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[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 OLFM1 MT-CO2 SNAP25 SYT1 VAMP2 TUBA1B NRGN GPM6A GAPDH RPS4X TSPAN7 MT-ND2 TSC22D1 TMSB10 CHN1 UBE2E3 MT-CO3 DCLK1 NDFIP1 TMSB4X PITHD1 CADM2 LAMTOR5 MT-ATP6 IQCK MT-CYB ATP5I APLP1 CCK MLLT11 MT-ND1 TSPYL1 YWHAB OPN3 ENO2 STMN1 MT-ND4 ENO1 MTRNR2L8 SYT13 PLD3 GDI1 SERINC1 SARAF PCDHGA6 CLTC CALM2 STXBP1 S100A13 PSAP CREG2 GDA PSD3 LDB2 ACTB NEFL SKP1 ACTG1 CKB MAP1A CALM1 MTRNR2L12 GSKIP RTN1 NOV CALM3 HNRNPH2 RAB6B TERF2IP AP2M1 BRK1 OLA1 PPP2R2B STMN2 SERPINE2 ALKBH1 C6ORF1 COPG1 UQCRQ TBR1 ZBTB18 MT-ND3 DGUOK ATP2B2 SEPW1 SPTBN1 BSN SPOCK2 EPB41L3 YWHAG ATP1A3 RP11-632C17__A.1 ESYT1 SCN1B SLC39A10 PPP2R4 ATP2A2 PRNP TXNDC17 NAT8L ZFAND5 PREPL GUK1 SH3GL2 MBOAT7 DIRAS2 DNM3 MT-ND5 PHYHIP YWHAZ ALCAM OAZ1 ARPP19 SMS USMG5 SPOCK1 LDOC1 RPL23A GABRG1 UCHL1 CDC42SE2 HSP90AA1 CLU PARM1 STX1A TPI1 FKBP8 MTATP6P1 COBLL1 HCN1 BTBD10 EIF5A2 FAM84A IPCEF1 PPP3CB HS6ST3 DMTN PPP2CA TKT SYT5 DYNLRB1 SLC38A11 CNRIP1 SOD1 CTBP1 ARL6IP1 GRIN1 ELMO1 GNG3 MAP1LC3A PPP3CA DMKN SNCA NDUFA5 SAP18 ATP5B SYT11 CAPZA2 UBE2V2 ATP6AP2 GSK3A KLC1 FAM131B RPS28 PPP2R1A MTX3 NDUFB3 PCDH19 NDUFS5 RPS15 RPL41 PNMA1 RORB PJA2 BSG TNNT2 PTPRN PFDN4 GCHFR BASP1 RPL39 TOLLIP RPL13A LMO4 CHMP4B RPS2 COX7A2L NAPB ACLY FAM19A2 OPCML NUAK1 SLIT1 ARL6IP5 RPL31 GRIN2A RPL15 SLC30A3 EDNRB KIFAP3 ATP6V1C1 HCN2 ARF1 DYNLL2 TCEB2 ACTR1A EPS15 PTMA UBA52 FXYD6 CLSTN1 ATP1B1 UBL5 MAGEH1 ITM2B RTN4R SMAP2 GRM3 DPY19L1 CALN1 DHCR24 TOMM70A NDUFC1 COX7C DPYSL2 FTH1 TAGLN3 KIAA1045 RAB6A UBC ATP6V1G1 OCIAD1 SLC12A5 CMPK1 MRPL20 SCN1A SLC9A6 VDAC3 NDUFA2 B3GNT1 ANXA7 RPS26 STMN3 CYP26B1 CSDE1 ANO3 LRRIQ1 SYN1 NEGR1 OXCT1 FAIM2 SULT4A1 CAMK2G RAB3A TUBA1A SERPINI1 PPDPF RTN3 PSMD12 DLL3 GHITM DNAJC21 TBC1D15 RPL36A RPL18A UQCRB\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "mixed excitatory neuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO2 MT-CO3 MT-ND2 MT-ATP6 MT-CYB CALM1 MT-ND4 SYT1 TUBA1B ATP1B1 MT-ND1 MT-ND3 CCK SPARCL1 HSP90AA1 RTN3 HSP90AB1 CHN1 MAP1B GAPDH SEZ6L2 FTL CLU PFN2 TIMP2 IPCEF1 CALM2 CDK5R1 SEPW1 RAP1GDS1 ELAVL4 RTN1 EFR3A SYN2 ATP6V1B2 ACTG1 MYL6 PGM2L1 SERPINE2 UBE2E3 PPP1CB UBB PRNP DCLK1 UCHL1 PEBP1 COX5B COX7A2 CALM3 ATP2B2 GAP43 STMN2 MT-CO1 COX4I1 SYT11 RPL18A MORF4L1 PODXL COX7B WDR47 SIRPA GUK1 NCALD SKP1 POLR2I PNKD TMSB10 CPLX2 TSC22D1 WBSCR17 SELM TSPYL1 GUCY1B3 NGFRAP1 PI4KA TMEM11 GHITM ID2 DPP6 YWHAH NELL2 NDFIP1 UQCR10 HINT1 CLTC RAPGEF5 C9ORF16 ETFB LMO3 KCNK1 CDC37 MRPL55 C2ORF80 OPA1 INPP5F LGALS1 ATP5G3 CTSD RHEB STXBP1 COX6A1 RPL10A PFKP GABRA1 FBXL16 CISD1 ATP1A3 FAM219A DKK3 AES LIMK1 NDUFA1 HSPA8 NGEF CABP1 C19ORF70 MAP4 RPL15 POMP ATP6V1C1 UQCRH CEND1 PTGES3 PPP3CB NAP1L3 CYFIP2 ITM2C UBC APP CD63 C14ORF2 LMO4 NDUFA12 MDH1 EIF4A2 C19ORF53 CAMKK2 RPS15 RPL13 COL6A1 CLDN11 NDRG4 RTN4R PPP3CA TM2D3 TUBB4B STRAP DYNLRB1 ENO1 GLRA3 SLC6A1 H2AFZ SNRNP25 DLD RAN NDUFA5 CBLN4 ATP6V0E2 AP2M1 MCHR2 RAB1A TOLLIP ATP5J2 HK1 STMN1 PTPRT PIN1 PLCB1 CKB FAIM2 SERF2 PPIA NCAM2 DBNDD1 FXYD6 PGAM1 NPTN SH3GL2 YWHAB SNCG RTN4 ENC1 RPL32 MSMO1 COX6B1 CHL1 BEX4 ARF1 PPA1 SLC35B1 ELMO1 MET RAB4A DDAH1 YWHAG SOD1 KCNF1 CADPS2 DIRAS1 TXN MAP2K1 DYNLT3 NRGN KIF21A BCAP31 MORF4L2 SRP14 UHMK1 TMA7 CRKL GNG3 DYNLL2 CHMP4B DPYSL2 GABARAP RPS27A ATP6V0C NDUFA11 RPL41 RP11-20I23.1 RPS28 CFH RAB5C RPL17-C18ORF32 RPL17 TUBB RAB3B DNAJC21 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "mixed excitatory neuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: CHN1 ENC1 C1QL2 TSPAN7 MT-CO1 RTN4 CADM2 CDK5R1 CNR1 FAM3C NRGN BTBD1 ATP1B1 RPL21 DPP6 SUMO2 RTN1 CKB ATP1A1 AP1S1 EFR3A SH3GL2 TESPA1 TMEM59L APP KCNV1 YWHAH GRAMD3 PREPL BASP1 ATP5A1 RTN3 NECAB1 TOLLIP SLC17A7 ATP6AP2 HMGCR CLTC NDUFA13 NCEH1 CACNG3 FTH1 SPON2 TSPYL1 EIF4A2 PJA2 MYL6B DHCR24 MT-CO2 GSTP1 NDUFV1 ATP2B4 RPL31 JOSD2 WDR47 MRPL51 HSP90AB1 NEGR1 RCAN2 MPI UQCRQ SNAP25 GDA LPPR4 GRINA SERPINI1 GDI1 CAP2 WBSCR17 KCNAB2 NPTX1 CPE BSN PTMA ATP5I CLSTN1 PFN2 DCLK1 UBL5 NUDT21 CA10 INPP5F SERPINE2 GPM6A RPS15 PHYHIP ESCO2 RGS12 NCDN CALM2 PRKCB YWHAQ GABARAPL1 PCDH8 EPHB6 CALM1 C1ORF95 POLR2M TSC22D1 RAB6A B3GNT1 PTK2B NDRG4 SH3BGRL2 PITHD1 MT-ND2 ATP2B2 PPP1CB ACTB PPP1R9B SPARCL1 MSMO1 TERF2IP CAPZA2 SEZ6L2 SYT11 ALDOA RNASEK-C17ORF49 CFH NGRN SYTL2 RAB3B ZNF385D RP11-219A15.1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "mixed excitatory neuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-CYB SNAP25 MT-ND4 MT-CO2 MT-CO3 MT-ATP6 LMO4 ATP1B1 GPM6A PPP1CB PIK3R1 RGS4 CALM2 MT-ND1 MT-ND2 CDK5R1 PRNP NPTXR CCK MT-ND3 RTN1 ENC1 PPIA FKBP1A MTRNR2L1 TSPYL1 JUND SERPINE2 YWHAQ STXBP1 ITM2B SCOC RPS27A UBE2E3 CHL1 PJA2 RHOB NPTN EPHB1 PHYHIP TM2D3 RPS4X PPP3CB COL12A1 SLC1A2 BASP1 ARPP19 GRIN1 BEX4 PREPL FUNDC1 MAP1B ATP6V0D1 STK24 ACTG1 TSPAN7 FXYD7 ARHGAP35 PEX5L PCDH17 DUSP6 HS6ST2 RP11-166O4.4 PPP3CA AK5 RHBDD2 GRIN2A DYNC1I1 RAB11A DYNLRB1 PPA1 TMSB10 NRGN SYT1 MTRNR2L6 MTATP6P1 SLC17A7 COL24A1 RAPGEF5 TCEB1 MRPL37 SPARCL1 CHN1 WASL PDP1 CCDC25 UROD ACOT4 RASGRF2 MORF4L1 NDUFA1 FKBP4 SMIM12 FAM131B KIF3C TMEM65 ARHGDIG GPR56 BRINP3 ENO2 SKP1 DCLK1 TMEM150C DKK3 NAPB GFRA2 ASAP1 MTPN SUMO2 KLC1 DIRAS1 PAFAH1B2 PEG10 PEA15 ANXA7 VSTM2L ATP5C1 SLC12A5 TRIM37 OR6D1P RTN3 NEUROD1 DYNLL1 RP11-111M22.2 DPYSL2 FGF12 CPE TMSB4X CPNE8 PAM GNB1 BAI2 THY1 ATP9A AKAP12 RTN4 RHEB ATP5I GDI1 ATP6V1G1 PTPRN2 NGFRAP1 CLTA KCNC2 ABHD8 NAP1L3 PTGER3 GAPDH SCD5 PFKP RASGRP1 APLP2 ARL8A HMP19 SUB1 PSAP NRCAM DIRAS2 YWHAG WDR47 RAB3B RP11-219A15.1 ZNF385D SYTL2 AC244489.1 PCDHAC1 PCDHA4 PCDHA9 PCDHA10\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "mixed excitatory neuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SYT1 TUBA1B PRNP MT-CO1 HSP90AB1 RTN1 MT-CO3 SEPW1 CCK STXBP1 CALM2 TMSB10 CKB RPL32 MT-ND3 SYTL2 KLC1 ENO2 CALM3 HSP90AA1 PPP3CA CPLX2 RPL31 MMD NDUFB7 MTRNR2L12 ACTB CA11 RPS4X PIK3R1 NDRG4 CALM1 PREPL MT-ND2 CHN1 MAPK1 SLC17A7 WASF1 VSNL1 EIF4A2 TSPAN7 SNAP25 OLFM1 DPYSL2 RPRM SKP1 SOD1 CLU DIRAS2 SNRPN EIF1 CRYM APP RTN3 GPX4 S100A6 RTN4 PSAP STMN1 TOMM7 GPM6A LMO4 GPR158 YWHAB NDUFA4 CLSTN1 ARF3 ATP2A2 RAN IDS NAP1L5 FOXP2 FXYD6 ARPP19 GAPDH NRCAM RP11-111M22.2 RPL38 SARAF SLC30A3 VSTM2A SERINC1 COX5A THY1 CPE NAPB PFN2 APLP1 MT-CO2 MORF4L1 GABARAP HSPA8 MAGEH1 PRUNE2 YWHAZ SNN COX7C EFR3A OXR1 VDAC2 CAB39 TBCB RASGRP1 KRAS ZBTB45 ATP5C1 PRDM8 TGOLN2 NDFIP2 PGAM1 NRGN RHBDD2 CAP2 CEND1 ZNF365 ARL6IP1 TIMP2 RPS12 CX3CL1 ANO3 POLR2I MAP1A PEBP1 CLTA OLA1 RPL26 KIF1A ATP5E PLCXD3 SYT13 MT-ND1 PHPT1 SH3GL2 COPRS MDH2 NEUROD2 TMEM130 GABRG1 BASP1 SUMO3 GOT1 FKBP1A PNMAL1 SRP14 STMN2 TCEB2 CDK17 CFL1 CDK5 SERF2 NGFRAP1 CNTN1 SLC24A2 RNF11 C16ORF13 NGEF RPS28 ARL8B PRDX2 DMTN NFE2L1 TERF2IP ATP1B1 DIRAS1 LMO3 ACOT7 RAB3C SULT4A1 PCSK1N CTXN1 NMNAT2 GRIN2A B3GNT1 GRINA CABP1 SNCB CTU2 MDH1 MT-ND5 CYCS PAM YIPF3 RGS12 BRK1 MAP1B CHMP5 RAB3IP SV2B UBE2N ID1 TSC22D1 RASGRF2 FAIM2 LYSMD2 RPL7 DCTN1 HMGCR BEX2 NAP1L2 DNER C1D LDB2 SNX10 LSM4 BAALC RPL18A RPS26 PDE1A SELM PRKAR1A PCBP1 PPIA RAB40B VAMP2 RELL2 YWHAG ATP6V1E1 ATP5F1 ATP6V0B STMN4 UQCRH MAP4 RPL23A HINT1 EXTL2 TUBB4A PRKCE NHP2 HOPX ALDOA SCN1B CLDND1 PSD3 PCP4L1 MT-CYB STX1B FXYD7 STX1A ATP5B COPG1 BANF1 TAGLN3 CADM2 FGF12 VSTM2L ELAVL2 CTSD ETFB PRKAR1B PJA2 RPS15 PLCH1 GSK3A AP2M1 NCEH1 PEG10 PGM2L1 DCLK1 KIF3C TRIM37 MFN2 CAMK2D PKM TUBB4B CDC42SE2 TPPP ATP6V1A EPB41L3 PEX5L ZCCHC17 NUAK1 ZFAND5 CREG2 DYNLL1 RAB2A SEZ6L2 NME1 AES PFDN4 NEGR1 RORB DNAJB6 SYT11 SERPINI1 GDI1 CERS6 MYEOV2 SPTBN1 UBE2QL1 UQCR10 NEFM PPP1R7 NDUFA12 SYT4 NCALD LAMTOR1 JUND NCOA4 GSTT1 MTRNR2L1 APLP2 EDIL3 USMG5 ANAPC11 NDUFC2 RPL37A IMMP1L ARL8A TOMM22 MYL6 SLC1A2 CHMP4B PI4KA RANBP1 FTL SLC22A17 TUSC2 TOX BEX1 TPRG1L TPI1 KCNAB2 FAM131B LRP1B CD99L2 PTPRN MPC2 PHYHIP ARPC5L RPS27A NREP IQSEC1 RLIM TMOD2 SNCA SLC9A9 NARS TMA7 PTMA HPRT1 CAMKK2 NSF EPHB6 NDUFA13 PSMB3 RP11-20I23.1 ATP6V0C MTRNR2L6 MRPS28 PLEKHD1 FTH1 CAPZA2 RPL17 RPL17-C18ORF32 PCDHGA6 PCDHGA5 PCDHGA10\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "mixed excitatory neuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: CHN1 TCEAL3 PRNP TBC1D15 MT-ND4 NPTN NDFIP2 MT-CO1 TMEM147 ATP1B1 DKK3 LZTS1 PSAP PEBP1 HOPX MAL2 CHL1 ENC1 OLFM1 DSTN NPTX1 RPL31 PTMA HOMER1 SNAP25 PREPL USMG5 ASAP1 ZBTB18 ENO2 DUSP4 GPM6A FAT3 HSP90AA1 COX7C ZFAND5 CDK5R2 BAALC SCAMP5 ACOT7 YWHAQ EGR1 SLC24A2 MT-CO2 PPP3CA LAMTOR5 RAMP1 PRKAR1A NEGR1 HNRNPH2 TPT1 SRP14 DNAJB6 ETFB RPL41 RNF208 CALM2 TSPYL1 RPL35 CNTN1 PRKACB ITM2B FLOT2 RPS6 CDH22 SLC9A6 RSL24D1 NPTX2 CABP1 OR6D1P ARX MDGA1 TERF2IP RPL38 MT-ND1 RPL26 ATP1A3 HINT1 ATP2B2 TAGLN2 SPOCK1 TMEM59L PPIA ABHD8 ARL6IP1 C2ORF80 CPE NPTXR VAMP2 MT-ATP6 NRGN RP11-195F19.5 RPS4X CSDE1 DIRAS2 CREG2 PNMA2 VSNL1 RPS15 GPX4 NRCAM CKB SARAF SGK223 MAP1A PINK1 CAPZA2 SLC25A22 PJA2 ATP1A1 IMMP1L POLR2I MTCH1 FAM219A MTRNR2L12 FXYD6 ID2 RPL11 GABARAPL2 CALM1 RAPGEF5 BAI2 RTN3 GUCY1A3 RPL36A RPL12 MAP4 WASF1 RABAC1 ATP5E GFRA2 REEP5 TGOLN2 ATP6V0C RP11-20I23.1 IDS RPL3 ARFGAP2 RPL21 SYTL2 ZNF385D RAB3B AC244489.1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "mixed excitatory neuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 RAB3B ZNF385D GNAQ CALM2 TMSB10 RPS4X OAZ1 ARPP19 GRIN2A HOPX RPL39 PRKCB SYT1 CALM1 ATP6V1B2 RTN1 BLOC1S1 GPM6A CPE CHN1 GAPDH MT-CO2 PPP3CA ENC1 RPL32 APP CYFIP2 ADAM23 ATP5I TMA7 NRN1 ATP1A3 NEGR1 GUK1 RPS15 NRGN NRCAM TXN RPS19BP1 MAP2K4 TMSB4X NDUFAF2 SOD1 STXBP1 GPX4 H2AFZ MAP2K1 CREG2 GABRA1 BDNF SAMM50 THSD7A RHBDD2 SERINC3 FAM19A1 AES GRINA HSPA4 YWHAH GRPEL1 PFN2 RASGRP1 P2RX6P ATP6AP1 NGEF PSMD12 ACTB VAMP2 RPL37A YAF2 UQCR11 SLC9A6 EGR1 RPS27A RPS26 AK5 CDH7 SERF2 COX4I1 POLR2I AKAP12 SYT13 CLU STMN1 PRKACB MTRNR2L1 RAB40B ID2 CLTC RPL13A MT-ND4L YWHAG JUND NECAB1 HMP19 COX5A ERH HK1 DPP6 AP3S1 IFI6 TLN2 SLC38A1 ATP1B1 PRKCG SYN1 PIN1 DSTN EPS15 PCDHGA5 HSP90AA1 RPL23A CTBP1 ARL6IP1 KIF21A FTL SLIT1 TMEM35 DNAJA1 MORF4L1 UBQLN2 UQCRFS1 FXYD6 MTRNR2L12 BAI2 SPTBN1 ARF3 NREP PPM1A CRIP2 SPRN CAMKK2 RP11-111M22.2 MT-ND3 C1ORF56 WSCD1 NDUFB3 COX5B ATP2A2 NHP2L1 OLFM1 PRNP NGFRAP1 SUB1 NDRG3 RPL31 CNTN1 CAB39 BSG PPP1CB HDLBP PREPL TOMM20 CEND1 AP2M1 CLSTN1 WASL QKI PEBP1 YWHAQ ANXA7 NDUFB2 AZIN1 SKP1 WASF1 KCNK1 SNAP25 PCP4 DNAJC21 TBC1D15 CFH MT-ND4 IDS NDUFB8 ARF5 MTRNR2L6 RP11-219A15.1 NSF TUBB3 MCHR2 RPL21 TPD52 CYB5R3 OPRM1 SYTL2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "mixed excitatory neuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MT-ND4 MT-CO1 PEBP1 VSNL1 PPP3CA MT-CO2 RPL37A NDUFS5 CHN1 ACTB MT-ND3 LAMP5 MTRNR2L1 OLFM1 MAP2K1 RPS27A OXR1 MED10 NPTX1 COPRS FAIM2 RHBDD2 MYEOV2 GRIN2A SELT NDUFB5 COX6B1 DYNLL1 ENSA JUND SERINC3 EDIL3 RPS6 PPIA KCNV1 CLTB RPL15 MIR6723 GSTO1 DPYSL2 RPL35 SPON2 DNAJB6 STXBP1 VWA5A DIRAS2 IDS SEZ6L CPLX3 NDUFA4L2 KCNAB2 SLC17A7 RASGEF1B TMA7 SOX9 CHCHD2 MT-ND2 VAMP2 TMSB4X PFDN4 MAST3 IGFBP5 CSDE1 ATP2B2 GPM6A RPL32 ALG10 RPL31 HOMER1 ATP1B1 COL9A1 MLLT11 RTN4 NPTXR PDE1A RP11-111M22.2 BANF1 C18ORF61 ENO2 NCBP2-AS2 PIK3R1 SNRPE BSG PITHD1 RPS4X ANXA7 MAGED1 GMFB NGEF CALM1 MTRNR2L6 SERF2 RPL21 RPL3 CFH RPS26 RNASEK-C17ORF49 NSF RPL36A HNRNPA1P40 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "mixed excitatory neuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SYT1 MT-CO1 MT-CO3 MT-CO2 STMN1 ATP1B1 SNAP25 CHN1 TMSB10 MT-ND4 MT-ND3 MT-CYB CKB RTN4 ITM2B SPARCL1 STXBP1 MAPK1 PPP3CA RTN3 CALM2 RPL8 CALM1 APP PRNP HSP90AA1 TUBA1B ACTB NDRG4 TUBA1A PREPL CYCS VAMP2 GNAQ IDS PEBP1 SLC9A6 ENC1 MT-ND1 CLU GPM6A DNAJC21 KCNC2 ATP5B CLSTN1 ARPP19 PHYHIPL GABARAP AP2S1 THY1 TUBB2A RPS28 RPL6 COX7C RTN1 MAP2K1 MT-ND2 ENO2 MT-ATP6 NGFRAP1 SLC24A2 STMN2 RGS4 TPPP INSIG1 WDR47 RAB3C DPYSL2 UCHL1 PJA2 CALM3 CBX6 TAGLN3 NPTN YWHAZ COX5B AP1S2 EPS15 C14ORF2 SCN1A NDUFA11 MAGED1 KCNA2 BTBD10 PLD3 PGM2L1 MAP1B CADM2 COX6C VDAC3 GAP43 TMEM258 FXYD6 KLC2 BASP1 COX7A2 VSNL1 PFN2 RAB27B STMN3 NNAT SERINC1 MAP1LC3A CCK GUCY1A3 KLHDC3 TSC22D1 RAB2A EIF4G2 ARL6IP1 NAP1L2 TOLLIP RAN UQCRQ SNCA SYT11 TRHDE SYT4 RAB3A RSPO3 SARAF PNMAL1 DIRAS2 CCDC85B CSDE1 NDUFB8 NGEF PI4KA MDH1 CREG2 FAIM2 AP2M1 HSP90AB1 PCBP1 MTRNR2L1 ATP2B2 UQCRH DMTN NDUFA1 TSPAN7 DCLK1 RPL38 MPC2 BEX2 APLP1 ACTG1 CYFIP2 DKK3 PCP4 ARHGAP35 FAM127A ELAVL4 SEPW1 NECAB1 NRCAM RPRM C12ORF57 NDFIP2 APLP2 ATP6V0C RP11-20I23.1 NSF TCEAL2 CDK5 HIGD1A RPL39 ARFGAP2 NDUFC2 RAB11A FAM131B RASGRP1 UBL4A SLC12A5 BEX4 LAMTOR2 DYNLL1 BRK1 CAMK2G CLIP3 CDH8 C11ORF31 PCSK1N RAB3IP COX6B1 PTGES3 RPL15 ASAP2 LANCL1 PTMA CCDC69 APBB1 SNRPE SPTBN1 ATP6V1G1 TPT1 RFK CRYAB MT3 ATP5I BCAP31 ADORA1 NDN FAM219A OXR1 CA11 ARF3 ARHGAP29 LPPR4 SCD5 INA MRPL37 SLC25A11 KCNAB2 RPS2 MYL6 ATP5E TOMM70A SLC38A1 FXYD7 TSPYL4 PNMA2 KLF10 TUBB4B GUCY1B3 UQCR10 NUDT21 TMEM59L LDB2 VPS35 ZNF385A PRKCB LDHB SUCLA2 KIF1A PITPNA HCN1 PLCXD3 NEUROD6 PRKACB ALG3 SYNGR3 KCNK2 YWHAB MT-ND5 ALDOC SNRPN NAT8L WSB2 SV2B PTPRT TMLHE PSAP CNR1 SPHKAP EFHD2 NCEH1 ARHGDIG BEX5 RPH3A SPOCK2 GAPDH GDI1 PSD3 CRIP2 HINT1 PTPRS PIK3R1 MRPL20 ITFG1 TMOD2 CDH13 PTK2B ATP1A1 WBSCR17 TGOLN2 PRKAR1A SLC25A5 CLTC C9ORF16 SEZ6L UBA1 RPL41 CLSTN2 C1ORF233 SLC39A10 PPP2R4 GABARAPL1 NREP SLC17A7 ATP6AP2 RNF11 HTR2A ATP6V1A YWHAG PRKCE DRAP1 SLC25A4 SEC61G FAM3C PHYHIP NGRN CCDC115 COL12A1 C12ORF49 CDK5R2 HAPLN4 KCNK1 ADAM23 ATRN HOMER1 TOMM34 PPIA POLR2I UHMK1 ATP6V1F ANXA6 ZFAND5 GRIN3A TMSB4X KIFAP3 ATP9A PTPN20A FGF12 CAPNS1 PEF1 EPHB6 CTSD NTN4 NDUFB4 NCDN STX1A NRN1 MAPK8IP2 COL11A1 CETN2 PPA1 NDUFA13 NAP1L3 WASL SMIM13 ATP5J2 RORB NAPA LIMK1 SLC1A2 RPS6 CFL1 FABP3 KIAA1045 ATP5G3 CCDC25 CISD1 ELAVL2 TMEM52B TCEB1 ISCU TMEM70 LMO3 SRP14 NCAM2 SYNJ1 RPL32 TCEAL5 TOMM22 ENSA ATXN10 GLRA3 ATP2A2 AKAP12 RBX1 PHPT1 MTX3 SYNPO SNRNP25 TLN2 MAP4 TBCB AZIN1 NMNAT2 COX4I1 SELM OPA1 OLFM1 EIF1B SLC22A17 PSMD2 UQCR11 GRIN2A PPP2CA TXNDC17 CPE TOMM20 UBC NDUFB1 CEND1 USMG5 YWHAH EXTL2 MYL6B UBE2V2 TLE4 C7ORF50 SIRPA PGRMC1 RAP1GAP2 ATP6V1B2 SSBP3 MAP2K4 RPS27A MORF4L2 RXFP1 RPL37A GNG3 ALDOA SH3BGRL3 ARPC5L PRDX5 LHFP FSCN1 ARL6IP5 ABRACL JUND TMEM155 MRAS PPP1R9B RPS4X RCAN2 TPI1 MT-ND4L BEX1 DCTN1 SKP1 TM2D3 ACTR1A ATP6AP1 EPB41L3 GUK1 SERPINI1 GDE1 PCMT1 NELL2 SPOCK1 NEXN PFDN4 SERF2 UBE2N OXCT1 PPP1CB RPS15 ATP6V0E2 TUBB NUDT4 TUBB3 MTRNR2L6 PGAM1 FTH1 ZNF385D ESCO2 RAB3B SYTL2 LAMTOR5\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "mixed excitatory neuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: CALM2 MT-CO2 MT-CO1 RTN3 MT-ND4 MT-CO3 ATP1B1 SERPINI1 SYT1 CHN1 PFN2 ELMO1 EFR3A MTRNR2L1 CCK NRGN SNAP25 CABP1 BASP1 PSAP TMSB4X MT-ND3 GPX1 RTN4 APP DPP6 RPL31 PGAM1 SCN3B SERINC3 MT-ND2 RTN1 ELAVL4 GAP43 BCKDK NELL1 ANXA7 DYNLL2 NCAM2 ANGPTL4 PRKCE STXBP1 ATP5A1 FXYD6 MGST3 GABARAPL1 TUBB4A RPL15 CDK5R1 ENO2 PDP1 PNMA2 GOT1 HMGCR TRMT112 DCTN1 MTRNR2L12 C4ORF3 NME1 PPP3CA CKB IPCEF1 GUK1 VSNL1 SV2B SSBP3 COX7C MT-ND4L RABAC1 AQP4 HOMER1 MAP2K1 UROS LMO4 PKM AKAP12 MAP1B PDLIM5 PCGF1 RAB11A NSF GNB1 NDRG4 SLC22A17 NMNAT2 MAL2 PPP2R1A ESYT1 BEND5 TOMM70A YWHAZ FBXO2 SLITRK1 CADM2 PRDM8 SGCD CBX6 NAP1L3 DYNLL1 RPS3A TUBB4B TESPA1 CDS1 PEF1 RPL21 PACSIN1 STMN1 TMSB10 GPM6A OAT APLP2 RHBDD2 UQCRH KIFAP3 DDN ATP9A NREP ARF3 RGS4 AP2M1 ATP2B4 MPI NDFIP1 FSCN1 SNCB AP1S1 ACTR1A RPL26 MAPRE2 SLC25A6 GPR88 PTPRZ1 ARPP19 CMAS RAB6B CDC37 GRIN2A TUBA1A RPL12 OLFM1 RHOA STMN2 ABHD14A ACTB BAG4 FXYD7 GFRA2 NPTXR CYP2R1 PDE1C RPS26 QDPR D4S234E ADORA1 STRAP TUBA1B PRNP VAMP2 ATP6V1B2 RNF208 FGF12 HSPA4 TSPYL1 NEFL PHYHIP RASGRF1 ASAP1 MIEN1 TUBB2B MAGED1 RPH3A TM2D3 CDK5R2 RPS15 EIF4A2 CPE UQCRB UCHL1 SEZ6L2 FKBP8 LYNX1 FAM127A CEND1 ENC1 RAP1GAP2 CTXN1 SLC24A2 ZFAND5 DCLK1 FAM163B COX7B VDAC3 ARF1 SPOCK1 FKBP1A PPP2R2B ATP6V0D1 RAB7A IQSEC1 TSPAN7 MTRNR2L6 GUCY1B3 MYEOV2 RPS19BP1 HOPX SNRPN EIF1B PTPRS RAB2A TPI1 RPL3 BSCL2 IDS ZNF385D ARFGAP2 SYTL2 PLEKHD1 HNRNPA1P40 RAB3B ESCO2 PCDHA9 PCDHAC1 PCDHA4 PCDHA10\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "mixed excitatory neuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SYT1 CCK RPL7 SNAP25 MT-CO2 RTN3 RPL3 SNRPN MT-ND1 PPIA CLU HSP90AA1 CALM2 CALM1 TUBA1B ENSA COX7C SV2B FTL NPTX1 ATP6V0B RPL11 PREPL APBB1 MT-CO3 TPI1 STMN2 ENC1 GAPDH SERF2 FAIM2 CHN1 USMG5 ATP6V1G1 NDUFB5 EDF1 MT-ND2 RPL6 TMA7 RTN4 RPL37A RPS27A APLP2 SPARCL1 RPS15 NAA38 YWHAH SLC39A10 FABP5 THY1 PDE1A GABARAPL1 NCAM2 ENO1 TBC1D15 SYTL2 RAB3B ZNF385D GUCY1A3 OXCT1 C19ORF70 CISD1 NDUFA13 ACTB B3GALT2 SLC12A5 COX7A2 GUK1 LRRC59 RPS10 TUBB4A DYNLL2 RPS28 TMSB4X PSMB5 MT-CO1 GALNT14 TMSB10 TMEM35 PET100 GHITM FIBP ELMO1 SIRPA RPL12 CCT5 PEBP1 APP RPL13A HOMER1 PAFAH1B2 PIN1 LMO4 CRIM1 NUAK1 PSMD8 TESPA1 CCDC183 SYNPO WDR47 KIFAP3 PSAP NTN4 NRN1 SLC17A7 RP1-152L7.5 UBL5 SSBP3 PPP3CA UBB PNKD GUCY1B3 SCN4B GDE1 PI4KA BIRC5 FTH1 NBL1 KCNMB4 OLFM1 DCTN1 SYT4 NELL2 ACTG1 NDUFAB1 LAGE3 GDA RPL26 NCEH1 STMN1 ATP5H SPCS2 VAPB GLO1 ANKRD20A11P PPP2R2C CKB MT-ATP6 UQCRB TUBA4A PJA2 NDUFB7 OXR1 MAPRE2 RFK CERS6 HSPE1 MRPS7 BASP1 SH3BGRL2 PDP1 COX6B1 PCMT1 LMBRD2 MLF2 BSN SAP18 CLDND1 OPRK1 PRKCB SPRYD3 H2AFZ MT-ND3 IGFBP5 SELT SERINC1 ATP5O ACAT2 PFKP SUMO2 ATP5J OPA1 SELM NEUROD2 UCHL1 TAGLN3 SULT4A1 APLP1 SEPW1 KIF21A MRPL20 ADAM23 EID1 MAP1A RPS6 CYFIP2 NFE2L1 UQCRC2 TMEM65 PSMD12 GDI1 TM2D3 FXYD6 DYNLL1 RPL8 RPL15 SERPINF1 RNASEK-C17ORF49 RPL41 ATP6V1G2 RPS3A RP11-597D13.7 DNAJC21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "mixed excitatory neuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 SNAP25 MT-CO2 MT-CO1 HINT1 ARF1 UQCRB PRKCB RAB3B GRIN1 NRGN RPL37A PHYHIPL RTN1 VSNL1 SERF2 GNAQ GRIN2A RPL32 ZBTB18 SPTBN1 ENO2 GPM6A PRKACB EIF4A2 RPL13 CAPZA2 PRKAR1A AK5 MT-ND2 ARPP19 NAT8L APLP1 RPL38 ATP5J2 ALKBH1 HSPA8 ARL6IP5 RAB1A CDH7 RPL39 CHL1 CALM2 ELMO1 ATP6AP1 SUMO2 LDB2 LUZP2 RPS6 RLIM DDAH1 PKM NEFL NDFIP2 PSMC3 RPL23A ATP5G2 PCBP1 ATP6AP2 CERS6 ATP6V1G1 JUND WBSCR17 MAP1LC3A MTRNR2L12 SCD5 RPL6 YWHAZ THY1 HOPX ATP5G1 DNAJC21 RSL24D1 MAFB PSMC5 DYNLL1 OAZ1 AES NDUFAF2 SPOCK3 COX6A1 CLIP3 SLC39A10 IGSF21 MT-ND4 PNMAL2 MPI ATP9A SLC22A17 SMAP2 RPS26 RPS15 TPT1 LGALS1 DNAJB6 TIMP3 TMSB4X NHP2L1 NDRG4 BIRC5 PJA2 SCN1A SOD1 SYNGR3 TMEM141 ACTG1 FAIM2 INA EDF1 NAPB CAPZB RASGRF2 BSN SLITRK1 RPS4X NDUFA8 PNMA2 NPTN STXBP1 CDC42SE2 PEBP1 PTPRS YWHAG DRAP1 PRKAR1B CPNE8 IDS MAP1A SNN MMD MRPS21 TBCB CTU2 MAPK8IP2 PDLIM5 SNX3 CCK BAI2 PROM1 SCOC NCBP2-AS2 HOMER1 RAPGEF5 PPP3CA SERPINE2 GAPDH AQP4 NARS NDUFA4 NDUFA5 MT-ND3 NCAM2 CORO2B RPL31 COX4I1 RPS27A NRSN2 POLR2I RGS12 HK1 TSC22D1 SV2B BNIP3 AIMP2 UQCRQ CDK17 ATP1A1 SOX6 PDP1 ARPC4 MAST3 LMO4 NDUFB2 CALB1 DYNLL2 POLR2K ITM2C SYNJ1 RPL21 RPL17-C18ORF32 GABARAP C18ORF32 RPS3A RPL7\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "mixed excitatory neuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-ND2 ZNF385D MT-CO3 CHN1 MT-CYB SYTL2 MT-ND4 MT-ATP6 SYT11 NRGN RAB3B VAMP2 MAP1B CLIP3 PEX5L TMEM130 ATP9A APP MT-CO2 NELL2 YWHAB CLSTN1 RPL37A CALM2 UCHL1 KLC1 SNAP25 SYT1 LDHB C4ORF3 MAL2 NPTXR PDP1 AP3S1 VSTM2L ADAMTS9 AP2M1 COX6B1 INPP5F MT-ND1 NGFRAP1 CDK5 SV2B STMN1 CLU HMGCR TCEB1 CHL1 VPS35 RAN NDUFC1 HSP90AB1 TLN2 TIMP2 ETS2 SEPW1 TMEM258 PJA2 RGS4 SPTBN1 RAB7A CALM3 SERP2 WASF1 UQCRB USP27X BEX2 ARL2BP ATP6V1F RPL23A UBA1 MAST3 RAB6A EPDR1 DIRAS1 HOMER1 RHBDD2 TPPP LMO3 MYL12B SLC8A2 NDUFA11 H2AFZ PSMD2 FKBP8 BANF1 VDAC1 EID1 GHITM C14ORF2 APLP2 PIK3R1 WASL PCBP1 TOLLIP ARL6IP1 CADM2 CHCHD2 SIRPA TPD52 RPS28 UQCRQ ACTR10 CREG2 GPX4 NAPB MTRNR2L8 SLC38A1 NECAB1 SLC22A17 ARPP19 CD63 RTN4 DPYSL2 SCN2B RPL31 BTNL9 CLTA PPP2CB STXBP1 PHYHIPL TMSB10 GDI1 ENC1 DCLK3 PODXL HINT1 SPOCK2 TPT1 OLFM1 AP2B1 TMEM117 ITM2C PCDH8 ENSA SKP1 HSP90AA1 KIF5A PHYHIP MTND1P23 CNTN1 PRNP NBL1 EIF4A2 ATP5J2 ATP6V1G1 LGI3 ARHGAP35 PPM1A SDCBP SPARCL1 CAMK4 LINGO1 C12ORF57 LPPR4 SERINC1 MIEN1 GUK1 CDK5R1 PGRMC1 SNX10 WDR47 TBC1D15 FRMPD2 IDS FTH1 RPL41 RPL3 RPL6 BSCL2 GABARAP SNRPN NR1I3 PI4KA\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "mixed excitatory neuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 SYT1 SNAP25 MT-CO2 MT-CO3 ACTB NRGN MT-ND4 MTRNR2L1 RPL31 MT-ND2 CALM2 PREPL GPM6A DYNLL1 MT-CYB PRKCB CRKL KCNA2 BASP1 FAIM2 NPTN TUBA1A ATP1B1 PTPRT OAZ1 EPHB6 CADM2 APP WBP2 STMN1 MORF4L1 CLPTM1 ENSA CDK5R1 IQSEC1 EZH2 MT-ATP6 TSPYL1 MTRNR2L6 SYN1 PRKACB DNAJC6 STXBP1 GHITM EGR1 VPS35 THOC7 NECAB1 CHL1 SERINC1 C1ORF115 EIF4A2 APLP1 NAP1L5 RNF208 PLCB1 RPRM RTN1 PNMA2 PLCD1 TBR1 PPP3CA MAP1B NDFIP1 MT-ND3 PPP2CB SNN NPTX1 ATP5A1 PTMA PPP2R2B HDDC2 EPS15 CAMK2D APLP2 OAT SCN1A LAGE3 SIRPA ATP6V1A SEZ6L OLFM1 WASL RPS27A ARL8B NCEH1 TAGLN3 STMN2 PEBP1 ARPP19 MT-ND1 HMP19 NGRN EFHD2 ELAVL2 CDC42SE2 TOMM20 SUB1 PTPRS SYN2 AP1S1 SCD5 LINGO1 PGM2L1 COX7A2L FAM174A ATP5I CCDC115 SERINC3 CA10 DYNLRB1 CALM3 KCNC2 REEP5 KCNA1 MAGED2 SLC17A7 ATP6V1C1 PNKD EIF1B STX1A PJA2 MORF4L2 ZMAT2 CTBP1 SCN2B PHYHIP ATPAF1 COPRS DPYSL2 LDB2 MAGED1 ZFAND5 SYT4 MLLT11 GUCY1B3 CYP26B1 PDE1A CDK14 CSDE1 GABARAPL2 VSNL1 RAB3B NUAK1 KLHDC3 SLIT1 CPLX2 CHCHD2 PPIA CADPS2 CDK5R2 AP2B1 PPP2R2C PBX3 ATP6AP2 FXYD6 CAMKK2 PCMT1 ZBTB18 UBQLN2 TMTC4 ATP5J NPTXR NDUFB10 RPH3A SH3BGRL2 GABRA1 RAP2A NDUFA4 KIFAP3 LIMK1 TSC22D1 PRDX5 GYG1 PITHD1 MED10 DPY30 OTOA VSTM2L YAF2 JUND TOMM70A CALM1 SPTBN1 IPCEF1 AP2M1 LDHB PRUNE2 PNMAL1 SNCB MRAS WSB2 TSPYL4 OPN3 C1ORF52 ARHGDIA UQCRH C18ORF21 PHYHIPL ATP2B4 NKIRAS1 GDI1 PFKP ITM2C PSD3 RAB3A NRSN2 NDUFV1 ZNF174 SLC24A2 RP11-111M22.2 TGOLN2 TCEAL7 GRIN2A SERPINI1 RTN4 ATP9A KCNC3 TBCA EHD3 BNIP3 GAP43 BHLHE40 ATP5F1 NAT8L DKK3 ATP1A3 PEX5L NAP1L2 SCN1B ARL8A BEX5 RAB27B FAM3C MZT1 NDRG4 EID1 PEA15 REEP2 CKB NELL2 BAG4 CLTA B3GNT1 MTCH1 YWHAG RAB6A CDR2L SULT4A1 TUBB4B VDAC3 CYFIP2 CFL1 CAB39 BEND5 RTN3 HSP90AB1 MAP2K1 SRD5A1 NCALD COX7C ASAP2 RPL41 ATP6V0C FTH1 RP11-20I23.1 CFH RPL7 TF PCDHGA5 PCDHGA6 PCDHGA10\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "mixed excitatory neuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: CALM1 SNAP25 CALM2 RTN4 MT-CO1 SYT1 MT-CO3 MT-ND2 CLSTN1 CHN1 MT-CO2 RAB3A GAPDH PPP3CA PRNP CPE RTN1 PRKCB PSD3 GABARAPL2 PPP3CB ATP1B1 CAMK4 NPTX1 ANXA6 SLC8A2 UCHL1 PSAP ATP2A2 MAP1B NDUFA13 OLFM1 MTPN RTN3 SCN1A CAMK2G PGM2L1 RP11-111M22.2 MT-ATP6 VSNL1 MT-ND4 HSP90AA1 RHEB TSPAN7 PLD3 YWHAB INA GHITM C14ORF2 FXYD6 SERPINE2 TMSB4X TMEM130 TOMM20 RPL15 MTRNR2L12 CADM2 RAN HTR2A AK5 EIF1AX CDC37 CDK17 SCAMP5 RGS4 GPX4 OXR1 BEX1 SULT4A1 MLLT11 TMX4 OPN3 GPM6A SYT4 STMN1 ATRN ARL6IP5 YWHAH ARPP19 SLC12A5 PSMB5 ARL6IP1 VAMP2 FARSA WDR47 TMA7 NEFL NELL2 APLP2 UQCR10 FAM19A1 ATP5B APP EHD3 OCIAD1 MAPK1 NDFIP1 CTNND2 ATP9A ANO3 CREG2 TPPP TMOD2 CADM3 TMEM59L RHOB EIF4A2 ALDOA RAB3B SYTL2 ZNF385D TUBB2A NDUFB11 PLCB1 ATP5I EIF4G2 ATP6V1A BCAS2 ATP6V1F GABARAPL1 SPOCK1 CDK5R1 VDAC1 TRIM36 EFR3A PEBP1 NFE2L1 SKP1 ATP6V0C NAP1L3 ENOPH1 CTSD MAPRE2 LRFN3 RAB6A DYNLL2 RAMP1 RPL13 MT-CYB WSB2 DGKG RASGRF1 NCDN RAB1A APLP1 VPS35 SLITRK1 CFL1 DYNLRB1 DIRAS2 SH3GL2 PDE1A FAM134A IGFBP6 PIK3R1 ACTB SLC9A6 ZCCHC17 PHB FABP3 PPARGC1A COPS7A ASAP1 CRYM HINT1 PITHD1 ZBTB18 ATP1A1 SOD1 CA10 TUBA1B BAALC EPB41L3 POU3F1 C14ORF132 RPL41 PDP1 CX3CL1 SNCA RLIM SERINC1 LDB2 NGFRAP1 DLX1 PPP2R2C MTCH1 DYNLL1 DYNC1I1 MORF4L1 NECAB1 RORB RASGRF2 TUBB4A UQCRB CAMKK2 C1D ATP2B4 ARL4D NDFIP2 SLIT1 C1ORF115 SYT5 CHGB AZIN1 PPTC7 LAMP5 FTL REEP5 SRP14 KLHDC3 TOMM70A ATP6V1E1 MMD TUSC2 GOT1 SYT3 SLC39A10 ITM2C SLC22A17 LYNX1 ATP2B2 PREPL CORO2B IQSEC1 TRIM37 COX6C LINGO1 KIF21A PNMA2 MTRNR2L1 TCEAL7 UBA1 IGFBP2 ENO1 ENC1 TSC22D1 RPL32 BNIP3 ALDH5A1 NRN1 C11ORF31 NRF1 ALDOC ARL1 ARHGDIG FKBP1A CHCHD2 SCD5 PRDX1 RRAGA GNAQ VDAC3 MLF2 STMN2 LRRIQ1 LPPR4 CBLN4 PNMAL2 YWHAZ TESPA1 KIF5A ITFG1 GDE1 CAP2 NRGN MT-ND3 DCTPP1 CLU SERINC3 SLC17A7 CAB39 ENO2 SYT11 UQCRC2 DCLK1 GNB1 SYN1 NAT8L FAM131B MTATP6P1 RBX1 TCEB1 DKK3 ATP1A3 GRIN1 SDCBP RP11-20I23.1 DPP6 GAP43 PTMA MYEOV2 ATP5J AP1S1 COX6B1 PGRMC1 APEH CD63 APBB1 NGEF NAP1L2 KLHL1 C12ORF49 ATP6V0B DDAH1 ETS2 GPR26 CCK ATP5G3 MT2A COQ10B C2ORF47 SV2B BASP1 CALM3 TPT1 RAPGEF5 IGSF21 MT-ND1 ACTG1 RAB3C SERPINI1 IDS GPR158 CACNG3 HDLBP F8 TSPYL1 ATP6AP1 PRKAR1B CD59 BTBD10 ATP6V1B2 SCN2B STUB1 KCNV1 SUMO3 GRIN2A MAP1A CERS6 GPR150 CYP26B1 HOMER1 PHYHIP SUB1 HSP90AB1 ATP6V1G2 RNASEK-C17ORF49 EPHB6 MIF PLEKHD1 NR1I3 PCDHGA5 PCDHGA6 PCDHGA10 DNAJC21 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "mixed excitatory neuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: TUBD1 CHN1 SNAP25 TSPAN7 MT-CO1 CLSTN1 SERINC3 MT-CO2 CTGF SPARCL1 RAP1GAP2 ATP1B1 TMSB10 CALM3 NPTX1 TMSB4X KCNAB2 HSP90AA1 PCDH17 ADCYAP1 GNAQ SPTBN1 NRGN BRK1 MT-CO3 CALM2 THY1 TSC22D1 GAPDH LANCL1 SYT1 SERPINE2 RTN1 PRKCB PPP2CB RASGRF1 PPP3CB KCNK1 ATP5F1 RPL26 NCEH1 TENM3 PSMB7 SYN2 NEGR1 FAIM2 DNM3 DSTN VSNL1 SLC25A4 RPL10A ITPR2 PTK2B CCDC85B ALCAM RCAN2 EIF4A2 MAP1B PKM TUBA1B UBL5 TRIB1 RAB6B HRK ETV1 UBE2N APLP1 INPP5F C11ORF31 ST6GALNAC3 PRKACB DUSP6 TLE4 CAMK2D OAT PACSIN1 ATP6V0B NGFRAP1 RPL31 SEPW1 BEX1 TMEM147 OAZ1 MTRNR2L12 DKK3 MAP2K1 SLC38A1 PGM2L1 C19ORF43 NDUFB11 CPE HSP90AB1 SPOCK2 MYL6B ACTB YWHAH VGF EID1 PGAM1 PPP1CB TOMM34 CABP1 KLHDC3 MPP1 EPDR1 MBP SLC1A2 ENC1 IFI6 DDN RP11-111M22.2 YWHAG MORF4L2 PRNP LHFP RPL6 ATP6AP1 RPL8 RPL15 LINC00087 FTH1 RPS26 COX6A1 FLOT2 CAPZB YIPF1 KLK7 APP CTSD STX1B ENSA CLU PFDN1 SLC22A17 C9ORF16 SLC12A5 GDA PEX5L AP2M1 TMX4 SYT11 REEP2 ASCL1 KIF3C ENO2 PPP3CA RASGRP1 LMO3 HNRNPH2 MT-ND4 DCLK1 RPS28 PTCHD4 SYTL2 LINC00116 PMEPA1 PRKCG PHYHIPL RTN4 ATP6V1G2 RPL7 TUBB3 LYNX1 ALDH5A1 PCDHGA10 PCDHGA5 PCDHGA6\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "mixed excitatory neuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RAB3B ZNF385D SYT1 NR1I3 RPS15 RPS27A TAGLN3 TF ATP1B1 PPP3CA TPT1 MTRNR2L1 FTL ARPP19 ATP5I RPL38 FTH1 SNAP25 RPL6 TCEAL3 AP2M1 VSTM2A CAMKK2 SERPINE2 ALDH5A1 CLTC UBB CABP1 RPL31 C14ORF2 STXBP1 SERF2 RELN TMEM155 BCAP31 SPON2 GHITM BASP1 RPL11 NPTN ENO1 SEC61G UCHL1 LMBRD2 PFDN1 RPS6 SERINC1 SLC25A22 TOMM7 ACP1 SELT ADAM23 SARAF RPL8 EIF4A2 MAP1B NDFIP1 DYNLRB1 CALM3 IDH3A MRPL52 PREPL CALM2 SLC17A7 MYBPC1 GRAMD3 PPP3R1 GRIN2A GAP43 CAPZA2 FAM84A TKT PACSIN1 SCD5 NELL1 CHL1 HOMER1 PDP1 TUBA1A SDK2 RPL37A SLC8A2 TMOD2 PPP1R7 CD59 TCEAL2 NELL2 PGAM1 HSP90AB1 SLC22A17 UHMK1 KLHDC3 ENC1 PEG10 DNAJB6 SSBP3 KCNMB4 RPL32 RGS4 CMAHP TOMM70A PHYHIP CDK5R1 UQCRB DDR2 ITM2B SYNGR1 SYT5 ATP6V0B CYFIP2 TUBA1B COX6A1 PSAP OR6D1P CHN1 GABARAPL2 SEMA5A GRINA YWHAZ RAP2A PFN2 EIF1AX PRKCE APP RPL41 SMAP2 RANBP3L RPL26 NDUFB8 MDH1 NEUROD2 TMEM59L ARFGAP2 MTND2P28 MT-ND2 IDS MTRNR2L6 NSF CYB5R3\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "mixed excitatory neuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SYT1 SNAP25 MT-CO3 MT-CO1 MT-ND4 MT-CO2 TMSB10 MT-ND2 CADM2 COX6C MT-ATP6 ATP1B1 PPP3CA MT-ND1 TMSB4X RPL31 APP STMN2 DPYSL2 PRNP CCK MT-CYB RTN1 ATP6AP2 RPL26 HSP90AB1 SPARCL1 TSPAN7 GAPDH OLFM1 RPL13A RPL37A MTRNR2L12 NGFRAP1 GHITM TSHZ2 PFN2 ITM2B FAIM2 RPS2 YWHAB MAGED1 THY1 ARPP19 MTCH1 EIF1AX MAP4 GOT1 MTRNR2L6 RPS4X CLTC ATP5J STMN1 EIF4A2 BASP1 TPT1 NDRG4 DCLK1 RPL41 PPP1CB RPL3 NRCAM CAMK2G UQCRH UQCRB ATP6V1C1 SEZ6L2 PHYHIP MTATP6P1 INPP5F RPS12 COX7A2 RTN3 EIF4G2 YWHAG EPS15 EFHD2 PSAP CLSTN1 MTRNR2L1 HTR2A MAP1B TPPP STXBP1 UQCR11 KCNAB1 SERPINI1 HSPA8 YWHAZ HNRNPH2 ACTB SAP18 C14ORF2 PKM RPL7 STX1B TUBA1B NFE2L1 TSC22D1 ATP6V0C RP11-20I23.1 RAB3B SLC6A17 PTGDS RAB1A RPL23A SLITRK1 RORB LMO4 CNRIP1 CKB UQCR10 SCAND1 B3GNT1 BNIP3 PPA1 ATP6V1B2 SERPINE2 RPL12 GABARAPL1 RAP1GDS1 ATXN10 SQLE CALM3 YWHAQ RPL6 CAP2 IGSF21 USP27X CRYM CALM1 MTND1P23 DNM3 MYEOV2 FOXP2 RHOB RHBDD2 COMMD6 QDPR PNMA2 CDC42SE2 GDA PPP2R2B NEGR1 BSN ARL6IP5 RAB3A AZIN1 RLIM RXFP1 GPM6A KIF3C GPX4 RPL13 CFL1 EDIL3 CHN1 NDUFB4 SYT11 ABRACL PJA2 SLC17A7 NDUFA11 GNG3 ATP5J2 SV2B KIF5A HINT1 MT-ND3 CALM2 PTPRN2 MARCKS LAMTOR5 SERF2 MLLT11 FXYD6 SARAF NDUFV1 UBB CDK5R1 USMG5 TRMT112 WDR47 DMTN TMEM35 AP2M1 F8 ANXA6 PEA15 TOMM20 NDUFA12 ACTG1 OCIAD1 OAZ1 C19ORF43 VDAC1 COX7A1 SNCB NGEF ANO3 DYNLRB1 GAP43 CABP1 APOE FAM3C PEF1 EGFL7 PSMA7 PRKACB RPRM DKK3 LANCL1 SCD5 IDI1 NAP1L3 ARL6IP1 TSPYL5 MAPK1 ATP6V1A HEY1 FASN CBX6 MYL6 ATP6V1E1 DYNLL1 ATP6AP1 S100A6 SCAMP5 ALDOA KCNC3 ENC1 LRP1B MAP2K1 BEX1 NDUFA13 SNX10 RTN4 SERINC3 NPTX1 ATP1A1 GRM3 PTGES3 PPP3CB MAP1A PHYHIPL DHCR24 PRKCE FAM131B PRDX2 SCOC PINK1 SLC12A5 MRPL33 RAB27B C20ORF24 NDUFB2 PSMD12 SLC9A6 NOV NDUFS5 MSMO1 ABCC12 BEX4 PRPS1 PSMB7 APLP2 SLC24A2 DSTN NGRN NAT8L VDAC3 RPL36A C4ORF3 RPS6 GRINA LPAR2 MAP2K4 PGRMC1 SSBP3 PPDPF SCN1B DCLK3 NPTXR NDFIP1 PITPNA GRIN2A RPL11 PGD PDE1A KLC1 COX17 HPCA CTNNB1 COPS7A FXYD7 PIK3R1 TSPYL1 NNAT UBL5 CAMK2D RANBP1 COX5A KCNH5 LPPR4 ELAVL4 ELAVL2 COBLL1 NDUFAF3 NAPB SLC25A22 AP3S1 CREB5 C10ORF10 RHEB ABHD14A SYNGR1 HIGD1A B3GALT2 MT-ND5 ENO2 VAMP2 RPS27A UBE2L6 DMKN APBB1 FAT3 ITFG1 RPL21 TF RNASEK-C17ORF49 NSF IDS RPS3A HNRNPA1P40 PLEKHD1 PCDHA4 PCDHAC1 PCDHA10 PCDHA9\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "mixed excitatory neuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RPL38 MT-CO2 PEBP1 MT-ND4 CALM2 CADM2 SNAP25 MT-CYB CPE CALM1 STXBP1 MT-CO3 SYT1 SYTL2 RAB3B TBC1D15 WASF1 EIF4A2 RTN4 DSTN MT-CO1 PRNP TMSB10 TUBA1B NGFRAP1 STMN1 BEX1 SERPINI1 TPT1 RP11-111M22.2 SERF2 CPNE8 RPS12 COX6C ENC1 UQCRB TOMM7 NRGN SCD5 GAPDH SYN2 RPL32 NDUFA4 RPL11 TMSB4X RPL13 GAP43 RPL31 NAPB RPL35 OLA1 ATP1B1 GRIN2A MAP1B HIGD1A ZNF385D ARFGAP2 TF OAT BEX5 BAD PDP1 ITM2C YWHAG CSDE1 LYPD6 MAPRE3 MTCH1 SELT TMA7 DYNLT3 UBQLN2 HSP90AB1 TSPAN7 RNF11 ATP5I H2AFZ CBX6 SLC8A2 MRPL47 NELL2 STK39 MSMO1 AP3S1 TBR1 ATP5G3 MED10 CRIP2 UBE2QL1 CYCS AZIN1 RPL26 ARPP19 SUMO3 NDUFS5 ZFAND5 NDUFB1 FAM84A YWHAH BASP1 TSC22D1 NDUFA5 CKB DCTPP1 GDI1 MFGE8 MARCKS COX6B1 CYSTM1 HMGCS1 DNAJB9 PSMD8 RAB7A SIRPA EPS15 ARL6IP1 HOPX C14ORF2 APBB1 HSPA4 SLC12A5 GABARAPL2 NAPA RAB2A FAT3 SYNPO SUSD4 GLRA3 MYEOV2 PPM1A KIF1A PRKACB MT-ND4L PRPS1 PPP3CB PPP3CA DEPDC1B ATP5G1 YJEFN3 SKP1 OPA1 RSL24D1 UCHL1 HSP90AA1 SUMO2 EFR3A ITM2B PGK1 RAB3C ATP2B4 GUCY1A3 PARM1 PPP3R1 GUCY1B3 RASSF3 NDUFA1 SERINC1 PJA2 PEX5L NGEF PHKG1 AP2M1 TPI1 KCNK1 NAP1L5 MORF4L1 DYNLL1 NPTN VSNL1 ALDH5A1 PRKAR1B PHYHIP PSAP MTRNR2L12 CPLX1 ARF5 TMEM155 FTH1 YIPF3 SNRPE IFI6 KIF5A MPPED1 MRFAP1 KCNMB4 DNAJC5 SERP2 SARAF MT-ND1 RPL36A SLC39A10 PREPL TBCA TESPA1 NUAK1 SPARCL1 RAD23B PFN2 THOC7 TUBB4A ANXA6 TXN SLC25A11 CAPZB RPS10 PPP2CA GNAQ MT-ND3 HOMER1 STMN3 ELAVL2 TRHDE VAMP2 RPS28 AGA RPL13A ZDHHC12 FKBP1A VDAC1 SUMO1 GPM6A PRDX5 PRKCB PGM2L1 S100A6 MCHR2 CHN1 WFS1 CDK5R1 ATP2A2 PPARGC1A SLC24A2 RAB6A DNAJC6 ATP2B2 NSDHL RP11-413E6.1 RAB6B HBA2 RPS27A PGAM1 GNB1 ATP5E NDUFA13 RTN1 GABARAP RPL17 ATP6V0C THY1 CFH RP11-20I23.1 RPL17-C18ORF32 MIF GTF2H2C_2 KRT17P6 RPL7 RPL21 CYB5R3 DNAJC21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "mixed excitatory neuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: GPM6A MT-CO1 SYT1 CCK SNAP25 CALM1 RPL26 NDFIP1 ARPP19 UCHL1 MT-ND4 MT-ND2 CKB PSAP MTRNR2L12 HSP90AB1 IPCEF1 PKM SNCB SNCA RGS4 ACTB STXBP1 TSHZ2 TUBA1B RORB ATP6V0B NECAB1 RAB6A ARFGAP2 SLC17A7 PPP2CA MAP1B CSDE1 CLSTN2 FXYD6 MT-ND3 CALM3 ACTR10 MAP2K2 NRGN RTN3 CAMK2D NEGR1 SLC22A17 YWHAG USMG5 DYNLL1 TSPAN7 MTRNR2L8 RTN1 GPX4 MT-CO2 NCDN TBR1 PPIA DNAJA1 RPS15 UBQLN2 CALM2 CHN1 PREPL GABRA1 PHYHIP SCN3B LMO3 NDUFA8 STMN1 ATP1A3 PEX5L HPCA SH3GL2 MT-CYB RPL32 EIF4A2 CADM2 TSPYL1 LMO4 SLC12A5 TSC22D1 RPL35 ARL6IP1 H2AFZ RAB3B SYTL2 ZNF385D NR1I3 TBCB UQCR11 RPS3A DGUOK ANXA6 ELMO1 CPNE8 ZCCHC17 DSTN HPRT1 AP3S1 MDH2 RPL41 RBX1 GNAQ ARL8B BTBD10 TSPYL4 TLE4 GNB1 C16ORF13 UQCR10 ARPC5L PPP3CB SPOCK1 PLCB1 MYL12B FAM131B AP1S1 PPP2R2C SV2B MORF4L2 MAGEH1 LDOC1 ATP6AP2 NOV NCEH1 C9ORF16 NPTX1 PPP3CA LRP1B DPYSL2 EFHD2 RASGEF1B GAPDH C1D EIF4G2 GUCY1B3 ATP5O ATP6V1G1 NEUROD1 ACTG1 C6ORF1 HMP19 RPS6 ENO2 SYNJ1 PEBP1 CCDC85B PPDPF PDE1A MT-ATP6 PARM1 PTMA PPP3R1 PFN1 GOT1 SERPINF1 ITM2B RTN4 STX1B KCNAB1 C2ORF74 GRINA C1ORF95 CLSTN1 AURKAIP1 NREP CTNNB1 NGRN RNF208 SYT13 CCDC169 EGR4 BASP1 CADM3 MTCH1 ATP6V1E1 GPR150 RPL21 CAMK4 YAF2 PRKACB SNRPE SEZ6L SUMO1 CLIP2 COX5B TMEM155 PSMA7 OXR1 PTGES3 GABARAPL2 SLC39A10 SCD5 EDIL3 VDAC1 UBL4A RPL38 CST3 MARCKS PI4KA SEZ6L2 APP SYT5 MTND2P28 DMTN NAT8L PRUNE2 VAMP2 PAK1 PRNP APLP2 RAB1A BCAT1 NELL2 HSP90AA1 REEP5 CDK5R1 COX7C MTATP6P1 RP11-632C17__A.1 CISD1 TMSB4X MZT2B RPL15 MRPS7 KCNAB2 COX6B1 SERPINI1 MT-CO3 PCMT1 PIN1 EPB41L3 TMSB10 NDUFS5 LMBRD2 RPL7 PPP1R7 ACOT7 MAP2K4 TERF2IP NGFRAP1 LANCL1 NDUFC2 CLTC CDC42SE2 UQCRB MAST3 RPL11 FIS1 ITM2A BEX2 TPGS2 SYT11 CFI PACSIN1 TRHDE CABP1 NAPB ATP9A TRIM37 COX6C CLDND1 ALDOA ATP2B2 MPI NDUFB1 LDB2 SYNGR1 PPP2R2B C14ORF132 RAB7A KIF21A SLC25A5 LHFP NWD2 ARF3 TPPP ATP1B1 FBXW11 TPT1 CNIH3 CREG2 BNIP3 HSPA8 CAPZA2 TCEB2 MGST3 MORF4L1 NFE2L1 COX6A1 RPL31 SLC9A6 MAL2 VSNL1 ATP1A1 TOMM7 PSMC1 ATP6V1B2 VWC2L HTR1F JUND PNMA2 PPP2R1A SNRPN YWHAB PTCHD4 RP11-111M22.2 FTH1 CHL1 TOX CXXC4 OXCT1 NARS CLPTM1 SRP14 PIK3R1 PFN2 NGEF SRD5A1 LPPR4 ATP6V0C RP11-20I23.1 RPL3 RPL13A RPL18A TUBB PCDHA10 PCDHAC1 PCDHA9 PCDHA4 DNAJC21 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "mixed excitatory neuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SYTL2 MT-CO1 SNAP25 RTN4 VSNL1 CALM3 CCK RTN3 SPARCL1 TUBA1B NRGN CALM2 GRIN2A AES STXBP1 MT-CO3 TSPAN7 PEBP1 VAMP2 CDK5R1 RTN1 NR1I3 EPB41L3 ATP1B1 RELL2 TMA7 TSC22D1 MT-CO2 CALM1 ENC1 BEX4 ATOX1 PPP3CA COL5A2 NECAB1 USMG5 SYT1 TMSB10 CPE MT-ND4 ST20 MSMO1 CLU MLLT11 SYNGR1 PREPL YWHAZ RPL8 CKB CHRDL1 SERPINI1 COX4I1 CD63 SEPW1 MAP1LC3A PPP3R1 MORF4L1 RPL13 TUBB4A PHYHIP PRKAR1A PIK3R1 TMEM130 ISCU TOMM20 TOLLIP FKBP1A YWHAG RORB SEZ6L2 HNRNPA1P40 TBC1D15 DNAJC21 BEX1 RPL11 GABRA1 NNMT NDRG4 FTL C18ORF32 NPTXR ATP2A2 PACSIN1 GUK1 NDFIP1 GPM6A TERF2IP ATXN10 SLC25A4 SAP18 NGEF RAD23B RAB3A ENO2 ATP5B GLO1 SERINC3 SCN3B SYT11 HOMER1 PKM RPS3A COX6B1 SNCB FAIM2 HMP19 CISD1 PRKCE BLOC1S1 UBA52 APP MIEN1 CPLX2 UBB PNMA1 TKT NAPA STMN3 OR6D1P UBE2N KCNV1 PSMD2 TCEA2 BNIP3 PSMC5 ATP2B4 PPM1A RTBDN OAZ1 TMSB4XP4 B3GNT1 CITED2 UQCRH ARPC5L SNN SKP1 INA DDAH1 LZTS1 PLCB1 RBX1 RPL41 GAP43 PCDH8 VDAC3 TCEB2 RPL17-C18ORF32 CABP1 ARPP19 POLR2I FXYD6 CTNNA2 DCTN1 LMBRD2 PNKP SLC1A2 PPDPF C19ORF10 RPL31 PLD3 MT-ND2 EDF1 ACTG1 HS6ST3 POLR2L TSPYL4 NDUFS5 KIAA1045 RASGRF1 EIF4A2 ETS2 ATP6V1G1 KLHDC3 NREP OXR1 NDUFA11 COX6C ENSA LYNX1 ZNF574 GNB1 PRDM8 PITPNA UBE2D2 C2ORF47 BHLHE40 SLC25A6 GHITM LPPR4 STMN1 REEP5 LMO4 CAMK2G GSK3A CRYM PAK1 LINC01296 RAB2A TUBB4B MYL6B TMEM151A PRKACB PGM2L1 PSAP HPRT1 PCMT1 TMEM59L NDUFC2 FAM127A MT-ND3 BIRC5 IDI1 RP11-111M22.2 PGRMC1 LINC00116 CLIP3 ATP6V1C1 PRNP MOBP CYCS AP2B1 DNER CLTC WSB2 SLC39A10 GDI1 CHN1 BEX5 NHP2L1 RTN4R PITHD1 CADM3 CDK5 MT-CYB KLF10 SLC24A2 MAPK8IP2 PPIA KITLG SPCS2 NSF SLC38A11 NDUFB10 NDUFB5 CDC42SE2 PLS3 HSP90AA1 MAP2K2 CADM2 COX7C SLC9A6 HSP90AB1 OCIAD1 SCN1A ATP1A1 PNMAL1 ITFG1 MT-ND4L ANXA6 PNMA2 KIF1A TXNDC17 TMSB4X MAP2K1 TUBA4A RGS4 BEX2 NACC2 ARF3 AURKAIP1 BASP1 MAL2 RPS15 SLC17A7 ARF5 PRKCB C1QBP PPP2R2C SNRPN NEFL AC244489.1 TUBB3 IDS ALDOA RELN EPHB6 RNASEK-C17ORF49 TUBB ATP6V1G2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "mixed excitatory neuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: TMSB10 CALM2 TMSB4X RPL38 STXBP1 RPS27A TCEB2 PRDX5 RPS6 SNCA MYL6 UQCR11 RTN3 RPL17 OAZ1 NPTN COX4I1 SNAP25 PIN1 NDUFA8 CKB RPL7 COX6A1 NEFL MAGED1 IDI1 COX7C C14ORF2 RPL13A TMA7 PEX5L STMN1 NDUFB3 RPL41 SKAP2 ATP5E ARL6IP1 SYT1 ANAPC11 UCHL1 RPL21 RPL26 ACOX2 RAB3B NDUFS5 RPL32 SERF2 CA10 SYT13 HSPE1 VSNL1 MRPL33 MRPL52 RBX1 PEBP1 LIN7B TOMM7 PJA2 SERINC3 MT1E ENC1 D4S234E SPARCL1 GRIN1 SNAP91 EIF4A2 PI4KA LMBRD2 ELAVL4 EIF1 RPL10A PSMB7 DNAJC21 SCD5 FJX1 GUK1 SNCB BASP1 STMN4 BTNL9 MARCKS RTN1 TXN MTRNR2L12 RPS3A VPS35 DYNLL1 SELM MAP1LC3A PCMT1 PRUNE2 RPL23A ZBBX EXTL2 YWHAZ PRKCB AC244489.1 BSG COX5B GRIN2A NAPB MTRNR2L1 TPI1 SNRPN SRP14 SRP9 FAM86EP GDI1 RPL37A EFR3A LHFP TMEM59L FGF12 TBC1D15 CNTN1 FIS1 MZT2B SLC22A17 BEX4 MBP OCIAD1 ATP5G3 ELMO1 FTH1 BEX1 MTRNR2L8 PCP4 ATP5B PREPL CLPTM1 FAM84A ATP6V1F STUB1 SEPW1 KIFAP3 ATRN PSMA7 NRN1 ARPP19 TPT1 POLR3H RPS4X UBL5 ATP5J2 GAP43 TRAPPC1 RPL8 PFN2 C7ORF50 NDUFA11 HSP90AB1 CABP1 RPL39 LGALS1 NDUFA4 COX6B1 PPP2R1A MT-CO2 CXXC4 TMOD2 CHCHD2 SPTBN1 MRPL51 ACTB FABP3 POLR2I GPM6A CALM3 PRDX2 ACP1 SCN1A RPL31 RORB CALM1 CCDC184 WBP2 MTCH1 THYN1 SYN2 ATP5I DNAJA1 SELT DSTN FAIM2 C9ORF117 NCAM2 PSMB3 RNASEK-C17ORF49 NSF IDS PLEKHD1 HNRNPA1P40\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "mixed excitatory neuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SNAP25 BAI2 RPL23A CKB SCAMP5 RPL26 RPL35 RTN3 ENC1 RPS27A DPYSL2 RAB3B PPP3CA CX3CL1 RPL31 VSNL1 PEA15 UQCR10 SYT1 INPP5F RPL37A NDRG4 PFN2 RAB3A SNAP91 CMPK1 TSC22D1 FTL PINK1 RPL41 HSP90AA1 APLP1 CHN1 FAM163B TOMM7 MORF4L2 KLHDC3 CAMK2G HNRNPA1P40 DNAJC21 ACTR10 WASL FLOT2 ATP5C1 MGST3 OR6D1P RAB11FIP5 RTN4 MAP1LC3A ARF1 VPS35 C11ORF84 TMSB4X SNRPN CLSTN1 PRNP TUBB2A UBE2M NGFRAP1 BEX1 ITM2B ATP9A RFK KCNK1 TBCA PET100 GAP43 KLC1 RAB3IP MT-CYB RRAGA EIF4G2 PIK3R1 MYL6B ATP1B1 DNAJB6 RPL11 GSG1L PCDH8 KCNC3 RPS28 AP2M1 UBC VDAC1 DYNLRB1 MRPL20 PSAP CLTA SLC38A1 RPS5 GPM6A FSCN1 RPS3A FIS1 FAM219A ACTB HPRT1 DPP6 ATP1A1 ATP6V0B ZNF319 PHB RP11-452D12.1 RPS12 NECAB1 CALM3 YWHAB SLC25A6 PRDX3 NEFL RPL17 NFE2L1 PRKCB GDI1 RPL10A ARPP19 HMP19 CRYM RHOB SERF2 RPL32 TMSB4XP4 ARPC4 ARL8A PCDHB18 CDC42SE2 SUSD4 ATP5J CPE MAP1A YWHAQ SNX3 SYT4 RPL18A LL0XNC01-16G2.1 SNCG AP2B1 COX4I1 SCN2B LMO3 HS6ST3 TP53I11 PGK1 NPTX1 NAPB SERINC1 RNF208 C3ORF80 SPOCK1 RPL13A ENO2 WBSCR17 OLFM2 STMN1 ANO3 TMA7 PREPL TMOD2 C4ORF3 TMEM258 PPDPF OCIAD1 CDH13 ATP6AP2 CHMP4B PPA1 RPL36A COX17 STMN3 ATP5G2 FTH1 BEX5 RP11-111M22.2 NPTXR NDFIP1 C12ORF57 ATP2B2 HDDC2 RPS4X BSCL2 RPL13 CFH RP11-20I23.1 ATP6V0C IDS NGRN TF RPL21 AC244489.1 PLEKHD1 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "mixed excitatory neuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 HSP90AA1 MAP1B MT-CO1 MT-ND4 RPL37A VAMP2 PRKCB SLC17A7 SPARCL1 RAB3B MTRNR2L12 SCAMP5 MT3 DPP6 DYNLL1 CFL1 MT-CO2 SPON1 CHN1 ATP1B1 NDRG4 ATP2B2 PSD3 CHMP4B GABRA1 CD99L2 RAB3A KIF21A MTRNR2L1 ITFG1 COX6C PPP3CA YWHAB ATP6AP2 ACOT7 COX17 USMG5 SKP1 SYT13 PEBP1 ATP5B ANXA7 THSD7A C1D LL0XNC01-16G2.1 KCNAB2 TAGLN3 CALM3 NOS1 MAPK1 CDK5R2 SNX3 TXN ATP6AP1 OLFM1 CIAPIN1 ENO2 PGK1 WASF1 MTND1P23 CYC1 SERPINE2 TMSB4X EPHB6 KCNK1 PTPRS NPTN PJA2 EDF1 MT-CYB SOD1 RTN4 KCNA1 TSC22D1 SCN1B CPE CNTN1 PFKP MT-ND2 CALN1 SLC24A2 CALM1 NDUFA12 ZCCHC17 PDE1A NECAB1 CNTNAP5 CAMK4 SCN3B SYN1 ENOPH1 UQCRQ TGOLN2 ATP6V0B ATP5J CLU ATXN10 MMD CLTC PHYHIP PNMA2 TUBB2A PSMD2 CADM3 UQCRH APLP1 SNAP91 NGEF VDAC3 GPR158 YWHAG HOPX REPS2 EPHA6 UQCRB SLC39A10 MPC2 COX7C C14ORF2 SYT1 SULT4A1 NELL2 BEX2 LPPR4 MSMO1 UBE2E3 PGM2L1 RASGRF2 TSPYL1 SV2B COX6B1 MAL2 RPL31 TOMM20 BCAP31 SYN2 YWHAZ PEG10 REEP5 LMO4 PIK3R1 SIRPA ARF1 FKBP1A PLD3 OST4 TSPAN7 DNAJC21 TBC1D15 SERF2 RP11-20I23.1 RPL6 ARL6IP1 RPS10 RPL21 RPL41 ATP6V0C RP11-219A15.1 NDUFA13 BSCL2 RPL36A\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "mixed excitatory neuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: CHN1 TOMM20 MT-CO1 SYTL2 GPM6A PHYHIP ENC1 RTN3 WASF1 SYT1 CALCRL PJA2 GOT1 OPA1 CALM1 SNAP25 YWHAG PIK3R1 MT-ND3 MT-ND4 VSNL1 HMGCR NRGN NGFRAP1 MPC2 ATP6V0B RPL32 PEX5L GPR98 CLTC STMN2 BEX1 NDUFA5 STK39 CREG2 GNG2 ZBTB18 MSMO1 MAPK1 THOC7 PNKP PGAM1 BSN SNCA RPL26 NDFIP2 RPL37A TUBA1B DNAJB9 TSPYL4 PFDN4 SCN3B ARL6IP5 MT-ND2 ARHGAP35 PRNP DCTN1 FKBP1A MED31 GAPDH NELL2 AP3S1 OLFM2 CSDE1 NRCAM FAM219A LZTS1 JUND PPIA PRKCB TMEM35 AP2M1 C12ORF57 CBLN4 MAST3 CCDC25 LDOC1L LMO4 UBL5 NAPA PDE1A CHCHD2 DNAJB6 MAP1B MT-CYB UCHL1 FKBP8 UBB WBSCR17 MTRNR2L1 OCIAD1 EIF4G2 NRSN2 TESPA1 SUB1 CALM2 VAPB SYT3 PRKACB STMN1 MT-ND5 ARL6IP1 NFE2L1 ACTG1 VPS35 RTN4 PRKAR1B TPD52 NDUFS5 TCEB2 ZNF365 DIRAS2 EPS15 RP11-111M22.2 MT-ATP6 KCNMB4 COX7A2 LYNX1 OXR1 MIR6723 RASGRP1 ATP2B2 NDUFA13 SUCLA2 SCN2B RPL7P4 TOMM7 CRIP2 PFN2 MT-CO3 NUDT4 AGA GRINA ANO3 CNR1 DYNLL2 MTPN CFH SERF2 RNASEK-C17ORF49 MTRNR2L6 TMEM191A PCDHA10 PCDHA4 PCDHA9 PCDHAC1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "mixed excitatory neuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MTRNR2L12 MTRNR2L1 MT-CO2 SYT1 MT-ATP6 MT-CO3 MT-ND4 COX7C CPLX2 GABRA1 SYNJ1 GPATCH4 NDUFV1 MT-ND3 NDUFA13 PRKCB RPL37A CALM1 PRKACB MT-ND2 MT-CO1 MTRNR2L6 PNMAL1 FGF12 MTATP6P1 VSNL1 UBE2D2 B3GALT2 NRCAM ATP1A1 GTF3A PDE1A YWHAB CDK5R1 RTN1 MT-CYB RAB3B C14ORF2 MRFAP1 AP3S1 LMO4 PCDHA4 CYFIP2 NECAB1 SUMO3 CKB PGM2L1 KCNC3 AP2M1 VSTM2L UHMK1 PIK3R1 TM2D3 GNAQ PEBP1 ENC1 SLC39A10 ATP6AP2 TMX4 NDUFB5 MFGE8 EPB41L3 PTMA KITLG ATP2B4 KLC2 LMBRD2 LINC01296 KLF10 FBXW11 FAM84A NDUFA5 WBP2 RPS4X SYTL2 ROBO2 CAMK4 HTR4 DIRAS2 ATP9A PCDHAC1 MTRNR2L8 CA11 RTN3 CHN1 C1ORF52 AKAP12 COX6C B3GNT1 RPS26 KCNV1 SLC12A5 SLC17A7 SYNGR1 UQCRH DRAP1 HSP90AB1 MYO10 CALM2 CADM3 OLFM1 MIR3916 RTN4 PNKP ITM2B PI4KA CAMK2G PSD3 BAI2 BSG MAP2K4 ATP6V0C EPHB6 RP11-219A15.1 CFH RP11-20I23.1 AC244489.1 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "mixed excitatory neuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 PRKCB PRNP ATP1B1 MT-CO3 RPL37A RTN3 COX4I1 PFKP YWHAB GPM6A YWHAG MTRNR2L1 EPDR1 VAMP2 RP11-219A15.1 SNAP25 CFH SYNPR HK1 SYT1 TUBA4A SMIM13 SLC7A5 RPS28 PEBP1 ATP5G2 TMA7 CREG2 RPL41 RPL12 FTH1 PRKAR1A NDUFB2 RP11-111M22.2 GRIN1 RTN4 MAP1A GRINA LDHB ACTG1 GTF2H2C_2 PPP2CB CALM1 MT-ND4 ITM2C NCAM2 PKM ATP5B GUCY1B3 SPRYD3 BIRC5 ENC1 SERPINE2 LRRIQ1 MTRNR2L6 GCNT1 PPARGC1A BCKDK CKB SGCD SPTBN1 ARF5 PTPRZ1 SEMA3A RPL31 EIF4A2 RPS15 ATP1A1 NRN1 HCN1 ARSE PSMD12 LMBRD2 ATP9A DRAP1 CNTN1 SERPINI1 OLFM1 SLC12A5 WASL CBLN4 TUBA1B ATP5J NDFIP1 SULT4A1 SEZ6 VPS35 NRGN ZNF365 APLP2 TRIM59 GDI1 MRPS7 SCAMP5 CADM3 TSPYL1 MT-ND1 APLP1 SYNGR3 MFGE8 SLC8A2 NMNAT2 NPM1P30 USMG5 ZNF385D RAB3B SYTL2 SERF2 RPL13A ARFGAP2 GPR98 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "mixed excitatory neuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SYT1 HSP90AA1 TMSB4X SPARCL1 CHN1 TBC1D15 TUBA1B STMN2 CALM1 C19ORF70 MYEOV2 CLSTN1 APLP1 RTN4 CCK CLU NEFL KIF1A GAPDH PKM SERF2 MT-ND3 PRKCB MT-ND1 COX6B1 DGKG GABRA1 STMN1 UQCRH MT-CO1 THY1 SEPW1 RPL35 TM2D3 ARFGAP2 RPS27A PTHLH PRSS3 COX7C TUBB2A FXYD6 VDAC1 RAB3A ATP1A3 ELAVL2 NUAK1 RHOB HINT1 NDUFC2 GUCY1B3 EID1 KIF5A MAP1B ATP5F1 PSMA7 UHMK1 BCL6 RP11-111M22.2 MT-CO2 ATP5E RTN3 OCIAD1 TOMM7 PSMD8 SULT4A1 LINGO1 PITPNA TPI1 NDUFB11 RPL32 SOD1 APLP2 WASL PEX5L DCTN1 ATP6AP1 IGFBP5 UQCRB EIF1 TOMM20 S100A6 SV2B RPL12 ARL6IP1 APP PGAM1 ATP5J SERINC3 UROS CPLX2 C16ORF13 KLHDC3 SYNGR3 SNAP25 SERPINI1 ATP5O OPN3 MTRNR2L8 ARL1 RTN1 NELL2 COX6C FKBP1A DKK3 HOMER1 SYN2 CADM2 DNAJB6 PNMA2 SCG2 SUMO2 ENC1 NECAB1 SLC38A1 KCNAB2 DCTN3 TAGLN3 NHP2 RPS12 NFIA MPC2 RPL8 SNCA ATP1B1 SCN3B NAP1L3 PEBP1 LANCL1 MRPL33 C14ORF2 PEG10 C4ORF3 NDUFB7 RPS4X VAMP2 NCDN GAP43 SERPINF1 SLC22A17 BRK1 PGK1 UCHL1 SRP14 BCAP31 CYCS NAA38 EPS15 GYG1 NDUFA4 CTNND2 RAB6A RELL2 GHITM BCAT1 RPL3 CREG2 ARPC4 RAB6B ITPR2 NDUFAF3 NAPB TMSB10 CHCHD2 PTPN20A UBE2E3 MT-CO3 RPL31 HSPE1 CALM3 TMEM150C RP11-219A15.1 RPL17-C18ORF32 RPL17 SKP1 RPL15 NSF GABARAP RPL18A MTATP6P1 ATP6V0C MT-ATP6 RP11-20I23.1 RPS15 RPL13A TUBB RPS26 RPL21 SYTL2 RAB3B DNAJC21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "mixed excitatory neuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO2 MT-CO3 MT-CO1 MT-ND3 MT-ND4 MT-ND2 MT-CYB SNAP25 MT-ATP6 GPM6A CALM2 MT-ND1 PPP3CA MAP1B MTATP6P1 KLC1 VAMP2 TMEM130 PFKP NAPB YWHAG CABP1 CCK VSNL1 PTPRS ATP5H FAM131B GAP43 ATP6V1A GAPDH CHN1 PREPL PHYHIP YWHAZ WBP2 CADM2 RPL31 DIRAS2 OLFM1 HSPA4 CTNNB1 CALM3 THY1 ATP2A2 VSTM2L SYTL2 CLSTN1 PRKACB HMGCR KRAS MTRNR2L1 RTN4 RAB3B PSMB7 TSPYL1 RTN3 ATP6V1B2 PRKCB SYT1 RPL35 NELL2 COPS8 PRKAR1A PPP2CA PJA2 SYN2 SSTR1 PCSK1 CAPZB NRGN UQCRFS1 SERF2 TUBB2A MDH1 STMN2 NCDN GORASP2 SUMO2 SH3BGRL2 ELAVL4 CDC42SE2 FTH1 HS6ST3 GHITM WBSCR17 HNRNPH2 SUB1 AKAP12 SLC22A17 NFE2L1 HPRT1 ATP1B1 RHBDD2 TSC22D1 PFN2 GNB1 KREMEN2 YWHAH COX6A1 KIFAP3 MTPN SLC2A1 BSN JOSD2 CAMK2G COX14 PSENEN RAPGEF5 C19ORF10 KLC2 FAT3 CTNND2 LDB2 FKBP8 BCAP31 TBCA CYP26B1 ACTG1 CSDE1 ARPC4 COX5A PPIA TPI1 TMEM59L CNR1 NDUFC2 FXYD6 DMTN ENC1 BEX2 MRPL33 LYNX1 PPA1 SSBP3 USMG5 UBE2V2 ACTB ATP1A1 CACNG3 TBR1 KCNA2 RPL23A GDI1 SLC25A4 PRNP SEZ6L2 ANAPC11 BNIP3 ARL6IP1 RAB3A MFSD6 GSK3A ARF3 EFR3A NREP TM2D3 PTK2B RORB TMEM14A DGUOK CREG2 SCOC RPS4X CPLX1 VAV3 TOMM20 SELT MAP1LC3A CBX6 RPS2 KIF21A NGFRAP1 BRK1 SPCS2 PET100 MT-ND5 PDP1 ARL6IP5 NECAB1 RPH3A ITM2B PGAM1 CAMKK2 OAZ1 PSD3 EPDR1 NFIA RTBDN RGS4 CAMK2D ARPP19 NPTN KIF5A PEX5L VDAC1 ITFG1 DYNLL1 PRKAR1B MAGED1 SYNGR1 UQCRC2 PGM2L1 UHMK1 GOT1 RAB11A UCHL1 ANAPC13 RPL10A CPE EPB41L3 C19ORF70 CMPK1 LMBRD2 EDIL3 PRKCG SPARCL1 ALK CRYAB CLU OPA1 SNRPE MAP7D2 SNCA GRIN2A RPL3 RPL13A ALDOA MTRNR2L6 HSPB1 HNRNPA1P40 PLEKHD1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "mixed excitatory neuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SNAP25 MT-CO1 ATP1B1 RTN3 SYT1 CHN1 CCK PPP3CA RTN1 MT-CO2 VSNL1 SLC12A5 RTN4 CLSTN1 RPS28 CALM2 BASP1 NECAB1 CLU SYT4 PRKCB PSAP MT-CO3 DYNLL1 TUBA1B SV2B PRNP ENC1 PKM MT-ATP6 ARPP19 MTRNR2L12 SLC24A2 NDRG4 YWHAG STMN1 NGFRAP1 ACTB APP ATP6V0B TBC1D15 KIF1A TOMM20 RNF11 STMN3 ATP2A2 GRIN2A ATP6AP2 ATP6V0E2 FAIM2 CAMKK2 YWHAH FTH1 DIRAS2 TSPAN7 PTPRS PIK3R1 DKK3 GPM6A WASF1 STXBP1 RPL15 PDP1 ENO2 SNRPN SPARCL1 CALM1 RPL41 NDUFV1 RPL13 MTRNR2L8 ITM2B NRGN SEPW1 DPYSL2 OCIAD1 ARL6IP1 MT-CYB RAB3B SYTL2 CHL1 HMGCR ATP5I SLC25A11 NPTX1 VAMP2 ACTR6 MTRNR2L1 MAST3 DNAJA1 ATP6V1B2 PPP1CB KIF21A BAD CKB APLP1 NCALD CISD1 TLN2 KIF5A LMO4 NUAK1 CTNNA2 IGSF21 MDH1 SLC8A2 OPN3 HSP90AB1 PLD3 MT-ND3 GABRA1 ZNF365 TOLLIP ITFG1 NDFIP1 SARAF MT-ND1 RPL18A BEX1 PELI3 RP11-111M22.2 ATP9A CFL1 STMN4 YWHAB COX7A1 C1ORF52 HIGD1A BSN COX6A1 COX6B1 SYNPO GDI1 CRIM1 DYNC1I1 SLC22A17 PFN2 PGRMC1 RPL26 HOPX MT-ND4 SERPINI1 OLFM1 CHGB BEX5 NELL2 RAP2A SELT TMSB10 ASAP1 HSP90AA1 LMO3 CD59 KIF3C PHYHIP PRKAR1A YWHAZ PRKACB EPHB6 HSPA8 NEGR1 MARCKS TMSB4X EGFL7 NFIA TCEB2 MT-ND2 ATP2B2 OPCML SLC39A10 SYNGR1 PSENEN SYT11 RP11-20I23.1 ATP6V0C SCOC RELB PTPRN2 TENM3 EIF1AX RPL35 ABRACL DYNLRB1 TSC22D4 ATP6V1A PNMAL2 MAGEH1 KCNAB2 NUDT21 APBB1 SERPINF1 CD99L2 QDPR THY1 REEP2 FXYD6 PVRL1 EFR3A CABP1 B3GNT1 BAG4 CBLN4 MSMO1 BRK1 NAPA CDK5R1 RAB11FIP5 POMP LAGE3 FAM86EP RGS4 PINK1 CPLX1 TSC22D1 DNAJB9 UBL5 SEZ6L2 PRUNE2 INPP5F IDH3A NFE2L1 ID2 SSBP3 BEX4 BTBD1 FABP5 FAM127A TMOD2 SNCA KLF10 VGF PPP2R2B PTPRN POLR2I ANAPC13 SKP1 C11ORF31 NAPB HPRT1 AP1S2 VDAC3 SMIM13 ZFAND5 OAZ1 PGAM1 EHD3 RPL23A HS3ST5 NREP DYNLT3 SH3RF1 SCN2B TBR1 PGK1 NSF SYT13 CCDC85B STX1B MRPL20 BEX2 MYL6B CLSTN2 BAALC SYNGR3 UQCRB NPTN TMEM14A PCDH17 TMX4 FIS1 TRIM37 MAP1B RABAC1 MORF4L1 CAP2 SUMO2 SNX10 ACTR1A CNTN1 MPC2 PRDX2 CTNNB1 PRDX1 UBE2QL1 ARF5 LINGO1 DDAH1 ALDOC FBXO2 CYFIP2 CD24 YIPF3 BSCL2 SPOCK1 NDUFB10 SEMA5A BANF1 PFKP ETFB TM2D3 BAI2 ATP1A1 HS6ST3 ARL2BP NCDN MTATP6P1 PNMAL1 SCN3B PI4KA SPTBN1 BEND5 REEP5 FAM163B ERH RHBDD2 SCN1B PRKAR1B PSMC3 BCAP31 ARL8B C20ORF24 MT3 RPL7 ETS2 GHITM C4ORF3 CADM2 ARHGDIG CAMK2G RASGRF1 HOMER1 RAB3A ATP6V1E1 HS3ST2 MTPN KLHDC3 COX6C FXYD7 EIF1B SLC17A7 TXN RAB1A RXFP1 ESYT1 LDB2 DUSP6 RFK ATP5F1 CCDC184 LIMK1 ARL6IP5 CNR1 ATP5B RAB11A ADAM23 HN1 UBE2M DHCR24 ANXA6 MYL6 CDK14 KIFAP3 SERINC3 AK5 GPX4 ATP6V0D1 CRIP2 IGFBP2 BSG RAB6B LYSMD2 ACTG1 UBB SRP9 FGF12 ARF3 TMEM151A KLC1 SLC10A4 APLP2 SLC6A17 LAMTOR5 TSPYL1 GNB1 CA10 RPL32 MAP2K2 SYN2 CTSD LPPR4 AP1S1 ATP1A3 EEF1A2 UQCRQ EIF4A2 VEGFA PCSK1N USP5 CAPZB ANXA4 CADPS2 PRKCE EPDR1 PGM2L1 CERS6 GABARAPL2 GRINA PNMA1 RPL8 MRPS7 AP2M1 HINT1 BIRC5 ATRN TPI1 CALM3 PPP3CB PRELID1 SYT5 PTK2B MAP2K1 LMBRD2 UBA1 CHST8 PPDPF KCTD12 SNRNP25 OLA1 NPTXR NDUFA13 USMG5 MRPL55 FTL NDUFA1 NGEF TMEM59L ATP6V1G2 MIF RNASEK-C17ORF49 IDS CFH CYB5R3 RPL17 RPL17-C18ORF32 RP11-219A15.1 RPL36A TUBB PCDHGA10 PCDHGA6 PCDHGA5\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "mixed excitatory neuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SYT1 TMSB10 SNAP25 MAP1B CALM2 CHN1 STMN1 RTN3 CADM2 VSNL1 MT-CO3 MT-CO2 STMN2 ACTB TUBA1B PRNP MT-ND4 MT-CO1 CALM1 RTN1 FTH1 CHL1 CLSTN1 TMSB4X GPM6A TSPYL1 NRGN RPL41 TCEAL7 SLC1A2 PRKACB GAPDH PCP4 PRKCB ATP9A SKP1 SUMO2 YWHAZ C14ORF2 DSTN PSD3 PIK3R1 TSC22D1 ARL6IP1 DKK3 KCNV1 CAB39 NEFL DPYSL2 RTN4 FAM3C SYN2 ENO2 TUBB2A RPS15 HPCA RAB3C YWHAB ENC1 RPL35 PGAM1 SLC39A10 PTMA RPL38 BSG REEP5 ATP6V1A PFN2 COX6A1 SPARCL1 FXYD6 ATP6V0E2 THY1 PREPL COX7C SNCA GDI1 CBX6 RAB3A HSP90AA1 HMGCS1 SLC22A17 RGS4 MORF4L1 GABARAPL1 TM2D3 SEPW1 RPL23A TMOD2 GNAQ EIF4G2 SNX10 PRDX2 NDUFA4 GNG3 NRCAM MAP1A VAMP2 OLFM1 DIRAS2 PPP3CA SYT11 YWHAG SOD1 DCLK1 SLC17A7 RPL31 MT-ND2 CAMK2D MT-ATP6 RAB6A TSPAN7 ARF3 ITFG1 GAP43 SYTL2 TBC1D15 TMEM14A UBB CABP1 SEZ6L2 ARL6IP5 APLP1 GRINA HSP90AB1 ACTG1 ACTR6 ATP5I GPX4 MT-ND5 ATP2A2 DPY30 TRABD2A SYNGR1 PSAP SSBP3 KCNC2 GOT1 PTPRT PPP1CB ATP5J UBL5 PPP2R2C SRP14 ATP1B1 SLC24A2 PRUNE2 MT-ND4L AK5 ATP5B NREP FTL SCOC KLC2 PNMA2 HTR2A PRKCE NAP1L3 CPE NGRN PPP3CB SERF2 NAPB WASF1 HSPA8 ATP6V0C C20ORF24 NDUFB10 RPL15 SARAF GRIN2A PDE1A LIMK1 ATXN10 APP SCD5 RPL7 NPTXR FKBP1A SYNGR3 HINT1 MT-CYB TMEM65 ADD2 GRM3 MGST3 PDP1 STXBP1 FBXL16 LYNX1 RAB6B STMN3 RBX1 EIF4A2 PGM2L1 SYT4 RORB CX3CL1 MBP TCEB2 CDK14 COX4I1 RPL39 PEBP1 TRHDE PHYHIPL MT-ND3 BEX4 RP11-219A15.1 CLIP3 MTRNR2L1 CFL1 RP11-20I23.1 AZIN1 MDH1 ATP2B2 PKM CLSTN2 OCIAD1 MT-ND1 TMA7 BASP1 DYNLL1 MAPRE2 SNAP91 KLC1 PJA2 TUBA1A AURKAIP1 MAP4 CERS6 MZT2B EIF1AX RLIM MIF CDK5R2 PTPRS PRKCG NECAB1 RAP1GAP2 SLC9A1 COMMD6 MTRNR2L12 OPN3 FSCN1 TRIM37 COL12A1 MAST3 TPI1 REEP2 ZMAT2 TUBB4B UBL4A GDF10 DYNLRB1 FAT3 UROD GDE1 SMAP2 ELAVL4 ZFAND5 FAM189A2 CALM3 SDHAF1 RPS5 RAB27B CLU NAP1L2 CDKN2AIPNL RPS3A ATP6V1C1 ATP6V0B DGUOK JUND DLC1 BAALC NAT8L TENM3 NRN1 ITM2B RAB11A ARPP19 SYT13 KLHDC3 CPLX1 SNAPC5 RPS28 FAM19A2 TERF2IP PET100 MAPK1 CACNG3 RPL3 ITM2A CDS1 PFKP MAP1LC3A SLIT1 BCAP31 MT3 OXR1 PSMA7 TCEB1 EHD3 SH3GL2 LANCL1 GPR158 PARM1 ATP6V0D1 RP11-111M22.2 H2AFZ INPP5F CDK5R1 MAP1LC3B SNRPE CAMK2G CCDC115 ID2 GABRA1 FAIM2 FAM131B PRKAR1B TMEM59L DNAJC5 CHGB MKX EGFL7 SIRPA TRAPPC1 ADSS TBC1D7 GLIPR1 VAV1 ARL8A C6ORF1 SERINC1 LINC00116 FAM219A CRKL COX6C STX1A TESPA1 NAP1L5 UQCR11 TP53I11 SCN2B PINK1 PEF1 PSMC1 PAK1 PDE1C FKBP8 SDCBP TCEAL5 STRAP SH3BGRL3 CISD1 ADAM23 ASNA1 ATP6V1G1 PROKR2 MTPN OPCML TMEM70 RPL37A HDDC2 FSTL5 FAM163B BSN CDC42SE2 ALDOA IPCEF1 SERPINI1 PSMD8 BAG4 RHEB LGALS1 RPH3A TTN KIF21A NEFM ATP1A1 ACP1 PHYHIP NSF UQCRH IDI1 CD59 MORF4L2 MAL2 SH3BGRL2 ANO3 ARHGAP35 CLTC HBA2 C18ORF21 NDFIP1 PSMD2 RHOB COX14 CACNB1 DIRAS1 BCAT1 PCSK1 RANBP1 NDUFA1 PRDX3 TPPP NDUFB7 SV2B NCBP2-AS2 UBC ARF5 RSL24D1 DDAH1 SERP2 BSCL2 ATP6AP2 PIN1 PPP2CA CXXC4 OAZ1 RNF208 RHBDD2 TMEM151A SNX3 RAB2A DNAJB9 CEND1 PAFAH1B2 AP2M1 VDAC1 C3ORF80 PLCB1 UBE2M RNF11 LMO3 APLP2 TOMM7 PEPD YWHAH NDUFB5 MMP24-AS1 KCNK1 NDUFC2 RPL6 ATP6V1E1 DPP6 RXFP1 ETV1 SLC30A3 YWHAQ ATP2B4 SUB1 EPHB1 SUCLA2 LRMP FAM134A MAP2K4 C2ORF74 RPL10A SAP18 NDRG4 OAT PRDM8 NHP2 NDUFC1 B3GALT2 ATP6V1F NDUFV1 ELAVL2 SLC25A11 ARL8B SLC9A6 EIF1 UCHL1 RPL26 PLD3 MTRNR2L8 GLO1 PNMAL2 CD101 B3GNT1 PMEPA1 NDUFS5 FARSA CDC37 MARCKS NEUROD6 CHP1 CORO2B TOMM20 RPS2 MTRNR2L6 GMFB AP1S1 MTATP6P1 CCDC124 TMTC4 NDUFA5 GSK3A TSPYL4 GPR88 PEA15 SPOCK1 BEX2 KCNAB2 CAMKK2 CDH7 MAOB RAB4A UBE2V2 LDB2 SLC8A2 FAM174A SERPINF1 TIMP2 KCNMB4 PACSIN1 MRPL52 GABARAP DCTN3 WBP2 ATRN WBSCR17 RPL13A SNRPN SEZ6L MFN2 COX7A2 GNB1 RAP2A HCN1 GLRA3 CNTN1 SLC25A22 POLR2K RPL36A TUBB3 C11ORF31 APOLD1 ATP6V1G2 RPL21 PLEKHD1 HNRNPA1P40 TUBB PCDHAC1 PCDHA10 PCDHA9 PCDHA4 PCDHGA5 PCDHGA6 PCDHGA10\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "mixed excitatory neuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-CO3 MT-ND4 MT-CO2 MT-CYB MT-ND2 GPM6A MT-ND3 PREPL MT-ND1 SYT1 SV2B PRNP ZBTB18 MT-ND5 CYB5R3 PLCB1 GAPDH PPP3CA MT-ATP6 PHYHIP PTGES3 NRCAM RTN1 MAP1B ROBO2 MTRNR2L1 ENC1 NDRG4 HPCA ATP1B1 BAG4 YWHAG ESCO2 IMMP1L PRKACB NDUFA13 DIRAS2 KLC1 YJEFN3 ARPP19 SNAP25 FAIM2 MTRNR2L12 SARAF PCMT1 YWHAQ ARL6IP1 LDB2 SYT4 SKP1 STMN1 MARCKS GDI1 NFE2L1 IDS RPS15 SLC24A2 RAB6B PJA2 SERPINI1 SLC39A10 MAPK1 MTRNR2L6 SYTL2 KIF5A HSPA4 PCDH19 ARC CKB HINT1 PPM1A DYNLL1 LDHB DNAJB6 NAP1L3 KCNK1 PACSIN1 RPL37A SNCA TMEM59L AES CLU RPS4X COX5B BEX4 ARL2BP CA11 PTMA TCEAL7 RAP1GAP2 CCDC85B TMSB10 MFSD6 OAT GLRA3 ATP6V1E1 MAP4 STXBP1 MTX3 WBSCR17 SUB1 SYN2 MAPK8IP2 SSTR1 SPARCL1 SERPINE2 CDS1 HK1 CLTC ATP1A1 HMP19 UBA52 MORF4L2 SNCB MAP1A FKBP1A SCN2B ZFP36L2 TOMM7 GHITM BAI2 SYN1 CORO2B SLC7A5 RP11-20I23.1 APEH RP11-111M22.2 NUAK1 FASN NDUFB7 ZFAND5 UTRN C1ORF233 MTPN MAP1LC3A TPPP SLC25A6 VWF HSP90AB1 TAGLN3 CLDND1 ARL4C RTN3 RPL18A NRGN BTBD1 VSTM2L NAA38 CHN1 HPRT1 CABP1 VSNL1 ANXA6 ADAM23 ATP6V0E2 WDR47 STMN3 EIF4A2 TOMM20 CTNNB1 SLC22A17 CCK PPDPF EIF1AX ELMO1 RPL41 TCEB1 CNTN1 TMOD2 PCDHA10 DYNLL2 NMNAT2 EGF YWHAZ NECAB1 INPP5F ZBTB20 PKM ATP2B4 UQCRB UQCRH TUBB4B FXYD6 ATP6V1F NAP1L2 NBL1 SERINC3 WI2-1896O14.1 AZIN1 MRPS21 UROS SCD5 NFIA COX7A2 VEGFA KCNMB4 CLEC2L IPCEF1 TRIM37 PRRX1 WASF1 ETV5 LGALS1 UCHL1 TMEM132D HCN1 NDUFA1 WBP2 ATP6V0C ADSS PEX5L BEX1 YWHAH SYT11 COX7A2L UBL5 CALM3 CADM2 RPS28 FTL VCAN KIF21A DCTN1 NELL2 BSN PLD3 CDK5R1 PEBP1 ITFG1 TSPYL1 PCSK1N TM6SF1 SLC1A2 RAB6A RPL31 NCEH1 LRP1B RLIM LMO3 RPL36A PEA15 GADD45B NSF RPS10 NGRN RPL21 PVALB RP11-219A15.1 AC244489.1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "mixed excitatory neuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RPS28 RPL21 SNAP25 TMSB4X CALM2 MT-ND2 PRNP TUBA4A MT-CO3 GAPDH RPL26 ZNF385D TSPAN7 RPL32 ATP1B1 PNMA2 RP11-111M22.2 CHN1 GRIN2A RGS4 VSTM2A KRAS ID2 MT-CO2 PTMA OLFM1 RPL38 VSNL1 PPP3R1 NRGN CHL1 BRK1 APBB1 MT-CYB COX6B1 SELM KLHDC3 RPL41 MAPK1 RPL31 SRP9 PSAP TBC1D15 NCDN HOMER1 GOT2 SNX3 GHITM ADD2 NRCAM MFSD6 BEX2 ARPP19 PFN2 PJA2 STMN2 PGD CALM3 COX6A1 ZNF547 RPS10 MLF2 RPS12 NCALD RTN1 RPL3 HINT1 MDH2 SMAP2 TIMP2 UBE2N TSPYL4 PSD3 AP2M1 ITM2B NARS SMS NFIA CMAS RTN4 TMOD2 SULT4A1 PPP3CA CST3 ACTG1 DYNLL1 DLD C12ORF57 UBE2L6 CADM2 VEGFA MT-ND1 OXCT1 SEC61G ZNF208 ARL6IP1 CDK5R1 RPL37A ATP6V0B CAMKK2 NDRG4 EIF4G2 VPS35 GDA DNAJB9 PSMB5 PSMA7 CLDND1 BAG4 PLCB1 PLD3 CLTC RAB3C MGST3 PSMB7 TMEM191A NHP2 RNASEK-C17ORF49 SNX22 FKBP1B ADAM23 ANXA4 MAGED2 CYCS YWHAG ARL8B TMEM59L YWHAB MYEOV2 ACTB TESPA1 ELAVL4 PDCD5 MT-CO1 HSP90AB1 TM2D3 FTL BEX1 NREP PPP2R2C GNG3 NPTXR NDUFC1 NRF1 TSC22D1 MAGEH1 FXYD7 RAB2A SYT1 ABRACL CTXN3 ATP6V1C1 PPP2CA RPL13 NAPB COX7C SLC24A2 ARF5 PEBP1 VSTM2L GABRA1 TCEAL7 UBC RPL11 MYOM2 SKP1 PDGFD GTF3A CPE RPL17 CRIP2 SLC1A2 NECAB1 NDUFA12 OAZ1 MTCH1 SNRPN RPL7 ATP6V1E1 IDS PCDHGA5 PCDHGA10 PCDHGA6\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "mixed excitatory neuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: STMN1 CALM1 SYT1 RPL31 PKM RPL38 ATP1A1 JUND VAMP2 HSP90AA1 ZFAND5 NGFRAP1 PPP3CA VSNL1 MT-CO1 RPL36A RPL13A FAM198B UBB ARPP19 OLFM1 PEBP1 SNAP25 OAZ1 CALM3 RPL23A CCK SPARCL1 NDUFS5 PFN2 RPL39 RPL13 ACTB RPL26 DYNLRB1 TMSB4X PLCXD3 MT-CO3 CFL1 PREPL RTN1 SYTL2 RAB3B NDFIP1 MT3 NDRG4 HOPX ACTG1 OAT DCC CTSD PRKAR1B UBL5 RPL7 TERF2IP KCNMB4 NHP2L1 SPCS2 GABRG1 VSTM2L CA11 PPP1CB SAP18 MPPED1 SERPINI1 PPIA SNX3 SKP1 TSPAN7 MT-ND4L POLR2J SUCLA2 GHITM APP MORF4L1 SYT4 GOT1 FAIM2 TCEAL2 CALM2 NDUFB2 MRPS21 SNRPN ATP5G2 UQCRB DNAJB6 AZIN1 C19ORF43 SNCB RPS28 POLR2K RXFP1 ATP6V1F STXBP1 CISD1 TUBA4A GABARAPL1 MGST3 MT-ND4 RPL41 CADM2 RAPGEF5 DUSP6 ELAVL4 RTN4 PRDX2 UCHL1 FTL TUBB2A PRKAR1A PRNP MAL2 MT-CO2 C14ORF2 RPS6 ZNF365 PHLDB2 APLP1 TCEA2 PSMD2 ARL6IP1 SNX10 PIK3R1 LINC00087 IMMP1L INA ELAVL2 COPE KIF5A TUBA1B TMSB10 DYNLT3 EXTL2 ISCA1 UBC MT-ND2 GPM6A RHBDD2 OPCML RP11-111M22.2 DMTN HMP19 BRK1 PHB HMGCR CTNNA2 RPL37A NDUFB1 RPL17 SMIM12 SLC9A6 GABRA5 CREG2 ATP6V1A GUK1 KCNV1 RAP1GDS1 ADAM23 PGAM1 POMP HDDC2 RPL32 NDUFA2 RAB3A MDH1 CADM3 STMN2 RAB1A KCNF1 PJA2 ATP5C1 PNMA2 NEGR1 HSP90AB1 MYL6B SLC6A1 SYN2 UBQLN2 TSHZ2 YWHAQ DYNLL2 UQCRH PFKP SLC30A3 DPYSL2 NDUFV1 MTRNR2L12 PRELID1 CNTN1 RPL18A DNAJC21 ARF5 NUDT4 TBC1D15 ATP6V1G2 GTF2H2C_2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "mixed excitatory neuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SNAP25 NPTN PRNP OR6D1P SPARCL1 SERF2 CCK SMIM13 UBB SULT4A1 CDK5R2 RP11-111M22.2 SCN3B ENC1 ASAP1 ZNF385D HSP90AB1 PHPT1 ZFAND5 DRAP1 ARL6IP5 NGFRAP1 BIRC5 IGFBP5 PPP2R2C ATP9A PVRL1 MAGEH1 GPR158 SYT3 RAB6B NCDN COX7C MTRNR2L12 STX1B CHN1 RPL13 TERF2IP UCHL1 MAP1B ATP5I APLP1 PNMAL2 CDKN2AIPNL ATP2B4 CALM2 GALNT14 SPON2 KLHL5 SLC17A7 ATP5J NR1I3 NAT8L CNIH3 C19ORF53 GLO1 COX6C NRCAM LINC00116 GNAQ RPL38 NPTXR SMS CHP1 TUBB2A VDAC3 C16ORF13 PI4KA REPS2 ACTG1 MPPED1 ISCU NECAB1 TLN2 GNG3 PPM1A SYT4 ARHGDIA CLSTN2 CREG2 ATP5J2 SPDL1 TPT1 AP1S2 MFSD6 MAP2K2 ITFG1 MZT2B NRSN2 RTN1 NDUFB4 OAZ1 GOT1 CA11 RGS4 SEPW1 BAI2 MTCH1 CTNNA2 GABRA1 NDUFA1 PPP3CA C11ORF31 RTN3 HSPA8 EGR1 LMBRD2 CORO2B ATP1B1 OAT C7ORF50 DUSP6 AP2B1 SLC6A1 BSN TF RAB3B SYTL2 MT-CO1 MIR6723 NUDT4 RP11-219A15.1 DNAJC21 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "mixed excitatory neuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 SNAP25 MT-ND3 PPP3CA MT-CO3 ATP1B1 MT-CYB MT-ND1 MTRNR2L1 MT-ND4 MTRNR2L12 MT-CO2 PTMA CHN1 MT-ND2 MT-ATP6 MAP1B RTN3 CALM2 ACTB YWHAG RTN4 CALM1 CKB ANO3 HSP90AA1 CLU MAPK1 MT-ND4L MTRNR2L8 NRGN ENC1 CAP2 GABRA1 SLC12A5 SNRPN GPM6A ITM2B UCHL1 YWHAZ TSPYL4 PIK3R1 HMP19 VAMP2 PRNP SV2B MTATP6P1 MTRNR2L6 INPP5F MCHR2 NPTXR NFE2L1 CLSTN1 THY1 IPCEF1 BSG PNMA2 CAMK2G CHGB SPARCL1 SYT4 MORF4L1 RGS4 THSD7A ZBTB18 TSPYL1 CAPZA2 NDFIP1 CEND1 ZNF385D NDRG4 ENO1 DCLK1 WASF1 MAP2K1 VSNL1 ATP6V1G2 SCOC MT-ND5 ITFG1 IGFBP5 STMN2 TCEAL5 CREG2 TMSB4X PHYHIP RPH3A NAT8L NEFL TAGLN3 GUCY1B3 ZFAND5 NSF IDS RP11-20I23.1 ATP6V0C SFRP1 ARL4C C1QL2 RAB6A PGK1 PPP2R2B TIMP2 HPRT1 PPP2CB GDI1 SLC22A17 MPPED1 SLC24A3 DYNLL1 TUBB2A NEGR1 HS6ST3 PRKCG TMEM35 BEX4 RPL37A ENSA CFL1 PGAM1 NELL2 CAMKK2 UBE2E3 SYNGR1 APBB1 RPL35 RHBDD2 HMGCR UQCR11 NDFIP2 NUAK1 CMAS ATP5B TGOLN2 MAPRE2 NBL1 LYSMD2 SYNPR HIGD1A ARL2BP MDH1 RAB1A PCBP1 LMO3 UBA1 PLCB1 NGFRAP1 SLIT1 GAPDH PSAP MAP1LC3B CRIM1 UBE2V2 NCAM2 ATP6V1B2 TSC22D1 CLTA CDK5R1 MTPN ATP5I ACTG1 RAP2C TUBB STXBP6 STMN1 TRIM37 PEA15 TDRD5 GFAP POU3F1 GNB1 UBE2N TOMM34 DKK3 EIF4A2 LINC00116 BHLHE40 EIF1 TBR1 CDK14 GRIN2A STK39 GSK3A BSN NUTF2 CCDC124 MAFB NPTN REEP5 CADM3 GABARAPL1 NDUFB8 KCNAB2 BAG4 YWHAH CHMP5 BNIP3 PPM1A BCAP31 ARF1 ATP9A MED31 OPA1 ARHGDIG ATP1A3 RAB6B NDUFA4 EIF1B HDLBP ARFGAP2 TAC3 TUBA1B RAB3C PROX1 SLITRK1 TRIM47 SDCBP SLC17A7 CD99L2 LINC00086 APLP1 CDC42SE2 PFN2 ASAP1 HNRNPH2 GAD1 KLC1 NEFH TPPP SLC39A10 FAIM2 ENO2 PRKCB ASNA1 PLD3 VSTM2L NRCAM MAPRE3 RTN1 CERS6 COX4I1 ARHGAP35 AP1S1 SLC8A2 BRK1 SUMO3 KCNF1 RPL18A TAC1 EID1 FKBP1B RELN ANGPTL4 SUB1 RAB2A TBCB COL9A1 CX3CL1 SNX10 TMSB10 RNF11 NFIA PKM RPL31 CCDC184 SPON2 CTSD GNG3 WBSCR17 GAP43 PAM PDP1 CDH13 CLIP3 EPHB6 ATP2A2 SARAF ATP2B2 KCNAB1 DYNLL2 NRSN2 PPP3CB CALM3 GABARAPL2 BAD CNTN1 TMEM155 TMTC4 CALN1 TPRG1L CAPNS1 LINGO1 GRIN1 DNAJC6 NAP1L3 PRKACB LPPR4 LMO4 SERINC1 BEX1 KIF21A COPRS RAMP1 GNAQ SCG2 YWHAQ TMEM59L SKP1 NCEH1 VPS35 ATP1A1 SNCA MTCH1 SPRYD3 MAP7D2 NAPB FAM127A KRAS ADORA1 COX7B BSCL2 ALDOA NUDT4 NGRN\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "mixed excitatory neuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RPL35 RPS27A SNAP25 RAB3B RPL13A ENO2 CABP1 RPL26 GDA RPL31 SERPINI1 NGFRAP1 NPTN NDUFB5 RP11-111M22.2 RPL41 INPP5F RTN4 SERPINE2 DPYSL2 PEBP1 RPL13 RPL23A GABRA1 RPL37A ATP1B1 TPD52 YWHAZ TMA7 KCNK1 AP2B1 DNAJC6 RPS2 TUBA4A STX1B DSTN DNM3 CDK5R2 RPL12 RAB11A MED10 TMEM14A PTPRN2 C19ORF70 RPS15 RPL36A RPL21 GUCY1B3 PRKCB ITFG1 PJA2 BAALC COX7A2 THY1 WASF1 TSPYL1 PSD3 PDCD5 AES OLFM1 OR6D1P SRP9 BASP1 PGM2L1 ATP4A APBB1 ARF3 DYNLL1 SLC22A17 BAI2 OXR1 DHCR24 CDK14 RPS28 OR2X1P RPL32 PPDPF TCEAL2 PTPRS OCIAD1 DMTN EDIL3 CRIM1 SARAF ALCAM TRIM37 FNDC4 STXBP1 PNMA1 CNTN1 PTK2B SOSTDC1 RTN3 LGI3 MZT2B NDRG4 GPR26 OAT YWHAG WBSCR17 SYT1 NRF1 TUBA1A SYNGR1 TESPA1 OPCML CLSTN1 PTGES3 TSPYL4 PTPRN NDUFB10 EIF4A2 STX1A CHN1 RPL10A GPM6A CEND1 YJEFN3 CRIP2 ATG9B YWHAB GUK1 RAB40B PTMA BSN UROD NCALD OAZ1 TCEA2 NDUFB11 ACTB PPP3CA SLC12A5 SLC25A22 UBA52 SV2B DNAJC4 KLC2 SPATA13 TSPAN7 SLC30A3 RP11-20I23.1 ALDOA RPL17-C18ORF32 SERPINF1 RPL17 ATP6V0C AC244489.1 PCDHGA5 PCDHGA6 PCDHGA10\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "mixed excitatory neuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SNAP25 MT-CO3 CHN1 CALM1 MT-ND4 STMN2 PREPL MT-CYB ATP1B1 RGS4 MT-CO1 SYT1 RAB3B PPIA MT-CO2 CHL1 ACTG1 MAP1B KLC1 TMSB4X ELMO1 TUBA1B RTN1 RNF11 NDFIP1 VSNL1 TGOLN2 CLU LINGO1 PIK3R1 CREG2 JUND OAZ1 NRGN NECAB1 BASP1 ARF5 PSAP CAP2 TESPA1 SNCA MTRNR2L1 MT-ND3 OLFM1 DNAJB6 CALM2 HSP90AA1 CNTN1 FTH1 LMO3 TCEB1 CDK17 CAPZA2 MT-ND1 EIF4A2 CADM2 KCNAB2 PPP3R1 KIF5A TUBB2A SEPW1 ARL6IP1 TAGLN3 SYTL2 TBC1D15 ZNF385D VAMP2 ENO1 IPCEF1 MFSD6 RORB WSB2 UCHL1 ATOX1 MT-ATP6 PNMA2 RPL13 ZBTB18 TXN MT-ND2 C7ORF50 UQCR10 GDI1 PRDX3 TMEM59L ACLY KIAA1045 STXBP1 ATP5B PRELID1 CCK DYNC1I1 SEZ6L RNF208 TPT1 PLCB1 COL5A3 RHEB FAM43B EPB41L3 SH3GL2 STMN3 PPDPF ATP1A1 PGM2L1 SLC30A3 SSTR1 SLC12A5 GSTO1 CDK5R1 WBP2 SCOC DHCR24 APLP2 PCYT2 NUAK1 POLR2K CLTB UBE2V2 RELB TMEM70 SNX10 SERINC1 ENOPH1 P2RX6P BAG4 LDB2 SLC25A11 SDCBP MRPL20 ATP6V1B2 BSG GPM6A CAMKK2 TMEM65 SNCB ACTB RHBDD2 SLC22A17 PTMA TMEM164 DPP6 RPL36A ABHD8 UBE2QL1 TSPYL4 KCNA1 CXCL14 COL4A3 RAP1GDS1 CKB RIT2 CDC37 NPTX1 ALDOC THY1 GHITM ONECUT2 PHYHIP GPX4 PRKAR1A GNAQ PPP2R2C YWHAG MGST3 KIF21A MTRNR2L6 REPS2 MAST3 TMEM150C LDOC1L OPCML TUBA1A EDIL3 GAP43 ARF1 FTL MT3 ITM2C BNIP3 NAPB WASF1 RPL35 RPL38 BHLHE40 NHP2L1 COL6A1 PPP3CA RAB1A PEX5L SLC17A7 SCN1B D4S234E MPPED1 ITM2B APP CLIP2 NAA38 DYNLL1 SNRPN UBC RP11-195F19.5 SUMO2 PGAM1 SERPINI1 MT-ND4L LMBR1 PPP3CB ATP9A ID2 PITHD1 ATP5I DPYSL2 TMEM132D LAMA2 PRNP ATP5G1 DKK3 MAP4 CNRIP1 EIF4G2 RPL41 SEZ6L2 TPD52 FAT3 CALM3 RPH3A ATP2A2 REEP2 YWHAH LIMK1 GPX3 RPL18A YWHAB SRD5A1 ATP5H UBA52 CXXC4 FAM127A SPOCK1 OCIAD1 CABP1 CPLX1 PDCD5 AK5 PJA2 TSPAN7 SERINC3 RPL31 RABAC1 ARPP19 CBX6 RPL32 ATP6V0D1 CA11 ENO2 NUDT21 SYT11 RTN3 TM2D3 SYN2 MDH2 ATP6V1G2 ATP6V0C RPL17-C18ORF32 TUBB RPL17 RP11-20I23.1 RP11-111M22.2 RPL13A DNAJC21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "mixed excitatory neuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RPL21 SYT1 MT-CO1 SYNPO NECAB1 GPM6A CHN1 CALM2 FTH1 RTN3 PKM MAP1B TSPAN7 GDA RPL38 MT-CO2 HS6ST3 RPL41 RP11-111M22.2 HPCA RPS27A RASGRF2 MORF4L1 APLP2 CAMK4 EIF4A2 MTRNR2L1 RPL26 YWHAG NSF TSPYL1 SYT4 GPR171 ATP6V1F OAZ1 TPD52 ATP1B1 PNMA2 MFN2 THY1 KCNA1 LGALS1 PJA2 TENM3 GPX3 KRAS MAL2 FAM3C DPP6 BLVRB PDP1 CALM1 CKB TESPA1 SH3GL2 NELL2 APP NDUFC2 RPS4X ONECUT2 STMN2 ELMO1 HDDC2 SLC17A7 PGM2L1 CDK5 PRDX3 ACTB MAP7D1 TAGLN3 PSD3 RPL37A PTPRN DYNLT3 POMP EPB41L3 SNCB PTPRN2 PFN2 CAB39 MT-ND2 USP5 VSTM2A NDUFA4 MRPS28 NAT8L PCP4 TGOLN2 NEFL SIRPA GABRA1 UBB CDK5R1 OLFM1 PRKAR1A LMO3 GNAQ MTRNR2L12 RPL11 OCIAD1 KIF21A KLHDC3 MT-ND4L CLU MTRNR2L6 EIF4G2 NPTN ATP2B4 PSMA7 IPCEF1 PEBP1 SYT13 DYNLRB1 GAPDH TCEB1 TSPYL5 PPP3CA BASP1 ATP2A2 SNAP25 TCEAL5 RPL35 TUBA1B HSP90AB1 GDI1 SRP14 SLC9A6 ATP1A1 NDN FAM84A TBCB PRDX2 PTK2B FKBP4 CD99L2 ACTG1 GRINA MAP1A RPL32 SCN3B RGS4 SHARPIN ARF1 NAP1L2 TSC22D1 DKK3 RPS28 PIK3R1 NDFIP1 NDUFB4 MAP2K1 TMEM130 MT-ND3 PREPL SLITRK1 TUBB2A RPL13A NR1I3 BSCL2 ARFGAP2 PCDHGA5 PCDHGA6 PCDHGA10\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "mixed excitatory neuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: CHN1 NRGN RP11-111M22.2 RTN1 SYT1 YWHAH RPL37A SNAP25 ATP1B1 HOMER1 CALM2 ARPP19 ARL6IP5 SIRPA SLC39A10 BTBD10 TSPAN7 BIRC5 RPL41 ENC1 PRNP NDRG4 STMN2 GAP43 SYT13 TMSB4X PPP3CB TSPYL1 NR1I3 TBC1D15 DNAJC21 MPP1 PSD3 TRIM36 CRIP2 ATP5B EGR4 PPP3CA GABARAPL2 SLC12A5 HSP90AA1 FXYD7 UCHL1 ATP2B4 KCNC2 TOMM7 FKBP1B ELAVL4 PTPRN DMTN COL12A1 SCN1B DCTN1 SLC38A1 CAMK2G CHL1 INPP5F RPL3 COA3 DSTN SNCA RPL36A NAT8L LMO3 RPL11 DIRAS2 OAZ1 SV2B PRKACB SULT4A1 UQCRC1 C1ORF115 EGR1 TM2D3 LPPR4 OPCML COX4I1 SYT4 RORB POLR2L RPL31 BEX1 CMAS DYNLRB1 SNCG RPL21 CNTN6 COL5A2 BAG4 PLCB1 TMEM59L NDUFAF2 ANXA7 CKLF RPL10A MT-CO3 MRPS21 OR6D1P TRAPPC1 SARAF RGS4 MAP1B NDUFA13 NEFL CALM1 UBA52 SH3BGRL3 RPS28 MTRNR2L1 FAM3C PPP2R2B POMP EXTL2 ZFAND5 FTL RPL13 GTF3A SERPINI1 CPE TMA7 GDA GPR158 LRRIQ1 BSN COPG1 CFL1 PDE1A SLC38A11 RHOB VAMP2 SEPW1 PPIA MARCKS CA11 CLIP3 KCNC3 YWHAG GPM6A AP3S1 TUBB2A FBXO2 SLC30A3 RHEB PREPL IPCEF1 BSG CD99L2 CRKL ACTB ZNF385D RAB3B SYTL2 ARFGAP2 MTRNR2L6 IDS TUBB3 NGRN AC244489.1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "mixed excitatory neuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO2 CHN1 MT-ND2 MT-CYB MAP1B MT-ATP6 SYT1 PPP3CA ATP1B1 RTN4 ENC1 HSP90AA1 SNAP25 MT-ND3 MT-ND1 PSAP TPT1 MT-CO3 CAMKK2 SPARCL1 GAPDH GAP43 DYNLRB1 MT-CO1 FAIM2 LMO4 RPL38 APLP2 TPD52 DNAJA1 PLCB1 RPL31 PEBP1 EID1 MT-ND4 SCN1A COL6A1 ARPP19 GDI1 CALM1 ZNF385D RAB3B SYTL2 TBC1D15 CLU GABRA1 TUBA1B THYN1 TOMM7 FAM134A ATP2B4 RAB7A RPL35 PRNP ATP5E SCN3B GOT2 ITFG1 RCAN2 SYNJ1 RPS19BP1 DSTN TAGLN3 LYNX1 PIP5K1B MED10 LAMP5 RP11-111M22.2 FKBP1A REEP5 NHP2L1 RPL26 FTH1 KIF21A MLF2 SERINC1 CDS1 LAMTOR5 CLSTN1 AKAP12 ATP6V1E1 LDB2 SYNPR PRKAR1B FAM174A COX5B VAMP2 CERS6 TMEM130 COMMD6 ATP6V1B2 APLP1 RTN1 NDUFS5 RPL37A VSNL1 CRIP2 RGS4 STX1A RPS5 RPL6 MT3 VDAC3 IGFBP5 S100A16 LMO3 CKB MRAS RPL11 MAPK1 DDN GLRA3 RPS28 PHYHIP CALM3 NARS TMSB4X ABHD14A CD99L2 DPY30 CALM2 ID2 LPPR4 SLC25A4 RPS12 TMEM11 NREP PCDH8 MT-ND5 UQCRH SMS ATP2B2 CREG2 TUBA1A MPP1 CTNNA2 PPP2R2C GDA EIF4A1P8 SULT4A1 TSPYL1 EIF4A2 ATP5F1 CYFIP2 GSTT1 MDH2 SUMO1 ATP6AP1 CDK5R1 NEFL PEF1 CHMP5 MT2A SCAMP5 PGM2L1 ITM2C NUAK1 RAB2A COX7C ATP5I RBX1 EFR3A KIF5A TERF2IP RASGRF1 NDUFB4 HSP90AB1 HSPA4 CABP1 NDUFAF2 YWHAH TSPAN7 NEUROD2 UCHL1 HAPLN4 PREPL CAMK2G NDRG4 SEPW1 TSC22D1 NAT8L NRCAM YWHAZ FABP7 PAK1 RPL13A RPL21 NGRN NDUFA13 ANKRD18A GABARAP BIRC5 RPL18A RPS3A KLC1 DNAJC21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "mixed excitatory neuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RPL38 RPS15 SYT1 RPL31 TCEB1 SNAP25 RAB3B SYTL2 MT-CO2 STXBP1 ATP1B1 RPL37A RP11-111M22.2 OXR1 RTN3 RPL26 VDAC1 RPS4X CDK5R1 SNAP91 PRNP MAP2K2 HSP90AA1 STMN4 MAL2 YWHAH RPL41 STMN3 INA GRIN1 ADAM23 AP2M1 RPL11 RPL35 UBB BEX1 CALM1 COX7C CHN1 OLFM1 RAPGEF5 SYN2 CEND1 ATP6V1B2 MT-CO3 MORF4L1 MYL6 MT-CO1 RAB6A TSC22D1 UQCRH ESCO2 TBC1D15 TUBB2A MAP4 APP SH3BGRL2 DNAJA1 WASF1 MT-ND1 PGAM1 COL5A3 MTCH1 TCEAL2 CHGB MPPED1 AES SLC12A5 ELMO1 RPL39 KCNAB2 SCN1A PNMAL2 NPTX1 HINT1 FBXL16 C11ORF84 FKBP8 ATP5G3 LRRIQ1 B3GALT2 ADORA1 REEP5 GFRA2 HMGCR MTG1 PGRMC1 CADM2 NDUFS5 SCD5 SERINC3 PJA2 RASGRF2 SYN1 FKBP1A YWHAZ ARPP19 EIF4A2 SNN PSAP NDN SUMO2 COX7A2 CNTN1 RPS27A TXN WSB2 PRKACB RPL12 COX6A1 APLP2 NRGN KLHDC3 POLR2I RLIM DIRAS2 GPM6A C6ORF141 PPP3CA NDFIP1 DKK3 POLR3H SNX10 UQCRQ CCT5 FIS1 ELOVL7 OAZ1 PKM YWHAG HK1 HS6ST3 SERINC1 C14ORF2 PLCB1 POLD1 PSD3 RBX1 NDUFB7 PDE1A ATP5E LMO4 NUDT21 SLC17A7 RPL15 PRKCG FAIM2 RPL8 UQCR10 PPA1 MAP1B COX5B RASGRF1 PDP1 CDKN2D TMEM130 CLDND2 NEFL GSKIP CAPZA2 ITPR2 INPP5F RPS26 MT1X CALM3 PPP3CB TMSB10 COX6B1 NFIA ATP2A2 TMEM59L FTH1 LPPR4 SULT4A1 HSPBP1 MAP1A NDUFA2 SEZ6L2 PPIA ACLY MARCKS CLSTN1 RGS4 PTMA ARF1 PEBP1 EIF1AX TBR1 RHBDD2 NDUFV1 THSD7A MAPRE2 CLTA APLP1 ARF3 GNB1 CHL1 UBA52 MT-ND4 VDAC3 UCHL1 CDK5R2 GRINA APBB1 TSPAN7 NELL1 RSL24D1 NCAM2 MTRNR2L1 MAPK1 SYNJ1 OPN3 BCAP31 RTN1 ZNF365 ENC1 ATP6V1F BEX4 GDA ENOPH1 NTNG1 GABARAPL1 CYC1 ARL8B RNF11 NCDN ENPP2 NCEH1 GNAQ HSPA8 KCNC3 MT-ND2 DDN PAM RP11-219A15.1 CFH MTRNR2L6 ALDOA MYOM2 PAK1 BSCL2 RPL21 AC244489.1 PCDHA9 PCDHAC1 PCDHA10 PCDHA4\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "mixed excitatory neuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO2 MT-CO1 MT-CO3 CALM1 SNAP25 SYT1 MT-ATP6 CHN1 PLP1 SPARCL1 PRNP RAB2A CYFIP2 MBP MT-ND3 PPP2R1A GPM6A KLC1 MT-ND2 CADM2 ENC1 PRKCB TMEM144 SCD5 ETS2 MTRNR2L1 PREPL YWHAG RTN3 DYNLL1 FAIM2 MT-ND4 MTRNR2L12 BSG PLCB1 YWHAB SLC9A6 NPTX1 OAZ1 MT-ND1 RPS15 MAP1B WASF1 CALM2 TPT1 GDI1 UQCRB NCOA4 CDK5R1 CLSTN2 ACTG1 CACNB1 PPM1A DNAJA1 MAL DCLK1 MFSD6 KCNMB4 PAQR8 CPLX2 SYT11 HTR2A ERMN SEZ6L2 ELAVL4 TOMM20 LMO3 CCK NDUFA5 REEP5 SRP14 RP11-111M22.2 ACTB NELL2 NECAB1 TMCC3 ARL6IP5 SNCA RTN4 OPN3 EIF1 RPL31 PTK2B MZT1 SPTBN1 ARL6IP1 LDHB UQCR11 MORF4L2 CAPZA2 COX6C MTND1P23 SYN2 CLIP2 CYCS RPL8 CTBP1 CDK17 FKBP8 MRFAP1 TSPAN7 NCDN MTATP6P1 GABRA1 BASP1 DKK3 SPOCK1 PEX5L COX4I1 PNMA1 FAM96B CNRIP1 AK5 GLRA3 ARHGDIA QKI NRGN THY1 C12ORF57 GOT1 LPPR4 HSP90AB1 YWHAH VSNL1 CRIM1 CLSTN1 CLTC SNN SSBP3 FTH1 TUBA1B WDR47 OXR1 HSP90AA1 TCEB2 FABP5 FTL HIST1H2AC CNP CREG2 C11ORF31 MT-CYB ZBTB20 GHITM NEFM KIF3C ITM2B FAM127A ATP5B RHEB RAP2A TSC22D1 GLUL SYNGR3 NAPB CRYAB DNAJB6 DLD CSDE1 FGF12 DACH1 UBQLN2 CKB SCN1A PCDHGA5 HN1 SARAF MORF4L1 FAM219A PPP3CA SOSTDC1 TMSB10 MYRF GDA SLC39A10 DPYSL2 SERF2 PACSIN1 EDIL3 SIRPA PPA1 YWHAQ PCSK1 SMIM13 NAPA APP SEMA3C ATP5O PCDH17 EFR3A TCEAL2 SERPINI1 UBA1 PGRMC1 VAMP2 RAPGEF5 DGUOK KIAA1045 RPL15 COX6B1 TSC22D4 CREB5 CFH SYNJ1 TAGLN3 SYTL2 IDS RAB3B GTF2H2C_2 HNRNPA1P40 NR1I3 PLEKHD1 TBC1D15 DNAJC21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "mixed glial cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 MT-ND1 MT-ND4 TBC1D15 EDIL3 CLSTN1 MT-ND2 SPP1 ZBTB20 GABPB1 ZFAND5 APLP1 MBP SCD TMEM144 MT-ND3 APBB1 CNP CLDND1 MTRNR2L12 SNAP25 RPL7 ACTB FTL MT-CYB MTRNR2L1 HHATL NECAB1 MT-CO3 SCD5 ARFGAP2 TF CAMK2G GRM3 FA2H HHIP TTYH2 KLC2 SNCB CYCS HDAC1 RTN4 ATP1B2 MRPL20 MAP1A MAF RAB2A COL6A1 FOXO1 COL11A1 PGK1 DCLK1 RPL13 RRAGA PRUNE2 KCNJ10 CLU SYPL1 SOX6 MARCKSL1 GUK1 CAPZB KIF1A APP FBXO8 MT-CO2 PDGFRA GPD1 UBQLN2 PSD3 OPALIN CRYAB SCOC SPOCK1 PRKCB MTRNR2L8 CALM2 SLC24A3 LYSMD2 DNAJB6 FOLH1 MAPKAPK2 LINC00086 HIF3A IDS CTC-575D19.1 APOD NCKAP5 FAM107B SFRP1 CREB5 RPS28 TMEM63A HEY1 ATP6V0B ATP13A4 QDPR GPR37 PSMB7 PRKACB THY1 SLC9A6 JUND AP1S1 ANKRD18A ATP9A NEGR1 ANLN MT-CO1 SEPT4 VAMP2 GRINA TMTC4 PPP1R14A ITM2C ATP1A2 GADD45B MTX3 ATP2B4 TSC22D4 MTCH1 HSPA2 FTH1 NEFH NDRG2 PRNP CYB5R3 MEGF10 TUBA1A TXNIP GLUL SOX2 OLIG2 HES1 HSP90AA1 ZNF385D SYTL2 RAB3B B2M MTRNR2L6 RPS3A RPL17-C18ORF32 RPL17\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "mixed glial cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: HSP90AA1 ZBTB20 MBP MT3 GPX4 MT-ND4 ATP1B1 CRYAB NCKAP5 MOBP HSP90AB1 MT-ATP6 QKI SYT1 PLP1 UQCR11 ABCA8 SPOCK1 ARFGAP2 PSD3 DDR2 CBX6 SCD5 RNASE1 GRAMD3 SMS RPL31 RARRES2 BEX4 MAP1B RNF182 COL5A3 CLDN11 ATP5G1 COX7C TOMM20 AP2B1 PPAP2B ATP5E SEZ6L2 RPL37A FIGN POLR2L PTPRS SNRPN FXYD6 CARNS1 TRIM59 CADM2 TMEM235 NKX6-2 PPP3CA CNP MT-ND2 FILIP1 NPTX1 RGCC OLIG2 TMOD2 GLUL EIF4A2 POLR2J TOMM7 AURKAIP1 PEBP1 PGAM1 DCTN3 RPS6 CLMN CTNNB1 ARF1 RAMP1 PPP2R2B RARRES3 GAPDH LRP2 SIRPA GPR37 RPP40 GPRC5B DNER PXDC1 FAM96B DMTN ACTG1 NDRG2 TLE4 CAMK2G MYOM1 BNIP3 CTSD FTL MGST3 NDFIP1 NDUFV1 PHYHIPL NDUFA13 KIT GDE1 C10ORF54 TUBA1A PBXIP1 ERBB3 FTH1 FAM149B1 PRNP PTPRZ1 APLP1 ATP5I RPL10A JOSD2 SPRYD3 PTMA SEPT4 RELL2 TF YBEY CALM2 CALM3 SLC1A3 NME1 EHD3 TM2D3 SCD RP11-597D13.7 OLIG1 RAB3B SYTL2 ESCO2 ZNF385D ATP6V0C B2M RPL41 ALDOA SERPINA3 RPS12 RP11-20I23.1 RPS10 RPL13A DNAJC21 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "mixed glial cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 RPL23A MT-ND2 CRYAB PTGDS MBP HSP90AA1 ARL6IP1 TUBA1A RPL15 SPARCL1 ATP1B2 FTL MT-CO3 MT2A TLE4 RPS28 RPL6 CLDN11 RAPGEF5 GPRC5B ZNF385D RAB3B ESCO2 SYTL2 PRDX1 RPL31 MYRF DSTN PCBP1 CSF1R RPS4X VCAN NDUFB7 SPP1 PTPRS SRP14 ARL8B FABP6 LAMA2 PEA15 DPP6 H2AFZ GSTP1 ABHD14A CALM1 CLMN DYNLL1 RPL13 GFAP ITGA6 NDUFB2 VWA3B PSMA7 SLC2A1 ERBB3 APOD FABP7 AP3S1 ARL6IP5 COX6B1 RAMP1 CAB39 NOTCH1 TMSB4X QKI TUBA4A HTRA1 RPS15 NDRG2 ATP5E COX6A1 NKX6-2 C4ORF3 COX8A ENPP2 ABCA8 CCK ZBTB20 ASAP1 RAB40B COX4I1 FAM107B RPS6 LGI3 RPL7 RPL37A RPL32 MARCKSL1 ITM2C NHP2L1 MTUS1 GORASP2 CALM2 RPL26 VAMP2 PTGES3 CP DNM3 KLHL5 EPS15 ATP6V1G1 RPS3AP12 CCDC152 TUBA1B ADARB2 SELM ATP1B1 MT-ND1 TMEM235 SARAF OPALIN SLC1A3 FABP5 RAB6A MTRNR2L12 FIGN LGALS1 RAB3IP SOX6 MT-CO1 ATP5J2 MT-CO2 TUBB4A RTN4 GRAMD3 TMA7 CD53 ATP5A1 GJA1 ACSS1 GPR17 TSC22D4 ZFP36L2 SEC61G ATP5J CNP RPL11 GABRE WIF1 SEZ6L2 ARF1 MT-ATP6 F3 PGRMC1 TOX3 KCNJ10 MAP1A RPL13A DNAJC21 TBC1D15 RPL17-C18ORF32 ANKRD18A NSF C18ORF32 RPL41 GABARAP RPS10 AC244489.1 HNRNPA1P40 NR1I3 PLEKHD1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "mixed glial cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 PTGDS MBP TF SLC1A3 RPS6 FTL PAQR8 BIRC5 HIST1H2AC ABCA8 QKI CDC42SE2 RORB ZBTB20 PSD3 OPALIN MYRF PLEKHG3 CADM2 AQP4 TUBA1A METTL7A MTRNR2L12 MTRNR2L1 PTMA HNRNPA1P40 TSPO ZFP36L1 PEBP1 CREB5 SRP9 GNAQ MDH2 AXL PRR18 RHOB PEX5L C18ORF32 GMFB RPL23A WLS MT2A HMGCR SCD SLC1A2 TMEM88B MYEOV2 GJA1 SLC14A1 DOCK10 CLU QDPR CHI3L1 TSC22D4 APP NKX2-2 MOBP PPTC7 PDE1C WFS1 PHPT1 TPD52 GJB6 SERF2 TMTC4 TPPP PLCB1 APOL6 TTYH2 KIAA1211 CYBRD1 SPTBN1 PTPRZ1 GFAP RREB1 GPR98 SCD5 PJA2 ITGB5 GPRC5B COX17 STOX1 HSD17B3 DKK3 CTDSP1 CTSD STXBP6 UQCRB BCAS1 CRIM1 VEGFA CLDND1 GDI1 MTRNR2L8 ASAP2 ST18 MAP1B AHNAK ETNPPL RP11-597D13.7 MT-ND1 CD63 SLC25A48 ENPP2 EPS15 PRNP MT-ATP6 CPE DYNLL2 TLE4 CNP PRUNE2 HHIP EDNRB STON2 FTH1 ACTB MTND1P23 COL5A3 CLSTN1 ERBB3 PRKAR1A PAX6 PPP3CA GRAMD3 HIF3A NPTX2 PIEZO2 GPR37L1 PFKP HTRA1 BEX1 ARL4C NDUFB5 RPS10 RPL21 MTUS1 TRIP6 ARL6IP1 YAP1 ASAP1 SNRPN RGCC CKLF CLDN10 NTNG2 CAPZB CAPZA2 RPL13A\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "mixed glial cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MT-CO2 MT-ND2 MT-CO1 MBP MTRNR2L12 MT-ND4 MT-CYB MTRNR2L1 MT-ND3 RPL21 SCG2 MARCKSL1 PREX2 PLP1 MT-ATP6 RPL15 SLC6A1 MORF4L1 MOBP SLC38A1 RNASE1 MTRNR2L6 PRPS1 LGI3 FKBP4 WDR4 SLC6A17 DYNLRB1 MT-ND5 JUND SPOCK3 SYN1 AP2B1 BAI2 RP11-111M22.2 CD99L2 ATP2B2 CTSD RPL23A SEPP1 SNAP25 ITM2B SPOCK1 ARL4C RGS12 MGST3 AKAP12 CFH DNER YAF2 PSAP LINC00087 SOX9 MT-ND4L SERF2 CADM3 CALM2 WDR47 GRM8 RTN4 NAPB COX5A PTCHD4 PRKCB DYNLL2 ERMN TSPAN7 OCIAD1 TMSB4X CREB5 TRPC3 RAB6A TMEM151A NPTN DMKN MT-ND1 CALM3 CHN1 SNAPC5 PROX1 PPA1 PPP2CB ARHGAP35 TOX3 ZNF536 EGFR PSD3 TMEM144 PPP1R9B RPL37A RPL32 ZBBX LAP3 ERBB3 MAP1LC3A NRF1 PCDH19 INSIG1 CNTN1 TUSC2 SSBP3 TOLLIP RPL11 GPR37 TCEAL5 C14ORF132 COL9A2 ARHGDIG ATP1A3 CPLX3 GAD2 TRABD2A ATP1B1 ADSS RAB3B PLEKHD1 RPL41 TF TUBB\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "mixed glial cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RAB3B GFAP PLP1 MT-ND4 MBP CLU ABCA8 ZBTB20 SLC24A2 TF RPL18A AQP4 ENPP2 EDIL3 SPP1 NRCAM RP11-597D13.7 OLIG2 TUBA1A OPA1 SPOCK1 AP1S2 HES1 MT-CO2 CD63 DNAJC6 WLS CLDN11 APBB1 GMFB ERBB3 COL4A5 PSMC5 PDE1C FAT3 RPL10A ERMN CRYAB HIF3A C1S NGFR RPL13A ACTR1A UQCR11 FTH1 VCAN MYRF CYP2J2 PPP3CA ATP9A ZFP36 PHKG1 SLC6A12 USP27X PLIN3 NDUFB5 SLITRK1 PCDHA4 EMX2 NDUFB1 RTN4 COX7C ATP1B1 TLE4 ATP1A2 RPL35 ATP1A3 MT1E DLD APLP2 CDH19 HHIP RELN EMP1 ENO2 NINJ2 BLOC1S1 GAPDH PPP2R1A SOX2 PAQR8 ANGPTL4 PTPRZ1 S100B ATP2B4 FGFR3 C20ORF24 SUMO2 MT1G PSD3 UBE2N PIP4K2A RPL15 SNAP25 TMEM144 ATOX1 IFI44L MTRNR2L1 RTN3 MT-ATP6 PSMB7 PSMD12 HILPDA SPARCL1 PLEKHG3 PCBP1 CLTC NECAB1 PSAP TMEM147 FAM189A2 SERINC1 PRNP GPRC5B DLC1 GPX3 NARS GLUL CALM2 SPATA13 NDRG2 ST18 RPL36A MEGF10 UTRN CADM2 SOX10 TOMM70A APOD ZFP36L1 CLMN PRKACB QKI OPALIN FGF2 IL33 IFI6 AURKAIP1 RAPGEF5 TMOD2 PHYHIPL CDK17 ZFHX4 DSTN UBA1 MTUS1 COL5A3 RELL1 SRP14 MORF4L1 PPP1R14A C1D MIR6723 MT-CO1 IDS RP11-219A15.1 PCDHGA5 PCDHGA10 PCDHGA6 TBC1D15 SYTL2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "mixed glial cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RAB3B MT-ATP6 MT-ND1 MT-CO1 PLP1 FOS ARL4C DNER ZCCHC24 MT-CO3 YWHAB MT-ND3 QKI EVI2A SYT1 TGOLN2 MT-ND4 SERINC3 RPL6 ZNF385D HHATL RPL3 ROBO2 RPS27A SEPP1 TMEM258 TAGLN3 RP11-597D13.7 GAPDH TEX2 TPT1 SERPINI1 SEPW1 TMEM35 NCALD GNG2 RPL12 GABARAPL1 ATP6V1G1 SPOCK3 MAP4 INHBB TUBA1B SLC24A2 SPOCK2 TMEM88B SCN3B OLIG1 CLDN11 MAP7D2 ATP5G2 CLU PRDM1 CNP AZIN1 PNMA2 NDRG2 CNTN1 ARL2BP RPL32 YWHAG APLP2 CDK5R1 PIK3R1 MT-CO2 SOX6 OXR1 NRSN2 CLTC PTGDS PRKAR1B KCNJ10 CTC-563A5.4 CDH7 CALM1 DNAJB6 CKB KLHL5 RPL11 NDUFA13 MTATP6P1 GAD2 HSPE1 TXNIP RTKN MTRNR2L1 UBL5 SLC31A2 PFN1 NMU TUBA4A SARAF FIGN UQCRB COX7A2L RPS15 FBXO2 MT-CYB PRKCB MTX3 PRKAR1A DPP6 MAFB PDE1A KIF21A HEY1 SNAP25 PRKACB SPP1 ACTR6 VSTM2L MTRNR2L12 TSPYL1 TIMP2 CLSTN1 EFHD2 ACSS1 SLC9A9 CAP2 ZNF343 DKK3 TMOD2 RAD23B RPL26 SOX2 NPTXR STMN2 MTRNR2L6 CDK14 TMEM59L TOX2 DIRAS2 PIP4K2A SLC39A10 SPARCL1 LMO3 LANCL1 ITM2B ATP1A1 FAM84A RHOA NCEH1 ARL6IP1 COX6A1 GRIP2 APLP1 RPL37A VPS35 OPRM1 IDS NSF OR6D1P RPL36A TBC1D15 ESCO2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "mixed glial cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 MT-CYB RTN4 FTL RPS10 TF GPRC5B RPL37A RPL26 SAP18 ATP1B1 SYT1 SLC1A3 TUBA1A MAP1B MBP MT-ND3 TMSB4X MT1E MT-ND2 SYTL2 RAB3B DNAJC21 TBC1D15 KCNK1 NGFRAP1 VWA1 RPL36A SAMM50 RHOJ SOX10 KCNMB4 TUBB4A SNCG EDIL3 ATP5J ATP2A2 NDFIP2 ATP6V0B PLIN3 PVRL1 PTGDS ST18 PAQR8 MDH1 GFAP ACOX2 NELL2 GLDN GPNMB SEMA5A FAM96B EIF1 MT-ND1 MTCH1 MT-ND4 MAGED2 BCAT1 ATP5E CNP RASSF8 DYNLRB1 MT-ATP6 FAM107B CREB5 DOCK10 RAPGEF5 RAB7A SOX6 STAB1 RPS27A SRP14 MAP2K2 ATP6V0E2 DPP6 RGS12 CALM1 TSC22D4 LDHB NDUFS6 ABCA8 TBCB ACTG1 MT1G MT1F PAK1 TSPAN7 ENPP2 RPS2 CORO2B CPE ZNF365 RPL35 ATP11C CALM2 SEPW1 QKI CLTC PIP4K2A ATP1A2 SEPT4 RASGEF1B CLSTN2 SOX2 HMGCS1 HSPE1 PLEKHD1 S100A13 LMO3 RPL41 SUMO3 CHCHD2 CLDN11 TLE4 PTPRS SPP1 MT-CO3 ETNPPL NDUFC1 RBX1 PMEPA1 F3 TMEM147 GPR56 SERF2 PGAM1 UROS MTPN PSMA7 SPARCL1 TMEM88B EIF4G2 GABARAPL2 NECAB1 EPB41L3 ERBB3 PRNP GPR98 CLU ARHGAP24 UQCRQ UBC C14ORF132 CRYAB TPT1 S100A1 EGR1 B3GALT2 MT-CO2 FIS1 RPL7 IFI27 NDUFA13 PGK1 RPL18A GTF2H2C_2 RPS28 ZNF385D\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "mixed glial cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 FTH1 SLC1A2 SLC1A3 ZBTB20 GLUL SNAP25 ACTB HIF3A GAPDH NFIA EMX2 COX7A1 QKI HHATL GPR98 MTUS1 TF CALM2 MRPL47 ATP1A2 PFN2 ATP1B2 RP11-219A15.1 ATP6V1A PDP1 BSG TXNIP MT-ND3 PLEKHG3 SPP1 SEPP1 BIRC5 EPDR1 METTL7A NPAS3 GNAQ TMEM144 NDUFA1 TTYH2 PCMT1 NDFIP2 SYNGR1 MBP PARP9 MRPL33 MT-ND4 CA2 CPE OLIG1 MDH2 EDIL3 PSAP ITGB4 NAT8L PTPRZ1 NPTX2 PRKAR1B MED10 RAP2C ZBTB18 EDF1 MT3 MORF4L1 CD63 TLE4 RPS6 MT1G TNNT1 MT2A MT-ND2 ITM2B GSTT1 ID4 MYBPC1 CLDN11 CHL1 HTRA1 ATP6AP1 STON2 CLDND1 BMPR1B PTMA DPP6 DLC1 STXBP6 ADORA1 CDK17 FKBP4 COL21A1 TMA7 CD9 AIF1L ITGA6 SIRPA EDNRB IGFBP7 RASSF8 CALM1 RPS12 MT-CO1 SQLE CLU MTND1P23 SYTL2 RAB3B RPS3A MT-ND1 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "mixed glial cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: GFAP PTMA GPR98 MT-CO2 RANBP3L SPARCL1 MT-CO1 ITM2B NFIA TF MT-CO3 FRMD4B PTGDS GJA1 SLC1A3 AQP4 PPAP2B CLU MT-ND2 AHNAK MT-CYB HSP90AA1 ATP1B2 QKI SLC1A2 STON2 MT-ND3 MEGF10 ATP2B2 VIM RPL11 GRAMD3 COL5A3 ITPR2 MT-ND1 MT3 TUBA1A PTPRZ1 HGF RPS15 PMP2 JUNB F3 RPL37A CPE GLUL ZNF385D SYTL2 RAB3B MBP PLEKHF1 SMIM13 ALDOC AGT RPL41 VAPB NDUFS5 HAPLN4 POMP COX7A2 ZFAND5 COX6B1 TPT1 ERBB3 PGAM1 RORB PSAP SRP14 MT2A CTBP1 PREX2 ZFP36L1 PEX5L ADARB2 SALL1 OR6D1P DKK3 SLCO1C1 CHI3L1 PPP2CB TMEM144 FTL NKX6-2 CKB NPAS3 REPS2 ENO2 COX4I1 UHMK1 ALDH1L1 BIRC5 GPR37L1 TRIM47 MT-ND4 ZBTB18 CA2 GLDN LINC01085 COX7B FAIM2 RPL38 CAMK4 TXN SYT11 WDR47 RPS28 ATP5B TMEM258 RPL36A COX5B RAMP1 MTUS1 EIF1 ACSS1 FTH1 CADM2 DLD EID1 SPTBN1 SNAP25 ENO1 ACTB RPL31 RPL32 MAGED1 PIP4K2A TEX2 ARL6IP5 NDUFA13 ZFP36 TSC22D4 MT-ND5 MAST3 S100A13 ISCU ST18 FOXO1 SLC39A12 EDIL3 NHP2 SOX9 TGOLN2 SH3RF1 TUBB4A SERINC3 ZCCHC24 LYNX1 SNCAIP HHATL TCEAL2 CNTN1 SIRPA DHCR24 MT-ATP6 PPP2R2B WLS RPL12 STOM BMPR1B RPS27A CBX6 NACC2 BCL6 PLP1 TXNIP METTL23 ATP5I ZBTB20 SEC61G PRDX2 LAP3 ACACB AEBP1 MTRNR2L8 COX7C C14ORF2 RPL13 MTRNR2L12 UBA52 MT1M CLDND1 MLC1 PPP2R4 MAOB MRFAP1 NUAK1 NUDT4 RNASEK-C17ORF49 RP11-219A15.1 SERPINA3 RPS3A ATP6V1G2 RPL13A ARFGAP2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "mixed glial cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: TSHZ2 PLP1 MT-CYB MT-ND4 SYT1 SLC38A1 ST18 MT-CO2 DNAJC21 PTGDS ZBTB20 MTUS1 TLE4 MT-ND3 APOLD1 TF SPP1 AK5 HSP90AA1 TXNIP FSCN1 HHATL BSG SYN1 NPTX1 MT-ND4L PPP2R2B SSTR2 SSBP3 RPS3A CLTC OCIAD1 RP11-111M22.2 GRIK1 CACNA2D2 RNA5-8SP6 PPAP2B CAPZB CNRIP1 GPRC5B TTYH2 OLIG1 CSRP1 C10ORF90 BCL11B TMEM144 FTH1 APBB1 PTX3 COX4I1 NDUFB1 CCDC124 RARRES3 GADD45GIP1 ERBB3 IDI1 HSPA2 CALM1 ISCA1 RPS15 YAF2 RPH3A MT-CO3 MBP MTRNR2L12 RCAN2 NDRG4 SLC17A7 STK39 PAFAH1B2 DOCK10 CTSD MOBP PIP4K2A EIF1 ABHD8 WIPF1 MYEOV2 CLMN SLC22A17 TPT1 MAP1B RHOA MZT2B CKLF MAST3 FRMD4B MTRNR2L1 OAZ1 TERF2IP TCEB2 RTN4 C7ORF50 PIK3R1 ATP1B1 GNAQ ASAP2 CCT5 NECAB1 PJA2 CTC-575D19.1 SKAP2 SCD5 DKK3 YWHAQ MTCH1 BASP1 CLDND1 KIF5A SEPW1 MTRNR2L8 CD63 BAALC METTL7A PPP1R7 HILPDA PEX5L RPS12 ANKRD18A RNASE1 TBCA ELAVL4 RPL13A MTRNR2L6 ARFGAP2 RAB3B SYTL2 ZNF385D\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "mixed glial cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SLC1A2 SLC1A3 CLU PTGDS RAB3B SCD ZBTB20 MT2A F3 RPL11 EZR SNAP25 TUBB2B NDUFV1 PPP2R4 NDFIP1 GRIN2C ANGPTL4 ACAT2 PRKAR1A SPARCL1 EIF4A2 MT-CO1 SKP1 RPL3 NREP GLUL WBP2 SOCS3 GAPDH TF ZFAND5 MT-ND2 RPS28 YWHAG FIGN PBXIP1 CYB5R3 COL5A3 HILPDA PLSCR1 PTPRZ1 MT-ND3 QKI NDRG4 ATP2A2 GADD45B IFI35 ZFP36 TMEM147 SYT17 RPL21 RHOB RNASE1 SLCO1C1 NDUFS6 CLTC MAPRE3 AGT TIMP2 ID2 CALM3 GJA1 MYRF NAP1L5 HSP90AA1 PENK PSMB5 ATP1B2 GHITM WFS1 APLP2 TBR1 DNAJC5 PLIN3 PSMC5 GRM3 MTND2P28 SLC44A3 BNIP3 CYFIP2 PRDX2 FAM131B MRVI1 CLMN ALDH1L1 FAM127A MAP1LC3A CPE TSPAN7 SLC6A1 PAMR1 PRELID1 SMS LCNL1 MT-ND4 PRDM16 COPE OAT HSPE1 ABCA8 SNRNP25 NRGN CRISPLD2 FASN GABRQ LIG1 GBE1 STOX1 SEMA3B MT1X ADM YWHAH RAB31 ACTR1A FARSA SLC25A11 ZFHX4 SRGN ARF3 RPL31 EDIL3 ENO1 APOE NKX6-2 GRAMD3 NRCAM SARAF MORF4L1 CD63 MAP4 STMN3 PEBP1 ENPP2 COX5B CHP1 TMOD2 PPIA CLSTN1 FAIM2 CXCL14 NGFRAP1 RPL39 MAP2K1 VDAC3 CTNNB1 SSTR1 PXDC1 TALDO1 IQCK ANGPTL2 EFR3A ATP5A1 STON2 HMGCS1 TPI1 HSP90AB1 PSD3 DNAJB6 PRR18 CLDND1 GFAP YBX3 ARL6IP5 MT-CO2 MRPL20 CPNE2 TKT FBXW11 PDGFRB PLP1 EML3 DPYSL2 RP11-404G16.2 OLFM2 CNP MSMO1 SPTBN1 CALM1 PJA2 APOLD1 TLR4 MIF ATP6V1G2 AC244489.1 PCDHGA5 PCDHGA6 PCDHGA10\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "mixed glial cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 MBP ZNF385D MT-ND4 MT-ND2 MT-ND3 ZBTB20 MT-ATP6 MT-CO3 MT-CO1 MT-CO2 CLDND1 MOBP TBC1D15 APLP1 TMEM144 MTRNR2L12 QKI PDE1C EDIL3 CRYAB SCD FTH1 MT-ND1 TF MTRNR2L1 PRNP HSP90AA1 SPP1 CREB5 QDPR ERBB3 TMEM63A ATP1B1 SEPW1 CCK CALM2 NDRG2 CNP MT-CYB ALCAM PTGDS CSRP1 TXNIP HSP90AB1 FKBP8 DPYSL2 VAMP2 RTN4 PTMA STMN1 MAL ATP5I SNAP25 TMSB4X FTL DNAJB6 RPS27A GAPDH ITM2B RAPGEF5 RPL3 MAP1B NAPB FRMD4B MT-ND5 ITFG1 NDUFA4 CTSD S100B SELT ETFB SLC1A2 RPL41 SEMA3B IFI6 CALM1 JUND TLE4 FAM107B CFL2 PKM FSCN1 APLP2 UBA52 TRHDE RP11-597D13.7 RPS15 FGFR3 CD9 ENC1 SOX2 UBE2L6 SNRPN GPCPD1 RTKN NFE2L1 IQCK TPD52 TALDO1 CLU PDK4 RAB3IP PLCB1 RAB7A SCD5 FA2H ENO1 SYNGR1 PRDX1 MT3 GLUL TMEM151A EIF5A2 PPA1 APOD CAP2 C1ORF115 PLD3 NFIA RTN1 CTNNB1 MORF4L1 ELAVL4 KLC1 CTC-575D19.1 HHIP NDUFA13 EID1 OLFM1 RPL13 GOT1 SPOCK1 ST18 CADM2 MT2A PEA15 PPP3CA PRKACB MARCKSL1 C1ORF52 FOS ZBTB18 LANCL1 PADI2 DOCK10 PJA2 ARF5 ATP5J PPP1R14A RPL21 PDP1 ATP1A1 RTN3 SRP14 TPI1 GPRC5B SCN1A GPR98 PCDHA4 LGI3 DNM3 RPL35 ANLN CYP27A1 DYNLL2 NTNG1 SYT1 INPP5F NDFIP1 RPL7 PEBP1 OLIG2 MAP1A RHBDD2 TUBB4A OXR1 TTN B3GNT7 NPTN CLDN11 COMMD6 CERS6 PHYHIPL FIS1 NHP2L1 SERINC3 SEPP1 MTRNR2L8 PPP2R1A COL4A5 ENO2 SPOCK2 YWHAG ATP2B2 EPS15 PSMD2 TWF1P1 APP SLC1A3 TPT1 RPL11 ATP6V1B2 HSPA2 SNAP91 GPR37L1 NR1I3 IDS ESCO2 BIRC5 TUBD1 BAG4 SEZ6 TMTC4 PGM2L1 UHMK1 CKB DYNLL1 C19ORF70 CAPNS1 SLC31A2 THSD7A UBE2E3 FAM134A NKX6-2 EIF1 PSMD12 SOX9 GADD45GIP1 PREPL RNF181 NGFR WDR47 SGCZ EIF1AX DNAJA1 CBX6 ATP2A2 TRIM47 CLIC4 RPL31 COA3 PNMAL2 ASAP1 BEX4 COX7A2 PSD3 S1PR5 OCIAD1 SUB1 MTCH1 PROX1 UBA1 PPTC7 GJA1 RAP2A COL5A2 GPR37 TEX2 C1QB SPTBN1 RFK SCAMP5 RPL18A MEGF10 ATP5F1 PPP2CA GRAMD3 NAT8L HIGD1A PIN1 PON2 ARPC4 UQCRC2 GABARAP MMD KIAA1755 RPL8 CLMN RNF152 LINC01314 MTUS1 TACSTD2 NSF PCBP1 MFSD6 ATP5O C4ORF3 ATP6AP1 SHISA8 RPS3A GPX4 SYT11 BEX1 PDGFRA ASCL1 ANKRD18A CLTC RPL39 ATP13A4 UBL5 GLO1 CD59 HTRA1 ATP6AP2 PSMC3 PRKAR1A SLC24A2 HHATL GRM3 OR6D1P PHYHIP ACTR10 NOTCH1 TSPYL1 TOMM7 SYPL1 NRGN OAZ1 HINT1 RNASE1 NGEF VAMP1 LINC01296 RPL13A MT-ND4L TIMP2 GLIS3 YWHAQ COX7B PSAP ARL6IP1 SKP1 MYRIP ACTB CDH19 TCEAL5 ENPP2 DNAJC6 FAM127A GTF3A TSPYL5 AZIN1 MRAS RAB6A DGAT2 TBCA SPATA13 OAT TCEAL2 RGS12 RPL15 ARL4C PMEPA1 GMPR NUDT4 PSMD8 MAPRE2 KCNC2 CFH GUK1 TP53TG5 HEBP2 LGALS1 RPL37A BCL6 UQCRH RCAN2 DNER CDK5R2 MGST3 UBE2M LRP4 MAPRE3 RABAC1 SIRPA MAG PPP2R4 FIBIN BNIP3 RPL10A NPTX1 MRPL52 CA2 CCDC141 EHD3 PSMB5 TKT AZGP1 ZNF365 CST3 RPL38 FAM3C YWHAB VSNL1 HEPACAM NUDT21 CHMP5 PAQR8 SLC9A6 IFI16 C19ORF53 ZFHX4 LINC00086 SDC4 TRIM37 CTU2 CRYM S100A6 SLC38A5 PIK3R1 NRF1 SOX4 NEFL SGCD TLR4 SMIM13 CCDC85B SKAP2 SLC24A3 NCAM2 SERPINI1 PRKCE EFNB1 HEPN1 BTNL9 C14ORF2 KIF21A GRIN2A GNG12 FSTL5 SHD COPS8 KCNMB4 HAPLN2 PTPRN TCEAL3 TSPAN11 RPS12 LMBRD2 RAB2A PLEKHG3 NDUFB7 SOX11 PPP2R2B AGT TPPP GDI1 EIF4A2 ARPP19 NTHL1 DIO2 RP11-111M22.2 HSPA8 KCNJ10 NGRN GLDN UQCRB TTYH2 BASP1 NPAS3 RPS28 FAM69C SLC10A4 C1D EGFR LRP1B PFKP ELMO1 RAMP1 NARS CBLN1 TMEM258 GFAP DYNLRB1 FXYD6 GABARAPL1 RGS4 MYRF RPL14P3 LMO4 SHC4 STMN4 FAIM2 CHL1 EVI2A HSPE1 NAA38 AP2M1 PIEZO2 PSMA7 CTNND2 RPS5 NACC2 UBB SHARPIN BSN RAB40B PRKCB GSTP1 FAM84B DKK3 COX6C PFN1 PEX5L CD99L2 YWHAH ADARB2 CCDC25 THY1 NDUFB11 EXTL2 MAF COL5A3 ALDOC STXBP1 PRUNE2 CHN1 TMX4 ATP5A1 RPL26 C12ORF49 DSTN PNKP GPM6A COL9A1 DGKG VIPR2 PPP3R1 ALDH1L1 TMOD2 BSG MAP2K2 OPALIN KLHL13 CYB5R3 TRIM59 RNASEK-C17ORF49 HSD17B3 MTRNR2L6 EPHB6 ALDOA B2M SERF2 RPL36A SYTL2 RAB3B PGK1 ARFGAP2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "mixed glial cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 MT-ND4 CLU QKI FTL MBP SLC1A3 FTH1 MT-CO2 SYTL2 TMEM144 MTRNR2L12 GFAP MTRNR2L1 CLDND1 MT-CO1 SLC1A2 VEGFA MT-ND3 ITM2B NFIA SCD GLUL MT-CO3 DPYSL2 COX4I1 PTGDS TLE4 RPL21 ATP1B2 MT3 MT2A PSAP ATP1B1 RAB3B CRYAB TPI1 MT-CYB SPP1 UBA1 FAM189A2 HHATL PPAP2B PTMA ATP5I RTN4 ATP5G3 GPR56 GPRC5B JUND SOX9 YWHAZ ST18 MRPL33 TUBA1B HSP90AA1 PON2 MTRNR2L8 RGS16 GPR37L1 COX7C VAMP2 RPL38 TUBB4A CLSTN1 MT-ND1 SIRPA ATP6V0E2 SLC24A2 MT-ND4L AQP4 CALM2 CPE APLP1 ITM2C DPY30 TMEM63A TBC1D15 PLEKHD1 TF ESCO2 DNER GRM3 AEBP1 TXNIP OLIG1 PRUNE2 CDK17 BCL6 C1QBP TLR4 ASAP2 NDUFS6 CREB5 AGT ZNF350 TCEAL3 GPR37 BRINP3 ATP6V1B2 RP11-597D13.7 MYRF SPARCL1 GRAMD3 RGCC GPM6A PTPRZ1 UHMK1 ATP5G2 TMEM147 PTN FSCN1 SLC25A53 NAT8L ZFP36L1 FAM127A DNAJC5 SPATA13 RAB4A NTNG2 SQLE PADI2 ELMO1 GNAQ PEX5L RGS12 NEK6 MT-ND2 SSPN LMO4 RAB11A TNFRSF11B HGF RHEB TPT1 UQCRH C12ORF49 S100A1 SAP18 PCYT2 F3 UBE2E3 LCNL1 ATP5E ALCAM PPDPF TSC22D4 NCDN ACTG1 SOX2 PBXIP1 PPIF METTL7A PDE1C CMTM5 RPS27A TMA7 COX6A1 SHC4 S100B GOLIM4 CST3 HSPA8 SEPP1 PSD3 MAG NDUFC2 CHN1 TMEM132C ALDOC UBC ST6GALNAC3 SNX3 ENPP2 ATXN10 COL9A2 SDC4 KIAA1045 ATP5J FGF2 FABP5 TMEM123 CADM2 CNP PROCA1 MOBP TMEM59L CD59 FKBP8 ZFP36L2 PVRL1 HIF3A MEGF10 ETFB NEGR1 DPF3 RPL26 BCAS1 PHPT1 PLD3 TTYH2 HDDC2 PCSK5 ZFP36 PPP1CB ABCA8 APP GRINA VWA1 SNAP25 ACTB IGFBP7 RANBP1 UQCRQ MYO10 RNASE1 C7ORF50 PCDHA4 ANLN COA4 SUMO1 RPS3A MT-ATP6 CLDN11 ANGPTL4 EDNRB RP11-133L19.3 MTUS1 KCNK1 APOE HSP90AB1 CHRDL1 HTRA1 RAB6B INSIG1 ZFHX4 MORF4L1 APOC1 GOT2 ADSS KCNJ10 RHBDD2 CAMK2G CCT5 TMSB4X RHOB C10ORF10 COL6A1 PPA1 PAQR8 SLC25A4 MRAS NDUFS5 SYT17 QDPR DNAJB6 LYNX1 RTN3 CPNE2 TOMM7 MRPL55 MGST1 YAP1 UQCRB PRDX1 CFI STMND1 CKB RPS15 TM2D3 CAMK4 ARL6IP1 ERMN BRK1 CARNS1 PAPLN SFRP1 SERINC3 AES RPL36A ATP6V0C RP11-20I23.1 RPL17 RPL17-C18ORF32 HNRNPA1P40\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "mixed glial cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 TF ZBTB20 SLC1A2 PTGDS CLU MBP MT-ND4 MT-ND2 SPP1 GFAP NFIA MT-ND3 PPAP2B SPARCL1 GPR56 RPS6 TRIM47 MT3 MT-CO2 AQP4 CD63 SLC1A3 QKI FGFR3 RPL41 MTRNR2L1 SERPINE2 MOBP MRVI1 SLC14A1 FTH1 MTRNR2L12 HNRNPA1P40 PTMA DNER WBP2 SEPT4 PLOD2 AGT CAPZA2 TUBA1A ARL8B VDAC2 TSC22D4 PTPRZ1 RPS15 SIRPA CPE MYO10 FSCN1 TMEM88B PRNP GABRG1 CHI3L1 HSP90AA1 OR6D1P CLTC ATP1B2 HIF3A COTL1 ADARB2 MT-CO3 NDUFB7 PRELID1 ZFHX4 C1S PSAP FTL ARFGAP2 TPT1 PRUNE2 BMPR1B FGF2 CYC1 NKX6-2 ARHGAP35 COX6C ETNPPL SALL1 PLEKHF1 PI4KA PDGFRB UQCR10 PIK3R1 SYNGR1 RPL38 RAB31 EIF1AX MAPRE2 ERBB4 CYBRD1 CLMN SEPP1 GLIS3 UQCRB QDPR CRYAB GPR98 SLC39A12 ALDOC MT2A ELMO1 C10ORF90 PON2 SOX6 NDRG2 RHOA MTRNR2L8 TERF2IP PTPRN VDAC3 CFL1 METTL7A HHATL IDS RPL12 CDKN2D CALM1 ENSA SMAP2 OLIG1 COPG1 COL6A1 ITGB4 NOP10 GPRC5B TMA7 RP11-111M22.2 ALDH1L1 CADM2 CST3 SNAP25 COX4I1 ID2 PIP4K2A CNTN1 MYL12B OAZ1 RTN4 ATP9A APLP1 SLC25A4 ITGA6 MAGEH1 TNFRSF11B CNP GLUL ERBB3 CREB5 RPL21 RPL13A NGRN MTRNR2L6 SYTL2 RAB3B GTF2H2C_2 KLC1 NR1I3 RPL18A CFH TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "mixed glial cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SLC1A3 SLC1A2 GLUL GPR98 COL5A3 ATP1B2 NFIA QKI CLU ITM2B ATP5E FTL PPP2R2B GPM6A HEPACAM PRDM16 MT3 ERBB4 PLTP NDRG2 FTH1 BCAP31 HPSE2 MGST3 GNB1 MT-ND5 PIEZO2 HHIP EPHX2 DNAJB9 RPL21 TLN2 SEMA3B QDPR APP PTPRS ARPP19 KIF1A PPP1R14A PSAP PTPRZ1 SARAF IMPA2 ELAVL4 RPL13A MT-ND2 GOLIM4 ASPA GRAMD3 CLMN CCDC152 HMGCR CPE ATP5A1 MAP4 HINT1 MT-CO1 STMN4 MEGF10 TF APOE SLC14A1 RP11-631M6.3 VAMP2 SLC24A2 MDH2 ATP5C1 TBCB CADM2 S100B PMP2 SEPP1 MTUS1 TLR4 RAPGEF5 LPAR4 AGT GPX4 RPS4X UBC KIF21A MYRF MTPN ALCAM MOBP PTGDS ALDH5A1 RPL13 SYT11 GPCPD1 ACSS1 PAQR8 CSRP1 OLIG1 ERMN CST3 CXCL14 TUBA1B HTRA1 CHN1 ATP13A4 HIF3A METTL7A MT1E MYO10 MFGE8 SRP14 KIAA1755 C6ORF1 GDE1 SOX9 GRIN2C SLC39A12 PKM RHOJ CKB CTSD SLC30A3 TBC1D15 EPHB6 KLC1 SERPINE2 PLEKHD1 ZNF385D ESCO2 SYTL2 RAB3B AC244489.1 DNAJC21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "mixed glial cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SLC1A3 SLC1A2 NFIA CLU GPR98 OR6D1P MT-CO2 MBP MT-CO1 TBC1D15 DYNLL2 MT-CYB DNAJB6 LMO3 ATP1A2 ALDH1L1 ANGPTL4 STON2 TF SYTL2 RAB3B ZNF385D ERBB3 MT-ND4L CTSD SEMA3D UQCR10 PLEKHG3 NR1I3 MT-ND1 CLPTM1 GFAP CNTNAP3 TMEM230 RPS5 TKT PMP2 MT1E TMEM63A COL5A3 KCNA2 RPL12 EMX2 GLUL ITM2C FAM149B1 GRM3 RPL36A SPARCL1 SLC14A1 BCL6 AZGP1 SYT11 PTGDS CSRP1 CHN1 CKB SYPL1 MT-ND4 PREX2 NDUFAF3 SNAP25 MT2A FAM107B TCEAL7 ART4 UBC NDP PSMD12 MT1G CTNND2 CADM2 ZFP36 WLS SH3BGRL2 PIP4K2A SCD5 NAPB TIMP3 DPYSL2 NDRG2 OST4 SUMO1 MTUS1 ATP1B2 TTYH2 CLDN11 PAX6 TOLLIP SERPINE2 LRP1B ATP5I AGT ANXA4 THOC7 RPS15 HTRA1 GPM6A HGF PDE1C POLR2K KIF1A SEPP1 ADAM33 GJA1 STXBP1 GRINA HSD17B14 MT-ND2 PEA15 AIF1L TUBA1A TRIM59 ZNF365 ENO1 TBCB ESCO2 B2M SERF2 RPL17 RPL17-C18ORF32 IDS PCDHGA5 PCDHGA6 PCDHGA10\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "mixed glial cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 SLC1A3 MBP TMEM144 APP SLC1A2 PDE1C SCD5 APLP1 ZBTB20 MT-ATP6 PTGDS TF SYTL2 RAB3B NFIA SPP1 DPYSL2 CLU PSAP MTRNR2L12 FAIM2 PTMA GJA1 EDIL3 GFAP ANGPTL4 MOBP ATP2B4 LIMK1 RPL8 TMSB4X TUBA1A DNM3 ENO1 RPS6 ACTG1 GNAQ CTSD UBA1 QDPR FOLH1 ZBTB18 SERINC1 ABCA8 CDH19 SPOCK3 CNP SEPW1 CLPTM1 RPL37A TMEM88B GPR98 TSC22D4 ENPP2 RAB40B GPRC5B SLC14A1 BCL6 CLDND1 KIF1A RP11-597D13.7 TERF2IP TBC1D15 CFH NR1I3 POLR2M SNAP91 ITM2C TCEB2 ATP1B1 CD9 AC139103.1 APBB1 IFITM3 MTATP6P1 WLS FKBP4 TPT1 MTRNR2L1 RTN3 PPAP2B METTL7A ITGB4 PREX2 THBS4 PDLIM5 INHBB GRAMD3 IDI1 PCDHGA5 AEBP1 C10ORF54 CD99 ATHL1 LAP3 MT3 NDRG2 PTPRZ1 HSPB1 GNG12 MT-CO2 MLF2 ZCCHC24 OLIG1 CBX6 QKI FGF2 INSIG1 SERINC3 SNAP25 MT-CO3 CHN1 HES1 RPS15 CNTROB UBC LGALS1 DDAH1 EFEMP1 HHIP ERBB4 HIF3A ALCAM TOMM7 SELM MTRNR2L8 RTN4 RPS28 FOS BSG RPL13 MTRNR2L6 FTH1 OCIAD1 NDUFB3 APOD RPL35 COX5B ST18 TTYH2 MYRF HEPH MT-ND3 ELMO1 TMEM164 RELN ATP1B2 RANBP3L STMN1 ASPA RPS27A PHPT1 PEBP1 ID2 HOPX HTRA1 OAZ1 RGCC ZNF365 NDUFB7 MRPL33 RHOA RGS12 NTNG2 ARHGAP29 CRIM1 KCNJ10 PPP1R14A RPL12 SCD PIP4K2A SLC31A2 GLUL TMTC4 EPS15 OPALIN PFN2 HSP90AA1 TMOD2 TLR4 CALM2 ZNF385D\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "mixed glial cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MT-CO1 MT-CO2 MTRNR2L1 MTRNR2L12 MT-ND2 MTRNR2L8 MT-ATP6 MT-ND4 MBP MT-CYB MTRNR2L6 MTATP6P1 PLP1 MT-ND3 MPPED1 SYT1 PIK3R1 SNAP25 PRNP MT-ND1 GPM6A MT-ND5 TSPYL1 CALM1 SSBP3 TMSB4X EPS15 PTGDS SPP1 SLC12A5 MAGED1 SLC24A2 FXYD6 DLX1 UBE2QL1 SNRPN CNP TMEM151A WASF1 CALM3 IQSEC1 VSTM2L GRIK1 NAT8L PRKACB PTMA RTN4 CTSD ST18 MAP1B QKI ACTG1 SEPP1 ELAVL2 ATP1B1 HHATL RPL41 LAMTOR5 HNRNPA1P40 RAB3B TBC1D15 SARAF PRUNE2 NDRG2 RP11-111M22.2 ITM2C SST SERPINI1 HSP90AA1 CLPTM1 ATP1A1 SLC6A1 STMN4 APOD DNER ATXN10 FTH1 QDPR LANCL1 BCAT1 MFN2 SPOCK1 PPP2R1A HINT1 CDH7 COX7C PCSK1N GPX3 APLP1 HRH3 APBB1 FAIM2 SCD RPS27A LYSMD2 GHITM CALM2 NDUFB2 PPP1R14A MORF4L1 AP2B1 CSDE1 TMEM144 CADM2 EID1 MAL FAT3 RAB3IP PKM PPP2CA EFR3A PCDH19 ITM2B GAP43 OAZ1 NRGN NPTN UBE2N RGCC EDIL3 MAF PNMA2 PTPRS ARL6IP1 HSP90AB1 BEX2 ZFAND5 ATP9A NAP1L2 ARL4C MAG NAPA NR1I3 B2M IDS SKP1 ZNF385D TUBD1 MTND2P28 MYRF NDUFC2 PRKCG PCP4L1 ARF1 NELL1 ARHGDIA PLCD1 KCNAB2 NDFIP1 UROS HES4 MZT2B TUBB4A CLTC GSK3A CPLX1 NTNG2 DCTN1 RPL38 MEGF10 SUCLA2 NGEF JUND MYL6B NGFRAP1 ITGA6 DEXI CFL1 UBL4A KCNA2 COQ10B GUK1 ITFG1 PNMAL1 EIF4A2 KIF21A CNDP1 EPS8 TPPP NSF TCEB2 NDN MSMO1 GABARAPL1 CPLX2 S100A6 SPRYD3 SYPL1 YWHAQ SPARCL1 RAP1GAP2 RABAC1 CX3CL1 RPL37A GAD1 ATP6V1B2 ASPA CYFIP2 SLC6A17 RPS6 VSNL1 ERBB3 YJEFN3 DPYSL2 MAPK1 USMG5 SYNPR STMN3 CD9 DKK3 SOX11 STXBP1 ARL2BP HCN1 BSN SERINC1 NGRN OXR1 RAB40B MAP2K1 COX7A2L PFKP OLIG2 CLDND1 SEZ6L2 GAPDH TUBA1B NPTX1 ATP6V1E1 PLEKHG1 PGAM1 RFC3 ARF3 SYT11 GRIN3A NCALD NRCAM GLIPR1 PIEZO2 CDK14 KIAA1045 NAP1L3 LIN7B SEPW1 PDE1C MARCKSL1 DCAF12L2 PEBP1 RPL11 NXPH2 AP3S1 NEUROD6 FAM84B PREPL WARS PI4KA FTL DLC1 C19ORF10 ZCCHC24 THOC7 TTYH2 ARL1 AK5 SRP9 RHOB GMFB PPP1R36 LIMK1 TRHDE YWHAG LDHB SYN2 COL6A1 MFSD6 CORO2B KIF1A DYNLL2 FKBP1A RPS28 RPL10A UBC PHYHIP SYNJ1 UBA52 EPB41L3 EPDR1 ATP5F1 CLSTN1 MAGEH1 NDUFV1 TERF2IP BCAS1 SLC17A7 YWHAB ARFGAP2 GNB1 ARHGDIG COL4A5 RAMP1 ANAPC13 WBP2 RPL15 BSG RTN1 DMTN FKBP1B THSD7A NDUFA4 KIAA1755 VWA1 PPP3R1 RPL13 OAT MOBP RPL31 FAM163B GUCY1B3 SSPN CHL1 COX6A1 TBCA LGI3 TMEM63A RAB3C ZNF385A BAI2 GPR37L1 RAB6A FOLH1 ALK JAKMIP1 NAA38 C1QL1 ATP5B RPL26 CSRP1 OPALIN PGRMC1 CKB PPP3CB MAP4 SYN1 TOMM20 ARHGAP35 SUB1 MPL PTCHD4 MTND1P23 CTBP1 ATP2B2 ENSA RPL35 SPTBN1 TUBA4A COPG1 ALCAM TRIM37 PAFAH1B2 IPCEF1 MAP1A ATP6V1F RTN3 DHCR24 NDRG3 MYL6 CARNS1 GRINA LINC01296 ATP2A2 CMTM5 RGS12 UBA1 CNIH3 TOMM7 C2ORF47 CFL2 TIMP2 ATP6V1A BTBD11 ALDOC ISCU PPIA YAE1D1 HTRA1 KLC1 RPH3A NRIP3 IGF1 D4S234E ATP1A3 PRKCB RPS5 UBE2D2 EIF4G2 ATP6V0B CYP27A1 APP CADM3 PTGES3 CHN1 ATP6V1G2 EPHB6 RNASEK-C17ORF49 RPL3 PCDHA4 PCDHAC1 PCDHA10 PCDHA9\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "mixed glial cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 PTGDS MBP MT-ATP6 THY1 TF PREPL TMSB4X ELAVL2 SYT1 PRNP SEPP1 SRP9 COX7C HNRNPH2 CDH13 SH3GL2 CAB39 OST4 KAL1 ISCA1 SPP1 PIP5K1B UBB CAMKK2 ATP1B1 ATP6V0E2 CCK PON2 USP5 CMTM5 CALM2 SKP1 ERBB4 EIF4G2 MARCKSL1 CLU GPM6A RELL2 BAI2 FAM3C PROX1 RPS10 CNP D4S234E ATP5I RPS6 RPL13A TAC1 CTNNB1 FAIM2 SEMA3B PTPRN UQCR11 RTN3 FAM219A C2ORF71 GRM8 PPP1R14A PRKCE NAPB RPL8 TSPAN7 RHOA BIRC5 HDLBP MAP2K1 TTYH2 ENO2 CFH SNAP25 ACTR1A PRUNE2 TMEM235 NEK7 PRR18 MTCH1 KCNMB4 RAB3A MLF2 MT-CO1 APOD CLDN11 MTRNR2L12 CHGB RAB3B PHYHIP PHYHIPL NUP37 MED31 PGAM1 PGM2L1 CLDND1 SCD ACOT7 EIF1 NDUFS5 KCNJ10 TCEAL5 RPL32 NAP1L5 ACTG1 ATP5J FAM174A THBS2 RBX1 STMN2 YAF2 OPA1 ASPA NDUFB3 CRIM1 VAMP2 SHC4 TMEM14A STMN4 CREB5 RP11-597D13.7 AZIN1 GABRA1 ZNF385D NDUFB7 PADI2 TMEM35 CLTA RPS4X ARF5 DYNLRB1 TUBB3 RPL36A MIF PLEKHD1 HNRNPA1P40 PCDHGA6 TBC1D15 DNAJC21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "mixed glial cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ZNF385D MT-ND2 PLP1 MT-CYB MT-CO3 SERF2 MBP SYT1 MT2A MT3 PTGDS HSP90AB1 MT-CO1 ATP1A1 QDPR PSAP RPS15 MT-ND3 TF MT-ND1 NDUFA12 ATP1B1 CRYAB RPL3 RTN4 MT-ATP6 NFIA RPS12 FTL SCD5 DPYSL2 RPL32 RPS6 PLCB1 CLU ENPP2 RAPGEF5 MAP1B SYTL2 UBL5 RPL31 MOBP RPS27A RAB3B CNP HSP90AA1 GRM3 MT-ND4 RPL37A COX7C MT-CO2 MTCH1 OLIG1 SPOCK1 RPL38 MYRF MYO10 RPL26 CD9 STRAP PPP2R2B CSRP1 OAZ1 DNAJA1 OPALIN PPP5D1 HSPA4 UBE2D2 KCNMB4 CCDC124 EPS8 TCEB2 ALDOC HMP19 ATP5J KIF3C RPL13A NGFRAP1 SLC17A7 JUND MAG TRIM47 APOD DKK3 HDLBP SERINC3 BCAS1 COX4I1 WDR47 SOX9 RPL41 KIF21A ITM2B IGFBP5 MGST1 RPL15 STMN1 SYN1 SLC1A3 SULT4A1 SERINC1 ZFP36L1 MT1F FXYD6 HAMP SV2B GAPDH CCK NDUFS5 ATP5H VAMP2 APOLD1 GPR56 CDK14 EIF1B POLR2K SLC35B1 PODXL CPE C4ORF3 PTMA RPL23A BSG KCTD12 COL21A1 DCTN1 POLR2I SNRPE GFAP FIGN LMO4 MAP1A FAM107B NMNAT2 LIMK1 MTRNR2L12 BSN THYN1 CHN1 RP11-175B9.2 SEMA3C TBCA KIF1A H2AFZ CBX6 C18ORF32 PMP2 COX6C ASPA MT1X YWHAQ BAI2 CTSD TTYH2 PPP3CA KCNK1 PADI2 TLE4 FSTL5 NDUFA4 RGS12 FOS PAX8 MRPL33 UQCR10 RPL35 RIT2 SKP1 ARX TSC22D4 ATP6V1A MORF4L1 NDUFC1 PKM UQCR11 ATP5G2 MRPL55 MAL EIF4G2 RTN3 HSPE1 TMSB4X NDUFAF3 RAB3IP CHCHD2 QKI MT1G MGST3 TUBA1A WBP2 TPT1 RPS4X DRAP1 BEX1 UHMK1 MRPL51 CREB5 ZBTB20 CYC1 TMSB10 HINT1 ZFAND5 DNER GAP43 COL20A1 ASAP1 IQCK SSBP3 GRAMD3 CALM1 ITM2C PTK2B C1QA FRMD4B HSPA8 PPP1R14A CLDND1 GABRA1 COL5A3 CALM2 CRIM1 PTPRS RPL11 SPP1 DDN EGR1 ALCAM FTH1 PLEKHD1 RPL17-C18ORF32 GHITM MTFP1 GJA1 RP11-219A15.1 RPL17 TUBB GTF2H2C_2 TBC1D15 DNAJC21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "mixed glial cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 MBP COX7C PSAP MT2A CRYAB CKB MOBP UQCR11 RAB3B APLP1 TUBA1B BCAS1 SERF2 MT-CO3 SLC24A2 MT-CO2 SEZ6L2 RPL8 ERMN RP11-597D13.7 QKI TF FTL SYTL2 SLC1A3 TBC1D15 TOMM22 SLC31A2 NBL1 MT1F FBXO2 RPL11 OLR1 SCD5 ZCCHC17 TPT1 SCD RPL12 NOTCH1 COL4A5 GPRC5B ATP5E FAM107B DCTN1 SRP14 RPL15 KCNJ10 CCK SPP1 ST18 SOD1 GFAP PTMA PFKP LRP2 ATP1B1 RPS27A CCDC124 PDE9A KCNMB4 CMAHP RPL32 NDUFC2 APBB1 MDH2 SERINC3 ANLN EIF1 TMSB10 CLDN11 CSDE1 UBC PEBP1 NCEH1 EPAS1 CPNE2 GPIHBP1 AP3S1 MT-ND2 TSPAN7 NOS1 PTGDS RAB40B DNER CLIC4 RANBP3L ZBTB18 PAFAH1B2 RPL23A LAMTOR1 TMSB4X TCEAL2 PALD1 C1ORF194 PGK1 SERPINI2 PPP1R14A CPE TMA7 PRDX1 MAP1B SUB1 DYNLRB1 BMPR1B PRKACB MAP1A EIF4A2 SERINC1 IMMP1L CD59 RPS6 SPARCL1 TUBA1A RPS15 GPX4 ABCA8 SLC22A17 DPYSL2 PRDM16 ACTR6 ARPP19 MT1X NRCAM MTRNR2L1 UBE2M TMEM63A ARL8A ADCY10P1 NDUFB2 HSP90AA1 ETV5 DISC1 MT-CO1 TMEM144 FTH1 HSPA2 SARAF SLC6A1 SPCS2 NDUFS6 RPL21 RPL7 OR6D1P RPL18A CFH TRIM59 DNAJC21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "mixed glial cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RAB3B PTGDS MT-ND3 MT-CO2 SNAP25 MT-CO1 GFAP TF NFIA SLC1A2 PLP1 MT-ND4 GPR98 QKI MTRNR2L12 ZBTB20 MT-CO3 CLU MT-ATP6 DPYSL2 SLC1A3 MT-CYB FGFR3 MT-ND2 GLUL MT3 GPRC5B HIF3A GPR56 HSP90AB1 PRUNE2 AEBP1 CHN1 MT-ND1 NEGR1 ACTB TMEM59L GPM6A RP11-111M22.2 NR1I3 PRDM16 MTRNR2L1 SLC14A1 KIF19 PHYHIPL ZFP36L1 APOE ATP5E COL5A3 PON2 CALM1 IGFBP7 ATP5I MTCH1 UQCR10 NDUFA5 NDUFB8 HGF PAQR8 ALDOC GPIHBP1 NDRG2 SYT1 RASL12 RHEB FOLH1 TXNIP KCNA1 ATP9A SELENBP1 TTYH2 S100A13 PGK1 PTMA SKP1 RPS28 ITM2C ZFP36L2 AQP4 CST3 PPAP2B SOX9 LCAT ESCO2 DNM3 TCEB2 F3 TPPP METTL7A EZR RPL23A XAF1 RAB4A BCL6 CMPK1 SLC7A8 EDIL3 CD59 PEA15 RANBP3L MBP NDUFB3 SKAP2 NECAB1 MT2A RPL13A SPOCK3 ID2 APOLD1 ARHGAP24 FTH1 MED10 KIF21A SNRPE CAMK2G C1S SLCO1C1 INHBB FABP7 NRCAM PIN1 DSTN RPL13 RNF11 ARHGAP29 CALM2 SNCAIP MOBP ZIC2 BMPR1B GAPDH SUCLA2 HDDC2 VWA1 CLTC DYNLL1 ANGPT2 PRDX1 PET100 SOX2 MSMO1 RPL38 ASAP2 ATP6V0B DDAH1 SSBP3 TMEM144 GPNMB CX3CL1 IDS MT1M VEGFA PRDX5 CD44 MTRNR2L6 DOCK10 CSRP1 BAALC CXXC4 TOX RGS12 PLOD2 FAT3 RPL11 CALM3 HIGD1A NCAM2 PRKACB UBA52 CARNS1 SUMO2 CTNND2 MANBAL MRVI1 PLEKHH2 TEX2 CISD1 TUBD1 CDK14 RAB7A YJEFN3 ATP6AP2 MGST1 C5ORF63 HDAC1 ITPR2 TLE4 STOX1 IFI16 SDC4 HSPE1 ZCCHC24 PMP2 USMG5 RND3 HAPLN4 NAT8L TMLHE ABCA8 PEBP1 FAT1 ENO2 SCOC SCD NCDN DPP6 SSPN THSD7A FTL ZBTB18 PTPRZ1 SLC9A6 LINC00086 SPARCL1 CFL2 CDC37 OXCT1 REEP5 ATP6V0E2 ARHGAP42 HTRA1 INCA1 COL6A1 NAPB RPS6 EGFR MTRNR2L8 PGM2L1 MTATP6P1 SARAF GPR37L1 TGOLN2 NIPA1 KCNK1 NDUFA13 KLHL5 PRNP UQCRB LYPD1 GSTO1 RPL21 GUK1 GSTP1 SLC6A1 BNIP3 ATP5F1 PTN ATP1A2 CDK17 UBE2D2 PHKG1 TSC22D4 GJA1 RTN3 SEPT4 CLDN11 GRIN1 PKM MAP1LC3B PDLIM5 DGKG RPL12 TMEM63A RP11-597D13.7 CAPZB KCNAB2 AGT NPTX1 TESPA1 ID4 SRP14 HEPACAM MAL GRIN2A HSPB1 SYN1 RGCC EIF1B RORB SYT5 WLS SEPP1 CLSTN1 COX6A1 CLMN IQCK CLDND1 UBA1 MRPL20 NHP2 ELMO1 NPM1P30 STMN1 GNAQ RPS4X QDPR NDUFA4 RPS12 EVI2A EGFL7 LCN12 RP11-20I23.1 ATP1B1 EPHA6 B2M EPHB6 RPL41 SERF2 RPS10 ATP6V0C GTF2H2C_2 RPS26 SYTL2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "mixed glial cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 SCD SLC1A3 MT2A TF MBP MT-ND4 SYTL2 ABCA8 MT-CO2 GLUL SCD5 ATP1A2 GPR98 MRAS ZBTB20 MT-CO1 PTGDS THY1 NFIA MOBP RAB3B RNASE1 TMEM235 EDIL3 MT1M SPATA13 PGAM1 MT-CO3 AQP4 C11ORF65 C16ORF13 RP11-664H7.2 METTL7A RTN3 NKAIN4 PPP3CA NECAB1 NDUFB1 FRMD4B PLCB1 FTH1 BMPR1B CLMN RP11-111M22.2 YWHAB COL5A3 THSD7A SH3BGRL3 BIRC5 CAMK2G RRM2B RHOB C1QBP SEMA3B EIF1 MT-ND5 STMN1 CIAPIN1 F3 UBC ASPA MT-ND1 PRR18 GJA1 ERBB3 TRIL SLC14A1 MT3 BEX2 ZBTB39 APLP1 SGCD ATP1A3 ATP6V0E2 CSRP1 PGK1 MLF2 KCNA2 JUND TMEM144 CNP CALM1 PPIA CALM2 SLC1A2 QKI DOCK10 ATP1A1 CADM2 CKB ARL6IP1 RTN4 CSDE1 NDRG2 HMGCS1 MT-ND3 PRNP RNA5-8SP6 FGFR3 MT-ND2 CYP27A1 GDI1 RAD23B MT1E CFL2 RP11-219A15.1 ZNF385D\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "mixed glial cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 FTL HSP90AB1 MBP MT-CO2 MT-ND2 MT-CYB MT-ND3 MT3 HSP90AA1 MT2A MAP1B RBX1 NDUFA13 CRYAB RPS6 CLU MOBP DYNLL1 DNAJC21 TBC1D15 EIF4A2 QDPR FA2H SERF2 MT-CO3 RPL41 DNM3 SPP1 RPL35 SLC24A2 UBB RPS27A RPL32 TMSB4X RPL11 MAPK1 OLFM1 RPL37A EDF1 ERBB3 TUBA4A RPL23A PEBP1 GAPDH ARL6IP1 PTGDS MT-ATP6 RPL31 SLC1A3 RPL38 GFAP VAMP2 ALCAM CNP EDIL3 STXBP1 CETN2 OPALIN GPM6A RPL13A RAB3B SYTL2 ZNF385D TF LRP2 DPYSL2 ATP1A2 BSG OLIG1 MT1G PPP3CA BAG4 COX6A1 APOL6 NDUFA1 ATP2A2 CYP2J2 NDUFB3 LAMTOR5 COX4I1 FXYD6 HSPA4 TKT BCKDK SALL1 CLDN11 UQCRQ SLC12A5 KCNAB2 ZIC2 WLS RCAN2 PHPT1 PSMB7 GAP43 SNCA TUBA1A GRAMD3 TAGLN2 PTPRS HIST1H2AC PIEZO2 MUM1L1 BASP1 RPS2 TOMM7 TPT1 SEPW1 SYT1 SKP1 MGST3 C2ORF74 BOC MFSD6 UQCR10 RP11-597D13.7 APLP1 PCBP1 TMEM144 NDUFB8 ANLN CDC37 GHITM HHATL ATP5I COX7A2 RPS15 TIMP3 HIGD1B ATP5J2 ACTR10 CHCHD2 FTH1 BSCL2 CPE POLR2J GPRC5B PEA15 VDAC2 UQCRB DOCK10 LDB2 SLC9A6 BEX1 BCL6 SPOCK3 H2AFZ HPN CTNNB1 JOSD2 ATP6V0D1 ITM2A MYEOV2 C9ORF16 NAPB SEPT4 SUMO1 ZFHX4 APOD TIMP2 S100A10 CKB RPL36A GRIN2C SNRPE TBCB EPHX2 APP NCALD CALM1 RPL13 TPI1 ENC1 NARS THBS4 RPL26 HOMER1 TUBB4A NDUFC2 S100A13 MDH2 PEX5L PFDN4 ATP5G1 RAB6A DCTN1 POLR2L CYP27A1 CADM2 MRFAP1 UQCR11 NDUFB1 TMEM63A TMSB10 SH3RF1 TSPYL1 MGST1 SPTBN1 PDLIM5 CYCS RPS5 SCN3B FAM89A GNAQ ZBTB20 NDFIP1 GLUL RAB9A SARAF STON2 SRP14 FAM107B MAP2K4 PTMA SIGIRR SEMA3B ENPP2 RPL17-C18ORF32 DNAJA1 SEPP1 CD59 NAPA ATP6V1G1 C19ORF10 PRKCB CLSTN2 GDE1 SCD5 RPL17 PITHD1 CYP26B1 QKI COA4 TPGS2 MYO10 YWHAB SLC35B1 NDUFA4 NXPH2 GABARAPL2 SNRPN RPS10 IFI27 ATP1A1 RPL7 B2M ISCA1 MIF RPS28 AC244489.1 RPL21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "mixed glial cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 MTRNR2L12 SNAP25 MT-CO3 SCD5 RAB3B QKI MT-ATP6 MT-ND2 NRGN PTGDS MTRNR2L8 LMO4 SERF2 MTRNR2L1 SEPW1 MBP MT-ND1 SCG2 DPYSL2 MT-CO2 SYT1 MT-ND3 TBC1D15 TMEM200C STXBP1 CRYAB SLC30A3 HTRA1 NDFIP1 TRHDE NECAB1 RP11-111M22.2 SCD PSMC1 RPL35 HSPA2 APP TTYH2 DYNLL2 MT-CYB MT-CO1 PGRMC1 PRKCB YWHAG RTN3 COX6C TUBA1A EDIL3 NREP SPARCL1 ITM2B ZNF385D BIRC5 CERS6 SRP14 WDR47 ZMAT2 GDI1 LDB2 KLHL5 CACNA2D2 TMTC4 CLEC14A ATP6AP1 ANXA7 NDUFA13 TSPYL4 MAP1B C1ORF115 FAM3C SEMA5A VDAC3 APOD PLEKHG1 GRIN2A VAMP2 PHYHIP LMBRD2 ARF3 PVRL1 C7ORF50 PRNP PPIA FAM198B CD63 TMEM144 MORF4L2 MAP1LC3A NDRG3 SEMA3B PEX5L TSPYL1 DNAJC6 SCN3B NPTXR QDPR OLIG1 FAM69C RPL38 LAMTOR5 CA2 PIK3R1 ATP1B2 TUBA1B SCN1A TMEM160 GRAMD3 NUDT4 ENSA CLSTN1 TMEM35 KIF21A PREPL TMEM59L RPL37A ROBO2 EIF4A2 CAMKK2 MARCKSL1 SERPINE2 PPP2R2C PGAM1 MRAS TUBB2A OLFM1 COX4I1 TBCB PSD3 RPL26 SCAND1 NUAK1 PIN1 CLDN11 PDE1C MAPRE2 TSHZ2 FAM127A RPL23A ATG101 CALM1 NFE2L1 SERINC3 CYFIP2 YBX3 FTL SYT11 ZCCHC24 UBA52 WBSCR17 COPRS KLC1 CALM2 PNMAL1 OST4 MAP1A SLC39A10 ATP1B1 HS6ST3 FOS DYNC1I1 HSPA8 SYNJ1 ELAVL2 CREG2 CTBP1 MMP24-AS1 FRMD4B RPS28 MAST3 CD9 TXNIP ZFHX4 ACTB PPP1CB MME CAP2 MZT2B CNDP1 GNB1 CSDE1 CORO2B CPNE2 PEBP1 ETFB ATP6V1B2 CRIP2 ARL6IP1 LPPR4 CHN1 C9ORF16 NDP FAM84A JUND HHIP RP11-195F19.5 TGOLN2 TSPAN7 SUMO2 BEX4 TTN PROX1 VAPB LRMP TBR1 SNRPN NEFL PTMA FAM163B RARRES3 GRIN1 PRKAR1B VGF GLUL SCAMP5 REEP2 TCEAL2 PKM MT-ND4 FAM107B UQCRFS1 ATRN NDUFB7 RORB TPPP TMEM258 BCAS1 IDS ATP1A1 KCNJ10 RAB40B HCN2 OR6D1P RTN4 TMEM230 THBS2 RSL24D1 MARCKS SEZ6L SYT17 RPL21 PPDPF CLPTM1 DCLK1 ITGA11 CLDND1 ZBTB20 CALM3 SPSB2 CARNS1 DNAJB6 HNRNPH2 ARL8B TMCC3 TMA7 PLEKHG3 PLEKHD1 RPL17-C18ORF32 C18ORF32 HNRNPA1P40 PTCHD4 MIF\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "mixed glial cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 MBP ZBTB20 MT-ND2 RPS27A MT-CO3 HSP90AA1 FTL PSAP PEBP1 MAP1A RPS12 CLU NDUFB7 KLC1 MT2A SYT1 CCK TGOLN2 RPL26 NDUFB4 TPT1 MOBP TMSB4X ATP6V1A QKI CHN1 GHITM MT1F DNER ZCCHC24 PTN CKB COL6A1 CLDN11 IQCK PRDM1 RHOB PRIM1 ALDH1L1 CREB5 TRIM47 TMA7 NDUFB8 UBB SLC1A3 PIEZO2 CADM2 TMSB10 CISD1 VAMP2 ATP9A GRIK1 PLD3 OAZ1 ATP6V1F TMEM144 HDDC2 ERBB3 TSC22D4 CALM3 RTN4 SCD PSMB7 RPS2 PNMAL2 TMEM63A FAM189A2 ATP5I RHEB MT-CO1 ATP5E OPALIN BEX4 SLC38A1 SOD1 CRYAB VDAC1 GAP43 RAPGEF5 MZT2B ITPR2 RAB40B FTH1 FAIM2 GPRC5B KCNMB4 NPAS3 NDFIP1 MAP7D1 TPI1 GDE1 THOC7 B2M TUBA1A ALCAM MT-ND4L PRKCB RPL8 SNAP25 LAMP5 ELMO1 ATP6V0E2 RP11-597D13.7 DEXI SCN1A VDAC3 RPL11 STMN2 DNM3 SEPW1 KCNJ10 TNS1 CALM1 EIF1B DSTN NPTX1 SLC1A2 CD63 JOSD2 EDIL3 GPX4 TTYH2 SEC61G GRM3 GNAQ LRP2 HDAC1 AHNAK CNTNAP5 CNTNAP3 SLC9A3R1 SELENBP1 PIP4K2A LINGO1 MT-CO2 DYNC1I1 YWHAZ UQCRH NDUFS6 SRP14 PDGFRB FKBP1A CTNNA2 ARL6IP5 NGFRAP1 RPL13A MT-CYB GNG5 RNF181 MT-ND3 TCEB1 RPS4X MT-ATP6 HGF TLN2 ACTR1A CNP CDH19 APP SLC24A2 ATP1A2 CLMN PRR18 SYTL2 ZNF385D RAB3B SERPINA3 NGRN OR6D1P MTND1P23 TRIM59 MT-ND1 RPL18A ATP6V1G2 HNRNPA1P40 TUBB PLEKHD1 RPL21 GTF2H2C_2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "mixed glial cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MT-CO2 CALM2 MT-CO1 MT-ND2 MT-ATP6 MT-ND4 MT-ND3 MTRNR2L1 HSP90AA1 PLP1 TF ARL6IP5 PEBP1 PRNP ITM2B QDPR APLP1 MT-CYB ACTB TMEM144 PPP1CB SPP1 MOBP PSAP RPL13A RP11-111M22.2 KIF1A PTGDS EIF1 RAB3B SYTL2 LINC00087 SPTBN1 NPTX1 BEX1 MTATP6P1 MTRNR2L12 DOCK10 CHN1 PNMA2 SPOCK1 RTN3 TBC1D7 UTRN NDFIP2 LMO3 NFIA GPX4 PROX1 TPPP PEX5L SPOCK3 MT-ND1 RPL3 PCDHGA6 AP2M1 NEGR1 SYT1 ZBTB20 TIMP2 DNAJC21 TBC1D15 MTRNR2L6 GRM3 THY1 SLITRK6 AP2S1 DYNLL1 RPL31 CXXC4 PPFIBP2 TUBB2A TGOLN2 BAG4 GAP43 TENM1 NAA38 SYN1 NPTN RNF152 KLC1 ATP1A3 MAG HSPA8 DNER ACTG1 OLIG1 DNAJC6 CFL2 MBP TUBA1B CLIP3 RAN SNN SCAMP5 TAGLN3 UBE2D2 SYT11 GLO1 GPCPD1 TMEM123 ATG9B RTN4 SKP1 TMA7 RAB6B TSPYL1 FXYD6 IPCEF1 LMBRD2 TOMM20 STMN3 MGST3 ELAVL2 TUBA4A ZFAND5 LRP2 TTYH2 MAP4 TSPYL4 CBX6 PRUNE2 ZFHX4 BNIP3 PPP1R9B PVRL1 ATP2B4 GNG2 PLCXD2 TOMM7 ZNF343 SNX10 SARAF ATP5G3 CD9 CLDND1 ATP6V1B2 CAPZA2 ADAMTS1 RPL11 MED10 SYNPR HPCA KCNAB1 APOD YWHAG RPS4X ANLN PREPL C1ORF95 RAB27B HEPH CD99L2 PTPRS HS3ST5 CDH8 COPE ZCCHC17 TMEM59L EDIL3 APOLD1 IFI6 SPARCL1 ABHD8 ATP5E RAB2A NUDT21 PCDHGA5 PDK4 SNCA TMOD2 ENSA PGM2L1 BIRC5 NFE2L1 TMSB4X ENO2 PADI2 ZDHHC12 GHITM TP53I11 ADARB2 NKX6-2 MYBL1 CTGF EIF4A2 MORF4L2 RPL12 SMS LMO4 ATP6V0B WFS1 SRP14 CDK5R1 SNCB NDUFA5 AES KIF19 MTND1P23 RAB9A CREB5 PRKACB GDI1 RPL32 PJA2 RAB3C PAK1 VCAN MTG1 NBL1 CAP2 TXNIP RPS3A DMTN CARNS1 RPL37A ADAM23 ALCAM RFK RNF212 ATP6AP1 PLD3 CDK17 BRK1 PCMT1 PCSK5 MORF4L1 PEA15 CYBRD1 APP CLDN11 PGRMC1 WDR47 PPM1A MT-ND4L TLE4 UBE2N MAP1B KIAA1045 IFI16 OCIAD1 ARL6IP1 SERINC3 REEP5 PLCB1 COX6C FGF12 SLC24A2 CRIP2 PRKAR1B GLRA3 C6ORF141 SLC1A3 NGRN HBA2 ALDOA HBA1 GABARAP PSMC1 CNTNAP3 NSF HNRNPA1P40 PLEKHD1 AC244489.1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "mixed glial cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: CLU TF PLP1 ZBTB20 MT-CO2 TMEM144 CRYAB MT-CO1 QDPR RPL32 CALM2 MT-ND4 FTH1 MBP AQP4 MT-CO3 ALCAM PSMA7 DPYSL2 GFAP QKI SPOCK1 TMA7 ZFP36L1 RPL38 LRP2 CSRP1 ANKRD18A MT-ATP6 NFIA PAX6 SYTL2 RAB3B MTUS1 FOLH1 TPPP MT2A MT3 APP MT1E TUBA1A PPP3CA COX17 FTL CD9 HHATL AP2B1 GJA1 TXNIP PADI2 TSC22D4 TPT1 EDIL3 PEBP1 SPP1 SEMA3B PIEZO2 OLFM2 PSMC3 ANGPTL4 CNP BMPR1B SERINC3 SLC1A2 FGFR3 MORF4L2 HSP90AA1 BAALC GPR98 UBC SERF2 FABP5 PRUNE2 STON2 DYNLRB1 PPAPDC1A UQCRC2 DCTN3 PDK4 FSCN1 CLDND1 COX6C PPAP2B SELT PCYT2 CLMN MT-CYB IFITM3 NAT8L RPS4X PREX2 TGOLN2 ZCCHC24 PEX5L GPR37 CAPZA2 MTRNR2L1 RAB11A MAP1A ATP5E RPL21 SYPL1 SYT11 HEPACAM ANXA4 PRKACB ETFB AZGP1 CALM1 APLP1 ATP5G2 CD44 CFL2 ACTB PTGES3 YWHAB MTCH1 SCOC FKBP8 MRPL47 CADM2 TLE4 CPNE2 PGAM1 RPL23A SLC24A2 MRVI1 NDUFAF3 NDRG2 NPTN ATP6V1C1 DNER CPE APOD RPS2 SPTBN1 SLC1A3 CCDC115 RTN1 NR1I3 GSTO1 SLC38A1 MTRNR2L12 RSL24D1 AHNAK CLTC FAM107B KIF1A RAB6A LDOC1 EXTL2 SCD BCL6 YWHAQ APBB1 HIF3A TCEA2 PRDX1 PKM RPS27A ERMN DPY30 SARAF HNRNPA1P40 FIS1 EFEMP1 RPL17-C18ORF32 RPL17 GABARAP BSCL2 TRIM59 AC244489.1 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "mixed glial cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SLC1A2 PLP1 SLC1A3 ZBTB20 PTGDS CLU MT-ND3 CKB ACSS1 VEGFA FTL RP11-111M22.2 GPRC5B GLUL CFH APOE TUBB2B CREB5 MT-CO3 MARCKS HHIP MTCH1 RPL41 PTPRS PPA1 SOX2 SCD5 ATP1B2 HIF3A ITPR2 EIF1AX FA2H OPA1 CST3 AQP4 MTRNR2L12 MT-ATP6 HEPACAM COL9A3 CTDSP1 MTRNR2L8 SOX9 SPOCK1 NRCAM ITM2B TOMM20 FGFR3 TMEM63A MTRNR2L1 SLC25A48 ID4 DNAJC21 CD63 S100B NTNG2 SNCA TMEM144 NDUFC2 RHEB DNM3 RNASE1 PTMA METTL7A ATP13A4 RAB4A ARPP19 VAMP5 MYRF EDF1 CALM1 MAP4 PLEKHG3 MT-ND4 COL5A3 ATP1A2 WIF1 ATP5G2 CD58 SDHAF1 MT-ND4L AURKAIP1 PAQR8 CA8 C1QL2 CHL1 LRP1B SERINC3 MAL NCBP2-AS2 ERMN COL4A5 TCEB2 PIN1 RGS12 SLCO1C1 RNA5-8SP6 TMSB4X BAALC PTN SERF2 QKI JUN ASAP2 TUBA1B CADM2 EID1 TBCB RORB PPP1R14A KLC1 NDUFB4 GRIN2C AC011043.1 PPARGC1A PRDX5 IGFBP7 PCDHB2 INSIG1 SNAP25 SCD RPL12 PFKP PPAP2B OPALIN UQCR10 MAF FAM189A2 UQCRQ FOXO1 GNAQ NFIA SPI1 UBA1 PLTP HTRA1 SYT11 SEPW1 SIRPA WBP2 HSP90AA1 RPL38 CNTN1 NDUFB11 MTX3 RANBP1 PTPRM GDI1 GPM6A FAM111A POMP CALM2 RAB34 SPARCL1 GPR37L1 APLP1 MT-CO1 GPR98 RPS2 PVRL1 ITFG1 ENO2 PIK3R1 RAB3B SYTL2 ZNF385D AC244489.1 RPL26 PTCHD4\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "mixed glial cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MBP SPP1 NFIA PLP1 MT-ND1 GPRC5B RPS15 ALCAM APLP1 SYTL2 TF STMN1 RPL38 TUBB4A CLDND1 PTGDS SLC1A3 QKI GFAP TMSB4X SPARCL1 ABCA8 RTN4 RTN3 RPL13A TERF2IP SH2D6 PADI2 ZBTB20 GLUL RAB3IP SEPW1 RAB40B NAA38 DNAJC21 TBC1D15 PAQR8 APOLD1 DYNLL1 C11ORF65 ASPA SEMA3B S1PR5 MT-ND3 BCL6 MT-ND2 ARPP19 ERBB3 ST18 ITM2B HSP90AA1 QDPR TPPP OCIAD1 TBCB CPNE2 SERINC1 SLC35B1 CTSD COX5B PEBP1 ARHGAP24 COX8A CSRP1 ARL8A RPL8 MT-CO1 C10ORF54 ATP5E CFL2 KIF19 MT-CO3 CD63 CNP MAPK1 NFE2L1 COX7C SERINC3 LAP3 MTRNR2L12 PEX5L PRKACB SEPT4 RANBP3L RPL41 PDE1C SPATA13 RPS6 S100A13 ALKBH7 SUB1 ITM2C APBB1 AGT FTH1 CFL1 GPR37 C10ORF90 UQCRB PRUNE2 OPA1 NDUFB10 TMTC4 ATP1B1 MAP4 EIF1 GPR37L1 UBA1 MYO10 WFS1 GNAQ TMEM144 NDUFA2 VEGFA MT-ND5 DLC1 APOD RP11-597D13.7 SLC24A2 ZFP36L1 ANAPC11 CREB5 CYB5R3 LMO3 MT1X UQCRFS1 TUBA1B MAGEH1 UBA52 TUBA1A EDIL3 CADM2 RPS27A SPOCK3 LRP2 HHIP ACACB ITGB4 RPL39 JUND CLTC MT3 SLC1A2 CDK17 ATP5I ANLN MOBP PMP2 IQCK ESCO2 PSMB3 THY1 RELN ATP1A3 RPL21 AC244489.1 RAB3B\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "mixed glial cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 MT-ND1 TF MT-CO1 CADM2 MT-ND3 MBP ATP1B1 SCD MT-CO3 MTRNR2L12 SCD5 OPALIN APLP1 ZBTB20 MT-ND4 RAB3B GPR37 MT-CYB MT-CO2 TTYH2 HHIP MTRNR2L1 GLUL PIEZO2 CREB5 MT-ATP6 NFIA ITM2B HSP90AA1 FTL PDE1C FAM107B BCAS1 CALM2 MAPRE3 EVI2A HHATL ARPP19 ADARB2 VCAN NKAIN4 RPS28 OCIAD1 MOBP SPOCK3 GNAQ ZNF385D TIMP2 DNER HINT1 PRNP MYEOV2 ALCAM MAL TMEM144 DPYSL2 MGST3 RPL36A CSRP1 TMEM258 RPL37A CRYAB SYPL1 OLFM1 SPCS2 ALDOC TSC22D1 SCG2 SEPT4 RGCC UQCRB RANBP1 RPS19BP1 CD24 WIPF1 CLDND1 MT-ND2 YWHAQ FOS DNAJC6 ST6GALNAC3 SSTR2 HSP90AB1 ERMN MAG LAMTOR1 NUAK1 DOCK10 RAB40B CHL1 SOX21 APP MYRF PEX5L ATP2A2 NDRG3 BIRC5 C7ORF50 HTRA1 EDF1 CDK17 ABCA8 GNB1 CA2 NDUFA1 KLHL5 TUBB4A ATP6V0E2 PCDHGA6 RPS5 EDIL3 CHMP4B FAIM2 CALM1 CLMN CTNNA3 NDUFA13 PROX1 ATP5G2 SLC1A3 RTN4 SH3RF1 ATP5O CD63 PHYHIPL ARHGDIA YWHAB ACTR10 PIP4K2A PTPRS SMOC1 ANLN LRP2 CNDP1 PRUNE2 ZNF536 CLTC GAPDH JUND GOLIM4 GDA ENO1 CHMP5 ZFP36 LAMA4 SEPW1 CD9 TMEM63A SUB1 ATP1B2 TXNIP PCDH17 RPS6 ATP13A4 MTRNR2L6 HDLBP EID1 ADSS TNFRSF11B RELN COX7A2L PRKACB SALL1 PET100 TCEB2 UBC ACTB RPL10A PTGDS MAP1B MT-ND5 HAPLN2 RP11-597D13.7 QKI HSPE1 ITGB4 EIF1 PLS3 LCAT NGFRAP1 OLIG1 CTSD RNF181 RPL21 UBE2N PPP1CB ATP5J RPL13 IDS ALDOA MORF4L1 FTH1 GTF2H2C_2 SNAP25 CFH DNAJC21 TBC1D15 SYTL2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "mixed glial cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: GLUL MT-CO1 SLC1A2 MT-ND4 MT-CO2 PLP1 MT-ND3 MTRNR2L1 FTL SERPINE2 SPARCL1 SLC1A3 ZBTB20 ID4 MTATP6P1 TSPAN4 WFS1 MT-CYB SPP1 FTH1 PXDC1 ITM2C MBP MT-ATP6 CNTN1 SYT11 TF DNAJC21 TBC1D15 ACACB MT3 CYFIP2 RBX1 LHFP NDRG2 FAM219A MTX3 NFIA CNP PPP3CB FAM84B PAQR8 HGF MT1E ADORA2B RPL35 UQCRH GPX3 GPM6A EPS15 YIPF3 CRYAB MT-CO3 MOBP SPCS2 CTSD ARHGAP35 NAT8L OR6D1P CREB5 ABCA8 STON2 C1QA ACSS1 ACTR1A EDIL3 SLC7A10 MRVI1 MT1G PRDX2 TRIL F3 PPTC7 MT2A ARHGAP24 DNAJC6 ZNF385D NRCAM NKX2-2 UBC NKX6-2 NCEH1 SRP14 RPL12 RPS28 RPL31 GRM3 BRICD5 H2AFZ APP QKI FRMD4B COL6A1 MYRF PRDX1 GJB6 TMEM147 NCKAP5 PTMA SH3RF1 COX7C SOD1 ITM2B SPOCK2 RHEB POU3F1 PBXIP1 EIF1 EPS8 PRKACB ACTB CLU MT-ND2 MTRNR2L6 TRIM59 RPL3\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "mixed glial cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 MBP MT-CO2 TMEM144 MT-ATP6 SLC24A2 CADM2 RAB3B MT-CO3 SEPP1 MORF4L1 SCD MT-ND3 FSTL5 SPP1 METTL7A FTH1 ATP1B1 TUBA1A AIF1L PTMA SNAP25 GFAP SERINC1 TMEM88B MTUS1 CLMN RAPGEF5 MTRNR2L12 KIF1A CLDND1 GPR98 MOBP C18ORF32 MT-ND1 PLIN2 JUND GPRC5B UBA52 ZBTB20 RPL23A PTGDS MT-ND2 SLC1A3 HIST1H2AC FTL UBB TF STMN1 SUMO1 CHN1 SARAF CYP27A1 ANLN NFIA RPL38 ARL6IP5 ATP6AP2 RPL13 RPL36A BIRC5 PTGES3 PSAP PPA1 DPY30 GAPDH ALDH1L1 RPS28 CTNNB1 MAP1LC3B POLR2L RPL15 THY1 PAQR8 CALM3 PGK1 ABCA8 MLC1 WASL RPS15 ATP5A1 MTATP6P1 C14ORF2 S100B KLC1 GNAQ PRUNE2 ASPA RPS6 NOTCH3 CBX6 ACSS1 CSDE1 MAP1B SPOCK3 SCD5 SDC4 TUBB4B DYNLL2 TTYH2 CCDC154 ACTR10 CRYAB RPL37A ATP5B LRRIQ1 RPL18A AZIN1 FAM107B QKI SERPINI1 FAM189A2 VAPB PCDHB4 RTKN RGCC RTN3 MYO10 NFE2L1 CNP PAX6 RPL6 ITFG1 YWHAB VWA1 FOXO1 NHP2L1 NDUFAF2 PCDH17 LIG1 APLP1 SPTBN1 PADI2 ACTG1 CCDC152 GDI1 RBX1 SLC1A2 CTBP1 PKM RP11-111M22.2 MTRNR2L1 NDRG2 HEBP2 TGOLN2 RP13-492C18.2 PRNP MTRNR2L8 B2M POLD1 CHADL PDE1C SOD1 ACTB ATOX1 APP UQCRH PTPRS HSP90AA1 RPL12 UBE2F ARL8A GLUL RPL26 MTRNR2L6 RPS12 MIF HNRNPA1P40 PLEKHD1 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "mixed glial cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MBP MOBP PLP1 HSP90AA1 CD63 FTL MT2A MT-ND2 RPL37A SEPW1 RPL26 PRKACB RPL39 RTN3 AP2M1 PTMA KCNMB4 MT1E MT3 MT-CO1 SLC1A3 MT-CO2 NEGR1 RPS4X MT-ND4 KIF21A EDIL3 SPP1 TF ATP5I TBC1D15 DNAJC21 RPS27A ANAPC13 SLC9A6 RPL10A NDUFC2 COL9A3 HSPE1 PACSIN1 MAP1B ERBB3 ENC1 MGST3 CHL1 FXYD6 POMP KCNJ10 CCDC110 TMSB4X DYNLL1 MAPK8IP2 COX6C TMEM130 CISD1 CDH19 UQCR10 IQSEC1 CLDN11 PTPRS SYTL2 STMN3 NDUFB8 GAPDH TNS1 UQCR11 SCD CNP GDI1 ITFG1 ATP5E GORASP2 STMN1 GPR98 CYB5R3 ANAPC11 SPOCK3 NDUFB3 PI4KA SNX3 TAGLN3 GPR17 MAG TSPYL1 EFHD2 COX6A1 RPL13A ITM2B CALM2 RTKN PNMA1 TMEM147 CP SLC1A2 UBC CLTA RAB3B PRDX1 CYFIP2 EID1 PTN RPRM EIF1B RPS28 EDF1 TIMP2 PPFIBP2 IQCK DPYSL2 THYN1 SNCA COX7C MT-ATP6 MT1G TMEM235 ATP6AP2 PRIM1 FOXO1 RTN4 RPS15 FTH1 MT-CYB MAP1A PSMA7 EIF4A2 MT-CO3 RPL8 ATP1A2 BEX5 FAM107B ZNF385D CDC37 SEPT4 ARL8B RAB11A ARPC5L TUBB4A NAPA RPS6 NFIA ROBO2 DPP6 CARNS1 RPL23A ESCO2 SPARCL1 COX4I1 CRYAB PGRMC1 RPL11 HSPA8 UBA52 MTHFS RPS10 RPL41 RP11-20I23.1 RPL17-C18ORF32 RPL17 ATP6V0C\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "mixed glial cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 MBP CNDP1 MT-CO2 MT-ND2 NFIA RTN4 MT-CYB QKI MOBP ZCCHC24 GLUL ITM2B MT-ND1 MT-CO1 CADM2 MT-ND4 PLEKHG3 HIGD1A NAPB SLC6A1 ATP1B1 PSMB7 PIK3R1 MT3 ALDH1L1 TTYH2 ZBTB20 CNP SLC1A2 GPM6A PEBP1 SPCS2 ATP1A2 NKX6-2 ATP1B2 HHIP MT2A SLC1A3 HSP90AA1 LAMTOR5 MTUS1 MTRNR2L12 SCD5 EIF1 SYTL2 RAB3B DNER HMGCR ZNF350 WASF1 DNAJB9 TMEM88B METTL7A ATP6V0E2 KIF21A TMSB4X RPS12 TMA7 SYT11 PPAP2B ACTG1 ATP1A1 SEPT4 MYRF SLC24A2 PITHD1 OLIG1 CLU ST18 PET100 RPS27A GRAMD3 NDUFB2 ZFAND5 TXNIP NDUFS6 APLP1 CDH19 CRYAB YWHAB CLDND1 MTRNR2L1 AK5 ATP5J UBL4A TCEB2 DNAJA1 ATP5A1 PJA2 RPL12 RAB6A PTMA NGFRAP1 ZBTB18 RAP1GDS1 LRP4 MAP1B PRNP PTGDS HEPACAM RPL36A GRM3 YWHAG MARCKS RHEB MTND1P23 SERPINE2 CLMN MAP1A STMN1 NOTCH1 ISOC1 OAZ1 ANAPC13 NECAB1 MT-ATP6 GJB6 APOLD1 BNIP3 FGF2 TUBA1A FIS1 ACTB ARL8B NACC2 HSP90AB1 GJA1 PEX5L CSRP2 PMP2 SPTBN1 AURKAIP1 PRDX1 NDRG4 SOX2 TMOD2 SPOCK1 FTH1 RPL7 VEGFA STMN2 ACSS1 C11ORF84 GHITM C14ORF132 ETV5 ALDOC GPR37L1 APOD CTNNA3 CA2 SSPN ERBB3 HOPX FRMD4B RPS6 EVI2A CPE MT1M KIF1A PRDX2 TGOLN2 PPP1R14A CTNNA2 RP11-111M22.2 RPL41 RNASEK-C17ORF49 RP11-219A15.1 NR1I3 TUBB ARFGAP2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "mixed glial cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MBP PLP1 MT-ND2 HSP90AA1 MT-CO2 ZBTB20 CRYAB QKI RAB3B SYTL2 TF PTMA OLIG1 RPS15 ATP5I DNAJC21 MT-ND4 SLC1A3 RPS27A COX7A2 MT-ND3 PTGDS TMSB4X RPL17-C18ORF32 MT-CYB RTN4 CD63 S100A6 TLE4 COX7C DPYSL2 MAP1A DNM3 CBX6 APP EIF1 SEPW1 RPL23A ATP6V1E1 HMGCS1 PSAP SCD NDUFA13 NDUFS5 RPL32 SEPP1 MOBP NDUFB1 CLMN SOX6 RPL38 MT2A RPL6 PCDH17 ENPP2 SIRPA ARL6IP5 CPE GAPDH C16ORF13 HEPACAM CAPZB PLEKHG3 SSPN NME1 TTPA CD44 MAPK1 MAF HIST1H4H CTD-2020K17.4 GFAP RAB3C CNP DYNLL1 PHB PON2 CALM1 GSTP1 PCP4 PDE1A LL0XNC01-16G2.1 PIK3R1 BASP1 SAP18 NTNG2 NFIA PPAP2B STMN1P1 YWHAH PTPRS SEMA3C PTGES3 HHIP CNTN1 SLC7A1 RTN3 CP DNAJB6 SLC35B1 ITM2C APLP1 UBL5 RP11-195F19.5 VPS35 CRYM ARHGAP35 UBB SOX10 RPL37A NDUFB3 NDUFAF2 CLSTN1 UBE2E3 ATP6V1C1 COX4I1 APOE ARPP19 RASSF3 PRDX5 NRCAM MT-ATP6 SYT1 RPL26 SERF2 MGST3 RPS4X HK1 PDGFRB COX14 TUBA4A PSMD12 NDUFB4 GSTO1 MCHR2 RPL35 HSPE1 SOX2 MT1X ATP5J EHD3 CACNG3 GJA1 TMEM59L SDC4 TCEB2 AP1S2 PPDPF ID2 GDI1 PDE1C ABCA8 SOX21 ATP6AP1 TMEM144 ATP5E GPM6A MAP4 MT1E RPL7 NFATC2 DNAJA1 GAP43 MIR6723 RPL39 TMSB10 NIPA1 CALM2 PSMB7 EDF1 STMN2 ERMN ATP6V0B COX6A1 RPL41 SH3GL2 ACOX2 OAZ1 ATPAF1 SFRP1 NHP2L1 ARL8A DCTN3 CDK17 COL6A1 SPARCL1 HSP90AB1 SKP1 FTL BCL6 RNASE1 CHN1 RAPGEF5 PLIN2 AP3S1 COX7B STUB1 PNMAL1 BLOC1S1 AES CKB MT-CO3 CCDC141 EPB41L3 OXR1 FARSA NAA38 COX7A1 MT-CO1 THY1 RHEB VDAC3 RPL15 SPP1 TMCC3 RPS3A PHPT1 ARHGAP24 PAX6 QDPR ENO2 S100A1 EIF1AX DPY30 SCN1A IGFBP7 CSDE1 CAPNS1 ANGPTL4 TERF2IP TMEM150C NAPB SLC1A2 ATP5F1 DISC1 TRIP6 SEZ6L2 USMG5 SOX4 ATP5H RPS12 C14ORF2 RPL12 TUBA1B MRPS21 COX6B1 PET100 GPRC5B SCG2 ARL6IP1 VAMP2 ANLN PDLIM5 SAMD11 TXNDC17 RPL31 PPP2CB ARF3 EVI2A HSPB1 MTND1P23 BIRC5 TRIM59 FTH1 RP11-219A15.1 RPL21 B2M FKBP1A MT-ND1 RPL36A GTF2H2C_2 SSTR2 ATP6V1G2 RPL13A RP11-597D13.7 ANKRD20A11P PLEKHD1 ZNF385D NR1I3\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "mixed glial cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MBP PLP1 MT-CO2 CLDN5 MT-ND3 MTRNR2L1 PTGDS SPP1 UBC HHATL NDRG2 MT-CO3 EDIL3 MT-ND4 NFIA CTSD TF LAMTOR1 RPL13A RTN4 ABCA8 SYTL2 FAM107B GPRC5B GADD45B CALM2 GPR56 RPS2 MT-ATP6 CLSTN1 CDH19 MT-CO1 RAB3B MTRNR2L12 PDE1C MAPKAPK2 SEPP1 CNDP1 TPD52 BRK1 UBL5 APP MT-CYB ZFP36 BCL6 TANC1 ATP10A PSD3 NAP1L3 MT2A RPS3A KLF10 RPL37A GRAMD3 SLC2A1 GAPDH RPS27A ITM2B RPL31 GLUL NKX6-2 SPOCK1 TPI1 PCDHA4 AP2S1 EDF1 ZBTB20 TOMM20 SPARC APLP1 PSMD12 OLFM1 PREX2 SCD5 RAB6A PEX5L ATXN10 PTMA SLC24A2 APOE FAM69C TPPP SCD LYNX1 JUND SH3RF1 SEPW1 PPIA NDUFS5 ATP2A2 VAMP2 ACSS1 TSC22D4 ATP6V0B PSMC1 PTPRS RP11-597D13.7 MYRF MT1X COX14 PPP1CB PAQR8 CREB5 PCDHA9 ALDOC SPATA13 PGK1 JUNB NDUFA4 DNAJC6 TMEM63A HSP90AB1 FLT1 LGALS3 MOBP TRIM47 ADARB2 TMSB4X TMEM258 LANCL1 RELL1 RPS19BP1 SARAF EPAS1 ST6GALNAC3 ATP5A1 SERF2 UQCR10 ENG PRUNE2 PEF1 CLDND1 PSAP CSRP1 RTN3 LIG1 TMEM88B QDPR PEBP1 GPR37 ARL8A CHL1 KCNMB4 RHOA TNS1 RTKN KLC1 RPL35 COX6B1 QKI CRYAB RPL6 PADI2 VWA1 MTCH1 CLDN11 NOS3 YWHAB NDUFC1 HSP90AA1 PCMT1 GNAQ COX7A2L ATP1B1 VEGFA C11ORF84 ICAM2 REEP2 ATP6AP1 PIEZO2 RLIM CLMN ALDOA MTRNR2L6 RNASEK-C17ORF49 RPL41 DNAJC21 TBC1D15 RPL7\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "mixed glial cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 MT-CO1 KIF1A SNAP25 MTRNR2L1 SYT1 PRKACB HNRNPA1P40 CHN1 SIRPA MBP PTGDS PRNP MT-CO2 VAMP2 CALM2 IDS BEX1 RPL32 STMN1 ARL6IP1 NDRG4 ITM2C SNCA PEBP1 SULT4A1 MT-ND2 PPP1CB KIF21A ATP6V0B PTCHD4 CTBP1 REEP5 FXYD6 HCN1 MYRF SYT11 PADI2 RPL35 SPP1 CLTC TMSB4X MT-ND4 COL9A2 RPL21 TMSB10 MYRIP BIRC5 ACTG1 PSAP GAPDH HSP90AA1 CCK BASP1 GPR158 RPL41 ARL4C MRAS SPTBN1 OPALIN KCNAB1 FTH1 RP11-111M22.2 ATP6V0E2 PTPRS TOLLIP CALM1 PITHD1 GPM6A GRIN2A OPA1 KIT APP ALDOC MT3 COX6A1 CNP RELN HRC FAM219A INPP5F ATP1A1 CLU MTRNR2L12 MTRNR2L6 SCN1A ARL8B TBC1D15 RAB3B ZNF385D CFH ARFGAP2 TF VWC2L GRM3 FLOT2 RGCC PDGFD MT-ND3 RPL38 REEP2 CDK17 WASF1 DYNLT3 ARPC4 WDR47 ASAP2 SERINC1 SEPW1 RABAC1 CDK5R1 RBX1 SYN1 SLC7A5 IQSEC1 UQCRQ PID1 ZCCHC24 RANBP1 BSN AP1S2 FAM163B SLC6A17 NNMT GNAQ TRIB2 PPP2CA ALDOA GUK1 DPYSL2 MAP1A HMGCR YWHAH PAM SLC24A2 TSPYL1 PSMD8 RTN3 TSPAN7 CAPNS1 UQCR10 SERF2 MAPRE2 CCDC85B MOBP IDH3A ZBTB20 COX5B SLC22A17 SYT4 SLC38A1 GSTO1 PLD3 UQCRC2 NDUFA4 CYC1 C19ORF43 FAIM2 RPS12 OLFM1 WASL PRR18 ENC1 RTN1 TOX2 SNCB HHATL C1QL2 TOX3 SSBP3 ID2 RPS6 RASGEF1B CA2 CX3CL1 TMCC3 TMEM59L DNAJC5 ALCAM ACTR10 MAG RPRM TMEM88B GOLIM4 KCNAB3 ATP5G2 PGM2L1 PRKCG PTPRZ1 UBA52 CLDN11 WSB2 ATP11C FBXL15 RAB40B CSDE1 SUB1 SLC30A3 ARHGAP29 CDH13 TCEAL7 PNMA2 MPPED1 SELT ACTB PREPL TSPYL4 ARF1 MRPS21 CHL1 TPT1 COX5A SYPL1 CALM3 CTXN1 PSMB5 ATP6V1B2 PTPRM SV2B ATP1B2 PAFAH1B2 ATP6V1C1 PEF1 TMEM230 PRKCB REPS2 DUSP1 ATP5O ATP6AP1 FKBP4 SCD ATP5B ITM2A GLUL MTATP6P1 ADARB2 CKLF UBQLN2 PCBP1 RASGRP1 PVRL1 EIF1AX MT-ATP6 RPL15 CD63 GYG1 TSPYL5 MYBL1 B3GNT1 MTUS1 ALDH5A1 SLC6A1 NCDN VWA1 IGF1 CNRIP1 SUMO2 RPS5 GRIP2 LDB2 MRPL37 MAP1LC3A MAPK1 UBL5 APLP1 MT-ND1 TNFAIP8L3 TAGLN3 MFN2 DKK3 NKX6-2 NKX2-2 TMA7 SNX10 SPOCK2 GPX1 NFIA GAP43 TMEM63A TMEM155 GAD1 POLR2K ATP5G3 LRP1B RPS15 PCDHGA5 PJA2 RORB GSTP1 ACACB S100A1 VAT1L B3GALT2 C11ORF31 RSPO4 ARPC5L NDUFS6 CYFIP2 PKM PFN2 HAPLN4 RPS2 LPPR4 RPL37A SCG2 HK1 WFS1 YWHAZ HMP19 NGFRAP1 KIAA1755 MTRNR2L8 EDN1 GDA MT-CO3 ENO2 SLC25A6 LDHB RAD23B AC244489.1 NUDT4 RNASEK-C17ORF49 PSMB3 RPL13A\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "mixed glial cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 TF MBP MT-CO3 MT-ND3 MT-ND4 MT-CO2 MT-CO1 RTN3 RAB3B MT-ND1 QKI CLDND1 HSP90AA1 APLP1 MOBP MT-ATP6 MTRNR2L12 TMEM144 RTN4 CLDN11 SCD ATP1B1 MTRNR2L1 ACTB PTGDS GLUL SYTL2 ZNF385D GPRC5B MT-CYB FTL PIP4K2A SPP1 SNAP25 RPS15 OLIG1 MAP1B PTMA GFAP NR1I3 CNDP1 ST18 RPL13 ERBB3 ENO2 PRNP RPL35 RPS27A ABCA8 TSPAN7 PPP3CA SLC1A3 PREPL NFIA ATP5I GPM6A KIF21A GPR37 CALM1 PCDHGA6 PTCHD4 RP11-111M22.2 CSDE1 RAPGEF5 TUBD1 TUBA1A MYRF CREB5 KLHL5 RPL26 ERBB4 TMSB4X CDC42SE2 FAIM2 ATP5C1 APBB1 TPT1 MT-ND2 EDIL3 SYT11 GABARAP RPL21 ELMO1 SUMO2 MT3 RPL38 OPALIN ATP1A2 TMEM63A STMN1 ZNF536 NDRG2 ATP2A2 SLC31A2 CTSD HHIP PSAP TMEM88B SLC1A2 CRYAB DPYSL2 MTRNR2L6 TBC1D15 OR6D1P RPS28 KIF1A NECAB1 CCK DNAJA1 NKX2-2 CKB MAPRE2 DNAJB9 GYG1 MT2A TTYH2 MAP4 GDI1 CPE AP1S2 DLC1 RPL18A MED31 DNAJB6 NDUFA13 EIF1 PGD ALDOA VWA1 EPB41L3 TKT TLE4 SOX10 GRM3 HSPA2 SKP1 SYNPR HHATL MTRNR2L8 OCIAD1 HMGCS1 TMEM59L FTH1 MFSD6 MAP1LC3A MTATP6P1 CLMN ACSS1 RPS5 SYT1 MAG JUND BCL6 CTNNB1 IMMP1L ATP5A1 CLU TUBA1B TSC22D1 AQP4 FAM127A RPL11 PRUNE2 SLC24A2 BEX1 SLC30A3 SEPP1 TXNIP SCN1B SERPINE2 IQCK FAT3 ARF3 MT-ND4L CHMP4B DNER TOMM22 RPL13A ATP5B SPTBN1 TPPP MT-ND5 SLC22A17 GRINA RTN1 CLIC4 ITM2B THY1 EPHB6 CADM2 CALM2 NTNG2 PEBP1 C6ORF1 RPL8 HSPE1 OLFM1 RPL3 CHADL NAPB ATP1A3 PCDHGA5 BIRC5 NDUFA5 SEC61G SLC6A17 PMEPA1 CAPZB JUN S100A1 VDAC2 C14ORF132 CNTN1 MAPRE3 RPL15 COL4A5 SLITRK1 FA2H QDPR SNRPN FOS RAB40B CDH19 SERINC1 NAP1L2 UBE2V2 NIPA1 COX4I1 GPR37L1 NUTF2 ATP6AP2 VAPB RPS6 NKAIN1 PPDPF BEX4 GPR56 HTRA1 MDH2 GABRA5 ITPR2 YWHAG MRPL37 AHNAK XAF1 TMEM141 WBP2 CTBP1 MAP1A VAMP1 RAB6A SYT4 DGKG BSCL2 DOCK10 F3 ADARB2 OPA1 RP11-219A15.1 BEX2 ERH TP53I11 TEFM PLS3 ADAM23 GSK3A INPP5F C14ORF2 PTPRM TSHZ2 CLDN5 ATP5J2 RXRG GRIN2A PPP2R4 TMEM151A SUMO1 NUAK1 RPS19BP1 COBLL1 OLFM2 CALM3 ACTR6 CCT5 C2ORF47 ARHGAP35 NRCAM NDUFB8 FKBP1A CCDC25 PLIN3 ITGB5 RAB11A ATP5G2 TMX4 NACC2 NDUFB3 KCNMB4 ALCAM VAMP5 ZNF365 ZFP36L2 PLIN2 CRISPLD2 TM6SF1 WLS ARL8B RPL39 APOLD1 TRMT112 S1PR5 UBA1 USP5 UBA52 DDAH1 NDFIP2 EIF4A2 TSC22D4 PHPT1 HEPN1 CORO2B CAB39 FAM69C HSP90AB1 MAL TERF2IP MTCH1 PGM2L1 FRMD4B CPNE2 ASPA CD44 STMN2 RP11-597D13.7 C1ORF56 SQLE ATP5G3 NAP1L3 PCDHB4 ARL4C MFN2 PPP1CB MTG1 NPAS3 SSBP3 NKX6-2 PRKCB SLC2A1 ATP6AP1 KRAS CNTROB PNMAL1 KCNK1 OPCML RAB2A CNP PVRL1 RANBP3L PTGES3 MT1X TGOLN2 CD9 POLR3H FKBP8 BNIP3 SPOCK1 HIST1H2AC DCTN1 CARNS1 CNRIP1 RPL37A GAD1 FOXO1 RHOB MORF4L1 MRPL33 PROX1 PDLIM5 TAGLN2 C1ORF95 ARPP19 PTPRS NINJ2 TMEM120A SLC14A1 S100A6 TCEB2 LGI3 RNASE1 TCEAL2 PPP3CB PSENEN ATP5F1 RPS12 TUBB2B NCOA4 COX5B EID1 CSRP1 NAPA ACTG1 ATP6V1F RPS3A AES SLC6A1 APEH HEBP2 IQSEC1 RPL36A MAGED2 SERINC3 CDK17 S100B RELN BCAS2 NEK7 GNB1 LANCL1 PRKACB PJA2 TNNT2 PI16 LRMP UBE2N BCAS1 ARL8A CHN1 GGTLC2 SYN2 NDUFA11 GABRA1 RP11-403P13.1 VCAN C2ORF74 CLTC SARAF TBCA NDUFB7 APP LMO4 PPP3R1 PIK3R1 NRGN AP2B1 SULT4A1 UBE2QL1 HAPLN2 SEPW1 TSPYL4 FAM19A2 CYFIP2 CLPTM1 ETFB ATP6V1E2 TMA7 PTPRZ1 RPL31 PFKP NGFRAP1 TUBB4A TLN2 ZBTB20 MRPS28 COL21A1 FAM111A POLR2L ARF1 COQ10B APOD PCDHA9 EZR PDE1C APLP2 SEPT4 ZBBX ZCCHC24 CTNNA2 CTC-575D19.1 CAMKK2 NDUFB4 CBLN1 TRIM59 AIF1L PCSK5 ENC1 CORO1B LMBRD2 ZMAT2 DYNC1I1 ZFP36L1 MYL6 HOMER1 MAPK1 GJA1 TMSB4XP4 HS6ST3 PAQR8 UBQLN2 RPL41 ATP2B2 ENPP2 SUMO3 CRIM1 DPY19L1 RTKN NUDT21 FAM134A RASGRF1 PAFAH1B2 DKK3 VAMP2 HES1 C10ORF54 ATP6V0B COL9A2 BRINP3 NR2F2 PPAP2B GLO1 PCDH8 PPP2CB SPATA13 NEGR1 RASSF8 CHCHD2 PSMA7 KIFAP3 RPL17-C18ORF32 RPL17 FXYD6 NGRN SERF2 NSF IDS AC244489.1 CYB5R3 PSMC1 ATP6V1G2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "mixed glial cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: HSP90AA1 RAB3B MT-ND3 MT-ND2 PLP1 MT-ND4 SNAP25 ZBTB20 QKI ATP1B1 CNTNAP3 MT2A RP11-219A15.1 DNAJC21 MT-ATP6 GRAMD3 TMEM130 RTN4 DNER HSPB1 MT-ND1 TMSB4X MT-CO2 NFIA PREPL MTRNR2L1 SCD5 SCAMP5 SLC9A9 CADM2 DPP6 STXBP1 KIF1A NEFL TF PPARGC1A RPL13 PLCB1 PIK3R1 SCG2 PPIA ARL4C HMP19 SEPW1 CLDN11 ATP6V1A TMEM70 VAMP2 ZBTB18 PRDX1 POMP SLC38A1 COX6C ALK RPL23A ELAVL2 YWHAG SYNJ1 APOLD1 BCL11B TOX CKB SLC6A1 CAMKK2 LRP4 SYT1 CNTNAP5 ATP1A1 PDE1C PHYHIP MBP ITM2B RPL32 PPP3CA TMCC3 TSPYL1 PPP3R1 FBXO40 ACTB BSCL2 FKBP4 ITGB4 ALDH1L1 APP SNCB FAM189A2 RPL37A TSPAN7 DCN ACOT7 PTGDS ENOPH1 UBB LHFPL3 GLUL SDHAF1 C11ORF84 PEBP1 CALM1 PPP2R1A HOMER3 SPARCL1 OLA1 DOCK10 GPR98 HIST1H2AC ZFP36L2 VPS35 NRF1 ATHL1 ZFP36L1 NACC2 CTDSP1 RPL11 MT1X MIEN1 TMEM132C EVI2A HS3ST3A1 GAPDH SLC19A1 ATP2A2 NFE2L1 MT-CYB CX3CL1 MZT2B NRCAM NUDT4 MT-CO3 COL5A3 SPOCK3 ATP1A2 HMGCR NDRG3 FARSA SYT2 ETFB RP11-597D13.7 PJA2 TMEM144 PRKACB MT1F ATP6V1C1 CAMK2N2 PHLDB2 NSF RPL17-C18ORF32 IDS PGM2L1 C18ORF32 RPL41 PTCHD4 RPL21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "mixed glial cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 HSP90AA1 FTL SYTL2 PDGFRB MT2A PLEKHG3 ATP1B1 APLP1 PIEZO2 PTGDS SUMO2 PSAP VCAN SYT1 TUBA1A RPL7 KCNJ10 SLC1A3 TMSB4X MBP DYNLL1 SLC1A2 TLE4 SARAF CALM1 FAIM2 GPRC5B SOX11 RPL12 CDC42SE2 ANXA6 DDR2 TLR4 SLC24A2 RPL13A DMKN CRYAB FKBP4 NCAM2 PLD3 MT3 BLNK PGRMC1 STXBP1 C14ORF132 PSENEN CREB5 PTN GLRA3 JUND MYO1B ARL8A GRIN2A PCMT1 MAGEH1 PTPRZ1 MT-ND2 RHBDD2 MRPS21 DGUOK SPP1 PFN1 RPL38 ATP6V0E2 GAPDH MAPK1 CERS6 GPX1 AP2M1 GHITM ATOH8 PCDHGA6 RAPGEF5 PRNP KCNA1 SEPT4 TKT CBX6 ATP2A2 PAX6 PPP3CB PRUNE2 IDI1 RPL39 RPL37A MYO10 COX6C MAP7D1 MYEOV2 NDUFA5 RPL13 PTMA RTN4 NOTCH1 RPS6 MOBP MT1F NDUFA12 SPOCK3 YBEY RPL31 ATP6AP2 SLC22A17 MTCH1 HSP90AB1 ATP5G2 HDDC2 MEGF10 TUBB2B RPL26 MORN2 PPP1CB APOD MT-CO3 SERF2 CABP1 HINT1 ATP5O NCKAP5 NKX6-2 TMEM130 NDRG2 TUBA1B PEG10 MIEN1 HTRA1 DPYSL2 MT-ND3 RPL32 MT1G CADM2 SRD5A1 RPS27A SLC25A5 KLC1 SHC4 NSF PDP1 QKI RTN3 PPP3CA CLU TMEM230 ATP5E TCEB2 LINC00116 ALDOC CAPZB PARM1 PEBP1 DNAJC6 MT-CO2 TPI1 RPL15 YWHAG GNAQ PSMC1 NDUFS6 S100A1 MYBPC1 CCK SELENBP1 MYRF REEP5 NDUFA11 RPS15 TRIM59 MT-ND1 IDS MTND1P23 B2M RPL36A RPL23A RPL21 TBC1D15 DNAJC21 RAB3B\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "mixed glial cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 MT-CO1 MT-ND4 MT-CO2 MT-ND3 MT-CO3 TF MT-ND2 APLP1 MTRNR2L12 SPP1 RAB3B ATP1B1 MTRNR2L1 MT-CYB QKI TBC1D15 SLC24A2 CALM1 ERBB3 PSAP TXNIP MBP PTGDS RPS28 NR1I3 HSP90AA1 ZBTB20 FTH1 MOBP PEBP1 MT-ND1 SCD MT-ATP6 RTN3 DPF3 GFAP PREPL TUBA1A EDIL3 SLC1A2 SLC1A3 CLDND1 CALM2 SCD5 MT-ND5 GPRC5B RPL17-C18ORF32 SYT1 SNAP25 GLUL TLE4 RPL31 ELMO1 HSPA2 RPL37A SPOCK1 PTMA SYT11 HSP90AB1 HEPACAM RPS6 WIPF1 RTN4 DNM3 ACTB CPE PAQR8 MAPRE2 MTRNR2L8 CTNNA3 ENO2 PDE1C TMEM144 CTC-575D19.1 HHATL PEX5L NECAB1 CNP CRYAB MTUS1 HHIP BIRC5 UBC FTL PKM APBB1 KIT DKK3 PJA2 PSD3 TUBB4A ZFHX4 RPS27A RPL35 CLU PTPRZ1 RPL32 MEGF10 SSBP3 CCK APLP2 SNRPN IFITM3 TMSB4X PIP4K2A EIF1 GNAQ APOD RGS12 NAT8L RPS15 CADM2 ARL6IP1 TMEM63A DNAJB6 SELT NDRG2 THSD7A RPL13A OLIG2 OCIAD1 RPS12 GAPDH OAZ1 AK5 BNIP3 DPYSL2 CLDN11 APOLD1 DNAJC6 TTYH2 RNASEK-C17ORF49 TALDO1 PRKACB ATP1A3 ADARB2 ATP6V0E2 CKB CFH SERINC3 NFIA SLC31A2 ID4 PIEZO2 ELAVL4 HAPLN2 DOCK10 RASGRF1 MAP2K4 EIF4A2 RPL23A GPR37L1 PPA1 CA2 ATP5O PROX1 OLFM1 RAB6A CREB5 MT-ND4L PRNP EFR3A ZFP36L2 ENC1 RPL21 LMO4 VAMP2 PPP3CA GRIN2A TCEA2 HS6ST3 TOLLIP MAL GPIHBP1 ITM2B ASPA CHN1 AQP4 EIF4G2 SPARC COX8A DCLK1 METTL7A CCDC69 DYNLL1 CLMN SEMA3B EID1 APP MAG SCN1A CHCHD2 SEZ6L2 HTRA1 TPPP RANBP1 RNF11 PPP3R1 CD99L2 UQCR11 RTN1 ERBB4 C19ORF70 MLF2 FOLH1 TOMM7 COL4A5 CARNS1 SCOC AZGP1 SAMM50 TPT1 ANKRD18A MAP1B TRIM59 CTSD ALDOC FIGN YWHAB RP11-111M22.2 TUBD1 KLC1 RPL6 S100B ACACB VDAC2 AP2B1 TUBA1B RPL17P50 MT1X TGOLN2 HDAC1 SEPP1 MRPL55 ATP6V0B ATP6V1G1 NPAS3 MT3 MYRF JUND SQLE QDPR ST18 MAF NIPA1 TOMM20 ZNF385D MIR6723 TEFM NAP1L3 C10ORF54 TIMP2 SLC6A1 NFE2L1 DPP6 SYNGR3 NAPB RPS26 BSG INSIG1 S100A13 PLD3 SYN2 HS3ST4 BCAT1 CNTROB FAIM2 SCG2 LAMA2 RPH3A PHB EDF1 FOXO1 IGFBP5 SLC25A6 CA11 RPL38 RHEB TLN2 CD24 CRKL TMEM147 REEP5 MDH2 DNER PGK1 C16ORF13 RTKN PRTG CBX6 THBS4 CRISPLD2 CST3 LATS2 SLC12A5 SYNPR THBS2 SYT4 PTN AP2M1 PARP14 GNG5 PDP1 ATP6V0D1 CYP2J2 PDK4 LAMTOR5 TPD52 MTG1 SUMO2 BMPR1B UQCRB NRAS SMIM3 HIST1H2AC PSMC5 PCDHGA5 PRPH2 UBL5 NACC2 PFKFB4 ARL6IP5 CD63 SPTBN1 PPP1R14A NTNG1 ATP6AP2 RPL18A PNMAL2 RAPGEF5 CPLX1 CLIP3 MTATP6P1 CTBP1 NDUFAF2 HMGCR OXR1 EDN1 PEA15 SCN1B DIRAS1 SMIM12 TANC1 ATP1A1 KCNAB2 ANLN GOLIM4 MAGED1 KIAA1211 COL6A1 RGCC NDUFA11 PTGES3 KAL1 GADD45GIP1 NKX6-2 EIF1AX OAT PI16 NDUFS6 CNDP1 FAT3 CAPZB SERP2 NPTX2 ASCL1 FAM131B ITGB4 TMEM150C CSRP2 SNAP91 CRYZ NCEH1 CRIM1 PPP2CB CALN1 ITGA6 NR2F2 PHF11 EPS15 GHITM UBE2N YWHAG GPM6A ZFAND5 AP2S1 PRKCB PGM2L1 IDH3A VCAN ATP2B2 TMTC4 ZNF880 NDUFB4 SPOCK3 RAB6B SLC24A3 FRMD4B SPARCL1 KIF5A REPS2 IGF1 TSPYL4 LIMK1 TMEM59L HEPH SLC22A17 CRHBP HSPA4 C14ORF132 HPRT1 CDK5R1 RPS5 CDC42SE2 CNRIP1 THY1 LAGE3 PCBP1 AGT NDUFA4 NCOA4 RPL26 RHOA CCT5 TMSB10 PRDM8 RANBP3L MRPL52 S1PR1 KIAA1024 PRDX1 TMOD2 CPLX2 ZBBX RAB1A PTCHD4 PAX6 NUDT21 STMN2 ARHGDIA KLHDC3 HILPDA UBE2F LRRC69 IMMP1L FAM107B MPP1 NINJ2 DSTN COPS7A CMTM5 ONECUT2 FIBIN GORASP2 PNKD IFI16 ATP6V1E1 WFS1 SIRPA NREP PPP2R1A MFGE8 DGUOK GPR37 STMN1 SLC17A6 SEPW1 KCNJ10 SELM MTRNR2L6 MT2A CA9 RAB4A MAPRE3 GAP43 ARF1 HSPA8 TUBB2B TMX4 ADAMTS1 GPR158 PTPRS MARCKSL1 RABAC1 TM2D3 PTHLH TMEM88B TNS1 TSC22D4 RAB3C CLPTM1 SCAMP5 SPX SPOCK2 ATP5C1 HMP19 TMEM255A HEPN1 POLR2M TSC22D1 RAB3IP COX7A1 BTNL9 NFATC2 SNX10 TMEM123 PON2 WBP2 RPL41 RLIM SARAF NUAK1 HFM1 BAI2 PADI2 EVI2A HDLBP CLTA ATP6AP1 CYBRD1 NCKAP5 PTPRN2 SEC61G MAP2K1 RPS4X DYNLT3 ATP5G1 C1ORF52 ANXA6 LDOC1L RPL15 FIS1 TMA7 NSF FAM69C CNTN1 ATP2B4 CHADL JUNB RPL39 RXRG GSTT1 PTPRT SNX17 CD9 NCAM2 S100A6 LCNL1 ARF3 MAPK1 CTNNB1 DCTN1 FGFR3 MARCKS GPX4 LL0XNC01-16G2.1 NDN RPS3A ZNF385A DISC1 CLSTN1 BEX1 NDUFC2 NGFRAP1 GDI1 KCNA1 SYNPO DCN SHC4 SOD1 SEPT4 ANGPTL4 C10ORF90 PRUNE2 ZFP36L1 RASGRF2 MORF4L1 RRAGA MRPL20 CDR2L COL9A2 FAM198B CX3CL1 GALNT12 LMBRD2 RAB40B RPL3 MYEOV2 MAOB LANCL1 RPL8 RAB34 ATOX1 SERINC1 RP11-597D13.7 ATP5G2 SOX2 ITFG1 FSCN1 IDI1 ABCA8 PPDPF VWA1 ATP5J CCDC115 CPLX3 TMEM11 BAG4 OPA1 CFL1 GGTLC2 C1S ENO1 TMEM35 MIF ARF5 B2M ZNF365 LDHB RPL36A GABARAP FAM134A AC244489.1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "mixed glial cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SLC1A2 NDRG2 GPR98 MT-ND3 CLU MT-CO2 SLC1A3 NFIA PTN SLC14A1 RORB RAB3B QKI HSP90AA1 GPRC5B MT-ND4 STON2 SPP1 DPYSL2 MT-CO3 TMEM144 SYTL2 ETNPPL TF TUBD1 GDI1 PPM1A TMEM65 GPM6A HOMER3 ATP1A1 SARAF MAP1A DNM3 SUMO3 MBP ATP1B1 RABAC1 ETV1 BEND5 CCL2 OCIAD1 ETFB AIF1L RAB3IP COL5A3 IFITM3 PLD3 CADM2 SLC9A9 SRP14 NAPB SLC39A12 ZBTB20 TMPRSS3 RPL31 MT-ND2 BCL6 MT-ND4L AEBP1 DNAJB9 SLC9A6 JUNB LRP1B PEA15 HEPN1 ERBB4 TANC1 FIGN SUCLA2 ITM2C MTRNR2L1 MAPRE2 FOS GJA1 HNRNPA1P40 CTSD CLMN PLIN2 RTN1 RAPGEF5 CARNS1 UQCRC2 MT-CO1 MARCKSL1 HIF3A TTYH2 MUM1L1 THY1 ACTG1 EPS15 DNAJB6 GRAMD3 AGT PREX2 ASAP1 MAP1B ATP1B2 NDUFAF2 ARL6IP5 TALDO1 C1S ZNF703 CDK14 GFAP CLSTN1 TXNIP MTUS1 HSP90AB1 F3 SLC35B1 MEGF10 FRMD4B S100A1 RPL41 HEPH NPM1P30 CFL2 RPS6 MT3 CYCS NACC2 ITM2B PAPLN SERPINI2 PLP1 CLDND1 MGST3 EDIL3 TMEM150C DGKG HEPACAM RPL21 RPL36A AC244489.1 CYB5R3\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "mixed glial cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 ZBTB20 MBP TBC1D15 MTRNR2L12 SEPP1 MT-ND2 SLC1A3 TXNIP CLU TF RAB3B MT-ND4 RTN4 MT-CO3 NFIA MT3 SEPT4 MAP1B MT-CO1 PTGDS CLDND1 PEBP1 MT-CO2 CLMN PIP4K2A CLDN11 APOD CALM1 TMSB4X FTH1 HSP90AA1 RP11-219A15.1 ESCO2 UBE2N THBS2 APLP1 RPL21 SOX2 GPRC5B PTGES3 LGI3 EIF1 MT-CYB GPR37L1 MT-ND3 MT-ATP6 MTRNR2L1 PIEZO2 GPR37 MT-ND5 RPS28 SALL1 PPP1R14A PEX5L ZCCHC24 PTMA TMEM144 SPCS2 HNRNPA1P40 BCAS1 SKP1 RP11-111M22.2 CNP HOMER3 FOLH1 DKK3 ARL6IP1 NDUFB1 ATP1A1 NAPB PCDHGA5 PPP1R9B ATRN THYN1 ISOC1 GAPDH NDUFB10 MAST3 ATHL1 ANGPTL4 NDUFB4 FABP5 SPOCK3 CPE COX5B CAMK2G PCDH17 SEMA3B SLC39A10 RAP2A TMEM88B DYNLL1 MT1X TKT TOX3 PRNP CD44 CDH19 ATP5J DLD NDUFS6 TENM3 GRAMD3 QDPR SLCO1C1 BRK1 ARFGAP2 UQCR11 BEX2 PTPRZ1 RTN3 ATP1B1 ENO2 MFN2 FRMD4B TOMM20 ST18 UHMK1 DGUOK CAPNS1 SCN1B PHB YWHAQ YWHAB HSPA2 NDRG2 SLC31A2 RAD23B TBCA YWHAH PCBP1 NDUFB2 MRPL47 ATP6V0C CTNNB1 HCN2 S100A13 RASL12 AC244489.1 HEPACAM SQLE CREB5 TMEM63A PPAP2B SLC14A1 FOXO1 FAM107B EMX2 SRP14 GPIHBP1 GPR98 PRKACB RP11-597D13.7 VWA1 ADARB2 CALM2 RPS12 RPL38 WIPF1 RASSF8 PITPNA APOE ALDH1L1 FAM96B SUMO3 MRPL55 RPS19BP1 SPARCL1 C1S A2M TLE4 TSC22D4 NDUFA5 RAB40B AHNAK AQP4 HSPE1 SERPINE2 NECAB1 PLEKHG3 ETNPPL ACTB SHC4 ATP5I ATP5B FTL RP11-20I23.1 FSCN1 COBLL1 EIF4A2 MT-ND4L CYP27A1 OLIG1 PRKAR1B CDH8 PSAP ELMO1 DNAJC6 KLC1 NKX2-2 TCEA2 RAB4A CLTA DNER GLUL PAQR8 MAG SYT11 GOLIM4 KLHL5 MAL SCD RPL41 EDIL3 MYL6 MT1E LIMK1 COX4I1 ATP6V0B HINT1 PREPL YWHAG NGFRAP1 MOBP VAMP2 ASPA ACTG1 MAP1A PHKG1 IDS MTRNR2L6 BSCL2 RNASEK-C17ORF49 ALDOA\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "mixed glial cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 MT-CO2 TF MT-ATP6 MT-ND3 SLC1A3 MBP ATP1B1 RPL11 APLP1 FTL SPP1 PEBP1 MT2A ZBTB20 SERF2 HNRNPA1P40 REEP5 HSP90AB1 TIMP2 PIK3R1 FAIM2 GAPDH PTGDS CREB5 S100A6 UBB RBX1 MT-CYB SPARCL1 ATP5I MT1E APP MT-ND4 VCAN RPL37A QKI PPP3CA ITM2C PTGES3 SEPW1 HSPE1 THEMIS2 PRKACB HSP90AA1 RPL15 MOBP TMEM144 TBC1D15 DNAJC21 NDUFA13 RPL6 RP11-219A15.1 COX6C MRPL51 LMBRD2 GNAQ ARPP19 WSCD1 STRAP SEC61G VAMP2 C1QB TMOD2 MTCH1 SCG2 RPL39 MACROD1 RPS27A HTR2A KIF5A C14ORF2 LRP1B MAP2K4 RPL7 PEG10 SOX2 CD9 DAW1 NCDN PTPRZ1 PFKP TMSB10 SLC22A17 PFDN1 MTRNR2L12 SUB1 CALM2 PSAP SYNPR ENO1 H2AFZ DYNLL1 MRVI1 RAB3A DGKG RPS5 SUMO2 CBX6 PRDX5 TUBA1A MT3 HSPA2 SCD GABARAPL2 NFIA SLC35B1 DYNLRB1 CPNE4 MT-ND2 STMN2 RPL23A HS6ST3 NDRG2 GSTT1 COX17 IGFBP5 CLDN11 EIF1AX PADI2 SEPP1 GUCY1A3 RP11-154D6.2 PTMA ARPC5L SLC6A12 GSTO1 MRPL52 RPL12 KCNJ10 SIRPA HHIP SSBP3 TMSB4X EDNRB RPL26 RPL10A CRYAB NEUROD1 GPR98 EFNB1 EPS8 TXNDC17 S100A1 GPR56 CLMN ERBB3 CHL1 RIT2 NDFIP2 ATP6V0B HLA-DQB1 MAPRE2 WARS HSPA4 SHARPIN PDGFRB CD63 OAZ1 EVI2A TLE4 CHIT1 GABRA5 SARAF OST4 CDH13 MYO10 CTBP1 MTRNR2L8 ASAP1 RTN3 DPYSL2 CYC1 CLU PRNP ACTB PRUNE2 RANBP3L TGOLN2 PRKCB CKB OLIG1 NACC2 COPE FGFR3 NHP2L1 GRM3 LRRC69 IQSEC1 RPL13A NDUFAF3 CADM3 COX7C ISCU SYTL2 ZNF385D RAB3B ARFGAP2 RPL17 MTND1P23 CFH RPL17-C18ORF32 MT-ND1 IDS ATP5O ATP6V0C GABARAP RP11-20I23.1 TRIM59 RPL41 RPS2 RPL18A ATP6V1G2 RPS3A\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "mixed glial cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 MT-ND2 MT-ND3 TBC1D15 FTL MT-ATP6 CLU SPP1 HSP90AA1 MOBP CRYAB MT-CO2 PPP3CA TF ATP1B1 RPL38 TOMM7 RTN4 CLDND1 SLC1A3 APLP1 MBP TMSB4X UQCRB ZCCHC24 DKK3 SERF2 NDUFC2 ATP5E HHIP HSPA8 RPS4X CA2 DYNLL1 CTNND2 SPARCL1 HMGCR SH3BGRL3 SRR STOX1 DNAJA1 SH3RF1 RPL26 SLC35B1 ITFG1 SDHAF1 RGCC ERBB3 STMN1 ATP5F1 EIF1AX SLC38A1 TMEM63A NDUFB4 SRP14 ATP5J SLC1A2 CSRP1 ATP5I ATP6V1E1 GSTO1 NAP1L2 GPR37 TUBA1B PRNP PREPL VDAC1 HSPE1 CAMK2G CFL1 ACTG1 SLC19A1 PLIN3 RPL37A YWHAZ NDUFB7 CAB39 CRKL ZFHX4 CALM2 RPL8 PCSK5 NDUFB8 AURKAIP1 TUBA1A SPARC ENPP2 CYB5R3 MAG NRIP3 SYT1 TUBB4A POMP MRPS21 PRDM8 RPL35 CIAPIN1 MTUS1 MT-CO1 CST3 PDCD5 GABARAPL2 GJA1 PNKD MAP1A RPL23A OAZ1 CCDC115 SOX2 SEC61G JOSD2 PPP2R2B DPYSL2 DPP6 PRDX1 QDPR SPOCK2 UQCR11 NDUFA4L2 KCNC2 PTMA COX8A ATP2B4 HTRA1 MGST3 REEP5 RPL10A MYEOV2 PRR18 NKX6-2 BEX1 GPR37L1 MAP1B GPRC5B AQP4 PRUNE2 VAMP2 TALDO1 NTN4 C19ORF43 PDGFRB PPP2CB MT2A EDIL3 MYL6B UBB ARL8A KLC1 B2M ZNF385D SYTL2 ESCO2 RAB3B RPL18A RPL13A RP11-219A15.1 PCDHGA6 PTCHD4\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "mixed glial cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ZBTB20 MBP PSAP MT-CO2 TF MT-ND4 CLDN11 CA2 NRF1 DPF3 ATP1A3 KLC1 SLC1A3 HEPACAM MT1E OR6D1P MT2A SLC1A2 ACACB MT-ND1 LCNL1 CKB BMPR1B GPM6A RTN4 ATP1B2 MAL TCEA2 TIMP2 DNAJC6 PIEZO2 AQP4 CALM2 SLC9A3R1 EPS8 SCD TCEB1 ALKBH7 DSTN PEX5L ATP5F1 PPP1R14A CPE IQSEC1 ENPP2 DDAH1 NKX6-2 HSP90AA1 ITM2B ROBO3 CDC37 ITM2C ITGB5 SDC4 ARL6IP1 ETFB UQCRC2 ATP2B4 ALDOC CNTN1 MEGF10 C12ORF57 DPYSL2 PPP2CB PAPLN PLTP PTN RPS28 KLHDC3 PAQR8 SPOCK3 RPL8 SLC31A2 PHYHIPL APOD NHP2 VAMP2 RPL37A TALDO1 METTL7A DIO2 MT1F ATP6V1B2 PTGDS PJA2 HSPA2 MRPS7 MT3 SLC24A2 CLMN WBP2 PRUNE2 SNAP25 PBXIP1 MT-ND2 PTPRZ1 ARL8A MGST3 CAMK2D PRKAR1A PRDX2 KAL1 WFS1 MGST1 MYRF RAB4A MIR6723 RP11-219A15.1 MT-CO1 PPP3R1 IDS AC244489.1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "mixed glial cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SLC1A2 PLP1 SLC1A3 MT2A CLU PTGDS GFAP NAT8L MT-CO1 ZBTB20 VEGFA NFIA QKI BCL6 IGFBP7 PAPLN ACSS1 MBP ZNF385D RAB3B SYTL2 TMEM144 FTL UQCR11 HIST1H2AC RPS28 RPL31 PTPRZ1 WLS CKB FAM43B ARL8A RPL36A RPL37A SYT11 DPP6 GPR98 NPAS3 CYCS GRINA RHOB SCD5 ZCCHC24 CREB5 TMEM258 GLUL RP11-111M22.2 PPAP2B TPPP NDP ENSA DKK3 HSPA2 ATP1A2 NPM1P30 MRPS21 TMEM59L ZFP36L2 GJA1 SERPINA3 CRYAB ENO1 SPON1 KAL1 PRNP TBCB MLC1 PHYHIPL MOBP CLDN11 CAMK2G EID1 PSAP SLCO1C1 ATP5I YAF2 RP1-228P16.1 CLDND1 USMG5 CPE HHATL ATP2B4 ALCAM TUBA1A COL5A3 METTL7A MT1E TSPYL4 DNAJC5 TMEM230 NAP1L3 CD59 FAM189A2 C12ORF49 AQP4 ACTG1 HSP90AA1 SLC14A1 MT-CO2 SPARCL1 APOE BLVRB GABRG1 ARL6IP5 RAMP1 ITPR2 EIF1 SLC6A1 FRMD4B RTN4 OLFM2 ITM2B EDIL3 ETV1 RNA5-8SP6 PAQR8 SPATA13 FTH1 PGM2L1 ATP6V0C RPL6 RP11-20I23.1 RP11-219A15.1 GTF2H2C_2 PCDHA10 PCDHAC1 PCDHA9 PCDHA4 DNAJC21 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "mixed glial cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 GPRC5B FTH1 PTGDS CALM2 MBP TF CNP FTL TCEB2 SCD EDIL3 PEBP1 OAT OCIAD1 STMN2 RTKN MTRNR2L12 RPL13 ERBB3 SOD1 DPYSL2 RGCC ITM2B TMEM144 MOBP RPS15 PIP4K2A OPALIN RPL38 THYN1 MARCKSL1 SEPT4 RTN4 CLDND1 ZNF365 SEC61G PHYHIP ZCCHC24 LAGE3 RPL37A ELMO1 METTL7A GPR37L1 MT-CO3 CD59 GNAQ ATP5I TSC22D4 RPL15 CADM2 APP ABHD14A UCHL1 PRKCE SPARCL1 PPDPF RAB1A CTSD STMN4 GAPDH COX7C RPL10A SPOCK3 SLC25A6 SYT11 GPCPD1 NELL1 KCNJ10 ATXN10 CREB5 MGST1 MT-ND2 FAM127A DNAJB6 MT2A COX14 GPR37 AGA KIF19 STK39 SYPL1 TOMM20 RPS12 VWA1 SEPP1 ELAVL2 ARF1 MTRNR2L8 QDPR HSPBP1 MAPK1 COMMD6 MDH2 ZNF536 CDC37 HHATL RHOB JUND PPP2R2B COX4I1 EIF4A2 NFIA OLIG1 RPL11 PSAP COL9A3 CFL2 UBE2V2 ALKBH7 CISD1 PSD3 SNAP25 PRKACB MAL ABCA8 ANGPTL2 FA2H RAB40B PPP3CB PCMT1 C19ORF70 ZBTB39 ZIC4 DNM3 CARNS1 MAGEH1 EPS8 POLR2I C14ORF2 MAP1LC3B MT-CO1 UBL5 PGM2L1 RTN3 BLVRB TMEM151A NDUFS5 CLIC4 TSPYL1 PRELID1 QKI LCNL1 ACTG1 YWHAZ ATP6V1B2 NARS ENPP2 TPPP ATP1B1 TXNIP PDE1A SLC6A1 SEZ6L2 MACROD1 UBA1 ASPA RAB11A BAD KIF1A CLDN11 PPP1R14A NSF NGRN CFH GTF2H2C_2 ZNF385D RAB3B SYTL2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "oligodendrocyte A",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MBP TF PLP1 SYTL2 MOBP TKT QKI HSP90AB1 CALM1 RPL21 CARNS1 TMEM144 SLC24A2 PPP1R14A FTH1 ANLN TBC1D15 ATP6V0E2 TCEB1 MFSD6 SNRPN ATP6AP2 SNAP25 STMN1 SCD ZCCHC24 NGFRAP1 OXR1 PTGES3 DNAJC6 PKM UQCRQ CHGB HHATL GDI1 MRPL20 MORF4L1 CTC-575D19.1 GAPDH CNDP1 RAPGEF5 ALCAM MAPK1 ALS2CR11 FAM107B TMA7 RPL13A ZNF208 RPL11 RPL23A ATOX1 CREB5 DRAP1 RPL35 BRK1 RPS3A CYP2J2 TPPP TUBB4A TPT1 RP11-111M22.2 MAP2K4 BANF1 ZBTB20 WIPF1 HTRA1 S100B ATP5E ARPP19 SPP1 MT-ND3 PIEZO2 PIK3R1 PTGDS HPN PPIA PAQR8 RP11-597D13.7 RPS19BP1 RPS15 CLTC GPX4 QDPR OXCT1 BCAS1 PTMA MTUS1 RHOB PSMD8 UQCRB TCEB2 CDC37 MARCKSL1 AZGP1 RPS6 UBC CRYAB HHIP DLD SERINC1 COX6B1 CLMN GLO1 UQCRC2 RP11-404G16.2 RELN IDS NR1I3 ARFGAP2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "oligodendrocyte A",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 MBP APLP1 PPP1R14A TBC1D15 TF ERBB3 SEPP1 MOBP HHATL NGFRAP1 TMEM144 SEMA3B AIF1L DPYSL2 CLDND1 PIEZO1 PCDH17 AGT YWHAG PPDPF QKI NDUFB11 RPL18A RPL13 CAB39 FA2H GPIHBP1 COL9A3 ZCCHC24 CKB PAFAH1B2 TMOD2 CNP RTN4 PRKACB CALM2 ETFB UQCRC1 PPIA NDUFB2 CLTC MT-ATP6 MT-CYB RAP1GDS1 SLC24A2 TSC22D4 LMBRD2 ERMN TMEM235 NDUFS6 PEBP1 GAPDH ELMO1 PTGDS RPL36A CDC42SE2 CHCHD2 SOD1 CTNND2 SCD5 RPS2 NCAM2 PEA15 C12ORF57 LINC01296 ZBTB20 MTG1 NFIA TXN NDUFS5 LRP4 MSMO1 NDUFB10 FAM131B MTUS1 LCNL1 ITM2A CAPNS1 FRMD4B CARNS1 YWHAQ MAPRE2 RAB40B TPPP GNB1 TPRG1L CORO2B APP ASAP2 S100A1 SCAMP5 CTSD DNAJC21 BIRC5 IDS MTND2P28 RAB3B SYTL2 MT-ND2 CFH CYB5R3 NR1I3 ZNF385D\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "oligodendrocyte A",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 TF MBP CRYAB ANKRD18A TMEM144 ACTB SYTL2 PLEKHD1 RAB3B RTN4 ENPP2 MT-ATP6 MT3 HEPN1 PTGDS SEPP1 TUBA1A ZBTB20 MT-CYB NCKAP5 C14ORF2 PI16 SEPW1 CLDND1 RPL32 FMO5 S100B AP2S1 PEX5L STMN1 PIP4K2A PRDX1 REEP5 MT-ND4 EID1 ERBB3 PRTG NDUFA1 ATP6V1A RPL15 PEBP1 NAPB CP ROBO3 SPP1 NDUFS6 FOLH1 MRFAP1 DHCR24 CLDN11 CAPZB FIS1 MLLT11 PPP2R2C SRP14 PPP2R2B ASAP1 COX17 RPS2 DPYSL2 RPL37A MAP1LC3B MOBP NAA38 WBP2 NFIA ZNF208 UBL5 RPL11 RPL35 SNX22 HS3ST5 MAP1B MGST3 ST6GALNAC3 LDOC1 SRM APLP2 ANLN RPS6 ELOVL7 CST3 PTMA PGAM1 OCIAD1 TLE4 SEPT4 RAB3IP PPP1R14A PDGFRB SLC24A2 FAM131B TMSB4X CTC-575D19.1 UBE2F ATP1B1 ETFB CALM2 POLR2I PPP2CB GMFB BLOC1S1 FRMD4B FTH1 MYEOV2 PDE1C ENO1 FSTL5 LGI3 ARPC5L AP3S1 AIF1L MAG MT-ND1 FTL MARCKSL1 NUAK1 MSMO1 TSPYL4 ALCAM TBCA ATP6V0D1 GABARAP SLC1A2 THY1 GTF2H2C_2 RPL13A GPR98\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "oligodendrocyte A",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 MBP TMSB4X TF MT-ND1 QKI GPRC5B PTGDS CLDND1 CSDE1 RAB40B SPOCK1 MOBP FTL MT-ND4 PSAP LANCL1 MTRNR2L12 ARPC4 RPL37A MTRNR2L1 ZBTB20 SPP1 CCDC152 ARFGAP2 ABCA8 REPS2 MYRF PLEKHG3 GABARAP FOXO1 DNER PTMA NDFIP2 ZFP36 HSP90AA1 JUND RAPGEF5 EIF1 GPIHBP1 FTH1 ENPP2 CKB EDIL3 RPS27A RAB11A ATP2A2 SERINC1 VAMP2 IL10RA CRYAB CYB5R3 METTL7A BCAS1 SEPT4 APOLD1 TMEM63A COA4 MAL ERBB3 TGOLN2 RP11-597D13.7 SLC25A4 DNM3 EVI2A NDUFA5 MT-CO1 PRKACB ASAP1 SIPA1 MT-ND3 RPS4X RPL35 SYT11 PEBP1 PPP5D1 LAMTOR1 IL4R ARL8A SLC24A2 ATXN10 POMP ATP11C NCDN TBCA FRMD4B MYBPHL KLHL5 EPB41L3 HHATL MT-CO3 TMEM88B TPRG1L LRP4 NFIA PSMA7 PPDPF PIP4K2A NECAB1 PPP2R2C DPYSL2 MTG1 MT-ATP6 OCIAD1 RHOA RTN1 TMEM144 MTRNR2L6 RPL21 TRIM59 RPL41 RP11-219A15.1 SERPINE2 NR1I3 GTF2H2C_2 SYTL2 RAB3B\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "oligodendrocyte A",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 MT-CO1 MT-ND1 MT-CO2 MT-ATP6 MT-ND4 PTMA MT-CYB MT-ND2 TSC22D4 MT-CO3 SPP1 TF SCD MT-ND3 ERBB3 RAPGEF5 ZNF385D RP11-597D13.7 APOD S100A1 CTSD CDC42SE2 PTGDS PHPT1 APLP1 RTN4 MBP CRYAB DNAJC6 MORF4L2 TMEM144 MTRNR2L1 SLC1A3 CARNS1 CLDND1 DPYSL2 SYT11 PREPL CALM2 CLSTN1 KIAA1755 MT2A CADM2 CALM1 NFIA LRP4 METTL23 RPL37A MTCH1 TPPP MRPL51 SPOCK1 LAMA2 ALCAM PET100 MTRNR2L8 ITM2B RAB7A ETFB TIMP2 ACTB MAP2K2 SLC9A6 SERF2 PITPNA MYRF NKX6-2 MLF2 NUTF2 NDRG3 NDRG2 CLIC4 FIS1 MTRNR2L12 RPL35 UBC TTYH2 CHN1 RPS15 FTL PRUNE2 NR1I3 PPP1R7 DYNLL1 TMSB4X OAT CDH8 TXNIP PRNP OPALIN POLR2L ZCCHC24 CHP1 RTN3 GLO1 COX6B1 SOX2 KIF3C GDE1 ATP6V1B2 MAG PPP3CA NDUFV1 CNP CLMN ITM2A GABARAPL2 CKB SEPP1 GPRC5B MRPL55 RPS27A UQCRC1 ZBTB20 PRKACB PDK4 NKIRAS1 TUBA1A DOCK10 LANCL1 HEPACAM GAPDH COX6C CBX6 PEX5L CXXC4 SUB1 HMGCS1 TBCB RP11-219A15.1 GABARAP CFH TBC1D15 DNAJC21 RPL13A MIF\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "oligodendrocyte A",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 MBP TF SEPP1 MOBP CLDND1 HSP90AA1 HSP90AB1 PRNP ARPP19 DHCR24 CTSD TXNIP MT-ND2 CRYAB TMEM63A ACTB NFIA QKI RP11-219A15.1 TLE4 CTC-575D19.1 RAP2A APOD PTMA CLDN11 S100B CA2 PPP1R14A COX6C ATP2A2 SNCA ASAP2 PCDHA4 SLC25A4 CMTM5 ERBB3 PPDPF MEGF10 FTH1 QDPR ARHGDIA VAMP2 GNB1 SYT11 GRM3 RTKN TOLLIP PLIN3 DPP6 RPS15 STMN4 TOMM20 RPS28 MRPS21 PAQR8 GPRC5B C19ORF70 ATP5I CPLX3 FUNDC1 CTNNA3 MT-ND3 GNAQ SEMA5A MAP1A BIRC5 ZBTB20 SLC24A2 COX4I1 PIEZO2 UBC CKB RPL35 SEZ6L2 HSPA2 NOTCH1 MT-ND4 UBA52 SCD TUBB4A TSPO AK5 ZCCHC24 SGCD PEBP1 GHITM TMEM144 RP11-111M22.2 TSC22D4 TMSB10 HHATL ALCAM FAM127A PTGDS SPTBN1 S1PR5 GUK1 FAM96B UBQLN2 MTUS1 RPL13 RNASE1 RAB40B TUBA1A GPIHBP1 GAPDH PHB UHMK1 MT-CO2 RAB4A ACTG1 NEK7 RAB3B SYTL2 ZNF385D\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "oligodendrocyte A",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MBP PLP1 MOBP MT-CO1 RTN4 TF CNDP1 TMEM144 MT-ND4 MT-CO3 GPRC5B ATP1B1 CLU CLDN11 PSAP LGI3 PTN CLDND1 CTSD DPYSL2 MT-CO2 ARL6IP5 TBC1D15 CALM2 CRYAB TUBA1A ZCCHC24 SPP1 BIRC5 RAB3B BCAS1 SQLE PI4KA PRNP ATP6V1E1 EPS8 NFE2L1 TKT NDUFV1 OLIG2 STK39 PIP4K2A TMEM63A MTCH1 ITM2B PROX1 ATP6V0E2 MAGEH1 PPP2CB SPOCK3 PHYHIP NKX6-2 UQCRC1 ACTB MT-ND2 CDH19 PGRMC1 GLUL MAP7D1 MTRNR2L12 KIFAP3 SCD CNP PPIA ACP1 EDF1 PSMD2 RTN3 GRAMD3 CALM1 SPTBN1 FTL PRUNE2 PTPRS FRMD4B FOLH1 TXNIP CMTM5 MORF4L1 APP PSD3 GSTO1 PCDH17 IDH3A NDN PRR18 PPP1R14A CLMN BCAT1 LMBRD2 PTGDS MAPRE2 IDS TNS1 PADI2 RPS2 CTNND2 PREX2 PTMA NRGN S1PR5 ANLN ERMN PTGES3 WIPF1 PCBP1 HEPACAM RP11-404G16.2 CADM2 KIF21A SPATA13 TMEM151A EDIL3 WASF1 TPPP VAMP2 RAPGEF5 RRM2B HNRNPA1P40 FTH1 RPS27A RPL26\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "oligodendrocyte A",
"role": "assistant"
}
] |
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