP1GAP2 ATP1A1 OCIAD1 PTPRN KIF5A RHBDD2 TUBB4B JUND PPP1CB TMA7 OLFM1 RAB11A RAB3A TMEM59L FKBP8 WDR47 ATP6V1G2 NGRN RP11-20I23.1 GABARAP RNASEK-C17ORF49 RPL18A TUBB3 ATP6V0C MTRNR2L6 MBOAT7 RPL21 PCDHA9 PCDHAC1 PCDHA4 PCDHA10\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "pyramidal neuron",
"role": "assistant"
}
] |
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