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https://openalex.org/W2758859773
https://europepmc.org/articles/pmc5619715?pdf=render
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Significance of chronic toxoplasmosis in epidemiology of road traffic accidents in Russian Federation
PloS one
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RESEARCH ARTICLE Significance of chronic toxoplasmosis in epidemiology of road traffic accidents in Russian Federation Ekaterina V. Stepanova1, Anatoly V. Kondrashin1, Vladimir P. Sergiev2, Lola F. Morozova2, Natalia A. Turbabina1, Maria S. Maksimova1, Alexey I. Brazhnikov3, Sergei B. Shevchenko1, Evgeny N. Morozov2,4* 1 Martsinovsky Institute of Medical Parasitology, Tropical and Vector Borne Diseases, I.M. Sechenov First Moscow State Medical University, Moscow, Russian Federation, 2 Department of Tropical Medicine and Parasitic Diseases, I.M. Sechenov First Moscow State Medical University, Moscow, Russian Federation, 3 Department of Epidemiology and Evidence-based Medicine, I.M. Sechenov First Moscow State Medical University, Moscow, Russian Federation, 4 Department of Tropical, Parasitic Diseases and Disinfectology, Russian Medical Academy of Continuous Professional Education, Moscow, Russian Federation a1111111111 a1111111111 a1111111111 a1111111111 a1111111111 * emorozov@mail.ru * emorozov@mail.ru Editor: Adriana Calderaro, Universita degli Studi di Parma, ITALY Copyright: © 2017 Stepanova et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Abstract Studies carried out in Moscow residents have revealed that the prevalence of chronic toxo- plasmosis is very close to those in countries of Eastern and Central Europe. Our findings also demonstrated a statistically significant relationship between the rate of traffic accidents and the seroprevalence of chronic toxoplasmosis in drivers who were held responsible for accidents. The latter was 2.37 times higher in drivers who were involved in road accidents compared with control groups. These results suggest that the consequences of chronic toxoplasmosis (particularly a slower reaction time and decreased concentration) might con- tribute to the peculiarities of the epidemiology of road traffic accidents in the Russian Feder- ation and might interfere with the successful implementation of the Federal Programme named “Increase road traffic safety”. Suggestions for how to address overcome this problem are discussed in this paper. OPEN ACCESS Citation: Stepanova EV, Kondrashin AV, Sergiev VP, Morozova LF, Turbabina NA, Maksimova MS, et al. (2017) Significance of chronic toxoplasmosis in epidemiology of road traffic accidents in Russian Federation. PLoS ONE 12(9): e0184930. https:// doi.org/10.1371/journal.pone.0184930 Editor: Adriana Calderaro, Universita degli Studi di Parma, ITALY Introduction Road traffic accidents (RTAs) are very serious health and social problems worldwide. In the Russian Federation, this problem is particularly acute compared with other countries that have similar levels of social and economic development. According to the WHO Road Safety Esti- mations, the road traffic death rate (per 100000 population) in the Russian Federation was 18.9 in 2013, which was two times lower than that in many developing countries [1] but much higher compared with European countries such as the Netherlands (3.4), Germany (4.3), Fin- land (4.8), and the Czech Republic (6.1) [2]. Data Availability Statement: All relevant data are within the paper and its Supporting Information file. Funding: The authors received no specific funding for this work. The demographic burden of RTA and their consequences is enormous. According to the State Statistical Bureau of Russia, during the period 1985–2012, the total number of RTAs in the Russian Federation exceeded 5 million, with more than 850000 people dead. More than 6 Competing interests: The authors have declared that no competing interests exist. PLOS ONE | https://doi.org/10.1371/journal.pone.0184930 September 28, 2017 1 / 9 Toxoplasmosis in epidemiology of road accidents in Russia million suffered injuries of various degrees of severity. Major trauma, including concomitant injuries, multi-organ injuries, and composite fractures, represents more than 60% of all inju- ries and leads to the handicap of more than 6000 persons annually. Reports from the Ministry of Health reveal that the total number of fatal cases due to RTAs is 12 times higher and that the number of disabilities is 6–7 times higher compared with that among other causes of injury. The annual economic burden due to the RTA in the Russian Federation is estimated at approximately 1 trillion rubles (US $ 16.7 billion as of 20.12.2016). The government of the Russian Federation considers road safety to be one of the most important goals for social and economic development. An appreciation and concern for the magnitude of the problem is reflected in the allocation of considerable amount of funds to establish and implement various activities within the framework of the Federal Program “Increase road traffic safety, 2013–2020” under the lead agency Road Safety Commission of the Government of Russian Federation. Introduction The aim of the program, at the cost of almost 36 tril- lion rubles (US $36 billion), is the annual reduction of the number of fatal cases due to RTA by 29% (not more than 8000 cases) by 2020 compared to 2012. Prior to launching the Program, the epidemiological peculiarities of RTAs in the Russian Federation were ascertained and appear to be determined by interaction of several factors. One of the most important factors was believed to be the discordance between the ever-increasing intensity of road traffic (partic- ularly for the last 15–20 years), followed by the tempo of the construction of new roads and the proper maintenance of the existing road network. It was also found that the violation of the National rules of the road was the cause of almost 85% of all RTAs, of which drivers were responsible for 70%-75% [3]. For 55% of the RTAs, the cause was exceeding the speed limit and breaking the rules at the regulated intersections (30%). A considerable number of road accidents have been committed by drivers under the influence of alcohol or drugs. Road traffic deaths involving alcohol represent 8% of all deaths on the roads [4]. However, one of the factors contributing to the peculiarities of the epidemiology of RTAs in Russia was not considered. This factor is the con- sequences of chronic toxoplasmosis among persons involved in RTAs. This was not analyzed, although a number of publications on the subject have been available abroad since the mid- 1990s [5, 6]. Unlike its acute form, chronic toxoplasmosis is not accompanied by manifested clinical symptoms of the disease [7]. The chronic form of toxoplasmosis in the Russian Federation is still considered a phenomenon of asymptomatic carriage, and clinicians do not consider it a health problem. A previous study revealed that the prevalence of latent toxoplasmosis in the Russian Federation is 5%-7% in Republic Saha and Omsk province, both of which are in East- ern Siberia [8]. Investigations in other parts of the country have not been carried out. Worldwide interest and concern for the emerging problem of toxoplasmosis, especially its chronic form, have been demonstrated over the last 15–20 years, when new dimensions of the disease were established. The results of monitoring Toxoplasma-infected persons have revealed behavioral changes among them compared with uninfected persons. The intensity of such changes is closely correlated with the duration of chronic toxoplasmosis [6,9,10]. PLOS ONE | https://doi.org/10.1371/journal.pone.0184930 September 28, 2017 Toxoplasmosis in epidemiology of road accidents in Russia Table 1. Prevalence of chronic toxoplasmosis among the residents of Moscow city (Russian Federation), 2015. Group Examined Positive results (ELISA test) Absolute number Percent (%) Total number 1272 323 25.39 Men 497 120 24.14 Women 775 203 26.19 https://doi.org/10.1371/journal.pone.0184930.t001 alence of chronic toxoplasmosis among the residents of Moscow city (Russian Federation), 2015. Table 1. Prevalence of chronic toxoplasmosis among the residents of Moscow city (Russian Federation and Mexico [16,17,18,19]. Subsequent observations among toxoplasmosis-infected persons conducted in various countries have confirmed significant behavioral changes, including per- sonality changes, IQ loss and altered psychomotor activity, including an increased risk of involvement in road traffic accidents [10, 11,13]. and Mexico [16,17,18,19]. Subsequent observations among toxoplasmosis-infected persons conducted in various countries have confirmed significant behavioral changes, including per- sonality changes, IQ loss and altered psychomotor activity, including an increased risk of involvement in road traffic accidents [10, 11,13]. Thus, the objectives of our study were a) to determine the prevalence of chronic toxoplas- mosis in the city and region of Moscow and b) to establish the probable role of the disease in the epidemiology of RTAs in the Russian Federation to facilitate the successful implementation of the Federal Program. Introduction It appears that the mechanism that determines the personality changes is associated with an increase in the production of the neurotransmitter dopamine, affecting a person’s motor activity, aggres- sion and social behavior [11, 12]. Once in the nerve or inside the muscle tissue, the parasite forms cysts that cause the development of chronic toxoplasmosis [13,14]. It was shown that Toxoplasma localizes in the nerve cells of the brain and stimulates the production of dopamine. This effect could be responsible for prolongation of person’s reaction time and ability to con- centrate [15] and also for an increased risk of traffic and working place incidents, as convinc- ingly demonstrated in epidemiological studies in the Czech Republic, the Republic of Turkey, PLOS ONE | https://doi.org/10.1371/journal.pone.0184930 September 28, 2017 2 / 9 Methods The study was performed at the Sechenov First Moscow State Medical University and the Mos- cow Sklifosovskii Institute of Emergency Medicine during 2015. To establish the general prevalence of chronic toxoplasmosis among residents of Moscow city, examinations were carried out among persons attending the Outpatient Department at the Clinical Center of the Sechenov First Moscow State Medical University. No special criteria were selected for examination in terms of age, sex and occupation. A total of 1272 persons were examined (Table 1). To address the second objective, we carried out an analytical epidemiological “case-control” study represented by two groups: experimental and control. The experimental group consisted of persons in possession of a valid driving license who were hospitalized because of a road traf- fic accident for which they were responsible. All persons in the experimental group were patients of the Sklifosovsky Medical Emergency Institute, Moscow. The criteria for inclusion were a) proof that the admitted person was driving at the time of the accident, b) evidence that their actions/behavior had led to the occurrence of the accident; and c) age from 18–45 years. The criterion for exclusion was driving at the time of an accident under the influence of alcohol/drugs. A total of 100 persons constituted the experimental group, with 65 men and 35 women (Tables 2 and 3). The control group consisted of 152 healthy persons aged 18–45 years (82 men and 70 The control group consisted of 152 healthy persons aged 18–45 years (82 men and 70 women), who were undergoing routine medical examinations at the Clinical Centre of Seche- nov University. women), who were undergoing routine medical examinations at the Clinical Centre of Seche- nov University. Participants in the experimental and control groups were informed about the purposes of the study, and informed consent was obtained before enrollment in the study. munoglobulins M and G to Toxoplasma gondii in the experimental group and the control group. Table 2. Comparative prevalence of immunoglobulins M and G to Toxoplasma gondii in the experimental group and the control group. Group Examined Absolute number Positive results (%) Odds ratio C.I.95 p-values IgM IgG Case 100 0 45 45.00 2.37 1.34–4.2 0.001 Control 152 0 39 25.66 https://doi.org/10.1371/journal.pone.0184930.t002 PLOS ONE | https://doi.org/10.1371/journal.pone.0184930 September 28, 2017 3 / 9 Table 2. Comparative prevalence of immunoglobulins M and G to Toxoplasma gondii in the experimental group and the control group. PLOS ONE | https://doi.org/10.1371/journal.pone.0184930 September 28, 2017 Ethical considerations The study was approved by the Research Ethics Board of Health of the Sechenov First Moscow State Medical University (protocol №04–13, 10.04.2013). Participants in the experimental and control groups were informed about the purposes of the study, and informed consent was obtained before enrollment in the study in verbal form. Toxoplasmosis in epidemiology of road accidents in Russia Table 3. Comparative gender prevalence of chronic toxoplasmosis in the experimental group and the control group. Group Experimental group Control group Odds ratio C.I.95 p-values Examined Positive results Examined Positive results Absolute number Percent (%) Absolute number Percent (%) Men 65 29 44.61 82 22 26.83 2.2 1.04–4.66 0.02 Women 35 16 45.71 70 17 24.28 2.63 1.02–6.8 0.02 https://doi.org/10.1371/journal.pone.0184930.t003 Table 3. Comparative gender prevalence of chronic toxoplasmosis in the experimental group and the contr All study patients were tested for the presence of IgG- and IgM-specific antibodies to Toxo- plasma gondii. The determination of specific immunoglobulin G and M in the blood serum of the study groups (experimental and control) were determined using “Vector-Toxo of IgG” (Vector-Best, Novosibirsk, Russian Federation) and “Vector Toxo-IgM” enzyme-linked immunosorbent assay (ELISA) test kits, produced by JSC “VECTOR-BEST.” The indicator of chronic toxoplasmosis in a patient was the presence of IgG in the absence of IgM [13]. The statistical significance of the results in the experimental and control groups was obtained using the χ criterion, and the odds ratio (OR) was calculated with a level of reliability not less than 95%. The Statistical Package EpiInfo Version was employed for calculations. Additionally, we used the Pearson Correlation, Partial Correlation, and Mantel-Haenszel Common Odds Ratio Estimate. Methods Group Examined Absolute number Positive results (%) Odds ratio C.I.95 p-values IgM IgG Case 100 0 45 45.00 2.37 1.34–4.2 0.001 Control 152 0 39 25.66 omparative prevalence of immunoglobulins M and G to Toxoplasma gondii in the experimental group and th PLOS ONE | https://doi.org/10.1371/journal.pone.0184930 September 28, 2017 3 / 9 PLOS ONE | https://doi.org/10.1371/journal.pone.0184930 September 28, 2017 Results and discussion Thus, both our results and those obtained abroad suggest the presence of a link between the incidence of chronic toxoplasmosis and road traffic accidents. The role of the consequences of chronic toxoplasmosis in the changes of the personality profile of an infected person has been well established. A slower reaction time and decreased concentration are most remarkable features among the changes in an infected person [6,23]. These changes are particularly important while driving [16]. The results of studies carried out among 3890 military drivers (men) in the Czech Republic revealed that persons with high titers of Toxoplasma antibodies had a 6-fold higher frequency of accidents compared with uninfected persons [24]. It is believed that the mechanism of such phenomena in general is related to the modulation of dopamine levels (increased or decreased) as a result of the presence of the parasite in brain cells [25,26]. The consequences of such modulation can be seen in the changing behavior in affected individuals, with marked sex differences and similarities. Men with chronic toxoplas- mosis have higher and women lower concentrations of testosterone [15]. The direction of toxoplasmosis-associated shift in intelligence, extroversion, suspiciousness, strength of super- ego, and self-sufficiency differ between men and women. However, no differences in the direc- tion of such shifts were observed in consciousness, novelty seeking, and the reaction time impairment and these changes could result in a higher risk of road traffic accidents [5,6,14,27]. The data in Table 3 show that the effect of toxoplasmosis was significant and similar for men (OR = 2.2, CI95 = 1.04–4.66, p<0.02) and women (OR = 2.6, CI95 = 1.02–6.8,p<0.02). Similar prevalence of seropositive subjects was found in men and women and this was true both in the experimental and the control group despite the fact that the prevalence of toxoplas- mosis was about two times higher in the experimental group. To assess the possible confounding effects of sex, we performed also the Mantel-Haenzel test. The OR adjusted for sex was 2.35 CI95 1.37–4.03. It appears that similarities in the behavioral changes of infected men and women driving on the roads determines “aggressive driving,” the neglect of driving rules, and ignoring pedestri- ans. In conjunction with inadequate road conditions, which currently prevail in Russia, these factors might contribute to an increased risk of road traffic accidents. As of today, the Federal Program is in its 4th year of implementation (2013–2016). Results and discussion The prevalence of chronic toxoplasmosis in the residents of Moscow city is presented in Table 1. These values were considerably higher (25.39%, n = 1272) in our study than those obtained earlier in Eastern Siberia in Russia [8]. This could be attributed to the differences in the living conditions and food preferences of the local population. However, our findings are quite close to the results obtained in Austria, Croatia, Slovenia, and Switzerland [20,21,22]. The results of the examination of blood serum in the experimental and control groups are presented in Tables 2 and 3. The results of the examination of blood serum in the experimental and control groups are presented in Tables 2 and 3. As seen in Table 2, the immunoglobulin M was absent in both groups, whereas immuno- globulin G was present in 45% of those tested in the experimental group compared to 26% in the control group. The absence of the immunoglobulin IgM in conjunction with the presence of IgG suggests the presence of persons with exclusively the chronic form of toxoplasmosis in both the experimental and control groups. It was found that the number of seropositive sub- jects with IgG in the experimental group was significantly higher than that in the control group. Thus, among the persons involved in traffic accidents who were responsible for their occurrence, the incidence of cases with chronic toxoplasmosis was more than twice that in the control group. The results of our studies are quite close to those obtained in the Czech Republic, where it was found that the risk for traffic accidents in subjects with chronic toxoplasmosis was 2.65 times (2.37 in our study) higher than in the control group [16]. 4 / 9 PLOS ONE | https://doi.org/10.1371/journal.pone.0184930 September 28, 2017 Toxoplasmosis in epidemiology of road accidents in Russia In Turkey, which has a traffic toll of approximately 7500 persons annually, similar epidemi- ological studies revealed that the risk of accidents in the experimental group was between 2 and 4 times higher than that in the control group [17,18]. In Turkey, which has a traffic toll of approximately 7500 persons annually, similar epidemi- ological studies revealed that the risk of accidents in the experimental group was between 2 and 4 times higher than that in the control group [17,18]. PLOS ONE | https://doi.org/10.1371/journal.pone.0184930 September 28, 2017 Results and discussion During that period, the proportion of the federal and regional network of roads that fully correspond to the national standards has increased from 39% in 2013 to 71% in 2016. However, an appre- ciable improvement of the road’s standards has not been accompanied by an expected reduc- tion of the total number of RTA and its consequences, as exemplified by the following data. For example, in 2015, there were total of 151000 serious RTAs, with 19000 fatal cases. Approxi- mately 190000 persons were injured with traumas of various degrees of severity. Over the first 9 months of 2016, the total reported number of RTAs was more than 133000, in which 16000 persons died and 168000 persons were injured. Thus, these data indicate that the “human fac- tor”, drunk driving, a low rate of seat-belt wearing, excess speed, a violation of overtaking rules, inadequate behavior in extreme situations, not keeping a stipulated distance between vehicles while driving and the probable consequences of chronic toxoplasmosis—continue to play extremely important roles in the current epidemiology of RTAs in the Russian Federation. The limited scale of our studies did not allow us to precisely calculate the number of RTAs that were directly related to chronic toxoplasmosis. However, one cannot exclude the probability that the consequences of the disease might act in conjunction with other factors, for example, with the presence of alcohol in the blood of the person who caused the RTA. Another factor As of today, the Federal Program is in its 4th year of implementation (2013–2016). During that period, the proportion of the federal and regional network of roads that fully correspond to the national standards has increased from 39% in 2013 to 71% in 2016. However, an appre- ciable improvement of the road’s standards has not been accompanied by an expected reduc- tion of the total number of RTA and its consequences, as exemplified by the following data. For example, in 2015, there were total of 151000 serious RTAs, with 19000 fatal cases. Approxi- mately 190000 persons were injured with traumas of various degrees of severity. Over the first 9 months of 2016, the total reported number of RTAs was more than 133000, in which 16000 persons died and 168000 persons were injured. Results and discussion It should be kept in mind, however, that the solution to chronic toxoplasmosis with respect It should be kept in mind, however, that the solution to chronic toxoplasmosis with respect to road safety lies in the development of efficient specific drugs targeting parasitic cysts. Strength and limitations of the study The results of this study provide very useful information that can be used to educate physicians in the Russian Federation who are still unaware of the consequences of chronic toxoplasmosis. This information may also be used while assessing the progress of the Federal Program on road safety in Russia. There are some confounders in our study that might have interfered with the reliability of the obtained results. This study is limited in terms of the generalizability of the findings, as it examined the inhabitants of Moscow city only. With respect to the overall prevalence of chronic toxoplasmosis among the residents of Moscow city, no data on the territorial distribu- tion within the study area were ascertained. The availability of such data might provide an idea of whether the distribution of the infection is diffused or focal. With respect to the comparative prevalence of chronic toxoplasmosis in the experimental and control groups, the limiting fac- tors could be considered to be as follows. First, the study was confined to drivers who were held responsible for RTAs. The role of pedestrians involved in RTAs and their responsibility were not studied. The combined prevalence in drivers and pedestrians might be higher. Sec- ond, the age groups were limited to only those aged 18–45 years. The inclusion of subject older than 45 years of age might increase or decrease the prevalence of chronic toxoplasmosis in both groups. Third, the possibility of different protection against negative effects of toxoplas- mosis in RTAs among the Rh positive and Rh negative subjects was not established. Fourth, the decrease of the risk of traffic accidents during the Toxoplasma infection was not studied. Results and discussion Thus, these data indicate that the “human fac- tor”, drunk driving, a low rate of seat-belt wearing, excess speed, a violation of overtaking As of today, the Federal Program is in its 4th year of implementation (2013–2016). During that period, the proportion of the federal and regional network of roads that fully correspond to the national standards has increased from 39% in 2013 to 71% in 2016. However, an appre- ciable improvement of the road’s standards has not been accompanied by an expected reduc- tion of the total number of RTA and its consequences, as exemplified by the following data. F l i 2015 th t t l f 151000 i RTA ith 19000 f t l A i PLOS ONE | https://doi.org/10.1371/journal.pone.0184930 September 28, 2017 5 / 9 Toxoplasmosis in epidemiology of road accidents in Russia limiting the possibility to exactly quantify the real impacts of latent toxoplasmosis, e.g. to com- pute the attributable risk, is the fact that the results of several studies abroad have demon- strated that th Rh positive subjects, especially the heterozygotes, are protected against many negative effects of toxoplasmosis, including impairment of reaction times [28] and an increased risk of traffic accidents [23]. In addition, the impairment of reaction times increases [23,28] but the risk of traffic accidents decreases with the duration of the Toxoplasma infection [24]. We strongly feel that the results of our studies clearly indicate the necessity to address the consequences of chronic toxoplasmosis in the implementation of the Federal Program on Road Safety in Russian Federation, on par with other factors contributing to the problem of road accidents. One of the possible steps towards solving the problem might be an entry screening for toxoplasmosis in every student in every driving school. Licensed drivers should be tested for toxoplasmosis during routine medical examinations. Considering the magnitude of road accidents involving pedestrians, Special Programs should be developed to prevent road accidents, specifically programs targeting school children. To that effect, negotiations with the national authorities are already in progress. Thus, our experience could be extended to individ- uals who are engaged in other fields of activity, for example, the screening of conscripts and members of the military who drive and manage various military equipment, including aircraft. Acknowledgments The authors are very grateful to the medical personnel of the Sklifosovski Institute for their very valuable assistance during the studies. Author Contributions Conceptualization: Ekaterina V. Stepanova, Anatoly V. Kondrashin, Vladimir P. Sergiev, Evgeny N. Morozov. Data curation: Ekaterina V. Stepanova, Vladimir P. Sergiev, Lola F. Morozova, Evgeny N. Morozov. Formal analysis: Ekaterina V. Stepanova, Lola F. Morozova, Natalia A. Turbabina, Maria S. Maksimova, Alexey I. Brazhnikov. Investigation: Ekaterina V. Stepanova, Lola F. Morozova, Natalia A. Turbabina, Maria S. Maksimova. Methodology: Vladimir P. Sergiev, Alexey I. Brazhnikov, Evgeny N. Morozov. Project administration: Sergei B. Shevchenko. Resources: Sergei B. Shevchenko, Evgeny N. Morozov. Resources: Sergei B. Shevchenko, Evgeny N. Morozov. Supervision: Vladimir P. Sergiev, Evgeny N. Morozov. Supervision: Vladimir P. Sergiev, Evgeny N. Morozov. Validation: Ekaterina V. Stepanova, Vladimir P. Sergiev, Evgeny N. Morozov. Visualization: Ekaterina V. Stepanova, Anatoly V. Kondrashin, Lola F. Morozova. Writing – original draft: Ekaterina V. Stepanova, Evgeny N. Morozov. Writing – review & editing: Anatoly V. Kondrashin, Vladimir P. Sergiev. Conclusions The results of our studies had revealed that frequency of chronic toxoplasmosis among resi- dents of the city and region of Moscow in the Russian Federation is very close to those in many European countries. It was also demonstrated that the statistically significant frequency of chronic toxoplasmosis among drivers, regardless of gender and the responsibility for road PLOS ONE | https://doi.org/10.1371/journal.pone.0184930 September 28, 2017 6 / 9 Toxoplasmosis in epidemiology of road accidents in Russia accidents, was more than 2 times higher compared with that of the control group. The results of our studies are consistent with data from similar studies in other countries. We suggest that the results of our research should be taken into consideration during the implementation of the Federal Road Safety Program. These results show that the effect of latent toxoplasmosis could play a very important role in the epidemiology of road accidents in the Russian Federation. References Folia Parasitol (Praha). 1999; 46: 22–28. 15. Flegr J, Lindova J, Kodym P. Sex-dependent toxoplasmosis-associated differences in testosterone concentration in humans. Parasitology, 2008, 135:427–431. https://doi.org/10.1017/ S0031182007004064 PMID: 18205984 16. Flegr J, Havlicek J, Kodym P, Maly M, Smahel Z. Increased risk of traffic accidents in subjects with latent toxoplasmosis: a retrospective case-control study. BMC Infect Dis. 2002; 2: 11 https://doi.org/10. 1186/1471-2334-2-11 PMID: 12095427 17. Kocazeybek B, Oner YA, Turksoy R, Babur C, Cakan H, Sahip N, et al. Higher prevalence of toxoplas- mosis in victims of traffic accidents suggest increased risk of traffic accident in Toxoplasma-infected inhabitants of Istanbul and its suburbs. Forensic Sci Int. 2009; 187: 103–108. https://doi.org/10.1016/j. forsciint.2009.03.007 PMID: 19356869 18. Yereli K, Balcioglu IC, Ozbilgin A. Is Toxoplasma gondii a potential risk for traffic accidents in Turkey? Forensic Sci Int. 2006; 163: 34–37. https://doi.org/10.1016/j.forsciint.2005.11.002 PMID: 16332418 19. Galvan-Ramirez Mde L, Sanchez-Orozco LV, Rodriguez S, Roig-Melo E, Troyo Sanroman R, Chin- quete E, Armendariz-Borunda J. Seroepidemiology of Toxoplasma gondii infection in drivers involved in road traffic accidents in the metropolitan area of Guadalajara, Jalisco, Mexico. Parasit Vectors, 2013 Oct 11: 6(1):294. https://doi.org/10.1186/1756-3305-6-294 PMID: 24499659 20. Jacquier P, Hohlfeld P, Vorkauf H, Zuber P. [Epidemiology of toxoplasmosis in Switzerland: national study of seroprevalence monitored in pregnant women 1990–1991]. Schweiz Med Wochenschr Suppl. 1995; 65: 29S–38S. PMID: 7716451 21. Lafferty KD. Can the common brain parasite, Toxoplasma gondii, influence human culture? Proc Biol Sci. 2006; 273: 2749–2755. https://doi.org/10.1098/rspb.2006.3641 PMID: 17015323 22. Tenter AM, Heckeroth AR, Weiss LM. Toxoplasma gondii: from animals to humans. Int J Parasitol. 2000; 30: 1217–1258. PMID: 11113252 23. Havlicek J, Gasova ZG, Smith AP, Zvara K, Flegr J. Decrease of psychomotor performance in subjects with latent ’asymptomatic’ toxoplasmosis. Parasitology. 2001; 122: 515–520. PMID: 11393824 24. Flegr J, Klose J, Novotna M, Berenreitterova M, Havlicek J. Increased incidence of traffic accidents in Toxoplasma-infected military drivers and protective effect RhD molecule revealed by a large-scale pro- spective cohort study. BMC Infect Dis. 2009; 9: 72. https://doi.org/10.1186/1471-2334-9-72 PMID: 19470165 25. Webster JP, McConkey GA. Toxoplasma gondii-altered host behaviour: clues as to mechanism of action. Folia Parasitol (Praha). 2010; 57: 95–104. 26. Webster JP, Brunton CF, MacDonald DW. Effect of Toxoplasma gondii upon neophobic behaviour in wild brown rats, Rattus norvegicus. Parasitology. 1994; 109: 37–43. PMID: 8058367 27. Flegr J, Preiss M, Klose J, Havlicek J, Vitakova M, Kodym P. References 1. Rasouli MR, Nouri M, Zarei MR, Saadat S, Rahimi-Movaghar V. Comparison of road traffic fatalities and injuries in Iran with other countries. Chin J Traumatol. 2008; 11: 131–134. PMID: 18507940 2. WHO. WHO Road Safety Estimated Road Trafic Death Rate. 2013. http://www.who.int/gho/road_ safety/mortality/en/. 3. Russian Federation Programme. Increase of safety on the roads. http://www.fcp-pbdd.ru/about_ Programme/problem.php. 4. http://who.int/countries/rus/en. 5. Flegr J, Hrdy I. Influence of chronic toxoplasmosis on some human personality factors. Folia Parasitol (Praha). 1994; 41: 122–126. 1. Rasouli MR, Nouri M, Zarei MR, Saadat S, Rahimi-Movaghar V. Comparison of road traffic fatalities and injuries in Iran with other countries. Chin J Traumatol. 2008; 11: 131–134. PMID: 18507940 2. WHO. WHO Road Safety Estimated Road Trafic Death Rate. 2013. http://www.who.int/gho/road_ safety/mortality/en/. 3. Russian Federation Programme. Increase of safety on the roads. http://www.fcp-pbdd.ru/about_ Programme/problem.php. 5. Flegr J, Hrdy I. Influence of chronic toxoplasmosis on some human personality factors. Folia Parasitol (Praha). 1994; 41: 122–126. 5. Flegr J, Hrdy I. Influence of chronic toxoplasmosis on some human personality factors. Folia Parasitol (Praha). 1994; 41: 122–126. 7 / 9 PLOS ONE | https://doi.org/10.1371/journal.pone.0184930 September 28, 2017 Toxoplasmosis in epidemiology of road accidents in Russia 6. Flegr J, Zitkova S, Kodym P, Frynta D. Induction of changes in human behaviour by the parasitic proto- zoan Toxoplasma gondii. Parasitology. 1996; 113: 49–54 PMID: 8710414 7. Flegr J, Prandota J, Sovickova M, Israili ZH. Toxoplasmosis—a global threat. Correlation of latent toxo- plasmosis with specific disease burden in a set of 88 countries. PLoS One. 2014; 9: e90203. https://doi. org/10.1371/journal.pone.0090203 PMID: 24662942 8. Dolgikh TI, Zaparii NS, Kadtsyna TV, Kalitin AV. [Epidemiological and clinicoimmunological monitoring of toxoplasmosis in the Omsk region]. Med Parazitol (Mosk). 2008: 19–22. 9. Sergiev V. Parasites induced behavioral changes of hosts, including man. J Microb Epidem Immuno- biol. 2010; 3: 108–114. 10. Sergiev V. Parasites induced management of behavior of mammals including man. Med Parasitol. 2010; 3: 48–53. 11. Flegr J. Influence of latent Toxoplasma infection on the human personality, physiology, and morphol- ogy: The Toxoplasma-human model in studying the manipulation hypothesis–pros and cons. Journal of experimental Biology, 2013, 216:127–133 https://doi.org/10.1242/jeb.073635 PMID: 23225875 12. Sergiev V, Filatov N. Man and his parasites: competition and molecular interaction. Nauka Publishers, Moscow; 2010. 13. Sergiev V. Parasitic diseases of man (Protozooses and Helminths). Foliant Publishers, St.-Petersburg; 2008. 14. Flegr J, Havlicek J. Changes in the personality profile of young women with latent toxoplasmosis. 28. Novotna M, Havlicek J, Smith AP, Kolbekova P, Skallova A, Klose J, et al. Toxoplasma and reaction time: role of toxoplasmosis in the origin, preservation and geographical distribution of Rh blood group polymorphism. Parasitology. 2008; 135: 1253–1261. https://doi.org/10.1017/S003118200800485X PMID: 18752708 PLOS ONE | https://doi.org/10.1371/journal.pone.0184930 September 28, 2017 Toxoplasmosis in epidemiology of road accidents in Russia References Decreased level of psychobiological factor novelty seeking and lower intelligence in men latently infected with the protozoan parasite Toxoplasma gondii Dopamine, a missing link between schizophrenia and toxoplasmosis? Biol Psychol. 2003; 63: 253–268. PMID: 12853170 8 / 9 PLOS ONE | https://doi.org/10.1371/journal.pone.0184930 September 28, 2017 Toxoplasmosis in epidemiology of road accidents in Russia 9 / 9
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English
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Long-lived sterile neutrinos at the LHC in effective field theory
˜The œJournal of high energy physics/˜The œjournal of high energy physics
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Received: November 13, 2020 Accepted: January 29, 2021 Published: March 15, 2021 Received: November 13, 2020 Accepted: January 29, 2021 Published: March 15, 2021 Jordy de Vries,a,b Herbert K. Dreiner,c Julian Y. G¨unther,c Zeren Simon Wangd,e an Guanghui Zhoua Jordy de Vries,a,b Herbert K. Dreiner,c Julian Y. G¨unther,c Zeren Simon Wangd,e an Guanghui Zhoua aAmherst Center for Fundamental Interactions, Department of Physics, University of Massachusetts, Amherst, MA 01003, U.S.A. bRIKEN BNL Research Center, Brookhaven National Laboratory, Upton, NY 11973-5000, U.S.A. cBethe Center for Theoretical Physics & Physikalisches Institut der Universit¨at Bonn, Nußallee 12, 53115 Bonn, Germany dDepartment of Physics, National Tsing Hua University, Hsinchu 300, Taiwan eAsia Pacific Center for Theoretical Physics (APCTP), Headquarters San 31, Hyoja-dong, Nam-gu, Pohang 790-784, South Korea E-mail: jdevries@umass.edu, dreiner@uni-bonn.de, guenther@physik.uni-bonn.de, wzs@mx.nthu.edu.tw, gzhou@umass.edu Jordy de Vries,a,b Herbert K. Dreiner,c Julian Y. G¨unther,c Zeren Simon Wangd,e and Guanghui Zhoua aAmherst Center for Fundamental Interactions, Department of Physics, University of Massachusetts, Amherst, MA 01003, U.S.A. bRIKEN BNL Research Center, Brookhaven National Laboratory, Upton, NY 11973-5000, U.S.A. cBethe Center for Theoretical Physics & Physikalisches Institut der Universit¨at Bonn, Nußallee 12, 53115 Bonn, Germany dDepartment of Physics, National Tsing Hua University, Hsinchu 300, Taiwan eAsia Pacific Center for Theoretical Physics (APCTP), Headquarters San 31, Hyoja-dong, Nam-gu, Pohang 790-784, South Korea E-mail: jdevries@umass.edu, dreiner@uni-bonn.de, guenther@physik.uni-bonn.de, wzs@mx.nthu.edu.tw, gzhou@umass.edu cBethe Center for Theoretical Physics & Physikalisches Institut der Universit¨at Bonn, Nußallee 12, 53115 Bonn, Germany dDepartment of Physics, National Tsing Hua University, Hsinchu 300, Taiwan eAsia Pacific Center for Theoretical Physics (APCTP), Headquarters San 31, Hyoja-dong, Nam-gu, Pohang 790-784, South Korea E-mail: jdevries@umass.edu, dreiner@uni-bonn.de, E-mail: jdevries@umass.edu, dreiner@uni-bonn.de, guenther@physik.uni-bonn.de, wzs@mx.nthu.edu.tw, gzhou@umass.edu Abstract: We study the prospects of a displaced-vertex search of sterile neutrinos at the Large Hadron Collider (LHC) in the framework of the neutrino-extended Standard Model Effective Field Theory (νSMEFT). The production and decay of sterile neutrinos can proceed via the standard active-sterile neutrino mixing in the weak current, as well as through higher-dimensional operators arising from decoupled new physics. If sterile neu- trinos are long-lived, their decay can lead to displaced vertices which can be reconstructed. We investigate the search sensitivities for the ATLAS/CMS detector, the future far-detector experiments: AL3X, ANUBIS, CODEX-b, FASER, MATHUSLA, and MoEDAL-MAPP, and at the proposed fixed-target experiment SHiP. We study scenarios where sterile neutrinos are pre- dominantly produced via rare charm and bottom mesons decays through minimal mixing and/or dimension-six operators in the νSMEFT Lagrangian. We perform simulations to determine the potential reach of high-luminosity LHC experiments in probing the EFT operators, finding that these experiments are very competitive with other searches. Keywords: Phenomenological Models Keywords: Phenomenological Models ArXiv ePrint: 2010.07305 Open Access, c⃝The Authors. Long-lived sterile neutrinos at the LHC in effective field theory JHEP03(2021)148 JHEP03(2021)148 Jordy de Vries,a,b Herbert K. Dreiner,c Julian Y. G¨unther,c Zeren Simon Wangd,e and Guanghui Zhoua aAmherst Center for Fundamental Interactions, Department of Physics, University of Massachusetts, Amherst, MA 01003, U.S.A. bRIKEN BNL Research Center, Brookhaven National Laboratory, Upton, NY 11973-5000, U.S.A. cBethe Center for Theoretical Physics & Physikalisches Institut der Universit¨at Bonn, Nußallee 12, 53115 Bonn, Germany dDepartment of Physics, National Tsing Hua University, Hsinchu 300, Taiwan eAsia Pacific Center for Theoretical Physics (APCTP), Headquarters San 31, Hyoja-dong, Nam-gu, Pohang 790-784, South Korea E-mail: jdevries@umass.edu, dreiner@uni-bonn.de, guenther@physik.uni-bonn.de, wzs@mx.nthu.edu.tw, gzhou@umass.edu Jordy de Vries,a,b Herbert K. Dreiner,c Julian Y. G¨unther,c Zeren Simon Wangd,e and Guanghui Zhoua Open Access, c⃝The Authors. Article funded by SCOAP3. A Two-body sterile neutrino production and decay processes A.1 Charged currents A.2 Sterile neutrino decays into neutral pseudoscalar mesons 38 A.2 Sterile neutrino decays into neutral pseudoscalar mesons A.3 Sterile neutrino decays into neutral vector mesons B Sterile neutrino production in three-body decays 40 B.1 Automizing three-body phase space integral calculations 4 B.2 Definition of three-body decay form factors B.2 Definition of three-body decay form factors C Physical parameters, decay constants, and form factors JHEP03(2021)148 C.1 Form factors for B(s) →M′ P C.2 Form factors for D →M′ P C.3 Form factors for B(s) and D decaying into M′ V C.4 The semi-leptonic decay of Ds Jordy de Vries,a,b Herbert K. Dreiner,c Julian Y. G¨unther,c Zeren Simon Wangd,e an Guanghui Zhoua Article funded by SCOAP3. Open Access, c⃝The Authors. Article funded by SCOAP3. Jordy de Vries,a,b Herbert K. Dreiner,c Julian Y. G¨unther,c Zeren Simon Wangd,e an Guanghui Zhoua https://doi.org/10.1007/JHEP03(2021)148 Contents 1 Introduction 1 2 Standard model effective field theory extended by sterile neutrinos 3 2.1 The effective neutrino Lagrangian 3 2.2 Rotating to the neutrino mass basis 6 3 Production of sterile neutrinos 8 3.1 Sterile neutrino production in minimal models 8 3.2 Sterile neutrino production from higher-dimensional operators 8 4 Decay of sterile neutrinos 9 4.1 Sterile neutrino decays in minimal models 9 4.2 Sterile neutrino decays from higher-dimensional operators 12 5 Theoretical scenarios 12 6 Collider and fixed-target analysis 14 6.1 SHiP 16 6.2 Experiments at the LHC 17 6.2.1 FASER 17 6.2.2 MATHUSLA 18 6.2.3 ANUBIS 19 6.2.4 CODEX-b 19 6.2.5 MoEDAL-MAPP 19 6.2.6 AL3X 19 6.2.7 ATLAS 20 6.3 Monte-Carlo simulation 21 7 Numerical results 22 7.1 The minimal scenario 23 7.2 Flavor benchmark 1 25 7.3 Flavor benchmark 2 27 7.4 Flavor benchmark 3 28 7.5 Flavor benchmark 4 30 7.6 Flavor benchmark 5 31 8 Discussion and comparison with other probes 32 Contents 1 Introduction 1 2 Standard model effective field theory extended by sterile neutrinos 3 2.1 The effective neutrino Lagrangian 3 2.2 Rotating to the neutrino mass basis 6 3 Production of sterile neutrinos 8 3.1 Sterile neutrino production in minimal models 8 3.2 Sterile neutrino production from higher-dimensional operators 8 4 Decay of sterile neutrinos 9 4.1 Sterile neutrino decays in minimal models 9 4.2 Sterile neutrino decays from higher-dimensional operators 12 5 Theoretical scenarios 12 6 Collider and fixed-target analysis 14 6.1 SHiP 16 6.2 Experiments at the LHC 17 6.2.1 FASER 17 6.2.2 MATHUSLA 18 6.2.3 ANUBIS 19 6.2.4 CODEX-b 19 6.2.5 MoEDAL-MAPP 19 6.2.6 AL3X 19 6.2.7 ATLAS 20 6.3 Monte-Carlo simulation 21 7 Numerical results 22 7.1 The minimal scenario 23 7.2 Flavor benchmark 1 25 7.3 Flavor benchmark 2 27 7.4 Flavor benchmark 3 28 7.5 Flavor benchmark 4 30 7.6 Flavor benchmark 5 31 8 Discussion and comparison with other probes 32 9 C l i 34 JHEP03(2021)148 8 Discussion and comparison with other probes 9 Conclusions – i – A Two-body sterile neutrino production and decay processes 36 A.1 Charged currents 36 A.2 Sterile neutrino decays into neutral pseudoscalar mesons 38 A.3 Sterile neutrino decays into neutral vector mesons 39 B Sterile neutrino production in three-body decays 40 B.1 Automizing three-body phase space integral calculations 40 B.2 Definition of three-body decay form factors 42 C Physical parameters, decay constants, and form factors 42 C.1 Form factors for B(s) →M′ P 43 C.2 Form factors for D →M′ P 44 C.3 Form factors for B(s) and D decaying into M′ V 44 C.4 The semi-leptonic decay of Ds 45 A Two-body sterile neutrino production and decay processes 36 A.1 Charged currents 36 A.2 Sterile neutrino decays into neutral pseudoscalar mesons 38 A.3 Sterile neutrino decays into neutral vector mesons 39 B Sterile neutrino production in three-body decays 40 B.1 Automizing three-body phase space integral calculations 40 B.2 Definition of three-body decay form factors 42 C Physical parameters, decay constants, and form factors 42 C.1 Form factors for B(s) →M′ P 43 C.2 Form factors for D →M′ P 44 C.3 Form factors for B(s) and D decaying into M′ V 44 C.4 The semi-leptonic decay of Ds 45 1 Introduction Neutrino oscillations have proven without doubt that neutrinos are massive particles. The Standard Model of particle physics (SM) contains no right-handed neutrino fields. This forbids the generation of a neutrino mass via the Higgs mechanism, which generates the masses of the other elementary particles. This situation can be remedied by adding a sterile neutrino field to the SM [1–5]. The sterile neutrino, also called heavy neutral lepton (HNL), is a right-handed gauge-singlet spin-1/2 field and couples to left-handed neutrinos and the Higgs field through Yukawa interactions. This generates a Dirac neutrino mass after electroweak symmetry breaking. In general, nothing forbids an additional Majorana mass term for the right-handed neutrino field, leading to Majorana mass eigenstates and lepton number violation (LNV). However, lepton number can be an (approximate) symmetry of extension beyond the SM (BSM), such that low-energy LNV signals, e.g. neutrinoless double beta decay (0νββ), is suppressed. Sterile neutrinos may not only account for neutrino masses, but have also been linked to explanations of other problems of the SM. Light sterile neutrinos can account for dark matter [6–9], while sterile neutrinos with a broad range of masses can account for the baryon asymmetry of the Universe through leptogenesis [10]. Sterile neutrinos are thus a well-motivated solution to a number of major outstanding issues in particle physics and cosmology. While the observation of neutrino masses provides a hint for the existence of sterile neutrinos, it does not specify their mass scale. They might very well be light and accessible in present-day and near future experiments. A large number of experimental and theoretical works have gone into the search for sterile neutrinos in so-called minimal scenarios, where sterile neutrinos only interact with SM fields through renormalizable Yukawa interactions – 1 – (see refs. [11, 12] for a review). Here we take a more general approach. In broad classes of BSM models, sterile neutrinos appear sterile at lower energies, but interact at higher energies through the exchange of heavy BSM fields. Examples are left-right symmetric models [13–15], grand unified theories [16], Z’ models [17], or leptoquark models [18], which contain new fields that are heavy compared to the electroweak scale. Independent of the details of these models, at low energies the sterile neutrinos can be described in terms of local effective operators in the framework of the neutrino-extended Standard Model effective field theory (νSMEFT) [19, 20]. 1 Introduction In this work, we study relatively light GeV-scale sterile neutrinos (see e.g. refs. [21–23] for LHC searches for somewhat heavier neutrinos). Such sterile neutrinos can be pro- duced either via direct production with parton collisions, or via rare decays of mesons that are copiously produced at the LHC interaction points [24, 25]. For sterile neutrino masses below the B-meson threshold the primary production mode is through rare decays of mesons with subleading contributions from partonic processes, which we estimated us- ing MadGraph5 3.0.2 [26] to be less than 10%. The latter become more important and even dominant for heavier sterile neutrinos. In this work we choose to focus on the mass range below about 5 GeV and hence on the rare meson decays, and we leave the direct production channel for future studies. If the sterile neutrinos are relatively long-lived, their decays lead to displaced vertices that can be reconstructed in LHC detectors. We consider a broad range of (proposed) LHC experiments: ATLAS [27]/CMS [28], CODEX-b [29], FASER [30, 31], MATHUSLA [32–34], AL3X [35], ANUBIS [36], MoEDAL-MAPP [37, 38], as well as the proposed CERN SPS experiment SHiP [39–41], and discuss their potential in prob- ing νSMEFT operators. We calculate νSMEFT corrections to sterile neutrino production and decay processes and perform simulations for the various detectors, to estimate their search sensitivities. Our simulations show that the experimental reach is strong, probing dimension-six operators associated to BSM scales up to a hundred TeV. In a simple 3 + 1 model, adding just one sterile neutrino field, we compare our results to existing 0νββ decay limits, showing that these experiments are complementary. JHEP03(2021)148 This paper is organized as follows. In section 2 we introduce the model framework of νSMEFT, followed by sections 3 and 4 detailing the calculation of production cross sections and decay widths of the sterile neutrinos in both the minimal model and from higher- dimensional operators. Section 5 shows the theoretical scenarios considered by numerical study in this work, and section 6 goes through the different experiments we study in detail and briefly introduces the Monte-Carlo simulation procedure. In section 7 we present the numerical results for both the minimal scenario and a number of flavor benchmarks. These results are compared with a number of other experimental probes including 0νββ decay in section 8. 2.1 The effective neutrino Lagrangian We are interested in the production and decay of sterile neutrinos at the LHC. In particular, we investigate the production of sterile neutrinos in the decay of mesons containing a single b or c quark, as these are copiously produced and are sufficiently massive to produce GeV sterile neutrinos. This is an interesting mass range that appears in scenarios of low-scale leptogenesis [42–48]. The sterile neutrinos are assumed to be singlets under the SM gauge group and, at the renormalizable level, only interact with SM fields via a Higgs Yukawa coupling to the lepton doublet. The renormalizable part of the Lagrangian is given by JHEP03(2021)148 L = LSM − 1 2 ¯νc R ¯ MRνR + ¯L ˜HYννR + h.c.  . (2.1) (2.1) LSM denotes the SM Lagrangian, L is the lepton doublet, and H is the SM complex Higgs doublet field with ˜H = iτ2H∗. We work in the unitary gauge LSM denotes the SM Lagrangian, L is the lepton doublet, and H is the SM complex Higgs doublet field with ˜H = iτ2H∗. We work in the unitary gauge H = v √ 2 0 1 + h v ! , (2.2) (2.2) where v = 246 GeV is the Higgs vacuum expectation value of the Higgs real scalar h. νR is an n × 1 column vector of n right-handed gauge-singlet neutrinos. Yν is a 3 × n matrix of Yukawa couplings. ¯ MR is a complex symmetric n × n mass matrix. In general we can work in a basis where the charged leptons and all quarks are in their mass eigenstates, except the di L, i = 1, 2, 3, for which we have di L = V ijdj, mass L with V the CKM matrix. Ψc is the charge conjugate field of Ψ with Ψc = C ¯ΨT and C is the charge conjugation matrix, C = −iγ2γ0, which satisfies the relation C = −C−1 = −CT = −C†. We define Ψc L,R = (ΨL,R)c = CΨL,R T = PR,LΨc, in terms of the projectors PR,L = (1 ± γ5)/2. The Lagrangian in eq. (2.1) can account for the observed active neutrino masses and mixing angles if n ≥2 (in case of n = 2 the lightest neutrino is massless [49]). As lepton number is explicitly violated by the Majorana masses, ¯ MR, eq. 2 Standard model effective field theory extended by sterile neutrinos 2 Standard model effective field theory extended by sterile neutrinos 1 Introduction In a set of appendices, we present the details of the production and decay rate computations, as well as the physical parameters, decay constants, and form factor input we employ. We conclude and provide an outlook in section 9. – 2 – 2.1 The effective neutrino Lagrangian (2.1) in general leads to Majorana neutrino mass eigenstates and thus to 0νββ decay and other LNV processes, unless additional structure is imposed on the matrices ¯ MR and Yν. In various popular extensions of the SM, right-handed neutrinos appear naturally, but are not completely sterile. For instance, in left-right symmetric models right-handed neutri- nos are charged under a right-handed SU(2)R gauge group and interact with right-handed gauge bosons and new scalar fields. If such bosons exist, they must be heavy, with masses well above the electroweak scale, to avoid experimental constraints. The right-handed neu- trinos on the other hand, can remain light. From this point of view, the scale separation suggests the use of an EFT framework where the degrees of freedom are the usual SM fields, as well as a set of n neutrinos, which are singlets under the SM gauge groups. The interac- tions in eq. (2.1) form the dimension-four and lower part of a more general Lagrangian con- taining higher-dimensional operators that is often referred to as the νSMEFT [19, 50–52]. We begin by introducing the higher-dimensional operators at a scale Λ ≫v, where Λ denotes the scale where we match the microscopic UV theory to the νSMEFT. – 3 – Class 1 ψ2H3 Class 4 ψ4 O(6) LνH (¯LνR) ˜H(H†H) O(6) duνe ( ¯dγµu)(¯νRγµe) Class 2 ψ2H2D O(6) QuνL ( ¯Qu)(¯νRL) O(6) Hνe (¯νRγµe)( ˜H†iDµH) O(6) LνQd (¯LνR)ϵ( ¯Qd)) Class 3 ψ2H3D O(6) LdQν (¯Ld)ϵ( ¯QνR) O(6) νW (¯LσµννR)τ I ˜HW Iµν Table 1. νSMEFT dim-6 operators [20] involving one sterile neutrino field. Table 1. νSMEFT dim-6 operators [20] involving one sterile neutrino field. JHEP03(2021)148 The first operators have dimension 5 The first operators have dimension 5 L(5) νL = ϵklϵmn(LT k C(5) CLm)HlHn , L(5) νR = −¯νc R M(5) R νRH†H . (2.3) L(5) νL = ϵklϵmn(LT k C(5) CLm)HlHn , L(5) νR = −¯νc R M(5) R νRH†H . (2.3) (2.3) At lower energies, after electroweak symmetry breaking these operators contribute to, respectively, Majorana mass terms for active and sterile neutrinos. The first operator, the famous Weinberg operator [53], can for instance be induced by integrating out sterile neutrinos with masses of O(Λ) usually referred to as a type-I seesaw mechanism. The second operator, for our purposes, can simply be absorbed in ¯ MR in eq. (2.1). 1Operators with a left-handed neutrino also contribute to the same observables we discuss here, but t contributions are suppressed by small heavy-light neutrino mixing angles. 2.1 The effective neutrino Lagrangian For n ≥2 there appears a dim-5 transition dipole operator, but we will not consider it here. We are mainly interested in the operators that appear at dimension-6 [20, 54]. We focus on operators that involve a single right-handed neutrino1 and limit the set of effective operators to those that lead to hadronic processes at tree level. A more general set of interactions is left for future work. The operators are presented in table 1. For our purposes, the operator O(6) LνH can be absorbed in a shift in Yν in eq. (2.1). The related Higgs phenomenology was discussed in ref. [55]. This leaves us with the remaining six operators that, in general, have arbitrary flavor indices although certain couplings can be suppressed if minimal flavor violation is assumed [56, 57]. We evolve the operators from Λ to the electroweak scale using one-loop QCD anomalous dimensions. The operators O(6) Hνe, O(6) νW , and O(6) duνe do not evolve under QCD at one loop. The remaining three operators evolve simply as [51] dC(6) QuνL d ln µ = αs 4π  γS C(6) QuνL , dC(6) S d ln µ = αs 4π  γS C(6) S , dC(6) T d ln µ = αs 4π  γT C(6) T , (2.4) where C(6) S and C(6) T are defined as the linear combinations where C(6) S and C(6) T are defined as the linear combinations C(6) S = −1 2C(6) LdQν + C(6) LνQd , C(6) T = −1 8C(6) LdQν , (2.5) (2.5) and γS = −6CF , γT = 2CF , (2.6) γS = −6CF , γT = 2CF , (2.6) (2.6) where CF = (N2 c −1)/(2Nc) and Nc = 3, the number of colors. where CF = (N2 c −1)/(2Nc) and Nc = 3, the number of colors. where CF = (N2 c −1)/(2Nc) and Nc = 3, the number of colors. 1Operators with a left-handed neutrino also contribute to the same observables we discuss here, but the contributions are suppressed by small heavy-light neutrino mixing angles. – 4 – At the electroweak scale, we integrate out the heavy SM fields (W-, Z-, and Higgs-boson and top quark) and match to a SU(3)c × U(1)em-invariant EFT. The tree-level matching relations for νSMEFT operators up to dimension-7 were given in ref. [51] and here we use a subset of these results. 2.1 The effective neutrino Lagrangian (2.8), we also include the effects of the SM weak neutral currents that contribute to decay processes of sterile neutrinos L(6) neutral = −4GF √ 2 ¯νi Lγµνi L ( ¯eLγµ  −1 2 + sin2 θw  eL + ¯eRγµ(sin2 θw)eR + ¯uLγµ 1 2 −2 3 sin2 θw  uL + ¯uR γµ  −2 3 sin2 θw  uR + ¯dLγµ  −1 2 + 1 3 sin2 θw  dL + ¯dR γµ 1 3 sin2 θw  dR + 1 4(2 −δij)¯νj Lγµνj L ) , (2.12) (2.12) where i, j are the flavor indices of active neutrinos and θw is the Weinberg angle. where i, j are the flavor indices of active neutrinos and θw is the Weinberg angle. 2.1 The effective neutrino Lagrangian We obtain L = LSM − 1 2 ¯νc L MLνL + 1 2 ¯νc R MRνR + ¯νLMDνR + h.c.  +L(6) ∆L=0 + L(6) ∆L=2 + L(7) ∆L=0 , (2.7) (2.7) where LSM contains dimension-four and lower operators involving light SM fields. L(6) ∆L=0 includes dim-6 operators that conserve lepton number (∆L = 0) and is given by JHEP03(2021)148 L(6) ∆L=0 = 2GF √ 2 n ¯uLγµdL h ¯eLγµc(6) VL νL + ¯eRγµ¯c(6) VL νR i + ¯uRγµdR ¯eR γµ¯c(6) VR νR +¯uLdR ¯eL ¯c(6) SRνR + ¯uRdL ¯eL ¯c(6) SLνR + ¯uLσµνdR ¯eLσµν¯c(6) T νR o + h.c. . (2.8) For the operators in table 1 the Lagrangians L(6) ∆L=2 and L(7) ∆L=0 only contain a single term each L(6) ∆L=2 = 2GF √ 2 n ¯uLγµdL ¯eLγµ ¯C(6) VL νc R o + h.c. , L(7) ∆L=0 = 2GF √ 2v n ¯uLγµdL ¯eL ¯c(7) VL i←→ D µνR o + h.c. (2.9) (2.9) where ←→ D µ = Dµ−←− Dµ. In these expressions we have suppressed flavor indices on the Wilson coefficients. Each Wilson coefficient carries indices ijkl where i, j = {1, 2, 3} indicate the generation of the involved up-type and down-type quarks, respectively, k = {1, 2, 3} the generation of the charged lepton (we will often use the labels e, µ, τ instead for clarity) and l = {1, 2, 3} for c(6) VL the generation of the active neutrino, while l = {1, . . . , n} for the remaining Wilson coefficients involving sterile neutrinos. The explicit matching relations are given by ref. [51] ML = −v2C(5) , MR = ¯ MR + v2 ¯ M(5) R , MD = v √ 2  Yν −v2 2 C(6) LνH  , (2.10) (2.10) for the mass terms in eq. (2.7), and for the mass terms in eq. 2.1 The effective neutrino Lagrangian (2.7), and c(6) VL = −2V 1 −4 √ 2v g C(6) νW V M † D , ¯c(6) VL = " −v2C(6) HνeV −4 √ 2v g  C(6) νW † V Me #† , ¯c(6) VR = v2  C(6) duνe † , ¯c(6) SR = −v2C(6) LνQd + v2 2 C(6) LdQν , – 5 – ¯c(6) SL = v2  C(6) QuνL † V , ¯c(6) T = v2 8 C(6) LdQν , ¯C(6) VL = −4 √ 2v g C(6) νW V M † R, ¯c(7) VL = 4 √ 2v2 g C(6) νW V , (2.11) (2.11) for the remaining operators. Here V denotes the CKM matrix, 1 the 3×3 identity matrix in lepton flavor space, and Me = diag(me, mµ, mτ) is the diagonal matrix of charged lepton masses. JHEP03(2021)148 The first term in the expression for c(6) VL denotes the contribution from the SM weak interaction. All other entries arise from the dimension-6 operators, in some cases with additional insertions of leptonic mass matrices. The operators with Wilson coefficients ¯C(6) VL and ¯c(7) VL are only induced by the dimension-6 operator O(6) νW . This operator involves a derivative acting on a charged W ± field which, after integrating out the W ± bosons, leads to operators involving an explicit derivative (¯c(7) VL) or an insertion of a lepton mass by using the equations of motion. C(6) νW is strictly constrained because it generates neutrino dipole moments at one-loop [55, 58]. Additionally, if these constraints are avoided N would decay relatively fast into two body final states via N →νγ [59, 60]. To ensure that N is long-lived, we suppress O(6) νW in the following. This effectively implies we do not consider the effects of ¯C(6) VL and ¯c(7) VL. Besides the charged currents listed in eq. 2.2 Rotating to the neutrino mass basis After electroweak symmetry breaking the neutrino masses can be written as Lm = −1 2 ¯NcMνN + h.c. , Mν = ML M∗ D M† D M† R ! , (2.13) (2.13) where Mν is a ¯n × ¯n symmetric matrix with ¯n = 3 + n and N = (νL, νc R)T . We use a ¯n × ¯n unitary matrix, U, to diagonalize the mass matrix where Mν is a ¯n × ¯n symmetric matrix with ¯n = 3 + n and N = (νL, νc R)T . We use a ¯n × ¯n unitary matrix, U, to diagonalize the mass matrix U T MνU = mν ≡diag(m1, . . . , m3+n) , (2.14) (2.14) – 6 – – 6 – and define N = UNm. In absence of sterile neutrinos, U is the usual PMNS matrix. We write the Majorana mass eigenstates as ν ≡Nm+Nc m = νc that appear in the Lagrangian as and define N = UNm. In absence of sterile neutrinos, U is the usual PMNS matrix. We write the Majorana mass eigenstates as ν ≡Nm+Nc m = νc that appear in the Lagrangian as Lν = 1 2 ¯νi/∂ν −1 2 ¯νmνν . (2.15) (2.15) We introduce 3 × ¯n and n × ¯n projector matrices We introduce 3 × ¯n and n × ¯n projector matrices P =  I3×3 03×n  , Ps =  0n×3 In×n  , (2.16) (2.16) to express the relation between the neutrinos in the flavor and mass basis as to express the relation between the neutrinos in the flavor and mass basis as JHEP03(2021)148 JHEP03(2021)148 νL = PL(PU)ν , νc L = PR(PU ∗)ν , νR = PR(PsU ∗)ν , νc R = PL(PsU)ν . (2.17) (2.17) In the mass basis, the operators in eqs. (2.8)–(2.9) become In the mass basis, the operators in eqs. (2.8)–(2.9) become L(6,7) mass = 2GF √ 2  ¯uLγµdL h ¯eLγµC(6) VLL ν + ¯eRγµC(6) VLR ν i + ¯uRγµdR ¯eR γµC(6) VRR ν ¯uLdR ¯eL C(6) SRRν + ¯uRdL ¯eL C(6) SLRν + ¯uLσµνdR ¯eLσµνC(6) TRRν +1 v ¯uLγµdL ¯eL C(7) VLR i←→ D µν  + h.c. 3.1 Sterile neutrino production in minimal models We begin by discussing sterile neutrino production in minimal models where sterile neu- trinos interact with SM fields only via mixing. For simplicity, we consider a single sterile neutrino with mass mN and set n = 1 (n = 4). The production then arises solely from the first term in eq. (2.18) with (C(6) VLL)ijk4 = −2Vij Uk4, where V is the CKM matrix and U the lepton mixing matrix. A broad range of processes are relevant. Naively one might think that leptonic meson decays M± ij →N +l± k would dominate because of phase space suppres- sion associated to semi-leptonic decays, but CKM factors and powers of meson/neutrino masses in the amplitude expressions change this picture. To calculate the production rate, we require the number of mesons produced at the various experiments and the branching ratio to final states including a sterile neutrino. The former is discussed below, while here we calculate the latter. For minimal models, these branching ratios have been calculated in the literature, see refs. [63, 64] for recent discussions, and here we confirm (most of) these results. We consider leptonic and semi-leptonic decays of D±, D0, Ds, B±, B0, and Bs mesons. For semi-leptonic decays, we consider final-state pseudoscalar and vector mesons. The decay rate formulae and the associated decay constants and form factors are given in the appendix. In the left and right panels of figure 1 we depict a selection of branching ratios for decay processes of D−, Ds, and B−, Bs mesons, respectively. Branching ratios for analogous decays of neutral D0 or B0 are similar and not shown to not clutter the plots too much. For these examples we considered a final-state electron and set Ue4 = 1. All branching ratios are in excellent agreement with ref. [63]. From the plots it is clear that, depending on the mass mN, both leptonic (solid lines) and semi-leptonic processes (dashed, dotted, and dot-dashed lines) must be included and the latter involve both final- state pseudoscalar and vector mesons. 3 Production of sterile neutrinos In this section we discuss the production of sterile neutrinos at collider and fixed-target ex- periments. For concreteness we consider the case where the sterile neutrinos are Majorana particles. We consider the production through the decay of mesons, produced at the in- teraction points, containing a single charm or bottom quark. We neglect the subdominant contribution from Bc, J/Ψ, and Υ mesons although they would allow to probe a larger neutrino mass range. Production via the decay of pseudoscalar mesons dominates over the contribution from vector mesons of the same quark composition, due to the much shorter lifetime of the latter. Sterile neutrino production via direct decays of W-, Z-, and Higgs bosons is subdominant for O(GeV) neutrinos, mainly because of their smaller production cross sections [33, 61, 62]. JHEP03(2021)148 2.2 Rotating to the neutrino mass basis , (2.1 L(6,7) mass = 2GF √ 2  ¯uLγµdL h ¯eLγµC(6) VLL ν + ¯eRγµC(6) VLR ν i + ¯uRγµdR ¯eR γµC(6) VR ¯uLdR ¯eL C(6) SRRν + ¯uRdL ¯eL C(6) SLRν + ¯uLσµνdR ¯eLσµνC(6) TRRν  (2.18) where where C(6) VLL = c(6) VLPU + ¯C(6) VLPsU , C(6) VLR = ¯c(6) VLPsU ∗, C(6) VRR = ¯c(6) VRPsU ∗, C(6) SRR = ¯c(6) SRPsU ∗, C(6) SLR = ¯c(6) SLPsU ∗, C(6) TRR = ¯c(6) T PsU ∗, C(7) VLR = ¯c(7) VLPsU ∗. (2.19) (2.19) Each Wilson coefficient again carries four flavor indices ijkl where i, j, k = {1, 2, 3} indicate the generation of the involved up quark, down quark, and charged lepton, respectively. l now denotes the particular neutrino mass eigenstate and runs from {1, . . . , ¯n}. Each Wilson coefficient again carries four flavor indices ijkl where i, j, k = {1, 2, 3} indicate the generation of the involved up quark, down quark, and charged lepton, respectively. l now denotes the particular neutrino mass eigenstate and runs from {1, . . . , ¯n}. Finally, we evolve the operators down to the bottom or charm mass. The vector currents do not evolve while the scalar and tensor dimension-6 and -7 couplings evolve in the same way as the scalar and tensor currents in eq. (2.4), with C(6) S = C(6) SRR, SLR , C(6) T = C(6) TRR . (2.20) (2.20) In what follows we only consider the dimension-six terms in eq. (2.18) and neglect the dimension-seven operator proportional to C(7) VLR whose low-energy effects are suppressed by mb,c/v. Furthermore, as discussed below eq. (2.11), C(7) VLR is only induced by the νSMEFT operator C(6) νW which is strongly constrained by other probes. – 7 – 3.2 Sterile neutrino production from higher-dimensional operators For higher-dimensional operators the quark flavor structure of the Wilson coefficients is unknown in contrast to the minimal case where the CKM matrix provides the relation between processes involving different quarks. As such, each flavor structure is independent – 8 – 0.0 0.5 1.0 1.5 2.0 10-4 0.001 0.010 0.100 1 mN[GeV] BR(D->X+N) D- →e- + N D- →e- + π0 + N D- →e- + K0 + N D- →e- + K0* + N Ds →e- + N Ds →e- + η + N Ds →e- + η′ + N Ds →e- + N + ϕ Ds →e- + K0 + N 0 1 2 3 4 5 10-6 10-5 10-4 0.001 0.010 0.100 mN[GeV] BR(B->X+N) B- →e- + N B- →e- + π0 + N B- →e- + ρ0 + N B- →e- + D0 + N B- →e- + D0* + N Bs →e- + K+ + N Bs →e- + K+* + N Bs →e- + Ds + N Bs →Ds * + e- + N Figure 1. Branching ratios of sterile neutrino production channels through D (left figure) or B (right figure) mesons in the minimal scenario for final-state electrons and Ue4 = 1. 0 1 2 3 4 5 10-6 10-5 10-4 0.001 0.010 0.100 mN[GeV] BR(B->X+N) B- →e- + N B- →e- + π0 + N B- →e- + ρ0 + N B- →e- + D0 + N B- →e- + D0* + N Bs →e- + K+ + N Bs →e- + K+* + N Bs →e- + Ds + N Bs →Ds * + e- + N 0.0 0.5 1.0 1.5 2.0 10-4 0.001 0.010 0.100 1 mN[GeV] BR(D->X+N) Figure 1. Branching ratios of sterile neutrino production channels through D (left figure) or B (right figure) mesons in the minimal scenario for final-state electrons and Ue4 = 1. JHEP03(2021)148 unless model assumptions are used. This leads to a large number of possible cases corre- sponding to several flavor structures for each effective operator in eq. (2.18). All branching ratios can be calculated from the expressions given in the appendices. Here we discuss a few cases only. We consider the operators with Wilson coefficients C(6) SRR, C(6) TRR, and C(6) VLR. 3.2 Sterile neutrino production from higher-dimensional operators We consider the flavor structures {ijkl} = 13e4 and {ijkl} = 21e4 that allow for leptonic decays B →N + e and D →N + e, respectively, if the Lorentz structure permits this. These choices also allow for semi-leptonic decays of the form B → N + e + X and D →N + e + X where X is a pseudoscalar or vector meson consisting of just up, down, and strange quarks (strange quarks only if the decaying meson contains a strange quark as is the case for Bs and Ds mesons). For the plots in this section, we assume the weak interaction is turned offand consider only one non-zero EFT operator at a time. The results are depicted in figure 2. The three chosen operators correspond to quark bilinears with different Lorentz struc- tures (scalar, tensor, and vector, respectively). In the scalar case, leptonic decays are allowed and these dominate over semi-leptonic decay modes for all considered values of the sterile neutrino mass. For the tensor operator, however, the leptonic decay mode is forbidden and a final-state meson must be produced. In these cases, the dominant decay modes are those with a final-state vector meson. Finally, the C(6) VLR vector operator has a similar Lorentz structure as the SM charged weak current, but with different flavor struc- ture. As was the case in figure 1, depending on the sterile neutrino mass, either leptonic (solid lines) or semi-leptonic processes (dashed, dotted, and dot-dashed lines) can dominate the production of sterile neutrinos, and must all be included. 4.1 Sterile neutrino decays in minimal models We begin by considering the minimal scenario, where we assume that the only non-zero term in eq. (2.18) is (C(6) VLL)ijk4 = −2Vij Uk4. For concreteness we consider decays of Majorana sterile neutrinos into final-state electrons and set Ue4 ̸= 0 and Uµ4 = Uτ4 = 0. In addition, we consider the SM weak neutral current (see eq. (2.12)), which leads to N →ν + f + ¯f decays where f denotes any SM fermion that is kinematically allowed (in case of quarks, we consider a final-state neutral meson). These decay rates have all been calculated in the – 9 – 0.0 0.5 1.0 1.5 10-7 10-6 10-5 10-4 0.001 0.010 mN[GeV] BR(D->X+N) CSRR=0.1 D- →e- + N D- →e- + π0 + N D- →e- + ρ0 + N Ds →e- + K0 + N Ds →e- + K0* + N 0 1 2 3 4 5 10-6 10-5 10-4 0.001 0.010 0.100 1 mN[GeV] BR(B->X+N) CSRR=0.1 B- →e- + N B- →e- + π0 + N B- →e- + ρ0 + N Bs →e- + K+ + N Bs →e- + K+* + N 0.0 0.5 1.0 1.5 10-7 10-6 10-5 10-4 0.001 mN[GeV] BR(D->X+N) CTRR=0.025 D- →e- + π0 + N D- →e- + ρ0 + N Ds →e- + K0 + N Ds →e- + K0* + N 0 1 2 3 4 5 10-6 10-5 10-4 0.001 0.010 0.100 1 mN[GeV] BR(B->X+N) CTRR=0.025 B- →e- + π0 + N B- →e- + ρ0 + N Bs →e- + K+ + N Bs →e- + K+* + N 0.0 0.5 1.0 1.5 10-7 10-6 10-5 10-4 0.001 0.010 mN[GeV] BR(D->X+N) CVLR=0.1 D- →e- + N D- →e- + π0 + N D- →e- + ρ0 + N Ds →e- + K0 + N Ds →e- + K0* + N 0 1 2 3 4 5 10-6 10-5 10-4 0.001 0.010 0.100 1 mN[GeV] BR(B->X+N) CVLR=0.1 B- →e- + N B- →e- + π0 + N B- →e- + ρ0 + N Bs →e- + K+ + N Bs →e- + K+* + N Figure 2. Branching ratios of D and B mesons in the left and right panels, respectively. Left: from top to bottom the figures correspond to (C(6) SRR)21e4 = 0.1, (C(6) TRR)21e4 = 0.025 and (C(6) VLR)21e4 = 0.1, respectively. 4.1 Sterile neutrino decays in minimal models Right: from top to bottom the figures correspond to (C(6) SRR)13e4 = 0.1, (C(6) TRR)13e4 = 0.025 and (C(6) VLR)13e4 = 0.1, respectively. 0.0 0.5 1.0 1.5 10-7 10-6 10-5 10-4 0.001 0.010 mN[GeV] BR(D->X+N) CSRR=0.1 0.0 0.5 1.0 1.5 10-7 10-6 10-5 10-4 0.001 mN[GeV] BR(D->X+N) CTRR=0.025 CVLR=0 1 JHEP03(2021)148 0 1 2 3 4 5 10-6 10-5 10-4 0.001 0.010 0.100 1 mN[GeV] BR(B->X+N) CVLR=0.1 B- →e- + N B- →e- + π0 + N B- →e- + ρ0 + N Bs →e- + K+ + N Bs →e- + K+* + N Figure 2. Branching ratios of D and B mesons in the left and right panels, respectively. Left: from top to bottom the figures correspond to (C(6) SRR)21e4 = 0.1, (C(6) TRR)21e4 = 0.025 and (C(6) VLR)21e4 = 0.1, respectively. Right: from top to bottom the figures correspond to (C(6) SRR)13e4 = 0.1, (C(6) TRR)13e4 = 0.025 and (C(6) VLR)13e4 = 0.1, respectively. literature, see e.g. refs. [63–68]. Most results agree with each other and with our findings given in the appendix, with the exception for decay processes into final-state neutral mesons where some differences appear. For these cases, our results agree with ref. [64]. We consider N →leptons through both charged and neutral weak currents. The latter leads to the invisible three-neutrino decay mode. We include decays into a single pseudoscalar (π, K, η, η′, D, Ds, ηc) and vector meson (ρ, ω, K∗, φ, D∗, D∗ s, J/Ψ). This effectively also takes into account decay modes into two pions through the intermediate decays of ρ mesons [63], assuming mN > mρ. For heavier sterile neutrinos other multi- meson final states become relevant and summing exclusive channels becomes impractical. Instead we follow ref. [63] and estimate the total hadronic decay width by calculating the decay width to spectator quarks times appropriate loop corrections. The loop corrections are taken from a comparison to hadronic τ decays 1 + ∆QCD(mτ) ≡ Γ(τ →νe + hadrons) Γtree(τ →ντ + ¯u + D)) , (4.1) (4.1) – 10 – 1 2 3 4 5 0.01 0.05 0.10 0.50 1 mN[GeV] Γsingle meson /Γquarks N →all mesons N →π N →η,η',ηc N →ρ N →ω+ϕ N →Ds* + Ds 0.01 0.05 0.10 0.50 1 5 10-6 0.001 1 1000 106 mN[GeV] Ue4 2 cτN [m] Figure 3. 4.1 Sterile neutrino decays in minimal models Left: Comparison of branching ratios to individual mesons divided by the inclusive hadronic branching ratio calculated via eq. (4.3). Right: Decay length of the sterile neutrino in minimal scenarios. 1 2 3 4 5 0.01 0.05 0.10 0.50 1 mN[GeV] Γsingle meson /Γquarks N →all mesons N →π N →η,η',ηc N →ρ N →ω+ϕ N →Ds* + Ds 0.01 0.05 0.10 0.50 1 5 10-6 0.001 1 1000 106 mN[GeV] Ue4 2 cτN [m] Figure 3. Left: Comparison of branching ratios to individual mesons divided by the inclusive hadronic branching ratio calculated via eq. (4.3). Right: Decay length of the sterile neutrino in minimal scenarios. JHEP03(2021)148 where D denotes a d or s quark and where D denotes a d or s quark and where D denotes a d or s quark and ∆QCD = αs π + 5.2α2 s π2 + . . . , (4.2) (4.2) where dots denote higher-order corrections. This gives a good description of the inclusive hadronic τ decay rate and we assume this to hold for sterile neutrino decays in the minimal scenario as well. That is, we use 1 + ∆QCD(mN) ≡Γ(N →e−/νe + hadrons) Γtree(N →e−/νe + ¯qq) , (4.3) (4.3) to calculate the inclusive hadronic sterile neutrino decay rate through both charged and neutral weak currents. We find that single meson channels dominate for mN ≲1 GeV, while the decay to quarks become relevant for larger masses, indicating that multi-meson final states become significant. We demonstrate this in the left plot of figure 3, which shows branching ratios to individual mesons, compared to the sum of all single-meson final states, and compared to quarks, for mN ≳1 GeV. At mN = 5 GeV, the single meson final states make up roughly 20% of the hadronic decay rate. Our results are in good agreement with ref. [63], apart from decays to neutral vector mesons, which only play a small role. We write the total decay rate as We write the total decay rate as ΓN = θ(1 GeV −mN)ΓN→single meson + θ(mN −1 GeV) [1 + ∆QCD(mN)] ΓN→¯qq +ΓN→leptons . (4.4) (4.4) In the right panel of figure 3, we show a plot of the scaled proper decay length, U 2 e4cτN, as a function of mN in the minimal scenario, where c is the speed of light and τN is the proper lifetime of N. 4.1 Sterile neutrino decays in minimal models The branching ratios to individual mesons, leptons, and three neutrinos (invisible) for mN < 1 GeV are shown in the left panel of figure 4 while the branching ratios to quarks, leptons, and invisible for mN > 1 GeV are shown in the right panel of the same figure. – 11 – 0.05 0.10 0.50 1 0.001 0.005 0.010 0.050 0.100 0.500 1 mN[GeV] BR N →invisible N →leptons N →π N →η,η' N →K* + K N →ρ 1 2 3 4 5 0.2 0.4 0.6 0.8 1.0 mN[GeV] BR N →quarks N → leptons N →invisible Figure 4. Branching ratios in the minimal scenario for Ue4 = 1 and Uµ4 = Uτ4 = 0. Left: mN < 1 GeV with decays to individual mesons. Right: mN > 1 GeV and the decays to quarks correspond to the total hadronic branching ratio. 0.05 0.10 0.50 1 0.001 0.005 0.010 0.050 0.100 0.500 1 mN[GeV] BR N →invisible N →leptons N →π N →η,η' N →K* + K N →ρ 1 2 3 4 5 0.2 0.4 0.6 0.8 1.0 mN[GeV] BR N →quarks N → leptons N →invisible Figure 4. Branching ratios in the minimal scenario for Ue4 = 1 and Uµ4 = Uτ4 = 0. Left: mN < 1 GeV with decays to individual mesons. Right: mN > 1 GeV and the decays to quarks correspond to the total hadronic branching ratio. JHEP03(2021)148 4.2 Sterile neutrino decays from higher-dimensional operators The EFT operators in eq. (2.18) involve two quarks and a charged lepton and induce new channels for sterile neutrinos to decay into hadrons. Depending on the flavor structure of the operators, typically only one or two single-meson decay modes are relevant. For instance for an operator (C(6) VLR)ije4 with ij = 11 we consider decays into a single charged pion or ρ meson, while for (C(6) SRR)11e4 only pions are relevant. As is the case for the minimal scenario, one can imagine multi-meson states to become relevant for larger sterile neutrino masses (for this flavor choice, such states would be three- or more pions). We do not include such states here, although we find that decays to quarks become dominant around mN ≳2 GeV for scalar operators, as we do not have the benchmark of hadronic τ decays to verify our results for non-SM currents. We only consider decays into individual mesons. This leads to a potential underestimate of the sterile neutrino decay width and consequently renders our sensitivity limits for future experiments conservative in the large decay length regime. As all our results below are given on log scales, we do not expect significant deviations from our findings. In figure 5 we plot the proper decay length of N, cτN, against its mass for various choices of Wilson coefficients and flavor assignments. We consider one effective coupling at the time, turn offminimal mixing, and the Wilson coefficients are set to unity. 5 Theoretical scenarios We stress that the minimal 3 + 1 model leads to two massless active neutrinos and is thus ruled out by neutrino oscillation experiments, but with its simplicity it provides a useful benchmark. parameter. We stress that the minimal 3 + 1 model leads to two massless active neutrinos and is thus ruled out by neutrino oscillation experiments, but with its simplicity it provides a useful benchmark. 2. In this scenario we extend the minimal 3 + 1 model by interactions generated by the exchange of leptoquarks. All possible representations of LQs are summarized in ref. [18]. We focus on the representation ˜R (3, 2, 1/6), which can couple to (sterile) neutrinos through the Lagrangian 2. In this scenario we extend the minimal 3 + 1 model by interactions generated by the exchange of leptoquarks. All possible representations of LQs are summarized in ref. [18]. We focus on the representation ˜R (3, 2, 1/6), which can couple to (sterile) neutrinos through the Lagrangian LLQ = −yRL jk ¯dRj ˜RaϵabLb Lk + yLR il ¯Qa Li ˜RaνRl + h.c. , (5.1) (5.1) where a, b are SU(2) indices and i, j, k, l are flavor indices, respectively. Note that l = 1 in the 3 + 1 model. LHC constraints force the leptoquark mass, mLQ, to be above a few TeV and for low-energy purposes we can integrate it out. At tree level this leads to the effective operator where a, b are SU(2) indices and i, j, k, l are flavor indices, respectively. Note that l = 1 in the 3 + 1 model. LHC constraints force the leptoquark mass, mLQ, to be above a few TeV and for low-energy purposes we can integrate it out. At tree level this leads to the effective operator L(6) νR =  C(6) LdQν  ijkl ¯La kdj  ϵab  ¯Qb iνRl  + h.c. , (5.2) (5.2) where where  C(6) LdQν  ijkl = 1 m2 LQ yLR il yRL∗ jk . (5.3) (5.3) We read from eq. (2.11) ¯c(6) SR = 4¯c(6) T = v2 2 C(6) LdQν . (5.4) (5.4) Finally, going to the neutrino mass basis and focusing on the couplings to electrons and sterile neutrinos, we obtain the matching contributions to the effective operators in eq. 5 Theoretical scenarios In this work we focus on the production of sterile neutrinos through the decays of B and D mesons. We consider three classes of scenarios that are representative of the effective Lagrangian in eq. (2.18). We always consider the case of a single sterile neutrino which is mixed with the active electron neutrino. The three classes of scenarios are listed below: 1. Here we consider the minimal scenario without higher-dimensional operators and 1 sterile neutrino (a 3 + 1 model). Because of minimal sterile-active mixing, the sterile neutrino only interacts through charged and neutral SM weak interactions. In the 3 + 1 minimal seesaw model, the mixing angle is related to the ratio of active and sterile neutrino masses |Ue4|2 ∼mν/mN, but we treat the mixing angle as a free 3 + 1 minimal seesaw model, the mixing angle is related to the ratio of active and sterile neutrino masses |Ue4|2 ∼mν/mN, but we treat the mixing angle as a free – 12 – 0.1 0.2 0.5 1 2 5 10-6 0.001 1 mN[GeV] cτN [m] (CSRR (6) )11 e4 (CTRR (6) )11 e4 (CVLR (6) )11 e4 (CSRR (6) )12 e4 (CTRR (6) )12 e4 (CVLR (6) )12 e4 (CSRR (6) )21 e4 (CTRR (6) )21 e4 (CVLR (6) )21 e4 Figure 5. Proper decay length of sterile neutrinos for various choices of EFT operators and flavor assignments. The Wilson coefficients are set to unity and the minimal active-sterile mixing is turned off. 0.1 0.2 0.5 1 2 5 10-6 0.001 1 mN[GeV] cτN [m] (CSRR (6) )11 e4 (CTRR (6) )11 e4 (CVLR (6) )11 e4 (CSRR (6) )12 e4 (CTRR (6) )12 e4 (CVLR (6) )12 e4 (CSRR (6) )21 e4 (CTRR (6) )21 e4 (CVLR (6) )21 e4 Figure 5. Proper decay length of sterile neutrinos for various choices of EFT operators and flavor assignments. The Wilson coefficients are set to unity and the minimal active-sterile mixing is turned off JHEP03(2021)148 Figure 5. Proper decay length of sterile neutrinos for various choices of EFT operators and flavor assignments. The Wilson coefficients are set to unity and the minimal active-sterile mixing is turned off. parameter. We stress that the minimal 3 + 1 model leads to two massless active neutrinos and is thus ruled out by neutrino oscillation experiments, but with its simplicity it provides a useful benchmark. parameter. 5 Theoretical scenarios (2.18) Finally, going to the neutrino mass basis and focusing on the couplings to electrons and sterile neutrinos, we obtain the matching contributions to the effective operators in eq. (2.18)  C(6) VLL  ije4 = −2VijUe4 ,  C(6) SRR  ije4 = 4  C(6) TRR  ije4 =  ¯c(6) SR  ije1 U ∗ 44 , (5.5) (5.5) – 13 – – 13 – where i and j denote the up- and down-quark generation, respectively, and Vij el- ements of the CKM matrix. In this scenario, we have contributions from minimal mixing proportional to the mixing angle Ue4 and from leptoquark interactions pro- portional to U ∗ 44. We will use the canonical see-saw relations Ue4 ≃ r mν mN , U44 = 1 , (5.6) (5.6) and set mν = 0.05 eV as representative for the active neutrino masses. For a specific quark flavor choice of i and j, this reduces the effective number of free parameters to two: the sterile neutrino mass mN and the combination of the LQ couplings and mass yLR i1 yRL∗ je /m2 LQ. and set mν = 0.05 eV as representative for the active neutrino masses. For a specific quark flavor choice of i and j, this reduces the effective number of free parameters to two: the sterile neutrino mass mN and the combination of the LQ couplings and mass yLR i1 yRL∗ je /m2 LQ. JHEP03(2021)148 3. The final scenario we consider is inspired by models, such as left-right symmetric models, with right-handed charged gauge bosons, which can mix with W ±. Instead of implementing the full left-right symmetric model, we take a simplified scenario and consider the effects of a nonzero C(6) VLR in eq. (2.18) in combination with the SM left-handed weak interactions. That is, we consider 3. The final scenario we consider is inspired by models, such as left-right symmetric models, with right-handed charged gauge bosons, which can mix with W ±. Instead of implementing the full left-right symmetric model, we take a simplified scenario and consider the effects of a nonzero C(6) VLR in eq. (2.18) in combination with the SM left-handed weak interactions. That is, we consider  C(6) VLL  ije4 = −2VijUe4 ,  C(6) VLR  ije4 > 0 . (5.7) (5.7) In left-right symmetric scenarios nonzero C(6) VRR and C(6) VRL are generally induced as well. 5 Theoretical scenarios The resulting phenomenology is very similar to C(6) VLL and C(6) VLR and for simplic- ity we do not consider these effective operators here. They can be easily added to the analysis if so required. For the active-sterile neutrino mixing parameter, we follow the leptoquark scenario and set Ue4 = p mν/mN. In minimal left-right symmetric models with exact P or C symmetry, the dependence of the effective operators on the quark flavor indices ij can be calculated. We do not consider this here and consider one particular choice of ij at a time. It is straightforward to generalize this choice. 6 Collider and fixed-target analysis We proceed to explore the search possibilities for the above scenarios at the LHC, consider- ing both existing and proposed experiments, as well as the proposed fixed-target experiment SHiP at the CERN SPS [39–41]. Currently at the LHC we have the operational experiments ALICE [69, 70], ATLAS [27], CMS [28], and LHCb [71, 72]. Of these we shall focus on the search sensitivity for long-lived sterile neutrinos at ATLAS, which is the largest experiment in de- tector volume, and can thus in principle explore the largest decay lengths. Beyond this, a series of new experiments has recently been proposed at various locations near the LHC in- teraction points (IPs), namely in alphabetical order: AL3X [35], ANUBIS [36], CODEX-b [29], FASER and FASER2 [30, 31], MATHUSLA [32–34], and MoEDAL-MAPP1 and MoEDAL-MAPP2 of the MoEDAL collaboration [37, 38]. These latter experiments, including SHiP, are all designed to specifically look for neutral long-lived particles (LLPs). We shall discuss the search potential of all the above-mentioned experiments specifically for sterile neutrinos. – 14 – In this section, we review briefly the setup of the beam and detector geometries for each experiment and introduce the Monte Carlo (MC) simulation procedure for the event simulation. We focus on the production via the rare decay of B- and D-mesons. This can proceed via either purely leptonic two-body decays, or semi-leptonic three-body decays, as discussed in section 3. Similarly, for the displaced decay of sterile neutrinos, we consider both the two-body decay into a charged lepton and a charged meson, and decays into multiple hadronic states plus a lepton, as explained in section 4. It is worth mentioning that the heavy meson M1 that is to decay into a sterile neutrino, is produced in the process pp →M1 + X and decays promptly into e.g. a sterile neutrino (X denotes the remaining decay products). Such signal events can be observed in the near detector such as ATLAS with e.g. the prompt lepton accompanying the production of M1. The long-lived sterile neutrinos decay at a macroscopic distance, where the displaced vertex (DV) is reconstructed if at least two tracks are observed stemming from the same DV inside the detector. 6 Collider and fixed-target analysis JHEP03(2021)148 We do not study the production of the sterile neutrinos from the decay of lighter mesons such as π± and kaons as these are only relevant for very light sterile neutrinos, and their simulation in Pythia 8 [73, 74] is insufficiently validated in the forward direction, which is relevant for the FASER experiments. In fact, even for D± and B± mesons, we will use FONLL [75–78] to correct the behavior of Pythia 8 in the very large pseudorapidity regime. Finally, we ignore the vector mesons decays into sterile neutrinos, as their decay width is typically many orders of magnitude larger than that of pseudoscalar mesons leading to tiny branching ratios for sterile neutrino production. Instead of performing a detailed study considering different components of the de- tectors separately, for simplicity we will take the whole detector as the fiducial volume, and make a comparison between the various experiments. Since the ATLAS detector was not designed to look for neutral LLPs, we shall add an estimate for the efficiency factor based on existing neutral LLP searches, which, however, search for heavier candidates than considered here. One potential issue relates to possible background events which, depending on the placement of the detector, may consist of long-lived SM hadron decays, cosmic rays, hadronic interaction with the detector material, etc. All the experiments considered in this study, except ATLAS, employ a far detector with a distance 5−500 meters away from the IP. The space between the IP and the far detector is usually sufficiently large to allow for the in- stallation of veto and shielding segments, as argued in refs. [29, 30, 32, 33, 35, 36, 38, 79, 80]. For MATHUSLA the rock and shielding below ground should remove the SM background. As for cosmic rays, directional cuts will be applied. To assess and compare the sensitivities of different experiments, we show 3-event isocurves which correspond to 95% confidence level (C.L.) with zero background. This is not appropriate for the ATLAS detector which has an almost 4π coverage immediately around the IP, and a large irreducible SM background is expected. Depending on the signal type, the number of such background events may vary. Instead of performing an estimate of background events for each scenario, we shall implement an estimate for the efficiency, which we discuss below. 2In this work, we consider the LHC center-of-mass energy at 14 TeV for all experiments. We assume an LHC upgrade before the experiments are online. Changing it to 13 TeV would only have a small effect on our results. 6 Collider and fixed-target analysis In addition, since the detector efficiency of the future experiments is unknown, in order to make a fair comparison, we assume a 100% reconstruction efficiency for all the experiments except ATLAS. – 15 – Experiment SHiP ATLAS AL3X ANUBIS CODEX-b Int. Lumi. 2 × 1020 POT 3000 fb−1 100 or 250 fb−1 3000 fb−1 300 fb−1 Angular Cov. 0.89% 100% 13.73% 1.79% 1% Experiment FASER FASER2 MAPP1 MAPP2 MATHUSLA Int. Lumi. 150 fb−1 3000 fb−1 30 fb−1 300 fb−1 3000 fb−1 Angular Cov. 1.1 × 10−8 1.1 × 10−6 0.17% 0.68% 3.8% Table 2. Summary of integrated luminosities for the various experiments. “POT” for SHiP stands for “Protons on Target”. We also list the simple geometric coverage for each experiment. Table 2. Summary of integrated luminosities for the various experiments. “POT” for SHiP stan for “Protons on Target”. We also list the simple geometric coverage for each experiment. JHEP03(2021)148 The search potential of these experiments, but also of other fixed-target experiments, has been investigated for example for neutralinos [81–85]. For various other theoretical scenarios, see ref. [86] for a recent review. We start with a brief introduction of the fixed-target experiment SHiP, as its beam setup is different from the other experiments, and then discuss the other experiments, which are all associated to either the ATLAS, CMS, or LHCb IP and the LHC accelerator.2 Since these experiments differ in the projected integrated luminosity, we summarize them in table 2. 6.1 SHiP The SHiP facility was proposed to make use of the high-intensity CERN SPS beam of 400 GeV protons incident on a fixed target made of e.g. a hybrid material composed of (solid) molybdenum alloy and pure tungsten [39–41]. It has not been approved yet. With a center-of-mass energy of approximately 27 GeV, large production rates of D- and B-mesons are expected. The SHiP experiment is proposed to have a cylindrical detector downstream at roughly 70 m away from the IP. The experiment is specifically designed for detecting long-lived neutral particles, which are produced from e.g. charm or bottom meson rare decays, fly an extended length, and then decay inside the detector chamber downstream, especially if the lab-frame decay length of the LLP lies within the SHiP sensitivity range. For the lifetime of the SHiP project, a total of 2×1020 protons on target (POT) are planned. At SHiP, the initial meson M1 of sterile neutrinos is produced in a hadronic collision between the beam protons and the target material. The differential production cross section is strongly forward peaked, and the M1 will have a significant forward boost. This will be passed onto the decay products, including N, the sterile neutrino. The active decay chamber is 68.8 m downstream of the target. It has a cyclindrical shape with a length of 60 m, where the first 5 m are to be used for placing background suppression vetoes. The front surface has an elliptical shape with semi-axes of 5 m and 2.5 m. The optimal sensitivity is for particles with 68.8 m < βz NγNcτN < 123.8 m , (6.1) (6.1) 68.8 m < βz NγNcτN < 123.8 m , 2In this work, we consider the LHC center-of-mass energy at 14 TeV for all experiments. We assume an LHC upgrade before the experiments are online. Changing it to 13 TeV would only have a small effect on our results. 2In this work, we consider the LHC center-of-mass energy at 14 TeV for all experiments. We assume an LHC upgrade before the experiments are online. Changing it to 13 TeV would only have a small effect on our results. – 16 – where βz N, γN are the relativistic speed along the beam axis and the Lorentz boost factor of N, respectively. 6.1 SHiP In order to study sterile neutrinos produced from the decays of D- and B-mesons, we need to know the total number of these mesons expected at SHiP in its 5 year lifetime: ND±, ND0, NDs, NB±, NB0, and NBs, respectively. These numbers can be estimated by following ref. [63]. See also the earlier work in ref. [83]. The c¯c (b¯b) production rate is 1.7 × 10−3 (1.6 × 10−7) per collision. After the fragmentation factors are taken into account, the numbers of the heavy-flavor mesons can be estimated and reproduced below from ref. [63]: JHEP03(2021)148 NSHiP D± = 1.4 × 1017, N SHiP D0 = 4.3 × 1017, N SHiP Ds = 6.0 × 1016, (6.2) NSHiP B± = 2.7 × 1013, N SHiP B0 = 2.7 × 1013, N SHiP Bs = 7.2 × 1012. (6.3) (6.2) (6.3) We note that Bc mesons are in principle also produced and may extend the upper reach in mN. However, given the much smaller production cross section, we do not take it into account. Similarly for the other LHC experiments, as discussed below. 6.2 Experiments at the LHC For ATLAS and extended programs at the ATLAS/CMS/LHCb sites, we consider pp collisions at √s = 14 TeV with equal beam energies. These experiments benefit from a beam energy that is orders of magnitude higher compared to SHiP. As a result, the mesons and the therefrom produced sterile neutrinos are much more boosted, leading to good sensitivities even for detectors that are to be installed hundreds of meters away from the IP. To perform the sensitivity estimate for experiments at ATLAS/CMS/LHCb, it is necessary to know the inclusive production rate of the heavy-flavor mesons at the HL-LHC with up to 3 ab−1 integrated luminosity. To achieve this, we follow the procedure in refs. [83, 84, 87]. The LHCb collaborations reported D-meson and B-meson production cross sections for a 13 TeV pp-collider, for certain kinematic range. Using the simulation tools FONLL [75–78] and Pythia 8 we can extrapolate these cross sections to the whole kinematic range. We find that for 3 ab−1 integrated luminosity over the full 4π solid angle the following list of numbers of the produced charm and bottom mesons: NHL-LHC D± = 2.04 × 1016, N HL-LHC D0 = 3.89 × 1016, N HL-LHC Ds = 6.62 × 1015, (6.4) NHL-LHC B± = 1.46 × 1015, N HL-LHC B0 = 1.46 × 1015, N HL-LHC Bs = 2.53 × 1014. (6.5) (6.5) For the estimate of NHL-LHC D± , the decay branching ratio of D∗± into D± is included, and for the number of B-mesons the corresponding fragmentation factors determined by Pythia 8 are used. These numbers will be used not only for the evaluation at the ATLAS experiment, but also for all the extended programs discussed below with a possible overall re-scaling by the integrated luminosity. // / 5The center of the MATHUSLA detector is at about 132 m from the IP. The area of the enclosing sphere is about 2.2 · 105 m2. The MATHUSLA detector has an base area of about 104 m2 and is tilted roughly at 63◦relative to the radial direction. 104 m2 cos(63◦)/(2.2 · 105 m2) ≈2.1%. In a more precise Monte Carlo integration we found a coverage of 3.8%. 6.2.1 FASER At the ATLAS IP, the differential cross section for the production of GeV-scale mesons is strongly peaked at large pseudorapidities, i.e. close to the beam pipe in both directions. – 17 – The production rate of light neutral LLPs, resulting from the decay of the mesons, should then also be peaked in the large pseudorapidity regime. A far detector known as FASER (Forward Search ExpeRiment) [30, 31] has been proposed, which is designed to specifically make use of this feature. It has been officially approved by CERN and should be collecting data during Run 3 of the LHC.3 It is placed in the existing TI12 tunnel at a distance of 480 m from the ATLAS IP and has a cylindrical shape exactly aligned with the beam collision axis, but slightly offof the beam due to the curvature of the accelerator. The FASER detector has a cylindrical radius of 10 cm and a length of 1.5 m, and the expected integrated luminosity is 150 fb−1. The corresponding angular coverage is η ∈[9.17, +∞] in pseudorapidity and full 2π in the azimuthal angle. JHEP03(2021)148 After Run 3 is finished, FASER is currently planned to be upgraded to a larger version known as FASER2, to be under operation during the HL-LHC era, collecting up to 3 ab−1 of data [31], and located in the same place. Its geometry is specified as a cylinder with 1 m radius and 5 m length, which is 300x larger by volume, than FASER. The pseudorapidity coverage is correspondingly enlarged to η ∈[6.86, +∞] while the azimuthal angle remains fully covered. In this work, we will study the search potential of both FASER and FASER2 for sterile neutrinos as neutral LLPs. As mentioned earlier and discussed in ref. [84], Pythia 8 is not well validated in the large pseudorapidity regime for the differential production cross section of charm and bottom mesons. To solve this issue, we re-scale the meson production cross section in Pythia 8 at different ranges of the transverse momentum and pseudorapidity by using the more reliable results given by FONLL. 4See also the webpage of the experiment: https://mathusla-experiment.web.cern.ch/. 5 3See the official website of the experiment FASER: https://faser.web.cern.ch/. 4 6.2.4 CODEX-b An external detector extension has also been proposed at the IP8 of the LHCb experiment. CODEX-b (COmpact Detector for EXotics at LHCb) [29] is designed as a cubic box of dimensions 10 m × 10 m × 10 m. Occupying an empty space with a distance ∼25 m from the LHCb IP, it covers the pseudorapidity range of η ∈[0.2, 0.6] with the azimuthal angle coverage of ∼6.4%. The total geometric coverage of the solid-angle is about 1%. 6.2.3 ANUBIS It has recently been proposed [36] to construct a detector, named ANUBIS (AN Underground Belayed In-Shaft search experiment), in one of the service shafts just above the ATLAS or CMS IP. Consequently, a total of 3 ab−1 integrated luminosity from the LHC is projected. Similarly to the detectors discussed above, it also has a cylindrical shape however with the axis oriented in the vertical direction. The cyclinder diameter is 18 m and the length is 56 m. The axis of the cylinder runs from the middle point of the bottom: (xb, yb, zb) = (0, 24 m, 14 m) to the top (xt, yt, zt) = (0, 80 m, 14 m), where z is along the beam axis, x is horizontally transverse, and y is vertically transverse, and the IP is at (x, y, z) = (0, 0, 0). Please refer to refs. [36, 62] for a sketch. MC integration finds the angular coverage of ANUBIS to be 1.79% [87]. JHEP03(2021)148 6.2.2 MATHUSLA A much larger experiment called “MATHUSLA” (MAssive Timing Hodoscope for Ultra Stable neutraL pArticles) has been suggested to be constructed at the surface above the CMS experiment [32–34].4 It is proposed to be built for the HL-LHC phase with 3 ab−1 integrated luminosity. With a box shape, it has a base area of 100 m × 100 m and a height of 25 m. Relative to the CMS IP, the front edge of the detector should be horizontally shifted along the beam axis by 68 m, and vertically upwards by 60 m. Despite its huge size, the large distance of MATHUSLA from the IP still leads to a small geometric coverage. It corresponds to a solid angle or geometric coverage of about 3.8%.5 Nevertheless, it has been shown to be one of the far detectors at the LHC that may have the strongest reach in the very small active-sterile neutrino mixing at |Ue4|2 ∼10−9, when only the weak interaction is considered [34]. – 18 – 6.2.5 MoEDAL-MAPP MAPP (MoEDAL’s Apparatus for Penetrating Particles) is proposed as one sub-detector of the MoEDAL experiment [37, 38] at the IP8 of LHCb, and designed for searching for neutral LLPs. Similar to FASER, the MAPP experiment will have a significant upgrade in a second version. MAPP1 is a rather small detector of volume ∼130 m3, currently under deployment and expected to collect data during LHC Run 3 with up to 30 fb−1 integrated luminosity. It is roughly 55 m from the IP8 at a polar angle 5◦from the beam. During the HL-LHC era, the MAPP2 program is planned to be under operation at IP8 until the end of Run 5, accumulating up to 300 fb−1 of data. It is designed to occupy almost the whole of the UGC8 gallery in the LHC tunnel complex, taking up a volume of about 430 m3. With a larger integrated luminosity and a bigger volume, MAPP2 is predicted to have higher sensitivity. The two detectors cover about 0.17% and 0.68% of the total solid angle [87], respectively. 6.2.7 ATLAS In the previous sections we have discussed proposed new experiments which are specifically designed to look for long-lived particles. They are typically placed some distance away from the various IPs at the LHC or, in the case of SHiP, designed as a fixed-target experiment with a long decay path. In e.g. ref. [83] some of us considered the search for light long-lived particles at ATLAS.6 ATLAS can study decays upto a length of about p 112 + (43/2)2 = 24 m, where 11 m is the cylindrical radius and 24 m is half the detector length. Over this length, as we discuss below in more detail, the fraction 1−exp[−24 m/(βγcτ)] of the LLP’s decay where τ and γ denote the LLP lifetime and boost factor, respectively, and β is the relativistic speed of the particle. However, ATLAS offers almost 4π in angular coverage, which is significantly larger than the other detectors at the LHC. In ref. [83], we found that for 100% signal efficiency, an integrated luminosity of 250 fb−1, and assuming zero background, ATLAS is competitive with or slightly better than SHiP for the LLPs produced from B-mesons decays, and was somewhat worse in the case of D-mesons. JHEP03(2021)148 Here we describe in more detail the geometrical parameters we use for the fiducial volume of the ATLAS detector. It has a cylindrical shape with inner (outer) radius of 0.0505 m (11 m) corresponding to the beginning of the inner detector (the end of the muon spectrometer), and a length of 43 m. In principle, even if a DV is inside the beam pipe, as long as its distance from the IP is larger than the detector spatial resolution and consists of displaced tracks, it can be reconstructed. However, to be more conservative, we choose to include only DVs that are located inside the detector volume. We take 3 ab−1 as the benchmark value for the integrated luminosity over the lifetime fo the HL-LHC. As we have mentioned, all the above proposed new experiments are specifically designed to look for light long-lived particles. They are thus further away from the LHC IPs and shielded from many SM backgrounds generated at the IP. All the same they will all have separate background issues, depending on where they are located. MATHUSLA is to be installed on the ground and thus highly susceptible to cosmic rays. 6.2.6 AL3X AL3X (A Laboratory for Long-Lived eXotics) was proposed in ref. [35] to be built at the LHC IP2 where the ALICE experiment sits. Placed at a horizontal distance along the beam line of 5.25 m from the IP, the detector has a cylindrical shape aligned with and surrounding the beam line, corresponding to a full azimuthal coverage. The proposed inner (outer) radius is 0.85 m (5 m) with the length 12 m. This gives a pseudo-rapidity coverage of η ∈[0.9, 3.7]. The authors of ref. [35] proposed two values of the integrated luminosity, 100 fb−1 and 250 fb−1, in order to accommodate practical concerns including the move of the IP, beam quality, and investigation of background events. Here we focus on the benchmark value of 250 fb−1 integrated luminosity. – 19 – 6We focus here on the ATLAS experiment, which is by volume the larger experiment. In principle this study could be performed for CMS, as well. See ref. [88] for a related study on dark photons at LHCb. 6.2.7 ATLAS ANUBIS is in a shaft which has minimal overhead shielding. FASER is far down along the tunnel, but still close to the beam pipe. In order to compare these experiments we have for now assumed that they can tackle the issues concerning background, and assumed zero background for all. The precise design of these detectors is also not yet well-established, except for the first phase of FASER. We thus furthermore assume 100% signal efficiency. All this does not hold for ATLAS (or CMS, of course). ATLAS is a well-established ex- periment, operating in the immediate vicinity of the IP. There is purposely no shielding, as a priori all events are of interest. With respect to light long-lived particles there are thus large backgrounds which must be dealt with. Any cuts which are imposed to reduce the background, will also affect the signal efficiency, most likely in a significant manner. In order to compare a search at ATLAS with the other experiments we must impose a realistic signal efficiency, to take this into account. To our knowledge at the moment, there is no dedicated study at ATLAS or CMS for the scenarios we are considering here. We discuss several related analyses and estimate a signal efficiency based on this. 6We focus here on the ATLAS experiment, which is by volume the larger experiment. In principle this study could be performed for CMS, as well. See ref. [88] for a related study on dark photons at LHCb. – 20 – In ref. [89], ATLAS considered the following scenario proposed in ref. [90]. A Higgs boson decays to two dark fermions, which in turn decay to one or two dark photons plus an invisible hidden lightest stable particle. The dark photons are the long-lived particles and decay either to a pair of muons, or a pair of electrons/pions (light hadrons). Dark photon masses between 0.4 and 3.5 GeV are considered, i.e. similar to our sterile neutrino mass range. However the Higgs boson masses are 125 or 800 GeV and thus the dark photons would have a much higher boost than our sterile neutrino’s. For the lighter Higgs mass and the purely hadronic decay of the dark photon ATLAS finds a signal efficiency of at best 5·10−5 for cτ ≈35 mm, and dropping offrapidly for smaller or larger cτ. In ref. [91], ATLAS considered the following scenario. 6.2.7 ATLAS A Higgs boson decays to a pair of neutral long-lived scalars, which in turn each decay to 2 jets, one in the inner detector and one in the muon spectrometer, thus utilizing different parts of the ATLAS detector. For the lightest mass scenario the Higgs boson is 125 GeV and the scalar is 8 GeV. A detector efficiency of 3·10−5 is found, similar to the other analysis. In ref. [92] ATLAS considered a related scenario with scalar masses down to 5 GeV. For a Higgs boson of 125 GeV, and a scalar of 5 GeV with a decay length of 75 cm they find a signal efficiency of 7·10−4, somewhat better than in the other studies. JHEP03(2021)148 In all these analyses, ATLAS searches for pairs of produced particles. This reduces background but also efficiency. Overall we have applied a from the ATLAS point of view somewhat optimistic flat signal efficiency factor of 10−3 to all the ATLAS searches. In addition we assume that the corresponding cuts reduce the background to zero. 6.3 Monte-Carlo simulation We perform the MC simulation with the tool Pythia 8.243 [73, 74], in order to extract the kinematics and to estimate the number of signal events. We express the number of sterile neutrinos, N, produced as Nprod N = X i NMi · Br(Mi →N + X), (6.6) (6.6) where Mi is summed over all mesons that can decay to N in a given scenario. “Br” stands for decay branching ratio. NMi is the number of initial mesons, Mi, produced in the initial collisions at the LHC or for SHiP. The number of sterile neutrino decays in a detector volume Ndec N can then be esti- mated by taking into account the boost factor and traveling direction of N, geometries of the detector, and the decay branching ratio of sterile neutrinos into the signal final-state particles. For the latter, we consider all the decay channels except for the fully invisible state, which contains solely three neutrinos, and is mediated by the SM weak interaction. We use the expressions Ndec N = Nprod N · ⟨P[N in f.v.]⟩· Br(N →signal), (6.7) ⟨P[N in f.v.]⟩≡ 1 NMC N NMC N X i=1 P[Ni in f.v.], (6.8) (6.7) (6.8) – 21 – – 21 – where ⟨P[N in f.v.]⟩denotes the average probability of all the simulated sterile neutrinos to decay inside the fiducial volume (“f.v.”) and P[Ni in f.v.] is the individual probability of the i−th simulated sterile neutrino to decay in the f.v., discussed in more detail below. NMC N is the total number of sterile neutrinos N generated in the simulation. For all the experiments except MAPP1 and MAPP2, we use formulas for calculating the individual decay probability with the exponential decay distribution, extracted from existing references [62, 83–85]. As input we use the boosted decay length and the traveling direction of each simulated sterile neutrino, denoted by λi = βi γi c τN, where βi is the speed and γi the boost factor. For the MoEDAL-MAPP detectors, following ref. [87] we implement a code which deter- mines whether each simulated sterile neutrino travels in the direction pointing towards the detector and if so returns L1i and L2i, where L1i denotes the distance from the IP to the position where the i−th sterile neutrino would enter the detector, and Li2 the distance the i−th sterile neutrino would travel across the detector, if it leaves the detector without having decayed. 6.3 Monte-Carlo simulation If the travel direction of the long-lived sterile neutrino points towards the detector, we compute P[Ni in f.v.] for the MoEDAL-MAPP detectors through JHEP03(2021)148 P[Ni in f.v.] = e−L1i/λi · (1 −e−L2i/λi). (6.9) (6.9) We use the modules “HardQCD:hardccbar” and “HardQCD:hardbbbar” of Pythia 8 to simulate the production of the charm and bottom mesons, respectively, including the processes q¯q, gg →c¯c/b¯b. For each benchmark scenario, we simulate 106 events of the corresponding process, and fix the initial-state mesons to decay to the various channels, mediated by both the SM weak interaction and the EFT operators, with the corresponding decay branching ratios. From the MC simulation with Pythia 8, we obtain the average decay probability from which we calculate Ndec N in eq. (6.7). We emphasize that for the partial decay widths of the heavy mesons into N and of the N into light mesons, we take into account the weak interaction via active-sterile neutrino mixing, the EFT operator(s), and also the interference between them. The computation for the production and decay processes of sterile neutrinos are presented in sections 3 and 4 and in the appendices. 7 Numerical results To present the results of this collider study in a compact and representative manner we consider a subset of possible EFT operators and focus on the three scenarios described in section 5. For scenario 1, the minimal scenario, there is no EFT operator involved, and we consider the full standard model charged- and neutral-currents mediated via the active- sterile neutrino mixing. For scenarios 2 and 3, which involve EFT operators, we must specify their flavor. In these scenarios we consider 5 different flavor assignments. Each assignment involves two EFT operators of different quark flavors. All EFT operators are dimension-6, and we drop the (6) superscript in the following. First, we fix the production mode via the “production operator” (CP)ij, with associated Wilson coefficients. We shall consider two cases for the indices ij, which indicate the up- and down-type quark genera- tions considered in a flavor benchmark, respectively. The choices of the flavors should lead – 22 – to charm and bottom meson decays: to charm and bottom meson decays: to charm and bottom meson decays: to charm and bottom meson decays: ( (CP)21 : D →N + e (+X), (CP)13 : B →N + e (+X). (7.1) Sterile Neutrino Production Modes : ( (CP)21 : D →N + e (+X), (CP)13 : B →N + e (+X). (7.1) (7.1) Here X indicates a potential final state meson. See examples below. Second, we simul- taneously turn on another EFT operator7 the “decay operator” (CD)ij, which leads to the decay of sterile neutrinos via semi-leptonic processes. Here, the ij indicate the flavor content of the final state meson. We shall consider several decay modes Here X indicates a potential final state meson. See examples below. Second, we simul- taneously turn on another EFT operator7 the “decay operator” (CD)ij, which leads to the decay of sterile neutrinos via semi-leptonic processes. Here, the ij indicate the flavor content of the final state meson. We shall consider several decay modes      (CD)11 : N →π± + e∓, ρ± + e∓, (CD)12 : N →K± + e∓, K∗± + e∓, (CD)21 : N →D± + e∓, D∗± + e∓. (7.2) Sterile Neutrino Decay Modes :      (CD)11 : N →π± + e∓, ρ± + e∓, (CD)12 : N →K± + e∓, K∗± + e∓, (CD)21 : N →D± + e∓, D∗± + e∓. 7It is possible to have only one non-vanishing operator e.g. C11 SRR = 4C11 TRR or C11 VRR, leading to ρ± decaying to N +e± and N decaying to π± +e∓. However, such scenarios probe only a small sterile neutrino mass range and in addition require the decaying meson to be a vector particle. This results in a too small sensitivity reach because of the small production rate and large decay width of the vector mesons. 7 Numerical results (7.2) JHEP03(2021)148 (7.2) Both the production and decay will be induced by various operators with associated Wilson coefficients, which we discuss in detail below. For all scenarios we include the production and decay of sterile neutrinos via the SM weak interaction (see section 5 for details) and the corresponding interference terms with the EFT operators. For the theoretical scenarios 2 and 3 we impose the type-I Seesaw relation to include weak interaction contributions through minimal mixing, see section 5. As indicated in eq. (7.1), we only include sterile neutrino production via B and D decays, also for lighter sterile neutrinos with masses mN < mK, mπ, the kaon and pion masses, respectively. We do not include possible production via kaon or pion decays for the following reasons. Despite the larger production rates of these mesons, the simulation of soft pions is not well validated in quick MC simulation tools. Furthermore, the kaons are long-lived, leading to further complications. Finally, sterile neutrinos produced from pions and kaons are necessarily light, resulting in limited sensitivity reach in mN. To summarize, while we show results for light sterile neutrinos in the following, these must be taken as conservative as we underestimate the number of the produced sterile neutrinos from pion and kaon decays both via the SM weak interaction as well as via the “decay operator” CD. 7.1 The minimal scenario In the minimal scenario, the interactions are purely mediated by the W- and Z-bosons via the active-sterile neutrino mixing. Using the analytical expressions given in the previous sections for the production and decay of the sterile neutrino, we estimate the sensitivity reach of the experiments discussed in section 6. We present the results in figure 6, shown in the plane |Ue4|2 vs. mN. Here, we lift the requirement of the type-I seesaw relation |Ue4|2 ≃ mνe/mN, and treat the mixing angle and the sterile neutrino mass as two independent free parameters. The light gray area shows the present bounds obtained by various experiments including the searches from CHARM [93], PS191 [94], JINR [95], and DELPHI [96]. The dark 7It is possible to have only one non-vanishing operator e.g. C11 SRR = 4C11 TRR or C11 VRR, leading to ρ± decaying to N +e± and N decaying to π± +e∓. However, such scenarios probe only a small sterile neutrino mass range and in addition require the decaying meson to be a vector particle. This results in a too small sensitivity reach because of the small production rate and large decay width of the vector mesons. – 23 – Figure 6. Results for the minimal scenario with the sterile neutrino mixed solely with the electron neutrino. JHEP03(2021)148 Figure 6. Results for the minimal scenario with the sterile neutrino mixed solely with the electron neutrino. gray area corresponds to the part excluded by big bang nucleosynthesis (BBN) [97, 98]. We also show a brown band of “Type-I Seesaw target region” for mνe between 0.05 eV and 0.12 eV with the relation |Ue4|2 ≃mνe/mN. These two limits are derived from neutrino oscillation and cosmological observations, respectively. The former finds that there is at least one active neutrino mass eigenstate of mass at least 0.05 eV [99] while the latter imposed an upper limit of 0.12 eV for the sum of the active neutrino masses [100]. The sensitivity reaches of the various experiments have been determined in the lit- erature [31, 33, 61, 62, 85, 101], except for the MAPP1 and MAPP2 experiments, for which we present the estimate for the sensitivity reach for the first time. Our estimate for the ATLAS experiment considers an integrated luminosity of 3 ab−1 and takes 3000 signal events before taking into account an universal efficiency factor 10−3 as the 95% C.L. exclusion limit. 7.1 The minimal scenario To the best of our knowledge, a similar estimate for sterile neutrinos in the minimal scenario produced from heavy-flavor mesons rare decays has not been conducted for ATLAS. See ref. [102] for a related study within the minimal model, with the sterile neutrino pro- duced from W-decays, however with promptly decaying sterile neutrinos. Furthermore, in ref. [103] ATLAS investigated a sterile neutrino mixing with νµ and with a delayed decay, i.e. a displaced vertex, as well as a promptly decaying sterile neutrino, which mixes with νe however only for mN ≳6 GeV. For the other experiments, we assume zero background and 100% detector efficiency. Hence we take 3 signal events as the 95% C.L. exclusion limit. Comparing the sensitivity reach of the experiments shown in figure 6 with those from the literature, we find a good agreement in most cases. For the ANUBIS exclusion limits, our results shown in figure 6 are inferior by a factor ∼3.5, to those given in ref. [62]. This difference is due to a corrected meson-production-rate and sterile-neutrino-decay-width calculation. Given the general agreement with the existing results in the literature, we proceed to evaluate the sensitivities of these experiments to a set of benchmark scenarios, where the sterile neutrino interactions with the SM particles are enhanced by heavy new physics, encoded by EFT operators. There are a large number of possibilities for the flavor structure – 24 – of the EFT operators. Here we consider a few representative flavor choices, to get an understanding of the general features and the sensitivity reach of various experiments. The calculations can easily be repeated for other flavor choices, for instance those inspired from specific UV-complete scenarios. We note that in the following EFT flavor benchmarks, with the choice of the canonical type-I Seesaw relation, mN ≲1 GeV appears to be disfavored by BBN considerations. However, the inclusion of the EFT operator CD can reduce the lifetime of the sterile neutrinos, possibly circumventing BBN constraint and leading to a potential lower bound on the EFT Wilson coefficients. Different flavor assignments result in different final-state particles, affecting the primordial helium and deuterium abundances to different extents. A detailed study is necessary to investigate the limits that can be set from BBN consideration on EFT operators and we do not present BBN exclusion bands below. JHEP03(2021)148 7.2 Flavor benchmark 1 Summary of flavor benchmark 1 for the theoretical scenarios 2 and 3 of section 5, respectively. X denotes any additional final state particles. Flavor benchmark 1.2 Flavor benchmark 1.3 production operator: CP C21 SRR = 4C21 TRR C21 VLR decay operator: CD C11 SRR = 4C11 TRR C11 VLR production process via CP D±/D0/Ds →N + e±(+X) decay process via CD N →π± + e∓, ρ± + e∓ Table 3. Summary of flavor benchmark 1 for the theoretical scenarios 2 and 3 of section 5, respectively. X denotes any additional final state particles. Table 3. Summary of flavor benchmark 1 for the theoretical scenarios 2 and 3 of section 5, respectively. X denotes any additional final state particles. Table 3. Summary of flavor benchmark 1 for the theoretical scenarios 2 and 3 of section 5, respectively. X denotes any additional final state particles. mN = 1.0 GeV 10-7 10-6 10-5 10-4 10-3 10-2 10-1 10-7 10-6 10-5 10-4 10-3 10-2 10-1 CSRR 21 =4· CTRR 21 CSRR 11 =4· CTRR 11 SHIP:2×1020 POT ATLAS: 3 ab-1 AL3X: 250 fb-1 ANUBIS: 3 ab-1 CODEX -b: 300 fb-1 FASER: 150 fb-1 FASER2: 3 ab-1 MAPP1: 30 fb-1 MAPP2: 300 fb-1 MATHUSLA: 3 ab-1 mN = 1.0 GeV 10-7 10-6 10-5 10-4 10-3 10-2 10-1 10-7 10-6 10-5 10-4 10-3 10-2 10-1 CVLR 21 CVLR 11 SHIP:2×1020 POT ATLAS: 3 ab-1 AL3X: 250 fb-1 ANUBIS: 3 ab-1 CODEX -b: 300 fb-1 FASER: 150 fb-1 FASER2: 3 ab-1 MAPP1: 30 fb-1 MAPP2: 300 fb-1 MATHUSLA: 3 ab-1 0.0 0.5 1.0 1.5 2.0 10-8 10-7 10-6 10-5 10-4 10-3 10-2 10-1 mN [GeV] CSRR 21 =4· CTRR 21 =CSRR 11 =4· CTRR 11 SHIP:2×1020 POT FASER: 150 fb-1 ATLAS: 3 ab-1 FASER2: 3 ab-1 AL3X: 250 fb-1 MAPP1: 30 fb-1 ANUBIS: 3 ab-1 MAPP2: 300 fb-1 CODEX -b: 300 fb-1 MATHUSLA: 3 ab-1 0.0 0.5 1.0 1.5 2.0 10-8 10-7 10-6 10-5 10-4 10-3 10-2 10-1 mN [GeV] CVLR 21 =CVLR 11 SHIP:2×1020 POT FASER: 150 fb-1 ATLAS: 3 ab-1 FASER2: 3 ab-1 AL3X: 250 fb-1 MAPP1: 30 fb-1 ANUBIS: 3 ab-1 MAPP2: 300 fb-1 CODEX -b: 300 fb-1 MATHUSLA: 3 ab-1 Figure 7. Results for the sensitivity reach for flavor benchmark 1. On the left we have the leptoquark-like case, and on the right the VLR case. For each case the upper figure shows CD vs. 7.2 Flavor benchmark 1 CP, where as the lower case is for CP = CD and shows CP vs. mN. The color code for the various experiments is shown in each figure. mN = 1.0 GeV 10-7 10-6 10-5 10-4 10-3 10-2 10-1 10-7 10-6 10-5 10-4 10-3 10-2 10-1 CVLR 21 CVLR 11 SHIP:2×1020 POT ATLAS: 3 ab-1 AL3X: 250 fb-1 ANUBIS: 3 ab-1 CODEX -b: 300 fb-1 FASER: 150 fb-1 FASER2: 3 ab-1 MAPP1: 30 fb-1 MAPP2: 300 fb-1 MATHUSLA: 3 ab-1 JHEP03(2021)148 mN = 1.0 GeV 10-7 10-6 10-5 10-4 10-3 10-2 10-1 10-7 10-6 10-5 10-4 10-3 10-2 10-1 CSRR 21 =4· CTRR 21 CSRR 11 =4· CTRR 11 SHIP:2×1020 POT ATLAS: 3 ab-1 AL3X: 250 fb-1 ANUBIS: 3 ab-1 CODEX -b: 300 fb-1 FASER: 150 fb-1 FASER2: 3 ab-1 MAPP1: 30 fb-1 MAPP2: 300 fb-1 MATHUSLA: 3 ab-1 0.0 0.5 1.0 1.5 2.0 10-8 10-7 10-6 10-5 10-4 10-3 10-2 10-1 mN [GeV] CVLR 21 =CVLR 11 SHIP:2×1020 POT FASER: 150 fb-1 ATLAS: 3 ab-1 FASER2: 3 ab-1 AL3X: 250 fb-1 MAPP1: 30 fb-1 ANUBIS: 3 ab-1 MAPP2: 300 fb-1 CODEX -b: 300 fb-1 MATHUSLA: 3 ab-1 0.0 0.5 1.0 1.5 2.0 10-8 10-7 10-6 10-5 10-4 10-3 10-2 10-1 mN [GeV] CSRR 21 =4· CTRR 21 =CSRR 11 =4· CTRR 11 SHIP:2×1020 POT FASER: 150 fb-1 ATLAS: 3 ab-1 FASER2: 3 ab-1 AL3X: 250 fb-1 MAPP1: 30 fb-1 ANUBIS: 3 ab-1 MAPP2: 300 fb-1 CODEX -b: 300 fb-1 MATHUSLA: 3 ab-1 Figure 7. Results for the sensitivity reach for flavor benchmark 1. On the left we have the leptoquark-like case, and on the right the VLR case. For each case the upper figure shows CD vs. CP, where as the lower case is for CP = CD and shows CP vs. mN. The color code for the various experiments is shown in each figure. EFT operators becomes sub-leading with respect to the contributions from minimal mix- ing. This roughly happens for couplings CP,D ≤10−5, indicating that EFT operators can dominate over minimal interactions for a new physics scale of Λ ∼ p v2/CP,D = O(80) TeV. This scale does not include possible small dimensionless couplings or loop suppressions of the EFT operators and is thus only indicative of the sensitivity range. For some experiments (CODEX-b, MAPP1, and FASER), there is no sensitivity in the upper left corner (small CP and large CD). 7.2 Flavor benchmark 1 We consider the theoretical scenarios 2 and 3 of section 5 for a specific flavor choice. We focus on sterile neutrino production through decay of D-mesons, and thus consider the production operator (CP)21. For scenario 2, the leptoquark scenario, for CP and CD we consider scalar and tensor operators that are related through CSRR = 4CTRR. For scenario 3 corresponding to anomalous vector interactions, the production and decay operators are both CVLR. The following decays then produce sterile neutrinos D± →e± + N, D± →π0 + e± + N, D± →ρ0 + e± + N, (7.3) D0 →π± + e∓+ N, D0 →ρ± + e∓+ N, Ds →K(∗)0 + e± + N . (7.4) (7.3) (7.4) We are sensitive to sterile neutrino masses mN < mD −me. For the decay operator we choose (CD)11 resulting in the decays N →e± + π∓, and N →e± + ρ∓. (7.5) (7.5) The essential features of this benchmark are summarized in table 3. In addition, we include production and decay modes via minimal mixing which extends both the upper and lower reach in mN. Figure 7 presents the sensitivity reach of all considered experiments for the flavor benchmark 1. The left panels correspond to theory scenario 2 (leptoquark) and the right panels to scenario 3 (anomalous vector interactions). In the upper row we plot the value of the decay operator CD vs. the production operator CP for a fixed sterile neutrino mass mN = 1 GeV. In the bottom row we have fixed CD = CP and show the dependence of the sensitivity of the experiments on CD = CP and the sterile neutrino mass. Both the top and bottom panels show that the sensitivity reach in scenarios 2 and 3 are rather similar, indi- cating that the specific Lorentz structure of the EFT interactions does not greatly affect the overall sensitivity. In the upper-left and lower-right part of the top plots the curves become horizontal and vertical, respectively. In this part of the parameter space either the pro- duction (horizontal, upper left) or decay (vertical, lower right) of sterile neutrinos through – 25 – Flavor benchmark 1.2 Flavor benchmark 1.3 production operator: CP C21 SRR = 4C21 TRR C21 VLR decay operator: CD C11 SRR = 4C11 TRR C11 VLR production process via CP D±/D0/Ds →N + e±(+X) decay process via CD N →π± + e∓, ρ± + e∓ Table 3. 7.2 Flavor benchmark 1 This is caused by the rather weak detector acceptance of these experiments for the light sterile neutrinos produced from D-mesons decays. In the lower set of plots, we assume equal CP = CD, and vary the sterile neutrino mass mN and jointly the Wilson coefficients. The plots for scenarios 2 and 3 look rather similar – 26 – although in scenario 2, the sensitivity to smaller sterile neutrino masses is a bit better. The most sensitive experiment would clearly be SHiP, which reaches roughly CP = CD ∼2·10−5 in the range 0.5 GeV < mN < 1.8 GeV. For couplings at this level, both the production and decay of sterile neutrinos are still dominated by the EFT operators and minimal mixing plays a sub-leading role. The sensitivity then depends a lot on the experimental setup under consideration. FASER reaches couplings at the 10−3 level (corresponding to scales of roughly 8 TeV in Λ). Next in sensitivity is MAPP1 at 3 · 10−4, and then FASER2, MAPP2, CODEX-b, and ATLAS at roughly the 10−4 level. MATHUSLA, ANUBIS, and AL3X, should be sensitive to couplings down to around 5 · 10−5, and finally SHiP at the aforementioned CP,D ≤2 · 10−5 level. The hierarchy in sensitivity reach shown by the various experiments is essentially the same in scenarios 2 and 3, and is very similar to the hierarchy in the minimal scenario (see figure 6) for masses mN < mD. JHEP03(2021)148 Again, the sensitivity reach in mN goes beyond the kinematical thresholds set by the pion and D-meson masses. For mN < mπ, sterile neutrinos can still decay leptonically via the weak interaction. Thus larger CP values can still lead to detectable rates of sterile neutrino production. We stress again that for mN < mπ, we underestimate the production of sterile neutrinos by omitting production via pions and kaons. For mN > mD, sterile neutrinos for this benchmark can still be produced from the B-meson decays via the weak current. If CP and CD are large enough, sufficiently many sterile neutrinos are produced. Furthermore, specifically for AL3X, and SHiP, and to a lesser extent MATHUSLA, the boosted decay lengths of these sterile neutrinos can fall into the respective geometric sensitivity ranges. This corresponds to the extended sensitive parameter regions, as shown on the right-hand side of the two lower plots of figure 7. 7.3 Flavor benchmark 2 In flavor benchmark 2 we choose a different flavor-structure for the decay Wilson coefficient. For the production operator we take again (CP)21 but for the decay now set (CD)12. This leads to sterile neutrino decay processes N →e± + K∓, and N →e± + K∗∓. (7.6) (7.6) Table 4 summarizes the details of this scenario. Table 4 summarizes the details of this scenario. Table 4 summarizes the details of this scenario. The sensitivity limits for this scenario are shown in figure 8 with the same format as in figure 7. On the left we consider CP = C21 SRR = 4C21 TRR, and on the right CP = C21 VLR. Similarly for the decay we have on the left CD = C12 SRR = 4C12 TRR and on the right CD = C12 VLR. In the upper row, we show plots in the plane CD vs. CP with mN at 1.2 GeV. Similar features as in the previous scenario are observed and there seems hence to be little sensitivity in the event rates to the specific final-state meson. The hierarchy in sensitivity of the different experiments is also very similar. In the lower panels we see some differences compared to flavor benchmark 1. The sensitivity to lighter mN is reduced due to the need to produce a heavier kaon in the final state. For mN < mK the EFT operators no longer contribute to the decay rate and the SM weak interaction becomes the only mechanism for sterile neutrinos to decay and be detected. This – 27 – Flavor benchmark 2.2 Flavor benchmark 2.3 production operator: CP C21 SRR = 4C21 TRR C21 VLR decay operator: CD C12 SRR = 4C12 TRR C12 VLR production process via CP D±/D0/Ds →N + e±(+X) decay process via CD N →K± + e∓, K∗± + e∓ Table 4. Summary of flavor benchmark 2. Table 4 summarizes the details of this scenario. mN = 1.2 GeV 10-7 10-6 10-5 10-4 10-3 10-2 10-1 10-7 10-6 10-5 10-4 10-3 10-2 10-1 CSRR 21 =4· CTRR 21 CSRR 12 =4· CTRR 12 SHIP:2×1020 POT ATLAS: 3 ab-1 AL3X: 250 fb-1 ANUBIS: 3 ab-1 CODEX -b: 300 fb-1 FASER: 150 fb-1 FASER2: 3 ab-1 MAPP1: 30 fb-1 MAPP2: 300 fb-1 MATHUSLA: 3 ab-1 mN = 1.2 GeV 10-7 10-6 10-5 10-4 10-3 10-2 10-1 10-7 10-6 10-5 10-4 10-3 10-2 10-1 CVLR 21 CVLR 12 SHIP:2×1020 POT ATLAS: 3 ab-1 AL3X: 250 fb-1 ANUBIS: 3 ab-1 CODEX -b: 300 fb-1 FASER: 150 fb-1 FASER2: 3 ab-1 MAPP1: 30 fb-1 MAPP2: 300 fb-1 MATHUSLA: 3 ab-1 0.0 0.5 1.0 1.5 2.0 10-8 10-7 10-6 10-5 10-4 10-3 10-2 10-1 mN [GeV] CSRR 21 =4· CTRR 21 =CSRR 12 =4· CTRR 12 SHIP:2×1020 POT FASER: 150 fb-1 ATLAS: 3 ab-1 FASER2: 3 ab-1 AL3X: 250 fb-1 MAPP1: 30 fb-1 ANUBIS: 3 ab-1 MAPP2: 300 fb-1 CODEX -b: 300 fb-1 MATHUSLA: 3 ab-1 0.0 0.5 1.0 1.5 2.0 10-8 10-7 10-6 10-5 10-4 10-3 10-2 10-1 mN [GeV] CVLR 21 =CVLR 12 SHIP:2×1020 POT FASER: 150 fb-1 ATLAS: 3 ab-1 FASER2: 3 ab-1 AL3X: 250 fb-1 MAPP1: 30 fb-1 ANUBIS: 3 ab-1 MAPP2: 300 fb-1 CODEX -b: 300 fb-1 MATHUSLA: 3 ab-1 Figure 8. Results for flavor benchmark 2. The format is the same as in figure 7. Flavor benchmark 2.2 Flavor benchmark 2.3 production operator: CP C21 SRR = 4C21 TRR C21 VLR decay operator: CD C12 SRR = 4C12 TRR C12 VLR production process via CP D±/D0/Ds →N + e±(+X) decay process via CD N →K± + e∓, K∗± + e∓ Table 4. Summary of flavor benchmark 2. Table 4. Summary of flavor benchmark 2. Table 4. Summary of flavor benchmark 2. Table 4. Summary of flavor benchmark 2. Table 4 summarizes the details of this scenario. mN = 1.2 GeV 10-7 10-6 10-5 10-4 10-3 10-2 10-1 10-7 10-6 10-5 10-4 10-3 10-2 10-1 CVLR 21 CVLR 12 SHIP:2×1020 POT ATLAS: 3 ab-1 AL3X: 250 fb-1 ANUBIS: 3 ab-1 CODEX -b: 300 fb-1 FASER: 150 fb-1 FASER2: 3 ab-1 MAPP1: 30 fb-1 MAPP2: 300 fb-1 MATHUSLA: 3 ab-1 mN = 1.2 GeV 10-7 10-6 10-5 10-4 10-3 10-2 10-1 10-7 10-6 10-5 10-4 10-3 10-2 10-1 CSRR 21 =4· CTRR 21 CSRR 12 =4· CTRR 12 SHIP:2×1020 POT ATLAS: 3 ab-1 AL3X: 250 fb-1 ANUBIS: 3 ab-1 CODEX -b: 300 fb-1 FASER: 150 fb-1 FASER2: 3 ab-1 MAPP1: 30 fb-1 MAPP2: 300 fb-1 MATHUSLA: 3 ab-1 JHEP03(2021)148 0.0 0.5 1.0 1.5 2.0 10-8 10-7 10-6 10-5 10-4 10-3 10-2 10-1 mN [GeV] CVLR 21 =CVLR 12 SHIP:2×1020 POT FASER: 150 fb-1 ATLAS: 3 ab-1 FASER2: 3 ab-1 AL3X: 250 fb-1 MAPP1: 30 fb-1 ANUBIS: 3 ab-1 MAPP2: 300 fb-1 CODEX -b: 300 fb-1 MATHUSLA: 3 ab-1 0.0 0.5 1.0 1.5 2.0 10-8 10-7 10-6 10-5 10-4 10-3 10-2 10-1 mN [GeV] CSRR 21 =4· CTRR 21 =CSRR 12 =4· CTRR 12 SHIP:2×1020 POT FASER: 150 fb-1 ATLAS: 3 ab-1 FASER2: 3 ab-1 AL3X: 250 fb-1 MAPP1: 30 fb-1 ANUBIS: 3 ab-1 MAPP2: 300 fb-1 CODEX -b: 300 fb-1 MATHUSLA: 3 ab-1 Figure 8. Results for flavor benchmark 2. The format is the same as in figure 7. leads to a further reduction in sensitivity. We stress again that our results in this regime are conservative as we have not considered sterile neutrino production via kaon decays. 7.4 Flavor benchmark 3 We proceed to study a scenario where sterile neutrinos are mainly produced through decays of B-mesons. Compared to flavor benchmark 1, we keep the same flavor structure for the decay Wilson coefficient, but turn on C13 P . This leads to the sterile neutrino production via the decay processes B± →e± + N, B± →π0 + e± + N, B± →ρ0 + e± + N, (7.7) B0 →π± + e∓+ N, B0 →ρ± + e∓+ N, Bs →K(∗)± + e∓+ N. (7.8) B± →e± + N, B± →π0 + e± + N, B± →ρ0 + e± + N, (7.7) B0 →π± + e∓+ N, B0 →ρ± + e∓+ N, Bs →K(∗)± + e∓+ N. (7.8) (7.7) (7.8) The relevant information is summarized in table 5. The relevant information is summarized in table 5. Our results for the sensitivity reach for this benchmark are shown in figure 9. The two top panels show results for the leptoquark (left) and CVLR (right) scenarios in the CP-CD – 28 – Flavor benchmark 3.2 Flavor benchmark 3.3 production operator: CP C13 SRR = 4C13 TRR C13 VLR decay operator: CD C11 SRR = 4C11 TRR C11 VLR production process via CP B±/B0/Bs →N + e±(+X) decay process via CD N →π± + e∓, ρ± + e∓ Table 5. Summary of flavor benchmark 3. 7.4 Flavor benchmark 3 mN = 2.6 GeV 10-7 10-6 10-5 10-4 10-3 10-2 10-1 10-7 10-6 10-5 10-4 10-3 10-2 10-1 CSRR 13 =4· CTRR 13 CSRR 11 =4· CTRR 11 SHIP:2×1020 POT ATLAS: 3 ab-1 AL3X: 250 fb-1 ANUBIS: 3 ab-1 CODEX -b: 300 fb-1 FASER: 150 fb-1 FASER2: 3 ab-1 MAPP1: 30 fb-1 MAPP2: 300 fb-1 MATHUSLA: 3 ab-1 mN = 2.6 GeV 10-7 10-6 10-5 10-4 10-3 10-2 10-1 10-7 10-6 10-5 10-4 10-3 10-2 10-1 CVLR 13 CVLR 11 SHIP:2×1020 POT ATLAS: 3 ab-1 AL3X: 250 fb-1 ANUBIS: 3 ab-1 CODEX -b: 300 fb-1 FASER: 150 fb-1 FASER2: 3 ab-1 MAPP1: 30 fb-1 MAPP2: 300 fb-1 MATHUSLA: 3 ab-1 0.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 10-8 10-7 10-6 10-5 10-4 10-3 10-2 10-1 mN [GeV] CSRR 13 =4· CTRR 13 =CSRR 11 =4· CTRR 11 SHIP:2×1020 POT FASER: 150 fb-1 ATLAS: 3 ab-1 FASER2: 3 ab-1 AL3X: 250 fb-1 MAPP1: 30 fb-1 ANUBIS: 3 ab-1 MAPP2: 300 fb-1 CODEX -b: 300 fb-1 MATHUSLA: 3 ab-1 0.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 10-8 10-7 10-6 10-5 10-4 10-3 10-2 10-1 mN [GeV] CVLR 13 =CVLR 11 SHIP:2×1020 POT FASER: 150 fb-1 ATLAS: 3 ab-1 FASER2: 3 ab-1 AL3X: 250 fb-1 MAPP1: 30 fb-1 ANUBIS: 3 ab-1 MAPP2: 300 fb-1 CODEX -b: 300 fb-1 MATHUSLA: 3 ab-1 Figure 9. Results for flavor benchmark 3. The scenarios and the labeling are as in figure 7. Flavor benchmark 3.2 Flavor benchmark 3.3 production operator: CP C13 SRR = 4C13 TRR C13 VLR decay operator: CD C11 SRR = 4C11 TRR C11 VLR production process via CP B±/B0/Bs →N + e±(+X) decay process via CD N →π± + e∓, ρ± + e∓ Table 5. Summary of flavor benchmark 3. Flavor benchmark 3.2 Flavor benchmark 3.3 production operator: CP C13 SRR = 4C13 TRR C13 VLR decay operator: CD C11 SRR = 4C11 TRR C11 VLR production process via CP B±/B0/Bs →N + e±(+X) decay process via CD N →π± + e∓, ρ± + e∓ Table 5. Summary of flavor benchmark 3. Table 5. Summary of flavor benchmark 3. Table 5. Summary of flavor benchmark 3. 7.4 Flavor benchmark 3 mN = 2.6 GeV 10-7 10-6 10-5 10-4 10-3 10-2 10-1 10-7 10-6 10-5 10-4 10-3 10-2 10-1 CVLR 13 CVLR 11 SHIP:2×1020 POT ATLAS: 3 ab-1 AL3X: 250 fb-1 ANUBIS: 3 ab-1 CODEX -b: 300 fb-1 FASER: 150 fb-1 FASER2: 3 ab-1 MAPP1: 30 fb-1 MAPP2: 300 fb-1 MATHUSLA: 3 ab-1 mN = 2.6 GeV 10-7 10-6 10-5 10-4 10-3 10-2 10-1 10-7 10-6 10-5 10-4 10-3 10-2 10-1 CSRR 13 =4· CTRR 13 CSRR 11 =4· CTRR 11 SHIP:2×1020 POT ATLAS: 3 ab-1 AL3X: 250 fb-1 ANUBIS: 3 ab-1 CODEX -b: 300 fb-1 FASER: 150 fb-1 FASER2: 3 ab-1 MAPP1: 30 fb-1 MAPP2: 300 fb-1 MATHUSLA: 3 ab-1 JHEP03(2021)148 0.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 10-8 10-7 10-6 10-5 10-4 10-3 10-2 10-1 mN [GeV] CVLR 13 =CVLR 11 SHIP:2×1020 POT FASER: 150 fb-1 ATLAS: 3 ab-1 FASER2: 3 ab-1 AL3X: 250 fb-1 MAPP1: 30 fb-1 ANUBIS: 3 ab-1 MAPP2: 300 fb-1 CODEX -b: 300 fb-1 MATHUSLA: 3 ab-1 0.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 10-8 10-7 10-6 10-5 10-4 10-3 10-2 10-1 mN [GeV] CSRR 13 =4· CTRR 13 =CSRR 11 =4· CTRR 11 SHIP:2×1020 POT FASER: 150 fb-1 ATLAS: 3 ab-1 FASER2: 3 ab-1 AL3X: 250 fb-1 MAPP1: 30 fb-1 ANUBIS: 3 ab-1 MAPP2: 300 fb-1 CODEX -b: 300 fb-1 MATHUSLA: 3 ab-1 Figure 9. Results for flavor benchmark 3. The scenarios and the labeling are as in figure 7. plane for fixed mN = 2.6 GeV. The resulting curves are rather different from the scenarios, where sterile neutrinos are produced via D-meson decays. In the earlier flavor benchmarks, CP can be turned offand sufficient sterile neutrinos will be produced via minimal mixing to still detect sterile neutrinos, as long as CD is sufficiently large to ensure sterile neutrinos decay in the respective detector volumes. This feature has disappeared in this benchmark scenario and for CP < 10−7 no detection is possible in any of the experiments, even for large CD. This lack of sensitivity is explained by the fact that the production rates of B-mesons are smaller than that of D-meson by roughly a factor ∼20 at 14 TeV pp collisions and by a factor ∼3000 at SHiP. The two lower panels in figure 9 assume CP = CD and show sensitivity curves as a function of the sterile neutrino mass. 7.4 Flavor benchmark 3 Flavor benchmark 4.2 Flavor benchmark 4.3 production operator: CP C13 SRR = 4C13 TRR C13 VLR decay operator: CD C12 SRR = 4C12 TRR C12 VLR production process via CP B±/B0/Bs →N + e±(+X) decay process via CD N →K(∗)± + e∓ Table 6. Summary of flavor benchmark 4. Table 6. Summary of flavor benchmark 4. Table 6. Summary of flavor benchmark 4. mN = 2.8 GeV 10-7 10-6 10-5 10-4 10-3 10-2 10-1 10-7 10-6 10-5 10-4 10-3 10-2 10-1 CVLR 13 CVLR 12 SHIP:2×1020 POT ATLAS: 3 ab-1 AL3X: 250 fb-1 ANUBIS: 3 ab-1 CODEX -b: 300 fb-1 FASER: 150 fb-1 FASER2: 3 ab-1 MAPP1: 30 fb-1 MAPP2: 300 fb-1 MATHUSLA: 3 ab-1 mN = 2.8 GeV 10-7 10-6 10-5 10-4 10-3 10-2 10-1 10-7 10-6 10-5 10-4 10-3 10-2 10-1 CSRR 13 =4· CTRR 13 CSRR 12 =4· CTRR 12 SHIP:2×1020 POT ATLAS: 3 ab-1 AL3X: 250 fb-1 ANUBIS: 3 ab-1 CODEX -b: 300 fb-1 FASER: 150 fb-1 FASER2: 3 ab-1 MAPP1: 30 fb-1 MAPP2: 300 fb-1 MATHUSLA: 3 ab-1 JHEP03(2021)148 0.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 10-8 10-7 10-6 10-5 10-4 10-3 10-2 10-1 mN [GeV] CVLR 13 =CVLR 12 SHIP:2×1020 POT FASER: 150 fb-1 ATLAS: 3 ab-1 FASER2: 3 ab-1 AL3X: 250 fb-1 MAPP1: 30 fb-1 ANUBIS: 3 ab-1 MAPP2: 300 fb-1 CODEX -b: 300 fb-1 MATHUSLA: 3 ab-1 0.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 10-8 10-7 10-6 10-5 10-4 10-3 10-2 10-1 mN [GeV] CSRR 13 =4· CTRR 13 =CSRR 12 =4· CTRR 12 SHIP:2×1020 POT FASER: 150 fb-1 ATLAS: 3 ab-1 FASER2: 3 ab-1 AL3X: 250 fb-1 MAPP1: 30 fb-1 ANUBIS: 3 ab-1 MAPP2: 300 fb-1 CODEX -b: 300 fb-1 MATHUSLA: 3 ab-1 Figure 10. Results for flavor benchmark 4. The plot format is the same as in figure 7. given their larger masses, the B-mesons, are less boosted in the very forward direction, leading to weakened acceptance of the SHiP detector for the long-lived sterile neutrinos. The hierarchies in sensitivity of the other experiments are the same as in the minimal scenario and the other flavor benchmarks. However, the overall reach is increased over the previous flavor benchmarks with the MATHUSLA sensitivity to couplings at the impressive 5 · 10−6 level, corresponding to scales of O(100) TeV. 7.4 Flavor benchmark 3 In the previous flavor benchmarks SHiP showed the strongest sensitivity, but here it performs worse than MATHUSLA, ANUBIS, and AL3X. The reason is twofold. First, the ratio between the number of B-mesons produced and that of D-mesons is much smaller at SHiP than at the 14 TeV pp−collision experiments. Second, – 29 – Flavor benchmark 4.2 Flavor benchmark 4.3 production operator: CP C13 SRR = 4C13 TRR C13 VLR decay operator: CD C12 SRR = 4C12 TRR C12 VLR production process via CP B±/B0/Bs →N + e±(+X) decay process via CD N →K(∗)± + e∓ Table 6. Summary of flavor benchmark 4. mN = 2.8 GeV 10-7 10-6 10-5 10-4 10-3 10-2 10-1 10-7 10-6 10-5 10-4 10-3 10-2 10-1 CSRR 13 =4· CTRR 13 CSRR 12 =4· CTRR 12 SHIP:2×1020 POT ATLAS: 3 ab-1 AL3X: 250 fb-1 ANUBIS: 3 ab-1 CODEX -b: 300 fb-1 FASER: 150 fb-1 FASER2: 3 ab-1 MAPP1: 30 fb-1 MAPP2: 300 fb-1 MATHUSLA: 3 ab-1 mN = 2.8 GeV 10-7 10-6 10-5 10-4 10-3 10-2 10-1 10-7 10-6 10-5 10-4 10-3 10-2 10-1 CVLR 13 CVLR 12 SHIP:2×1020 POT ATLAS: 3 ab-1 AL3X: 250 fb-1 ANUBIS: 3 ab-1 CODEX -b: 300 fb-1 FASER: 150 fb-1 FASER2: 3 ab-1 MAPP1: 30 fb-1 MAPP2: 300 fb-1 MATHUSLA: 3 ab-1 0.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 10-8 10-7 10-6 10-5 10-4 10-3 10-2 10-1 mN [GeV] CSRR 13 =4· CTRR 13 =CSRR 12 =4· CTRR 12 SHIP:2×1020 POT FASER: 150 fb-1 ATLAS: 3 ab-1 FASER2: 3 ab-1 AL3X: 250 fb-1 MAPP1: 30 fb-1 ANUBIS: 3 ab-1 MAPP2: 300 fb-1 CODEX -b: 300 fb-1 MATHUSLA: 3 ab-1 0.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 10-8 10-7 10-6 10-5 10-4 10-3 10-2 10-1 mN [GeV] CVLR 13 =CVLR 12 SHIP:2×1020 POT FASER: 150 fb-1 ATLAS: 3 ab-1 FASER2: 3 ab-1 AL3X: 250 fb-1 MAPP1: 30 fb-1 ANUBIS: 3 ab-1 MAPP2: 300 fb-1 CODEX -b: 300 fb-1 MATHUSLA: 3 ab-1 Figure 10. Results for flavor benchmark 4. The plot format is the same as in figure 7. Flavor benchmark 4.2 Flavor benchmark 4.3 production operator: CP C13 SRR = 4C13 TRR C13 VLR decay operator: CD C12 SRR = 4C12 TRR C12 VLR production process via CP B±/B0/Bs →N + e±(+X) decay process via CD N →K(∗)± + e∓ Table 6. Summary of flavor benchmark 4. 7.5 Flavor benchmark 4 Flavor benchmark 5.2 Flavor benchmark 5.3 production operator: CP C13 SRR = 4C13 TRR C13 VLR decay operator: CD C21 SRR = 4C21 TRR C21 VLR production process via CP B±/B0/Bs →N + e±(+X) production process via CD D±/D0/Ds →N + e±(+X) decay process via CD N →D(∗)± + e∓ Table 7. Summary of flavor benchmark 5. Flavor benchmark 5.2 Flavor benchmark 5.3 production operator: CP C13 SRR = 4C13 TRR C13 VLR decay operator: CD C21 SRR = 4C21 TRR C21 VLR production process via CP B±/B0/Bs →N + e±(+X) production process via CD D±/D0/Ds →N + e±(+X) decay process via CD N →D(∗)± + e∓ Table 7. Summary of flavor benchmark 5. Table 7. Summary of flavor benchmark 5. Table 7. Summary of flavor benchmark 5. Table 7. Summary of flavor benchmark 5. JHEP03(2021)148 mN = 3.5 GeV 10-7 10-6 10-5 10-4 10-3 10-2 10-1 10-7 10-6 10-5 10-4 10-3 10-2 10-1 CVLR 13 CVLR 21 SHIP:2×1020 POT ATLAS: 3 ab-1 AL3X: 250 fb-1 ANUBIS: 3 ab-1 CODEX -b: 300 fb-1 FASER: 150 fb-1 FASER2: 3 ab-1 MAPP1: 30 fb-1 MAPP2: 300 fb-1 MATHUSLA: 3 ab-1 mN = 3.5 GeV 10-7 10-6 10-5 10-4 10-3 10-2 10-1 10-7 10-6 10-5 10-4 10-3 10-2 10-1 CSRR 13 =4· CTRR 13 CSRR 21 =4· CTRR 21 SHIP:2×1020 POT ATLAS: 3 ab-1 AL3X: 250 fb-1 ANUBIS: 3 ab-1 CODEX -b: 300 fb-1 FASER: 150 fb-1 FASER2: 3 ab-1 MAPP1: 30 fb-1 MAPP2: 300 fb-1 MATHUSLA: 3 ab-1 0.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 10-8 10-7 10-6 10-5 10-4 10-3 10-2 10-1 mN [GeV] CVLR 13 =CVLR 21 SHIP:2×1020 POT FASER: 150 fb-1 ATLAS: 3 ab-1 FASER2: 3 ab-1 AL3X: 250 fb-1 MAPP1: 30 fb-1 ANUBIS: 3 ab-1 MAPP2: 300 fb-1 CODEX -b: 300 fb-1 MATHUSLA: 3 ab-1 0.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 10-8 10-7 10-6 10-5 10-4 10-3 10-2 10-1 mN [GeV] CSRR 13 =4· CTRR 13 =CSRR 21 =4· CTRR 21 SHIP:2×1020 POT FASER: 150 fb-1 ATLAS: 3 ab-1 FASER2: 3 ab-1 AL3X: 250 fb-1 MAPP1: 30 fb-1 ANUBIS: 3 ab-1 MAPP2: 300 fb-1 CODEX -b: 300 fb-1 MATHUSLA: 3 ab-1 Figure 11. Results for flavor benchmark 5. The format is the same as in figure 7. the reach of CP because of the choice for a slightly larger mass of the sterile neutrino. 7.5 Flavor benchmark 4 The two lower plots show sensitivity curves in the plane CP = CD vs. mN. Compared to the lower panels of figure 9, they show similar exclusion limits for mN ≳mK. However, for lighter sterile neutrinos, since only the decay modes via the weak current and active-sterile neutrino mixing are open, the sensitivity is significantly reduced. The hierarchies of the various experiments is the same as in the previous benchmark for both EFT scenarios. 7.5 Flavor benchmark 4 For flavor benchmark 4 the production primarily proceeds via B-meson decay, as for the previous benchmark, but here sterile neutrinos decay to a kaon through C12 D . The relevant information is summarized in table 6. Figure 10 shows the numerical results for this benchmark. In the two top panels we show plots in the CP-CD plane for fixed mN = 2.8 GeV. In general these plots show very similar features as their counterparts in figure 9, except for an overall small reduction in – 30 – Flavor benchmark 5.2 Flavor benchmark 5.3 production operator: CP C13 SRR = 4C13 TRR C13 VLR decay operator: CD C21 SRR = 4C21 TRR C21 VLR production process via CP B±/B0/Bs →N + e±(+X) production process via CD D±/D0/Ds →N + e±(+X) decay process via CD N →D(∗)± + e∓ Table 7. Summary of flavor benchmark 5. mN = 3.5 GeV 10-7 10-6 10-5 10-4 10-3 10-2 10-1 10-7 10-6 10-5 10-4 10-3 10-2 10-1 CSRR 13 =4· CTRR 13 CSRR 21 =4· CTRR 21 SHIP:2×1020 POT ATLAS: 3 ab-1 AL3X: 250 fb-1 ANUBIS: 3 ab-1 CODEX -b: 300 fb-1 FASER: 150 fb-1 FASER2: 3 ab-1 MAPP1: 30 fb-1 MAPP2: 300 fb-1 MATHUSLA: 3 ab-1 mN = 3.5 GeV 10-7 10-6 10-5 10-4 10-3 10-2 10-1 10-7 10-6 10-5 10-4 10-3 10-2 10-1 CVLR 13 CVLR 21 SHIP:2×1020 POT ATLAS: 3 ab-1 AL3X: 250 fb-1 ANUBIS: 3 ab-1 CODEX -b: 300 fb-1 FASER: 150 fb-1 FASER2: 3 ab-1 MAPP1: 30 fb-1 MAPP2: 300 fb-1 MATHUSLA: 3 ab-1 0.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 10-8 10-7 10-6 10-5 10-4 10-3 10-2 10-1 mN [GeV] CSRR 13 =4· CTRR 13 =CSRR 21 =4· CTRR 21 SHIP:2×1020 POT FASER: 150 fb-1 ATLAS: 3 ab-1 FASER2: 3 ab-1 AL3X: 250 fb-1 MAPP1: 30 fb-1 ANUBIS: 3 ab-1 MAPP2: 300 fb-1 CODEX -b: 300 fb-1 MATHUSLA: 3 ab-1 0.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 10-8 10-7 10-6 10-5 10-4 10-3 10-2 10-1 mN [GeV] CVLR 13 =CVLR 21 SHIP:2×1020 POT FASER: 150 fb-1 ATLAS: 3 ab-1 FASER2: 3 ab-1 AL3X: 250 fb-1 MAPP1: 30 fb-1 ANUBIS: 3 ab-1 MAPP2: 300 fb-1 CODEX -b: 300 fb-1 MATHUSLA: 3 ab-1 Figure 11. Results for flavor benchmark 5. The format is the same as in figure 7. 8 Discussion and comparison with other probes JHEP03(2021)148 Our results indicate that proposed experiments to detect long-lived particles are very sen- sitive to higher-dimensional operators in the νSMEFT Lagrangian. In the mass range mK < mN < mB the sensitivity curves are rather stable with respect to different EFT operators in eq. (2.18) and the particular flavor configuration, as long as the sterile neu- trino can be produced via the decay of D- or B-mesons, and the sterile neutrino can, in turn, decay semi-leptonically. While each particular choice of EFT operators and flavor assignment requires a detailed study, we find that FASER is sensitive to Wilson coefficient couplings of about ∼10−3 (this is extended to ∼10−4 for FASER2), while experiments such as MATHUSLA, ANUBIS, AL3X, and SHiP can reach down to coupling strengths of ∼5 · 10−6. From the matching relations in eq. (2.11), we see that such limits can be used to constrain the νSMEFT operators C(6) Hνe, C(6) duνe, C(6) LνQd, C(6) LdQν, and C(6) QuνL. Assuming a scaling of these Wilson coefficients as ∼v2/Λ2, the sensitivities range from Λ ∼8 TeV for FASER up to Λ ∼100 TeV for the larger experiments. The νSMEFT operators we consider here can also be probed in other experiments. These include meson and tau decays, elastic coherent neutrino-nucleon scattering (ECνNS), missing transverse energy searches, etc. Depending on the probe, the relevant sterile neu- trino mass range and the flavor assignment can differ from the cases considered in this work. For instance, limits from pion decay or from neutron or nuclear beta decay require sterile neutrino masses below the pion mass or the respective Q value of β decay, consid- erably lower than the GeV-scale sterile neutrinos considered in this work. Here we briefly give an overview of the literature. Refs. [104, 105] investigated limits from pion decays, tau decays, and singular leptons with missing transverse energy. The most restrictive bounds on the new physics scale are obtained from pion decays with Λ ≳36 TeV. However, tau decays allow for a neutrino mass range mN more comparable to our studies, while searches for l + E T are largely independent of sterile neutrino masses. The latter investigations set the new physics scale to Λ ≳2 −5 TeV. We did not explicitly consider processes involving τ leptons, but there should be good sensitivity in the appropriate mass range mτ +mπ < mN < mB −mτ. 7.6 Flavor benchmark 5 In flavor benchmark 5, we turn on the operators C13 P and C21 D . In this case, the decay operator also leads to production of sterile neutrinos, but the resulting sterile neutrinos are restricted to a mass range where they can only decay via minimal mixing. We summarize the benchmark features in table 7. Figure 11 shows the resulting sensitivity reach. In – 31 – the upper row we fix the sterile neutrino mass at 3.5 GeV. In general the absolute and relative sensitivities to CP and CD are comparable to the previous flavor benchmark, but the sensitivity in the bottom panel drops a bit for mN < mD. In this case sterile neutrinos only decay via minimal mixing. The exception is SHiP for which the sensitivity grows for mN < mD, where SHiP becomes the most sensitive experiment in fact, because the production cross section difference between D- and B-mesons is much larger at SHiP than at the other experiments. 8 Discussion and comparison with other probes More quantitative statements require a detailed study that includes sterile neutrino production via τ decays and an efficiency factor for reconstructing decays of τ mesons in the final states. Refs. [106, 107] consider a larger set of pseudoscalar meson decays corresponding to several flavor configurations. Additionally, the effects of νSMEFT operators on lepton fla- vor universality (LFU), CKM unitarity, and β-decays are examined. The most stringent – 32 – bounds are on the operators C(6) LνQd, C(6) LdQν, and C(6) QuνL involving an up quark, a down (strange) quark and an electron using LFU constraints. The new physics scale is limited by Λ ≳74 (110) TeV in the limit of massless sterile neutrinos and thus cannot be directly compared to results obtained here. Bounds on other operators and different flavor com- binations are in the range of Λ ≳0.5 −8 TeV. Similar sensitivities are found examining anomalies in the transition b →cτν including light sterile neutrinos (mN ≲100 MeV) [108]. Further, limits from ECνNS based on the COHERENT experiment [109] are considered in refs. [106, 110, 111]. Sterile neutrinos considered in these works are again much lighter than the GeV-scale (mN ≲0.5 MeV) and the resulting bounds are at the level of Λ ≳1 TeV. We conclude that the sensitivities of the experiments considered here are competitive with and complementary to existing constraints. Constraints on dimension-five couplings are discussed e.g. in refs. [56, 112]. JHEP03(2021)148 In this work we have focused on Majorana neutrinos (although our sensitivity curves are not affected dramatically if we had considered Dirac neutrinos instead) for which strong constraints can be set from 0νββ experiments. In ref. [51] some of us developed a framework to calculate 0νββ decay rates in the presence of light sterile neutrinos and the νSMEFT Lagrangian. In particular, we investigated the reach of current and future experiments to probe scenario 2: the 3 + 1 leptoquark model. As sterile neutrinos appear as virtual states, 0νββ experiments are sensitive to a broad range of neutrino masses with a peak sensitivity at mN ≃100 MeV, which drops offfor larger or smaller masses. To make a comparison, we consider the case yLR 11 yRL∗ 11 = yLR 21 yRL∗ 11 = 1 and yLR 11 yRL∗ 11 = yLR 11 yRL∗ 31 = 1 and vanishing couplings for other flavors. 8 Discussion and comparison with other probes We can then compare flavor benchmarks 1 and 3 to the sensitivity of 0νββ experiments, which only depend on sterile neutrino couplings to first-generation quarks and leptons. For these choices of couplings, we can calculate 0νββ decay rates and determine the LHC and SHiP sensitivity curves as a function of mN and mLQ (0νββ rates have a very small dependence on phases appearing in the 3 + 1 neutrino mixing matrix and we neglect this dependence here for simplicity). The results are shown in figure 12. We stress that the uncertainties associated with hadronic and nuclear matrix elements for 0νββ decay rates are sizable and not included in the plot, for details we refer to refs. [51, 113]. For flavor benchmark 1 (left panel of figure 12), the limits from 0νββ are somewhat stronger than the prospected sensitivity of FASER2 and MATHUSLA, chosen as representative experiments, in the relevant mass range. For flavor benchmark 3 the prospected MATHUSLA overtakes current 0νββ limits for masses between 1 and 5 GeV. We stress that the bounds from 0νββ decay experiments are only valid for Majorana neutrinos and final-state electrons. However, the sensitivity curves for the various LHC experiments discussed here are (roughly) valid for (pseudo-)Dirac neutrinos, and in the appropriate mass range also for couplings to muons and, to lesser extent, taus instead of electrons, and in general to a broader range of quark flavors. They are thus more general than 0νββ limits albeit in a much small sterile neutrino mass range. – 33 – 0.5 1.0 1.5 2.0 10 20 30 40 50 60 mN [GeV] mLQ [TeV] 1 2 3 4 5 20 40 60 80 100 mN [GeV] mLQ [TeV] Figure 12. Comparison between constraints from neutrinoless double beta decay of 136Xe (blue) [114] and projected sensitivity of FASER2 (red) and MATHUSLA (yellow) for the leptoquark scenario. In the left (right) panel we turned on LQ couplings corresponding to flavor benchmark 1 (3). See text for more details. 1 2 3 4 5 20 40 60 80 100 mN [GeV] mLQ [TeV] 0.5 1.0 1.5 2.0 10 20 30 40 50 60 mN [GeV] mLQ [TeV] mLQ [TeV] JHEP03(2021)148 Figure 12. Comparison between constraints from neutrinoless double beta decay of 136Xe (blue) [114] and projected sensitivity of FASER2 (red) and MATHUSLA (yellow) for the leptoquark scenario. 8 Discussion and comparison with other probes In the left (right) panel we turned on LQ couplings corresponding to flavor benchmark 1 (3). See text for more details. 9 Conclusions The possibility of sterile neutrinos provides one of the main motivations for the search for long-lived particles (LLPs). Sterile neutrinos provide compelling solutions to major problems in particle physics and cosmology, such as active neutrino masses and the baryon asymmetry of the Universe. Sterile neutrinos are in fact predicted in a variety of theoretical models, ranging from the minimal scenario where they interact with Standard Model (SM) particles through minimal mixing with active neutrinos, to more exotic scenarios involving new fields with masses well above the electroweak scale such as left-right symmetric models or grand unified theories. In this work, we focused on relatively light sterile neutrinos with masses at the GeV scale, down to about 100 MeV. This mass range is interesting, as it is linked to low-scale leptogenesis and opens up the possibility of efficiently producing sterile neutrinos through the decays of pseudoscalar mesons, which are copiously produced in collider experiments. In particular at CERN, besides the ATLAS and CMS LHC collaborations, various proposed experiments are presently under discussion specifically targeting the detection of LLPs, such as the fixed-target experiment SHiP and a number of so-called far detectors at various pp-collision interaction points e.g. FASER and MATHUSLA. A large number of mesons are expected to be produced at the interaction points of these experiments, which in turn can decay to sterile neutrinos. We focused on sterile neutrinos which can be produced from bottom and charm meson decays in hadronic collisions, and investigated the sensitivity reach of present and future LHC experiments, and SHiP to detect sterile neutrinos. To avoid theoretical bias we approached this problem in the framework of the neutrino- extended SM effective field theory (νSMEFT). This framework allows for a light gauge- singlet fermion, a sterile neutrino or heavy neutral lepton, and assumes other BSM fields to have masses M ≫v, the SM Higgs vacuum expectation value. This framework de- scribes effective local interactions between sterile neutrinos and SM fields in a systematic expansion. We considered dimension-6 operators that allow for sterile neutrino produc- – 34 – tion via mesonic decays at tree level. Our framework is general, but for concreteness we considered specific scenarios where a subset, or only a single, EFT operator is turned on at the same time. These scenarios are motivated by UV completions like leptoquark or left-right-symmetric models. 9 Conclusions Other EFT scenarios or specific UV-complete models can be straightforwardly investigated by using the extensive formulae given in the appendix. To benchmark our calculations with the literature, we also considered the minimal scenarios where higher-dimensional operators are turned off. We performed Monte-Carlo simulations to evaluate the sensitivity reach of the con- sidered experiments: ATLAS, CODEX-b, FASER, MATHUSLA, AL3X, ANUBIS, MoEDAL-MAPP, and SHiP. For the minimal scenario, the obtained sensitivity curves are in agreement with ex- isting results with minimal discrepancies, while we obtained sensitivity curves for the two MoEDAL-MAPP experiments for the first time. For the EFT scenarios we consider active- sterile neutrino mixing, the EFT operators, and their interference terms simultaneously. For each EFT scenario, we considered a series of different flavor benchmarks, where the EFT operators induce either D- or B-meson decays into sterile neutrinos, and the sterile neutrinos decay to an electron and various mesons, N →e+Mij, cf. tables 3–7. For the D- meson benchmarks, we found that SHiP and MATHUSLA have the most extensive sensitivity reach. They are sensitive to dimensionless Wilson coefficients at the 10−5 level, for most of the kinematically allowed sterile neutrino mass range. For such values of couplings, the production and decay of sterile neutrinos is dominated by the higher-dimensional opera- tors with minimal sterile-active mixing playing a subleading role. Apart from dimensionless couplings and potential loop suppressions, the dimensionless Wilson coefficients scale as v2/Λ2, where Λ is the high-energy scale where the νSMEFT operators are generated. The sensitivity drops at the edges of the allowed mass range, but does not disappear completely, even for sterile neutrinos with masses above mD, because of the contributions from SM weak interactions and active-sterile mixing. Assuming a v2/Λ2 scaling, SHiP and MATHUSLA could probe scales around 80 TeV. This scale is lowered to 8 TeV for FASER and 25 TeV for FASER2, which are much smaller experiments. JHEP03(2021)148 For our B-meson benchmarks, because of its much smaller B-meson production rates and a weaker acceptance, SHiP does not show the best performance. Instead, we found that MATHUSLA and ANUBIS would be sensitive to Wilson coefficients at the 5 · 10−6 level. The sensitivity curves appear to be fairly independent of the Lorentz structure and the exact flavor configuration of the EFT operators, as long as sterile neutrinos can be produced through D- or B-meson decays and sterile neutrinos can decay semi-leptonically. Acknowledgments We thank Philip Bechtle, Haolin Li, and Vasiliki Mitsou for discussions. JdV is supported by the RHIC Physics Fellow Program of the RIKEN BNL Research Center. Z. S. W. is supported partly by the Ministry of Science and Technology (MoST) of Taiwan with grant number MoST-109-2811-M-007-509, and partly by the Ministry of Science, ICT & Future Planning of Korea, the Pohang City Government, and the Gyeongsangbuk-do Provincial Government through the Young Scientist Training Asia Pacific Economic Cooperation pro- gram of the Asia Pacific Center for Theoretical Physics. The work of H. K. D. is supported through BMBF grant 05H18PDCA1. 9 Conclusions For our ATLAS study we applied an overall flat efficiency factor of 10−3. Of all the experiments we have studied here only ATLAS is operational. Thus we strongly encourage our colleagues at ATLAS and CMS collaborations to perform a proper full analysis of the scenarios we have presented and investigated here. This should put our approximations on a much firmer footing. We compared our projected sensitivities with (projected) constraints obtained from other probes of sterile neutrinos with effective interactions such as light pseudoscalar me- son decays, tau decays, coherent neutrino-nucleus scattering, LHC searches for missing transverse energy, and neutrinoless double beta decay. Our results are very competitive – 35 – and complementary. We conclude that searches for displaced vertices of long-lived sterile neutrinos at the LHC and SHiP are an excellent probe of νSMEFT operators and of sterile neutrinos in general. A straightforward extension of our work is to final state muons instead of electrons. Here we expect basically the same results, except at the very lowest end of the sterile neutrino mass we have considered. A more involved extension would be to also consider the production of sterile neutrinos from the decay of the light K and π mesons. Furthermore in a future project, we shall consider the case of final state τ’s. This will restrict the kinematically viable regions, but would also require a proper investigation of the detection efficiencies. Finally, in this work we have neglected direct sterile neutrino production through parton collisions which are subleading with respect to rare mesonic decays for sterile neutrinos masses below, roughly, 5 GeV. It would be interesting to include partonic processes to investigate the sensitivity of various experiments to heavier sterile neutrinos. JHEP03(2021)148 A.1 Charged currents Sterile neutrinos can decay into a charged meson and a charged lepton by the weak in- teraction or EFT operators. Pseudoscalar mesons can decay into a two-body final state for pseudoscalar and axial-vector currents, while vector mesons can decay into a two-body final state via vector or tensor currents. For pseudoscalar mesons containing an anti-quark ¯qi and a quark qj, we define meson decay constants via ⟨0|¯qiγµγ5qj|M(q)⟩≡iqµfM , (A.1) (A.1) where |M(q)⟩is a pseudoscalar meson with momentum q. Current-algebra or leading-order chiral perturbation theory gives ⟨0|¯qiγ5qj|M(q)⟩= i m2 M mqi + mqj fM ≡ifS M (A.2) (A.2) for the pseudoscalar current. The vector and tensor currents only induce two-body final states for vector mesons. We define ⟨0|¯qiγµqj|M∗(q, ϵ)⟩≡ifV MmM∗ϵµ , ⟨0|¯qiσµνqj|M∗(q, ϵ)⟩≡−fT M(qµϵν −qνϵµ) , (A.3) (A.3) – 36 – where |M∗(q, ϵ)⟩denotes a vector meson M∗with mass mM∗, momentum q and polarization ϵµ. Heavy-quark symmetry relates fT M ≃fV M. All decay constants are given below in appendix C. Armed with these decay constants, we calculate the production and decay rates of neutrino mass eigenstates starting from eq. (2.18). We begin with neutrino production via the decay of pseudoscalar mesons M− ij →l− k + νl, and the corresponding decay νl → M+ ij + l− k where ij denotes the generation of quark flavors that make up the meson (we drop these indices below for notational convenience), k the charged lepton generation, and l = {1, . . . , ¯n} the neutrino mass eigenstate. For the decay of the neutrino mass eigenstate we also include the decay to the charge-conjugate final state which is equally likely due to the Majorana nature of νl. A.1 Charged currents JHEP03(2021)148 We obtain for the summed-over-spins squared amplitudes for sterile neutrino (N) pro- duction X spins |M(M−→N + l− k )|2 = G2 F 2  f2 M  C(6) VLL 2 + C(6) VLR −C(6) VRR 2 fV V,1 +f2 MRe h C(6) VLL(C(6) VLR −C(6) VRR)∗i fV V,2 +(fS M)2 C(6) SLR −C(6) SRR 2 fSS +fMfS MijRe h C(6) VLL(C(6) SLR −C(6) SRR)∗i fV S,1 (A.4) +fMfS MijRe h (C(6) VLR −C(6) VRR)(C(6) SLR −C(6) SRR)∗i fV S,2  , X spins |M(M−→N + l− k )|2 = G2 F 2  f2 M  C(6) VLL 2 + C(6) VLR −C(6) VRR 2 fV V,1 spins where all Wilson coefficients carry flavor indices ijkl and we define the functions where all Wilson coefficients carry flavor indices ijkl and we define the functions fV V,1 ≡m2 M(m2 k + m2 N) −(m2 k −m2 N)2 , fV V,2 ≡−4m2 MmkmN , fSS ≡m2 M −m2 k −m2 N , fV S,1 ≡−2mN(m2 M + m2 k −m2 N) , fV S,2 ≡2mk(m2 M −m2 k + m2 N). (A.5) fV S,1 ≡−2mN(m2 M + m2 k −m2 N) , fV S,2 ≡2mk(m2 M −m2 k + m2 N). (A.5) (A.5) For sterile neutrino decay, we include the charge-conjugated final states leading to an additional factor 2 compensating the additional 1/2 from initial-spin averaging. We then obtain 2 × 1 2 X spins |M(N →M + lk)|2 = X spins |M(M →N + lk)|2 fab,i→gab,i , (A.6) (A.6) where ab = {V V, SS, V S}, i = {1, 2}, and gab,i = −fab,i. where ab = {V V, SS, V S}, i = {1, 2}, and gab,i = −fab,i. – 37 – Similarly, for processes involving vector mesons we find Similarly, for processes involving vector mesons we find 1 3 X spins |M(M∗−→N + l− k )|2 = G2 F 6  (fV M∗)2  C(6) VLL 2 + C(6) VLR + C(6) VRR 2 f∗ V V,1 +(fV M∗)2Re h C(6) VLL(C(6) VLR + C(6) VRR)∗i f∗ V V,2 +(fT M∗)2 C(6) TRR 2 f∗ TT +fV M∗fT M∗Re h C(6) VLLC(6) ∗ TRR i f∗ V T,1 (A. A.1 Charged currents +fV M∗fT M∗Re h (C(6) VLR + C(6) VRR)C(6) ∗ TRR i f∗ V T,2  , (A.7) (A.7) JHEP03(2021)148 JHEP03(2021)148 where f∗ V V,1 ≡2mM∗4 −m2 M∗ ij(m2 k + m2 N) −(m2 k −m2 N)2 , f∗ V V,2 ≡12m2 M∗mkmN , f∗ TT ≡16  m4 M∗+ m2 M∗ ij(m2 k + m2 N) −2(m2 k −m2 N)2 , f∗ V T,1 ≡−24mN(m2 M∗+ m2 k −m2 N) , f∗ V T,2 ≡−24mk(m2 M∗−m2 k + m2 N) . (A.8) , f∗ TT ≡16  m4 M∗+ m2 M∗ ij(m2 k + m2 N) −2(m2 k −m2 N)2 , f∗ V T,1 ≡−24mN(m2 M∗+ m2 k −m2 N) , f∗ V T,2 ≡−24mk(m2 M∗−m2 k + m2 N) . (A.8) (A.8) For sterile neutrino decay For sterile neutrino decay For sterile neutrino decay 2 × 1 2 X spins |M(N →M∗+ lk)|2 = X spins |M(M∗→N + lk)|2 f∗ ab,i→g∗ ab,i , (A.9) (A.9) where ab = {V V, TT, V T}, i = {1, 2}, and g∗ V V,i = −f∗ V V,i, g∗ TT = −f∗ TT , g∗ V T,i = f∗ V T,i. The expression for the decay rates is given by The expression for the decay rates is given by Γ = p λ(m2 1, m2 2, m2 3) 16πm3 1 1 n X spins |M|2 (A.10) (A.10) where n is the appropriate spin-averaging factor, m1 is the mass of the decaying particle, and m2 and m3 are the masses of the final-state particles. The phase space function is defined as λ(m2 1, m2 2, m2 3) ≡m4 1 + m4 2 + m4 3 −2m2 1m2 2 −2m2 1m2 3 −2m2 2m2 3 . (A.11) (A.11) A.2 Sterile neutrino decays into neutral pseudoscalar mesons A.2 Sterile neutrino decays into neutral pseudoscalar mesons We follow ref. [63] and write the neutral weak axial current as JA Z,µ = −1 √ 2  jA 3,µ + 1 √ 3jA 8,µ −1 √ 6jA 0,µ + 1 √ 2jA ηc,µ + · · ·  , (A.12) (A.12) – 38 – – 38 – jA 3,µ = 1 √ 2(¯uγµγ5u −¯dγµγ5d) , jA 8,µ = 1 √ 6(¯uγµγ5u + ¯dγµγ5d −2¯sγµγ5s) , jA 0,µ = 1 √ 3(¯uγµγ5u + ¯dγµγ5d + ¯sγµγ5s) A (A.13) (A.13) jA ηc,µ = ¯cγµγ5c . A.1 Charged currents We define ⟨0|jA Z,µ|M0 a,P (q)⟩≡−ifM √ 2qµ , ⟨0|jA a,µ|M0 a,P (q)⟩≡ifa Mqµ , (A.14) (A.14) JHEP03(2021)148 for a = {0, 3, 8, ηc} and the M subscript labels the final-state pseudoscalar meson. Clearly we have fM = f3 M + 1 √ 3f8 M −1 √ 6f0 M + 1 √ 2fηc M . (A.15) (A.15) To clarify the notation: for neutral pions f0 π0 = f8 π0 = fηc π0 = 0 and fπ0 = f3 π0 = fπ±. For η and η′ mesons, we have f3 η(′) = fηc η(′) = 0 (neglecting isospin breaking), but we do need to take into account η-η′ mixing. We use the phenomenological parametrization in terms of two mixing angles f8 η f0 η f8 η′ f0 η′ ! = f8 cos θ8 −f0 sin θ0 f8 sin θ8 f0 cos θ0 ! , (A.16) (A.16) where the values of θ0,8 and f0,8 are given in table 9. We then obtain fη = f8 cos θ8 √ 3 + f0 sin θ0 √ 6 , fη′ = f8 sin θ8 √ 3 −f0 cos θ0 √ 6 . (A.17) (A.17) The decay width of N →νe + M0 P can now be written as The decay width of N →νe + M0 P can now be written as Γ(N →νeM0 P ) = 2 × G2 F f2m3 N|Ue4|2 32π 1 −m0 P 2 m2 N !2 , (A.18) (A.18) where we add a 2 to account for the Majorana nature of sterile neutrinos, f is given by fη, fη′, fηc/ √ 2 or fπ±, and m0 P is the mass of M0 P . A.3 Sterile neutrino decays into neutral vector mesons We write the vector component of the neutral weak current as jV Z,µ = 1 2 −4 3 sin2 θw  (¯uγµu + ¯cγµc) +  −1 2 + 2 3 sin2 θw  ¯dγµd + ¯sγµs  , (A.19) (A.19) where θw is the Weinberg angle. We define the currents jV ρ0,µ = 1 √ 2(¯uγµu −¯dγµd) , jV ω,µ = 1 √ 2(¯uγµu + ¯dγµd) , jV φ,µ = ¯sγµs , jV J,µ = ¯cγµc , (A.20) (A.20) – 39 – which correspond to the neutral vector mesons ρ0, ω, φ, and J/Ψ, respectively. We rewrite which correspond to the neutral vector mesons ρ0, ω, φ, and J/Ψ, respectively. We rewrite jV Z,µ = 1 √ 2(1−2 sin2 θw)jV ρ0,µ− √ 2 3 sin2 θwjV ω,µ+  −1 2 + 2 3 sin2 θw  jV φ,µ+(1 2−4 3 sin2 θw)jV J/Ψ, (A.2 (A.21) The hadronic matrix elements are defined as ( ) The hadronic matrix elements are defined as The hadronic matrix elements are defined as The hadronic matrix elements are defined as ⟨0|jV a,µ|M0 a,V (q, ϵ)⟩= ifaϵµ , (A.22) (A.22) where a = ρ0, ω, φ, J/Ψ. The decay width becomes where a = ρ0, ω, φ, J/Ψ. The decay width becomes where a = ρ0, ω, φ, J/Ψ. The decay width becomes Γ(N →νeM0 a,V ) = 2 × G2 F f2 ag2 a|Ue4|2m3 N 32πma2  1 + 2ma2 m2 N   1 −ma2 m2 N 2 , (A.23) JHEP03(2021)148 (A.23) where fa and ga are listed in table 10 and ma is the mass of M0 a,V . where fa and ga are listed in table 10 and ma is the mass of M0 a,V . B.1 Automizing three-body phase space integral calculations This work involves a large amount of three-body phase-space computations, which are straightforward but tedious to evaluate. We briefly discuss here our approach to automize these computations using Mathematica. In the rest-frame of the decaying pseudoscalar meson, the decay rate is given by Γ = 1 2M Z d3p′ 2p′0(2π)3 Z d3pl 2p0 l (2π)3 Z d3pN 2p0 N(2π)3 X |M|2(2π)4δ4(p −p′ −pl −pN) , (B.1) where p, p′, pl, and pN denote the momentum of the decaying meson, outgoing meson, SM lepton, and sterile neutrino, respectively, and M is the mass of the decaying pseudoscalar meson. P |M|2 denotes the spin-averaged product of the leptonic and hadronic matrix element squared. It can be decomposed into a hadronic form factor, which only depends on q2, where q ≡p −p′, and a function of four-momentum invariant scalar products. The form factors are defined below and the spin-averaged matrix elements are calculated with standard techniques and checked with PackageX [115]. We convert to four-dimensional integrals and write Γ = 1 2M 1 (2π)5 Z d4p′ Z d4pl Z d4pN δ(p′2 −m2)δ(p2 l −m2 l )δ(p2 N −m2 N) × X |M|2(2π)4δ4(p −p′ −pl −pN) , (B.2) where for notational convenience we have omitted three Heaviside step functions. We perform the pN integral by setting pN = q −pl and introduce the variable a via a factor of 1 = R da δ(a −q2) to obtain Γ = 1 2M 1 (2π)5 Z da Z d4p′ Z d4pl δ(a −q2)δ(p′2 −m2)δ(p2 l −m2 l )δ((q −pl)2 −m2 N) Γ = 1 2M 1 (2π)5 Z da Z d4p′ Z d4pl δ(a −q2)δ(p′2 −m2)δ(p2 l −m2 l )δ((q −pl)2 −m2 N) × X |M|2 pN=q−pl . (B.3) Γ = 1 2M 1 (2π)5 Z da Z d4p′ Z d4pl δ(a −q2)δ(p′2 −m2)δ(p2 l −m2 l )δ((q −pl)2 −m2 N) X |M|2 (B 3) × X |M|2 pN=q−pl . (B.3) (B.3) – 40 – – 40 – – 40 – Here m, ml, mN denote the masses of the outgoing meson, lepton, and sterile neutrino, respectively. The hadronic form factor contained in P |M|2 only depends on a and, together with three of the six scalar products Here m, ml, mN denote the masses of the outgoing meson, lepton, and sterile neutrino, respectively. B.1 Automizing three-body phase space integral calculations The hadronic form factor contained in P |M|2 only depends on a and, together with three of the six scalar products p′ · p = 1 2 M2 −a + m2 , p′ · q = 1 2 M2 −a −m2 , p · q = 1 2 M2 + a −m2 , (B. can be taken out of the p′ and pl integrals. The last delta function gives the additional relations pl · q = 1 2 a + m2 l −m2 N  , pl · p′ = pl · p −1 2 a + m2 l −m2 N  . (B.5) (B.5) JHEP03(2021)148 These relations imply that the spin-averaged matrix element squared can be written in the form X |M|2 pN=q−pl = N X n=0 cn(a)(pl · p)n , (B.6) (B.6) where cn(a) are process-dependent functions of a and particle masses, and they also contain the hadronic form factors. For our calculations we have N ≤2. The remaining integrals can be explicitly computed. We need IP = Z d4p′ δ(p′2 −m2)δ  a −(p −p′)2 = π 2 λ1/2(a, m2, M 2) M2 , (B.7) (B.7) and and In = Z d4pl δ(p2 l −m2 l )δ  (q −pl)2 −m2 N  (pl · p)n , (B.8) (B.8) for n = {0, 1, 2}. A straightforward calculation gives or n = {0, 1, 2}. A straightforward calculation gives I0 = π 2 λ1/2(a, m2 l , m2 N) a , I1 = (pl · q)(p · q) a I0 I2 = −1 3a (p · q)2 a  am2 l −4(pl · q)2 −M2  am2 l −(pl · q)2 I0 , (B.9) (B.9) where the scalar products appearing in I1,2 should be evaluated via eqs. (B.4) and (B.5) and are thus functions of a only. The final decay rate requires one remaining integral over a = q2 Γ = 1 2M 1 (2π)5 Z (M−m)2 (ml+mN)2 da IP N X n=0 cn(a)In . (B.10) (B.10) We have automized the above procedure in a few lines of Mathematica code. In certain cases when no or just simple hadronic form factors appear, the integrals can be performed analytically. When this is possible we have checked our results with the literature. In most cases, however, the integrals are computed numerically. We have automized the above procedure in a few lines of Mathematica code. B.1 Automizing three-body phase space integral calculations In certain cases when no or just simple hadronic form factors appear, the integrals can be performed analytically. When this is possible we have checked our results with the literature. In most cases, however, the integrals are computed numerically. – 41 – B.2 Definition of three-body decay form factors B.2 Definition of three-body decay form factors A sterile neutrino N can be produced via the decay of a pseudoscalar meson, MP , with mass M A sterile neutrino N can be produced via the decay of a pseudoscalar meson, MP , with mass M MP →M′ P/V + e± + N , (B.11) (B.11) where M′ P/V is a pseudoscalar or vector meson with mass m. For a final-state pseudoscalar meson, we require the following form factors: ⟨M′ P (p′)|¯q1γµq2|MP (p)⟩= f+(q2)  (p + p′)µ −M2 −m2 q2 qµ  + f0(q2)M2 −m2 q2 qµ , ⟨M′ P (p′)|¯q1q2|MP (p)⟩= fS(q2) , ⟨M′ P (p′)|¯q1σµνq2|MP (p)⟩= 2i M + m[pµp′ν −pνp′µ]fT (q2) , (B 12) JHEP03(2021)148 JHEP03(2021)148 (B.12) ( ) where qµ = pµ −p′µ. Applying the equations of motion, the scalar form factor becomes fS(q2) = f0(q2) M −m m1 −m2 , (B.13) (B.13) where m1 and m2 denote the mass of q1 and q2, respectively. A similar trick for the tensor form factor gives 2 fT (q2) = (M + m)2 q2  f+(q2) −f0(q2)  , (B.14) (B.14) which agrees fairly well with lattice computations of ref. [116] in cases where a comparison is possible. When a vector meson is produced additional form factors are required When a vector meson is produced additional form factors are required ⟨M′ V (p′, ϵ)|¯q1γµq2|MP (p)⟩=ig(q2)ϵµναβϵ∗ νPαqβ , ⟨M′ V (p′, ϵ)|¯q1γµγ5q2|MP (p)⟩=f(q2)ϵ∗µ + a+(q2)P µϵ∗· p + a−(q2)qµϵ∗· p, ⟨M′ V (p′, ϵ)|¯q1σµνq2|MP (p)⟩=g+(q2)ϵµναβϵ∗ αPβ + g−(q2)ϵµναβϵ∗ αqβ + g0(q2)ϵµναβpαp′ βp · ϵ∗, ⟨M′ V (p′, ϵ)|¯q1γ5q2|MP (p)⟩=fPSϵ∗· p , (B ) (B.15) ( ) where ϵ∗µ is the polarization vector of the vector meson, and P µ = pµ + p′µ. The pseudo- scalar form factor is given by fPS = 1 m1 + m2  f(q2) + a+(q2)(M2 −m2) + a−(q2)q2 . (B.16) (B.16) C Physical parameters, decay constants, and form factors We list all parameters we use in this paper in this section. The values of relevant CKM matrix elements are extracted from ref. [117] |Vud| = 0.974, |Vus| = 0.224, |Vub| = 0.00394, |Vcb| = 0.0422. (C.1) |Vcd| = 0.218, |Vud| = 0.974, |Vus| = 0.224, |Vcs| = 0.997, |Vub| = 0.00394, |Vcb| = 0.0422. (C.1) |Vcd| = 0.218, |Vud| = 0.974, |Vus| = 0.224, |Vcs| = 0.997, |Vub| = 0.00394, |Vcb| = 0.0422. (C.1) (C.1) – 42 – meson MP fM [MeV] meson MV fV M [MeV] D± 212 [118] D∗± 266 [119] D± s 249 [118] D∗± s 308 [119] B± 187 [118] K∗± 230 [120] B± c 434 [121] ρ± 209 [122] K± 155.6 [118] π± 130.2 [118] Table 8. Decay constants for charged pseudoscalar and vector mesons. Table 8. Decay constants for charged pseudoscalar and vector mesons. JHEP03(2021)148 f0 0.148 GeV [123] f8 0.165 GeV [123] fηc 0.335 GeV [124] θ0 -6.9◦[123] θ8 -21.2◦[123] Table 9. Decay constants and angles for η, η′ and ηc. Table 9. Decay constants and angles for η, η′ and ηc. meson M fa [GeV2] ga ρ0 [64] 0.171 1 −2 sin2 θw ω [64] 0.155 - 2 3 sin2 θw φ [64] 0.232 √ 2 −1 2 + 2 3 sin2 θw  J [125] 1.29 √ 2 1 2 −4 3 sin2 θw  Table 10. Decay constants and ga of neutral vector mesons. Table 10. Decay constants and ga of neutral vector mesons. Table 10. Decay constants and ga of neutral vector mesons. We use the quark masses at a renormalization scale of µ = 2 GeV in MS md = 4.7 MeV , ms = 93 MeV , mb = 4.18 GeV . (C.2) mu = 2.2 MeV , md = 4.7 MeV , ms = 93 MeV , mc = 1.27 GeV , mb = 4.18 GeV . (C.2) mu = 2.2 MeV , md = 4.7 MeV , ms = 93 MeV , mc = 1.27 GeV , mb = 4.18 GeV . (C.2) (C.2) Decay constants for pseudoscalar and vector mesons are given in tables 8. Parameters to calculate decay constants for the neutral pseudoscalar and vector mesons are given in tables 9 and 10, respectively. C.2 Form factors for D →M′ P r D →π and D →K transitions, we use the methods of ref. [127]. We write For D →π and D →K transitions, we use the methods of ref. [127]. We write f+/0 = f(0) + c  z(q2) −z(0)  h 1 + z(q2)+z(0) 2 i (1 −Pq2) , (C.6) (C.6) and list the best-fit parameter values in table 12. and list the best-fit parameter values in table 12. and list the best-fit parameter values in table 12. C.1 Form factors for B(s) →M′ P We apply the Bourrely-Caprini-Lellouch (BCL) method [63, 126] to parameterize the form factors, K f+(q2) = 1 1 −q2/m2 pole K−1 X k=0 b+ k  (z(q2))k −(−1)k−K k K z(q2)K  , f0(q2) = 1 1 −q2/m2 pole K−1 X k=0 b0 kz(q2)k , (C.3) (C.3) – 43 – – 43 – f mpole [GeV] b0 b1 b2 f B(s)→D(s) + ∞ 0.909 −7.11 66 f B(s)→D(s) 0 ∞ 0.794 −2.45 f Bs→K + mB∗= 5.325 0.360 −0.828 1.1 f Bs→K 0 mB∗(0+) = 5.65 0.233 0.197 f B→π + mB∗= 5.325 0.404 −0.68 −0.86 f B→π 0 ∞ 0.49 −1.61 Table 11. Best fit parameters values for the form factors in B →D and B →π transitions from ref. [128]. JHEP03(2021)148 JHEP03(2021)148 Table 11. Best fit parameters values for the form factors in B →D and B →π transitions fro ref. [128]. Table 11. Best fit parameters values for the form factors in B →D and B →π transitions from ref. [128]. f f(0) c P [GeV2] f D→K + 0.7647 −0.066 0.224 f D→K 0 0.7647 −2.084 0 f D→π + 0.6117 −1.985 0.1314 f D→π 0 0.6117 −1.188 0.0342 f f(0) c P [GeV2] f D→K + 0.7647 −0.066 0.224 f D→K 0 0.7647 −2.084 0 f D→π + 0.6117 −1.985 0.1314 f D→π 0 0.6117 −1.188 0.0342 Table 12. Best fit parameters for the form factors in D →K and D →π transitions from refs. [63, 127]. Table 12. Best fit parameters for the form factors in D →K and D →π transitions from refs. [63, 127]. where z(q2) is the function z(q2) = p t+ −q2 −√t+ −t0 p t+ −q2 + √t+ −t0 , (C.4) (C.4) th t+ = (M + m)2 and t0 = (M + m)( √ M −√m)2. We set K = 3 and f+(0) = f0(0). his determines b0 through with t+ = (M + m)2 and t0 = (M + m)( √ M −√m)2. We set K = 3 and f+(0) = f0(0). This determines b0 2 through b0 2 = f+(0) −b0 0 −b0 1z(0) z(0)2 . (C.5) b0 2 = f+(0) −b0 0 −b0 1z(0) z(0)2 . (C.5) (C.5) The best-fit parameter values are given in table 11. C.2 Form factors for D →M′ P C.3 Form factors for B(s) and D decaying into M′ V Eq. (B.15) contains seven form factors which must be determined. The pseudoscalar form factor is related to f(q2) and a±(q2) through eq. (B.16). To better present these form factors – 44 – f(0) fV (0) fA0(0) fA1(0) fA2(0) fT1(0) fT2(0) fT3(0) D →K∗ 1.03 0.76 0.66 0.49 0.78 0.78 0.45 D →ρ 0.9 0.66 0.59 0.49 0.66 0.66 0.31 B →D∗ 0.76 0.69 0.66 0.62 0.68 0.68 0.33 B →ρ 0.31 0.30 0.26 0.24 0.27 0.27 0.19 Bs →D∗ s 0.95 0.67 0.70 0.75 Bs →K∗ 0.38 0.37 0.29 0.26 0.32 0.32 0.23 Table 13. Part I: Best-fit parameters values for eqs. (C.8)–(C.9) from refs. [63, 129]. Table 13. Part I: Best-fit parameters values for eqs. (C.8)–(C.9) from refs. [63, 129]. σ1 σ1(V ) σ1(A0) σ1(A1) σ1(A2) σ1(T1) σ1(T2) σ1(T3) D →K∗ 0.27 0.17 0.30 0.67 0.25 0.02 1.23 D →ρ 0.46 0.36 0.50 0.89 0.44 0.38 1.10 B →D∗ 0.57 0.59 0.78 1.40 0.57 0.64 1.46 B →ρ 0.59 0.54 0.73 1.40 0.60 0.74 1.42 Bs →D∗ s 0.372 0.350 0.463 1.04 Bs →K∗ 0.66 0.60 0.86 1.32 0.66 0.98 1.42 Table 14. Part II: Best-fit parameters values for eqs. (C.8)–(C.9) from refs. [63, 129]. JHEP03(2021)148 and follow the conventions of ref. [129], we define the following dimensionless combinations and follow the conventions of ref. [129], we define the following dimensionless combinations V (q2) = (M + m)g(q2) , A1(q2) = f(q2) M + m , A2(q2) = −(M + m)a+(q2) , A0 = 1 2m  f(q2) + a−(q2)q2 + a+(q2)P · q  , T1 = −g+(q2) , T2(q2) = −g+(q2) − q2 P · qg−(q2) , T3(q2) = g−(q2) −P · q 2 g0(q2) . (C.7) (C.7) and choose the following three-parameter formula and choose the following three-parameter formula f(q2) = f(0) (1 −q2/M 2 pole)(1 −σ1q2/M 2 pole + σ2q4/M 4 pole) , (C.8) (C.8) to describe V , T1 and A0. M is the pole mass, which is MP (0−) for A0 and MV (1−) for V and T1. For the remaining form factors A1, A2, T2 and T3, we use the simpler form [129] f(q2) = f(0) 1 −σ1q2/M 2 V + σ2q4/M 4 V . (C.9) (C.9) In all scenarios we consider, the transition Bs →D∗ s is only induced by SM weak interac- tions and we do not list form factors associated to BSM currents. C.3 Form factors for B(s) and D decaying into M′ V The values of the best fit parameters are given in table 13 to table 15. C.4 The semi-leptonic decay of Ds Through the semi-leptonic decay of Ds meson, η, η′, K0, K∗ 0 and φ can be produced. The pseudoscalar mesons η and η′ mix with each other and we can consider them as the – 45 – σ2, mpole σ2(V ) σ2(A0) σ2(A1) σ2(A2) σ2(T1) σ2(T2) σ2(T3) MP (GeV) MV (GeV) D →K∗ 0 0 0.20 0.16 0 1.80 0.34 mDs = 1.968 mD∗s = 2.112 D →ρ 0 0 0 0 0 0.50 0.17 mD = 1.87 mD∗= 2.01 B →D∗ 0 0 0 0.41 0 0 0.50 mBc = 6.275 mB∗ c = 6.331 B →ρ 0 0 0.10 0.50 0 0.19 0.51 mB = 5.279 mB∗= 5.325 Bs →D∗ s 0.561 0.600 0.510 0.070 mBc = 6.275 mB∗ c = 6.331 Bs →K∗ 0.30 0.16 0.60 0.54 0.31 0.90 0.62 mBs = 5.367 mB∗ s = 5.415 Table 15. Part III: Best-fit parameters for eqs. (C.8)–(C.9) from refs. [63, 129]. Table 15. Part III: Best-fit parameters for eqs. (C.8)–(C.9) from refs. [63, 129]. Ds →ηs(mη) Ds →ηs(mη′) Ds →φ f+ f0 fT f+ f0 fT V A0 A1 A2 T1 T2 T3 f(0) 0.78 0.78 0.80 0.78 0.78 0.94 1.10 0.73 0.64 0.47 0.77 0.77 0.46 σ1 0.23 0.33 0.24 0.23 0.21 0.24 0.26 0.10 0.29 0.63 0.25 0.02 1.34 σ2 0 0.38 0 0 0.76 0 0 0 0 0 0 2.01 0.45 Table 16. Part I: Best-fit parameters for Ds decays from ref. [129]. JHEP03(2021)148 Table 16. Part I: Best-fit parameters for Ds decays from ref. [129]. Ds →K Ds →K∗ f+ f0 fT V A0 A1 A2 T1 T2 T3 f(0) 0.72 0.72 0.77 1.04 0.67 0.57 0.42 0.71 0.71 0.45 σ1 0.20 0.41 0.24 0.24 0.20 0.29 0.58 0.22 −0.06 1.08 σ2 0 0.7 0 0 0 0.42 0 0 0.44 0.68 Table 17. Part II: Best-fit parameters for Ds decays from ref. [129]. Table 17. Part II: Best-fit parameters for Ds decays from ref. [129]. mixtures of ηn ≡¯uu+ ¯dd √ 2 and ηs ≡¯ss [129] η = cos(ψ)ηn −sin(ψ)ηs , η′ = sin(ψ)ηn + cos(ψ)ηs , (C.10) η = cos(ψ)ηn −sin(ψ)ηs , η′ = sin(ψ)ηn + cos(ψ)ηs , (C.10) (C.10) where the mixing angle ψ is around 40◦[129–131]. References [1] P. Minkowski, µ →eγ at a Rate of One Out of 109 Muon Decays?, Phys. Lett. B 67 (1977) 421 [INSPIRE]. [1] P. Minkowski, µ →eγ at a Rate of One Out of 109 Muon Decays?, Phys. Lett. B 67 (1977) 421 [INSPIRE]. [2] T. Yanagida, Horizontal gauge symmetry and masses of neutrinos, Conf. Proc. C 7902131 (1979) 95 [INSPIRE]. [2] T. Yanagida, Horizontal gauge symmetry and masses of neutrinos, Conf. Proc. C 7902131 (1979) 95 [INSPIRE]. [3] R.N. Mohapatra and G. Senjanovi´c, Neutrino Mass and Spontaneous Parity Nonconservation, Phys. Rev. Lett. 44 (1980) 912 [INSPIRE]. [4] M. Gell-Mann, P. Ramond and R. Slansky, Complex Spinors and Unified Theories, Conf. Proc. C 790927 (1979) 315 [arXiv:1306.4669] [INSPIRE]. JHEP03(2021)148 JHEP03(2021)148 [5] J. Schechter and J.W.F. Valle, Neutrino Masses in SU(2) x U(1) Theories, Phys. Rev. D 22 (1980) 2227 [INSPIRE]. [6] M. Drewes, The Phenomenology of Right Handed Neutrinos, Int. J. Mod. Phys. E 22 (2013) 1330019 [arXiv:1303.6912] [INSPIRE]. [7] A. Kusenko, Sterile neutrinos: The Dark side of the light fermions, Phys. Rept. 481 (2009) 1 [arXiv:0906.2968] [INSPIRE]. [8] M. Drewes et al., A White Paper on keV Sterile Neutrino Dark Matter, JCAP 01 (2017) 025 [arXiv:1602.04816] [INSPIRE]. [9] A. Boyarsky, M. Drewes, T. Lasserre, S. Mertens and O. Ruchayskiy, Sterile neutrino Dark Matter, Prog. Part. Nucl. Phys. 104 (2019) 1 [arXiv:1807.07938] [INSPIRE]. [10] S. Davidson, E. Nardi and Y. Nir, Leptogenesis, Phys. Rept. 466 (2008) 105 [arXiv:0802.2962] [INSPIRE]. [11] F.F. Deppisch, P.S. Bhupal Dev and A. Pilaftsis, Neutrinos and Collider Physics, New J. Phys. 17 (2015) 075019 [arXiv:1502.06541] [INSPIRE]. [12] D.A. Bryman and R. Shrock, Constraints on Sterile Neutrinos in the MeV to GeV Mass Range, Phys. Rev. D 100 (2019) 073011 [arXiv:1909.11198] [INSPIRE]. [13] R.N. Mohapatra and J.C. Pati, A Natural Left-Right Symmetry, Phys. Rev. D 11 (1975) 2558 [INSPIRE]. [14] J.C. Pati and A. Salam, Lepton Number as the Fourth Color, Phys. Rev. D 10 (1974) 275 [Erratum ibid. 11 (1975) 703] [INSPIRE]. [15] R.N. Mohapatra and G. Senjanovi´c, Neutrino Masses and Mixings in Gauge Models with Spontaneous Parity Violation, Phys. Rev. D 23 (1981) 165 [INSPIRE]. [16] M. Bando and K. Yoshioka, Sterile neutrinos in a grand unified model, Prog. Theor. Phys. 100 (1998) 1239 [hep-ph/9806400] [INSPIRE]. [17] C.-W. Chiang, G. Cottin, A. Das and S. Mandal, Displaced heavy neutrinos from Z′ decays at the LHC, JHEP 12 (2019) 070 [arXiv:1908.09838] [INSPIRE]. [18] I. Dorˇsner, S. C.4 The semi-leptonic decay of Ds The decay rates are [129] Γ(Ds →η + e + νe) = sin2(ψ)Γ(Ds →ηs(mη) + e + νe) , Γ(Ds →η′ + e + νe) = cos2(ψ)Γ(Ds →ηs(mη′) + e + νe) , (C.11) (C.11) where ηs(mη(′)) means we consider the mass of ηs as mη(′) when calculating the decay width. For the decay Ds →ηs/K0, we use eq. (C.8) to parameterize the form factors f+ and fT with Mpole = mD∗s/mD∗, and use eq. (C.9) to parameterize f0 with MV = mD∗s/mD∗. For the remaining decay channels, we can use the same method as that in C.3 with MP = mD, MV = mD∗for Ds →K∗ 0, and MP = mDs, MV = mD∗s for Ds →φ. All the related best fit values are given in tables 16 and 17. Open Access. This article is distributed under the terms of the Creative Commons Attribution License (CC-BY 4.0), which permits any use, distribution and reproduction in any medium, provided the original author(s) and source are credited. – 46 – References Fajfer, A. Greljo, J.F. Kamenik and N. Koˇsnik, Physics of leptoquarks in precision experiments and at particle colliders, Phys. Rept. 641 (2016) 1 [arXiv:1603.04993] [INSPIRE]. [19] F. del Aguila, S. Bar-Shalom, A. Soni and J. Wudka, Heavy Majorana Neutrinos in the Effective Lagrangian Description: Application to Hadron Colliders, Phys. Lett. B 670 (2009) 399 [arXiv:0806.0876] [INSPIRE]. – 47 – [20] Y. Liao and X.-D. Ma, Operators up to Dimension Seven in Standard Model Effective Field Theory Extended with Sterile Neutrinos, Phys. Rev. D 96 (2017) 015012 [arXiv:1612.04527] [INSPIRE]. [21] G. Cottin, J.C. Helo and M. Hirsch, Displaced vertices as probes of sterile neutrino mixing at the LHC, Phys. Rev. D 98 (2018) 035012 [arXiv:1806.05191] [INSPIRE]. [22] G. Cottin, J.C. Helo and M. Hirsch, Searches for light sterile neutrinos with multitrack displaced vertices, Phys. Rev. D 97 (2018) 055025 [arXiv:1801.02734] [INSPIRE]. [23] M. Drewes and J. Hajer, Heavy Neutrinos in displaced vertex searches at the LHC and HL-LHC, JHEP 02 (2020) 070 [arXiv:1903.06100] [INSPIRE]. [24] R.E. Shrock, New Tests For, and Bounds On, Neutrino Masses and Lepton Mixing, Phys. Lett. B 96 (1980) 159 [INSPIRE]. JHEP03(2021)148 JHEP03(2021)148 [25] R.E. Shrock, General Theory of Weak Leptonic and Semileptonic Decays. 1. Leptonic Pseudoscalar Meson Decays, with Associated Tests For, and Bounds on, Neutrino Masses and Lepton Mixing, Phys. Rev. D 24 (1981) 1232 [INSPIRE]. [26] J. Alwall et al., The automated computation of tree-level and next-to-leading order differential cross sections, and their matching to parton shower simulations, JHEP 07 (2014) 079 [arXiv:1405.0301] [INSPIRE]. [27] ATLAS collaboration, The ATLAS Experiment at the CERN Large Hadron Collider, 2008 JINST 3 S08003 [INSPIRE]. [28] CMS collaboration, The CMS Experiment at the CERN LHC, 2008 JINST 3 S08004 [INSPIRE]. [29] V.V. Gligorov, S. Knapen, M. Papucci and D.J. Robinson, Searching for Long-lived Particles: A Compact Detector for Exotics at LHCb, Phys. Rev. D 97 (2018) 015023 [arXiv:1708.09395] [INSPIRE]. [30] J.L. Feng, I. Galon, F. Kling and S. Trojanowski, ForwArd Search ExpeRiment at the LHC, Phys. Rev. D 97 (2018) 035001 [arXiv:1708.09389] [INSPIRE]. [31] FASER collaboration, FASER’s physics reach for long-lived particles, Phys. Rev. D 99 (2019) 095011 [arXiv:1811.12522] [INSPIRE]. [32] J.P. Chou, D. Curtin and H.J. Lubatti, New Detectors to Explore the Lifetime Frontier, Phys. Lett. B 767 (2017) 29 [arXiv:1606.06298] [INSPIRE]. [33] D. Curtin et al., Long-Lived Particles at the Energy Frontier: The MATHUSLA Physics Case, Rept. Prog. Phys. 82 (2019) 116201 [arXiv:1806.07396] [INSPIRE]. [38] J.L. Pinfold, The MoEDAL experiment: a new light on the high-energy frontier, Phil. Trans. Roy. Soc. Lond. A 377 (2019) 20190382. References [34] MATHUSLA collaboration, An Update to the Letter of Intent for MATHUSLA: Search for Long-Lived Particles at the HL-LHC, arXiv:2009.01693 [INSPIRE]. [35] V.V. Gligorov, S. Knapen, B. Nachman, M. Papucci and D.J. Robinson, Leveraging the ALICE/L3 cavern for long-lived particle searches, Phys. Rev. D 99 (2019) 015023 [arXiv:1810.03636] [INSPIRE]. [36] M. Bauer, O. Brandt, L. Lee and C. Ohm, ANUBIS: Proposal to search for long-lived neutral particles in CERN service shafts, arXiv:1909.13022 [INSPIRE]. [37] J.L. Pinfold, The MoEDAL Experiment at the LHC — A Progress Report, Universe 5 (2019) 47. [38] J.L. Pinfold, The MoEDAL experiment: a new light on the high-energy frontier, Phil. Trans. Roy. Soc. Lond. A 377 (2019) 20190382. – 48 – [39] SHiP collaboration, Conceptual design of the SHiP Target and Target Complex, CERN-SHiP-NOTE-2015-006 (2015). [40] SHiP collaboration, A facility to Search for Hidden Particles (SHiP) at the CERN SPS, arXiv:1504.04956 [INSPIRE]. [41] SHiP collaboration, The experimental facility for the Search for Hidden Particles at the CERN SPS, 2019 JINST 14 P03025 [arXiv:1810.06880] [INSPIRE]. [42] J. Ghiglieri and M. Laine, GeV-scale hot sterile neutrino oscillations: a derivation of evolution equations, JHEP 05 (2017) 132 [arXiv:1703.06087] [INSPIRE]. [43] P. Hern´andez, M. Kekic, J. L´opez-Pav´on, J. Racker and J. Salvado, Testable Baryogenesis in Seesaw Models, JHEP 08 (2016) 157 [arXiv:1606.06719] [INSPIRE]. JHEP03(2021)148 [44] E.K. Akhmedov, V.A. Rubakov and A.Y. Smirnov, Baryogenesis via neutrino oscillations, Phys. Rev. Lett. 81 (1998) 1359 [hep-ph/9803255] [INSPIRE]. [45] T. Asaka, S. Blanchet and M. Shaposhnikov, The nuMSM, dark matter and neutrino masses, Phys. Lett. B 631 (2005) 151 [hep-ph/0503065] [INSPIRE]. [46] T. Asaka and M. Shaposhnikov, The νMSM, dark matter and baryon asymmetry of the universe, Phys. Lett. B 620 (2005) 17 [hep-ph/0505013] [INSPIRE]. [47] M. Shaposhnikov, A Possible symmetry of the nuMSM, Nucl. Phys. B 763 (2007) 49 [hep-ph/0605047] [INSPIRE]. [48] L. Canetti, M. Drewes and M. Shaposhnikov, Sterile Neutrinos as the Origin of Dark and Baryonic Matter, Phys. Rev. Lett. 110 (2013) 061801 [arXiv:1204.3902] [INSPIRE]. [49] A. Donini, P. Hern´andez, J. Lopez-Pavon, M. Maltoni and T. Schwetz, The minimal 3+2 neutrino model versus oscillation anomalies, JHEP 07 (2012) 161 [arXiv:1205.5230] [INSPIRE]. [50] M. Chala and A. Titov, One-loop matching in the SMEFT extended with a sterile neutrino, JHEP 05 (2020) 139 [arXiv:2001.07732] [INSPIRE]. [51] W. Dekens, J. de Vries, K. Fuyuto, E. Mereghetti and G. References Zhou, Sterile neutrinos and neutrinoless double beta decay in effective field theory, JHEP 06 (2020) 097 [arXiv:2002.07182] [INSPIRE]. [52] U. Banerjee, J. Chakrabortty, S. Prakash, S.U. Rahaman and M. Spannowsky, Effective Operator Bases for Beyond Standard Model Scenarios: An EFT compendium for discoveries, JHEP 01 (2021) 028 [arXiv:2008.11512] [INSPIRE]. [53] S. Weinberg, Baryon and Lepton Nonconserving Processes, Phys. Rev. Lett. 43 (1979) 1566 [INSPIRE]. [54] B. Grzadkowski, M. Iskrzynski, M. Misiak and J. Rosiek, Dimension-Six Terms in the Standard Model Lagrangian, JHEP 10 (2010) 085 [arXiv:1008.4884] [INSPIRE]. [55] J.M. Butterworth, M. Chala, C. Englert, M. Spannowsky and A. Titov, Higgs phenomenology as a probe of sterile neutrinos, Phys. Rev. D 100 (2019) 115019 [arXiv:1909.04665] [INSPIRE]. [56] A. Caputo, P. Hern´andez, J. Lopez-Pavon and J. Salvado, The seesaw portal in testable models of neutrino masses, JHEP 06 (2017) 112 [arXiv:1704.08721] [INSPIRE]. [57] D. Barducci, E. Bertuzzo, A. Caputo and P. Hern´andez, Minimal flavor violation in the see-saw portal, JHEP 06 (2020) 185 [arXiv:2003.08391] [INSPIRE]. – 49 – [58] B.C. Canas, O.G. Miranda, A. Parada, M. Tortola and J.W.F. Valle, Updating neutrino magnetic moment constraints, Phys. Lett. B 753 (2016) 191 [Addendum ibid. 757 (2016) 568] [arXiv:1510.01684] [INSPIRE]. [59] L. Duarte, J. Peressutti and O.A. Sampayo, Majorana neutrino decay in an Effective Approach, Phys. Rev. D 92 (2015) 093002 [arXiv:1508.01588] [INSPIRE]. [60] L. Duarte, I. Romero, J. Peressutti and O.A. Sampayo, Effective Majorana neutrino decay, Eur. Phys. J. C 76 (2016) 453 [arXiv:1603.08052] [INSPIRE]. [61] J.C. Helo, M. Hirsch and Z.S. Wang, Heavy neutral fermions at the high-luminosity LHC, JHEP 07 (2018) 056 [arXiv:1803.02212] [INSPIRE]. [62] M. Hirsch and Z.S. Wang, Heavy neutral leptons at ANUBIS, Phys. Rev. D 101 (2020) 055034 [arXiv:2001.04750] [INSPIRE]. JHEP03(2021)148 JHEP03(2021)148 [63] K. Bondarenko, A. Boyarsky, D. Gorbunov and O. Ruchayskiy, Phenomenology of GeV-scale Heavy Neutral Leptons, JHEP 11 (2018) 032 [arXiv:1805.08567] [INSPIRE]. [64] P. Coloma, E. Fern´andez-Mart´ınez, M. Gonz´alez-L´opez, J. Hern´andez-Garc´ıa and Z. Pavlovic, GeV-scale neutrinos: interactions with mesons and DUNE sensitivity, Eur. Phys. J. C 81 (2021) 78 [arXiv:2007.03701] [INSPIRE]. [65] L.M. Johnson, D.W. McKay and T. Bolton, Extending sensitivity for low mass neutral heavy lepton searches, Phys. Rev. D 56 (1997) 2970 [hep-ph/9703333] [INSPIRE]. [66] V. Gribanov, S. Kovalenko and I. Schmidt, Sterile neutrinos in tau lepton decays, Nucl. Phys. B 607 (2001) 355 [hep-ph/0102155] [INSPIRE]. [67] D. Gorbunov and M. References Shaposhnikov, How to find neutral leptons of the νMSM?, JHEP 10 (2007) 015 [Erratum ibid. 11 (2013) 101] [arXiv:0705.1729] [INSPIRE]. [68] A. Atre, T. Han, S. Pascoli and B. Zhang, The Search for Heavy Majorana Neutrinos, JHEP 05 (2009) 030 [arXiv:0901.3589] [INSPIRE]. [69] ALICE collaboration, The ALICE experiment at the CERN LHC, 2008 JINST 3 S08002 [INSPIRE]. [70] ALICE collaboration, Performance of the ALICE Experiment at the CERN LHC, Int. J. Mod. Phys. A 29 (2014) 1430044 [arXiv:1402.4476] [INSPIRE]. [71] LHCb collaboration, The LHCb Detector at the LHC, 2008 JINST 3 S08005 [INSPIRE]. [71] LHCb collaboration, The LHCb Detector at the LHC, 2008 JINST 3 S08005 [INSPIRE]. [72] LHCb ll b ti LHCb D t t P f I t J M d Ph A 30 (2015) 1530022 [71] LHCb collaboration, The LHCb Detector at the LHC, 2008 JINST 3 S08005 [INSPIRE]. [72] LHCb collaboration, LHCb Detector Performance, Int. J. Mod. Phys. A 30 (2015) 1530022 [ Xi 1412 6352] [ SPIRE] [72] LHCb collaboration, LHCb Detector Performance, Int. J. Mod. Phys. A 30 (2015) 1530022 [arXiv:1412.6352] [INSPIRE]. [73] T. Sj¨ostrand, S. Mrenna and P.Z. Skands, PYTHIA 6.4 Physics and Manual, JHEP 05 (2006) 026 [hep-ph/0603175] [INSPIRE]. [74] T. Sj¨ostrand, S. Mrenna and P.Z. Skands, A Brief Introduction to PYTHIA 8.1, Comput. Phys. Commun. 178 (2008) 852 [arXiv:0710.3820] [INSPIRE]. [75] M. Cacciari, M. Greco and P. Nason, The pT spectrum in heavy flavor hadroproduction, JHEP 05 (1998) 007 [hep-ph/9803400] [INSPIRE]. [76] M. Cacciari, S. Frixione and P. Nason, The pT spectrum in heavy flavor photoproduction, JHEP 03 (2001) 006 [hep-ph/0102134] [INSPIRE]. [77] M. Cacciari, S. Frixione, N. Houdeau, M.L. Mangano, P. Nason and G. Ridolfi, Theoretical predictions for charm and bottom production at the LHC, JHEP 10 (2012) 137 [arXiv:1205.6344] [INSPIRE]. – 50 – [78] M. Cacciari, M.L. Mangano and P. Nason, Gluon PDF constraints from the ratio of forward heavy-quark production at the LHC at √ S = 7 and 13 TeV, Eur. Phys. J. C 75 (2015) 610 [arXiv:1507.06197] [INSPIRE]. [79] G. Aielli et al., Expression of interest for the CODEX-b detector, Eur. Phys. J. C 80 (2020) 1177 [arXiv:1911.00481] [INSPIRE]. [80] S. Alekhin et al., A facility to Search for Hidden Particles at the CERN SPS: the SHiP physics case, Rept. Prog. Phys. 79 (2016) 124201 [arXiv:1504.04855] [INSPIRE]. [81] H. Dreiner, G. Polesello and M. Thormeier, Bounds on broken R parity from NOMAD and CHORUS, hep-ph/0207160 [INSPIRE]. References [82] A. Dedes, H.K. Dreiner and P. Richardson, Attempts at explaining the NuTeV observation of dimuon events, Phys. Rev. D 65 (2001) 015001 [hep-ph/0106199] [INSPIRE]. JHEP03(2021)148 JHEP03(2021)148 [83] J. de Vries, H.K. Dreiner and D. Schmeier, R-Parity Violation and Light Neutralinos at SHiP and the LHC, Phys. Rev. D 94 (2016) 035006 [arXiv:1511.07436] [INSPIRE]. [84] D. Dercks, J. De Vries, H.K. Dreiner and Z.S. Wang, R-parity Violation and Light Neutralinos at CODEX-b, FASER, and MATHUSLA, Phys. Rev. D 99 (2019) 055039 [arXiv:1810.03617] [INSPIRE]. [85] D. Dercks, H.K. Dreiner, M. Hirsch and Z.S. Wang, Long-Lived Fermions at AL3X, Phys. Rev. D 99 (2019) 055020 [arXiv:1811.01995] [INSPIRE]. [86] J. Alimena et al., Searching for long-lived particles beyond the Standard Model at the Large Hadron Collider, J. Phys. G 47 (2020) 090501 [arXiv:1903.04497] [INSPIRE]. [87] H.K. Dreiner, J.Y. G¨unther and Z.S. Wang, R-parity Violation and Light Neutralinos at ANUBIS and MAPP, arXiv:2008.07539 [INSPIRE]. [88] P. Ilten, J. Thaler, M. Williams and W. Xue, Dark photons from charm mesons at LHCb, Phys. Rev. D 92 (2015) 115017 [arXiv:1509.06765] [INSPIRE]. [89] ATLAS collaboration, Search for light long-lived neutral particles produced in pp collisions at √s = 13 TeV and decaying into collimated leptons or light hadrons with the ATLAS detector, Eur. Phys. J. C 80 (2020) 450 [arXiv:1909.01246] [INSPIRE]. [90] A. Falkowski, J.T. Ruderman, T. Volansky and J. Zupan, Hidden Higgs Decaying to Lepton Jets, JHEP 05 (2010) 077 [arXiv:1002.2952] [INSPIRE]. [91] ATLAS collaboration, Search for long-lived neutral particles produced in pp collisions at √s = 13 TeV decaying into displaced hadronic jets in the ATLAS inner detector and muon spectrometer, Phys. Rev. D 101 (2020) 052013 [arXiv:1911.12575] [INSPIRE]. [92] ATLAS collaboration, Search for long-lived neutral particles in pp collisions at √s = 13 TeV that decay into displaced hadronic jets in the ATLAS calorimeter, Eur. Phys. J. C 79 (2019) 481 [arXiv:1902.03094] [INSPIRE]. [93] CHARM collaboration, A Search for Decays of Heavy Neutrinos in the Mass Range 0.5 GeV to 2.8 GeV, Phys. Lett. B 166 (1986) 473 [INSPIRE]. [94] G. Bernardi et al., Further limits on heavy neutrino couplings, Phys. Lett. B 203 (1988) 332 [INSPIRE]. [95] S.A. Baranov et al., Search for heavy neutrinos at the IHEP-JINR neutrino detector, Phys. Lett. B 302 (1993) 336 [INSPIRE]. [96] DELPHI collaboration, Search for neutral heavy leptons produced in Z decays, Z. Phys. C 74 (1997) 57 [Erratum ibid. 75 (1997) 580] [INSPIRE]. References – 51 – [97] N. Sabti, A. Magalich and A. Filimonova, An Extended Analysis of Heavy Neutral Leptons during Big Bang Nucleosynthesis, JCAP 11 (2020) 056 [arXiv:2006.07387] [INSPIRE]. [98] A. Boyarsky, M. Ovchynnikov, O. Ruchayskiy and V. Syvolap, Improved BBN constraints on Heavy Neutral Leptons, arXiv:2008.00749 [INSPIRE]. [99] L. Canetti and M. Shaposhnikov, Baryon Asymmetry of the Universe in the NuMSM, JCAP 09 (2010) 001 [arXiv:1006.0133] [INSPIRE]. [100] Planck collaboration, Planck 2018 results. VI. Cosmological parameters, Astron. Astrophys. 641 (2020) A6 [arXiv:1807.06209] [INSPIRE]. [101] SHiP collaboration, Sensitivity of the SHiP experiment to Heavy Neutral Leptons, JHEP 04 (2019) 077 [arXiv:1811.00930] [INSPIRE]. JHEP03(2021)148 [102] ATLAS collaboration, Search for type-III seesaw heavy leptons in dilepton final states in pp collisions at √s = 13 TeV with the ATLAS detector, arXiv:2008.07949 [INSPIRE]. [103] ATLAS collaboration, Search for heavy neutral leptons in decays of W bosons produced in 13 TeV pp collisions using prompt and displaced signatures with the ATLAS detector, JHEP 10 (2019) 265 [arXiv:1905.09787] [INSPIRE]. [104] J. Alcaide, S. Banerjee, M. Chala and A. Titov, Probes of the Standard Model effective field theory extended with a right-handed neutrino, JHEP 08 (2019) 031 [arXiv:1905.11375] [INSPIRE]. [105] A. Biek¨otter, M. Chala and M. Spannowsky, The effective field theory of low scale see-saw at colliders, Eur. Phys. J. C 80 (2020) 743 [arXiv:2007.00673] [INSPIRE]. [106] T. Li, X.-D. Ma and M.A. Schmidt, General neutrino interactions with sterile neutrinos in light of coherent neutrino-nucleus scattering and meson invisible decays, JHEP 07 (2020) 152 [arXiv:2005.01543] [INSPIRE]. [107] T. Li, X.-D. Ma and M.A. Schmidt, Constraints on the charged currents in general neutrino interactions with sterile neutrinos, JHEP 10 (2020) 115 [arXiv:2007.15408] [INSPIRE]. [108] R. Mandal, C. Murgui, A. Pe˜nuelas and A. Pich, The role of right-handed neutrinos in b →cτ ¯ν anomalies, JHEP 08 (2020) 022 [arXiv:2004.06726] [INSPIRE]. [109] COHERENT collaboration, Observation of Coherent Elastic Neutrino-Nucleus Scattering, Science 357 (2017) 1123 [arXiv:1708.01294] [INSPIRE]. [110] T. Han, J. Liao, H. Liu and D. Marfatia, Scalar and tensor neutrino interactions, JHEP 07 (2020) 207 [arXiv:2004.13869] [INSPIRE]. [111] I. Bischer and W. Rodejohann, General neutrino interactions from an effective field theory perspective, Nucl. Phys. B 947 (2019) 114746 [arXiv:1905.08699] [INSPIRE]. [112] J. Jones-P´erez, J. Masias and J.D. Ruiz-´Alvarez, Search for Long-Lived Heavy Neutrinos at the LHC with a VBF Trigger, Eur. Phys. J. C 80 (2020) 642 [arXiv:1912.08206] [INSPIRE]. [113] V. Cirigliano, W. Dekens, J. de Vries, M.L. References Graesser and E. Mereghetti, A neutrinoless double beta decay master formula from effective field theory, JHEP 12 (2018) 097 [arXiv:1806.02780] [INSPIRE]. [114] KamLAND-Zen collaboration, Search for Majorana Neutrinos near the Inverted Mass Hierarchy Region with KamLAND-Zen, Phys. Rev. Lett. 117 (2016) 082503 [Addendum ibid. 117 (2016) 109903] [arXiv:1605.02889] [INSPIRE]. – 52 – [115] H.H. Patel, Package-X: A Mathematica package for the analytic calculation of one-loop integrals, Comput. Phys. Commun. 197 (2015) 276 [arXiv:1503.01469] [INSPIRE]. [116] ETM collaboration, Tensor form factor of D →π(K)ℓν and D →π(K)ℓℓdecays with Nf = 2 + 1 + 1 twisted-mass fermions, Phys. Rev. D 98 (2018) 014516 [arXiv:1803.04807] [INSPIRE]. [117] Particle Data Group collaboration, Review of Particle Physics, Phys. Rev. D 98 (2018) 030001 [INSPIRE]. [118] J.L. Rosner, S. Stone and R.S. Van de Water, Leptonic Decays of Charged Pseudoscalar Mesons – 2015, arXiv:1509.02220 [INSPIRE]. [119] N. Dhiman and H. Dahiya, Decay constants of pseudoscalar and vector B and D mesons in the light-cone quark model, Eur. Phys. J. Plus 133 (2018) 134 [arXiv:1708.07274] [INSPIRE]. JHEP03(2021)148 JHEP03(2021)148 [120] H.K. Dreiner, M. Kr¨amer and B. O’Leary, Bounds on R-parity violating supersymmetric couplings from leptonic and semi-leptonic meson decays, Phys. Rev. D 75 (2007) 114016 [hep-ph/0612278] [INSPIRE]. [121] HPQCD collaboration, B-meson decay constants: a more complete picture from full lattice QCD, Phys. Rev. D 91 (2015) 114509 [arXiv:1503.05762] [INSPIRE]. [122] D. Ebert, R.N. Faustov and V.O. Galkin, Relativistic treatment of the decay constants of light and heavy mesons, Phys. Lett. B 635 (2006) 93 [hep-ph/0602110] [INSPIRE]. [123] R. Escribano, S. Gonz`alez-Sol´ıs, P. Masjuan and P. Sanchez-Puertas, η’ transition form factor from space- and timelike experimental data, Phys. Rev. D 94 (2016) 054033 [arXiv:1512.07520] [INSPIRE]. [124] CLEO collaboration, Study of B decays to charmonium states B →ηcK and B →χc0K, Phys. Rev. Lett. 86 (2001) 30 [hep-ex/0007012] [INSPIRE]. [125] D. Beˇcirevi´c, G. Duplanˇci´c, B. Klajn, B. Meli´c and F. Sanfilippo, Lattice QCD and QCD sum rule determination of the decay constants of ηc, J/ψ and hc states, Nucl. Phys. B 883 (2014) 306 [arXiv:1312.2858] [INSPIRE]. [126] C. Bourrely, I. Caprini and L. Lellouch, Model-independent description of B →πℓν decays and a determination of |V (ub)|, Phys. Rev. D 79 (2009) 013008 [Erratum ibid. 82 (2010) 099902] [arXiv:0807.2722] [INSPIRE]. [127] ETM collaboration, Scalar and vector form factors of D →π(K)ℓν decays with Nf = 2 + 1 + 1 twisted fermions, Phys. Rev. D 96 (2017) 054514 [Erratum ibid. References 99 (2019) 099902] [Erratum ibid. 100 (2019) 079901] [arXiv:1706.03017] [INSPIRE]. [128] Flavour Lattice Averaging Group collaboration, FLAG Review 2019: Flavour Lattice Averaging Group (FLAG), Eur. Phys. J. C 80 (2020) 113 [arXiv:1902.08191] [INSPIRE]. [129] D. Melikhov and B. Stech, Weak form-factors for heavy meson decays: An Update, Phys. Rev. D 62 (2000) 014006 [hep-ph/0001113] [INSPIRE]. [130] V.V. Anisovich, D.I. Melikhov and V.A. Nikonov, Photon-meson transition form-factors γπ0, γη and γη′ at low and moderately high Q2, Phys. Rev. D 55 (1997) 2918 [hep-ph/9607215] [INSPIRE]. [131] T. Feldmann, P. Kroll and B. Stech, Mixing and decay constants of pseudoscalar mesons, Phys. Rev. D 58 (1998) 114006 [hep-ph/9802409] [INSPIRE]. – 53 –
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Supporting “time awareness” in self-regulated learning: How do students allocate time during exam preparation?
Smart learning environments
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Abstract The development of technology enables diverse learning experiences nowadays, which shows the importance of learners’ self-regulated skills at the same time. Par‑ ticularly, the ability to allocate time properly becomes an issue for learners since time is a resource owned by all of them. However, they tend to struggle to manage their time well due to the lack of awareness of its existence. This study, hence, aims to reveal how learners allocate their time and evaluate the effectiveness of the time allocation by examining its effects on learners’ performance. We collect the learning logs of 116 seventh-graders from the online learning system implemented in a Japanese pub‑ lic junior high school. We look at the data in the time window of 34 days before the regular exam. Even though clustering techniques as a Learning Analytics method help identify different groups of learners, it is seldom applied to group students’ learning patterns with different levels of indicators extracted from their learning process data. In this study, we adopt the method to cluster students’ patterns of time allocation and find that better performance can result from the consistency of study time throughout the exam preparation period. Practical suggestions are then proposed for different roles involved in digital learning environments to facilitate students’ time management. Collectively, this study is expected to make contributions to smart learning environ‑ ments supporting self-regulated learning in the digital era. 1 Graduate School of Informatics, Kyoto University, Yoshidahonmachi, Sakyo Ward, Kyoto 606‑8501, Japan 2 Academic Center for Computing and Media Studies, Kyoto University, Yoshidahonmachi, Sakyo Ward, Kyoto 606‑8501, Japan Keywords:  Learning analytics, Time awareness, Time allocation, Self-regulated learning, Time management Smart Learning Environments Smart Learning Environments Hsu et al. Smart Learning Environments (2023) 10:21 https://doi.org/10.1186/s40561-023-00243-z Open Access Open Access 1 Graduate School of Informatics, Kyoto University, Yoshidahonmachi, Sakyo Ward, Kyoto 606‑8501, Japan 2 Academic Center for Computing and Media Studies, Kyoto University, Yoshidahonmachi, Sakyo Ward, Kyoto 606‑8501, Japan Supporting “time awareness” in self‑regulated learning: How do students allocate time during exam preparation? Chia‑Yu Hsu1*   , Izumi Horikoshi2, Huiyong Li2, Rwitajit Majumdar2 and Hiroaki Ogata2 Chia‑Yu Hsu1*   , Izumi Horikoshi2, Huiyong Li2, Rwitajit Majumdar2 and Hiroaki Ogata2 *Correspondence: hsu.chiayu.25t@st.kyoto-u.ac.jp Introductionh The digital era enables various learning experiences. Learners nowadays can make use of various resources to achieve different learning objectives. With such flexibility in learn- ing, it also becomes an issue for them to have effective self-regulated learning, which involves the development of learning strategies and the ability to manage available learn- ing resources. That is, self-regulated skill seems to be an essential skill for learners to lead competent and autonomous lives in this era (Manso-Vázquez et al.2016; Ozer & Yukselir, 2021). Time, in specific, is a common resource owned by everyone. When it comes to making use of time, it indicates the ways how people allocate their time to different activities. Hsu et al. Smart Learning Environments (2023) 10:21 Hsu et al. Smart Learning Environments (2023) 10:21 Page 2 of 15 This may determine the effectiveness of one’s behavior (Son & Kornell, 2008). In self- regulated learning, time management becomes a skill determining to what extent one can allocate time properly. As indicated by Liborius et al., (2017), learners struggle to develop the good skill of time management in general. Since time is invisible, it gets easy to miss it. To allocate time properly involves one being aware of the proper amounts of time allocated in proper activities at the proper time. When such information does not come into learners’ minds, they tend to have poor skill of time management. Namely, learners’ awareness of time plays a key role in their time management skills, which has raised concern about learners’ time allocation in studies related to self-regulated learn- ing. Huchendorf (1989) explored how students allocate their study time—both con- cerning which materials they select to study and how long they study them. He et al. (2019) introduced a system, LearnerExp, for both instructors and learners to explore and explain time management intuitively by visualizing the time allocated to learning activi- ties per day. These studies make learners’ time allocation visible, increasing time aware- ness and aiming to facilitate their skills of time management. Good skill of time management enables learners to maximize the net returns from obtained knowledge with minimized time investment. That is, in addition to showing how learners allocate their time, the relation between time allocation and performance could inform whether such behaviors are effective or not. This specifies the support of learners’ time management skills by indicating what is regarded as proper time alloca- tion. Literature review The idea of how people allocate time during study rooted before the cognitive revolu- tion and the derived research topics are key points in various educational psychology literature (Son & Kornell, 2008). Students’ allocation of study time is regarded as a kind of investment (Huchendorf, 1989). Serving as the effects of the investment, students get concerned about how to allocate their time to achieve the best performance. Therefore, there were several discussions on the relationship between time allocation and perfor- mance (Nonis & Hudson, 2010). When it comes to learners’ allocation of study time, studies first look into their total study time, which can be considered as course efforts. In the test of the inventory model of student time allocation, total study time was found to have a positive and significant effect on the demand for economic knowledge (Huchendorf, 1989). Beyond total study time, some studies consider learners’ time allocation from different perspectives. Dol- ton et al. (2003) divided the study time into the allocation of formal study (lectures and classes) and self-study. Recognizing that students adopt specific study habits for exams, Brown et al. (2017) also administered a survey to characterize how students envisioned spending time during class as well as what activities they expected to complete outside of class in preparation for exams. Similarly, Bratti and Staffolani (2013) investigated the effect of lecture attendance and self-study on undergraduate students’ academic perfor- mance. The results indicated that there might be bias in estimates of the elasticity of student performance if considering the study time from only one aspect. Another aspect such as time allocated in specific learning activities could be measured as students’ engagement with effortful study strategies (Jenifer et al., 2022). The study of Delucchi et al. (1987) showed that the total time indices with achievement did not show signifi- cant correlations. In the study of Dickinson and O’Connell (1990), weak relationships with test scores were found for total study time and time spent reviewing. A much stronger relationship was found for time spent organizing the course content. The previous works can be organized as groups about the inconsistent relationship between time allocation and performance (Nonis & Hudson, 2010). This may result from potential factors which affect students’ behavior, such as the difficulty of items, limited time to study, and so on. Wang et al. Introductionh Delucchi et al. (1987) examined students’ reported total study time, their allocation of that time to specific study activities, and relationships between such allocations and achievement. Dickinson and O’Connell (1990) also investigated the relationship between study time and test scores. The students were required to keep a continuous log of the amount of time that they spent reading, reviewing, and organizing for the course. In contrast to self-report data, trace data is immediately collected within the actual environment and could not degrade the accuracy and completeness of learners’ recall, perceptions, and interpretations of how they learn (Li et al. ; Li et al., 2018). With the rapid development of smartphones and wearable devices, it is more common to track fine-grained, time-stamped data from e-learning activities. Learning Analytics (LA) methods help valid inferences about a learner’s learning from the data of massive vol- ume and high rate of velocity (Viberg et al., 2020; Raga et al., 2018). Carlson et al. (2013) used an expectation–maximization approach to extract the error-making and hint-seek- ing behaviors of each student to characterize their learning strategy. Saint, Gašević, and Pardo (2018) used process mining techniques to identify strategic and tactical learner behaviors and found that certain temporal activity traits relate to performance in the summative assessments attached to the course. The above studies reflect the core characteristics of LA to generate an understanding of, and support for learners’ learning processes, achieved by high-resolution temporal data about various types of actions (Knight et al., 2017; Jivet et al., 2018). Time allocation is a dynamic behavior that occurs over time. Therefore, in this study, we adopt clustering techniques to measure learners’ time allocation and examine its relation to their per- formance in the exam preparation period. The objective is to understand how students allocate their time, and whether their performance is affected by the time allocation. Collectively, these are expected to inform us of practical ways to facilitate learners’ skills Hsu et al. Smart Learning Environments (2023) 10:21 Page 3 of 15 of time management, leading them to autonomous lives in today’s digital environments, and thus contribute to self-regulated learning in this digital era. Two research questions are: (RQ1) How do students allocate their study time in digital environments during the period of exam preparation? (RQ2) What effects can different ways of time allocation have on students’ exam performance? Introductionh To answer the research questions, we collect students’ learning logs in a digital environment implemented in a Japanese junior high school, design time allocation indicators, and then use them to find the association with students’ exam performance. Literature review (2016) investigated factors influencing the study time allocation of Chinese junior high school students and the age difference in the effect of habitual responding. Results indicated that agenda and habitual respond- ing have a combined effect on study time allocation and that the contribution of agenda is greater than that of habitual responding. Dunlosky and Ariel (2011) considered the effect of item difficulty in their study. Students often spend more time studying items Hsu et al. Smart Learning Environments (2023) 10:21 Page 4 of 15 difficult to learn (vs. less difficult ones), unless little time is available for study or the reward for the correct recall is higher for the less difficult items. In the latter contexts, this shift to focusing on easier items is an effective strategy, and notably, students do not always make this shift when doing so would be effective. f Being at different phases, students tend to change their time allocation in different activities considering the optimization of the achievement. The investigation of Konradt et al. (2021) revealed four distinct pacing style patterns that correspond to the allocation of effort over time during exam preparation: effort investment is allocated towards the deadline, steady, inverted U-shaped, and U-shaped. This emphasizes the importance of investigating the time allocation in students’ learning processes (Liboriusa et al., 2017). The educational production function is one of the accepted techniques for modeling the process of exam performance. Dolton et al. (2003) modeled the existence of a university production function based on individual student data relating to examination perfor- mance. Krohn and O’Connor (2005) extended the standard education production func- tion and student time allocation analysis to focus on the interactions between student effort and performance over the semester. The results suggested that students respond to higher midterm scores by reducing the number of hours they subsequently allocate to studying for the course, and that contrary to results based on semester totals, class attendance is not related to examination scores throughout the semester. Bensnes (2016) investigated what is in effect random variation in students’ preparation time before high- stakes exams. The study found that 5 extra days of preparation time increases exam scores. Figure  1 summarizes the aspects of time allocation which were investigated in the above studies. Research design In this study, we conduct two analyses to answer the research questions as Fig. 2 shows. Analysis 1 finds groups of patterns to show how students allocate their study time in dig- ital environments during the period of exam preparation, aimed to answer RQ1. Analy- sis 2 compares the performance between patterns to show the effects of different ways of time allocation on students’ exam performance, aimed to answer RQ2. The following details how the analyses are conducted. Analysis 1 We conduct time series clustering to find groups of patterns in terms of both study time in different types of materials and study time in different phases ahead of the exam. Analysis 2 We first look into the relationship between students’ total study time and performance. Then, we compare the performance between groups clustered in terms of study time in different types of materials and study time in different phases ahead of the exam via tests for mean comparison. Literature review In this study, we consider students’ time allocation in three aspects: (1) total study time, showing total efforts put in courses; (2) study time in different types of materials, dealing with the effects of different learning activities; (3) study time in differ- ent phases ahead of the exam, dealing with the effects of different timing during a period. Based on the literature review, it is known that time allocation could be considered in different aspects, and would lead to different results of the effects on performance. In Fig. 1  Aspects of investigated time allocation and approach to bridge the research gap Fig. 1  Aspects of investigated time allocation and approach to bridge the research gap Hsu et al. Smart Learning Environments (2023) 10:21 Page 5 of 15 addition, time allocation was measured as a summative value among these aspects. There seems to be a research gap where time allocation is measured with learning pro- cess data and the effects of each aspect on performance are collectively investigated. In terms of the research gap, this study considers the patterns derived from the learning logs as the learning process, extracts the features of learners’ time allocation via cluster- ing, and examines their effects on performance. We expect to bridge the research gap from the literature with this approach and show the significance of this study. Participants and study context We follow the purposive sampling strategy and include all the students from a Japanese public junior high school who provided consent as the participants of this study. The participants cover 116 seventh-graders with an average age of 13 years old. The school has implemented an online learning system and offered basic courses such as math, Eng- lish, and Japanese on that platform. During the preliminary investigation of the collected Fig. 2  Research design Fig. 2  Research design Hsu et al. Smart Learning Environments (2023) 10:21 Hsu et al. Smart Learning Environments Page 6 of 15 learning logs, we find that the participants were active in the math course. Hence, we select the math course in this study to extract their learning processes. Data collection and processing The data logged are from the participants’ daily learning activities conducted in the online learning system implemented in the school, i.e., the Learning & Evidence Ana- lytics Framework (LEAF) (Ogata et al., 2018, 2022). Figure 3.a shows the architecture of LEAF, which consists of a Learning Management System (LMS), an e-book reader (BookRoll), a Learning Analytics Dashboard (LAD), and a Learning Record Store (LRS). The LMS serves as the access point to BookRoll, which includes various learning materi- als, and enables different reading interactions. The interaction log data are stored in the LRS and then processed into learning feedback on the LAD. In the target course, learning materials in BookRoll include three types: textbook, exercises, and answers. Via personal tablets, students access these materials both at school and at home. In this study, we consider the hours out of school as the time of students’ self-regulated learning. Therefore, the reading logs are limited to the data from 6 p.m. to 8 a.m. the next day. Based on the research objective, we look at the data in the time window of 34 days before the regular exam, taking place on Oct. 1, 2020. We mark the time 3/2/1/ week(s) before the exam as different phases of the period considering students were reminded in that way on the school calendar. The data from 116 seventh- graders are collected and analyzed (Fig. 3b). Measures The objective of this study is to reveal students’ time allocation during the period of exam preparation and its effects on their performance. With the log data collected from the digital learning environment, we measure students’ time allocation based on Total Reading Time (TRT), Daily Reading Time (DRT), and Daily Progress (DP). On the other hand, we consider Performance Scores (PS) as students’ performance (Fig. 3.c). The fol- lowing describes the definition of each measure. Fig. 3  Extracting learning data from architecture of the learning & evidence analytics framework (LEAF) Fig. 3  Extracting learning data from architecture of the learning & evidence analytics framework (LEAF) Page 7 of 15 Hsu et al. Smart Learning Environments (2023) 10:21 Hsu et al. Smart Learning Environments (2023) 10:21 Fig. 4  Patterns of daily reading time (DRT) across material types Fig. 5  Patterns of daily progress (DP) for each material type Fig. 4  Patterns of daily reading time (DRT) across material types Fig. 4  Patterns of daily reading time (DRT) across material types Fig. 5  Patterns of daily progress (DP) for each material type Fig. 5  Patterns of daily progress (DP) for each material type Fig. 5  Patterns of daily progress (DP) for each material type Total reading time (TRT) TRT indicates the sum of the reading time in the whole period of exam preparation. TRT of each material type is calculated separately. On average, students read the textbook for 140.83 min (SD = 58.68), did the exercises for 256.76 min (SD = 130.41), and referred to the answers for 44.01 min (SD = 65.73) in total during the whole period. Daily reading time (DRT) DRT indicates the sum of the reading time in a day. It forms patterns of the reading time students spent every day during the period. DRT of each material type is calculated separately. From each student’s reading logs, we derive separate DRT patterns for each material type (Fig. 4.a). Then, we consider the patterns as an overall DRT pattern of a student (Fig. 4.b). Daily progress (DP) DP indicates the ratio of the accumulated DRT in a day to TRT of the period. It forms patterns of the progress students complete every day during the period. We calculate DP of each material type separately. From each student’s reading logs, we derive separate patterns of DP in each material type (Fig. 5). Measures Performance scores (PS) PS indicates students’ scores on the final standardized Math exam administered by the school, which were measured on a 100-point scale. On average, students got 43.84 points (SD = 14.13). Page 8 of 15 Hsu et al. Smart Learning Environments (2023) 10:21 Hsu et al. Smart Learning Environments Students’ time allocation patterns before exam Students’ time allocation patterns before exam We conduct time series clustering to find groups of patterns in terms of both the overall DRT patterns in the period and the separate patterns of DP in each material type. For each clustering, two is shown as the optimal number of clusters via the Sil- houette Analysis Method. Figure 6 shows the difference in the DRT patterns between the two clusters. In the beginning, (a) both spent time on textbooks, but (b) cluster 1 also spent time doing exercises. 3 weeks before the exam, (c) both spent time on textbooks and exercises. After 2 weeks before the exam, (d) both focused on doing exercise, and cluster 1 spent more time than cluster 2. Also, (e) cluster 1 studied the example answers at the same time. From such patterns, we identified that (f) the students in cluster 1 tend to do exercises and refer to answers throughout the period, which implies the drill-and- practice strategy for math learning. Table 1 compares the means of total DRT of each material type in different phases before the exam between the two clusters. It shows that cluster 1 has significantly higher means of total DRT in most of the material types across the period than clus- ter 2. Therefore, we label cluster 1 as active learners (N = 14), while cluster 2 is labeled as inactive learners (N = 102). Figure 7 shows the difference in the DP patterns between the two clusters. Consid- ering the slope where students’ daily progress changes, we label students as learn- ers with the following features studying each material type. The numbers of learners regarding the textbook and answers were not 116 because there were no logs for some learners who did not read the textbook or answers during the period of focus in our analysis. Textbook The early learners (N = 79) are those who complete over half of the pro- gress before the mid of the beginning, while the late learners (N = 35) are those who complete over half of the progress after the mid of the beginning. Exercises The quick learners (N = 66) are those who keep a higher percentage of progress throughout the period, while the slow learners (N = 50) are those who keep a lower percentage of progress. Fig. 6  Clusters of patterns of daily reading time (DRT) Fig. Students’ time allocation patterns before exam 6  Clusters of patterns of daily reading time (DRT) Page 9 of 15 Hsu et al. Smart Learning Environments (2023) 10:21 Table 1  Total DRT of each Material Type in 4 Phases Beginning 3 weeks ahead 2 weeks ahead 1 week ahead Mean Mean Mean Mean Active learner (cluster1) Inactive learner (cluster2) t p Active learner (cluster1) Inactive learner (cluster2) t p Active learner (cluster1) Inactive learners(cluster2) t p Active learners (cluster1) Inactive learners(cluster2) t p Textbook 105.14 94.46 1.06 47.36 41.79 1.32 1.00 0.78 0.49 0.71 1.95 − 1.28 .30 .20 .63 .20 Exercises 84.79 21.42 3.06 117.43 61.19 2.49 174.50 70.54 6.38 136.57 68.40 3.80  < .01  < .05  < .001  < .01 Answers 30.50 5.09 2.02 23.71 4.36 2.11 44.57 4.05 3.85 56.93 15.18 4.16 .06 .05  < .01  < .01 yp Beginning 3 weeks ahead 2 weeks ahead 1 week ahead Mean Mean Mean Mean Active learner (cluster1) Inactive learner (cluster2) t p Active learner (cluster1) Inactive learner (cluster2) t p Active learner (cluster1) Inactive learners(cluster2) t p Active learners (cluster1) Inactive learners(cluster2) t p Textbook 105.14 94.46 1.06 47.36 41.79 1.32 1.00 0.78 0.49 0.71 1.95 − 1.28 .30 .20 .63 .20 Exercises 84.79 21.42 3.06 117.43 61.19 2.49 174.50 70.54 6.38 136.57 68.40 3.80  < .01  < .05  < .001  < .01 Answers 30.50 5.09 2.02 23.71 4.36 2.11 44.57 4.05 3.85 56.93 15.18 4.16 .06 .05  < .01  < .01 Page 10 of 15 Hsu et al. Smart Learning Environments (2023) 10:2 Hsu et al. Smart Learning Environments Fig. 7  Clusters of patterns of daily progress (DP) Fig. 7  Clusters of patterns of daily progress (DP) Table 2  Difference between DRT Clusters on Performance M SD t p Active learners 41.00 14.02  − 0.81 .43 Inactive learners 44.24 14.17 Answers The consistent learners (N = 71) are those who complete half of the progress 2 weeks ahead of the exam (half of the preparation period) and complete the other 50% in the last half of the period, while the cramming learners (N = 39) are those who com- plete less than 25% of the progress 1 week ahead of the exam and increase their study time at the end of the period. Performance difference between clusters We look into the correlation between TRT of each material type and PS separately. As the effects of single TRT on students’ exam performance, TRT in each material type is found to be insignificantly correlated to PS. The respective correlation coefficients are ­rt (114) =  − 0.09, p = 0.34, ­re (114) =   − 0.02, p = 0.83, and ­ra (114) = 0.06, p = 0.50, ordered by textbook, exercises, and answers. We then compare the performance between the 2 groups clustered in terms of the overall DRT patterns in the period and the separate patterns of DP in each material type via independent samples t-test. The result does not show a significant difference between the performance of active learners and the others (Table 2). Table 3 summarizes the results of the t-test, comparing the performance between clus- ters of patterns derived from DP. The results show that consistent learners perform sig- nificantly better than cramming learners in the case of referring to answers. The students (early learners) completing over half of the progress on reading the textbook before the mid of the beginning do not have a significantly different performance from those who complete after that (later learners). Similar results show in the performance between quick learners and slow learners doing exercises. Hsu et al. Smart Learning Environments (2023) 10:21 Page 11 of 15 Table 3  Difference between DP clusters on performance M SD t p Textbook Early learners 42.22 13.33  − 1.59 .12 Late learners 46.71 14.20 Exercises Quick learners 46.00 12.65 1.86 .07 Slow learners 41.00 15.55 Answers Consistent learners 46.95 14.48 2.02  < .05 Cramming learners 41.31 13.18 Table 3  Difference between DP clusters on performance Implications Research Implications In this study, we measure how students allocate time with their learning processes data collected from a digital environment. The clustering technique helps extract different levels of indicators that indicate different aspects of students’ time allocation. Past studies tend to consider learners’ time allocation from a single perspec- tive, either the time allocated in certain activities or the time allocated in certain phases. That is, learners’ time allocation is regarded as a summative value. On the other hand, this study implies that learning process data with LA methods enable multiple perspec- tives on learners’ time allocation. In addition to a summative value, we consider time allocation as a pattern that informs how much time is allocated in what activity at which time point collectively. This not only enables understanding of learners’ time allocation but also implies another way to assess the skill of time management. Therefore, in terms of research on time allocation, LA methods could be the approach helping expand into the unknown. Finally, in terms of the derived patterns, we label the clusters with qualita- tive interpretation. Future research can focus on representing the patterns with quanti- tative statistics, such as variance or coefficients, and conducting clustering analysis with these variables. Then, an examination of whether the results are consistent with this study can be done to triangulate the features of students’ learning. Practical Implications Based on the clustering analysis, we identify groups of time allocation patterns and determine their effectiveness, which may also suggest learners’ skills in time management. That is, to facilitate the skill, some potential practice could be implied by the derived effectiveness. In this study, we find the patterns of students’ study time have more effects on performance than the amount of time allocated. This implies different suggestions for different roles involved in a digital learning environment. For learners, developing learning habits and studying consistently become crucial for effec- tive learning. For instructors, in terms of performance, keeping students studying seems to be more effective than informing them how much time they spend. They can guide them to set goals at the beginning so that the learning patterns would be given mean- ing. For designers of learning systems, the findings also consolidate the importance of visualizing students’ learning patterns and providing timely interventions in the learning processes. Discussion Key findingsf There have been inconsistent results regarding the relationship between students’ total study time and Hsu et al. Smart Learning Environments (2023) 10:21 Page 12 of 15 performance since other potential factors, such as the limited amount of time, or the difficulties of the items, might be affecting the relation (Dunlosky & Ariel, 2011; Nonis & Hudson, 2010). In this study, we also consider other factors. We find the results of performance comparison between different learning features in the case of each material type are inconsistent. This indicates that the types of learning materials might have dif- ferent effects on the relationship between time allocation and performance (Jenifer et al., 2022). We find no significant difference between the performance of students with the time allocation of different tendencies. This implies that the tendencies might not affect students’ performance. As previous studies suggested, students can have their learning. There is no common strategy applied to all students, but a strategy suitable for a certain group of students (Schmeck, 1988; Tian et al., 2007; Parra, 2016). This can be the reason why we did not find a significant difference between the performance. Discussion Key findingsf Different study time allocation patterns before the exam We consider students’ time allocation in three aspects. In terms of the whole period, students allocated their time mainly to doing exercises, followed by reading the textbook and referring to answers. In terms of the tendency of time allocation in material types across the period, students allocated their time to read the textbook in the early phases and do exercises and refer to answers across the period. In such a pattern, some students tended to allocate more time to doing exercises and referring to answers than others. In terms of the phases during the period, learners with different learning features could be identified from students’ time allocation in each material type. The findings show that doing exercises plays a main role in students’ math learning. This echoes the strategies indicated by Verschaffel et al. (2019). By practicing, students got more skillful. The findings of the tendency indicate students’ potential strategies for exam preparation. As indicated by Andergassen et al. (2014), students tended to under- stand the concepts first by reading the textbook and then doing exercises to strengthen their understanding. By referring to answers, students review their understanding (Higgins et al., 2019). We also identify learners with specific features echoing students’ behaviors indicated by Chung and Hsiao (2020). Considering the approaching of the exam, students might increase their study time to enhance the effects of learning, which is regarded as cramming behavior. Effects of different study time allocations on exam performance We compare students’ performance between different ways of time allocation. In terms of phases in the period, consistent learners referring to answers performed significantly better than those clus- tered as cramming learners, while no significant difference shows between the perfor- mance of early and late learners in the cases of reading the textbook or quick and slow learners in the cases of doing exercises. The performance between students’ tendencies of allocating time in different material types across the phases does not show a signifi- cant difference. Finally, in terms of the whole period, the time students allocated to each material type is not significantly correlated to their exam performance. i We do not find a correlation between the time allocated in the material types and exam performance. The findings echo what was indicated in previous studies. Implications For example, when a student is identified to show a pattern that might lead to low performance, the system can send a reminder message to make them closer to the Page 13 of 15 Hsu et al. Smart Learning Environments (2023) 10:21 Hsu et al. Smart Learning Environments pattern with better effects. With these practices, learners are enabled to develop the skill of time management. Contribution, limitation, and future work Based on the above discussion, we get an insight into learners’ time allocation extracted from a digital learning environment, proving that LA methods help understand how learners allocate time in their learning processes. Different ways of time allocation are shown and found to be consistent with the results of different past studies. This implies the contribution of this study to reveal the variety of time allocation via a research design with LA methods. On the other hand, this study shows significance in expanding the use of LA methods to understand students’ behaviors in math learning, which was discussed in the study of Li et al. (2021a, 2021b) as well. Practically, the visualization of time alloca- tion not only enables learners to be aware of their time use but also inspires the design of interventions motivating them to study consistently (Manso-Vázquez et  al., 2016; He et al., 2019). That is, this study can contribute to the support for developing learn- ers’ time management skills in practice. Collectively, we expect this study to contribute to the establishment of smart learning environments in which learners’ self-regulated learning can be facilitated. On the other hand, some limitations may underlie the research design. First, in this study, we extract data from the period of a certain exam. If data are retrieved from a broader window, namely periods of multiple exams, it would be possible to compose an effective sequence of learning patterns. For example, a sequence of pattern A, effective in period A, and pattern B, effective in period B, could be a recommendation so that learners’ learning could be supported from a long-term perspective. Second, we analyze students’ time allocation and then examine its effects on their performance. It indicates that different patterns can be categorized based on the effects on performance. However, another way for the analysis can be dividing students into groups based on their perfor- mance and then looking into the patterns of the groups. As Nonis and Hudson (2010) pointed out, personal study habits, such as taking notes, scheduling, and the ability to concentrate, could be related to students’ performance. The mentioned analysis design emphasizes the extraction of learning patterns with personal characteristics, which ena- bles personalized recommendations. Availability of data and materials y The datasets used and/or analysed during the current study are available from the corresponding author on reasonable request. Received: 16 September 2022 Accepted: 22 February 2023 Received: 16 September 2022 Accepted: 22 February 2023 Conclusionh This study is aimed to measure learners’ time allocation in digital environments and determine the effectiveness of such behaviors. We collect learners’ learning process data and adopt clustering techniques and relationship mining to reveal how learners allocate their time and whether it affects their performance. We find that: (1) Learners’ time allo- cation can be considered in terms of the total time allocated in a specific period, the time allocated in different phases of the period, and the time tended to be allocated in a specific activity. (2) The phases in which time is allocated could show a difference in the performance depending on the types of learning materials, while neither the total study time nor the tendency to certain activities has effects on learners’ performance. f The findings imply that LA methods help understand time allocation by enabling the extraction of different levels of indicators. Practical suggestions aiming to maintain the Hsu et al. Smart Learning Environments (2023) 10:21 Page 14 of 15 consistency of study time could also be provided to learners, instructors, and system designers respectively. The contribution of this study lies in the support for self-regu- lated learning taking place in digital learning environments by visualizing learners’ time allocation and evaluating its effectiveness. f The research design limits the possibility of concrete proposals on the possible design of the intervention. The results from different analysis designs enable different implica- tions to support learners’ learning. Therefore, future works can look into learners’ time allocation from other perspectives with different research designs to enable more pos- sible solutions to facilitate learners’ skills of time management, helping them with effec- tive self-regulated learning in smart learning environments. Abbreviations LA Learning analytics LEAF Learning & evidence analytics framework LMS Learning management system LAD Learning analytics dashboard LRS Learning record store TRT​ Total reading time DRT Daily reading time DP Daily progress PS Performance scores Acknowledgements Not applicable Author contributions CH performed the data analysis and drafted the manuscript. IH, HL, RM and HO provided insights and reviewed the manuscript. RM and HO acquired funding for the research. All authors read and approved the final manuscript. Funding This work is funded by NEDO Special Innovation Program on AI and Big Data JPNP18013, NEDO JPNP20006, JSPS KAK‑ ENHI Grant-in-Aid for Scientific Research (B) 22H03902, JSPS KAKENHI Grant-in-Aid for Early-Career Scientists 20K20131. Funding Funding This work is funded by NEDO Special Innovation Program on AI and Big Data JPNP18013, NEDO JPNP20006, JSPS KAK‑ ENHI Grant-in-Aid for Scientific Research (B) 22H03902, JSPS KAKENHI Grant-in-Aid for Early-Career Scientists 20K20131. Conclusionh Availability of data and materials The datasets used and/or analysed during the current study are available from the corresponding author on reasonable request. References Andergassen, M., Mödritscher, F., & Neumann, G. (2014). Practice and repetition during exam preparation in blended learning courses: Correlations with learning results. Journal of Learning Analytics, 1(1), 48–74. Bensnes, S. S. (2016). Preparation time, exam scores, and tertiary education: How preparation time affects exam scores, and higher education outcomes. Working Paper Series, 3, 17216. Bratti, M., & Staffolani, S. (2013). Student time allocation and educational production functions. Annals of Economics and Statistics. https://​doi.​org/​10.​2307/​23646​328 Brown, T. L., Brazeal, K. R., & Couch, B. A. (2017). First-year and non-first-year student expectations regarding in-class and out-of-class learning activities in introductory biology. Journal of Microbiology & Biology Education, 18(1), 18–21. Carlson, R., Genin, K., Rau, M. A., & Scheines, R. (2013). Student profiling from tutoring system log data: When do multiple graphical representations matter? In Proceedings of the 6th International Conference on Educational Data Mining. Chung, C. Y., & Hsiao, I. H. (2020). Investigating patterns of study persistence on self-assessment platform of programming problem-solving. In Proceedings of the 51st ACM technical symposium on computer science education (pp. 162–168). Delucchi, J. J., Rohwer, W. D., Jr., & Thomas, J. W. (1987). Study time allocation as a function of grade level and course characteristics. Contemporary Educational Psychology, 12(4), 365–380. Dickinson, D. J., & O’Connell, D. Q. (1990). Effect of quality and quantity of study on student grades. The Journal of Educa- i l R h 83(4) 227 231 References A d Andergassen, M., Mödritscher, F., & Neumann, G. (2014). Practice and repetition during exam preparation in blended learning courses: Correlations with learning results. Journal of Learning Analytics, 1(1), 48–74. B S S (2016) P i i d i d i H i i ff Andergassen, M., Mödritscher, F., & Neumann, G. (2014). Practice and repetition during exam preparation in blended learning courses: Correlations with learning results. Journal of Learning Analytics, 1(1), 48–74. Bensnes, S. S. (2016). Preparation time, exam scores, and tertiary education: How preparation time affects exam scores, and higher education outcomes. Working Paper Series, 3, 17216. Bratti, M., & Staffolani, S. (2013). Student time allocation and educational production functions. Annals of Economics and Statistics. https://​doi.​org/​10.​2307/​23646​328 Brown, T. L., Brazeal, K. R., & Couch, B. A. (2017). First-year and non-first-year student expectations regarding in-class and out-of-class learning activities in introductory biology. Journal of Microbiology & Biology Education, 18(1), 18–21. Carlson, R., Genin, K., Rau, M. A., & Scheines, R. (2013). Student profiling from tutoring system log data: When do multiple graphical representations matter? In Proceedings of the 6th International Conference on Educational Data Mining. Chung, C. Y., & Hsiao, I. H. (2020). Investigating patterns of study persistence on self-assessment platform of programming problem-solving. In Proceedings of the 51st ACM technical symposium on computer science education (pp. 162–168). Delucchi, J. J., Rohwer, W. D., Jr., & Thomas, J. W. (1987). Study time allocation as a function of grade level and course characteristics. Contemporary Educational Psychology, 12(4), 365–380. Dickinson, D. J., & O’Connell, D. Q. (1990). Effect of quality and quantity of study on student grades. The Journal of Educa- ti l R h 83(4) 227 231 Bensnes, S. S. (2016). Preparation time, exam scores, and tertiary education: How preparation time affects exam scores, and higher education outcomes. Working Paper Series, 3, 17216. Brown, T. L., Brazeal, K. R., & Couch, B. A. (2017). First-year and non-first-year student expectations regarding in-class and out-of-class learning activities in introductory biology. Journal of Microbiology & Biology Education, 18(1), 18–21. Carlson, R., Genin, K., Rau, M. A., & Scheines, R. (2013). Student profiling from tutoring system log data: When do multiple graphical representations matter? In Proceedings of the 6th International Conference on Educational Data Mining. Chung, C. Y., & Hsiao, I. H. (2020). Investigating patterns of study persistence on self-assessment platform of programming problem-solving. Author contributions CH performed the data analysis and drafted the manuscript. IH, HL, RM and HO provided insights and reviewed the manuscript. RM and HO acquired funding for the research. All authors read and approved the final manuscript. p g The authors declare that they have no competing interests. The authors declare that they have no competing interests. Dickinson, D. J., & O’Connell, D. Q. (1990). Effect of quality and quantity of study on student grades. The Journal of Educa- tional Research, 83(4), 227–231. References A d Viberg, O., Khalil, M., & Baars, M. (2020). Self-regulated learning and learning analytics in online learning environments: A review of empirical research. In Proceedings of the tenth international conference on learning analytics & knowledge (pp. 524–533). Wang, F., Qin, Q., & Jiang, Y. (2016). Allocation of study time in chinese junior school students: habitual responding, item difficulty, and time constraints. Frontiers in Psychology, 7, 639. References A d B., Rozek, C. S., Levine, S. C., & Beilock, S. L. (2022). Effort (less) exam preparation: Math anxiety predicts the avoid‑ Jenifer, J. B., Rozek, C. S., Levine, S. C., & Beilock, S. L. (2022). Effort (less) exam preparation: Math anxiety predicts t ance of effortful study strategies. Journal of Experimental Psychology: General. https://​doi.​org/​10.​1037/​xge00 f y ance of effortful study strategies. Journal of Experimental Psychology: General. https://​doi.​org/​10.​1037/​xge00​01202f f Jivet, I., Scheffel, M., Specht, M., & Drachsler, H. (2018). License to evaluate: Preparing learning analytics dashboards for Jivet, I., Scheffel, M., Specht, M., & Drachsler, H. (2018). License to evaluate: Preparing learning analytics dashboards for educational practice In Proceedings of the 8th international conference on learning analytics and knowledge (pp Jivet, I., Scheffel, M., Specht, M., & Drachsler, H. (2018). License to evaluate: Preparing learning analytics dashboards for educational practice. In Proceedings of the 8th international conference on learning analytics and knowledge (pp. 31–40) educational practice. In Proceedings of the 8th international conference on learning analytics and knowledge (pp. 31–40). Knight, S., Wise, A. F., & Chen, B. (2017). Time for change: Why learning analytics needs temporal analysis. Journal of Learn- ing Analytics, 4(3), 7–17. Konradt, U., Ellwart, T., & Gevers, J. (2021). Wasting effort or wasting time? A longitudinal study of pacing styles as a pre‑ dictor of academic performance. Learning and Individual Differences, 88, 102003. Krohn, G. A., & O’Connor, C. M. (2005). Student effort and performance over the semester. The Journal of Economic Educa- tion, 36(1), 3–28. Li, J., Majumdar, R., & Ogata, H. (2021b). Mining mathematics learning strategies of high and low performing students using log data. In 2021b International conference on advanced learning technologies (ICALT) (pp. 229–230). IEEE. g g g g pp Li, H., Flanagan, B., Konomi, S. I., & Ogata, H. (2018). Measuring behaviors and identifying indicators of self-regulation in computer-assisted language learning courses. Research and Practice in Technology Enhanced Learning, 13(1), 1–12. Li, H., Flanagan, B., Konomi, S. I., & Ogata, H. (2018). Measuring behaviors and identifying indicators of self-regulation in i d l l i R h d P i i T h l E h d L i 13(1) 1 12 Li, H., Flanagan, B., Konomi, S. I., & Ogata, H. (2018). Measuring behaviors and identifying indicators of self-regulation in computer-assisted language learning courses. Research and Practice in Technology Enhanced Learning, 13(1), 1–12. Li, H., Majumdar, R., Chen, M. R. References A d In Proceedings of the 51st ACM technical symposium on computer science education (pp. 162–168). Delucchi, J. J., Rohwer, W. D., Jr., & Thomas, J. W. (1987). Study time allocation as a function of grade level and course characteristics. Contemporary Educational Psychology, 12(4), 365–380.f Dickinson, D. J., & O’Connell, D. Q. (1990). Effect of quality and quantity of study on student grades. The Journal of Educa- tional Research, 83(4), 227–231. Page 15 of 15 Hsu et al. Smart Learning Environments (2023) 10:21 Dolton, P., Marcenaro, O. D., & Navarro, L. (2003). The effective use of student time: A stochastic frontier production func‑ tion case study. Economics of Education Review, 22(6), 547–560. y , , Dunlosky, J., & Ariel, R. (2011). Self-regulated learning and the allocation of study time. Advances in Research and Theory Dunlosky, J., & Ariel, R. (2011). Self-regulated learning and the alloca Dunlosky, J., & Ariel, R. (2011). Self-regulated learning and the allocation of study time. Advances in Research and Theory (pp. 103–140). Elsevier. https://​doi.​org/​10.​1016/​B978-0-​12-​385527-​5.​00004-8 Dunlosky, J., & Ariel, R. (2011). Self regulated learning and the allocation of study time. Advances in Research and Theory (pp. 103–140). Elsevier. https://​doi.​org/​10.​1016/​B978-0-​12-​385527-​5.​00004-8 (pp. 103–140). Elsevier. https://​doi.​org/​10.​1016/​B978-0-​12-​38552 pp p g He, H., Zheng, Q., & Dong, B. (2019, May). LearnerExp: Exploring and explaining the time management of online learning activity In The World Wide Web Conference (pp 3521–3525) pp p g He, H., Zheng, Q., & Dong, B. (2019, May). LearnerExp: Exploring and explaining the time management of online learning He, H., Zheng, Q., & Dong, B. (2019, May). LearnerExp: Exploring and explaining the ti e, H., Zheng, Q., & Dong, B. (2019, May). LearnerExp: Exploring an activity. In The World Wide Web Conference (pp. 3521–3525). y Higgins, K., Huscroft-D’Angelo, J., & Crawford, L. (2019). Effects of technology in mathematics on achievement, motiva‑ tion and attit de A meta anal sis Jo rnal of Ed cational Comp ting Research 57(2) 283 319 Higgins, K., Huscroft-D’Angelo, J., & Crawford, L. (2019). Effects of technology in mathematics on achievement, motiva‑ tion, and attitude: A meta-analysis. Journal of Educational Computing Research, 57(2), 283–319. Higgins, K., Huscroft DAngelo, J., & Crawford, L. (2019). Effects of technology in mathematics on achieveme tion, and attitude: A meta-analysis. Journal of Educational Computing Research, 57(2), 283–319. Huchendorf, S. C. (1989). An inventory model of student time allocation: Quantifying the impact of student study time. Illinois State University. y Jenifer, J. References A d D., & Cariño, I. V. (2018). Visualizing student activity in blended learning classroom by mining course l d t I t ti l J l f L i d T hi htt //d i /10 18178/ijlt 4 1 1 6 Raga, R. C., Jr., Raga, J. D., & Cariño, I. V. (2018). Visualizing student activity in blended learning class log data. International Journal of Learning and Teaching. https://​doi.​org/​10.​18178/​ijlt.4.​1.1-6 Raga, R. C., Jr., Raga, J. D., & Cariño, I. V. (2018). Visualizing student activity in blended learning classroom by min log data. International Journal of Learning and Teaching. https://​doi.​org/​10.​18178/​ijlt.4.​1.1-6 Saint, J., Gašević, D., & Pardo, A. (2018). Detecting learning strategies through process mining. In E Technology Enhanced Learning (pp. 385–398). Springer. Saint, J., Gašević, D., & Pardo, A. (2018). Detecting learning strategies through process mining. In European Conference on Technology Enhanced Learning (pp. 385–398). Springer. gy g pp p g Schmeck, R. R. (1988). Individual differences and learning strategies. Learning and study strategies (pp. 171–191). Elsevier. https://​doi.​org/​10.​1016/​B978-0-​12-​742460-​6.​50016-5 p g Son, L. K., & Kornell, N. (2008). Research on the allocation of study time: Key studies from 1890 to the present (and beyond). In A handbook of memory and metamemory, (pp. 333–351). Son, L. K., & Kornell, N. (2008). Research on the allocation of study time: Key stu beyond). In A handbook of memory and metamemory, (pp. 333–351). y y y pp Tian, F., Zheng, Q., Gong, Z., Du, J., & Li, R. (2007). Personalized learning strategies in an intelligent e-learning environment. In 2007 11th International conference on computer supported cooperative work in design (pp. 973–978). IEEE. y y y pp Tian, F., Zheng, Q., Gong, Z., Du, J., & Li, R. (2007). Personalized learning strategies in an intelligent e-learning environment In 2007 11th International conference on computer supported cooperative work in design (pp. 973–978). IEEE.f Verschaffel, L., Depaepe, F., & Mevarech, Z. (2019). Learning Mathematics in metacognitively oriented ICT-Based learning environments: A systematic review of the literature. Education Research International, 2019, 1–19. https://​doi.​org/​10.​ 1155/​2019/​34020​35 Verschaffel, L., Depaepe, F., & Mevarech, Z. (2019). Learning Mathematics in metacognitively oriented ICT-Based learning environments: A systematic review of the literature. Education Research International, 2019, 1–19. https://​doi.​org/​10.​ 1155/​2019/​34020​35 Viberg, O., Khalil, M., & Baars, M. (2020). Self-regulated learning and learning analytics in online learning environments: A review of empirical research. In Proceedings of the tenth international conference on learning analytics & knowledge (pp. 524–533). References A d A., Yang, Y., & Ogata, H. (2021a). Analysis of self-directed learning ability, reading outcomes, and personalized planning behavior for self-directed extensive reading. Interactive Learning Environments. https://​ doi.​org/​10.​1080/​10494​820.​2021.​19376​60 Liborius, P., Bellhäuser, H., & Schmitz, B. (2019). What makes a good study day? An intraindividual study on un students’ time investment by means of time-series analyses. Learning and Instruction, 60, 310–321. y y Manso-Vázquez, M., Caeiro-Rodríguez, M., & Llamas-Nistal, M. (2016). Tracking and visualizing time management for self- l t d l I 2016 IEEE f ti i d ti f (FIE) ( 1 5) IEEE Manso-Vázquez, M., Caeiro-Rodríguez, M., & Llamas-Nistal, M. (2016). Tracking and visualizing regulated learners In 2016 IEEE frontiers in education conference (FIE) (pp 1 5) IEEE arners. In 2016 IEEE frontiers in education conference (FIE) (pp. 1–5). IE Nonis, S. A., & Hudson, G. I. (2010). Performance of college students: Impact of study time and study habits. Journal of Education for Business, 85(4), 229–238. Ogata, H., Majumdar, R., Akçapınar, G., Hasnine, M. N., & Flanagan, B. (2018). Beyond learning analytics: Framework for technology-enhanced evidence-based education and learning. In 26th international conference on computers in education workshop proceedings (pp. 493–496). Asia-Pacific Society for Computers in Education (APSCE). i y Ogata, H., Majumdar, R., Flanagan, B., & Kuromiya, H. (2022). Learning analytics and evidence-based K12 education in Japan: usage of data-driven services and mobile learning across two years. International Journal of Mobile Learning and Organisation. https://doi.org/10.1504/IJMLO.2023.10048714 g p g Ozer, O., & Yukselir, C. (2021). ‘Am I aware of my roles as a learner?’the relationships of learner autonomy, self-direction and goal commitment to academic achievement among Turkish EFL learners. Language Awareness, 1–20. Parra, B. J. (2016). Learning strategies and styles as a basis for building personal learning environments. International J l f Ed ti l T h l i Hi h Ed ti 13(1) 1 11 goal commitment to academic achievement among Turkish EFL learners. Language Awareness, 1–20. Parra, B. J. (2016). Learning strategies and styles as a basis for building personal learning environments. International g g y g p Journal of Educational Technology in Higher Education, 13(1), 1–11. Raga, R. C., Jr., Raga, J. D., & Cariño, I. V. (2018). Visualizing student activity in blended learning classroom by mining course l d I i l J l f L i d T hi h //d i /10 18178/ijl 4 1 1 6 Raga, R. C., Jr., Raga, J. Publisher’s Note Publisher s Note Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations. Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.
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Stereoscopic Rendering via Goggles Elicits Higher Functional Connectivity During Virtual Reality Gaming
Frontiers in human neuroscience
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Stereoscopic Rendering via Goggles Elicits Higher Functional Connectivity During Virtual Reality Gaming Caroline Garcia Forlim 1, Lukas Bittner 1, Fariba Mostajeran 2, Frank Steinicke 2, Jürgen Gallinat 1 and Simone Kühn 1,3* Caroline Garcia Forlim 1, Lukas Bittner 1, Fariba Mostajeran 2, Frank Steinicke 2, Jürgen Gallinat 1 and Simone Kühn 1,3* 1Department of Psychiatry and Psychotherapy, University Medical Center Hamburg-Eppendorf (UKE), Hamburg, Germany, 2Department of Human-Computer-Interaction, University of Hamburg, Hamburg, Germany, 3Max Planck Institute for Human Development, Lise-Meitner Group for Environmental Neuroscience, Berlin, Germany Virtual reality (VR) simulates real-world scenarios by creating a sense of presence in its users. Such immersive scenarios lead to behavior that is more similar to that displayed in real world settings, which may facilitate the transfer of knowledge and skills acquired in VR to similar real world situations. VR has already been used in education, psychotherapy, rehabilitation and it comes as an appealing choice for training intervention purposes. The aim of the present study was to investigate to what extent VR technology for games presented via goggles can be used in a magnetic resonance imaging scanner (MRI), addressing the question of whether brain connectivity differs between VR stimulation via goggles and a presentation from a screen via mirror projection. Moreover, we wanted to investigate whether stereoscopic goggle stimulation, where both eyes receive different visual input, would elicit stronger brain connectivity than a stimulation in which both eyes receive the same visual input (monoscopic). To our knowledge, there is no previous research using games and functional connectivity (FC) in MRI to address this question. Multiple analyses approaches were taken so that different aspects of brain connectivity could be covered: fractional low-frequency fluctuation, independent component analysis (ICA), seed-based FC (SeedFC) and graph analysis. In goggle presentation (mono and stereoscopic) as contrasted to screen, we found differences in brain activation in left cerebellum and postcentral gyrus as well as differences in connectivity in the visual cortex and frontal inferior cortex [when focusing on the visual and default mode network (DMN)]. When considering connectivity in specific areas of interest, we found higher connectivity between bilateral superior frontal cortex and the temporal lobe, as well as bilateral inferior parietal cortex with right calcarine and right lingual cortex. Furthermore, we found superior frontal cortex and insula/putamen to be more strongly connected in goggle stereoscopic vs. goggle monoscopic, in line with our hypothesis. Keywords: virtual reality, stereoscopic and monoscopic goggles, fMRI, seed-based functional connectivity, fractional amplitude of low-frequency fluctuations, resting-state networks, ICA, graph analysis Stereoscopic Rendering via Goggles Elicits Higher Functional Connectivity During Virtual Reality Gaming We assume that the condition that elicits higher brain connectivity values should be most suited for long-term brain training interventions given that, extended training under these conditions could permanently improve brain connectivity on a functional as well as on a structural level. Received: 12 July 2019 Accepted: 27 September 2019 Published: 25 October 2019 Received: 12 July 2019 Accepted: 27 September 2019 Published: 25 October 2019 Received: 12 July 2019 Accepted: 27 September 2019 Published: 25 October 2019 Citation: Forlim CG, Bittner L, Mostajeran F, Steinicke F, Gallinat J and Kühn S (2019) Stereoscopic Rendering via Goggles Elicits Higher Functional Connectivity During Virtual Reality Gaming. Front. Hum. Neurosci. 13:365. doi: 10.3389/fnhum.2019.00365 Edited by: Praveen Pilly, HRL Laboratories (United States), United States Reviewed by: Joseph Snider, University of California, San Diego, United States Jakub Limanowski, University College London, United Kingdom Reviewed by: Joseph Snider, University of California, San Diego, United States Jakub Limanowski, University College London, United Kingdom *Correspondence: Simone Kühn s.kuehn@uke.de Specialty section: This article was submitted to Brain Imaging and Stimulation, a section of the journal Frontiers in Human Neuroscience Specialty section: This article was submitted to Brain Imaging and Stimulation, a section of the journal Frontiers in Human Neuroscience ORIGINAL RESEARCH published: 25 October 2019 doi: 10.3389/fnhum.2019.00365 INTRODUCTION In preparation for such training studies using games and to test to what extent VR technology for games presented via goggles can be used in a magnetic resonance imaging scanner (MRI) we conducted the present study. We set out to investigate whether VR visual stimulation using MRI compatible goggles with 3D stereoscopic stimulation (in which the image is rendered separately for each eye creating the illusion of depth and 3D effect) differs in terms of brain connectivity from more commonly applied presentation forms using goggles with 2D monoscopic presentation (in which both eyes receive the same visual input) and a conventional screen back-projection via a mirror. Our hypothesis is that the condition that elicits higher brain connectivity values should be most suited for long-term brain training interventions given that, extended training under these conditions could permanently improve brain connectivity. To study potential brain connectivity differences elicited by 3D stereoscopic, 2D monoscopic and screen stimulations, we chose multiple methods, each of them being able to reveal different aspects of brain connectivity: independent component analysis (ICA) a data-driven technique to extract whole-brain networks, seed-based functional connectivity (SeedFC) that calculates the brain network related to specific regions of interest (ROIs) and graph analysis that characterizes the topology of the brain networks. Additionally, we tested brain activation in the domain of low-frequency fluctuation of the blood-oxygen-level dependent (BOLD) signal using fractional amplitude of low-frequency fluctuation (fALFF). To our knowledge, there is no previous research using games and FC in MRI to address this question. Most of the previous studies either used different stimulus material to investigate different degrees of spatial presence (Lee et al., 2005; Baumgartner et al., 2006, 2008; Havranek et al., 2012; Dores et al., 2013) and/or used electroencephalography (EEG; Baumgartner et al., 2006; Havranek et al., 2012; Kober et al., 2012; Slobounov et al., 2015; Dan and Reiner, 2017). Gaebler et al. (2014) employed the same movie as stimulus delivered in 3D stereoscopic and monoscopic 2D and evaluated the subject experience and intersubject correlation of brain activity finding higher immersion and a more realistic stimulus was associated with higher intersubject correlations. INTRODUCTION Virtual reality (VR) is used in various contexts such as entertainment, education, psychotherapy, rehabilitation and other conditions. In these computer-generated environments, the user can perceive, feel and interact in a manner that is similar to a physical place, which is usually achieved by a combination of multiple sensory channels, such as sight, sound and touch. An essential feature of VR is that it creates a sense of presence in its users, meaning a sense of being in a virtual environment that is more engaging than the surrounding world (Slater and Wilbur, 1997), which in turn leads to behavior that is more similar to the behavior displayed in real world settings. Importantly this feeling of presence may facilitate transfer of knowledge and skills acquired in VR to similar real-world situations, which would make VR an ideal choice for training intervention purposes. Most interesting for the present endeavor and the question whether VR elicits higher brain connectivity, is an EEG study that compared brain signals during navigation either on a desktop PC (2D) or on a large wall projection in 3D (Kober et al., 2012). The 3D condition was accompanied by higher cortical parietal activation in the alpha band, whereas the 2D condition was accompanied by stronger FC between frontal and parietal brain regions, indicating enhanced communication. In two additional EEG studies, in which different modes of presentation have been compared, but in which brain activity instead of connectivity was the focus of investigation, contradictory evidence has been gathered. Likewise in a navigation task comparing a condition in which participants wore 3D glasses and watched a screen vs. a 2D screen condition, higher theta power in frontal midline structures was observed in the 3D VR condition (Slobounov et al., 2015). In contrast, a study investigating paper folding (origami) learning with 3D glasses vs. with a 2D film showed that the 2D condition displays a higher so-called cognitive load index computed as the ratio of the average power of frontal theta and parietal alpha. A last study focused on intra- hippocampal EEG recordings comparing real-world navigation vs. VR navigation and demonstrated that oscillations typically occurs at a lower frequency in virtual as compared to real-world navigation (Bohbot et al., 2017). INTRODUCTION Brain regions that have repeatedly received attention in the endeavor to explain differences between VR-related presence experiences in comparison to 2D or less immersive environments are the prefrontal cortex (PFC), the parietal cortex as well as the hippocampus (Baumgartner et al., 2006, 2008; Beeli et al., 2008; Kober et al., 2012; Bohbot et al., 2017; Dan and Reiner, 2017). For this reason, we used whole-brain connectivity analysis approaches as well as ROI-based approaches focusing on the effects of the type of the display (conventional 2D screen, MRI goggles with monoscopic view effect, MRI goggles with stereoscopic view effect) which capture two different degrees of immersion in a technical (Slater and Wilbur, 1997) and subjective (Gaebler et al., 2014) point of view. Citation: Forlim CG, Bittner L, Mostajeran F, Steinicke F, Gallinat J and Kühn S (2019) Stereoscopic Rendering via Goggles Elicits Higher Functional Connectivity During Virtual Reality Gaming. Front. Hum. Neurosci. 13:365. doi: 10.3389/fnhum.2019.00365 October 2019 | Volume 13 | Article 365 Frontiers in Human Neuroscience | www.frontiersin.org 1 Higher FC in VR Stereoscopic Rendering Forlim et al. Nevertheless, the connectivity between brain areas was not investigated. Frontiers in Human Neuroscience | www.frontiersin.org Preprocessing To ensure for steady-state longitudinal magnetization, the first 10 images were discarded. Slice timing and realignment were performed in the remaining images. The individual anatomical images T1 were coregistered to functional images and segmented into white matter, gray matter, and cerebrospinal fluid. Data were then spatially normalized to Montreal Neurological Institute (MNI) space and spatially smoothed with an 8-mm FWHM to improve signal-to-noise ratio. Signal from white matter, cerebrospinal fluid and movement were regressed. To reduce physiological high-frequency respiratory and cardiac noise and low-frequency drift data was filtered in the bandwidth of (0.01–0.08 Hz) and, finally, detrended. All steps of data preprocessing were done using SPM12 (Wellcome Department of Cognitive Neurology) except filtering that was applied using REST toolbox (Song et al., 2011). In addition, to control for motion, the voxel-specific mean framewise displacement (FD) was calculated according to Power et al. (2012). We excluded from the analyses participants who had an FD above the recommended threshold of 0.5. Before entering the scanner, the participants were given information about the gameplay. The participants did not practice outside the scanner. They were asked to imagine to be a bee, whose goal is to make the landscape flourish by flying above it and touching flowers or trees which are surrounded by a bright halo. That would lead to pollen popping out of the flowers and new flowers, bushes or trees growing all around. They were told to follow the path of the flowers and collect as many flowers as possible, however, they were likewise instructed to not mind when missing out on a flower. The number of pollinated flowers was not counted and no score was kept. For this reason, no behavioral measures of the game were reported. Participants used an MR compatible button box with four buttons in a row from Nordic Neuro Lab to navigate in the game. The user had to hold the controller with both hands and use the two left buttons for flying upwards and downwards and the other two for flying to the left and right. Independently of how many flowers were pollinated, the speed of the flight was kept constant and each run lasted about 5 min. Game Description and Procedure Game Description and Procedure While situated in the scanner, participants were exposed to a game (FlowVR) that was inspired by the game Flower by Thatgame Company1 and programmed in Unity. The player flies through a nature scene with the goal of making the landscape blossom (Figure 1). This can be achieved by the player flying close to flowers, which are surrounded by a colored halo, to virtually pollinate them so that more flowers grow in the surrounding area. Visual and auditory elements associated with positive affect have been implemented. The task has been designed with the goal to reduce negative affect and initiate the experience of flow (Csikszentmihalyi, 2014). Fractional Amplitude of Low-Frequency Fluctuation (fALFF) Participants underwent three conditions, one in which the game was projected from a screen via mirror projection, one in which MRI compatible goggles were used either with a 3D stereoscopic stimulation (in which the image is rendered separately for each eye creating the illusion of depth and 3D effect) and a 2D monoscopic presentation (in which both eyes received the same visual input). MRI compatible goggles used were the VisuaStim digital2, with a resolution of 800 × 600 (SVGA) and field of view (FoV) of 30◦horizontal and 24◦ vertical. The order of the conditions was randomly assigned to the participants. Due to subject exclusion the order of condition, monoscopic-stereoscopic—screen were performed for three subjects instead of four (23 subjects distributed among six orders of condition). ( ) fALFF is not a measure of connectivity between areas, but rather it accounts, voxel-wisely, for changes in the amplitude of low frequency spontaneous fluctuations in the BOLD imaging signal in the whole brain. fALFF represents the relative contribution of low frequency oscillations to the total detectable frequency range and is calculated taking the power within a frequency range and dividing it by the total power in the whole detectable frequency range (Zou et al., 2008). For that, first the voxel time series are transformed into the power domain, then the amplitudes within a specific low-frequency bandwidth are summed. Finally, this value is divided by the sum of the amplitudes in the entire detectable frequency range. To create standardized maps, each subject maps is transformed into Z-scores. We calculated the fALFF using REST toolbox (Song et al., 2011). Subject-specific fALFF maps were taken to the second level analysis in SPM12. 1http://thatgamecompany.com/flower/ 2http://www.mrivideo.com/visuastimdigital.php Participants p Twenty-six healthy participants were recruited from a local participant pool. After complete description of the study, the participants’ informed written consent was obtained. Exclusion criteria for all participants were abnormalities in MRI, relevant general medical disorders and neurological diseases. Additional exclusion criteria were movement above the threshold of 0.5 (Power et al., 2012) during the scanning section and completion of all three conditions. After the exclusion criteria were applied, the number of subjects dropped to 23 (mean age = 26.5, SD = 4.8 years, female:male = 11:12). The protocol was approved by the local psychological ethics committee of the University Medical Center Hamburg-Eppendorf, Germany. All subjects gave written informed consent in accordance with the Declaration of Helsinki. October 2019 | Volume 13 | Article 365 Frontiers in Human Neuroscience | www.frontiersin.org 2 Higher FC in VR Stereoscopic Rendering Forlim et al. voxel size). Resting-state data were acquired after the T1 image. We acquired whole-brain functional images while participants were asked to keep their eyes closed and relax for 5 min. We used a T2∗-weighted echo-planar imaging (EPI) sequence (repetition time = 2,000 ms, echo time = 30 ms, image matrix = 64 × 64, field of view = 216 mm, flip angle = 80◦, slice thickness = 3.0 mm, distance factor = 20%, voxel size = 3 × 3 × 3 mm2, 36 axial slices, using GRAPPA). Images were aligned to the anterior-posterior commissure line. Scanning Procedure Structural images were collected on a Siemens Prisma 3T scanner (Erlangen, Germany) and a standard 32-channel head coil was used. The structural images were obtained using a three-dimensional T1-weighted magnetization prepared gradient-echo sequence (MPRAGE; repetition time = 2,500 ms; echo time = 2.12 ms; TI = 1,100 ms, acquisition matrix = 240 × 241 × 194, flip angle = 9◦; 0.8 × 0.8 × 0.94 mm Independent Component Analysis (ICA) ICA a data-driven technique to extract whole-brain networks. We examined the resting-state networks given by the spatial grouping of voxels with temporally coherent activity calculated in a data-driven fashion using ICA. ICA decomposes blindly, in multiple independent components, the brain activity. Each component is a spatial grouping of voxels with temporally coherent activity (connectivity) and according to this spatial October 2019 | Volume 13 | Article 365 Frontiers in Human Neuroscience | www.frontiersin.org 3 Forlim et al. Higher FC in VR Stereoscopic Rendering FIGURE 1 | A screenshot of the player’s view when flying in the virtual landscape. The colorful halos indicate the positions of the next flowers to be “pollinated.” FIGURE 1 | A screenshot of the player’s view when flying in the virtual landscape. The colorful halos indicate the positions of the next flowers to be “pollinated.” using the anatomical automatic labeling atlas (AAL). Seed-based connectivity maps were obtained by correlating the seed time series with all voxels in the brain. For that, first we extracted the time series of all voxels within the corresponding ROI delimitated by the AAL atlas and then we took the average. Next, we calculated the Pearson’s correlation coefficient between the seed time series and all other voxels in the brain. Finally, Fischer transformation was applied to the individual FC maps obtaining Z scores to improve normality. The individual seedFC maps were calculated in MATLAB R2012b4. The Z score maps were taken to the second level in SPM 12 (Statistical Parametric Mapping package; Wellcome Department for Imaging Neuroscience, London, United Kingdom5. grouping of voxels, the components are associated with sources that can be either related to brain activity or to noise such as movement, blinking, breathing, and heartbeat. The main brain activity-related sources resemble discrete cortical functional networks and are named resting state networks (RSN). The RSN comprise the default mode network (DMN), basal ganglia, auditory, visuospatial, sensory-motor, salience, executive control, language and visual networks. Scanning Procedure Here, ICA was performed in GIFT software3 using Infomax algorithm. The number of spatially independent resting-state networks (N) was estimated by the GIFT software (N = 26). The identification of the networks was done automatically using predefined GIFT templates and later the resting-state networks of interested, the DMN and visual networks, were chosen by two specialists (CGF and SK). For every resting-network of interest, subject-specific spatial connectivity maps were taken to the second level analysis in SPM12. 3http://icatb.sourceforge.net/ 4https://www.mathworks.com/ 5http://www.fil.ion.ucl.ac.uk/spm Graph Analysis To examine differences in the topology of the brain networks we performed graph analysis (Bullmore and Sporns, 2009). The first step was to construct the FC matrices, where nodes and links should be defined. Nodes were brain regions created based on the AAL116 atlas (Tzourio-Mazoyer et al., 2002) and the links were the connectivity strength between nodes calculated using Pearson’s correlation coefficient. The node-averaged time series used to infer the connectivity strength were extracted for each subject using the REST toolbox (Song et al., 2011). To avoid false-positive links, connectivity values that were not statistically significant (p-value ≥0.05) were excluded. Once the functional matrices are built, graph analysis can be applied in order to characterize their topology. At this stage, thresholding was applied, namely density threshold ranging from 0.1 to 0.8 in steps of 0.1. Thresholding means that only links with the highest connectivity strengths are kept until the desired Statistics We were interested in two particular contrasts: (1) VR visual stimulation using MRI compatible goggles with 3D stereoscopic stimulation and 2D monoscopic presentation vs. screen via mirror projection, to investigate for brain differences during goggles and screen; and (2) 3D stereoscopic stimulation, in which the image is rendered separately for each eye creating the illusion of depth and 3D effect vs. 2D monoscopic presentation, most commonly applied presentation in which both eyes receive the same visual input, so that we could investigate the effect of stereoscopic view in the brain. The resulting individual maps of each analysis were taken to the second level analysis in SPM12 (Statistical Parametric Mapping package; Wellcome Department for Imaging Neuroscience, London, United Kingdom6) with mean FD as covariate. Using a family wise error (FWE) threshold on the cluster level of p < 0.05 (cluster extent = 50) we ran the two contrasts in both the positive and the negative direction. For the graph analysis, repeated measures one-way ANOVA was used. FDR was used for multiple comparison correction. 6http://www.fil.ion.ucl.ac.uk/spm Seed-Based Functional Connectivity (SeedFC) Seed-Based Functional Connectivity (SeedFC) FC is one of the most popular methods to infer connectivity in neuroimaging. When FC is calculated by means of the temporal correlations (Pearson’s correlation) between a ROI to the other voxels in the whole brain, it is known as seed-based FC (SeedFC). In this way, SeedFC calculates the brain network related to specific ROIs. We investigated the seed-based connectivity maps, using as seed the brain ROIs in VR, namely, bilateral superior and middle frontal cortex, bilateral hippocampus, bilateral superior and inferior parietal cortex, areas shown in previous works that may explain differences between VR-related presence experiences and less immersive environments (Baumgartner et al., 2006, 2008; Beeli et al., 2008; Kober et al., 2012; Bohbot et al., 2017; Dan and Reiner, 2017). The seed areas were defined October 2019 | Volume 13 | Article 365 Frontiers in Human Neuroscience | www.frontiersin.org 4 Higher FC in VR Stereoscopic Rendering Forlim et al. density is reached, e.g., a threshold of 0.1 means 10% of the links with the highest connectivity were kept and the remaining ones were set to 0. Graph analysis was then applied to these thresholded matrices using the Brain Connectivity toolbox (brain-connectivity-toolbox.net). The main graph measures were chosen: betweenness centrality that measures the fraction of all shortest paths that pass through an individual node; characteristic path length which accounts for the average shortest path between all pairs of nodes; efficiency which is the average inverse shortest paths and transitivity that measures the relative number of triangles in the graph, compared to total number of connected triples of nodes. For a complete description of the graph measures please refer to Bullmore and Sporns (2009) and Rubinov and Sporns (2010). TABLE 1 | Group differences in fractional amplitude of low-frequency fluctuation (fALFF), independent component analysis (ICA) and seed-based functional connectivity (Seed-FC) analyses. Seed-Based Functional Connectivity (SeedFC) Analysis Contrast Labels MNI coordinates T Cluster size (in voxels) P (cluster level FWE corrected) fALFF goggles > screen Left cerebellum VI −20 −62 −26 4.32 92 0.007 Left postcentral gyrus −42 −40 60 4.05 93 0.007 goggles < screen Right frontal superior orbital 18 56 −4 6.13 72 0.006 ICA Primary visual goggles < screen Bilateral cuneus 6 −80 30 6.25 365 <<0.001 Left middle occipital −18 −98 −2 4.94 108 0.025 goggles > screen Left calcarine −8 −94 10 4.6 152 0.018 ICA Higher visual goggles < screen Bilateral cuneus 0 −78 24 4.7 232 0.001 goggles > screen Left lingual −4 −64 4 6.2 257 <<0.001 ICA goggles > screen Bilateral lingual −2 −66 0 5.1 192 0.003 DMN Inferior frontal gyrus/precentral gyrus −34 0 28 5.0 324 <<0.001 SeedFC goggles > screen Left superior temporal pole −48 16 −12 4.7 332 <<0.001 Bilateral superior frontal stereoscopic > monoscopic Left insula/putamen −34 10 10 5.4 237 <<0.001 SeedFC Bilateral inferior parietal goggles > screen Right calcarine 18 −98 4 4.5 182 0.002 Bilateral inferior parietal Right lingual 26 −88 −6 Right calcarine 20 −88 2 RESULTS Since we were mostly interested in the direction of potential brain connectivity differences between conditions, we employed multiple different analysis pipelines. We employed four methods that focus on different aspects of the brain signal, the intrinsic frequency fluctuation and the connectivity given by the spatial grouping of voxels with temporally coherent activity and by the temporal correlations between areas, respectively, fALFF that measures the amplitude of the low frequency fluctuation of the BOLD signal, ICA that uncovers the resting-state brain networks, the seed-based FC that calculates the brain network related to specific ROIs and graph analysis that characterizes the topology of the brain networks. Results are summarized in Table 1. October 2019 | Volume 13 | Article 365 fALFF In fALFF, we found significantly higher fALFF (Figure 2) in left cerebellum (VI, −20, −62, −26), left postcentral gyrus October 2019 | Volume 13 | Article 365 Frontiers in Human Neuroscience | www.frontiersin.org 5 Forlim et al. Higher FC in VR Stereoscopic Rendering FIGURE 2 | 1—Difference of the mean fALFF maps, 1A goggles > screen and 1B goggles < screen. 2—Group differences in fALFF. Higher fALFF (in red) in left cerebellum and left postcentral gyrus in the goggles (monoscopic + stereoscopic) condition compared with the screen condition. In the reverse contrast (in blue) there was higher fALFF in right superior orbital frontal cortex. FIGURE 2 | 1—Difference of the mean fALFF maps, 1A goggles > screen and 1B goggles < screen. 2—Group differences in fALFF. Higher fALFF (in red) in left cerebellum and left postcentral gyrus in the goggles (monoscopic + stereoscopic) condition compared with the screen condition. In the reverse contrast (in blue) there was higher fALFF in right superior orbital frontal cortex. FIGURE 2 | 1—Difference of the mean fALFF maps, 1A goggles > screen and 1B goggles < screen. 2—Group differences in fALFF. Higher fALFF (in red) in left cerebellum and left postcentral gyrus in the goggles (monoscopic + stereoscopic) condition compared with the screen condition. In the reverse contrast (in blue) there was higher fALFF in right superior orbital frontal cortex. more strongly correlated to the signal of the source identified, respectively, as primary and higher visual network. A decrease in connectivity was observed in the left middle occipital (6, −90, 30) in the primary visual network and in the bilateral cuneus (0, −78, 24) in the higher visual one, which means, when using goggles, the grouping of voxels in left middle occipital and in the bilateral cuneus were less correlated to the signal of the sources identified, respectively, as primary visual and higher visual network. Investigating the DMN (Figure 3), we found an increase in the connectivity in the inferior frontal (−34, 0, 28) and bilateral lingual (−2, −66, 0) for goggles (monoscopic + stereoscopic) as compared to screen (−42, −40 60) in the goggles (monoscopic + stereoscopic) condition compared with the screen condition. In the reverse contrast, we observed higher fALFF in right superior orbital frontal cortex (−18, 56, −4; all results FWE corrected p < 0.05). ICA In the visual networks (Figure 3), we found increased connectivity in the primary and higher networks in the left calcarine (−8, −94, 10) and left lingual (−4, −64, 4), respectively, in the goggles (monoscopic + stereoscopic) as compared to screen condition, that is, when using goggles, the grouping of voxels in left calcarine and left lingual were October 2019 | Volume 13 | Article 365 Frontiers in Human Neuroscience | www.frontiersin.org 6 Forlim et al. Higher FC in VR Stereoscopic Rendering FIGURE 3 | Network spatial maps and group differences: default mode network (DMN) and visual. In the primary visual network, there was an increase in connectivity (in red) in the left calcarine and in the higher visual network in the left lingual in the goggles (monoscopic + stereoscopic) condition as compared to the screen condition. A decreased in connectivity (in blue) was seen in the left middle occipital in the primary visual network and in the bilateral cuneus in the higher visual network. In the DMN, we found an increase (in yellow) in the connectivity in the inferior frontal and bilateral lingual for goggles (monoscopic + stereoscopic) as compared to screen condition. condition, meaning stronger correlation of these areas and the signal of the source identified as DMN. No significant difference between the contrast monoscopic vs. stereoscopic was found in the visual networks nor in the DMN. FDR was used to account for multiple comparison correction due to multiple networks. FIGURE 3 | Network spatial maps and group differences: default mode network (DMN) and visual. In the primary visual network, there was an increase in connectivity (in red) in the left calcarine and in the higher visual network in the left lingual in the goggles (monoscopic + stereoscopic) condition as compared to the screen condition. A decreased in connectivity (in blue) was seen in the left middle occipital in the primary visual network and in the bilateral cuneus in the higher visual network. In the DMN, we found an increase (in yellow) in the connectivity in the inferior frontal and bilateral lingual for goggles (monoscopic + stereoscopic) as compared to screen condition. FIGURE 3 | Network spatial maps and group differences: default mode network (DMN) and visual. SeedFC characteristic path length. Betweenness is a measure, of centrality, transitivity of segregation and characteristic path length a measure of integration. This means that for networks formed by the highest connectivity links during VR, local information processing (transitivity) was higher, whereas, at the same time, the global exchange of information (characteristic path length) in the brain was also increased. In addition, a higher mean betweenness revealed more central nodes in the network. The local efficiency of the network was also higher during VR as compared to screen, when considering the 30% highest connectivity values as nodes. These results reported above were not corrected for multiple comparisons. No significant differences were found after correcting for multiple comparisons. In a ROI-based seed analysis, we used the following ROIs: bilateral superior frontal cortex, middle frontal cortex, hippocampus, superior parietal cortex, inferior parietal cortex. We found significant seed-based connectivity (Figure 4) between bilateral superior frontal cortex and the left superior temporal lobe (−48, 16, −12) for the MRI goggle contrast goggles (monoscopic + stereoscopic) > screen and to left insula and putamen (−34, 10, 10) in the stereoscopic view contrast (stereoscopic > monoscopic; Figure 4). The bilateral inferior parietal cortex was more strongly connected to right calcarine cortex (18, −98, 4; 20, −88, 2) and right lingual cortex (26, −88, −6) in the goggles vs. screen condition (Figure 5). All seed-based ROI analysis results were FWE corrected at p < 0.05. To account for multiple comparison correction due to multiple seeds, FDR was used. ICA There was stronger connectivity between a seed in the bilateral superior frontal cortex and the left superior temporal lobe for the magnetic resonance imaging (MRI) goggle contrast goggles (monoscopic + stereoscopic) as compared to the screen. (B) Right—Group differences in stereoscopic vs. monoscopic condition. The stereoscopic view elicited stronger connectivity between the bilateral frontal cortex and left insula and putamen. FIGURE 4 | (A) Mean seed-based functional connectivity (SeedFC) maps per condition, seed located in the bilateral frontal superior cortex. (B) Left—Group differences in SeedFC in goggles vs. screen condition. There was stronger connectivity between a seed in the bilateral superior frontal cortex and the left superior temporal lobe for the magnetic resonance imaging (MRI) goggle contrast goggles (monoscopic + stereoscopic) as compared to the screen. (B) Right—Group differences in stereoscopic vs. monoscopic condition. The stereoscopic view elicited stronger connectivity between the bilateral frontal cortex and left insula and putamen. ICA In the primary visual network, there was an increase in connectivity (in red) in the left calcarine and in the higher visual network in the left lingual in the goggles (monoscopic + stereoscopic) condition as compared to the screen condition. A decreased in connectivity (in blue) was seen in the left middle occipital in the primary visual network and in the bilateral cuneus in the higher visual network. In the DMN, we found an increase (in yellow) in the connectivity in the inferior frontal and bilateral lingual for goggles (monoscopic + stereoscopic) as compared to screen condition. condition, meaning stronger correlation of these areas and the signal of the source identified as DMN. No significant difference between the contrast monoscopic vs. stereoscopic was found in the visual networks nor in the DMN. FDR was used to account for multiple comparison correction due to multiple networks. October 2019 | Volume 13 | Article 365 Frontiers in Human Neuroscience | www.frontiersin.org 7 Forlim et al. Higher FC in VR Stereoscopic Rendering FIGURE 4 | (A) Mean seed-based functional connectivity (SeedFC) maps per condition, seed located in the bilateral frontal superior cortex. (B) Left—Group differences in SeedFC in goggles vs. screen condition. There was stronger connectivity between a seed in the bilateral superior frontal cortex and the left superior temporal lobe for the magnetic resonance imaging (MRI) goggle contrast goggles (monoscopic + stereoscopic) as compared to the screen. (B) Right—Group differences in stereoscopic vs. monoscopic condition. The stereoscopic view elicited stronger connectivity between the bilateral frontal cortex and left insula and putamen. FIGURE 4 | (A) Mean seed-based functional connectivity (SeedFC) maps per condition, seed located in the bilateral frontal superior cortex. (B) Left—Group differences in SeedFC in goggles vs. screen condition. There was stronger connectivity between a seed in the bilateral superior frontal cortex and the left superior temporal lobe for the magnetic resonance imaging (MRI) goggle contrast goggles (monoscopic + stereoscopic) as compared to the screen. (B) Right—Group differences in stereoscopic vs. monoscopic condition. The stereoscopic view elicited stronger connectivity between the bilateral frontal cortex and left insula and putamen. FIGURE 4 | (A) Mean seed-based functional connectivity (SeedFC) maps per condition, seed located in the bilateral frontal superior cortex. (B) Left—Group differences in SeedFC in goggles vs. screen condition. Graph Analysis Within the scope of the present study, we set out to unravel the effects of VR stimulation presented via goggles on functional brain connectivity in MRI. In order to do so we used a virtual game in which the player had the task to fly through a natural scene with the goal to make the landscape blossom, which was Despite no topological differences consistent across threshold were found (Figure 6), the threshold 0.1 representing 10% of the highest connections, goggles condition presented higher mean betweenness than screen, as well as transitivity and October 2019 | Volume 13 | Article 365 Frontiers in Human Neuroscience | www.frontiersin.org 8 Forlim et al. Higher FC in VR Stereoscopic Rendering FIGURE 5 | (A) Mean seed-based functional connectivity (SeedFC) maps per condition, seed located in the bilateral inferior parietal cortex. (B) Group differences in SeedFC in goggles vs. screen condition. There was stronger connectivity between a seed in the bilateral parietal inferior cortex to right calcarine cortex and to right lingual cortex for the MRI goggle contrast goggles (monoscopic + stereoscopic) as compared to the screen. FIGURE 5 | (A) Mean seed-based functional connectivity (SeedFC) maps per condition, seed located in the bilateral inferior parietal cortex. (B) Group differences in SeedFC in goggles vs. screen condition. There was stronger connectivity between a seed in the bilateral parietal inferior cortex to right calcarine cortex and to right lingual cortex for the MRI goggle contrast goggles (monoscopic + stereoscopic) as compared to the screen. In line with our hypothesis, the goggles and the stereoscopic contrast revealed stronger brain connectivity for the respective condition with more immersion in the technical (Slater and Wilbur, 1997) and subjective (Gaebler et al., 2014) point of view, that is goggles (stereoscopic and monoscopic) compared to screen and stereoscopic compared to monoscopic generally elicited higher brain connectivity. We found higher fALFF in left cerebellum and postcentral gyrus for goggles compared to the screen. In the visual networks, we found an increase in connectivity in the left calcarine and left lingual for the same contrast, meaning higher correlation of the grouping of voxels in these areas to the signal associated with visual networks and in the DMN there was increased connectivity in the inferior frontal cortex and bilateral lingual gyrus, which means lower correlation of these areas and the signal associated with the DMN activity. Graph Analysis Additionally, in the seed-based analysis, we found higher connectivity between bilateral superior frontal cortex and the temporal lobe, as well as bilateral inferior parietal cortex with right calcarine and right lingual cortex for the two goggle vs. screen conditions. Furthermore, we found superior frontal cortex and insula/putamen to be more strongly connected in stereoscopic vs. monoscopic view. When looking at the screen condition, we found higher brain designed with the goal to decrease negative affect and induce the experience of flow in its players. To disentangle the effects of presenting the visual stimuli via MRI-compatible goggles, we compared the goggle stereoscopic and monoscopic condition with the screen condition. We considered that the goggles, which are mounted on the user’s head and have the ability to display stereoscopic images, are objectively more immersive than a back-projection of a Screen via a mirror system (Slater and Wilbur, 1997) and therefore can elicit the sense of presence (Gaebler et al., 2014). As in the back-projection of a screen, the participant receives only 2D images and can still see the scanner bore and oftentimes even the staff operating the scanner next to the presented stimuli. In order to investigate differences in functional brain connectivity during gaming induced by the stereoscopic view, namely the fact that the image is rendered separately for each eye creating the illusion of depth and 3D effect, we contrasted the stereoscopic and monoscopic condition directly. With the goal to obtain a comprehensive picture of brain connectivity we chose four common approaches to analyze resting state fMRI data, namely the assessment of the amplitude of low frequency fluctuation (fALFF; Zou et al., 2008), ICA (Calhoun et al., 2001), seed-based FC analysis and graph analysis (Bullmore and Sporns, 2009). designed with the goal to decrease negative affect and induce the experience of flow in its players. To disentangle the effects of presenting the visual stimuli via MRI-compatible goggles, we compared the goggle stereoscopic and monoscopic condition with the screen condition. We considered that the goggles, which are mounted on the user’s head and have the ability to display stereoscopic images, are objectively more immersive than a back-projection of a Screen via a mirror system (Slater and Wilbur, 1997) and therefore can elicit the sense of presence (Gaebler et al., 2014). Frontiers in Human Neuroscience | www.frontiersin.org Graph Analysis As in the back-projection of a screen, the participant receives only 2D images and can still see the scanner bore and oftentimes even the staff operating the scanner next to the presented stimuli. In order to investigate differences in functional brain connectivity during gaming induced by the stereoscopic view, namely the fact that the image is rendered separately for each eye creating the illusion of depth and 3D effect, we contrasted the stereoscopic and monoscopic condition directly. With the goal to obtain a comprehensive picture of brain connectivity we chose four common approaches to analyze resting state fMRI data, namely the assessment of the amplitude of low frequency fluctuation (fALFF; Zou et al., 2008), ICA (Calhoun et al., 2001), seed-based FC analysis and graph analysis (Bullmore and Sporns, 2009). October 2019 | Volume 13 | Article 365 Frontiers in Human Neuroscience | www.frontiersin.org Frontiers in Human Neuroscience | www.frontiersin.org 9 Forlim et al. Higher FC in VR Stereoscopic Rendering FIGURE 6 | Graph analysis. Betweenneess, transitivity, global efficiency, local efficiency and characteristic path length were calculated. ∗Means group differences before multiple comparison correction (p < 0.05 uncorrected). Group differences were not significant after multiple comparison correction. obal efficiency, local efficiency and characteristic path length were calculated. ∗Means group differences ed). Group differences were not significant after multiple comparison correction. FIGURE 6 | Graph analysis. Betweenneess, transitivity, global efficiency, local efficiency and characteristic path length were calc before multiple comparison correction (p < 0.05 uncorrected). Group differences were not significant after multiple comparison c tweenneess, transitivity, global efficiency, local efficiency and characteristic path length were calculated. ∗Means group differences ection (p < 0.05 uncorrected). Group differences were not significant after multiple comparison correction. FIGURE 6 | Graph analysis. Betweenneess, transitivity, global efficiency, local efficiency and characteristic path length were calculated. ∗Means group differences before multiple comparison correction (p < 0.05 uncorrected). Group differences were not significant after multiple comparison correction. activity, that is higher fALFF values, in right superior orbital frontal cortex. (Baumgartner et al., 2008) in adults. Moreover, when focusing on connectivity between brain areas, the authors report the results of an effective connectivity analysis from which they conclude that the right DLPFC is involved in down-regulating the activation in the dorsal visual processing stream. Graph Analysis Furthermore, the authors interpret the observed increase of activity in the dorsal visual stream during present experience as a sign of These results can be viewed as in line with the hypothesis proposed by Jäncke et al. (2009) stating that PFC is involved in the experience of presence. In particular bilateral dorsolateral PFC (DLPFC) activity was shown to be negatively correlated with the subjective report of the experience of presence October 2019 | Volume 13 | Article 365 Frontiers in Human Neuroscience | www.frontiersin.org 10 Higher FC in VR Stereoscopic Rendering Forlim et al. higher action preparation in the VR because the brain responds to it similarly as in real-life situations (Jäncke et al., 2009). However, on the same dataset, the left DLPFC was shown to be positively connected to brain regions that are part of the default-mode network (such as medial PFC, anterior cingulate cortex, thalamus, brain stem, nucleus caudatus and parahippocampus). Due to the involvement of the latter brain regions in self-referential processing the interpretation is that higher left DLPFC activation when participants experience less presence leads to an up-regulation of self-referential processing which reflects the detachment from the VR experience. on a functional as well as a structural level. Our results show that the majority of contrasts and FC indicators resulting from different analysis pipelines reveal higher brain connectivity between brain regions in the goggle condition and the stereoscopic condition in particular, which we interpret as a hint that training in VR environments in contrast to environments displayed on a screen may be superior in eliciting and therewith facilitating brain connectivity in intervention studies. At present, a major drawback of the implementation of VR in an MRI environment is the fact that the VR experience is limited to the stereoscopic input to the eyes without the experience of movement in space. Usually, the stereoscopic view in VR is accompanied by the fact that individuals can freely turn their head and move in space while the visual input is adapted to the individual’s movements. However, since the head cannot be freely moved in the MRI scanner, due to its resulting movement artifacts in the images, the actual differences in brain connectivity between a VR and a screen presentation of an environment might be underestimated. Graph Analysis Future research may attempt to use motion tracking systems to enable this movement related visual feedback, while at the same time correct for the occurring motion artifacts in the acquired MRI images (Stucht et al., 2015). The limited field of view and resolution of the MRI compatible goggles introduces yet another limitation to such studies. As it can affect the level of immersion for both monoscopic and stereoscopic conditions. Specifically, to the design of the present study, the question still remains of whether and how frequently the participants noticed the 3D effect when, for example, the bee was not flying close enough to the virtual objects. In contrast to previous studies, in which the focus was on the subjective feeling of presence and brain activity, we set out to investigate differences in brain connectivity between objectively different conditions of stimulation during gaming. A major disadvantage of the previous design, with exception of one (Gaebler et al., 2014), was that the stimulation used to elicit different degrees of presence was not the same. In addition, in all of them, the participants were only passively watching the displays. For this reason, we confronted participants with the same interactive VR game in all three conditions with the only difference being the hardware presentation procedures used to display the respective environment. y Our results can be viewed as being in line with the findings and interpretations shown in association to perceived experience of presence (Baumgartner et al., 2008; Jäncke et al., 2009), since we also find more fALFF in right superior orbital frontal cortex in the 2D screen condition compared to the two goggle conditions. Next to these previous fMRI results our results can also be perceived as in line with results from an EEG study in which the same spatial navigation task in a virtual maze was compared between a projections onto a large wall which was supposedly more immersive than a display on a small Desktop PC screen (Kober et al., 2012). The authors report stronger FC between frontal and parietal brain regions in the Desktop display condition. When it comes to comparing only stereoscopic and monoscopic condition, our results differ from Gaebler et al. (2014) in terms of brain areas. ETHICS STATEMENT The studies involving human participants were reviewed and approved by the local psychological ethics committee of the University Medical Center Hamburg-Eppendorf, Germany. The patients/participants provided their written informed consent to participate in this study. However, the rationale for the present study was slightly different from the studies presented before. We set out to test whether overall the stereoscopic VR presentation elicits higher degrees of functional brain connectivity than monoscopic and a screen display. Graph Analysis This fact cannot be seen as a surprise considering that they investigated areas that showed common brain activity across subjects by means of the intersubject correlations, which were the temporal lobe, right inferior occipital cortex and right precuneus, whereas we focused on the connectivity between brain areas. Interestingly, the direction of the contrast where differences were found was the same in Gaebler et al. (2014) and in the present study: stereoscopic > monoscopic, meaning that stereoscopic elicited higher intersubject correlations as well as higher connectivity as compared to monoscopic. DATA AVAILABILITY STATEMENT The datasets for this manuscript are not publicly available because: it was not part of our ethics statement and therefore the participants were not informed on the fact that the data would be made public. However, the data can be obtained upon request. Requests to access the datasets should be directed to Prof. Dr. SK, s.kuehn@uke.de. The data analysis pipelines are fully available upon request. Frontiers in Human Neuroscience | www.frontiersin.org REFERENCES Lee, J. H., Lim, Y., Wiederhold, B. K., and Graham, S. J. (2005). A functional magnetic resonance imaging (FMRI) study of cue-induced smoking craving in virtual environments. Appl. Psychophysiol. Biofeedback 30, 195–204. doi: 10.1007/s10484-005-6377-z Baumgartner, T., Speck, D., Wettstein, D., Masnari, O., Beeli, G., and Jäncke, L. (2008). Feeling present in arousing virtual reality worlds: prefrontal brain regions differentially orchestrate presence experience in adults and children. Front. Hum. Neurosci. 2:8. doi: 10.3389/neuro.09.008.2008 Power, J. D., Barnes, K. A., Snyder, A. Z., Schlaggar, B. L., and Petersen, S. E. (2012). Spurious but systematic correlations in functional connectivity MRI networks arise from subject motion. Neuroimage 59, 2142–2154. doi: 10.1016/j. neuroimage.2011.10.018 Front. Hum. Neurosci. 2:8. doi: 10.3389/neuro.09.008.2008 Baumgartner, T., Valko, L., Esslen, M., and Jäncke, L. (2006). Neural correlate of spatial presence in an arousing and noninteractive virtual reality: an EEG and psychophysiology study. Cyberpsychol. Behav. 9, 30–45. doi: 10.1089/cpb. 2006.9.30 Rubinov, M., and Sporns, O. (2010). Complex network measures of brain connectivity: uses and interpretations. Neuroimage 52, 1059–1069. doi: 10.1016/j.neuroimage.2009.10.003 Beeli, G., Casutt, G., Baumgartner, T., and Jäncke, L. (2008). Modulating presence and impulsiveness by external stimulation of the brain. Behav. Brain Funct. 4:33. doi: 10.1186/1744-9081-4-33 Slater, M., and Wilbur, S. (1997). A framework for immersive virtual environments (FIVE): speculations on the role of presence in virtual environments. Presence Teleoper. Virtual Environ. 6, 603–616. doi: 10.1162/pres.1997. 6.6.603 Bohbot, V. D., Copara, M. S., Gotman, J., and Ekstrom, A. D. (2017). Low- frequency theta oscillations in the human hippocampus during real-world and virtual navigation. Nat. Commun. 8:14415. doi: 10.1038/ncomms14415 Slobounov, S. M., Ray, W., Johnson, B., Slobounov, E., and Newell, K. M. (2015). Modulation of cortical activity in 2D versus 3D virtual reality environments: an EEG study. Int. J. Psychophysiol. 95, 254–260. doi: 10.1016/j.ijpsycho.2014. 11.003 Bullmore, E., and Sporns, O. (2009). Complex brain networks: graph theoretical analysis of structural and functional systems. Nat. Rev. Neurosci. 10, 186–198. doi: 10.1038/nrn2575 Calhoun, V. D., Adali, T., Pearlson, G. D., and Pekar, J. J. (2001). A method for making group inferences from functional MRI data using independent component analysis. Hum. Brain Mapp. 14, 140–151. doi: 10.1002/ hbm.1048 Song, X. W., Dong, Z. Y., Long, X. Y., Li, S. F., Zuo, X. N., Zhu, C. Z., et al. (2011). REST: a toolkit for resting-state functional magnetic resonance imaging data processing. PLoS One 6:e25031. doi: 10.1371/journal.pone.0025031 Stucht, D., Danishad, K. REFERENCES A., Schulze, P., Godenschweger, F., Zaitsev, M., and Speck, O. (2015). Highest resolution in vivo human brain MRI using prospective motion correction. PLoS One 10:e0133921. doi: 10.1371/journal. pone.0133921 Csikszentmihalyi, M. (2014). Flow and The Foundations of Positive Psychology. Dordrecht: Springer. Dan, A., and Reiner, M. (2017). EEG-based cognitive load of processing events in 3D virtual worlds is lower than processing events in 2D displays. Int. J. Psychophysiol. 122, 75–84. doi: 10.1016/j.ijpsycho.2016.08.013 Tzourio-Mazoyer, N., Landeau, B., Papathanassiou, D., Crivello, F., Etard, O., Delcroix, N., et al. (2002). Automated anatomical labeling of activations in SPM using a macroscopic anatomical parcellation of the MNI MRI single-subject brain. Neuroimage 15, 273–289. doi: 10.1006/nimg.2001.0978 Dores, A. R., Almeida, I., Barbosa, F., Castelo-Branco, M., Monteiro, L., Reis, M., et al. (2013). Effects of emotional valence and three-dimensionality of visual stimuli on brain activation: an fMRI study. NeuroRehabilitation 33, 505–512. doi: 10.3233/NRE-130987 Zou, Q. H., Zhu, C. Z., Yang, Y., Zuo, X. N., Long, X. Y., Cao, Q. J., et al. (2008). An improved approach to detection of amplitude of low-frequency fluctuation (ALFF) for resting-state fMRI: fractional ALFF. J. Neurosci. Methods 172, 137–141. doi: 10.1016/j.jneumeth.2008.04.012 Gaebler, M., Biessmann, F., Lamke, J., Müller, K., Walter, H., and Hetzer, S. (2014). Stereoscopic depth increases intersubject correlations of brain networks. Neuroimage 100, 427–434. doi: 10.1016/j.neuroimage.2014. 06.008 Conflict of Interest: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest. Conflict of Interest: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest. Havranek, M., Langer, N., Cheetham, M., and Jäncke, L. (2012). Perspective and agency during video gaming influences spatial presence experience and brain activation patterns. Behav. Brain Funct. 8:34. doi: 10.1186/1744- 9081-8-34 Copyright © 2019 Forlim, Bittner, Mostajeran, Steinicke, Gallinat and Kühn. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. Jäncke, L., Cheetham, M., and Baumgartner, T. (2009). FUNDING The study has been funded by a grant of the German Science Foundation (SFB 936/C7). SK has been additionally funded by the German Science Foundation (Deutsche Forschungsgemeinschaft, DFG KU 3322/1-1), the European Union (European Research Council, ERC-2016-StG- Self-Control-677804) and a Fellowship from the Jacobs The study has been funded by a grant of the German Science Foundation (SFB 936/C7). SK has been additionally funded by the German Science Foundation (Deutsche Forschungsgemeinschaft, DFG KU 3322/1-1), the European Union (European Research Council, ERC-2016-StG- Self-Control-677804) and a Fellowship from the Jacobs The study has been funded by a grant of the German Science Foundation (SFB 936/C7). SK has been additionally funded by the German Science Foundation (Deutsche Forschungsgemeinschaft, DFG KU 3322/1-1), the European Union (European Research Council, ERC-2016-StG- Self-Control-677804) and a Fellowship from the Jacobs ACKNOWLEDGMENTS We thank Maxi Becker and Karolin Ney for helping in the data acquisition and recruiting process. AUTHOR CONTRIBUTIONS LB, FM, and FS: game development. JG and SK: experimental conception and design. CF and LB: data acquisition. CF and SK: data analysis. CF, LB, FM, FS, JG, and SK: manuscript writing and revision. Our hypothesis was that the condition that elicits the most brain connectivity should be most suited for long-term brain training interventions, assuming that extended training under these conditions could permanently improve brain connectivity October 2019 | Volume 13 | Article 365 Frontiers in Human Neuroscience | www.frontiersin.org 11 Forlim et al. Higher FC in VR Stereoscopic Rendering Foundation (JRF 2016-2018). For this work, FS and FM were partially funded by the German Science Foundation and the European Union. REFERENCES Virtual reality and the role of the prefrontal cortex in adults and children. Front. Neurosci. 3, 52–59. doi: 10.3389/neuro.01.006.2009 Kober, S. E., Kurzmann, J., and Neuper, C. (2012). Cortical correlate of spatial presence in 2D and 3D interactive virtual reality: an EEG study. Int. J. Psychophysiol. 83, 365–374. doi: 10.1016/j.ijpsycho.2011.12.003 October 2019 | Volume 13 | Article 365 Frontiers in Human Neuroscience | www.frontiersin.org 12
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applied sciences Article Seismic Reflection Analysis of AETA Electromagnetic Signals Zhenyu Bao 1 , Shanshan Yong 2, *, Xin’an Wang 1, *, Chao Yang 1 , Jinhan Xie 1 and Chunjiu He 1 1 2 *   Citation: Bao, Z.; Yong, S.; Wang, X.; Yang, C.; Xie, J.; He, C. Seismic Reflection Analysis of AETA Electromagnetic Signals. Appl. Sci. 2021, 11, 5869. https://doi.org/ The Key Laboratory of Integrated Microsystems, Peking University Shenzhen Graduate School, Shenzhen 518055, China; 1901213009@pku.edu.cn (Z.B.); 1801213329@pku.edu.cn (C.Y.); xiejinhan0428@pku.edu.cn (J.X.); hechunjiu@pku.edu.cn (C.H.) Engineering Department, Shenzhen MSU-BIT University, Shenzhen 518055, China Correspondence: yongshanshan@pku.edu.cn (S.Y.); anxinwang@pku.edu.cn (X.W.); Tel.: +86-0755-2603-3003 (S.Y.) Abstract: Acoustic and electromagnetics to artificial intelligence (AETA) is a system used to predict seismic events through monitoring of electromagnetic and geoacoustic signals. It is widely deployed in the Sichuan–Yunnan region (22◦ N–34◦ N, 98◦ E–107◦ E) of China. Generally, the electromagnetic signals of AETA stations near the epicenter have abnormal disturbances before an earthquake. When a significant decrease or increase in the signal is observed, it is difficult to quantify this change using only visual observation and confirm that it is related to an upcoming large earthquake. Considering that the AETA data comprise a typical time series, current work has analyzed the anomalism of AETA electromagnetic signals using the long short-term memory (LSTM) autoencoder method to prove that the electromagnetic anomaly of the AETA station can be regarded as an earthquake precursor. The results show that there are 2–4% anomalous points and some outliers exceeding 0.7 (after normalization) in the AETA stations within 200 km of the epicenter of the Jiuzaigou earthquake (M. 7.0) and the Yibin earthquake (M. 6.0) half a month before the earthquakes. Therefore, the AETA electromagnetic disturbance signal can be used as an earthquake precursor and for further earthquake prediction. Keywords: AETA; anomaly detection; LSTM autoencoder; earthquake precursor; unsupervised learning 10.3390/app11135869 Academic Editors: Sławomir Nowaczyk, Mohamed-Rafik Bouguelia and Hadi Fanaee Received: 2 June 2021 Accepted: 22 June 2021 Published: 24 June 2021 Publisher’s Note: MDPI stays neutral with regard to jurisdictional claims in published maps and institutional affiliations. Copyright: © 2021 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https:// creativecommons.org/licenses/by/ 4.0/). 1. Introduction Before a large earthquake (M. > 6.0) occurs, there are many abnormal phenomena related to the earthquake which are called earthquake precursors. The International Association of Seismology and Physics of the Earth’s Interior (IASPEI) has a subcommittee that developed a list of such precursors, namely seismic quiescence, a decrease in radon concentration, other geochemical phenomenon, and changes in ground water levels [1]. Precursor phenomena not included in the IASPEI list have also been confirmed as potential earthquake prediction tools, such as anomalous electromagnetic field changes, abnormal animal behavior, and fault creep or continuous strain. With the improvement of computer computing performance, many data analysts have attempted to utilize earthquake-related signals with machine learning or deep learning models for earthquake prediction or warning. However, it is necessary to establish that the signal anomaly is related to seismic activities before using algorithms to analyze the signal. The correlation analysis between seismic precursors and earthquake activities has always attracted the attention of geophysicists, geologists, and data analysts. Precursor signals with great correlation have stronger interpretability and even better performance in downstream tasks such as earthquake early warning. Some animals have evolved to develop a vibration-triggered early warning response, as outlined by Kirschvink, which acts in the short time interval between the arrival of P and S waves [2]. Kulahci utilized time series analysis to determine that stress accumulation preceding the earthquake could cause the radon anomaly [3]. Han, P. et al., who used a method named superposed epoch analysis (SEA), observed that the ULF geomagnetic anomalies are more likely seen 6–15 days before Appl. Sci. 2021, 11, 5869. https://doi.org/10.3390/app11135869 https://www.mdpi.com/journal/applsci Appl. Sci. 2021, 11, 5869 2 of 16 sizeable earthquake events (Es ≥ 108) [4]. The moving median method was used in total electron content (TEC), land surface temperature (LST), and aerosol optical depth (AOD) analysis, and the result in Sekertekin’s study confirmed that those data are important potential precursors for earthquake prediction [5]. Genzano, N. executed a correlation analysis between significant sequences of thermal anomalies (SSTAs) and M. ≥ 6 Japanese earthquakes by using robust satellite techniques (RSTs), which address the constraints concerning space, time, and magnitude [6]. Many such methods have been used in the correlation analysis of seismic precursors. The LSTM autoencoder (LAE) is an unsupervised neural network that analyzes the anomaly information of the original data by reconstructing it, and this approach is often used for anomaly detection of temporal series. Feng et al. used the autoencoder method to explore the latent space distribution without anomaly analysis from past seismic events, which was used as input for a subsequent earthquake prediction model [7]. Paul, S. et al. developed an unsupervised model using the LAE algorithm to mimic the daily activities of employees to detect anomalous employee behavior of a community [8]. The algorithm was also used to evaluate 12 representative types of anomalies from 1555 robot-assisted feeding executions by Park’s team, and, compared with five baseline detectors, the LAE achieved the best performance [9]. Hashimoto, S. et al. utilized the LAE method to prevent industrial accidents by taking the sequential skeleton map as the input [10]. LSTM autoencoder and one-class support vector machines were combined by researchers in synthetic data and real data of fashion retail, which comprised a multivariate time series, to detect anomalies; the obtained results led to better performance compared to other machine learning methods [11]. Khan et al. proposed a hybrid intelligent intrusion detection system, which was developed using the Spark MLlib and an LSTM autoencoder deep learning approach; the simulation results significantly outperformed existing intrusion detection approaches for the ISCX-UNB dataset [12]. A combination of LSTM and variational AE was used in Kim’s research, which can diagnose abnormal network situations as well as ensure that the credibility of the diagnosis is estimated via the anomaly score-based negative log-likelihood [13]. Due to the timing of AETA electromagnetic signals, the aim of the present study was to confirm, using the LAE algorithm, that the AETA station has an abnormal electromagnetic disturbance before the earthquake, which can be considered as an earthquake precursor. The signals have the potential to be used as a tool for researchers to predict earthquakes. In Section 2, we introduce the detailed parameters of the AETA equipment developed by our laboratory and the deployment of AETA stations in Sichuan and Yunnan. In Section 3, the method of LAE and interquartile range (IQR) and the construction of input samples are described. Section 4 describes the analysis of specific earthquake cases. Afterwards, the research work of this article is summarized in the Conclusions. 2. AETA System Acoustic and electromagnetics to artificial intelligence (AETA) is a system designed by the IMS Laboratory of Peking University for earthquake monitoring and prediction. It consists of an underground signal acquisition probe, a ground data processing terminal, a monitoring cloud platform, and a data analysis system, as shown in Figure 1. The underground part contains electromagnetic and geoacoustic sensor probes, which are utilized to collect electromagnetic and geoacoustic signals in real time. First, the collected data are transmitted to the terminal with the function of data processing on the ground. Processed data are then received by the monitoring cloud platform through the network for further analysis by the researchers [14]. This article focuses on the anomaly analysis of an impending earthquake based on AETA electromagnetic data. The design of the AETA electromagnetic sensor is similar to that of the search-coil magnetometer instrument (IMSC) on the French DEMETER and that on the Chinese electromagnetic satellite, based on Faraday’s electromagnetic theory. The induced electromotive force obtained from the magnetic field changing in the vertical Appl. Sci. 2021, 11, 5869 3 of 16 direction is inputted into the front-end signal processing circuit for amplification, and is then filtered and processed via digital-to-analog conversion (DAC). The processed signal passes through the back-end acquisition circuit, which has a strong processing speed, STM32F407 as the control unit, and a W5300 high-speed Ethernet communication interface chip as the data transmission module to meet the needs of real-time detection. The parameters of the electromagnetic sensor are as follows: the electromagnetic probe monitors 0.1 Hz~10 kHz, covering very low frequency and ultra-low frequency electromagnetic bands with a wide dynamic range of 0.1~1000 nT. The device has an 18-bit resolution, a sensitivity of >20 mV/nT@ 0.1 Hz–10 kHz, and a noise level of 0.1–0.2 pT/Hz@ (10 Hz–1 kHz). Appl. Sci. 2021, 11, x FOR PEER REVIEW 3 of of 16 It has a low frequency sampling rate of 500 Hz and a full frequency sampling rate 30 kHz [15]. Figure 1. Block diagram of AETA system. So far, the IMS laboratory has installed more 200 AETAearthquake devices nationwide, This article focuses on the anomaly analysis ofthan an impending based on ◦ N, 98◦ E–107◦ E). and 150 of them are in data. the regions of Sichuan and Yunnan (22◦ N–34sensor AETA electromagnetic The design of the AETA electromagnetic is similar to The reason for this is that this area has high incidence and more than that of the search-coil magnetometer instrument (IMSC)ofonearthquakes, the French DEMETER and 200 earthquakes with a magnitude of 3.5 or higher have occurred there since 2017,theory. which that on the Chinese electromagnetic satellite, based on Faraday’s electromagnetic requires further investigation. distribution of magnetic all stations in 4Sichuan and Yunnan is The induced electromotive forceThe obtained from the field changing in the vertical Appl. Sci. 2021, 11, x FOR PEER REVIEW of 16 shown in Figure 2. direction is inputted into the front-end signal processing circuit for amplification, and is then filtered and processed via digital-to-analog conversion (DAC). The processed signal passes through the back-end acquisition circuit, which has a strong processing speed, STM32F407 as the control unit, and a W5300 high-speed Ethernet communication interface chip as the data transmission module to meet the needs of real-time detection. The parameters of the electromagnetic sensor are as follows: the electromagnetic probe monitors 0.1 Hz~10 kHz, covering very low frequency and ultra-low frequency electromagnetic bands with a wide dynamic range of 0.1~1000 nT. The device has an 18-bit resolution, a sensitivity of >20 mV/nT@0.1 Hz–10 kHz, and a noise level of 0.1–0.2 pT/Hz@ (10 Hz–1 kHz). It has a low frequency sampling rate of 500 Hz and a full frequency sampling rate of 30 kHz [15]. So far, the IMS laboratory has installed more than 200 AETA devices nationwide, and 150 of them are in the regions of Sichuan and Yunnan (22° N–34° N, 98° E–107° E). The reason for this is that this area has high incidence of earthquakes, and more than 200 earthquakes with a magnitude of 3.5 or higher have occurred there since 2017, which requires further investigation. The distribution of all stations in Sichuan and Yunnan is shown in Figure 2. Figure 2. AETA stations located in Sichuan–Yunnan area. Figure 2. AETA stations located in Sichuan–Yunnan area. 3. Algorithm and Sample Extraction 3.1. Anomalies of Electromagnetic Signals before the Earthquake The analyzed cases were selected from earthquakes (M. > 6.0) in the target area (22° N–34° N, 98° E–107° E) in recent years: 1. On 8 August 2017, a magnitude 7.0 earthquake occurred in Jiuzhaigou County, Aba Appl. Sci. 2021, 11, 5869 4 of 16 3. Algorithm and Sample Extraction 3.1. Anomalies of Electromagnetic Signals before the Earthquake The analyzed cases were selected from earthquakes (M. > 6.0) in the target area (22◦ N–34◦ N, 98◦ E–107◦ E) in recent years: 1. 2. On 8 August 2017, a magnitude 7.0 earthquake occurred in Jiuzhaigou County, Aba Prefecture, Northern Sichuan Province. Figure 3 shows the changes of the electromagnetic disturbance signal of the AETA stations near the epicenter; On 17 June 2019, a magnitude 6.0 earthquake occurred in Changning County, Yibin City, Sichuan Province. Figure 4 shows the changes in electromagnetic disturbance signals of the AETA stations near the epicenter. 3 Figure 3. Electromagnetic signals from three stations near the Jiuzhaigou earthquake. 3 4 4 Figure 4. Electromagnetic signals from three stations near the Yibin earthquake. The red line at the top of the figure indicates the main shock and the aftershocks that followed. It can be seen from Figures 3 and 4 that there are some signal anomalies before the earthquakes, and we argue that the abnormal change is related to the occurrence of earthquakes. It is difficult to quantify such anomalies directly from manual observations, and there may be other undetectable changes 2in addition to this obvious information. These subtle anomalies mixed with abnormal disturbances are difficult to detect with the naked 2 Appl. Sci. 2021, 11, 5869 5 of 16 eye. Therefore, a lot of potentially abnormal information will be lost directly through simple observation. In order to discover the hidden information, we chose the LSTM autoencoder model to capture anomalies. 3.2. LAE and IQR Method The autoencoder (AE) is an unsupervised neural network that aims to learn the reconstruction close to its original input. In general, it consists of two parts, an encoder network and a decoder network. The encoder reduces the dimension of the input vector x ∈ Rm and compresses it to the hidden vector h ∈ Rn (n < m), and then the decoder raises the dimension of the obtained hidden vector h and maps it back to the original input space to obtain the reconstructed vector x̂ ∈ Rm . The difference between the original input vector x and the reconstructed vector x̂ is called the reconstruction error L( x, x̂ ) [16]. The autoencoder updates the weight of the network by minimizing the reconstruction error L: L= 1 k x − x̂ k2 2∑ x (1) The role of the autoencoder is not just to simply copy the input to the output. By constraining the latent space to have a smaller dimension than the input, i.e., n < m, the autoencoder is forced to learn the most salient features of the training data [17]. In other words, the autoencoder has a significant function in that it can find the regular or general pattern of the input data by reconstructing it. Common autoencoders include the vanilla autoencoder [18], the convolutional autoencoder [19], the regularized autoencoder [20], and the LSTM autoencoder (LAE). As a form of sensor monitoring data, the AETA electromagnetic signal is a typical time series. The ability of LSTM to learn the patterns of long data makes it suitable for time series prediction or anomaly detection, and it is often used to capture the time dependence in multivariate data and determine whether data are out of distribution in a long time series. [21] In an LAE, both the encoder and decoder are LSTM networks. On the one hand, the fixed number of hidden units limit the model to learning the trivial mapping of the input; on the other hand, the same LSTM operation is performed recursively on the learned representation at any stage of decoding, which further hinders the model from learning the original mapping. This also explains why the LAE algorithm can achieve a reconstructed signal that presents almost all the input information but with a representation no better than the input [22]. The structure of the AE and LAE is shown as Figure 5. The LAE created for AETA electromagnetic anomaly monitoring had two units corresponding to the encoding and decoding parts. The encoder consists of an LSTM layer with a size of 100 and a repeating module that is used to increase the dimension of the vector output by the former. There is also an LSTM layer and a flatten layer, which are used to transform the hidden layer vector from the encoder into reconstruction sequences with the same dimension as the input. The activation function applied for the LAE model was ReLU, which is based on a trial and error validation. We chose the Adam optimization as the optimizer and the mean square error (MSE) shown in Formula (1) as the loss function. The training data were shuffled for every epoch, and each station was trained for a sufficient number of epochs, about 200. The learning rate was initialized to 0.001. The weight decay was set to 0.005 and the dropout at 0.5, for all layers. The model stopped training data when the loss of validation set did not decrease for 50 consecutive generations. Quartiles were always used to draw box plots in statistics; that is, all values were arranged from small to large and divided into four equal parts. The value at the position of the three division points is the quartile. Interquartile range (IQR) is a method in descriptive statistics that represents a set of data arranged in order, as well as the difference between the upper quartile Q3 and the lower quartile Q1 [23]. When the IQR method is utilized for Appl. Sci. 2021, 11, 5869 words, the autoencoder has a significant function in that it can find the regular or general pattern of the input data by reconstructing it. Common autoencoders include the vanilla autoencoder [18], the convolutional autoencoder [19], the regularized autoencoder [20], and the LSTM autoencoder (LAE). As a 6 of 16 form of sensor monitoring data, the AETA electromagnetic signal is a typical time series. The ability of LSTM to learn the patterns of long data makes it suitable for time series prediction or anomaly detection, and it is often used to capture the time dependence in multivariate data and determine whether data are out of distribution in a long time series. the monitoring of abnormal phenomena, the outliers are usually defined as values less [21] an LAE, both the encoder decoder are LSTM networks. On the one hand, the thanIn Qlower or greater than Qupper ,and as the following formula: fixed number of hidden units limit the model to learning the trivial mapping of the input; on the other hand, the same LSTM operation recursively on the learned repIQR = Qis3 performed − Q1 (2) resentation at any stage of decoding, which further hinders the model from learning the Qlower Q1 LAE − 1.5IQR (3) original mapping. This also explains why=the algorithm can achieve a reconstructed signal that presents almost all the input information but with a representation no better Q = Q3 + 1.5IQR (4) than the input [22]. The structure ofupper the AE and LAE is shown as Figure 5. autoencoder andand LSTM autoencoder. (a) Autoencoder model;model; (b) LSTM Figure 5. 5. The Thestructure structureofofthethe autoencoder LSTM autoencoder. (a) Autoencoder (b) LSTM autoencoder autoencoder model.model. The LAE reason for the robustness of IQR is that anomaly up to 25% of the datahad cantwo become The created for AETA electromagnetic monitoring units arbicortrarily distanced without greatly disturbing Q or Q so that outliers cannot affect this 3 The 1encoder consists of an LSTM layer responding to the encoding and decoding parts. standard [24]. with a size of 100 and a repeating module that is used to increase the dimension of the vector output by the former. There is also an LSTM layer and a flatten layer, which are 3.3. Sample Construction used to transform the hidden layer vector from the encoder into reconstruction sequences AETAdimension signal is highly time, the quantity of data large, the with The the same as the correlated input. Thewith activation function applied foristhe LAEand model information contained in a single point is insufficient. It is difficult for analysts who directly was ReLU, which is based on a trial and error validation. We chose the Adam optimization observe signals or utilize machine learning methods to process data(1) to as obtain valuable as the optimizer and the mean square error (MSE) shown in Formula the loss funcinformation, and they are likely to fall into a dilemma that they cannot resolve. tion. The training data were shuffled for every epoch, and each station was trained for a sufficient number of epochs, about 200. The learning rate was initialized to 0.001. The 1 n weight decay was set to 0.005 and thexdropout = ∑ at xi 0.5, for all layers. The model stopped (5) n i =1 n represents the total number of AETA electromagnetic data for half an hour. We selected the electromagnetic disturbance data from 10 June 2017 to 10 December 2020, and, through the above formula, we obtained the average value of electromagnetic granularity data for 30 min. After that, the sliding window of the feature data processed from the AETA electromagnetic sensor was used as the input sequence, and the label had the same nature as the input with the size of 48, which was used to train the model more accurately, expand the training samples, and seek the abnormal information of the electromagnetic signal. Generally, since there are mostly samples with small magnitudes and too few instances with high magnitudes, it is necessary to consider how to handle class imbalance when performing earthquake prediction or magnitude classification tasks. However, the current study is an anomaly analysis of the AETA signal before the large earthquake, and there is no problem of sample imbalance. The sliding window method is shown in Figure 6, and a total of 58,302 samples were obtained. Appl. Sci. Sci. 2021, 2021, 11, 11, x5869 Appl. FOR PEER REVIEW 16 8 7ofof 16 Figure 6. 6. The Thesliding slidingwindow windowmethod method used used to to obtain obtain samples. samples. Figure 4. Results Results 4. 4.1. Seismic Case Analysis 4.1. Seismic Case Analysis During the period from 10 June 2017 to 10 December 2020, 92 earthquakes with During the period from 10 June 2017 to 10 December 2020, 92 earthquakes with magmagnitudes above 4.0 occurred in the target area (22◦ N–34◦ N, 98◦ E–107◦ E) selected in nitudes above 4.0 occurred in the target area (22° N–34° N, 98° E–107° E) selected in this this study. Two earthquakes with a magnitude over 6.0 were chosen for this study through study. Two earthquakes with a magnitude over 6.0 were chosen for this study through analyzing the outliers of the difference between reconstructed and original series to verify analyzing the outliers of the difference between reconstructed and original series to verify that the abnormal AETA data can reflect an impending large earthquake. The epicenter of that the abnormal AETA data can reflect an impending large earthquake. The epicenter of two major earthquakes and nearby stations is shown in Figure 7. two major earthquakes and nearby stations is shown in Figure 7. 4.1.1. Analysis of Jiuzhaigou M. 7.0 Earthquake When the Jiuzhaigou M. 7.0 earthquake occurred, there were six effective AETA monitoring stations within 200 km of the epicenter. Table 1 shows the location and installation date of stations within 200 km of the earthquakes. Figure 8 shows the fitting effect of the LAE on the electromagnetic data of JZG and SP stations half a month before and one week after the earthquake. Figure 9 shows the curve fitted by the model on a specific day with or without anomalies, which can show the fitting ability of the model more clearly. From Figures 8 and 9, it can be seen that the LAE algorithm has an excellent ability to reconstruct time series data, which can fit the rising or falling trend of original data well. Figure 8 shows that both stations showed anomalous phenomena before the earthquake day (8 August). The anomalies gradually disappeared, and the deviation value tended to be stable after that day. In particular, the JZG station showed some abnormalities on 1 August and 3 August, and the SP stations showed strong abnormalities on 31 July and 1 August. At other times, the difference between the reconstructed and the raw value was within the normal range. From the detailed diagram of a single day, the model shows a strong fitting ability and can reconstruct the input data well, while it can no longer find the trend of the data, showing a larger deviation from the original input. In order to enhance the robustness of the conclusion, we counted the number of outliers in all six stations before and after the earthquake, so that the anomalies of each station appear more intuitively in mathematical statistics. The abnormal points are defined as follows: ( 0, i f |y − ŷ| ≤ yupper ∆y = (6) y − ŷ ŷ| > ystations. | |, i fand |y −nearby upper Figure 7. The epicenter of two major earthquakes (a) Jiuzhaigou M. 7.0; (b) Yibin whereM.y 6.0. and ŷ represent the input and reconstructed data point, respectively. The deviation is ∆y, and the IQR threshold value is yupper . When ∆y > 0, the point belongs to an abnormal 4.1.1. of Jiuzhaigou M.the 7.0point Earthquake point.Analysis Otherwise, we consider as a normal point. If the point ∆y > 0.7, the point When the Jiuzhaigou M.at7.0 thereresults were are sixshown effective AETA2. belongs to “outliers over 0.7” theearthquake same time. occurred, The statistical in Table monitoring 200 the epicenter. Table 1 shows and instalIt can stations be seen within in Table 2 km that,ofbefore the earthquake, aboutthe 2%location of the points had lation date ofAmong stationsthem, within 200stations km of the Figure 8 shows effect anomalies. MX hadearthquakes. the most total outliers, and,the forfitting the class of of the LAE on the electromagnetic data of JZG and SP stations half a month before and Appl. Sci. 2021, 11, 5869 5 8 of 16 outliers exceeding 0.7, SP showed the most with two points. There were only six abnormal points in QCX with no value exceeding 0.7. In summary, before the Jiuzhaigou earthquake, the electromagnetic data of all the AETA stations showed abnormal disturbances, and that the number of anomalous points was irrelevant to the distance from the station to the epicenter. The reason may be that the electromagnetic waves received by different stations contain different seismic information that depends on geological structure when the electromagnetic data are propagated underground. Figure 7. The epicenter of two major earthquakes and nearby stations. (a) Jiuzhaigou M. 7.0; (b) Yibin M. 6.0. Table 1. AETA Station within 2003 km of the Jiuzhaigou epicenter. No. Station Installation Location Epicenter Distance — Epicenter — 33.20◦ N, 103.82◦ E 0 1 JZG 10 June 2017 33.25◦ E 40 km 2 SP 12 June 2017 32.65◦ N, 103.60◦ E 64 km 8 June 2017 32.41◦ 7 June 2017 32.59◦ 13 June 2017 31.69◦ 13 June 2017 31.48◦ 3 4 5 6 PW QC MX WC N, 104.24◦ N, 104.55◦ E 111 km N, 105.23◦ E 147 km N, 103.85◦ E 167 km N, 103.59◦ E 192 km Appl. Sci. 2021, 11, 5869 9 of 16 4.1.2. Analysis of Yibin M. 6.0 Earthquake 7 8 When the Yibin M. 6.0 earthquake occurred, there were more than 30 AETA monitoring stations within 200 km of the epicenter, 27 of which were operating normally and had robust data. Table 3 shows the location and installation date of stations within 200 km of the earthquakes. Figure 10 shows the abnormal values after LAE fitting, which can more intuitively show the abnormality before and after the earthquake. Figure 8. Electromagnetic disturbance, fitting vector and reconstruction deviation in JZG and SP stations. Figure 10 shows the statistical abnormal points at the PSFR, GAX and MBXB stations. Among them, IQR − Diff refers to ∆y in Formula (6), and IQR − Prop is the abnormal point obtained after we normalized the outlier and recalculated the IQR anomaly. We can see that some stations exhibited anomalies before the earthquake in the first and last pictures in Figure 10, and the middle section shows that some stations have abnormal data after the earthquake. The number or amplitude of the outliers obtained by Diff and Prop are similar, which further demonstrates the robustness of the method of extracting anomalies from the results of LAE processing. The IQR-Prop calculation method is defined as follows: ymin = min( xn ) (7) ymax = max ( xn ) (8) y= (a) 9 4 ∆y − ymin ymax − ymin (b) (9) Appl. Sci. 2021, 11, 5869 10 of 16 ( ∆y Prop = 8 i f y ≤ yupper i f y > yupper 0, y, (10) where xn is the deviation series of LAE input and output, y is the normalized result of xn , yupper is the IQR anomaly threshold calculated after the sequence is standardized, and the anomaly value is ∆y Prop . The number of abnormal points at each station is shown in Table 4. (a) (b) Figure 9. A detailed fitted curve for one day. (a) The fitting curve without anomalies; (b) the fitting curve with anomalies. 9 Table 2. Station abnormal points before the Jiuzhaigou earthquake. No. Station Abnormal Points Outliers over 0.7 Total Points Epicenter Distance 4 1 JZG 16 0 1152 40 km 2 SP 17 2 1152 64 km 3 PWX 12 0 1152 111 km 4 QCX 6 0 1152 147 km 5 MX 45 1 1152 167 km 6 WC 12 0 1152 192 km 4.2. Comparison with Principal Component Analysis (PCA) Method PCA is a method widely used in the field of data mining and data analysis. It has the advantages of separating different signals and effectively identifying relatively weak signals and can be used for pre-earthquake electromagnetic disturbance analysis and total electron content (TEC) anomaly detection [25–27]. Therefore, we compared the results of the anomaly analysis of the Jiuzhaigou earthquake with those of the LAE using the PCA method. The results of the PCA are shown in Figure 11. Figure 11 shows the thermogram of the abnormal values of each monitoring station from 1 August 2017 to 31 August 2017. The abscissa and the ordinate represent date and time, respectively. It can be seen from the figure that 5 days before the earthquake a continuous anomaly band with an increasing level of abnormality appeared at the JZG monitoring station at 5 ∼ 6 o’clock, and that the value of the abnormal points exceeded two in the 2 days before the earthquake, which was significantly higher than the other historical abnormal points in the background. The outlier point appeared at 21 ∼ 22 o’clock on the day of the earthquake, which means that the anomaly degree of the electromagnetic data at this time is greater than that at other times of the day. After the earthquake, the anomaly degree weakened generally, and the abnormal band appeared again at 5 ∼ 6 o’clock and lasted 15 days. However, other monitoring stations near the seismic epicenter have a Appl. Sci. 2021, 11, 5869 11 of 16 relatively small degree of anomaly, and their thermograms do not constitute a continuous band anomaly. Table 3. AETA Station within 200 km of the Yibin epicenter. No. Station Installation Location Epicenter Distance — Epicenter 12 December 2017 28.34◦ N, 104.90◦ E 0 1 2 3 GOX GAX YBYX 13 January 2017 28.38◦ 13 March 2017 28.44◦ 12 December 2017 29.03◦ 28.71◦ N, 104.79◦ E 11 km N, 104.51◦ E 39 km N, 104.56◦ E 83 km N, 104.15◦ 4 PSFR 12 December 2017 E 84 km 5 ZGDA 21 August 2017 29.38◦ N, 104.78◦ E 115 km 6 MC 11 June 2017 28.96◦ N, 103.90◦ E 119 km 11 October 2018 28.83◦ 12 October 2018 28.71◦ 8 June 2017 29.21◦ 7 8 9 MBXB MBMZ JWX N, 103.73◦ E 126 km N, 103.64◦ E 129 km N, 103.94◦ E 134 km N, 103.59◦ 10 MBJS 9 October 2018 28.78◦ E 137 km 11 YJX 11 October 2018 28.70◦ N, 103.52◦ E 140 km 16 October 2018 28.83◦ 10 October 2018 28.71◦ 12 October 2018 28.99◦ 21 August 2017 28.99◦ 12 13 14 15 MB YFZ MBRD DZB N, 103.54◦ E 143 km N, 103.46◦ E 146 km N, 103.59◦ E 146 km N, 103.47◦ E 157 km N, 103.72◦ 16 ZT 21 August 2017 27.32◦ E 162 km 17 SKH 1 August 2018 28.88◦ N, 103.35◦ E 162 km 9 October 2018 29.65◦ 1 August 2018 29.58◦ 9 October 2018 29.42◦ 22 August 2017 27.24◦ 18 19 20 21 JY LSS LSSW LD N, 104.06◦ E 166 km N, 103.75◦ E 177 km N, 103.55◦ E 177 km N, 103.55◦ E 180 km N, 103.25◦ 22 EB 11 April 2017 29.23◦ E 188 km 23 GQZ 1 August 2018 29.52◦ N, 103.43◦ E 194 km 5 June 2017 29.59◦ 12 December 2017 29.84◦ 1 August 2018 29.58◦ 24 25 26 EMS QSX HWZ N, 103.50◦ E 194 km N, 103.85◦ E 195 km N, 103.43◦ E 198 km In short, compared with the PCA method, the LAE can be used to observe the anomaly time and amplitude of the station more intuitively and conveniently. At the same time, in terms of the ability to identify seismic anomalies, the LAE method is robust. For example, for stations such as SP, it can capture anomalies not found by the PCA method. Therefore, the LAE is more suitable for anomaly analysis of AETA data before earthquakes. Appl. Sci. 2021, 11, 5869 10 12 of 16 Figure 10. The abnormal values in PSFR, GAX and MBXB stations before the Yibin earthquake. 5 Appl. Sci. 2021, 11, 5869 13 of 16 Table 4. Station abnormal points before the Yibin earthquake. No. Station Abnormal Points Outliers over 0.7 Total Points Epicenter Distance 1 GOX 35 5 1152 11 km 2 GAX 11 0 1152 39 km 3 YBYX 12 0 1152 83 km 4 PSFR 12 0 1152 84 km 5 ZGDA 6 0 1152 115 km 6 MC 15 1 1152 119 km 7 MBXB 17 0 1152 126 km 8 MBMZ 5 0 1152 129 km 9 JWX 12 0 1152 134 km 10 MBJS 9 0 1152 137 km 11 YJX 9 2 1152 140 km 12 MB 6 0 1152 143 km 13 YFZ 16 0 1152 146 km 14 MBRD 8 0 1152 146 km 15 DZB 14 0 1152 157 km 16 ZT 35 0 1152 162 km 17 SKH 15 0 1152 162 km 18 JY 4 0 1152 166 km 19 LSS 11 0 1152 177 km 20 LSSW 4 1 1152 177 km 21 LD 20 0 1152 180 km 22 EB 10 0 1152 188 km 23 GQZ 2 0 1152 194 km 24 EMS 16 3 1152 194 km 25 QSX 8 0 1152 195 km 26 HWZ 6 0 1152 198 km Appl. Sci. 2021, 11, 5869 14 of 16 11Thermogram of abnormal values in stations within 200 km of the Jiuzhaigou epicenter. (a) JZG station; (b) SP Figure 11. station; (c) PWX station; (d) QCX station; (e) MX station; (f) WC station. 5. Conclusions In this study, the LAE and IQR methods were utilized to analyze the electromagnetic signals of the AETA stations near the Jiuzhaigou and Yibin epicenter. The results show that the electromagnetic signals of the AETA stations are obviously abnormal before the two earthquakes. First, the time, value, and number of abnormal points in stations at different geographical locations are not consistent, which is probably due to the difference of geological structure and the distance from the epicenter. The stations that were further away from the epicenter may show stronger anomalies than those closer. In general, there was obvious abnormal information about half a month before the earthquake. Secondly, the stations near the seismic epicenter generally exhibited outliers accounting for 2 ∼ 4% of the total data, and some stations had outliers with anomaly values exceeding 0.7 before the occurrence of a large earthquake, which shows that the electromagnetic anomaly of the AETA station has a certain correlation with the earthquake. Finally, comparing the methods of LAE and PCA through the case of the Jiuzhaigou earthquake, we found that the abnormal performance of the station is more common based on the LAE method, and that the ability to respond to abnormalities is also stronger and more intuitive. While the PCA method has good earthquake reflection performance at the JZG station, the performance of the other stations is not effective, which further proves the robustness of the LAE method used in this study. In summary, the experiment in this study proves that the electromagnetic disturbance anomalies of the AETA station could imply an upcoming large earthquake, and that AETA electromagnetic signals can be regarded as a type of earthquake precursor. According to the experimental results, we believe that if 2% of abnormal points appear in most 6 Appl. Sci. 2021, 11, 5869 15 of 16 monitoring stations within half a month, it means that a certain area has a higher risk of strong earthquakes. In the future, we consider using a Generative Adversarial Networks (GAN) approach to generate several representative anomalous sequences. When the original signal matches these anomalous sequences, the system can automatically alert, which indicates that a certain area is facing the risk of high-level earthquakes. In addition, due to the complexity of actual seismic activity, it is difficult for us to directly estimate the geographical location of the epicenter from statistical values such as the number and amplitude of anomalous points. The use of AETA electromagnetic signals for earthquake prediction or early warning is awaiting further research in the future. Author Contributions: Conceptualization, Z.B., S.Y. and C.Y.; methodology, Z.B. and C.Y.; software, Z.B.; validation, Z.B., S.Y. and X.W.; formal analysis, Z.B.; investigation, Z.B. and C.H.; resources, S.Y. and X.W.; data curation, Z.B., J.X. and C.H.; writing—original draft preparation, Z.B.; writing— review and editing, S.Y., X.W. and C.Y.; visualization, Z.B. and J.X.; supervision, S.Y., X.W. and C.Y. All authors have read and agreed to the published version of the manuscript. Funding: This research was supported by a fundamental research grant from Shenzhen science & technology, grant number JCYJ20200109120404043 and KQTD20200820113105004. Institutional Review Board Statement: Not applicable. Informed Consent Statement: Not applicable. Data Availability Statement: The data presented in this study are available from the authors upon reasonable request. Conflicts of Interest: The authors declare no conflict of interest. References 1. 2. 3. 4. 5. 6. 7. 8. 9. 10. 11. 12. 13. 14. Wyss, M.; Booth, D.C. The IASPEI procedure for the evaluation of earthquake precursors. Geophys. J. Int. 1997, 131, 423–424. [CrossRef] Kirschvink, J.L. Earthquake prediction by animals: Evolution and sensory perception. Bull. Seismol. Soc. Am. 2000, 90, 312–323. [CrossRef] Kulahci, F.; Cicek, S. Time-series analysis of water and soil radon anomalies to identify micro–macro-earthquakes. Arab. J. Geosci. 2015, 8, 5239–5246. [CrossRef] Han, P.; Hattori, K.; Hirokawa, M.; Zhuang, J.; Yoshino, C. Statistical analysis of ULF seismomagnetic phenomena at Kakioka, Japan, during 2001–2010. J. Geophys. Res.-Space Phys. 2014, 119, 4998–5011. [CrossRef] Sekertekin, A.; Inyurt, S.; Yaprak, S. Pre-seismic ionospheric anomalies and spatio-temporal analyses of MODIS Land surface temperature and aerosols associated with Sep, 24 2013 Pakistan Earthquake. J. Atmos. Sol.-Terr. Phys. 2020, 200, 105218. [CrossRef] Genzano, N.; Filizzola, C.; Hattori, K.; Pergola, N.; Tramutoli, V. Statistical correlation analysis between thermal infrared anomalies observed from MTSATs and large earthquakes occurred in Japan (2005–2015). J. Geophys. Res.-Solid Earth 2021, 126, e2020JB020108. [CrossRef] Feng, B.; Fox, G.C. TSEQPREDICTOR: Spatiotemporal Extreme Earthquakes Forecasting for Southern California. arXiv 2020, arXiv:2012.14336. Paul, S.; Mishra, S. LAC: LSTM AUTOENCODER with Community for Insider Threat Detection. In Proceedings of the 4th International Conference on Big Data Research (ICBDR’20), Tokyo, Japan, 27–29 November 2020; pp. 71–77. Daehyung, P.; Hoshi, Y.; Kemp, C.C. A Multimodal Anomaly Detector for Robot-Assisted Feeding Using an LSTM-Based Variational Autoencoder. IEEE Robot. Autom. Lett. 2018, 3, 1544–1551. Hashimoto, S.; Yonghoon, J.; Kudo, K.; Takahashi, T.; Umeda, K. Anomaly Detection Based on Deep Learning Using Video for Prevention of Industrial Accidents. arXiv 2020, arXiv:2005.13734. Nguyen, H.D.; Tran, K.P.; Thomassey, S.; Hamad, M. Forecasting and Anomaly Detection approaches using LSTM and LSTM Autoencoder techniques with the applications in supply chain management. Int. J. Inf. Manag. 2021, 57, 102282. [CrossRef] Khan, M.A.; Kim, Y. Deep Learning-Based Hybrid Intelligent Intrusion Detection System. CMC-Comput. Mat. Contin. 2021, 68, 671–687. Kim, H.; Arigi, A.M.; Kim, J. Development of a diagnostic algorithm for abnormal situations using long short-term memory and variational autoencoder. Ann. Nucl. Energy 2021, 153, 108077. [CrossRef] Wang, X.; Yong, S.; Xu, B.; Liang, Y.; Bai, Z.; An, H.; Zhang, X.; Huang, J.; Xie, Z.; Lin, K.; et al. Research and Implementation of Multi-component Seismic Monitoring System AETA. Acta Sci. Nat. Univ. Pekin. 2018, 54, 487–494. Appl. Sci. 2021, 11, 5869 15. 16. 17. 18. 19. 20. 21. 22. 23. 24. 25. 26. 27. 16 of 16 Yong, S.; Wang, X.; Pang, R.; Jin, X.; Zeng, J.; Han, C.; Xu, B. Development of Inductive Magnetic Sensor for Multi-component Seismic Monitoring System AETA. Acta Sci. Nat. Univ. Pekin. 2018, 54, 495–501. Hinton, G.E.; Salakhutdinov, R.R. Reducing the dimensionality of data with neural networks. Science 2006, 313, 504–507. [CrossRef] [PubMed] Sepehr, M.; Sasan, M.; Nicholas, R.J. Unsupervised anomaly detection with LSTM autoencoders using statistical data-filtering. Appl. Soft. Comput. 2021, 108, 107443. Han, W.; Wang, G.; Tu, K. Latent variable autoencoder. IEEE Access 2019, 7, 48514–48523. [CrossRef] Geng, J.; Fan, J.; Wang, H.; Ma, X.; Li, B.; Chen, F. High-resolution SAR image classification via deep convolutional autoencoders. IEEE Geosci. Remote Sens. Lett. 2015, 12, 2351–2355. [CrossRef] Hong, C.; Chen, X.; Wang, X.; Tang, C. Hypergraph regularized autoencoder for image-based 3D human pose recovery. Signal Process. 2016, 124, 132–140. [CrossRef] Mallak, A.; Fathi, M. Sensor and Component Fault Detection and Diagnosis for Hydraulic Machinery Integrating LSTM Autoencoder Detector and Diagnostic Classifiers. Sensors 2021, 21, 433. [CrossRef] Nitish, S.; Elman, M.; Ruslan, S. Unsupervised Learning of Video Representations using LSTMs. In Proceedings of the ICML, Lille, France, 6–11 July 2015; pp. 843–852. Available online: http://proceedings.mlr.press/v37/srivastava15.html (accessed on 24 June 2021). Bollini, P.; Chisci, L.; Farina, A.; Giannelli, M.; Timmoneri, L.; Zappa, G. QR versus IQR algorithms for adaptive signal processing: Performance evaluation for radar applications. IEE Proc.-Radar Sonar Navig. 1996, 143, 328–340. [CrossRef] Yang, K.; Yuan, P.; Qin, C. Consider the IQR Law in the Detection of Outlier in Time Series Considering Skewness. J. Geod. Geodyn. 2015, 35, 793–796. Yim, U.H.; Hong, S.H.; Shim, W.J.; Oh, J.R.; Chang, M. Spatio-temporal distribution and characteristics of PAHs in sediments from Masan Bay, Korea. Mar. Pollut. Bull. 2005, 50, 319–326. [CrossRef] [PubMed] Lin, J. Two-dimensional ionospheric total electron content map (TEC) seismo-ionospheric anomalies through image processing using principal component analysis. Adv. Space Res. 2010, 45, 1301–1310. [CrossRef] Ansari, K.; Panda, S.K.; Jamjareegulgarn, P. Singular spectrum analysis of GPS derived ionospheric TEC variations over Nepal during the low solar activity period. Acta Astronaut. 2020, 169, 216–223. [CrossRef]
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Peer Review #1 of "Antibacterial activity of human defensins against Staphylococcus aureus and Escherichia coli (v0.1)"
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Manuscript to be reviewed Albert Bolatchiev C 1 Department of Clinical Pharmacology, Stavropol State Medical University, Stavropol, Russian Federation Corresponding Author: Albert Bolatchiev Email address: bolatalbert@gmail.com 1 Department of Clinical Pharmacology, Stavropol State Medical University, Stavropol, Russian Federation Corresponding Author: Albert Bolatchiev Email address: bolatalbert@gmail.com 1 Department of Clinical Pharmacology, Stavropol State Medical University, Stavropol, Russian Federation 1 Department of Clinical Pharmacology, Stavropol State Medical University, Stavropol, Russian Federation Corresponding Author: Albert Bolatchiev Corresponding Author: Albert Bolatchiev Email address: bolatalbert@gmail.com Background. The global problem of antibiotic resistance requires the search for and development of new methods of treatment. One of the promising strategies is the use of low doses of antimicrobial peptides, in particular, human defensins HNP-1, hBD-1, and hBD-3, in combination with antibacterial drugs already used in clinical practice. This approach may be used to increase the effectiveness of conventional antibiotics. However, this requires thorough study of the effectiveness of defensins in combination with antibiotics against a large number of bacterial strains with known phenotypes of antibiotic resistance. The aim of this work was to study the antibacterial effect of HNP-1, hBD-1 and hBD-3 in combination with rifampicin or amikacin against clinical isolates of Staphylococcus aureus (n = 27) and Escherichia coli (n = 24) collected from hospitalized patients. Methods. The standard checkerboard assay was used to determine minimum inhibitory concentrations (MICs) of antimicrobials. The combined microbicidal effects of two substances (defensin + conventional antibiotic) were assessed by the fractional inhibitory concentration index (FICI). Results. The highest anti-staphylococcal activity (including methicillin-resistant strains) among defensins was demonstrated by hBD-3 that had MIC of 1 (0.5-4) mg/L (hereinafter, MIC values ​are presented as median and interquartile range). The MIC of HNP-1 against S. aureus was 4 (2-8) mg/L; the MIC of hBD-1 was 8 (4-8) mg/L. Against E. coli, the most effective was also found to be hBD-3 that had MIC of 4 (4-8) mg/L; the MIC of HNP-1 was 12 (4-32) mg/L. The combinations of HNP-1 + rifampicin and hBD-3 + rifampicin demonstrated synergistic effects against S. aureus. Against E. coli, combinations of HNP-1 + amikacin and hBD-3 + amikacin also showed synergy of action. Manuscript to be reviewed 1 2 Antibacterial activity of human defensins against 3 Staphylococcus aureus and Escherichia coli 4 5 6 Albert Bolatchiev1 7 8 1 Department of Clinical Pharmacology, Stavropol State Medical University, Russian Federation 9 10 Corresponding Author: 11 Albert Bolatchiev1 12 Mira Street 310, Stavropol, 355000, Russian Federation 13 Email address: bolatalbert@gmail.com 14 15 Abstract 16 Background. The global problem of antibiotic resistance requires the search for and 17 development of new methods of treatment. One of the promising strategies is the use of low 18 doses of antimicrobial peptides, in particular, human defensins HNP-1, hBD-1, and hBD-3, in 19 combination with antibacterial drugs already used in clinical practice. This approach may be 20 used to increase the effectiveness of conventional antibiotics. However, this requires thorough 21 study of the effectiveness of defensins in combination with antibiotics against a large number of 22 bacterial strains with known phenotypes of antibiotic resistance. The aim of this work was to 23 study the antibacterial effect of HNP-1, hBD-1 and hBD-3 in combination with rifampicin or 24 amikacin against clinical isolates of Staphylococcus aureus (n = 27) and Escherichia coli (n = 25 24) collected from hospitalized patients. 26 Methods. The standard checkerboard assay was used to determine minimum inhibitory 27 concentrations (MICs) of antimicrobials. The combined microbicidal effects of two substances 28 (defensin + conventional antibiotic) were assessed by the fractional inhibitory concentration 29 index (FICI). 30 Results. The highest anti-staphylococcal activity (including methicillin-resistant strains) among 31 defensins was demonstrated by hBD-3 that had MIC of 1 (0.5-4) mg/L (hereinafter, MIC values 32 are presented as median and interquartile range). The MIC of HNP-1 against S. aureus was 4 (2- 33 8) mg/L; the MIC of hBD-1 was 8 (4-8) mg/L. Against E. coli, the most effective was also found 34 to be hBD-3 that had MIC of 4 (4-8) mg/L; the MIC of HNP-1 was 12 (4-32) mg/L. The 35 combinations of HNP-1 + rifampicin and hBD-3 + rifampicin demonstrated synergistic effects 36 against S. aureus. Against E. coli, combinations of HNP-1 + amikacin and hBD-3 + amikacin 37 also showed synergy of action. 2 Antibacterial activity of human defensins against 3 Staphylococcus aureus and Escherichia coli 4 15 Abstract 16 Background. The global problem of antibiotic resistance requires the search for and 17 development of new methods of treatment. One of the promising strategies is the use of low 18 doses of antimicrobial peptides, in particular, human defensins HNP-1, hBD-1, and hBD-3, in 19 combination with antibacterial drugs already used in clinical practice. This approach may be 20 used to increase the effectiveness of conventional antibiotics. However, this requires thorough 21 study of the effectiveness of defensins in combination with antibiotics against a large number of 22 bacterial strains with known phenotypes of antibiotic resistance. The aim of this work was to 23 study the antibacterial effect of HNP-1, hBD-1 and hBD-3 in combination with rifampicin or 24 amikacin against clinical isolates of Staphylococcus aureus (n = 27) and Escherichia coli (n = 25 24) collected from hospitalized patients. 26 Methods. The standard checkerboard assay was used to determine minimum inhibitory 27 concentrations (MICs) of antimicrobials. The combined microbicidal effects of two substances 28 (defensin + conventional antibiotic) were assessed by the fractional inhibitory concentration 29 index (FICI). 30 Results. The highest anti-staphylococcal activity (including methicillin-resistant strains) among 31 defensins was demonstrated by hBD-3 that had MIC of 1 (0.5-4) mg/L (hereinafter, MIC values 32 are presented as median and interquartile range). The MIC of HNP-1 against S. aureus was 4 (2- 33 8) mg/L; the MIC of hBD-1 was 8 (4-8) mg/L. Against E. coli, the most effective was also found 34 to be hBD-3 that had MIC of 4 (4-8) mg/L; the MIC of HNP-1 was 12 (4-32) mg/L. The 35 combinations of HNP-1 + rifampicin and hBD-3 + rifampicin demonstrated synergistic effects 36 against S. aureus. Against E. coli, combinations of HNP-1 + amikacin and hBD-3 + amikacin 37 also showed synergy of action. 38 Introduction 1 2 Antibacterial activity of human 3 Staphylococcus aureus and Es 4 5 6 Albert Bolatchiev1 7 8 1 Department of Clinical Pharmacology, Stavropol Stat 9 10 Corresponding Author: 11 Albert Bolatchiev1 12 Mira Street 310, Stavropol, 355000, Russian Federation 13 Email address: bolatalbert@gmail.com 14 15 Abstract 16 Background. The global problem of antibiotic resistan 17 development of new methods of treatment. One of the 18 doses of antimicrobial peptides, in particular, human de 19 combination with antibacterial drugs already used in cl 20 used to increase the effectiveness of conventional antib 21 study of the effectiveness of defensins in combination w 22 bacterial strains with known phenotypes of antibiotic re 23 study the antibacterial effect of HNP-1, hBD-1 and hBD 24 amikacin against clinical isolates of Staphylococcus au 25 24) collected from hospitalized patients. 26 Methods. The standard checkerboard assay was used t 27 concentrations (MICs) of antimicrobials. The combined 28 (defensin + conventional antibiotic) were assessed by t 29 index (FICI). 30 Results. The highest anti-staphylococcal activity (inclu 31 defensins was demonstrated by hBD-3 that had MIC of 32 are presented as median and interquartile range). The M 33 8) mg/L; the MIC of hBD-1 was 8 (4-8) mg/L. Against 34 to be hBD-3 that had MIC of 4 (4-8) mg/L; the MIC of 35 combinations of HNP-1 + rifampicin and hBD-3 + rifa 36 against S. aureus. Against E. coli, combinations of HN 37 also showed synergy of action. 38 Introduction 38 Introduction 1 2 Antibacterial activity of human defensins against 3 Staphylococcus aureus and Escherichia coli 4 5 6 Albert Bolatchiev1 7 8 1 Department of Clinical Pharmacology, Stavropol State Medical University, Russian Federation 9 10 Corresponding Author: 11 Albert Bolatchiev1 12 Mira Street 310, Stavropol, 355000, Russian Federation 13 Email address: bolatalbert@gmail.com 14 15 Abstract 16 Background. The global problem of antibiotic resistance requires the search for and 17 development of new methods of treatment. One of the promising strategies is the use of low 18 doses of antimicrobial peptides, in particular, human defensins HNP-1, hBD-1, and hBD-3, in 19 combination with antibacterial drugs already used in clinical practice. This approach may be 20 used to increase the effectiveness of conventional antibiotics. However, this requires thorough 21 study of the effectiveness of defensins in combination with antibiotics against a large number of 22 bacterial strains with known phenotypes of antibiotic resistance. The aim of this work was to 23 study the antibacterial effect of HNP-1, hBD-1 and hBD-3 in combination with rifampicin or 24 amikacin against clinical isolates of Staphylococcus aureus (n = 27) and Escherichia coli (n = 25 24) collected from hospitalized patients. 26 Methods. The standard checkerboard assay was used to determine minimum inhibitory 27 concentrations (MICs) of antimicrobials. The combined microbicidal effects of two substances 28 (defensin + conventional antibiotic) were assessed by the fractional inhibitory concentration 29 index (FICI). 30 Results. The highest anti-staphylococcal activity (including methicillin-resistant strains) among 31 defensins was demonstrated by hBD-3 that had MIC of 1 (0.5-4) mg/L (hereinafter, MIC values 32 are presented as median and interquartile range). The MIC of HNP-1 against S. aureus was 4 (2- 33 8) mg/L; the MIC of hBD-1 was 8 (4-8) mg/L. Against E. coli, the most effective was also found 34 to be hBD-3 that had MIC of 4 (4-8) mg/L; the MIC of HNP-1 was 12 (4-32) mg/L. The 35 combinations of HNP-1 + rifampicin and hBD-3 + rifampicin demonstrated synergistic effects 36 against S. aureus. Against E. coli, combinations of HNP-1 + amikacin and hBD-3 + amikacin 37 also showed synergy of action. PeerJ reviewing PDF | (2020:09:52766:1:0:NEW 20 Oct 2020) PeerJ reviewing PDF | (2020:09:52766:1:0:NEW 20 Oct 2020) PeerJ reviewing PDF | (2020:09:52766:1:0:NEW 20 Oct 2020) 15 Abstract 16 Background. The global problem of antibiotic resistance requires the search for and 17 development of new methods of treatment. One of the promising strategies is the use of low 18 doses of antimicrobial peptides, in particular, human defensins HNP-1, hBD-1, and hBD-3, in 19 combination with antibacterial drugs already used in clinical practice. This approach may be 20 used to increase the effectiveness of conventional antibiotics. However, this requires thorough 21 study of the effectiveness of defensins in combination with antibiotics against a large number of 22 bacterial strains with known phenotypes of antibiotic resistance. The aim of this work was to 23 study the antibacterial effect of HNP-1, hBD-1 and hBD-3 in combination with rifampicin or 24 amikacin against clinical isolates of Staphylococcus aureus (n = 27) and Escherichia coli (n = 25 24) collected from hospitalized patients. 26 Methods. The standard checkerboard assay was used to determine minimum inhibitory 27 concentrations (MICs) of antimicrobials. The combined microbicidal effects of two substances 28 (defensin + conventional antibiotic) were assessed by the fractional inhibitory concentration 29 index (FICI). 30 Results. The highest anti-staphylococcal activity (including methicillin-resistant strains) among 31 defensins was demonstrated by hBD-3 that had MIC of 1 (0.5-4) mg/L (hereinafter, MIC values 32 are presented as median and interquartile range). The MIC of HNP-1 against S. aureus was 4 (2- 33 8) mg/L; the MIC of hBD-1 was 8 (4-8) mg/L. Against E. coli, the most effective was also found 34 to be hBD-3 that had MIC of 4 (4-8) mg/L; the MIC of HNP-1 was 12 (4-32) mg/L. The 35 combinations of HNP-1 + rifampicin and hBD-3 + rifampicin demonstrated synergistic effects 36 against S. aureus. Against E. coli, combinations of HNP-1 + amikacin and hBD-3 + amikacin 37 also showed synergy of action. PeerJ reviewing PDF | (2020:09:52766:1:0:NEW 20 Oct 2020) Manuscript to be reviewed In the process of evolution, defense mechanisms have formed that allow first to 66 identify the pathogen and then, if necessary, to exercise adequate control of its further 67 penetration and spread. These tasks are accomplished through the innate immune system which 68 is capable (unlike the adaptive immunity system) of immediately recognizing and destroying 69 infectious agents of various nature (Iwasaki & Medzhitov, 2015). The most important component 70 of innate immunity is antimicrobial peptides (AMPs) with a length of 5 to ~100 amino acid 71 residues. These peptides have a broad spectrum of antimicrobial activity against various 72 infectious agents: bacteria, viruses, fungi and protozoa. Among the six kingdoms (bacteria, 73 archaea, protists, fungi, plants, and animals), more than 3,000 AMPs have been identified by 74 now (Wang, Li & Wang, 2016). Among AMPs, of great interest are human defensins: human 75 neutrophil peptide-1 (HNP-1), human beta-defensin-1 (hBD-1), and human beta-defensin-3 76 (hBD-3), since they have a wide spectrum of antimicrobial activity (Pachón-Ibáñez et al., 2017). 77 Since the outer surface of all bacteria has a negative charge (due to the presence of 78 lipopolysaccharides and/or teichoic acids), positively charged and hydrophobic AMPs (in q ) 64 The human body is in continuous contact with a large number of pathogenic and non-pathogenic 65 microorganisms. In the process of evolution, defense mechanisms have formed that allow first to 66 identify the pathogen and then, if necessary, to exercise adequate control of its further 67 penetration and spread. These tasks are accomplished through the innate immune system which 68 is capable (unlike the adaptive immunity system) of immediately recognizing and destroying 69 infectious agents of various nature (Iwasaki & Medzhitov, 2015). The most important component 70 of innate immunity is antimicrobial peptides (AMPs) with a length of 5 to ~100 amino acid 71 residues. These peptides have a broad spectrum of antimicrobial activity against various 72 infectious agents: bacteria, viruses, fungi and protozoa. Among the six kingdoms (bacteria, 73 archaea, protists, fungi, plants, and animals), more than 3,000 AMPs have been identified by 74 now (Wang, Li & Wang, 2016). Among AMPs, of great interest are human defensins: human 75 neutrophil peptide-1 (HNP-1), human beta-defensin-1 (hBD-1), and human beta-defensin-3 76 (hBD-3), since they have a wide spectrum of antimicrobial activity (Pachón-Ibáñez et al., 2017). Manuscript to be reviewed 39 Rapid and widespread increase in the resistance of microorganisms to antimicrobial drugs is 40 known to present a serious problem and challenge to modern medicine (Roca et al., 2015; Li & 41 Webster, 2018). The threat of increasing antibiotic resistance and methods to combat it are under 42 active discussion at the level of the World Health Organization and the United Nations; in 2016, 43 the "Global action plan to combat antimicrobial resistance" has been published. According to this 44 document, the key objectives to solve this problem are the optimization of the use of 45 antimicrobial drugs, as well as the development of new drugs (Global action plan to combat 46 antimicrobial resistance, 2015). Over the past 10 years, only several new antibacterial drugs have 47 been introduced to the pharmaceutical market (Bassetti et al., 2013; Andrei, Droc & Stefan, 48 2019). An increase in antimicrobial resistance naturally leads to a decrease in the effectiveness of 49 therapy and, as a result, an increase in the duration of treatment, an increase in mortality and 50 financial expenses on treatment (Fair & Tor, 2014; Rolain et al., 2016). For example, 19,000 51 people die annually in the United States from infections caused by methicillin-resistant strains of 52 Staphylococcus aureus (MRSA) (Fischbach & Walsh, 2009), while the annual financial expenses 53 on treatment of this infection comprise $3 billion. According to the latest report from the Centers 54 for Disease Control and Prevention (USA), the financial burden associated with increasing 55 microbial resistance comprises about $55 Billion and 8 Million additional bed days (US CDC, 56 2019). It is estimated that by 2050 more than 10 million people will die annually from infections 57 caused by resistant strains and by that time the global economy will lose about US $100 Trillion 58 due to this problem (O’Neill, 2016). 59 The formation of resistance takes place due to various causes and mechanisms. This is known to 60 be a natural evolutionary process of adaptation of microorganisms to frequent contact with 61 substances possessing antimicrobial properties (Martinez et al., 2009). The wide spread of 62 antibiotic resistance is due to two factors - mutations and horizontal gene transfer (Martinez & 63 Baquero, 2000). q , ) 64 The human body is in continuous contact with a large number of pathogenic and non-pathogenic 65 microorganisms. Manuscript to be reviewed 79 particular, defensins) nonspecifically "accumulate" on the surface of both gram-positive and 80 gram-negative microorganisms. The antibacterial activity of defensins is believed to be related to 81 membrane permeabilization of microorganisms (Kagan et al., 1990; Wimley & Hristova, 2020). 82 However, some AMPs have been found to use alternative mechanisms of antimicrobial action 83 (Matsuzaki et al., 1991; Mor & Nicolas, 1994; Oren & Shai, 1998; Chan, Prenner & Vogel, 84 2006). It has also been shown that HNP-1 can inhibit the synthesis of the bacterial cell wall by 85 binding to precursor lipid II (Leeuw et al., 2010). 86 Unfortunately, the introduction of native AMPs into clinical practice as a monotherapy for 87 bacterial infections has a number of limitations: high synthesis cost, hemolytic activity, 88 cytotoxicity for macroorganism, immunogenicity, and pharmacokinetic specifics (Moravej et al., 89 2018; Lei et al., 2019). To solve these problems, two approaches have been proposed: i) 90 modifying native AMPs (or designing new peptides with antimicrobial activity) (Lei et al., 91 2019), and ii) using native AMPs at low doses in combination with conventional antibiotics 92 (Zharkova et al., 2019). 93 In this work, we investigated the effectiveness of the combined use of human defensins HNP-1, 94 hBD-1, hBD-3 and antibiotics (rifampicin and amikacin) against isolates of Staphylococcus 95 aureus and Escherichia coli collected from hospitalized patients. 96 97 Materials & Methods 98 Peptides and antibiotics 99 We used recombinant AMPs, human defensins HNP-1 (purity ≥ 92%), hBD-1 (purity ≥ 95%), 100 hBD-3 (purity ≥ 98%) (Cloud-Clone, USA), and conventional antibiotics, rifampicin 101 (Belmedpreparaty, Belarus) and amikacin (Sintez, Russia). The amino acid sequences and 102 characteristics of the AMPs used in this work are provided in Table 1. 103 Bacterial isolates 104 Twenty-seven S. aureus isolates and twenty-four E. coli isolates were identified and their 105 antibiotic resistance phenotypes determined at the Department of Clinical Microbiology of the 106 Center of Clinical Pharmacology and Pharmacotherapy (Stavropol, Russia) in accordance with 107 the European Committee on Antimicrobial Susceptibility Testing protocols using the standard 108 disk diffusion test (EUCAST, 2020). The resistance of S. aureus to cefoxitin (with zone diameter 109 breakpoint <22 mm) was considered as a marker of methicillin resistance (EUCAST, 2020). 110 Bacterial strains were collected from patients admitted to the intensive care department of the 111 Stavropol State Regional Clinical Hospital (Russia) in 2020. Manuscript to be reviewed 112 Study of combined antimicrobial action of defensins and conventional antibiotics 113 To determine the minimum inhibitory concentrations of individual substances and to study the 114 combined antimicrobial action of defensins and rifampicin/amikacin, we used the standard 115 checkerboard assay (White et al., 1996; Orhan et al., 2005; Wiegand, Hilpert & Hancock, 2008; 116 Pfaller et al., 2011) modified according to previous work (Bolatchiev et al., 2020). 117 Briefly, pure cultures of bacteria were cultured on solid nutrient media (mannitol salt agar, 118 BioMedia, Russia) for 18-24 h at 37 ºC. A fresh morning culture was used to prepare a saline 79 particular, defensins) nonspecifically "accumulate" on the surface of both gram-positive and 80 gram-negative microorganisms. The antibacterial activity of defensins is believed to be related to 81 membrane permeabilization of microorganisms (Kagan et al., 1990; Wimley & Hristova, 2020). 82 However, some AMPs have been found to use alternative mechanisms of antimicrobial action 83 (Matsuzaki et al., 1991; Mor & Nicolas, 1994; Oren & Shai, 1998; Chan, Prenner & Vogel, 84 2006). It has also been shown that HNP-1 can inhibit the synthesis of the bacterial cell wall by 85 binding to precursor lipid II (Leeuw et al., 2010). 79 particular, defensins) nonspecifically "accumulate" on the surface of both gram-positive and 80 gram-negative microorganisms. The antibacterial activity of defensins is believed to be related to 81 membrane permeabilization of microorganisms (Kagan et al., 1990; Wimley & Hristova, 2020). 82 However, some AMPs have been found to use alternative mechanisms of antimicrobial action 83 (Matsuzaki et al., 1991; Mor & Nicolas, 1994; Oren & Shai, 1998; Chan, Prenner & Vogel, 84 2006). It has also been shown that HNP-1 can inhibit the synthesis of the bacterial cell wall by 85 binding to precursor lipid II (Leeuw et al., 2010). 104 Twenty-seven S. aureus isolates and twenty-four E. coli isolates were identified and their 105 antibiotic resistance phenotypes determined at the Department of Clinical Microbiology of the 106 Center of Clinical Pharmacology and Pharmacotherapy (Stavropol, Russia) in accordance with 107 the European Committee on Antimicrobial Susceptibility Testing protocols using the standard 108 disk diffusion test (EUCAST, 2020). The resistance of S. aureus to cefoxitin (with zone diameter 109 breakpoint <22 mm) was considered as a marker of methicillin resistance (EUCAST, 2020). Manuscript to be reviewed 77 Since the outer surface of all bacteria has a negative charge (due to the presence of 78 lipopolysaccharides and/or teichoic acids), positively charged and hydrophobic AMPs (in PeerJ reviewing PDF | (2020:09:52766:1:0:NEW 20 Oct 2020) Manuscript to be reviewed For greater accuracy of the experiment, a quadruple control was carried out – three wells 127 in each plate contained: 1) control-1, only 2.1% Mueller-Hinton broth (200 μL, without bacteria 128 and without antimicrobial compounds); 2) control-2, inoculum only (200 μL, without 129 antimicrobial compounds); 3) control-3, defensin at a maximum concentration without inoculum 130 (200 μL); 4) control-4, rifampicin/amikacin at a maximum concentration without inoculum (200 131 μL). All antimicrobial compounds were dissolved in 2.1% Mueller-Hinton broth. In all 132 experiments, the concentration range of antimicrobial substances was from 0 to 64 mg/L. 133 Experiments with each of the microorganisms were carried out in at least three replicates. After 134 the introduction of inoculum and antimicrobial substances, the plates were incubated in a 135 thermostat at 37 °C. In 18-20 h, the presence or absence of growth was visually assessed. The 136 minimum inhibitory concentration (MIC) was taken to be the lowest concentration of the test 137 substance at which the growth of microorganisms was visually completely absent (Milly, Toledo 138 & Ramakrishnan, 2005). 139 The combined microbicidal effect of two substances (A and B) was assessed by the fractional 140 inhibitory concentration index (FICI) (Ruden et al., 2009): FICI = (A/MIC A) + (B/MIC B), 141 where A and B are such concentrations of antimicrobial agents in their mixture that inhibit the 142 growth of bacteria; MIC A and MIC B are the minimum inhibitory concentrations of substances 139 The combined microbicidal effect of two substances (A and B) was assessed by the fractional 140 inhibitory concentration index (FICI) (Ruden et al., 2009): FICI = (A/MIC A) + (B/MIC B), 141 h A d B h t ti f ti i bi l t i th i i t th t i hibit th 141 where A and B are such concentrations of antimicrobial agents in their mixture that inhibit the 142 growth of bacteria; MIC A and MIC B are the minimum inhibitory concentrations of substances 143 A and B, respectively, when they are applied separately. Depending on the FICI, there are three 144 types of mutual influence of the two investigated antimicrobials on bacteria: 1) FICI ≤ 0,5 – 145 synergism of action; 2) 0.5 < FICI < 4 – no interaction; 3) FICI > 4 – antagonism (Sengupta et 146 al., 2008). 143 A and B, respectively, when they are applied separately. Manuscript to be reviewed Depending on the FICI, there are three 144 types of mutual influence of the two investigated antimicrobials on bacteria: 1) FICI ≤ 0,5 – 145 synergism of action; 2) 0.5 < FICI < 4 – no interaction; 3) FICI > 4 – antagonism (Sengupta et 146 al., 2008). 147 The final MIC and FICI values were calculated as median values of three independent replicates 148 (for each pair of antimicrobial compounds against each bacterial isolate). 147 The final MIC and FICI values were calculated as median values of three independent replicates 148 (for each pair of antimicrobial compounds against each bacterial isolate). Manuscript to be reviewed 119 suspension with the McFarland turbidity standard of 0.5, i.e. the suspension had the 120 concentration of the corresponding microorganism of approximately 1.5×108 CFU/mL. 0.1 mL 121 of the resulting suspension was diluted in 9.9 mL of 2.1% Mueller-Hinton broth (SIFIN Institut 122 für Immunpräparate und Nährmedien, Germany) to produce an inoculum containing about 123 1.5×105 CFU/mL. Then, the inoculum (100 μL per well) was added to the wells of a sterile 96- 124 well plate with a U-shaped bottom (Medpolymer, Russia). After that, serial two-fold dilutions of 125 two combinations of antimicrobial compounds under study (50 μL each) were introduced into the 126 wells. For greater accuracy of the experiment, a quadruple control was carried out – three wells 127 in each plate contained: 1) control-1, only 2.1% Mueller-Hinton broth (200 μL, without bacteria 128 and without antimicrobial compounds); 2) control-2, inoculum only (200 μL, without 129 antimicrobial compounds); 3) control-3, defensin at a maximum concentration without inoculum 130 (200 μL); 4) control-4, rifampicin/amikacin at a maximum concentration without inoculum (200 131 μL). All antimicrobial compounds were dissolved in 2.1% Mueller-Hinton broth. In all 132 experiments, the concentration range of antimicrobial substances was from 0 to 64 mg/L. 133 Experiments with each of the microorganisms were carried out in at least three replicates. After 134 the introduction of inoculum and antimicrobial substances, the plates were incubated in a 135 thermostat at 37 °C. In 18-20 h, the presence or absence of growth was visually assessed. The 136 minimum inhibitory concentration (MIC) was taken to be the lowest concentration of the test 137 substance at which the growth of microorganisms was visually completely absent (Milly, Toledo 138 & Ramakrishnan, 2005). 119 suspension with the McFarland turbidity standard of 0.5, i.e. the suspension had the 120 concentration of the corresponding microorganism of approximately 1.5×108 CFU/mL. 0.1 mL 121 of the resulting suspension was diluted in 9.9 mL of 2.1% Mueller-Hinton broth (SIFIN Institut 122 für Immunpräparate und Nährmedien, Germany) to produce an inoculum containing about 123 1.5×105 CFU/mL. Then, the inoculum (100 μL per well) was added to the wells of a sterile 96- 124 well plate with a U-shaped bottom (Medpolymer, Russia). After that, serial two-fold dilutions of 125 two combinations of antimicrobial compounds under study (50 μL each) were introduced into the 126 wells. Manuscript to be reviewed 110 Bacterial strains were collected from patients admitted to the intensive care department of the 111 Stavropol State Regional Clinical Hospital (Russia) in 2020. 112 Study of combined antimicrobial action of defensins and conventional antibiotics 113 To determine the minimum inhibitory concentrations of individual substances and to study the 114 combined antimicrobial action of defensins and rifampicin/amikacin, we used the standard 115 checkerboard assay (White et al., 1996; Orhan et al., 2005; Wiegand, Hilpert & Hancock, 2008; 116 Pfaller et al., 2011) modified according to previous work (Bolatchiev et al., 2020). 112 Study of combined antimicrobial action of defensins and conventional antibiotics 113 To determine the minimum inhibitory concentrations of individual substances and to study the 114 combined antimicrobial action of defensins and rifampicin/amikacin, we used the standard 115 checkerboard assay (White et al., 1996; Orhan et al., 2005; Wiegand, Hilpert & Hancock, 2008; 116 Pfaller et al., 2011) modified according to previous work (Bolatchiev et al., 2020). 118 BioMedia, Russia) for 18-24 h at 37 ºC. A fresh morning culture was used to prepare a saline 118 BioMedia, Russia) for 18-24 h at 37 ºC. A fresh morning culture was used to prepare a saline PeerJ reviewing PDF | (2020:09:52766:1:0:NEW 20 Oct 2020) 150 Results 151 All S. aureus isolates tested (n = 27) were susceptible to AMPs and rifampicin (Table 2). The 152 MIC of HNP-1 for the studied staphylococci was 4 (2-8) mg/L (hereinafter, MIC and FICI values 153 are presented as median and interquartile range in brackets). The MIC of hBD-1 was 8 (4-8) 154 mg/L; that of hBD-3 – 1 (0.5-4) mg/L; that of rifampicin – 0.008 (0.004-0.016) mg/L. As can be 155 seen, the highest anti-staphylococcal activity among defensins was demonstrated by hBD-3. 156 The results of MIC studies for E. coli isolates (n = 24) are presented in Table 3. In this case, the 156 The results of MIC studies for E. coli isolates (n = 24) are presented in Table 3. In this case, the 157 most effective AMP also was hBD-3 that had MIC of 4 (4-8) mg/L. The MIC of HNP-1 was 12 PeerJ reviewing PDF | (2020:09:52766:1:0:NEW 20 Oct 2020) Manuscript to be reviewed 158 (4-32) mg/L. hBD-1 was found to be ineffective against 10 out of 24 E. coli isolates; its MIC 159 against susceptible strains was 32 (14-32) mg/L. The MIC of amikacin was 3 (2-4) mg/L. 160 161 We showed that against S. aureus (including MRSA), the combinations of HNP-1 + rifampicin 162 and hBD-3 + rifampicin in most cases demonstrated synergistic effects – the FICI values for both 163 combinations were 0.5 (0.375-0.5) (Table 4). The combination of HNP-1 + rifampicin did not 164 show a synergistic effect against only 3 out of 27 S. aureus isolates (SA-4, SA-6, SA-19). When 165 the combination of hBD-3 + rifampicin was used, the FICI value exceeded 0.5 for three isolates 166 of S. aureus (SA-4, SA-9, SA-21), which indicates the absence of interaction between these 167 substances against these strains. As to the combination of hBD-1 + rifampicin, we showed that 168 only in 3 cases out of 27 there is a synergism of action (against isolates SA-5, SA-13, SA-14, see 169 Table 4), while the median FICI value was 0.75 (0.75-1.25). 170 171 The study of the combined antimicrobial action of defensins with amikacin against E. coli 172 isolates produced similar results. The combinations of HNP-1 + amikacin and hBD-3 + amikacin 173 in most cases demonstrated synergistic action – the FICI values were 0.375 (0.375-0.5) and 0.5 174 (0.375-0.5), respectively (Table 5). The combined use of HNP-1 and amikacin did not show 175 synergy in only 3 cases out of 24 (EC-6, EC-11, EC-13), and the combination of hBD-3 + 176 amikacin – only in 2 cases out of 24 (EC-5, EC-13). The combined use of hBD-1 and amikacin 177 against E. coli isolates did not show a synergistic effect: FICI = 1 (0.75-1.5). Moreover, in 10 178 cases out of 24, it was not possible to calculate the FICI value of this combination of substances, 179 since the MIC of hBD-1 for these 10 isolates was >64 mg/L (Table 5). 180 181 Discussion 182 The results obtained are of interest from several points of view. First, even though studies of the 183 antimicrobial activity of HNP-1, hBD-1 and hBD-3 against S. aureus and E. coli have previously 184 been conducted, a thorough analysis of their MIC and FICI values against a large number of 158 (4-32) mg/L. hBD-1 was found to be ineffective against 10 out of 24 E. Manuscript to be reviewed coli isolates; its MIC 159 against susceptible strains was 32 (14-32) mg/L. The MIC of amikacin was 3 (2-4) mg/L. 160 161 We showed that against S. aureus (including MRSA), the combinations of HNP-1 + rifampicin 162 and hBD-3 + rifampicin in most cases demonstrated synergistic effects – the FICI values for both 163 combinations were 0.5 (0.375-0.5) (Table 4). The combination of HNP-1 + rifampicin did not 164 show a synergistic effect against only 3 out of 27 S. aureus isolates (SA-4, SA-6, SA-19). When 165 the combination of hBD-3 + rifampicin was used, the FICI value exceeded 0.5 for three isolates 166 of S. aureus (SA-4, SA-9, SA-21), which indicates the absence of interaction between these 167 substances against these strains. As to the combination of hBD-1 + rifampicin, we showed that 168 only in 3 cases out of 27 there is a synergism of action (against isolates SA-5, SA-13, SA-14, see 169 Table 4), while the median FICI value was 0.75 (0.75-1.25). 170 171 The study of the combined antimicrobial action of defensins with amikacin against E. coli 172 isolates produced similar results. The combinations of HNP-1 + amikacin and hBD-3 + amikacin 173 in most cases demonstrated synergistic action – the FICI values were 0.375 (0.375-0.5) and 0.5 174 (0.375-0.5), respectively (Table 5). The combined use of HNP-1 and amikacin did not show 175 synergy in only 3 cases out of 24 (EC-6, EC-11, EC-13), and the combination of hBD-3 + 176 amikacin – only in 2 cases out of 24 (EC-5, EC-13). The combined use of hBD-1 and amikacin 177 against E. coli isolates did not show a synergistic effect: FICI = 1 (0.75-1.5). Moreover, in 10 178 cases out of 24, it was not possible to calculate the FICI value of this combination of substances, 179 since the MIC of hBD-1 for these 10 isolates was >64 mg/L (Table 5). 180 181 Discussion 182 The results obtained are of interest from several points of view. First, even though studies of the 183 antimicrobial activity of HNP-1, hBD-1 and hBD-3 against S. aureus and E. coli have previously 184 been conducted, a thorough analysis of their MIC and FICI values against a large number of 185 clinical isolates with heterogeneous antibiotic resistance phenotypes has not been carried out. Manuscript to be reviewed The combined use of HNP-1 and amikacin did not show 175 synergy in only 3 cases out of 24 (EC-6, EC-11, EC-13), and the combination of hBD-3 + 176 amikacin – only in 2 cases out of 24 (EC-5, EC-13). The combined use of hBD-1 and amikacin 177 against E. coli isolates did not show a synergistic effect: FICI = 1 (0.75-1.5). Moreover, in 10 178 cases out of 24, it was not possible to calculate the FICI value of this combination of substances, 179 since the MIC of hBD-1 for these 10 isolates was >64 mg/L (Table 5). 180 181 Discussion 182 The results obtained are of interest from several points of view. First, even though studies of the 158 (4-32) mg/L. hBD-1 was found to be ineffective against 10 out of 24 E. coli isolates; its MIC 159 against susceptible strains was 32 (14-32) mg/L. The MIC of amikacin was 3 (2-4) mg/L. 171 The study of the combined antimicrobial action of defensins with amikacin against E. coli 172 isolates produced similar results. The combinations of HNP-1 + amikacin and hBD-3 + amikacin 173 in most cases demonstrated synergistic action – the FICI values were 0.375 (0.375-0.5) and 0.5 174 (0.375-0.5), respectively (Table 5). The combined use of HNP-1 and amikacin did not show 175 synergy in only 3 cases out of 24 (EC-6, EC-11, EC-13), and the combination of hBD-3 + 176 amikacin – only in 2 cases out of 24 (EC-5, EC-13). The combined use of hBD-1 and amikacin 177 against E. coli isolates did not show a synergistic effect: FICI = 1 (0.75-1.5). Moreover, in 10 178 cases out of 24, it was not possible to calculate the FICI value of this combination of substances, 179 since the MIC of hBD-1 for these 10 isolates was >64 mg/L (Table 5). 180 Manuscript to be reviewed 186 Second, the obtained data can be used to search for and develop new strategies for overcoming 187 resistance to antimicrobial drugs used in clinical practice, since this work shows that, for 188 instance, the MIC values of rifampicin and amikacin decrease by several times when they are 189 used in combination with HNP-1 or hBD-3. 190 191 We showed that antibiotic resistance phenotype (including methicillin resistance) does not affect 192 the sensitivity of the studied bacterial isolates to AMPs (Tables 2 and 3). It can be argued that the 193 mechanism of antimicrobial action of the studied defensins is at least not associated with the 194 targets against which conventional antibiotics are directed. The antimicrobial activity of 195 positively charged defensins is realized when a certain threshold concentration of AMP 196 molecules on the outer surface of the lipid membrane of a bacterial cell is reached, so that the 197 tangential tension is compensated, which ultimately leads to the formation of pores of different 158 (4-32) mg/L. hBD-1 was found to be ineffective against 10 out of 24 E. coli isolates; its MIC 159 against susceptible strains was 32 (14-32) mg/L. The MIC of amikacin was 3 (2-4) mg/L. 160 161 We showed that against S. aureus (including MRSA), the combinations of HNP-1 + rifampicin 162 and hBD-3 + rifampicin in most cases demonstrated synergistic effects – the FICI values for both 163 combinations were 0.5 (0.375-0.5) (Table 4). The combination of HNP-1 + rifampicin did not 164 show a synergistic effect against only 3 out of 27 S. aureus isolates (SA-4, SA-6, SA-19). When 165 the combination of hBD-3 + rifampicin was used, the FICI value exceeded 0.5 for three isolates 166 of S. aureus (SA-4, SA-9, SA-21), which indicates the absence of interaction between these 167 substances against these strains. As to the combination of hBD-1 + rifampicin, we showed that 168 only in 3 cases out of 27 there is a synergism of action (against isolates SA-5, SA-13, SA-14, see 169 Table 4), while the median FICI value was 0.75 (0.75-1.25). 170 171 The study of the combined antimicrobial action of defensins with amikacin against E. coli 172 isolates produced similar results. The combinations of HNP-1 + amikacin and hBD-3 + amikacin 173 in most cases demonstrated synergistic action – the FICI values were 0.375 (0.375-0.5) and 0.5 174 (0.375-0.5), respectively (Table 5). Manuscript to be reviewed 198 structure (Sengupta et al., 2008). The differences in MIC values between different isolates of the 199 same species may be due to differences in the structures of their cell walls. 198 structure (Sengupta et al., 2008). The differences in MIC values between different isolates of the 199 same species may be due to differences in the structures of their cell walls. 200 201 In this work, we did not study the activity of defensins at concentrations above 64 mg/L; there is 202 no need to carry out MIC analysis at such high concentrations, since the use of AMPs in practice 203 has a number of limitations. Implementation of AMPs is complicated by the fact that they are 204 rapidly degraded by peptidases (Steckbeck, Deslouches & Montelaro, 2014). This leads to their 205 short duration of action and significantly affects the pharmacokinetics. Moreover, AMPs can 206 have a cytotoxic effect on eukaryotic cells and cause hemolysis (Matsuzaki, 2009; Takahashi et 207 al., 2010). Another problem with the large-scale use of AMPs is the high cost of their production 208 (Pachón-Ibáñez et al., 2017). To solve these problems, several strategies have been proposed: 209 modification of AMPs or creation of new peptides (with a short amino acid sequence) (Pachón- 210 Ibáñez et al., 2017), stimulation of the production of endogenous AMPs by administration of low 211 molecular weight compounds (Chen et al., 2020), implementation of low doses of AMPs to 212 enhance the antimicrobial activity of conventional antibiotics (Zharkova et al., 2019). 213 214 The effectiveness of AMPs significantly varies in different studies and against different strains of 215 the same species (Ganz et al., 1985; Turner et al., 1998; Schröder, 1999; (Ganz et al., 1985; 216 Turner et al., 1998; Yang et al., 1999; Sahly et al., 2003; Dürr, Sudheendra & Ramamoorthy, 217 2006; Wilmes et al., 2011; Xhindoli et al., 2016). It should be noted that there is still no standard 218 that defines control points (criteria) of susceptibility or resistance of certain species of bacteria to 219 a specific AMP. Therefore, it is necessary to conduct studies of the MIC and FICI values against 220 a large number of clinical isolates. 221 222 Earlier studies by other groups have shown that some natural and novel synthetic AMPs can 223 exhibit synergistic effects in combination with aminoglycosides or rifampicin (Pollini et al., 224 2017; Wu et al., 2017). 181 Discussion 182 The results obtained are of interest from several points of view. First, even though studies of the 183 antimicrobial activity of HNP-1, hBD-1 and hBD-3 against S. aureus and E. coli have previously 184 been conducted, a thorough analysis of their MIC and FICI values against a large number of 185 clinical isolates with heterogeneous antibiotic resistance phenotypes has not been carried out. 186 Second, the obtained data can be used to search for and develop new strategies for overcoming 187 resistance to antimicrobial drugs used in clinical practice, since this work shows that, for 188 instance, the MIC values of rifampicin and amikacin decrease by several times when they are 189 used in combination with HNP-1 or hBD-3. 190 191 We showed that antibiotic resistance phenotype (including methicillin resistance) does not affect 192 the sensitivity of the studied bacterial isolates to AMPs (Tables 2 and 3). It can be argued that the 193 mechanism of antimicrobial action of the studied defensins is at least not associated with the 194 targets against which conventional antibiotics are directed. The antimicrobial activity of 195 positively charged defensins is realized when a certain threshold concentration of AMP 196 molecules on the outer surface of the lipid membrane of a bacterial cell is reached, so that the 197 tangential tension is compensated, which ultimately leads to the formation of pores of different 182 The results obtained are of interest from several points of view. First, even though studies of the 183 antimicrobial activity of HNP-1, hBD-1 and hBD-3 against S. aureus and E. coli have previously 184 been conducted, a thorough analysis of their MIC and FICI values against a large number of 185 clinical isolates with heterogeneous antibiotic resistance phenotypes has not been carried out. 186 Second, the obtained data can be used to search for and develop new strategies for overcoming 187 resistance to antimicrobial drugs used in clinical practice, since this work shows that, for 188 instance, the MIC values of rifampicin and amikacin decrease by several times when they are 189 used in combination with HNP-1 or hBD-3. PeerJ reviewing PDF | (2020:09:52766:1:0:NEW 20 Oct 2020) Manuscript to be reviewed 238 combinations of AMPs with antibiotics to 239 would require studies with reference strai 240 number of appropriate clinical isolates. 241 242 It has previously been shown that hBD-3 243 bacterial growth, regulation of inflammat 244 general, the effects of AMPs in vivo are v 245 2020) to the ability to neutralize the letha 246 Defensins can be considered as an effecti 247 (Colavita et al., 2015), since AMPs direct 248 release of pro-inflammatory cytokines, an 249 immune response (Suarez-Carmona et al. 250 should be assessed in in vivo experimenta 251 252 Thinking about further strategies for usin 253 resistance, we suggest that one of the app 254 the search for ways to produce endogenou 255 weight compounds or viral vectors encod 256 conventional antibiotics. On the one hand 257 antibacterial drugs, and on the other hand 258 cheaper way of application of AMPs. 259 260 Conclusions 261 Thus, in this work, we investigated the an 262 and hBD-3 against clinical isolates of S. a 263 defensins, HNP-1 and hBD-3 were the m 264 showed a synergistic effect against most 265 rifampicin and amikacin. 266 Acknowledgements 267 Many thanks to Professor Vladimir Batur 268 Thanks to Dr. Elena Kunitsina for 269 270 directorship of Stavropol State Medical 271 272 Vladimir Koshel and the vice-rector 273 274 excellent facilities for research. 275 276 References 277 Andrei S, Droc G, Stefan G. 2019. FDA a 278 7:e102. DOI: 10.15190/d.2019.15. 279 Bassetti M, Merelli M, Temperoni C, Ast 280 we? Annals of Clinical Microbiology and PeerJ reviewing PDF | (2020:09:52766:1:0:NEW 20 O 238 combinations of AMPs with antibiotics to which the bacteria have acquired resistance. This 239 would require studies with reference strains, followed by verification with respect to a large 240 number of appropriate clinical isolates. 241 242 It has previously been shown that hBD-3 can effectively combat MRSA biofilms by suppressing 243 bacterial growth, regulation of inflammation and immune responses in vivo (Zhu et al., 2017). In 244 general, the effects of AMPs in vivo are very diverse: from wound healing (Bolatchiev et al., 245 2020) to the ability to neutralize the lethal toxin of the anthrax pathogen (Kim et al., 2005). Manuscript to be reviewed The mechanism underlying the synergistic action of HNP-1 / hBD-3 with 225 rifampicin and amikacin is most likely to be related to the fact that AMPs facilitate the 226 penetration of antibiotics into cells (Zharkova et al., 2019). Zharkova et al. have shown that often 227 there is synergy between highly active AMPs targeting membranes (for example, protegrin 1, 228 hBD-3) and antibiotics with intracellular targets (for example, gentamicin, rifampicin), which 229 suggests an increase in bioavailability as the main model of such interaction (Zharkova et al., 230 2019). 231 232 The implementation of low doses of AMPs can reduce the MICs of some antibiotics, which has 233 been shown in numerous studies. For instance, the combination of hBD-3 and methicillin 234 demonstrates a synergistic effect against clinical strains of MRSA with FICI values in the range 235 of 0.09-0.45 (Midorikawa et al., 2003). This is very interesting because the use of methicillin 236 alone is not effective against MRSA (EUCAST, 2020), thus, hBD-3 can help overcome the 237 resistance of MRSA to beta-lactam antibiotics. Similar results can be obtained for other PeerJ reviewing PDF | (2020:09:52766:1:0:NEW 20 Oct 2020) Manuscript to be reviewed 241 242 It has previously been shown that hBD-3 can effectively combat MRSA biofilms by suppressing 243 bacterial growth, regulation of inflammation and immune responses in vivo (Zhu et al., 2017). In 244 general, the effects of AMPs in vivo are very diverse: from wound healing (Bolatchiev et al., 245 2020) to the ability to neutralize the lethal toxin of the anthrax pathogen (Kim et al., 2005). 246 Defensins can be considered as an effective link between innate and adaptive immune responses 247 (Colavita et al., 2015), since AMPs directly stimulate the migration of immune cells, promote the 248 release of pro-inflammatory cytokines, and activate antigen-presenting cells through the Th1 249 immune response (Suarez-Carmona et al., 2015). Thus, it is obvious that synergistic effects 250 should be assessed in in vivo experimental models. 251 252 Thinking about further strategies for using these defensins to solve the problem of antibiotic 253 resistance, we suggest that one of the approaches to future clinical applications of AMPs may be 254 the search for ways to produce endogenous AMPs (for instance, by introducing low molecular 255 weight compounds or viral vectors encoding peptide sequences) in combination with 256 conventional antibiotics. On the one hand, this strategy can help to increase the effectiveness of 257 antibacterial drugs, and on the other hand, the stimulation of endogenous AMPs is a much 258 cheaper way of application of AMPs. 259 260 Conclusions 261 Thus, in this work, we investigated the antimicrobial activity of human defensins HNP-1, hBD-1, 262 and hBD-3 against clinical isolates of S. aureus (n = 27) and E. coli (n = 24). Among the studied 263 defensins, HNP-1 and hBD-3 were the most effective. Moreover, these antimicrobial peptides 264 showed a synergistic effect against most of the studied isolates when applied together with 265 rifampicin and amikacin. 266 Acknowledgements 267 Many thanks to Professor Vladimir Baturin for constructive comments about the manuscript. 268 Thanks to Dr. Elena Kunitsina for 269 providing bacterial strains. Big thanks to the 270 directorship of Stavropol State Medical 271 University represented by the rector Professor 272 Vladimir Koshel and the vice-rector 273 Professor Evgeny Shchetinin for providing 274 excellent facilities for research. 275 238 combinations of AMPs with antibiotics to which the bacteria have acquired resistance. This 239 would require studies with reference strains, followed by verification with respect to a large 240 number of appropriate clinical isolates. Manuscript to be reviewed 246 Defensins can be considered as an effective link between innate and adaptive immune responses 247 (Colavita et al., 2015), since AMPs directly stimulate the migration of immune cells, promote the 248 release of pro-inflammatory cytokines, and activate antigen-presenting cells through the Th1 249 immune response (Suarez-Carmona et al., 2015). Thus, it is obvious that synergistic effects 250 should be assessed in in vivo experimental models. 251 252 Thinking about further strategies for using these defensins to solve the problem of antibiotic 253 resistance, we suggest that one of the approaches to future clinical applications of AMPs may be 254 the search for ways to produce endogenous AMPs (for instance, by introducing low molecular 255 weight compounds or viral vectors encoding peptide sequences) in combination with 256 conventional antibiotics. On the one hand, this strategy can help to increase the effectiveness of 257 antibacterial drugs, and on the other hand, the stimulation of endogenous AMPs is a much 258 cheaper way of application of AMPs. 259 260 Conclusions 261 Thus, in this work, we investigated the antimicrobial activity of human defensins HNP-1, hBD-1, 262 and hBD-3 against clinical isolates of S. aureus (n = 27) and E. coli (n = 24). Among the studied 263 defensins, HNP-1 and hBD-3 were the most effective. Moreover, these antimicrobial peptides 264 showed a synergistic effect against most of the studied isolates when applied together with 265 rifampicin and amikacin. 266 Acknowledgements 267 Many thanks to Professor Vladimir Baturin for constructive comments about the manuscript. 268 Thanks to Dr. Elena Kunitsina for 269 providing bacterial strains. Big thanks to the 270 directorship of Stavropol State Medical 271 University represented by the rector Professor 272 Vladimir Koshel and the vice-rector 273 Professor Evgeny Shchetinin for providing 274 excellent facilities for research. 275 276 References 277 Andrei S, Droc G, Stefan G. 2019. FDA approved antibacterial drugs: 2018-2019. Discoveries 278 7:e102. DOI: 10.15190/d.2019.15. 279 Bassetti M, Merelli M, Temperoni C, Astilean A. 2013. New antibiotics for bad bugs: where are 280 we? Annals of Clinical Microbiology and Antimicrobials 12:22. DOI: 10.1186/1476-0711-12-22. 238 combinations of AMPs with antibiotics to which the bacteria have acquired resistance. This 239 would require studies with reference strains, followed by verification with respect to a large 240 number of appropriate clinical isolates. Manuscript to be reviewed 281 Bolatchiev A, Baturin V, Bazikov I, Maltsev A, Kunitsina E. 2020. Effect of antimicrobial 282 peptides HNP-1 and hBD-1 on Staphylococcus aureus strains in vitro and in vivo. Fundamental 283 and Clinical Pharmacology 34:102–108. DOI: 10.1111/fcp.12499. 281 Bolatchiev A, Baturin V, Bazikov I, Maltsev A, Kunitsina E. 2020. Effect o , , , , 282 peptides HNP-1 and hBD-1 on Staphylococcus aureus strains in vitro and in vivo. Fundamental 283 and Clinical Pharmacology 34:102–108. DOI: 10.1111/fcp.12499. 284 Chan DI, Prenner EJ, Vogel HJ. 2006. Tryptophan- and arginine-rich antimicrobial peptides: 285 structures and mechanisms of action. Biochimica et Biophysica Acta 1758:1184–1202. DOI: 286 10.1016/j.bbamem.2006.04.006. , , g yp p g p p 285 structures and mechanisms of action. Biochimica et Biophysica Acta 1758:1184–1202. DOI: 286 10 1016/j bbamem 2006 04 006 287 Chen J, Zhai Z, Long H, Yang G, Deng B, Deng J. 2020. Inducible expression of defensins and 288 cathelicidins by nutrients and associated regulatory mechanisms. Peptides 123. DOI: 289 10.1016/j.peptides.2019.170177. 287 Chen J, Zhai Z, Long H, Yang G, Deng B, Deng J. 2020. Inducible expression of defensins and 288 cathelicidins by nutrients and associated regulatory mechanisms. Peptides 123. DOI: 289 10 1016/j id 2019 170177 , , g , g , g , g p 288 cathelicidins by nutrients and associated regulatory mechanisms. Peptides 123. DOI: 290 Colavita I, Nigro E, Sarnataro D, Scudiero O, Granata V, Daniele A, Zagari A, Pessi A, 291 Salvatore F. 2015. Membrane protein 4F2/CD98 is a cell surface receptor involved in the 292 internalization and trafficking of human β-defensin 3 in epithelial cells. Chemistry and Biology 293 22. DOI: 10.1016/j.chembiol.2014.11.020. 291 Salvatore F. 2015. Membrane protein 4F2/CD98 is a cell surface receptor i 291 Salvatore F. 2015. Membrane protein 4F2/CD98 is a cell surface receptor involved in the 292 internalization and trafficking of human β-defensin 3 in epithelial cells. Chemistry and Biology 293 22. DOI: 10.1016/j.chembiol.2014.11.020. 294 Dürr UHN, Sudheendra US, Ramamoorthy A. 2006. LL-37, the only human member of the 295 cathelicidin family of antimicrobial peptides. Biochimica et Biophysica Acta - Biomembranes 296 1758:1408–1425. DOI: 10.1016/j.bbamem.2006.03.030. 297 European Committee on Antimicrobial. 2020. The European Committee on Antimicrobial 298 Susceptibility Testing. Breakpoint tables for interpretation of MICs and zone diameters. Version 299 10.0, 2020. http://www.eucast.org. Breakpoint tables for interpretation of MICs and zone 300 diameters. Version 10.0 10.0. 297 European Committee on Antimicrobial. 2020. 260 Conclusions 261 Thus, in this work, we investigated the antimicrobial activity of human defensins HNP-1, hBD-1, 262 and hBD-3 against clinical isolates of S. aureus (n = 27) and E. coli (n = 24). Among the studied 263 defensins, HNP-1 and hBD-3 were the most effective. Moreover, these antimicrobial peptides 264 showed a synergistic effect against most of the studied isolates when applied together with 265 rifampicin and amikacin. 261 Thus, in this work, we investigated the antimicrobial activity of human defensins HNP-1, hBD-1, 262 and hBD-3 against clinical isolates of S. aureus (n = 27) and E. coli (n = 24). Among the studied 263 defensins, HNP-1 and hBD-3 were the most effective. Moreover, these antimicrobial peptides 264 showed a synergistic effect against most of the studied isolates when applied together with 265 rifampicin and amikacin. 266 Acknowledgements 267 Many thanks to Professor Vladimir Baturin for constructive comments about the manuscript. 268 Thanks to Dr. Elena Kunitsina for 269 providing bacterial strains. Big thanks to the 270 directorship of Stavropol State Medical 271 University represented by the rector Professor 272 Vladimir Koshel and the vice-rector 273 Professor Evgeny Shchetinin for providing 274 excellent facilities for research. 275 276 References 277 Andrei S, Droc G, Stefan G. 2019. FDA approved antibacterial drugs: 2018-2019. Discoveries 278 7:e102. DOI: 10.15190/d.2019.15. 279 Bassetti M, Merelli M, Temperoni C, Astilean A. 2013. New antibiotics for bad bugs: where are 280 we? Annals of Clinical Microbiology and Antimicrobials 12:22. DOI: 10.1186/1476-0711-12-22. PeerJ reviewing PDF | (2020:09:52766:1:0:NEW 20 Oct 2020) Manuscript to be reviewed 318 against its fatal consequences. Proceedings of the National Academy of Sciences of the United 319 States of America 102:4830–4835. DOI: 10.1073/pnas.0500508102. 318 against its fatal consequences. Proceedings of the National Academy of Sci 318 against its fatal consequences. Proceedings of the National Academy of Sciences of the United 319 States of America 102:4830–4835. DOI: 10.1073/pnas.0500508102. 319 States of America 102:4830–4835. DOI: 10.1073/pnas.0500508102. 320 Leeuw E de, Li CC, Zeng P, Li CC, Buin MD de, Lu WYW, Breukink E, Lu WYW. 2010. 321 Functional interaction of human neutrophil peptide-1 with the cell wall precursor lipid II. FEBS 322 L 584 1543 1548 DOI 10 1016/j f b l 2010 03 004 320 Leeuw E de, Li CC, Zeng P, Li CC, Buin MD de, Lu WYW, Breukink E, Lu WYW. 2010. 321 Functional interaction of human neutrophil peptide-1 with the cell wall precursor lipid II. FEBS 322 Letters 584:1543–1548. DOI: 10.1016/j.febslet.2010.03.004. 321 Functional interaction of human neutrophil peptide-1 with the cell wall precursor lipid II. FEBS 322 Letters 584:1543–1548. DOI: 10.1016/j.febslet.2010.03.004. 323 Lei J, Sun LC, Huang S, Zhu C, Li P, He J, Mackey V, Coy DH, He QY. 2019. The 324 antimicrobial peptides and their potential clinical applications. American Journal of 325 Translational Research 11. 326 Li B, Webster TJ. 2018. Bacteria antibiotic resistance: New challenges and opportunities for 327 implant-associated orthopedic infections. Journal of Orthopaedic Research 36. DOI: 328 10.1002/jor.23656. 329 Martinez JL, Baquero F. 2000. Mutation frequencies and antibiotic resistance. Antimicrobial 330 Agents and Chemotherapy 44:1771–1777. DOI: 10.1128/AAC.44.7.1771-1777.2000. 329 Martinez JL, Baquero F. 2000. Mutation frequencies and antibiotic resistance. Antimicrobial 330 A d Ch h 44 1771 1777 DOI 10 1128/AAC 44 7 1771 1777 2000 331 Martinez JL, Fajardo A, Garmendia L, Hernandez A, Linares JF, Martínez-Solano L, Sánchez 332 MB. 2009. A global view of antibiotic resistance. FEMS Microbiology Reviews 33:44–65. DOI: 333 10.1111/j.1574-6976.2008.00142.x. 334 Matsuzaki K. 2009. Control of cell selectivity of antimicrobial peptides. Biochimica et 335 Biophysica Acta - Biomembranes 1788. DOI: 10.1016/j.bbamem.2008.09.013. 336 Matsuzaki K, Shioyama T, Okamura E, Umemura J, Takenaka T, Takaishi Y, Fujita T, Miyajima 337 K. 1991. A comparative study on interactions of a-aminoisobutyric acid containing antibiotic 338 peptides, trichopolyn I and hypelcin A with phosphatidylcholine bilayers. Biochim. Biophys. 339 Acta 1070:419–428. Manuscript to be reviewed The European Committee on 298 Susceptibility Testing. Breakpoint tables for interpretation of MICs and zone diameters. Version 299 10.0, 2020. http://www.eucast.org. Breakpoint tables for interpretation of MICs and zone 300 diameters. Version 10.0 10.0. 301 Fair RJ, Tor Y. 2014. Antibiotics and bacterial resistance in the 21st century. Perspectives in 302 medicinal chemistry 6:25–64. DOI: 10.4137/PMC.S14459. 303 Fischbach MA, Walsh CT. 2009. Antibiotics for Emerging Pathogens. Science 325:1089–1093. 304 DOI: 10.1126/science.1176667. 305 Ganz T, Selsted ME, Szklarek D, Harwig SS, Daher K, Bainton DF, Lehrer RI. 1985. Defensins. 306 Natural peptide antibiotics of human neutrophils. Journal of clinical investigation 76:1427–1435. 307 DOI: 10.1172/JCI112120. 308 Global Action Plan on Antimicrobial Resistance. 2015. Microbe Magazine 10:354–355. DOI: 309 10.1128/microbe.10.354.1. 310 Iwasaki A, Medzhitov R. 2015. Control of adaptive immunity by the innate immune system. 311 Nature Immunology 16:343–353. DOI: 10.1038/ni.3123. 312 Kagan BL, Selsted ME, Ganz T, Lehrer RI. 1990. Antimicrobial defensin peptides form voltage- 313 dependent ion-permeable channels in planar lipid bilayer membranes. Proceedings of the 314 National Academy of Sciences of the United States of America 87:210–214. DOI: 315 10.1073/pnas.87.1.210. 316 Kim C, Gajendran N, Mittrücker H-W, Weiwad M, Song Y-H, Hurwitz R, Wilmanns M, Fischer 316 Kim C, Gajendran N, Mittrücker H-W, Weiwad M, Song Y-H, Hurwitz R, Wilmanns M, Fischer 317 G, Kaufmann SHE. 2005. Human alpha-defensins neutralize anthrax lethal toxin and protect , j , , , g , , , 317 G, Kaufmann SHE. 2005. Human alpha-defensins neutralize anthrax lethal toxin and protect 17 G, Kaufmann SHE. 2005. Human alpha-defensins neutralize anthrax lethal tox PeerJ reviewing PDF | (2020:09:52766:1:0:NEW 20 Oct 2020) Manuscript to be reviewed 54 Oren Z, Shai Y. 1998. Mode of action of linear amphipathic α-helical antimicr 354 Oren Z, Shai Y. 1998. Mode of action of linear amphipathic α-helical antimicrobial peptides. 355 Biopolymers 47:451–463. DOI: 10.1002/(SICI)1097-0282(1998)47:6<451::AID- 356 BIP4>3 0 CO;2-F 355 Biopolymers 47:451–463. DOI: 10.1002/(SICI)1097-0282(1998)47:6<451::AID- 356 BIP4>3.0.CO;2-F. 355 Biopolymers 47:451–463. DOI: 10.1002/(SICI)1097-0282(1998)47:6<451::AID- 356 BIP4 3 0 CO 2 F 357 Orhan G, Bayram A, Zer Y, Balci I. 2005. Synergy tests by E test and checkerboard methods of 358 antimicrobial combinations against Brucella melitensis. Journal of Clinical Microbiology 359 43:140–143. DOI: 10.1128/JCM.43.1.140-143.2005. 360 Pachón-Ibáñez ME, Smani Y, Pachón J, Sánchez-Céspedes J. 2017. Perspectives for clinical use 361 of engineered human host defense antimicrobial peptides. FEMS Microbiology Reviews 41. DOI: 362 10.1093/femsre/fux012. 360 Pachón-Ibáñez ME, Smani Y, Pachón J, Sánchez-Céspedes J. 2017. Perspectives for clinical use 361 of engineered human host defense antimicrobial peptides. FEMS Microbiology Reviews 41. DOI: 362 10 1093/femsre/f 012 , , , p p 361 of engineered human host defense antimicrobial peptides. FEMS Microbiology Reviews 41. DOI: 363 Pfaller MA, Espinel-Ingroff A, Boyken L, Hollis RJ, Kroeger J, Messer SA, Tendolkar S, 364 Diekema DJ. 2011. Comparison of the broth microdilution (BMD) method of the European 365 Committee on Antimicrobial Susceptibility Testing with the 24-hour CLSI BMD method for 366 testing susceptibility of Candida species to fluconazole, posaconazole, and voriconazole by use 367 of ep. Journal of Clinical Microbiology 49:845–850. DOI: 10.1128/JCM.02441-10. 364 Diekema DJ. 2011. Comparison of the broth microdilution (BMD) method of the European 64 Diekema DJ. 2011. Comparison of the broth microdilution (BMD) method of 365 Committee on Antimicrobial Susceptibility Testing with the 24-hour CLSI BMD method for 366 testing susceptibility of Candida species to fluconazole, posaconazole, and voriconazole by use 367 of ep. Journal of Clinical Microbiology 49:845–850. DOI: 10.1128/JCM.02441-10. 368 Pollini S, Brunetti J, Sennati S, Rossolini GM, Bracci L, Pini A, Falciani C. 2017. Synergistic 369 activity profile of an antimicrobial peptide against multidrug-resistant and extensively drug- 370 resistant strains of Gram-negative bacterial pathogens. Journal of Peptide Science 23. DOI: 371 10.1002/psc.2978. 372 Roca I, Akova M, Baquero F, Carlet J, Cavaleri M, Coenen S, Cohen J, Findlay D, Gyssens I, 373 Heure OE, Kahlmeter G, Kruse H, Laxminarayan R, Liébana E, López-Cerero L, MacGowan A, 374 Martins M, Rodríguez-Baño J, Rolain JM, Segovia C, Sigauque B, Taconelli E, Wellington E, 375 Vila J. 2015. Manuscript to be reviewed 340 Midorikawa K, Ouhara K, Komatsuzawa H, Kawai T, Yamada S, Fujiwara T, Yamazaki K, 341 Sayama K, Taubman MA, Kurihara H, Hashimoto K, Sugai M. 2003. Staphylococcus aureus 342 susceptibility to innate antimicrobial peptides, β-defensins and CAP18, expressed by human 343 keratinocytes. Infection and Immunity 71. DOI: 10.1128/IAI.71.7.3730-3739.2003. 344 Milly PJ, Toledo RT, Ramakrishnan S. 2005. Determination of minimum inhibitory 345 concentration of liquid smoke fractions. Journal of Food Science 70:5–16. DOI: 10.1111/j.1365- 346 2621.2005.tb09040.x. 347 Moravej H, Moravej Z, Yazdanparast M, Heiat M, Mirhosseini A, Moosazadeh Moghaddam M, 348 Mirnejad R 2018 Antimicrobial Peptides: Features Action and Their Resistance Mechanisms 347 Moravej H, Moravej Z, Yazdanparast M, Heiat M, Mirhosseini A, Moosazadeh Moghaddam M, 348 Mirnejad R. 2018. Antimicrobial Peptides: Features, Action, and Their Resistance Mechanisms 349 in Bacteria. Microbial Drug Resistance 24. DOI: 10.1089/mdr.2017.0392. 350 Mor A, Nicolas P. 1994. The NH2-terminal alpha-helical domain 1-18 of dermaseptin is 351 responsible for antimicrobial activity. Journal of Biological Chemistry 269:1934–1939. 352 O’Neill Jim. 2016. Review on Antimicrobial Resistance. Tackling drug-resistant infections 353 globally. WHO. PeerJ reviewing PDF | (2020:09:52766:1:0:NEW 20 Oct 2020) Manuscript to be reviewed The global threat of antimicrobial resistance: Science for intervention. New 376 Microbes and New Infections 6:22–29. DOI: 10.1016/j.nmni.2015.02.007. 372 Roca I, Akova M, Baquero F, Carlet J, Cavaleri M, Coenen S, Cohen J, Findlay D, Gyssens I, 73 Heure OE, Kahlmeter G, Kruse H, Laxminarayan R, Liébana E, López-Cerero 374 Martins M, Rodríguez-Baño J, Rolain JM, Segovia C, Sigauque B, Taconelli E, Wellington E, 375 Vila J. 2015. The global threat of antimicrobial resistance: Science for intervention. New 376 Microbes and New Infections 6:22–29. DOI: 10.1016/j.nmni.2015.02.007. 74 Martins M, Rodríguez-Baño J, Rolain JM, Segovia C, Sigauque B, Taconelli 375 Vila J. 2015. The global threat of antimicrobial resistance: Science for intervention. New 375 Vila J. 2015. The global threat of antimicrobial resistance: Science for intervention. New 376 Microbes and New Infections 6:22–29. DOI: 10.1016/j.nmni.2015.02.007. 377 Rolain J-M, Abat C, Jimeno M-T, Fournier P-E, Raoult D. 2016. Do we need new antibiotics? 378 Clinical microbiology and infection : the official publication of the European Society of Clinical 379 Microbiology and Infectious Diseases 22:408–415. DOI: 10.1016/j.cmi.2016.03.012. 377 Rolain J M, Abat C, Jimeno M T, Fournier P E, Raoult D. 2016. Do we need new antibiotics? 378 Clinical microbiology and infection : the official publication of the European Society of Clinical 379 Microbiology and Infectious Diseases 22:408 415 DOI: 10 1016/j cmi 2016 03 012 380 Ruden S, Hilpert K, Berditsch M, Wadhwani P, Ulrich AS. 2009. Synergistic interaction 381 between silver nanoparticles and membrane-permeabilizing antimicrobial peptides. 382 Antimicrobial Agents and Chemotherapy 53:3538–3540. DOI: 10.1128/AAC.01106-08. 380 Ruden S, Hilpert K, Berditsch M, Wadhwani P, Ulrich AS. 2009. Synergistic interaction 381 between silver nanoparticles and membrane-permeabilizing antimicrobial peptides. 382 A ti i bi l A t d Ch th 53 3538 3540 DOI 10 1128/AAC 01106 08 383 Sahly H, Schubert S, Harder J, Rautenberg P, Ullmann U, Schröder J, Podschun R. 2003. 384 Burkholderia is highly resistant to human beta-defensin 3. Antimicrobial Agents and 385 Chemotherapy 47:1739–1741. DOI: 10.1128/AAC.47.5.1739-1741.2003. y , , , g , , , 384 Burkholderia is highly resistant to human beta-defensin 3. Antimicrobial Agents and 385 Chemotherapy 47:1739–1741. DOI: 10.1128/AAC.47.5.1739-1741.2003. 386 Sengupta D, Leontiadou H, Mark AE, Marrink SJ. 2008. Toroidal pores formed by antimicrobial 387 peptides show significant disorder. Biochimica et Biophysica Acta - Biomembranes 1778:2308– 388 2317. DOI: 10.1016/j.bbamem.2008.06.007. 389 Steckbeck JD, Deslouches B, Montelaro RC. 2014. Antimicrobial peptides: new drugs for bad 390 bugs? Manuscript to be reviewed 391 Suarez-Carmona M, Hubert P, Delvenne P, Herfs M. 2015. Defensins: “Simple” antimicrobial 392 peptides or broad-spectrum molecules? Cytokine and Growth Factor Reviews 26. DOI: 393 10.1016/j.cytogfr.2014.12.005. 391 Suarez-Carmona M, Hubert P, Delvenne P, Herfs M. 2015. Defensins: “Sim 392 peptides or broad-spectrum molecules? Cytokine and Growth Factor Reviews 26. DOI: 393 10.1016/j.cytogfr.2014.12.005. 392 peptides or broad-spectrum molecules? Cytokine and Growth Factor Reviews 26. DOI: 393 10 1016/j f 2014 12 005 394 Takahashi D, Shukla SK, Prakash O, Zhang G. 2010. Structural determinants of host defense 395 peptides for antimicrobial activity and target cell selectivity. Biochimie 92. DOI: 396 10.1016/j.biochi.2010.02.023. , , , g 395 peptides for antimicrobial activity and target cell selectivity. Biochimie 92. DOI: 396 10 1016/j biochi 2010 02 023 397 Turner J, Cho Y, Dinh NN, Waring AJ, Lehrer RI. 1998. Activities of LL-37, a cathelin- 398 associated antimicrobial peptide of human neutrophils. Antimicrobial Agents and Chemotherapy 399 42:2206–2214. DOI: 10.1128/aac.42.9.2206. 400 US CDC. 2019. Antibiotic resistance threats in the United States. Centers for Disease Control 401 and Prevention. 402 Wang G, Li X, Wang Z. 2016. APD3: The antimicrobial peptide database as a tool for research 403 and education. Nucleic Acids Research 44:D1087–D1093. DOI: 10.1093/nar/gkv1278. 404 White RL, Burgess DS, Manduru M, Bosso JA. 1996. Comparison of three different in vitro 405 methods of detecting synergy: Time-kill, checkerboard, and E test. Antimicrobial Agents and 406 Chemotherapy 40:1914–1918. 407 Wiegand I, Hilpert K, Hancock REW. 2008. Agar and broth dilution methods to determine the 408 minimal inhibitory concentration (MIC) of antimicrobial substances. Nature Protocols 3. DOI: 409 10.1038/nprot.2007.521. 410 Wilmes M, Cammue BPA, Sahl HG, Thevissen K. 2011. Antibiotic activities of host defense 411 peptides: More to it than lipid bilayer perturbation. Natural Product Reports 28:1350–1358. 412 DOI: 10.1039/c1np00022e. 410 Wilmes M, Cammue BPA, Sahl HG, Thevissen K. 2011. Antibiotic activities of host defense 411 peptides: More to it than lipid bilayer perturbation. Natural Product Reports 28:1350–1358. 412 DOI: 10 1039/c1np00022e 413 Wimley WC, Hristova K. 2020. The Mechanism of Membrane Permeabilization by Peptides: 414 Still an Enigma. Australian Journal of Chemistry 73. DOI: 10.1071/CH19449. 415 Wu X, Li Z, Li X, Tian Y, Fan Y, Yu C, Zhou B, Liu Y, Xiang R, Yang L. 2017. Synergistic 416 effects of antimicrobial peptide DP7 combined with antibiotics against multidrug-resistant 417 bacteria. Drug Design, Development and Therapy 11. DOI: 10.2147/DDDT.S107195. Manuscript to be reviewed Expert Opinion on Biological Therapy 14:11–14. DOI: 10.1517/14712598.2013.844227. 389 Steckbeck JD, Deslouches B, Montelaro RC. 2014. Antimicrobial peptides: new drugs for bad 390 bugs? Expert Opinion on Biological Therapy 14:11–14. DOI: 10.1517/14712598.2013.844227. 390 bugs? Expert Opinion on Biological Therapy 14:11–14. DOI: 10.1517/14712598.2013.844227. PeerJ reviewing PDF | (2020:09:52766:1:0:NEW 20 Oct 2020) Manuscript to be reviewed 418 Xhindoli D, Pacor S, Benincasa M, Scocchi M, Gennaro R, Tossi A. 2016. The human 419 cathelicidin LL-37 - A pore-forming antibacterial peptide and host-cell modulator. Biochimica et 420 Biophysica Acta - Biomembranes 1858:546–566. DOI: 10.1016/j.bbamem.2015.11.003. 421 Yang D, Chertov O, Bykovskaia SN, Chen Q, Buffo MJ, Shogan J, Anderson M, Schröder JM, 422 Wang JM, Howard OMZ, Oppenheim JJ. 1999. β-Defensins: Linking innate and adaptive 423 immunity through dendritic and T cell CCR6. Science 286:525–528. DOI: 424 10.1126/science.286.5439.525. 425 Zharkova MS, Orlov DS, Golubeva OY, Chakchir OB, Eliseev IE, Grinchuk TM, Shamova O v. 426 2019 Application of antimicrobial peptides of the innate immune system in combination with 425 Zharkova MS, Orlov DS, Golubeva OY, Chakchir OB, Eliseev IE, Grinchuk TM, Shamova O v. 425 Zharkova MS, Orlov DS, Golubeva OY, Chakchir OB, Eliseev IE, Grinchuk TM, Shamova O v. 426 2019. Application of antimicrobial peptides of the innate immune system in combination with 426 2019. Application of antimicrobial peptides of the innate immune system in combination with 426 2019. Application of antimicrobial peptides of the innate immune system in PeerJ reviewing PDF | (2020:09:52766:1:0:NEW 20 Oct 2020) 427 conventional antibiotics-a novel way to combat antibiotic resistance? Frontiers in Cellular and 428 Infection Microbiology 9. DOI: 10.3389/fcimb.2019.00128. 429 Zhu C, Bao NR, Chen S, Zhao JN. 2017. The mechanism of human β-defensin 3 in MRSA- 430 induced infection of implant drug-resistant bacteria biofilm in the mouse tibial bone marrow. 431 Experimental and Therapeutic Medicine 13. DOI: 10.3892/etm.2017.4112. 31 Experimental and Therapeutic Medicine 13. DOI: 10.3892/etm.2017.4112. Manuscript to be reviewed 427 conventional antibiotics-a novel way to combat antibiotic resistance? Frontiers in Cellular and 428 Infection Microbiology 9. DOI: 10.3389/fcimb.2019.00128. 427 conventional antibiotics-a novel way to combat antibiotic resistance? Frontiers in Cellular and 428 Infection Microbiology 9. DOI: 10.3389/fcimb.2019.00128. 427 conventional antibiotics-a novel way to combat antibiotic resistance? Frontiers in Cellular and 428 Infection Microbiology 9. DOI: 10.3389/fcimb.2019.00128. 427 conventional antibiotics-a novel way to combat antibiotic resistance? Frontiers in Cellular and 428 Infection Microbiology 9. DOI: 10.3389/fcimb.2019.00128. 429 Zhu C, Bao NR, Chen S, Zhao JN. 2017. The mechanism of human β-defensin 3 in MRSA- 430 induced infection of implant drug-resistant bacteria biofilm in the mouse tibial bone marrow. 431 Experimental and Therapeutic Medicine 13. DOI: 10.3892/etm.2017.4112. 429 Zhu C, Bao NR, Chen S, Zhao JN. 2017. The mechanism of human β-defensin 3 in MRSA- 430 induced infection of implant drug-resistant bacteria biofilm in the mouse tibial bone marrow. 431 Experimental and Therapeutic Medicine 13. DOI: 10.3892/etm.2017.4112. 431 Experimental and Therapeutic Medicine 13. DOI: 10.3892/etm.2017.4112. PeerJ reviewing PDF | (2020:09:52766:1:0:NEW 20 Oct 2020) Manuscript to be reviewed Manuscript to be reviewed Manuscript to be reviewed Table 1(on next page) Table 1(on next page) Table 1(on next page) Amino acid sequences and characteristics of defensins used PeerJ reviewing PDF | (2020:09:52766:1:0:NEW 20 Oct 2020) Manuscript to be reviewed Manuscript to be reviewed Table 2(on next page) Manuscript to be reviewed 1 2 Peptide Amino acid sequence Length (amino- acid residues) Molecular weight Charge Hydrophobic residues HNP-1 ACYCRIPACIAG ERRYGTCIYQGR LWAFCC 30 3.45 kDa +3 53% hBD-1 DHYNCVSSGGQ CLYSACPIFTKIQ GTCYRGKAKCC K 36 3.94 kDa +4 36% hBD-3 GIINTLQKYYCR VRGGRCAVLSC LPKEEQIGKCST RGRKCCRRKK 45 5.17 kDa +11 33% Manuscript to be re PeerJ reviewing PDF | (2020:09:52766:1:0:NEW 20 Oct 2020) Table 2(on next page) Table 2(on next page) Minimum inhibitory concentration (MIC) of AMPs and rifampicin (RIF) against S. aureus isolates FOX, cefoxitin; AMP, ampicillin; CIP, ciprofloxacin; LVX, levofloxacin; DOX, doxycycline; ERY, erythromycin; AZM, azithromycin; GEN, gentamicin; AMN, amikacin; RIF, rifampicin; * – MRSA. PeerJ reviewing PDF | (2020:09:52766:1:0:NEW 20 Oct 2020) Manuscript to be reviewed Manuscript to be reviewed Antimicrobial agent MIC (mg/L) S. aureus isolates HNP-1 hBD-1 hBD-3 RIF Resistance phenotype SA-1 8 4 4 0.004 AMP, CIP SA-2 4 8 0.5 0.004 CIP SA-3 8 16 8 0.008 CIP SA-4 4 2 0.5 0.004 AMP, CIP, ERY, AZM SA-5 4 4 1 0.008 CIP, DOX SA-6 0.5 1 1 0.004 CIP, DOX SA-7 2 4 0.5 0.004 AMP, ERY, AZM SA-8 4 8 1 0.008 AMP, AZM SA-9* 0.5 4 0.5 0.016 FOX, AMP, CIP, LVX, DOX, ERY, AZM, GEN, AMN SA-10* 0.5 8 1 0.016 FOX, GEN, AMN SA-11* 4 2 4 0.016 FOX, AMP, GEN, AMN SA-12* 2 16 8 0.016 FOX, AMP, CIP, LVX, DOX, ERY, AZM, GEN, AMN SA-13* 2 4 4 0.008 FOX, AMP, CIP, LVX, DOX, ERY, AZM, GEN, AMN SA-14* 8 4 1 0.008 FOX, AMP, CIP, LVX, DOX, ERY, AZM, GEN, AMN SA-15* 4 8 0.5 0.008 FOX, AMP, CIP, LVX, DOX, ERY, AZM, GEN, AMN SA-16* 4 16 0.5 0.004 FOX, AMP, CIP, LVX, DOX, ERY, AZM, GEN, AMN SA-17* 16 2 1 0.008 FOX, AMP, CIP, LVX, DOX, ERY, AZM, GEN, AMN SA-18* 4 2 0.5 0.004 FOX, AMP, CIP, LVX, DOX, ERY, AZM, GEN, AMN SA-19* 1 2 0.5 0.004 FOX, AMP, CIP, LVX, DOX, ERY, AZM, GEN, AMN SA-20* 4 16 0.5 0.032 FOX, AMP, CIP, LVX, DOX, ERY, AZM, GEN, AMN SA-21* 4 8 1 0.016 FOX, AMP, CIP, LVX, DOX, ERY, AZM, GEN, AMN SA-22* 16 4 4 0.016 FOX, AMP, CIP, LVX, DOX, ERY, AZM, GEN, AMN SA-23* 4 16 0.5 0.004 FOX, AMP, CIP, LVX, DOX, ERY, AZM, GEN, AMN SA-24* 16 8 0.5 0.032 FOX, AMP, CIP, LVX, DOX, ERY, AZM, GEN, AMN SA-25* 4 8 1 0.008 FOX, AMP, CIP, LVX, DOX, ERY, AZM, GEN, AMN PeerJ reviewing PDF | (2020:09:52766:1:0:NEW 20 Oct 2020) 1 SA-26* 16 8 4 0.016 FOX, AMP, CIP, LVX, DOX, ERY, AZM, GEN, AMN SA-27* 4 16 2 0.032 FOX, AMP, CIP, LVX, DOX, ERY, AZM, GEN, AMN Manuscript to be reviewed 1 SA-26* 16 8 4 0.016 FOX, AMP, CIP, LVX, DOX, ERY, AZM, GEN, AMN SA-27* 4 16 2 0.032 FOX, AMP, CIP, LVX, DOX, ERY, AZM, GEN, AMN Manuscript to be reviewed 1 PeerJ reviewing PDF | (2020:09:52766:1:0:NEW 20 Oct 2020) Manuscript to be reviewed Antimicrobial agent MIC (mg/L) E. coli isolates HNP-1 hBD-1 hBD-3 AMN Resistance phenotype EC-1 32 >64 8 4 AMP, AMC, CFX, IMP, CFS, GEN, LVX, CHL EC-2 16 >64 4 2 AMP, AMC, CFX EC-3 32 >64 4 4 AMP, AMC, CFX, IMP, LVX, CHL EC-4 16 >64 4 4 AMP, CFX, CHL EC-5 8 16 0.5 4 AMP, AMC, CFX, IMP, CHL EC-6 4 32 1 1 AMP, CHL EC-7 4 >64 4 4 AMP, CHL EC-8 16 32 8 4 AMP, AMC, CFX, GEN, CHL EC-9 8 32 16 4 AMP, CHL EC-10 32 8 8 4 AMP, AMC, CFX, CHL EC-11 32 16 4 2 AMP EC-12 32 >64 2 1 AMP, AMC, CFX EC-13 8 8 1 2 AMP, CHL EC-14 4 32 2 4 AMP, AMC, CFX, EC-15 2 >64 4 4 AMP, AMC, CFX, LVX, CHL EC-16 4 32 8 2 AMP, CHL EC-17 4 16 4 4 AMP, AMC, CFX, GEN, CHL EC-18 8 8 8 2 AMP, CHL EC-19 16 32 8 1 AMP, AMC, CFX, CHL EC-20 32 32 4 1 AMP, CHL EC-21 32 >64 8 2 AMP, AMC, CFX, IMP, LVX, CHL EC-22 16 32 8 4 AMP EC-23 8 >64 8 1 AMP, CFX, CHL EC-24 4 >64 8 2 AMP, AMC, CFX, CHL 1 Table 3(on next page) Table 3(on next page) Minimum inhibitory concentration (MIC) of AMPs and amikacin (AMN) against E. coli isolates AMP, ampicillin; AMC, amoxicillin-clavulanic acid; CFX, cefotaxime; IMP, imipenem; CFS, cefoperazone-sulbactam; LVX, levofloxacin; GEN, gentamicin; AMN, amikacin; CHL, chloramphenicol. PeerJ reviewing PDF | (2020:09:52766:1:0:NEW 20 Oct 2020) Manuscript to be reviewed Table 4(on next page) Table 4(on next page) PeerJ reviewing PDF | (2020:09:52766:1:0:NEW 20 Oct 2020) PeerJ reviewing PDF | (2020:09:52766:1:0:NEW 20 Oct 2020) PeerJ reviewing PDF | (2020:09:52766:1:0:NEW 20 Oct 2020) Table 4(on next page) Fractional inhibitory concentration indexes (FICI) of human defensins in combination with rifampicin (RIF) against S. aureus isolates * – MRSA; FICI ≤ 0,5 – synergistic effect; 0.5 < FICI < 4 – no interaction; FICI > 4 – antagonism. PeerJ reviewing PDF | (2020:09:52766:1:0:NEW 20 Oct 2020) Manuscript to be reviewed FICI S. aureus isolates HNP-1 + RIF hBD-1 + RIF hBD-3 + RIF SA-1 0.5 1.5 0.5 SA-2 0.5 1 0.5 SA-3 0.375 0.75 0.375 SA-4 0.75 0.75 0.875 SA-5 0.375 0.5 0.5 SA-6 0.625 1.5 0.5 SA-7 0.5 1.25 0.5 SA-8 0.5 0.75 0.375 SA-9* 0.375 0.75 0.625 SA-10* 0.5 0.625 0.5 SA-11* 0.375 1.25 0.3125 SA-12* 0.15625 0.75 0.375 SA-13* 0.5 0.5 0.5 SA-14* 0.5 0.5 0.375 SA-15* 0.3125 0.75 0.25 SA-16* 0.28125 0.625 0.5 SA-17* 0.375 0.75 0.375 SA-18* 0.5 1.25 0.5 SA-19* 0.625 1.0625 0.375 SA-20* 0.265625 1.125 0.375 SA-21* 0.375 1.5 0.75 SA-22* 0.25 1.25 0.5 SA-23* 0.5 1.25 0.5 SA-24* 0.5 0.625 0.375 SA-25* 0.5 1.125 0.375 SA-26* 0.3125 1.5 0.375 SA-27* 0.375 0.75 0.5 Manuscript to be reviewed Manuscript to be reviewed Table 5(on next page) PeerJ reviewing PDF | (2020:09:52766:1:0:NEW 20 Oct 2020) PeerJ reviewing PDF | (2020:09:52766:1:0:NEW 20 Oct 2020) Table 5(on next page) Table 5(on next page) Fractional inhibitory concentration indexes (FICI) of human defensins in combination with amikacin (AMN) against E. coli isolates FICI ≤ 0,5 – synergistic effect; 0.5 < FICI < 4 – no interaction; FICI > 4 – antagonism; in some cases of hBD-1 + AMN combination FICI has not been calculated – since MIC values of hBD-1 were > 64 mg/L. PeerJ reviewing PDF | (2020:09:52766:1:0:NEW 20 Oct 2020) Manuscript to be reviewed FICI E. coli isolates HNP-1 + AMN hBD-1 + AMN hBD-3 + AMN EC-1 0.5 - 0.5 EC-2 0.375 - 0.375 EC-3 0.25 - 0.5 EC-4 0.375 - 0.5 EC-5 0.375 1 0.75 EC-6 0.75 1 0.375 EC-7 0.375 - 0.5 EC-8 0.5 1.5 0.5 EC-9 0.375 0.75 0.375 EC-10 0.5 0.375 0.5 EC-11 0.75 0.75 0.375 EC-12 0.5 - 0.5 EC-13 0.625 1 0.75 EC-14 0.375 0.75 0.5 EC-15 0.5 - 0.5 EC-16 0.5 1 0.5 EC-17 0.25 1.5 0.5 EC-18 0.5 2 0.5 EC-19 0.375 1.5 0.375 EC-20 0.5 1.5 0.5 EC-21 0.375 - 0.5 EC-22 0.25 1.5 0.375 EC-23 0.375 - 0.5 EC-24 0.3125 - 0.375 PeerJ reviewing PDF | (2020:09:52766:1:0:NEW 20 Oct 2020) PeerJ reviewing PDF | (2020:09:52766:1:0:NEW 20 Oct 2020) PeerJ reviewing PDF | (2020:09:52766:1:0:NEW 20 Oct 2020)
https://openalex.org/W2162865238
https://cris.unibo.it/bitstream/11585/517623/2/12913_2015_Article_748.pdf
English
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Unfolding similarity in interphysician networks: the impact of institutional and professional homophily
BMC health services research
2,015
cc-by
7,333
Abstract Background: Modern healthcare is characterized by high complexity due to the proliferation of specialties, professional roles, and priorities within organizations. To perform clinical interventions, knowledge distributed across units, directorates and individuals needs to be integrated. Formal and/or informal mechanisms may be used to coordinate knowledge and tasks within organizations. Although the literature has recently considered the role of physicians’ professional networks in the diffusion of knowledge, several concerns remain about the mechanisms through which these networks emerge within healthcare organizations. The aim of the present paper is to explore the impact of institutional and professional homophilies on the formation of interphysician professional networks. Methods: We collected data on a community of around 300 physicians working at a local health authority within the Italian National Health Service. We employed multiple regression quadratic assignment procedures to explore the extent to which institutional and professional homophilies influence the formation of interphysician networks. Results: We found that both institutional and professional homophilies matter in explaining interphysician networks. Physicians who had similar fields of interest or belonged to the same organizational structure were more likely to establish professional relationships. In addition, professional homophily was more relevant than institutional affiliation in explaining collaborative ties. Methods: We collected data on a community of around 300 physicians working at a local health authority within the Italian National Health Service. We employed multiple regression quadratic assignment procedures to explore the extent to which institutional and professional homophilies influence the formation of interphysician networks. Results: We found that both institutional and professional homophilies matter in explaining interphysician networks. Physicians who had similar fields of interest or belonged to the same organizational structure were more likely to establish professional relationships. In addition, professional homophily was more relevant than institutional affiliation in explaining collaborative ties. Conclusions: Our findings have organizational implications and provide useful information for managers who are responsible for undertaking organizational restructuring. Healthcare executives and administrators may want to consider the structure of advice networks while adopting new organizational structures. Keywords: Homophily, Physicians’ networks, Social network analysis, Organizational theory social networks within communities of professionals [4-6]. The preponderance of prior research focuses on the structure and impact of social networks on individ- ual and organizational outcomes and benefits, such as quality of care, adoption of innovations and evidence- based medicine (EBM), patient satisfaction, and prescrib- ing behavior [7-12]. Mascia et al. BMC Health Services Research (2015) 15:92 DOI 10.1186/s12913-015-0748-9 Mascia et al. BMC Health Services Research (2015) 15:92 DOI 10.1186/s12913-015-0748-9 Open Access Abstract Social network analysis (SNA) has been used to explain information exchange patterns among professionals, such as the diffusion of medical in- novations [3,13,14], physicians’ decision making [15] as well as organizational culture and hierarchies [2,16]. Despite the wide application of SNA in healthcare, less attention has been paid to the determinants of social network formation among physicians [17,18]. Unfolding similarity in interphysician networks: the impact of institutional and professional homophily ele Mascia1*, Fausto Di Vincenzo2, Valentina Iacopino3, Maria Pia Fantini4 and Americo Cicchetti3 Daniele Mascia1*, Fausto Di Vincenzo2, Valentina Iacopino3, Maria Pia Fantini4 and Americo Cic * Correspondence: dmascia@rm.unicatt.it 1Department of Public Health and ALTEMS (Graduate School of Health Economics and Management), Catholic University of the Sacred Heart, Largo F. Vito 1, 00168 Rome, Italy Full list of author information is available at the end of the article © 2015 Mascia et al.; licensee BioMed Central. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. Background Coordination and work in healthcare increasingly occur through informal networks of relationships rather than through channels that are tightly prescribed by formal reporting structures or detailed work processes [1]. Phy- sicians often establish interpersonal collaborative ties with colleagues to access and exchange clinical know- ledge and to solve daily problems or decide on effective treatments for patients [2,3]. The healthcare manage- ment literature has widely investigated the relevance of * Correspondence: dmascia@rm.unicatt.it 1Department of Public Health and ALTEMS (Graduate School of Health Economics and Management), Catholic University of the Sacred Heart, Largo F. Vito 1, 00168 Rome, Italy Full list of author information is available at the end of the article Page 2 of 8 Mascia et al. BMC Health Services Research (2015) 15:92 Mascia et al. BMC Health Services Research (2015) 15:92 specific purpose of changing the routine behaviors of professionals within hospitals. For example, clinical di- rectorates were introduced into the Italian National Health System (I-NHS) as an institutional reference model, with the aim of reorienting activities towards healthcare processes carried out by divisional units [33] in charge of making strategic and organizational deci- sions [34,35]. These intermediate organizational models manage certain services of large hospitals and resemble the divisions that are typically adopted in large private multinational corporations [31,32]. The size of the dir- ectorate, its degree of autonomy, and the criteria used for integrating hospital clinical wards may vary consider- ably across health systems [32]. Hospital executives are often free to decide how to implement the new model in hospitals by selecting the specific clinical wards and medical specialties to be integrated into single depart- ments. The variety of merged clinical specialties heavily affects the ability of clinical directorates to influence the behaviors of physicians, including their propensity to build collaborative relationships. The propensity to create professional relationships is strongly driven by homophily that is, the preference of individuals to choose others who are similar to them- selves as partners [19]. Increasing interest in this topic is due to the growing relevance of interactions among indi- viduals in sociological and organizational issues [20]. Different attributes have been identified as determinants of homophily, including race and ethnicity, gender, age, religion, education, occupation and social class, network positions, behaviors, attitudes, abilities, beliefs, and aspi- rations [19]. Background For example, belonging to the same med- ical specialty largely explains the propensity of physicians to form professional networks in hospital organizations [29] and to ensure fruitful peer-to-peer communication [30]. On the other hand, physicians are often enrolled in separate clusters with highly similar members. Thus, pro- fessional boundaries may constitute a problem when they hinder the spread of innovations, guidelines, and clinical protocols [5]. The social environment—that is, the phys- ical and institutional spaces where individuals interact—is a relevant issue affecting homophilous ties, which can induce similarity in behaviors [8]. In the healthcare sec- tor, such an institutional space could refer to emerging organizational models characterizing hospital organizations. In the healthcare sector, professional categories delin- eate the boundaries of the social space in which collective norms, rules and behaviors are generated and adopted by individuals [5]. For example, belonging to the same med- ical specialty largely explains the propensity of physicians to form professional networks in hospital organizations [29] and to ensure fruitful peer-to-peer communication [30]. On the other hand, physicians are often enrolled in separate clusters with highly similar members. Thus, pro- fessional boundaries may constitute a problem when they hinder the spread of innovations, guidelines, and clinical protocols [5]. The social environment—that is, the phys- ical and institutional spaces where individuals interact—is a relevant issue affecting homophilous ties, which can induce similarity in behaviors [8]. In the healthcare sec- tor, such an institutional space could refer to emerging organizational models characterizing hospital organizations. Many Western healthcare systems (e.g., U.K., Italy, Australia, France) have implemented healthcare reforms aimed at the adoption of new organizational models that focus on fostering patient-centered care and a team- based approach in the development of clinical activities [31,32]. These newly adopted models, referred to as “clinical directorates” or “departments”, are defined by groups of clinical specialties that are integrated with the Many Western healthcare systems (e.g., U.K., Italy, Australia, France) have implemented healthcare reforms aimed at the adoption of new organizational models that focus on fostering patient-centered care and a team- based approach in the development of clinical activities [31,32]. These newly adopted models, referred to as “clinical directorates” or “departments”, are defined by groups of clinical specialties that are integrated with the Given this theoretical background, in this paper we as- sume that the social environment in which physicians interact is a relevant factor affecting homophilous ties. Background Moreover, homophily has been studied in several settings, such as voluntary organizations [21], post- graduate educational programs, universities and schools [22-25], hospitals [26], workplace organizations [27] and courthouses [28]. The principle that “similarity breeds connection” [19] simplifies the process of communication, by mitigating conflicts and relationship costs and by producing rele- vant effects in terms of trust and solidarity [20,24,25]. Homophily usually arises from an individual’s choice (“choice homophily”) or from the specific structure of the individual’s social world (“induced homophily”) [21]. In the first case, the selection occurs because of the pref- erence of similar attributes; in the second case, relational choices are guided by the social context. In other words, the creation of homophilous ties can be due to individ- ual preference as well as to social world proposals, even if the latter are the results of choices and opportunities along an individual’s life [24]. The understanding of homophilous relationships is particularly interesting in the healthcare setting, where the final aim is the integration and standardization of healthcare processes. Indeed, the organizational models created to achieve these goals are considered ineffective if they do not encourage interactions among professionals. It is crucial to investigate the determinants of these inter- actions and to provide the management with an inform- ative basis for evaluating the quality of organizational action. Organizational and social proximity, defined as the closeness among individuals within a certain context or network, make physicians more likely to link closely. Given this proximity, linked physicians become progres- sively similar because of the induced homophily guiding their choices [24]. For example, Keating et al. [30] showed that physicians are more likely to be influenced by other colleagues of the same organization than by clinicians of other hospitals, suggesting that spatial and geographical proximities do matter for the creation of ties. This influ- ence occurs because belonging to the same social context often means being involved in similar activities or achiev- ing common goals. This trend has also been observed for homophilous ties based on gender. Moreover, prior litera- ture has recorded professional homophilous behaviors between physicians and other categories of healthcare professionals [26], as well as among clinicians of different specialties [5]. In the healthcare sector, professional categories delin- eate the boundaries of the social space in which collective norms, rules and behaviors are generated and adopted by individuals [5]. Background More formally, the aim of the present paper is to explore the impact of institutional and professional homophilies on the formation of interphysician professional networks. Page 3 of 8 Mascia et al. BMC Health Services Research (2015) 15:92 Mascia et al. BMC Health Services Research (2015) 15:92 using a questionnaire survey including 17 questions or- ganized into three main sectionsa. The main purpose of the first section was to collect attributional data on clini- cians, including their age, gender, hospital tenure, prior experience in the I-NHS, specialization, and managerial role. The second section was designed to collect data on the information exchange network relationships between clinicians. Consistent with Burt [41], we used an egocen- tric social network survey instrument to derive a single list of people with whom the respondent had ties. Specif- ically, each physician was asked to name colleagues both within and outside his/her hospital organization with whom he/she interacts through a) relationships based on exchanging consulting and advice, and b) relationships that are functional for patient assistance. We combined responses into a summary network, including both types of ties. In accordance with a previous study [42], in order to measure the strength of a tie between the re- spondent and each identified colleague, we asked each respondent “How strong is the connection you have with X?” with possible responses ranging on a 5-point scale from “not at all” (1) to “very much” (5). The purpose of the third section was to determine each clinician’s pro- pensity for adopting EBM. This part of the questionnaire included some questions examining the respondents’ perception of the availability of information and of the possibility of accessing scientific evidence through cor- porate information technology support. According to previous literature, people who share similar interests are more likely to form relationships [36-38]. Moreover, sharing a similar context or institutional en- vironment increases mutual trust and the perception of belonging, aspects that influence the formation of intercon- nections among actors [38,39]. According to this latter definition, the role of the formal organizational structure seems to emerge as a relevant predictor in the creation of interconnections: actors who belong to the same organization are more likely to interact reciprocally, be- cause they have similar problems they need to share and solve. Variables To achieve the aim of the present study, we used a dyadic approach and assumed the dyad (rather than the individ- ual) as unit of analysis. We used one-mode squared matri- ces to appraise the relationships among actors in the networks, as well as the differences and similarities among each pair (dyad) of actors [29]. Our dependent variable was relational in nature because it captured interpersonal collaborative relationships be- tween the sampled physicians. Unfortunately, ordinary regression techniques are not suitable to regress the formation of social networks on several independent vari- ables (i.e., interphysician collaborative links). We trans- formed all covariates representing individual attributes Background Thus, we define “institutional homophily” the likeli- hood that individuals will create ties with others who have similar interests and are affiliated with similar institutions. On the other side, an individual’s professional back- ground could influence interconnections among individ- uals. In particular, similar perspective and social capital could act as predictors of networks. In this study, we de- fine “professional homophily” as the likelihood that indi- viduals will establish relationships with others who are similar in terms of their field of specialization. We as- sume that people who generally share a similar back- ground are more likely to create ties. Research setting A cross-sectional SNA study was conducted on a commu- nity of physicians affiliated with six hospital sites in Bolo- gna’s local health authority (LHA), one of the largest healthcare organizations in the I-NHS. In Italy, LHAs aim to promote and protect the health of all resident citizens in a specific jurisdiction. Currently, there are 145 LHAs representing the basic elements of the I-NHS. Based on the criteria of efficiency and cost-effectiveness, LHAs pro- vide care directly through their own facilities or indirectly by purchasing services from accredited providers, such as independent public and private structures. Questionnaires were submitted online from February to November 2007 to all 329 physicians affiliated with the six hospitals of the LHA. Physicians completed questionnaires during breaks at work or while at home. Participation was voluntary, and respondents were assured that their re- sponses would be confidential and used for research pur- poses only. According to Italian law, ethics approval was not necessary because no information concerning patients was collected and no experimental research was per- formed. However, all physicians provided written in- formed consent for their participation in the study. The LHA of Bologna serves approximately 800,000 in- dividuals residing in 50 municipalities in the province of Bologna, with more than 80,000 hospitalizations per year. In Bologna’s LHA, hospital activities are carried out according to a matrix organizational model. Six hospital facilities perform hospital activities, which are provided by three clinical directorates. In this LHA, moderately heterogeneous clinical wards and medical specialties are merged into clinical directorates. More- over, the time elapsed since the new model was formally adopted is satisfactory to ascertain whether behavioral changes, such as new patterns of collaboration between clinicians, are at play. Data collection d Data used in this paper refer to a previously published observational study [11,29,40], which was conducted by Page 4 of 8 Mascia et al. BMC Health Services Research (2015) 15:92 into dyadic explanatory variables. This transformation allowed us to translate attributional data into “relational” data. Specifically, continuous covariates (age, tenure, etc.) were entered into the statistical model as absolute differ- ences between “sender” and “receiver” physician values. Smaller differences indicated greater similarity between physicians, and values of “0” indicated that the physicians were identical with respect to a given attribute. In other words, we assumed that differences in continuous attri- butes measured the degree of homophily among dyad members, and that positive (negative) signs for continuous variables indicated larger (smaller) differences. Thus, the heterophily (homophily) of physicians positively (nega- tively) predicted the propensity of physicians to establish collaborative ties with colleagues. In contrast, individual attributes represented by categorical covariates (affiliation with directorates, type of specialization, etc.) or binary co- variates (gender, managerial role, etc.) were transformed and entered into the model as binary variables, which took the value “1” if both members of the dyad belonged to the same category, and “0” otherwise. that each professional belonged to, measuring the abso- lute difference (in years) for the dyad. Fourth, we consid- ered whether each professional covered a managerial position (director) or not in his/her organization. Be- cause this attribute was categorical, we assumed the value of “1” when there was similarity in the managerial role in the dyad, and the value of “0” otherwise. Professional homophily “Professional homophily” refers to the likelihood that a professional will establish relation- ships with others who are similar in terms of professional interest or who belong to the same field of specialization. Because this attribute was categorical, we reported a value of “1” when similarity in the field of specialization occurred in the dyad, and a value of “0” otherwise. Institutional homophily “Institutional homophily” re- fers to the likelihood that a professional will establish rela- tionships with others in the same clinical directorate. This attribute was reported with a value of “1” when both phy- sicians in the dyad were affiliated with the same clinical directorate, and a value of “0” otherwise. Dependent variable Th i l Geographical proximity Physical distance can impact the creation of professional networks and can explain network characteristics [29]. We considered a control variable to explain the physical distance of actors. Data of the respondents’ addresses were obtained, and the ab- solute value of distances in each dyad were calculated with the Google Maps utility. The interpersonal collaborative network was included in our model by considering a measure of relational “strength” describing the frequency of collaboration among physicians. This dependent variable, named “Professional Network”, was obtained and used to build an adjacency matrix de- scribing the strength of the interconnections among profes- sionals within each dyad with the UCINET 6 software package [43]. Results h Table 2 reports the MR-QAP results obtained by regres- sing all explanatory variables on the professional network. We found that “Professional Homophily (same category)” and “Institutional Homophily (same category)”, represent- ing professional and institutional homophily, respectively, were positively and significantly associated with the dependent variable. The standardized coefficients reported in Table 2 allowed us to compare the diverse impact of the two kinds of homophily. In the model, the coefficient of “Professional Homophily (same category)” (β = 0.1988; p < 0.01) was greater than the coefficient of “Institutional Homophily (same category)” (β = 0.0459; p < 0.01). These results document that professional homophily loomed larger than institutional homophily in predicting the for- mation of interphysician collaborative network ties in healthcare organizations. The sample consisted of 297 physicians (response rate was 90%). All data needed for the analyses were available for the entire sample. Given the relational analytical framework adopted in this paper, the analysis was con- ducted on 87,912 dyads.b Table 1 shows the correlation coefficients for all variables included in the analyses. Pearson coefficients were computed through quadratic assignment procedures [43]. The network variable was slightly correlated with “Gen- der (same category)” (r = 0.0207, p < 0.05), whereas it was positively correlated with “Professional Homophily (same category)” (r = 0.3414, p < 0.05) and “Institutional Homo- phily (same category)” (r = 0.2195, p < 0.05). Thus, having the same specialization or belonging to the same clinical directorate increased the likelihood that a link would be observed between two physicians. The network variable was negatively and significantly associated with “Manager- ial Role (same category)” (r = −0.0395, p < 0.05) and “Geo- graphical Distance” (r = −0.0663, p < 0.05). Thus, physicians who were located further from each other or who had similar roles in their respective organizations were less likely to create collaborative links. A strong posi- tive correlation was found between the variables “Age (difference in)”, “Years since Graduation (difference in),” “Tenure I-NHS (difference in)”, and “Tenure LHA (differ- ence in)”. Therefore, the difference in age between physicians reflected differences in terms of seniority academically, within the I-NHS, and within the currently affiliated organization. “Years since Graduation (difference in)” and “Manager- ial Role (same category)” were significantly associated with the dependent variable of the network. The variable “Years since Graduation (difference in)” was negatively associated with the professional network (β = −0.0318, p < 0.01). Explanatory variables SNA was performed to analyze the collected relational data. SNA is a method of collecting and analyzing data from multiple actors (or nodes) interacting through ties (or edges) with one another [45]. In our case, each phys- ician represented a node, and each edge represented the professional collaboration in service provision. Age Similarity in age occurred when the difference in age between associates was within a range of ±4 years, in accordance with Feld [44]. Age, as a continuous attri- bute, was measured as the absolute difference in age for each dyad of respondents. We performed a multiple regression-quadratic assign- ment procedure (MR-QAP) to identify predictors of interphysician collaborative ties. MR-QAP is a combina- torial data-analysis procedure adopted routinely in social- network research [9,29,46]. The purpose of MR-QAP is to regress a dependent relational matrix on one or more in- dependent matrices, and to determine whether independ- ent variables are significant predictors of the dependent variables. This procedure is used to model a social rela- tionship matrix by using the values of other relational matrices and control variables, such as attributes of social actors. The MR-QAP procedure was used to ensure that the reported nonparametric estimates would be as robust as possible with respect to our methodological choices. In estimating our models through MR-QAP, we adopted the semi-partially method as reported in Dekker et al. [47], Gender Similarity in gender, as a categorical attribute, was reported as a value of “1” when a pair of actors had the same gender, and a value of “0” otherwise. Seniority To ascertain whether similarity in seniority was a predictor of professional interconnections, we considered different variables in the model. First, we measured the number of years since graduation, calcu- lating the absolute difference (in years) for each dyad. Second, we measured the tenure within the I-NHS, expressed by the length of service of respondents. Tem- poral measures were continuous attributes; therefore, we evaluated the absolute difference (in years) for each dyad. Third, we considered the tenure within the LHA Page 5 of 8 Mascia et al. BMC Health Services Research (2015) 15:92 (same category)” and “Institutional Homophily (same category)” (r = 0.2315; p < 0.05). Although the level of cor- relation was moderate, this finding suggest that a certain degree of homogeneity encompassed the criteria for mer- ging clinical wards and hospital specialties into clinical directorates [32]. Explanatory variables which appears to be reasonably robust against the possible multicollinearity problem that our data may generate. We performed MR-QAP analyses using the UCINET 6 soft- ware package [43]. Results h Thus, collaborative ties were less likely to be observed be- tween physicians that exhibited larger differences in the time elapsed since graduation. This finding may indicate that attending university during the same time-span can influence the similarity of physicians’ mental models, blue- prints, and schemata, which can later affect partner se- lection within hospital organizations. We believe that this is an important finding deserving further analysis. The negative parameter for “Managerial Role” (β = −0.0307, p < 0.01) indicated that collaborative ties were less likely to be observed between physicians who had the same role in Interestingly, we observed a positive and significant correlation between the two variables capturing the differ- ent types of homophily, namely “Professional Homophily Table 1 Pearson correlation coefficients* Variable 1 2 3 4 5 6 7 8 9 1 Professional Network - 2 Age (difference in) 0.004 - 3 Gender (same category) 0.021 −0.030 - 4 Years since Graduation (difference in) −0.008 0.852 −0.031 - 5 Professional Homophily (same category) 0.341 −0.001 0.035 0.004 - 6 Tenure I-NHS (difference in) 0.003 0.748 −0.024 0.738 −0.004 - 7 Tenure LHA (difference in) −0.001 0.427 −0.001 0.449 0.006 0.532 - 8 Managerial Role (same category) −0.039 −0.171 0.024 −0.162 −0.013 −0.205 −0.116 - 9 Institutional Homophily (same affiliation) 0.219 0.052 0.004 −0.014 0.231 −0.012 −0.036 0.007 - 10 Geographical Proximity −0.066 −0.010 −0.001 −0.016 −0.056 −0.008 −0.008 0.012 −0.186 *QAP correlation coefficients (observations = 87,912 - number of permutations = 1,000). Significant coefficients are reported in bold (p < 0.05). Table 1 Pearson correlation coefficients* Mascia et al. BMC Health Services Research (2015) 15:92 Page 6 of 8 Table 2 MR-QAP estimating factors associated with the propensity of physicians to collaborate Estimate† Significance Intercept 0.0000 Age (difference in) 0.0096 0.242 Gender (same category) 0.0075 0.081 Years since Graduation (difference in) −0.0318* 0.003 Professional Homophily (same category) 0.1988* 0.000 Tenure I-NHS (difference in) 0.0152 0.126 Tenure LHA (difference in) 0.0030 0.377 Managerial Role (same category) −0.0307* 0.000 Institutional Homophily (same category) 0.0459* 0.000 Geographical Proximity −0.0177 0.056 Observations (No. of dyads) 87,912 Multiple R2 (Adj.) 0.314 (0.311) p-value 0.000 Number of permutations: 5,000; †Standardized coefficients; *p < 0.01. Results h Table 2 MR-QAP estimating factors associated with the propensity of physicians to collaborate We tested how institutional homophily (belonging to the same clinical directorate) and professional homo- phily (belonging to the same medical specialty) affect the propensity of physicians to establish a connection. As documented, homophily can arise from the social context (“induced homophily”) or from individual preference (“choice homophily”) [21]. In our perspective, institutional homophily clearly correlates with the reference social con- text, which the management contributed to (re)shape by introducing a new organizational model. Conversely, pro- fessional homophily represents a mixed composition of the two perspectives, as the choice of the medical field is originally due to an individual choice. Our first result is that homophily matters in the forma- tion of connections within healthcare organizations. This finding is consistent with numerous studies in other set- tings, which have found that homophily strongly affects connections. People expect, a priori, that self-similar col- leagues are more likely to accept them, be trustworthy, and hold similar beliefs, thereby mitigating the potential conflicts, misunderstandings, and monitoring costs that come with making connections [19,36]. an organization. Clinicians may be requested to integrate and combine different types of knowledge, competences, and responsibilities when establishing collaborative link- ages with colleagues. Collaborations between individuals holding different managerial roles may enhance the achievement of a satisfactory level of complementarity in daily hospital activities. g Our second result is that the homophily effect related to specialty (professional homophily) is stronger than the effect related to organizational structure (institutional homophily). This finding is new and may be explained by the theoretical arguments of professionalism in healthcare. The culture, beliefs, wisdom, and cognitive mental models of physicians are formed well before they enter healthcare organizations [48]. As documented by Ferlie et al. [5], complex organizations contain many different professional groups, each of which may operate in a distinct commu- nity of practice. Categories of professionals are typically separated from each other by social and cognitive bound- aries, which may be an impediment to the creation of trustworthy relationships. Medical specialties represent the first example of professional categories which physi- cians may belong to. These specialties largely contribute to explain physicians’ propensity to establish advice networks and peer-to-peer communication in hospital organizations [30]. Results h In this setting, boundaries delineate differences be- tween categories in terms of professional norms, which can delay or prevent knowledge sharing and diffusion among professionals belonging to different knowledge do- mains [5]. Finally, the coefficient of determination in the model was moderate in degree. This finding clearly indicated that other factors not included in the present study can also explain interphysician collaborative network ties. Prior relationships, friendship ties, and the joint involve- ment of clinicians in ad hoc organizational task forces or teams are relevant examples of other predictors that fu- ture studies should explore. Discussion h fl The flow of clinical knowledge and integration across professional and organizational boundaries is a major challenge for healthcare administrators in many countries. Throughout the world, numerous organizational and technological innovations have progressively dictated hos- pital restructuring, with the aim of guaranteeing multidis- ciplinary service provision. New models and practices have been implemented to boost coordination and inte- gration. Notwithstanding their adoption, these interven- tions risk remaining largely ineffective if they do not impact on how physicians communicate and interact [1]. This study aimed to disentangle the formation process of interactions by examining the professional network in a community of physicians working in an Italian LHA. Homophily theory and SNA provided the theoretical and instrumental techniques for identifying theory, measures, and empirical models. The current study has some limitations. First, network data were collected and analyzed at one point in time. As observed, network configurations may be influenced by previous patterns of relationships. Thus, future longi- tudinal studies are needed to extend the validity of our results. Second, we demonstrated that people are more likely to create social ties with self-similar others; how- ever, no research has investigated whether, over time, people are more likely to maintain homophilous or Page 7 of 8 Mascia et al. BMC Health Services Research (2015) 15:92 but also should focus on the creation of a need to access others’ resources [9] (clinical guidelines, clinical audits, etc.). Second, managers are encouraged to foster collabor- ation across heterogeneous groups of physicians character- ized by different specializations: for example, by targeting and defining group objectives, adopting new organizational arrangements, or restructuring processes [40]. Another ex- ample in this direction is the adoption of specific types of clinical directorates or interdisciplinary and interprofes- sional groups [35]. Clinical directorates could organize training programs that encourage multidisciplinarity, as well as informal occasions of socialization addressed to fos- ter collaborative relationships among physicians. heterophilous relationships. Third, random sampling was not used. However, because of the large organizational context of the study, the characteristics of the investigated organization, and the quality of the collected data in terms of compliance, we believe that our results might be ex- tended to analogous organizations within the I-NHS. Yet, the generalizability of this piece of evidence to other healthcare contexts remains limited. Fourth, institutional homophily is likely influenced by the timing of adoption of new arrangements and models. Authors’ contributions DM and AC contributed to the conception of this paper; DM, MPF and AC designed the study. FDV and VI selected articles that met the inclusion criteria. DM, FDV and VI extracted data and conducted the statistical analysis. All authors made substantial contributions to the interpretation of results and have seen and approved the final version. All authors read and approved the final manuscript. Discussion h fl Professionals are uncertain about the costs and benefits of a new model at the time of its adoption. As time elapses, clinicians will be more likely to acknowledge and under- stand organizational innovations. Moreover, the process of identifying physicians as relevant partners may change over time. Homophily is highly dynamic, subject to change, and influenced by exogenous forces that affect the processes of individuals’ social identification [49]. The adoption of new clinical directorates delineates new organizational boundaries, which will likely affect physi- cians’ perceptions about who are heterophilous colleagues and their mental predisposition towards homophilous col- leagues. The impact of such internal redesign on physi- cians’ identification and perception of homophily may eventually overshadow their traditional perception about homophilous colleagues (i.e., individuals holding the same clinical specialty). Future studies are encouraged to ex- plore whether professional and institutional homophilies have different impacts on partner selection by physicians, by comparing two or more organizations in which clinical directorates are adopted at different times. Finally, to test professional homophily, we only included actors within the organization under study, and excluded potential links to physicians outside our setting. Further research should include actors outside the organization, to see whether the results are similar to our own. Endnotes a The questionnaire is available from the authors upon request. b b Relational data are generically represented by squared “n × n” sociomatrices, where “n” is the number of actors. Our 297 sampled clinicians eventually gener- ated a sample of 87,912 dyads, which equals “297 × 297” (excluding the main diagonal of the matrix). Abbreviations d b EBM: Evidence-based medicine; I-NHS: Italian National Health Service; LHA: Local health authority; MR-QAP: Multiple regression quadratic assignment procedure; SNA: Social network analysis. 1. Shortell SM, Rundall TG. Physician-organization relationships: social networks and strategic intent. In: Mick SS, Wyttenbach ME, editors. Advance in health care organizational theory. San Francisco: Jossey-Bass; 2003. p. 143–97. 2. West E, Barron DN, Dowsett J, Newton JN. Hierarchies and cliques in the social networks of health care professionals: implications for the design of dissemination strategies. Soc Sci Med. 1999;48:633–46. 3. Wensing A, van Lieshout J, Koetsenruiter J, Reeves D. Informal exchange networks for chronic illness care in primary care practices: an observational study. Implement Sci. 2010;5:1–10. Conclusions 1Department of Public Health and ALTEMS (Graduate School of Health Economics and Management), Catholic University of the Sacred Heart, Largo F. Vito 1, 00168 Rome, Italy. 2Department of Economic Studies, G. d’Annunzio University, Viale Pindaro 42, 65127 Pescara, Italy. 3Department of Economics and Management and ALTEMS (Graduate School of Health Economics and Management), Catholic University of the Sacred Heart, Largo F. Vito 1, 00168 Rome, Italy. 4Department of Public Health, University of Bologna, Via San Giacomo 12, 40126 Bologna, Italy. This study proposes and applies homophily theory as a way to capture the formation of professional and institu- tional networks among physicians. SNA revealed the interpersonal communication structure, which could not be visualized by conventional surveys. Our findings have several implications for hospital exec- utives. Managing intraorganizational networks involves two opposite management tasks. Managerial interventions are required because organizations primarily use these networks to integrate dispersed knowledge. On the other hand, the networks are strongly self-organizing and emer- gent in nature, independent from (or even negatively in- fluenced by) interventions by management [50]. To be effective, management strategies aimed at increasing net- working among employees should not focus solely on the creation of organizational models, as has often been done, Received: 18 September 2014 Accepted: 17 February 2015 Received: 18 September 2014 Accepted: 17 February 2015 References Clinical directorates: stakeholders 8. Fattore G, Frosini F, Salvatore D, Tozzi V. Social network analysis in primary care: the impact of interactions on prescriving behavior. Health Policy. 2009;92:141–8. expectations. Br J Health Care Manag. 2004;10:10–7 35. Braithwaite J, Westbrook MT, Hindle D, Iedema RA, Black DA. Does restructuring hospitals result in greater efficiency? – An empirical test u diachronic data. Health Serv Manage Res. 2006;19:1–12. 9. Fattore G, Salvatore D. Network organizations of general practitioners: antecedents of formation and consequences of participation. BMC Health Serv Res. 2010;10:118–30. 36. Ibarra H. Paving an alternative route: gender differences in managerial networks. Soc Psychol Q. 1997;60:91–102. networks. Soc Psychol Q. 1997;60:91–102. 10. Dunn AG, Westbrook JI. Interpreting social network metrics in healthcare organizations: a review and guide to validating small networks. Soc Sci Med. 2011;72:1064–8. y 37. Burt RS. The network structure of social capital. New York: Jai Press Ltd; 2000. 38. Mergel I, Heurta T, van Stelle J. How do networkers network? PNG working paper. 11. Mascia D, Cicchetti A. Physician social capital and the reported adoption of evidence-based medicine: exploring the role of structural holes. Soc Sci Med. 2011;72:798–805. 39. Merton RK. Contributions to the theory of reference group behavior. Social Theory and Social Structure: New York, Free Press; 1968. Theory and Social Structure: New York, Free Press; 1968. 40. Mascia D, Cicchetti A, Damiani G. “Us and them”: a social network analysis of physicians’ professional networks and their attitudes towards EBM. BMC Health Serv Res. 2013;13:429–37. 12. Cunningham FC, Ranmuthugala G, Plumb J, Georgiou A, Westbrook JI, Braithwaite J. Health professional networks as a vector for improving healthcare quality and safety: a systematic review. BMJ Qual Saf. 2012;21:239–49. 41. Burt RS. Social contagion and innovation: cohesion versus struc 41. Burt RS. Social contagion and innovation: cohesion versus structural equivalence. Am J Sociol. 1987;92:1287–335. 41. Burt RS. Social contagion and innovation: cohesion versus structural equivalence. Am J Sociol. 1987;92:1287–335. equivalence. Am J Sociol. 1987;92:1287–335. 13. Coleman JS, Katz E, Menzel H. Medical innovation: a diffusion study. The Bobbs-Merrill Company: Indianapolis; 1966. 42. Granovetter MS. The strength of weak ties. Ame J Sociol. 1973;78:1360–80. 42. Granovetter MS. The strength of weak ties. Am 43. Borgatti SP, Everett MG, Freeman LG. UCINET 6 for windows: software for social network analysis. Harvard: Analytic Technologies; 2002. 14. Creswick N, Westbrook JI. Social network analysis of medication advice- seeking interactions among staff in an Australian hospital. Mascia et al. BMC Health Services Research (2015) 15:92 References Int J Med Inform. 2010;79:116–25. social network analysis. Harvard: Analytic Technologies; 2002. 44. Feld S. Structural determinants of similarity among associates. Am Sociol Rev. 1982;47:797–801. 15. Scott J, Tallia A, Crosson JC, Orzano AJ, Stroebel C, DiCicco-Bloom B, et al. Social network analysis as an analitic tool for interaction patterns in primary care practices. Ann Fam Med. 2005;3:1–35. 45. Wasserman S, Faust K. Social network analysis: methods and applications. New York: Cambridge University Press; 1994. g y 46. Krackhardt D. Predicting with networks: a multiple regression approach to analyzing dyadic data. Soc Networks. 1988;10:359–81. 16. Lurie SJ, Fogg TT, Dozier AM. Social network analysis as a method of assessing institutional culture: three case studies. Acad Med. 2009;84:8–23. analyzing dyadic data. Soc Networks. 1988;10:359–81 47. Dekker D, Krackhardt D, Snijders TAB. Sensitivity of MRQAP tests to collinearity and autocorrelation conditions. Psikometrica. 2007;72:563–81 17. Chambers D, Wilson P, Thompson C, Harden M. Social network analysis in healthcare settings: a systematic scoping review. PLoS One. 2012;7:41–9. 48. Abott A. The system of professions. Chicago: University of Chica 18. Christakis N, Fowler JH. Contagion in prescribing behavior among networks of doctors. Mark Sci. 2011;30:213–6. 49. Moody J. Race, school integration, and friendship segregation in America. Am J Sociol. 2001;107:679–716. 19. McPherson M, Smith-Lovin L, Cook JM. Birds of feather: homophily in social networks. Annu Rev Soci. 2001;27:415–44. 50. Thompson M. Structural and epistemic parameters in communities of practice. Organization Science. 2005;16:151–64. 20. Rivera MT, Soderstrom SB, Uzzi B. Dynamics of dyads in social networks: assortative, relational, and proximity mechanism. Annu Rev Sociol. 2010;36:91–115. 21. McPherson M, Smith-Lovin L. Homophily in voluntary organizations: status distance and the composition of Face-to-Face groups. Am Sociol Rev. 1987;52:370–9. 22. Mehra A, Kilduff M, Brass DJ. At the margins: a distinctiveness approach to the social identity and social networks of underrepresented groups. Acad Manage J. 1998;41:441–52. 23. Wimmer A, Lewis K. Beyond and below racial homophily: ERG models of a friendship network documented on facebook. Am J Sociol. 2010;116:583–642. 24. Kossinets G, Watts DJ. Origins of Homophily in an evolving social network. Am J Sociol. 2009;115:405–50. 25. Goodreau SM, Kitts JA, Morris M. Birds of a feather, or friend of a friend? Using Exponential Random Graph Models to investigate adolescent social networks. Demography. 2009;46:103–25. References Submit your next manuscript to BioMed Central and take full advantage of: • Convenient online submission • Thorough peer review • No space constraints or color figure charges • Immediate publication on acceptance • Inclusion in PubMed, CAS, Scopus and Google Scholar • Research which is freely available for redistribution Submit your manuscript at www.biomedcentral.com/submit Submit your next manuscript to BioMed Central and take full advantage of: • Convenient online submission • Thorough peer review • No space constraints or color figure charges • Immediate publication on acceptance • Inclusion in PubMed, CAS, Scopus and Google Scholar • Research which is freely available for redistribution Submit your manuscript at www.biomedcentral.com/submit Submit your next manuscript to BioMed Central and take full advantage of: • Convenient online submission • Thorough peer review • No space constraints or color figure charges • Immediate publication on acceptance • Inclusion in PubMed, CAS, Scopus and Google Scholar • Research which is freely available for redistribution Submit your manuscript at www.biomedcentral.com/submit Submit your next manuscript to BioMed Central and take full advantage of: References 1. Shortell SM, Rundall TG. Physician-organization relationships: social networks and strategic intent. In: Mick SS, Wyttenbach ME, editors. Advance in health care organizational theory. San Francisco: Jossey-Bass; 2003. p. 143–97. g y y p 2. West E, Barron DN, Dowsett J, Newton JN. Hierarchies and cliques in the social networks of health care professionals: implications for the design of dissemination strategies. Soc Sci Med. 1999;48:633–46. 3. Wensing A, van Lieshout J, Koetsenruiter J, Reeves D. Informal exchange networks for chronic illness care in primary care practices: an observational study. Implement Sci. 2010;5:1–10. Page 8 of 8 Page 8 of 8 Mascia et al. BMC Health Services Research (2015) 15:92 4. Winkelman WJ, Choo CW. Provider-sponsored virtual communities for chronic patients: improving health outcomes through organizational patient-centred knowledge management. Health Expect. 2003;6:352–8. 4. Winkelman WJ, Choo CW. Provider-sponsored virtual communities for chronic patients: improving health outcomes through organizational patient-centred knowledge management. Health Expect. 2003;6:352–8. 4. Winkelman WJ, Choo CW. Provider-sponsored virtual communities for chronic patients: improving health outcomes through organizational patient-centred knowledge management. Health Expect. 2003;6:352–8. 30. Keating NL, Ayanian JZ, Cleary PD, Marsden PV. Factors affecting influential discussions among physicians: a Social Network Analysis of a Primary Care Practice. Soc Gen Intern Med. 2007;22:794–8. 5. Ferlie E, Fitzgerald L, Wood M, Hawkins C. The nonspread of innovations: the mediating role of professionals. Acad Manage J. 2005;48:117–34. 5. Ferlie E, Fitzgerald L, Wood M, Hawkins C. The nonspread of innovations: the mediating role of professionals. Acad Manage J. 2005;48:117–34. 31. Lega F. The rise and fall(acy) of clinical directorates in Italy. Health Policy. 2008;85:252–62. 32. Mascia D, Morandi F, Cicchetti A. Looking good or doing better? Patterns of decoupling in the implementation of clinical directorates. Health Care Manage Rev. 2014;39:111–23. 6. Li CL, Grimshaw JM, Nielsen C, Judd M, Coyet PC, Graham ID. Evolution of Wenger’s concept of community of practice. Implement Sci. 2009;4:11–22. 6. Li CL, Grimshaw JM, Nielsen C, Judd M, Coyet PC, Graham ID. Evolution of Wenger’s concept of community of practice. Implement Sci. 2009;4:11–22. 7. Boyer L, Belzeaux R, Maurel O, Baumstrarck-Barrau K, Samuelian JC. A social network analysis of healthcare professional relationships in a French hospital. Int J Health Care Qual Assur. 2010;23:460–9. 33. Mintzberg H. The structuring of organizations. Englewood Cliffs: Prentice-Hall; 1970. 34. Dunnion M, Dunne E. Clinical directorates: stakeholder expectations. Br J Health Care Manag. 2004;10:10–7. 34. Dunnion M, Dunne E. Submit your next manuscript to BioMed Central and take full advantage of: 26. West E, Barron DN. Social and geographical buondaries around senior nurse and physicians leaders: an application of social network analysis. Can J Nurs. 2005;37:132–48. • Convenient online submission 27. Bacharach SB, Bamberger PA, Vashdi D. Diversity and homophily at work: supportive relations among white and African-American peers. Acad Manage J. 2005;48:619–44. • Thorough peer review 28. Lazega E, Mounier L, Snijders T, Tubaro P. Norms, status and the dynamics of advice networks: a case study. Soc Networks. 2009;32:18–29. 29. Mascia D, Cicchetti A, Fantini MP, Damiani G, Ricciardi W. Physicians’ propensity to collaborate and their attitude towards EBM: a cross-sectional study. BMC Health Serv Res. 2011;11:172–83. Submit your manuscript at www.biomedcentral.com/submit
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Novalis et le Symbolisme Fran�ais
Neophilologus
1,922
public-domain
8,504
Braak. 243 Novalis et le Symbolisme ranc,ais. NOVALIS ET LE SYMBOLISME FRAN~AIS. ,,On dissimule, ou on ignore que souvent, ~, bien scruter, les originalit~s d~coneertantes dnune nouvelle ,,mani~re" ne constituent que des retours inconscients, des reveils de ~ensibilit~, des r~miniscences, qui ont la fra~cheur d'une aube". (M. Wilmoffe, ~tade$ critiqua~ sur la Tradigion ~tt6ralre en France. Ch. X: L.'E'$th~tique des Symbolistes, p. 308j. I. C'est un fait g~n~ralement reconnu que les grandes r~formes litt~raires ne s'improvisent pas du jour au iendemain. L'initiative des plus hardis novateurs resterait sans effet, si eile ne trouvait un terrain pr~par~ de longue main. Dans le domaine de l'esprit les grandes r~novations ne s'imposent que par une sorte de collaboration inconsciente de toute une g~n~ration. Car les influences n'agissent que par ressemblances: les hommes n'acceptent que les idles et ]es doctrines qui existent d~j/t vaguement, d'une far latente, en eux-m~mes. C'est ce qui s'est vu darts l'histoire du symbolisme. Certes, w~es h plus de quarante ans de distance, les querelles entre d~cadents et symbolistes, se combattant h coups de manifestes et de programmes, nous semblent bien vaines aujourd'bui. Nous savons trop qu'au plus fort de ia m~l~e symboliste on n'a pas toujours distingu~ nettement toute la port(}e de la r~forme litt~raire qui s'accomplissait. Ce qu'on ne voyait pas, et ce que probablement on ne pouvait pas voir, c'est que le symbolisme ~tait autre chose et mieux qu'une doctrine esth~tique nouvelle. Or, il y a un point qui demeure acquis et que personne ne s'avisera plus de r~voquer en doute; c'est que, grace aux efforts des pontes symbolistes l'apport litt~raire de 1880 ~ '00 a grossi d~finitivement le g~nie franr de telle sorte que ni la formule parnassienne, n i l e programme romantique, ni la doctrine naturaliste ne sauraient plus lui convenir. S'il e n e s t ainsi, il faut eroire que ie symbolisme a fait passer dans le domaine public l'aspiration h une forme de Beaut~ plus vraie, plus pleine et plus complete. Et d~s lors la n~cessit~ s'impose d'admettre que pour la g~n~ration de 1880 il ne s'agissait pas de savoir si ,,ie vers libre ~tait l'apport le plus clair du symbolisme" 0, mais bel et bien d'une mani~re nouvelle d'envisager les questions contemporaines, d'un mode de pens~e ~ part et pourtant g~n~ral, d'une vision toute nouvelle de la r#alit~. Le jour of~ Maeterlinck, au cours d'une ~tude sur Novalis, trouva sous sa plume ces paroles remarquables: . . . . ,,car c'est /~ l'endroit of~ l'homme semble sur le point de finir que probablement il commence", on pouvait constater qu'il y avait quelque chose de chang6 dans la temperature morale de son ~poque. Affirmer qu'au-dei/~ des bornes du connaissable il y a des r~giong inexplor~es de l'inconscient, c'~tait reconnaltre que jusqu'ici l'art n'avait jamais embrass~ tout le r~el, c'~tait entrevoir du m~me coup une po~sie capable ~) ,,Ce qui se d~tache nettement comme r~sultat tangible de t'ann~e ~886, ce fur l'instauration du vers libre". (Oustave Kahn, Le$ Origines da Symbolisrae, Revue Blanche, ler nov. 4_904, p. 340). Braak. 244 Novalis et le Symbolisme franqais. de sugg~rer tout l'homme, c'~tait en somme r~int~grer darts la po6sie le sens du myst~re avec le frisson des inqui~tudes sup~rieures. Cette po~sie intime, route baign~e de nostalgie, et travers~e d'~lans vers i'inlini, ,,diese erweiterte Poesie", comme Novalis la caract~rise, n'est pas seulement un acheminement vers .l'interiorit~, elle est aussi un effort pour rapprocher l'individu de l'Absolu: elle est l'expression d'une Synth~se. Ce qui relie entre eux les symbolistes, malgr6 les divergences d'opinion sur la technique de leur art. c'est un immense besoin de r~g6n~ration par la vie intense de l'~me. Le positivisme, en brisant le ressort de l'~me, avait exait~ l'intelligence au d~triment de la sensibilitY; /t cette doctrine correspondait n~cessairement une po~sie plastique et picturale, image fiddle du monde objectif. Au rebours de la doctrine parnassienne les Symbolistes reconnaissent que le monde de la Vie et de l'Ame ne relive pas, en ce qu'il a d'essentiel et de profond, de la connaissance scientifique, mais d'une connaissance sp~ciale que le philosophe Bergson nomme l'intuition. Dans son Essai sur les donn~es imm~diates de la conscience (1889) Bergson affirme ia priorit~ sur l'action r~fl~chie d'une activit~ obscure et plus fiche qui consiste en la facult6 de saisir imm~diatement la Vie, de sympathiser avec elle. II serait peut-~tre excessif de pr~tendre que route la doctrine esth~tique du Symbolisme d~rive de la doctrine bergsonienne; ce qu'on peut avancer sans risquer de se tromper, c'est que la substance du Symbolisme est renferm~e dans les donn~es imm~diates de la conscience. C'est ce r~veil de l'intuitionnisme qui apparente le Symbolisme au subjectivisme de Fichte et de Novalis et d'oh d~coule la po~sie romantique allemande. Car, rechercher derriere le mirage trompeur des apparettces ia v~rit~ immuable et id~ale, est-ce autre chose enfin que de reconnaitre que ia r~alit~ est une illusion que nous nous donnons ~ nous-memes, le plus souvent inconsciemment; accorder A l'intuition la priorit~ sur la pens~e r~fl~chie pour saisir la Vie en route sa plenitude, est-ce autre chose que d'admettre que I'intelligence est purement n~gative et aboutit ~ une continuelle suppression de la r~alit~ par la r~flexion? Ainsi, il y a sur deux plans parall~les, entre l'intuitionnisme de Bergson et le subjectivisme de FichteoNovalis une conformit~ telle que nous nous sommes demand~ si le Symbolisme, quant /~ son essence m~taphysique, ne rel~ve pas du romantisme allemand. La question de savoir s'il existe entre le Symbolisme et le romantisme allemand non seulement une certaine analogie de forme et de fond, mais aussi des relations vivantes 1), se rattache ~troitement /~ celle, non moins importante, de savoir si les romantiques fran~ais, en d~daignant de des1) Apropos de ces relations vraiment ,,vitales" ou ,,causales" dont l'~tude de litt~rature eompar~e doit tenir le plus grand compte, nous tenons ~ signaler ici une analogie frappante entre certains vers des Vies encloses de Oeorges Rodenbaeh, dans lesquels le pbete, choisissant comme ~pigraphe d'une de ses pi~ces une pens~e ~minemment novalisienne: ,,Lesmaladiesdes pierres sont des v~g(~tations", etc. semble s'inspirer directement du naturisme panth~istique de Novalis, C'est ~t l'obligeance de M. le Dr. Frank Baur, Professeur ~. l'Atbdn~e Royal de Oand, que nous devons cette observation suggestive Braak. 245 Novalis et le Symbolisme franqais. cendre jusqu'au dynamisme de la Vie, en faisant une part d~mesur~e /l I'Imagination et en exaitant une fausse sensibilit~ au ddtriment de l'intelligence, sont les v~ritables continuateurs, les h~ritiers Idgitimes du romantisme allemand. Et si nous nous croyons fond~ de contester au romantisme francais des droits ~ l'hdritage du romantisme allemand - - /! moins d'en excepter quelques d i i m i n o r e s - - la question se pose tout naturellement de savoir s'il y a entre la podsie symboliste et le romantisme allemand solution de continuit~ ou bien filiation, interrelation v~ritable. A notre avis on ne sal~rait comprendre route la port~e philosophique de la r~forme symboliste qu'/l moins de remonter au Moi fichtden, de m~me que la rdnovation esthdtique poursuivie par ies Symbolistes n'acquiert toute sa valeur que si on la rattache au v~ritable lyrisme romantique, consid~rd comme une puissance cr~atrice et divine, seule rdv~latrice des myst~res qui enveloppent I'existence de I'homme. Est-ce, pour me servir d'une expression de M. Baldensperger ~) ,,d(~passer une zone Idgitime d'observation", est-ce ,,introduire une nouvelle finalitd dans l'dtude du passe" que de ddmontrer qu'apr~s le positivisme parnassien devait dclore une podsie synthdtique et universeile, proche parente de ceile qu'apr~s la sdcheresse ddsolante de l',,Aufkl~irung" la gdn~ration de la Sturm und Drangperiode t~cha de rdaliser, et dont Novalis eut I'intuition g~niale? Nous ne le croyons pas. De m~me qu'au sortir du rationalisme de l',,Aufkl~irung" les pontes reprirent conscience de la mission v~ritable de la podsie: d'etre ,,ein Sttick des Weltgeistes", les Symbolistes, apr~s l'intenectualismearide de l'(~coleparnassienne, restitu~rent /~ la po6sie son sens universel et cosmique et sa valeur d'art particuli~re, inddpendante de route autre forme d'expression. Ainsi, /l quatre-vingts ann~es d'intervalle, nous assistons /l une v([ritable r~surrection du romantisme allemand, ce qui prouverait une lois de plus que le romantisme r~pond /i un besoin de la nature humaine et qu'/l des (~poques diff~rentes - - certaines conjonctures ~tant ~gales ou analogues - les m~mes tendances se manifestent, les m~mes aspirations t~chent de se r~aliser 3). II. A ne considdrer rart symboliste qu'au point de vue de l'affranchissement, on ne saurait nier qu'il n'existe une certaine analogie entre le romantisme fran(;ais et le Symbolisme. Seulement cette analogie tout ext(~rieure n'atteint pas le fondement m~taphysique et esthdtique du symbolisme. II serait m~me plus exact de dire que le Romantisme, tout en s'opposant au classicisme par l'abolition des codes et des r~gles, et en renouvelant la langue et la m~trique, a ngglig~ de renouveler le fond m~me de la po(~sie: l'inspiration po~tique. Car, cette iibert~ que Victor Hugo ne se lasse pas de revendiquer 1~ F. Baldensperger, Le Mot et et la Chose, Revue de littdratare compar6e, janvier-mars, t921, p. 25. 2) .,Was einmal tief mit der menschlichen Natur zusammenh~.ngt, wird in irgend einer Form die Menschheit immer wieder besch~.ftigen. Ja, es wird in endlicher Zeit sogar wieder in n/imlicher Form erscheinen". Dr. Fritz Ernst, die Romantische Ironie, p. 125 Zfirich, Verlag Schulthess ~ Co., 1915. Braak. 246 Novalis et le SymlSolismefran~ais. pour le Romantisme, d'abord dans sa Pr~]ace des Orientale~: ,,L'art n'a que faire des lisi0res, des menottes, des batllons", puis dans la Prdtace de Cromwell: ,,La muse moderne se demandera si la raison ~troite et relative de l'artiste dolt avoir gain de cause sur la raison infinie, absolue du Cr~ateur", et enfin dans la Preface d'Hernani: ,,Le romantisme, c'est la libert~ dans l'art" cette libert~ revient en derni~re analyse ~ ce que l'artiste revendique le droit irr/prescriptible d'affirmer l'individualit~ de son talent darts son o~uvre, sans se soucier de n'importe quel art po~tique, de n'importe quelle rh~torique. Ainsi la libert~ de l'art - - on ne saurait trop insister sur ce point - - n'est au fond qu'un appel ~loquent ~ un individualisme effr~n~. Aussi nous croyons que Louis Bertrand, dans sa th~se sur La fin du classicisme et le retour d l'ant(aue a touch~ fort juste en r~duisant le Romantisme, celui d'Hugo du moins, ~ une renaissance de la Renaissance, c.-~t-d, au classicisme sous sa premiere forme. On salt que Hugo, dans ses Odes et Ballades s'inspire volontiers des pontes de la Pl~iade, qu'il met ~ contribution les vocabulaires des m~tiers, proc~d~ d'enrichissement d~j~ pratiqu~ par Ronsard, que son gofit pour les ajustements fastueux, les chatoiements et les rutilances de style accuse des affinit~s profondes entre son art exuberant et les grands peintres de la Renaissance, les Rubens, les Titien, les V~ron0se. Pour ce qui est de la r~novation du drame par l'aUiance du grotesque et du sublime, il suffit d'examiner de pros terrains jugements contemporains pour savoir ~ quoi s'en tenir sur la truculente fac~tie qu'on nomme la bataille d'Hernani et le succ0s de cette pi0ce, appel~e ~ inaugurer une Ore nouvelle clans l'~volution du theatre. Ainsi, darts la Revue de Paris, fond~e en 1829, Charles Nodier, que la gloire bruyante de son a m i n e laisse pas d'offusquer un peu, ~crit ~ propos du Marino Faliero de Casimir Delavigne: ,le vrai m~rite du style dramatique, c'est le style naturel, et il n'y a rien de moins naturel que ces phrases ~ pr~tention qui commandent le brouhaha, quand l'action ne demande que le d~veloppement nail d'un sentiment." Et, est-il encore permis de douter que ce soit bien r~ellement le drame de son ami que Nodier vise dans les lignes suivantes?. ,,La trag~die et le drame de la nouvelle ~cole ne sont gu0re autre chose que des m61odrames, relev~s de la pompe artificielle du lyrisme." D'ailleurs une lecture m~me superficielle de la correspondance d'Hugo ~ cette ~poque, suffirait ~ nous convaincre de l'avortement du drame romantique. Le po0te ne se voit-il pas oblig6 de constater que m~me apr0s I0 ~ 12 representations le public demeure hostile h sa piece et que le matin, entrant dans son cabinet de travail, il ne peut jeter un coup d'oeil dans ses journaux sans qu'il y lise des am~nit~s teUes que: ,absurde comme Hernani, niais, faux, ampoul~, pr~tentieux, extravagant et amphigourique comme Hernani." Quant au lyrisme d'Hugo, on ne saurait pr~tendre que le po0te pulse son inspiration aux sources m~mes de la vie. Non que le po0te n'excelle pas h en faire sentir le mouvement, le grouillement multiforme, l'~panouissement, l'~clat et les contrastes heurt~s et violents. En revanche, la v~ritable po~sie intime, baign~e d'ombre et de cr~puscule, modulation d'~tats d'~me et musique int~rieure, il faut convenir qu'elle tient bien peu de place dans son~uvre. C'est que, ~ mesure que le porte prend conscience de sa vocation, son talent Brask. 247 Novalis et le Symbolisrae frant;ais. s'oriente de plus en plus vers la po6sie 6pique et oratoire. Si en un certain sens routes les po6sies de Goethe sont des po6sies de circ0nstance, cela ne saurait s'appliquer rigoureusement ~ aucune de ses po6sies. On sait combien d'ing6niosit6 il a fallu aux commentateurs du grand porte allemand pour d~m~ler la part du contingent, du fortuit clans des po6sies comme Harzreise im Winter, An den Mond, etc. C'est que Goethe, grace au prestige de son g~nie, d6gage du fait isoi6 tout ce qu'il contient d'universel et d'humain, de telle sorte que pour le lecteur chaque piece devient un microcosme complet. ,,Das lebhafte poetische Anschauen eines beschr~lnkten Zustandes erhebt ein einzelnes zum zwar begrenzten, doch unumschr~inkten All, so dasz wir im kleinen Raume die ganze Welt zu sehen glauben". Comme Bruneti~re fair observer si ~ propos, Hugo ne projette pas sa personnalit6 sur les choses; mais au contraire ce sont les choses qui modifient, qui fa~onnent, qui ach~vent de d6terminer sa personnalit6 1). Nous touchons ici /~ une difference fondamentale entre la conception de la po~sie de Victor Hugo et l'esth6tique romantique, blalgr6 ses pr6tentions philosophiques le romantisme fran~ais n'a rien innov6 que dans l'ordre de i'imagination. Aussi l'individualisme, tel que l'entend Hugo tend ~ rien de moins qu'/~ rompre l'6quilibre entre I'imagination et le sentiment d'un c6t6 et ia raison de l'autre. C'est encore son imagination qui lui fair prendre au s6rieux son r61e de porte-flambeau, de proph~te et de pasteur, de ,,vates" inspir6: Son ~me aux mille voix que le Dieu qu'il adore blit au centre de tout comme un ~cho sonore . . . . Son imagination enfin, esp~ce de lentille grossissante et d6formante, lui donne sur les objets du monde ext6rieur une vision fantastique, tourment6e et hallucin6e. Au lieu d'6clore spontan6ment dans l'~me du porte, les m6taphores eties symboles jaillissent de sa fantaisie en 6builition comme des eataractes de lave de la bouche d'un crat~re et d6bordent de toutes parts le cadre sentimental du po~me. C'est ainsi qu'~ partir des Contemplation~ la plastique si nette des premiers po~mes s'amollit, se dissout dans la boursouflure du style, et l'on se sent emport6 darts le tourbillon d'une rh6torique quasi apocalyptique. Dans l'esth6tique romantique ia po6sie prend un caract~re d'universalit6 qui fait compl~tement d6faut dans I'ceuvre d'Hugo. L'id6al romantique ailemand tend /i fai~'e de la po6sie ia representation de l'~me en sa totalit6, ,,Darstellung des Gemiiths, der inneren Welt in ihrer Gesammtheit", selon l'expression de Novalis. Les esth6ticiens romantiques, tels que Schlegel et $olger consid~rent la po6sie comme une ,,Alipoesie" qui englobe routes les activit6s humaines: ,,Sie will und soil auch Poesie und Prosa, Genialit~it und Kritik, Kunstpoesie" und Naturpoesie bald mischen, bald verschmelzen, die Poesie lebendig und gesellig und das Leben und die Gesellschaft poetisch machen, den Witz poetisieren und die Formen der Kunst mit gediegenem Bildungsstoff jeder Art ausfiillen und s~ittigen und durch die Schwingungen des Humors beseelen" (Schlegel). 1) F. Bruneti~re, L'Evolution de la Po~sie lyrique en France aa X I X e si~cle, I, p. t95. Braak. 248 Novalis et le Symbolisme fran~ais. L'id6e d'un m61ange ou d'une fusion des arts et de !'~change de leurs moyens entre eux, est une id6e essentiellement romantique. Cette id6e, les symbolistes l'ont reprise, parce que, eux aussi, consid6raient la po6sie comme un art synth6tique 1). La hantise de fusion des parfums, des sons et des couleurs que Baudelaire devait traduire dans son fameux sonnet des Correspondances constitue un lien commun entre ies pontes symbolistes et les peintres impressionnistes. Personne mieux que Baudelaire n'6tait pr6par6 ~ comprendre route la port6e de la r~novation dans la technique impressionniste de Claude Monet, de Pissarro, de Sisley, de Gauguin et de Renoir, lui qui, onze ans avant la publication des Fleurs du real exposa dans son Salon de 1840 les prineipes de cet art nouveau, en d6finissant l'orchestration de ra couleur, l'action de l'atmosph~re sur les sutures des plans color6s, les relations de l'harmonie chromatique /i l'harmonie musicale, la coloration des ombres et la r6action chromatique des mol6cules. Et c'est aussi pour avoir compris l'unit6 profonde dont les diff~rents arts ne sont que des manifestations diff6rentes dans un ordre particulier de signes ou de repr6sentation que Baudelaire devait se passionner pour la dramaturgic de Wagner consid6r~e comme coincidence de plusieurs arts. s) Tous ces d6tails nous am~nent/l consid6rer que, bien loin d'etre un ph6nom~ne isol6, le Symbolisme correspond bien r6ellement ~ une vision route nouvelle de la r6alit6, puisque non seulement la po~sie, mats aussi la peinture s'en trouvent profond6ment renouvel6es dans leur conception d'art et leur technique. Le Romantisme au contraire, en lib6rant la langue po6tique, s'est trouv6 impuissant ~ renouveler l'inspiration po6tique, parce qu'il manquait d'un fondement m6taphysique. Aussi il n'y a rien d'~tonnant ~ ce que BanviIle dans son Petit Traitd de po~sie ]ranfaise se vote oblig~ de constater que la r6volution d'Hugo est rest~e incomplete. En posant le principe de la Rime puissance absolue, ,,le seul mot qu'on entende dans l e v e r s " , BanviUe fraye le chemin /l l'~cole Parnassienne, derni~re floraison du Romantisme. Ainsi le Romantisme franqais s'est fourvoy~ d~s le moment of1 Hugo s'en est fait le l~gislateur, et force nous sera de remonter aux dii minores pour renouer la chaine interrompue qui relic les symbolistes au romantisme allemand. III. Dans l'avant-propos de sa th~se sur Novalis M. Spenl~, voulant indiquer dans quel sens s'orientent ses recherches sur le romantisme allemand, nomme Novalis ,,la clef du romantisme", reprenant pour son compte une assertion du critique Arnold Ruge: ,,Son time rec~lait en une formule essentietle et concentr6e, sous forme d'intuition artistique et d'~motion lyrique, toutes 1) ,,Ils ont assimil6 l'art tout entier, sans distinguer entre la couleur, la plastique ou la sonorit6, ~. un vaste syst~me de similitudes, d'analogies, de correspondanees s'exprimant par des m~taphores et des allusions aux aspects directs et imm~diats de la vie". Camille Mauclair, L'Art ind~pendant fran~ais sol~s la 3i~rne R~pttblique, p. 101, 102. ~) L'O~uvre d'art de l'Avenir dans la Revue l~agndrienne de 1885: ,,I1 n'existe en somme qu'un art; les manifestations en sont diff~rentes, mats une seule peut ~tre e o m p l b t e . . . Le r~sultat le plus parfait sera done atteint par Faction commune de tousles arts s'efforqant vers le m~me but". Braak. 249 Novalis et le Symbolisme frant;ais. les aspirations qui, de son temps et longtemps apr~s lui, ont agitd la conscience ailemande dans ses profondeurs, et partout il a touchd droit au cceur de notre g~n~ration". Parti de la conception anthropocentrique du monde, Novalis ne tarda pas ~ reconnaRre que le caract~re strictement rationnel de ia ,,Wissenschaftslehre" de Fichte ne pouvait satisfaire pleinement ses disciples, prOoccupds avant tout de tirer du moi fichtden une esthdtique nouvelle. Ce qui fait la profonde originalitE de Novalis, c'est d'avoir ~largi en ,,Gemfith" le Moi fichtden, fair de raison pure et de vouloir intelligible; d'avoir substitu~ ~ l'iddalisme moral du maitre l'iddalisme magique, source de po~sie et d'dmotion artistique. D'apr~s Novalis nous ne ponvons comprendre le monde que par rintuition de notre Etre intime; et si nous pdndtrons au profond de nous- mEmes, c'est une ~me obscure, inddfinissable, mystdrieuse que nous trouvons. Novalis sentait obscur~ment la profondeur du gdnie podtique; au-del& de la distinction que crde I'analyse, il voulait chercher i'Unit~; plus loin que les phdnom~nes de surface, la couche profonde de la vie intdrieure. Ainsi l'~l~ment rdgOnErateur et vivifiant de la philosophie de Novalis rOside en la conclusion /l laquelle aboutit sa spOculation: Le monde est un mirage perpOtuel: des essences 6ternelles s'y rOflOchissent sans doute, mais leurs images mobiles se confondent, se brouillent et disparaissent. Il ne reste /l l'homme que le choix entre deux espOces d'illusions. Ou bien il affirme en prenant pour seuls informateurs ses sens corporels, la rOalit6 absolue de ce monde changeant, inconsistant, illusoire. Ou bien il affirme par la Foi la rOalit6 d'un monde invisible et idOal: mais c'est un idOal en lui m~me irrepr~sentable, une V~rit6 informulable, une Essence /~ qni manque la manifestation directe et adOquate de sa perfection. La pensOe planerait ainsi, ~ternellement suspendue entre les deux grandes Illusions, le monde visible et l'univers invisible, si l'homme ne d~couvrait en lui-mOme une imagination crOatrice qui l'61~ve au rang de dOmiurge. Cette illusion 6minemment positive et productrice, c'est l'art. L'art se proclame, en vertu de ia toute-puissance du dOmiurge humain, la r6alit6 absolue et la moralit6 parfaite. Or, si i'homme a ie pouvoir de crOer un univers par la seule force de son imagination, si d'un autre cOt6 rien n'existe qui ne soit un produit de son imagination, r a r t devient en somme un beau mensonge transcendental, de m~me que ia Vie - - selon l'expression de Novalis --- se rOduit /~ n'~tre plus qu'une ,,sch6ne genialische T~iuschung". Puisque l'univers n'est qu'une vaine apparence, puisqu'il n ' y a de rOalit6 que le Moi de l'artiste, il peut son gr6 ~tablir et annuler runivers. Se tenant, avec une gOnialit6 divine, au-dessus de ses crOations qu'il ne prend pas au sOrieux, il peut, d'apr~s l'expression de Schlegel, se permettre le luxe de la ,,selbstbewuszte Vereitelung des Objektiven, die g0ttliche Frechheit des Urteilens und Absprechens, ohne sich mit der Sache einzulassen". Cette ,,(3eistesfreiheit", qu'on nomme ironie romantique 1), qui lone un rOle important darts les M~rchendicl~tungen x) Benedetto Croce, Esthdtique comme science de dexpression et linguistique gdn6rate, II, p. 288, 289. Braak. 250 Novalis et le Symbolismefran~ais. de Tieck, de Brentano et d'Hoffmann, forme avec l'imagination cr6atrice la clef de vofite du romantisme allemand. Que certains pontes romantiques, /l d6faut d'imagination plastique et de pond6ration artistique, aient durement expi6 leur g6n6reuse folie de vouloir embrasser tout l'univers, voilA ce qu'on ne saurait contester. Ainsi Novali~, voulant d6passer Goethe dans son roman inachev6 d'Henri d'Ofterdingen, qui devait ~tre une apoth6ose de la po6sie, 6prouva /l ses d6pens qu'il y a des bornes que l'esprit de la po6sie ne saurait franchir impun6ment, et qu'il n'est pas d'ambition plus vaine ,,alle Zeitalter, Stlinde, (3ewerbe, Wissenschaften und Verh~Utnisse durchschreitend, die Welt zu erobern". Toujours les Icares payeront ~ la terre la ran~;on de leurs utopies et de leurs r~ves. Seulement, ce sur qnoi nous voudrions particuli6rement insister, c'est que l'~me de Novalis, si f6conde en 6motion lyrique, grace ~ son penchant /t l'occulte, grace surtout /t je ne sais quelle aptitude /l p6n6trer dans la nuit mystique (,,die Geisterwelt") et /l entrer en communion avec l'~me de monde, 6tait bien faite pour traduire les aspirations de son 6poque. Son ~me 6fair un foyer ardent off t o u s l e s rayons, toutes les iueurs qui 6clairent pas moments l'obscure conscience du monde viennent converger comme en un centre unique. Apr6s le rationalisme aride de l',,Aufkl~irung" Novalis est bien le premier d6couvrir le sens de la v6ritable Po6sie que, dans ses fragments philosophiques ii devait caract6riser en ces termes: ,,Der Sinn fiir Poesie hat viel mit crem Sinn fiir Mysticismus gemein; er ist der Sinn fiir das Eigentiimliche, l~ersonelle, Unbekannte, Geheimniszvolle, zu offenbarende, alas Nothwendigzuf~tllige. Er steilt das Undarstellbare dar; er sieht das Unsichtbare, fiihit das Unfiihlbare." C'est encore cet individuaUsme cosmique qui sera une source de r6novation pour la po6sie symboliste et qui fair de Novalis un v6ritable pr6curseur, un anc~tre du Symbolisme. Cette force cr6atrice et d6miurgique qui r6side au fond de la conscience humaine, Novalis en fait jaillir ies eaux vives gr~tce /l ia baguette magique de son id6alisme. Nous sommes port6s /l croire que si le jeune Hardenberg efit v6cu, il se serait tout entier donn6/t la po6sie. Sa carri6re trop courte ne lui a pas permis de r6aliser cette po6sie de l'Infini qu'il r6vait et dont nous trouv~ns l'intuition g6niale dans les Hymnes ~i la Nuit et les Hymnes spiritueUes. Ces m6ditations, off un ardent d6sir de vivre s'alUe /t un mystique app6tit de la mort, oh la nostalgie de la Vie 6ternelle s'exprime par des accents si path6tiques, resteront toujours comme le commentaire vivant de ces vers de Goethe: W~ir nicht das Auge sonnenhaft, Die Sonne wfird es nicht erblicken. Writ nicht in uns des Gottes eigne Kraft, Wie k6nnt uns GOttliches entzficken. A regarder d'un peu plus pr6s ce que Novalis entend par ,,tier Sinn ftir Poesie" on ne peut s'emp6cher de trouver qu'il place l'objet de la po6sie bien haut. En effet, n'est-ce pas une sorte de gageure que de vouloir rendre visible l'invisible, repr6senter l'irrepr6sentable, exprimer l'inexprimable? La r6ponse /~ cette question, nous la trouverons dans les Disciples d Sa'ls; Braak. 251 Novalis et le Symbolisme franqais. c'est / l c e s fragments philosophiques que nous empruntons le concept de ,,l'Einffihlung", principe esth~tique f~cond entre tous, puisqu'il forme la base meme du Symbolisme. Toute la doctrine esthetique du romantisme allemand repose sur un emploi /i rebours de nos sens, sur ce que Maine de Biran 1) nomme l',,ordre inverse". Grace /t l'impulsion spontan~e de son imagination rartiste ne coordonne pas a posteriori les impressions directes des sens exterieurs en un tableau representatif: poesie, peinture, sculpture; au contraire ce tableau imaginaire est donn~ a priori, est anterieur aux objets qui doivent s'y adapter. Ainsi rartiste produit des idles ou des images sans soilicitation exterieure: il ,,efflue" en dehors de lui-meme. Par l'intuition il s'identifie /~ la chose qu'ii veut rendre, ii la vit, il ne fair q u ' u n avec eile, i,l la possede du dedans. Porte, il ne decrira pas la foret en analysant, en decomposant ses aspects 9et ses formes multiples;,peintre~ il ne prend pas ses tableaux dans le monde exterieur. Dans l'un et l'autre cas, qu'il se serve du langage des sons ou de celui des couleurs, l'artiste s'efforce de prendre une vision centrale des choses, ~ en avoir rintuition plut6t que d'en faire l'analyse. Dans l'un et l'autre cas, porte symboliste ou peintre impressionniste, il evoqqera l'idee de la foret par un reve int~rieur qu'il fera passer en nous, grace/l une serie de suggestions successives et approximatives, s) Voii/t ce que Novalis veut dire quand il affirme ,,Die Poesie l~st fremdes Dasein im eignen auf". Ce mim6tisme spirituel est le secret du veritable artiste, car ,,der Kfinstler macht sich zu allem was er sieht und sein will." E t / l propos de ce panth~isme immanent qui permet au poete de s'identifier /i la foret, de ia vivre en quelque sorte, de la sentir, de se meier/l son souffle, n ' y aurait-il pas tout d'abord un rapprochement curieux /i faire entre tel passage des Disciples d Sals, of1 Novalis dit que nul .he comprendra la nature qui, par le moyen de la sensation ne s e m e l e /l t o u s l e s etres de la nature et ne s'~prouve en eux (,,sich gleichsam aller in sie hineinffihlt") - et relic lettre de Maurice de Guerin qui nous livre le secret du pantheisme qui court /l travers ie Centaure comme la s~ve se repand darts les moindres fibres de l'arbre: ,,Si l'on pouvait s'identifier au printemps, forcer cette pens~e au point de croire aspirer en soi route la vie, tout l'amour qui fermentent dans la nature, se sentir /l la fois fieur, verdure, oiseau, chant, fraicheur, elasticitY, volupt~, serenitY. Que serait-ce de moi? II y a des moments oh, /l force de se concentrer dans cette idee et de regarder fixement ia nature, on croit ~prouver quelque chose comme cela". (Journal: Lettre du 25 avril 1833). Et ie peintre impressionniste, pour qui, selon i'expression rant de lois circe d'Amiel s), un paysage est un etat d'~me, se doute-t-ii que cette idle x) Maine de Biran. La d6composition de la pens6e, ~Eavre$ philosophiques, tome II, p. 275 - 276. sj ,,Ainsi l'arl vise /~ imprimer en nous des sentiments plut6t qu'/L les exprlmer; il nous les sugg~re, et s~ passe volontiers de l'imitation de la nature quand il trouve ties moyens plus efficaees". Bergson, Donn~es imm6diates de la Conscience, p. t2. 2) :,Un paysage quelconque est un ~tat de l'ame, et qui lit darts t o u s l e s deux est~merveill(~ de retrouver la similitude dans chaque d~tail". Amiel, Fragments d'un Journal intime, 3t oct. 1852, tome I, p. 61. Braak. 252 Novalis et le Symbolismefran~ais. se trouve d~j/t chez Novalis? ,,Le paysage somptueux, dit Henri d'Ofterdin. gen, est pour moi comme une r~verie int~rieure (,,wie eine innere Fantasie"). IV. Si le courant de cette podsie pure, exposition de la vie intdrieure - - ,,darstellung des Gemflths" - - qui prend sa source dans le romantisme allemand, s'est brusquement tari dans les sables arides de l'art parnassien, la question se pose, de plus en plus pressante, si l'on pourrait en retrouver ies traces dans l'oeuvre des poetae m i n o r e s du Romantisme fran~ais. A p r o p o s du panth~isme de Maurice de Gudrin nous avons d~jA pu constater une parent6 spirituelle entre lui et Novalis. On sait d'ailleurs combien l'~ime du porte du Centaure ~tait, scion l'expression de son ami Barbey d'Aurevilly, tourment~e du ,,real de l'infini". Que, pendant son s~jour/t La Ch~naie Maurice de Gudrin se livr~t volontiers /t l'~tude des pontes allemands, notamment de Goethe et de Herder, cela ne fait pas de doute. S~y est-il occup~ de Novalis; a-t-il lu ses po~mes? M. Abel Lefranc, d a m sa biographic de Maurice, ne l'affirme pas et se borne /t constarer que le jeune porte consacrait ses loisirs studieux A s'assimiler la culture allemande. Mais, en mati~re litt~raire il y a des hypotheses, ou pour me servir d'une expression chore /~ Novalis, des ,,Ueberzeugungen" qui valent des certitudes. Aussi nous croyons refinement qu'une comparaison un peu fouillde entre le J o u r n a l de Maurice et celui de Novalis ferait d~couvrir que leurs ~mes hvaient en commun un certain fond de r~sonance qui donne/~ leurs pensdes une tonalit~ pareille. II serait peut-~tre excessif de faire de Maurice de Gu~rin un pr~curseur du Symbolisme. Toutefois, si la po~sie intime et personnelle proprement dite tient une place bien modeste dans son oeuvre, on pourrait y glaner des vers qui, par la fraicheur de l'inspiration, par une certaine ldg~ret~ d'allure, par l'harmonie du rythme, rappellent la ,,mani~re" de Verlaine. Des vers comme les suivants ne sont-ils pas assez ,,lyriques" pour qu'il convienne de faire quelques rdserves au jugement par trop exclusif de Robert de Souza: ,,On peut hardiment avancer que jusqu'/~ Verlaine le v~ritable lyrisme sentimental ne rut point connu en France." 1) Aux lours de mer belle et sereir Elle s'en iratt par la plaine, ar la plaine humide volant Avec les oiseaux et la brise Dont l'aile gracieuse /rise L'onde pour cueillir en aUant La /rafcheur que l'onde r~pand. Pourtant il est juste de reconnaitre que Verlaine, dans ses Po?mes S a t u r n i e n s et dans L a B o n n e C h a n s o n rut le p r e m i e r / l abandonner la ddfroque exotique et sublime du romantisme et ~ instaurer une po~sie d'dtats d'~me, harmonieuse et musicale, dont ie rythme suit fid~lement la courbe des pens~es. Que, si l'on essaye de d~finir le charme myst~rieux, la suggestion invincible qui se d~gage des vers de ,,ll pleure dans mon cceur . . . . ", ne faut-il pas t~ Robert de Souza, La Po6sie populaire et le lyrisme sentimental, p. 47. Braak. 253 Novalis et le Symbolisme frant;ais. avouer que ce charme consiste en la parfaite conformit6 entre le sentiment et l'image? Quoi de plus suggestif en effet que d~assimiler la tristesse que, par moments, la Vie distille dans le cceur, et dont le gofit amer se fait sentir au bord des l~vres: l l pleure sans raison Dans ce c~eur qui s'~c~eure au ruissellement monotone de la pluie! De telles po6sies ont l'air d'avoir ~t6 faites avec rien, d'etre immat6rielles comme l'~lme eile-m~me qui s'exhale en une plainte doucement sonore. C'est de cette po6sie que dit Novalis: ,,diese Poesie kann h6chstens einen allegorischen Sinn im Oroszen und eine indirekte Wirkung wie Musik haben". Et nous comprenons sans peine pourquoi Verlaine en voulait ~ cette rime riche parnassienne, ce ,,bijou d'un sou"; pourquoi il remplace la couleur par ia nuance, et quel merveilleux effet il tire de l'harmonie des consonnes, du rythme allit6r6 et des fausses rimes ~ l'int6rieur, qui brisent le rythme uniforme mieux que l'enjambement des romantiques et des parnassiens. Ecoutons encore le dernier tercet de , M o n r~ve familier": Son regard est pareil au regard des statues, E t pour sa voix lointaine, et calme, et grave, elle a L'inflexion des voix chores qui se sont tues. Par ces allit6rations ,,blanches et noires" jusqu'/l trois fois alterndes, le porte ne sugg~re-t-il pas l'impression de pas lents qui s'en vont; puis avec les deux derniers mots pr6c6dents ressaisis, le vers s'6tend, sans m~me une c6sure, comme en une longueur de 14 syllabes: ............ Elle a L'inflexion des voix chores qui se sont tues. C'est la ligne ind6finie des horizons d'outre-tombe, entrevue darts ,,sa parole". - - De pareils vers montrent clairement que Verlaine, le plus personnel ~ la fa~on de Baudelaire, pr6cis6ment parce que, selon i'expression un peu iourde de Bruneti~re ,,il repr6sente l'exasp6ration de la po6sie intime", appartient ~ la grande lign6e des v6ritables n6o-romantiques. Faut=il s'6tonner de ce que Verlaine a tit6 de l'oubli les po6sies de Mine Desbordes-Vaimore, dont certaines strophes, pour l'accent, le mouvement et le rythme rappellent exactement sa mani~re? Qu'on 6coute cette plainte m61odieuse et mis6ricordieuse qui porte le titre de ,,Qu'en avez-vous fait?", que l'on compare: comme an pauvre enlant Quitt~ par sa m~re, Comme un pauvre enlant Que rien ne d~1end. Vous me laissez l~ Dans ma vie am~re Vous mE laissez l~ E t Dieu volt cela! . . . . Braak. 254 Novalis et le Symbolisrne fran~;ais. avec le lyrisme int6rieur de: Un grand sommeil noir Tombe sur ma vie: Dormez tout espoir, Dvrmez route envie. Je ne vois plus rien, Je percls la mdmoire Du m a l e t clu bien . . . . 0 la triste histoirel 1) C'est de Marceline Desbordes que Sainte-Beuve darts ses Causeries d u L u n d i 6crit qu'eile 6tait plus q u ' u n porte, 6tant ia po6sie elle-meme. Miehelet rendit hommage /l son grand t a l e n t p a r les paroles suivantes: ,,Le po6te ie plus chaleureux du si6cle est une f e m m e " . E n pronon~;ant ce j u g e m e n t Michelet a dfi se souvenir de po6sies telles que: R~ve cl'une ]emme, Pridre de [emme, Souvenir, L a dermdre ]leur, et darts lesquelles le po6te a chant6 route sa tendresse, route sa passion, sa douleur et son deuil en une langue qui 6tait la po6sie m6me. - - Ce qui fait le charme de ces po6sies, c'est d ' a b o r d ia fusion parfaite de l'id6e et de l'image, c'est i'absence complete de t o u t 616ment oratoire, c'est enfin l'accent s t r i c t e m e n t personnel qui s'en d6gage. Ces pogsies n'6veillent jamais l'id6e d ' a v o i r 6t6 faites ,,apr/~s coup", parce qu'elles ne trahissent aucun effort de composition: elles out 616 r6ellement v6cues, riles sont de la pogsie personnelle dans route la force du terme ,,Je persOnlicher, lokaler, temporeller, eigentiimlicher ein Gedicht ist, desto n~iher s t e h t es dem Centro der Poesie", dit Novalis. Dans sa belle biographie de Baudelaire Camille Mauclair ~) fair c e t t e lumineuse remarque: ,,Quand on ose et salt peindre sa vie, on rencontre forc6ment la Vie". La seule r6serve qu'ii convienne de faire & cette formule, un peu trop absolue en sa concision, c'est que le porte sache 6couter dans son &me ce qu'ii y a d'universellement humain, qu'il r6ussisse /l porter les choses temporelles sur le plan de l'6ternel et & trouver pour ses pens6es une forme p a r f a i t e m e n t ,,rdvglatrice de l'&me collective". Cette forme unique, les grands po6tes, tels que Baudelaire et Verlaine la t r o u v e n t toujours, et presque en se jouant. C'est que le vdritable po6te suscite en lui-mgme l'infuition de possgder u n Absolu, de participer au grand frisson de l'ineffable: sa vie intgrieure est un po6me. - - I1 a peut-6tre manqu6 /l Sainte-Beuve d'6tre un vrai t e m p 6 r a m e n t lyrique pour rgaliser cette pogsie intime et personnelle qu'il admirait r a n t chez les grands lakistes, tels que Wordsworth s). Cette pr6dilection ne s'expliquerait-elle pas p a r le fair que le po6te des Podsies de J o s e p h Delorme, a m b i t i o n n a n t d'6tre c o m p t 6 / l la suite d ' H u g o et de Lamartine, d u t se r a b a t t r e sur la pogsie pittoresque et famili6re pour se faire un n o m ? S'il en est ainsi, il est permis de croire que Sainte-Beuve ne se sentait pas attir6 II Verlaine, Sagesse IlL 21 Camille Mauelair. Charles Baudelaire Sa vie, son art, sa l(gende, p. 116. 3~ ,,Les Anglais out une lit[6rature bien sup6rieure /t la n6tre et surtout plus saine, plus pleine. - Je n'ai ~16 qu'un ruisselet de ces beaux lacs po6tiques, m61ancoliqueset doux" Lettre '3. M. l'abb6 Constantin Roussel. 1861. Braak. 2,55 Novalis et le Symbolismefranc,ais. vers ia po~sie intime par une vocation bien d~termin~e, mais qu'il jouait son r61e de novateur ~ bon escient. Toutefois les Consolations qui ouvrent selon lui ,,une veine plus mystique, plus id~ale, plus religieuse et morale", assignent au porte une place ~ part et bien marquee parmi les dii minores du romantisme. Quoique ce nouveau recueil soit d~di~ /t Victor Hugo, et que Sainte-Beuve avec sa flagornerie coutumi~re le pr~sente comme une ~manation de son g~nie, plusieurs pi~ces nous semblent plut6t d~river de la veine iamartinienne que de la mani~re d'Hugo 1). Pourtant ie spiritualisme de Sainte-Beuve s'enveloppe d'un mysticisme sensuel qui fait enti~rement d~faut dans les suaves ~l~gies de Lamartine Le goflt du p~ch~ est un sentiment tr~s moderne, et c'est peut-~tre ~ cause de cela que Verlaine reconnaissait en Sainte-Beuve un anc~tre. On sait d'ailieurs qu'en 1844 Baudelaire envoya ses premiers vers ~ Sainte Beuve en ajoutant: ,,D~cid~ment vous avez raison: Joseph Delorme, c'est ies Fleurs du mal de la veille. La'comparaison est glorieuse pour moi". Dans son ~tude sur La Podsie populaire Robert de Souza, voulant expliquer la banqueroute du romantisme dans la po~sie intime, constate que ,,ie sentiment inspirateur, s'~tant enfi~, transform~ en ~loquence, avait fauss6 sa spontan~it~ primitive et cette simplicit~ jamais d~voy~e dans la plus tragique passion qne garde l'inspiration populaire" ~). Or, on sait que le romantisme en s'essayant dans la po~sie populaire n'a produit que des paraphrases savantes et de froids pastiches, of~ l'absence de spontan~it~ primitive se fait cruellement sentir. Ni Victor Hugo darts ses Chansons des rues et des bois, ni B~ranger, ni Pierre Dupont n'ont ~t~ les v~ritables novateurs de la chanson populaire. D'abord ils n'avaient pas le sens du myst~re et du merveiileux, od se cornplait I' imagination populaire, et puis, la mesure syllabique de leurs vers ne tenait aucun compte de la valeur des roots, du jeu secret des rythmes, et des harmonies infiniment souples et ondoyantes de la po~sie populaire. C'est encore aux dii minores du romantisme qu'ii faut remonter pour renouer la chalne qui relie les symbolistes au romantisme allemand. Ainsi G~rard de Nerval, tr~s sensible au charme des vieilles chansons et ballades de sa province natale du Valois, comprit tout le parti qu'il y avait ~ tirer du vieux tr~sor national pour la r6novation de la po~sie. Dans la Boh~me galante il dit: ,,on parle en ce moment d'une collection de chants nationaux recueillis et publi~s /~ grands frais. L~ sans doute nous pourrons ~tudier les rythmes anciens conformes au g~nie primitif de la iangue, et peut-etre en sortira-t-il queique moyen d'assouplir et de varier ces coupes belles, mais monotones que nous devons ~t ia r~forme classique." C'est aux pontes symbolistes que revient I'honneur d'avoir r~alis~ toute la r~novation r~v~e par G~rard de Nervai, parce que leur cceur palpitait ~ l'unisson de la conscience de i'univers. Qu'on se rappelle le grand cri d'alarme jet~ par Hugo en t~te des Orientales 1) Sainte-Beu~eest ici (c.~t.d. dans les Consolations) un Lamartine ~. plusieurs Elvires, dont la chair veut chanter comme chaniaitl'~tmede I'auire"; (Barbey d'Aurcviny,Le Pays, 14 mai 1861). 2) Ouvragecit6, p. 47. Braak. 256 Novalis et le Symbolisme fran~ais. et qu'on veuille bien se rendre compte combien le m~me appel ~ l'ind~pendance est plus sincere clans la bouche de Paul Fort! C'est que pour les Symbolistes il s'agissait d'une libert6 r6elle, d'une rgnovation du fond m~me de la po6sie, c.-h-d, de I'inspiration po6tique, tandis que Hugo ne r6clamait en somme que le droit de violet les r~gles classiques. Et la preuve c'est que les Symbolistes, dgsireux d'affranchir la po6sie de tout ce qui l'entrave remirent en honneur le lyrisme rustique, la rime assonanc6e des vieilles ballades, les strophes libres moulges sur l'gmotion du po/~te. Paul Fort clans ses Ballades trancaises, Gustave Kahn darts ses Palais nomades, Vi616 Griffin dans sa Cueille d'avril, Morgas darts ses Cantil?nes, Verhaeren darts ses Campagnes hallucindes - - tous ces pontes, en exaltant l'~tme populaire avec son folklore et ses chansons na'ives, se trouvent en fin de compte avoir r6alis6 ce que Brentano et yon Arnim avaient tent6 darts leur recueil Des Knaben Wunderhorn. Ces pontes comprenaient que la po6sie n'est pas, selon i'expression de Herder ,,ein Privaterbteil einiger feinen gebildeten Manner, sondern eine Welt-und V01kergabe". L'art parnassien d6g6n6rait en un jeu de mandarins, dont le but supreme consistait en la difficult6 vaincue. Seuls les symbolistes comprirent que la pogsie s'6tiole sur les hauteurs de l'intelligence pure, et que ce n'est qu'en se retrempant aux sources vires de l'&me populaire qu'elle pousse ses plus belles floraisons et jette son plus vif 6clat. Car, ce qu'on appelle le divorce de l'art et de la vie, esp~ce de mysticisme esth6tique, cette tendance fficheuse se manifeste au moment pr6cis o~ le porte cultive la pogsie en serre chaude, de telle sorte que l'art supreme supplante l'inexistance r6alit6 et devient r6ellement une sorte de refuge contre la Vie. Cette attitude esth6tique en dehorn te la Vie convenait merveil[eus'ement Villiers de l'Isle-Adam, ,,cet 6vang6liste du r~ve et de i'ironie" selon l'expression de Remy de Gourmont. Villiers jouissait en spectateur courtois et d6sabus6 de rillusion grossi~re qui s'appelle la Vie, et c'est en composant des drames philosophiques tels que Claire Lenoir et Ax[l, et des contes fantastiques clans le genre de Poe qu'il trouva le moyen de supporter le spectacle de la Vie jusqu'au bout ~). Claire Lenoir et 4x~l sont construits sur la th~se fichtgenne que le monde extgrieur n'a de r6alit6 que celle que leur communique notre pens6e. ,,$ache une fois pour toujours - - dit l'occultiste, maitre Janus h Ax~l - - qu'U n'est d'autre univers pour toi que la conception m~me qui s'en r6fl6chit au fond de tes pens6es, car tu ne peux le voir pleinement, ni le connaitre, en distinguer m6me un seul point tel que ce mystgrieux point doit ~tre en la rgalit6". Ou encore dans Claire Lenoir: ,,L'id6e est la plus haute forme de la R6alit6. Le seui contr61e que nous ayons de la r6alit6, c'est i'id6e". Et de nouveau dans Ax~l: ,,Qui peut rien connaitre sinon ce qu'il reconnaSt? Tu crois apprendre, tu te retrouves: l'univers n'est qu'un pr6texte/~ ce d6veloppement de toute conscience." - - Qui ne voit que Fichte et Novalis ont pass6 par l/~? La derni~re citation n'a-t-elle pas tout l'air d'avoir 6tg inspir6e par Les Disciples ~ 8a[s? En effet, Novalis fair dire /~ un des disciples: ,,Was brauchen t) Voir l'analyse pgn~trante que, dans ses Prdtextes (p. 186-191) A n d r 6 0 i d e a f a r e de Vdra des ttistoires Souveraines de Villiers de l'lsle-Adam. Braak. 257 Novalis et le Symbolisme franqais. wit die trfibe Welt der sichtbaren Dinge mtihsam zu durchwandern? Die reinere Welt liegt ja in uns, in diesen Quell. Hier offenbart sich der wahre Sinn des groszen, bunten, verwirrten Schauspiels; und treten wit von diesen Blicken voll in die Natur, so ist uns alles wohlbekannt, und sicher kennen wir jede Gestalt." II y a dans l'oeuvre po~tique de Mallarm6 un soniaet, dans lequel le Cygne, faisant de rains efforts pour s'arracher /~ la ,,blanche agonie" de la glace qui emprisonne son corps, symbolise le porte que la dure r~alit6 qu'il m6prise emp~che d'atteindre sa vision 6blouissante. C'est h ce m6pris de la Vie que devait n6cessairement aboutir l'esth(~tique d6cadente des ~pigones du Symbolisme mallarm~en. Leur ferveur pour l'image 6vocatrice et suggestive fut telle qu'ils en arriv~rent / t n e plus consid~rer les objets pour eux-m~mes, mais pour le mot qui les repr~sente. Et ainsi, apr~s de multiples avatars, nous voyons le romantisme d6g6n6rer en un symbolisme herm~tique qui pousse/t l'exc~s le souci de faire myst6rieux pour faire vrai. ,,Die Bilder der Romantik sollten mehr erwecken als bezeichnen", a dit Heine. Evidemment Heine a voulu dire par I~ que selon l'esth~tique romantique route expression par l'art de vie directe ou transfigur~e doit tendre au Symbole, c'est h dire /~ la signification qui d~passe la chose signifi6e. Pour qu'on ne se m6prenne pas sur ses v6ritables intentions le porte allemand ajoute express~ment: ,,Die Bilder wodurch jene romantischen Geftihle erregt werden sollen, diJrfen ebenso klar und mit ebenso bestimmten Umrissen gezeichnet sein als die Bilder der plastischen Poesie." Car ce serait une erreur de croire que, pour exprimer la r6alit~ qui se d~robe derriere les apparences fugitives, il faille recourir /t ces images flottantes, impr6cises et vagues, ces ,,verworrene und verschwimmende Bilder", dont Heine fait justice. ,,Le symbole po6tique, dit Bruneti~re, et nous croyons que nul n'a donn6 une meilleure d~finition du symbole, le symbole po6tique est une fiction concrete, figur6e, plastique, mouvante et color,e, anim~e de sa vie propre, personnelle, ind~pendante, capable au besoin de se suffire h elle-m~me, de s'organiser et de se d6velopper, mais une fiction, dont la ,,correspondance" est enti/~re avec un sentiment ou une idle qu'elle d~.veloppe". 1) Le symbole ainsi entendu est le seul mode d'expression qui convienne une po6sie qui a pour but d'embrasser tout le r6el, en poussant vers les fronti~res inexplor~es du Moi. Cette po~sie de nuit et de cr6puscule que Novalis a chant6e dens ses Hymnes ~ la nuit, il se trouve qu'/~ quatre-vingts ans d'intervalle les Symbolistes l'ont r~alis~e. Et eette renaissance du romantisme 6tait devenue in6vitable du moment qu'au sortir de l'art parnassien et positiviste les Symbolistes, en r6int6grant l'id~alisme dans la conception du monde, retrouv~rent du m~me coup le sens du myst~re et de l' Inconnaissable. Cette vraie po6sie, d6gag6e de tout 616ment 6tranger, voil/t ce qui constitue I'apport d6finitif du Symbolisme. Le romantisme fran~ais, au contraire, en exaltant une sensibilit6 particuli~re et maladive, en d6daignant de renouveler s) F. Bruneti~re, Evolution de la Po(~sie lyrique, II, p. 249. I'/Vol. 7 Braak. 258 Novalis et le Symbolisme franc,ais. I'inspiratlon po~tique en m~me temps que la forme po~tique, a fait fausse route avec Hugo. S'il est une po~sie d'int~riorit~, capable de parcourir route i'~chelle des sensations humaines, depuis l'angoisse pascalienne de Baudelaire jusqu'~ la sublime tendresse de Verlaine, en passant par la douce et morbide langueur d'Albert Samain, s'il est une po~sie profonddment vraie, exprimanr ia passion sans emphase, aussi riche en modes d'expression qu'elle est in~puisable en ses motifs, une po~sie enfin capable de ,,sugg~rer tout l'homme par tout l'art", ce ne sont assur~ment pas les Romantiques qui l'ont invent~e. De cette po~sie, les dii minores du Romantisme ont eu des clart~s, des illuminations soudaines. C'est fi eux, e'est ~ G~rard de Nerval, Maurice de Gu~rin, ~ Sainte-Beuve, A M me Desbordes--Valmore, /t Villiers de l'Isle-Adam qu'il faut remonter pour r~tablir la filiation entre les symbolistes et le romantisme allemand. C'est dans leurs oeuvres qu'on entend par moments ie son pur de la vraie podsie lyrique, exempte de fausse sensibilitd et de rh~torique ronflante. Darts sa Romantisehe Schule H a y m caractdrise en ces termes la grande pottle de l'oeuvre de Novalis pour la r~novation de la po~sie: ,,mit der gr6szten Bestimmtheit spricht er es aus, dasz im Grunde das grosze R~ithsel des $eins yon dem Augenblick an gel6st sei wo der Mensch auf den Einfall gekommen, in sich selbst den absoluten Vereinigungspunkt aller Gegens~itze, den Mittelpunkt der bish~" getrennten Welten zu suchen". R~unir en soi, par un magistral effort d'intuition esth6tique, ces mondes ~pars, le monde des formes matdrielles et le monde spiritu'el, constater I'identit~ du Moi et du non-Moi, op~rer la synth~se du r~ve et de I'apparence, c'est vers ce but que tend tout I'effort du Symbolisme, et c'est par 1/~ que la po6sie symboliste se relie au romantisme allemand. C'est en ce sens qu'on peut d~finir le Symbolisme comme un v~ritable n~o-romantisme. De nos jours il y en a qui regardent le romantisme cornme un danger pour l'avenir de la po~sie. Les ap{~tres d'une po~sie tout intellectuelle, ceux qui voudraient revenir ~ une esp~ce de n6o-classicisme, feraient peut-~tre bien de consid~rer qu'il n'y a qu'une po~sie.qui air quelque chance de durer: celle qui a ses racines profondes darts tout ce que la po~sie de tous les si~cles a con~u de podsie vraie, celle qui s'inspire de cette parole f~conde de Novalis: ,,Das Herz ist der Schlfissel der Welt und des Lebens". S. BRAAK. Winschoten. SUR DEUX VERS DE GUIDO GUINIZELLI. Un des sonnets les plus curieux de Guinizelli est adress6 ~ une vieiUe femme, qu'il accable d'invectives et d'impr6cations. Ces vers sont d'un r6alisme qui 6tonne chez ce th6oricien de l'amour, et ils justifient jusqu'~ un certain point l'interpr6tation que Torraca a donn6e du terme de ,,doux style nouveau". I1 dit ,,Con la scuola del dolce stil novo si ritorna alia vita reale, alia schiettezza delle impressioni, alia sincerit/t dei sentimenti e deile passioni . . . . Di questo . . . . troviamo i primi indizi nei versi dei bolognese messer
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An approach to the didactics of physics for structural engineering from an artistic perspective
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Ade et al. - An approach to the didactics of physics for structural engineering from an artistic perspective Kinetics of the Electrode Reaction at the H 2 H 2 O Porous Pt/Stabilized Zirconia Interface Junichiro Mizusaki, Hiroaki Tagawa, Kensuke Isobe et al. - View the article online for updates and enhancements. This content was downloaded from IP address 191.95.137.246 on 14/11/2021 at 15:43 This content was downloaded from IP address 191.95.137.246 on 14/11/2021 at 15:43 This content was downloaded from IP address 191.95.137.246 on 14/11/2021 at 15:43 1674 (2020) 012012 IOP Publishing doi:10.1088/1742-6596/1674/1/012012 1674 (2020) 012012 doi:10.1088/1742-6596/1674/1/012012 Content from this work may be used under the terms of the Creative Commons Attribution 3.0 licence. Any further distribution of this work must maintain attribution to the author(s) and the title of the work, journal citation and DOI. Published under licence by IOP Publishing Ltd 1 E-mail: henrygallardo@ufps.edu.co E-mail: henrygallardo@ufps.edu.co E-mail: henrygallardo@ufps.edu.co Abstract. The use of physics in structural engineering requires the combination of its logical strength with social sensitivity. Logical strength is provided by mathematics and physics with practical solutions and new thinking relationships. Social sensitivity is achieved by inserting this "hard" knowledge into the solution of community problems. It is desirable that the teaching of physics and its applications prioritize holistic knowledge over mechanicity and that this process be similar to the one followed by the artist when he conceives his work: he dreams it, tries it, feels it, and adjusts and delivers it after having understood it with his whole being. In terms of curriculum, it is advisable to rethink the contents, encourage the use of majeutics, reduce standardization, personalize evaluation, and abolish the belief that there can be useless knowledge. An approach to the didactics of physics for structural engineering from an artistic perspective J F Márquez Peñaranda1, H J Gallardo Pérez1, and M Vergel Ortega1 1 Universidad Francisco de Paula Santander, San José de Cúcuta, Colombia 2. Being and doing, wisdom and knowledge There is a general confusion about being and doing [5,6]. Most people identify with what they do and claim that this is what they are. But in reality "being" is essential, while "doing" is circumstantial. Being is like the sea, while doing is more like the waves. It is very important that the disciple does not lose sight of the fact that being is what he does and as such he can adapt that doing to the circumstances that arise. For example, a structural engineer should be able to adapt his knowledge to the real conditions of each community. It is not fair to specify for a house to be built on the top of a mountain the same materials, the same construction techniques, and the same rigor that is the norm in the cities, since doing something like this would impose enormous costs of all kinds on the mountain family. There must be a connection between being and doing. That connection can be sensitivity. The sensitivity of a structural engineer recognizes that the mountain family needs a particular solution based on concepts of stability and resistance of the house to be built. These concepts must involve the materials and labor available in the mountain, the availability of economic resources and above all the tranquility of the family. The manifestation of being is wisdom, the trace of doing is knowledge. A wise man knows, but not necessarily a man who knows is wise. Wisdom is the sublimation of knowledge; she is sensitive and intelligent. Knowledge itself is circumstantial, it is permanently transformed even by denying itself. Wisdom grows even when it denies itself [3,7]. In the example of the mountain house, the structural engineer may have knowledge, but not necessarily be wise. He or she can become wise if he or she is humble in the face of doubt, but does not humble himself or herself in the face of fear. 2. Being and doing, wisdom and knowledge For example, if the engineer recommends using a type of tree to give structure to the house based on his or her knowledge of the mechanical and physical properties of the tree's dry wood, the homeowners might argue that such a tree is scarce, or that it is very important for the balance of smaller animals and plants, or that it represents the spirit of the forest (it is sacred), thus making it clear that they know not only the structural advantages of the tree, but that they are wise when they accept the uniqueness of that individual within the ecological and emotional balance of the community. g y In this writing, the words master and disciple are used to indicate people who "are" and can choose to "do", that is, build themselves up as "wise". In contrast, when the words teacher and student are used, the intention is to indicate that "doing" takes precedence over the idea being presented. 1674 (2020) 012012 doi:10.1088/1742-6596/1674/1/012012 Journal of Physics: Conference Series "defenses" for "dirty" environments; that genetically the teacher is weaker than the student to live in the country environment; that the teacher's digestive condition was caused by something different from the consumption of water from the stream he took as a "scapegoat"; that the teacher is inventing a story to support what he learned theoretically. In short, it is undeniable that the absolute truth that the teacher intends to teach is not infallible. As in any teaching process, the teaching of physics in structural engineering cannot be detached from the substrate which is composed of the student's previous intuitive and experimental knowledge and his/her availability for the use of exact sciences [4]. III International Seminar on Pedagogical Practice Journal of Physics: Conference Series 1 1674 (2020) 012012 IOP Publishing doi:10.1088/1742-6596/1674/1/012012 1674 (2020) 012012 IOP Publishing doi:10.1088/1742-6596/1674/1/012012 1. Introduction Making an analogy with biology and chemistry, it is worth saying that the disciple grows on a substrate that allows him to feed and subsist within an environment that can be hostile or friendly. That substratum is made up of the predecessor masters and the contemporary masters who are not only those who are recognized as having a title but also family members, friends, antagonists and the environment itself [1,2]. Some of them are sowers, others are reapers. The former protects the disciple's opportunities for infinite growth while the latter will try to cut off any sprouts of lateral thinking that go outside the norm. Both are necessary and help maintain the balance if they are given in their natural proportion. The disciple, contrary to what Locke (17th century) maintained, is not a Tabula Rasa, but brings ancestral knowledge that he permanently adapts according to his current experiences. Recognizing this is important if one wants to achieve a naturalized teaching, understanding that this expression refers to the process of awakening in the disciple his capacity to shape his own reality, not a standardized one [3]. As an example, let's think of a classroom where there are two actors called students and teachers. In reality, they are both disciples because they are each being formed from their own experience, but let us accept that the teacher has a socially recognized power over the student and that the student accepts that power because it benefits him in terms of the practical. Let us suppose that the student has grown up in the field and has drunk without reserve from whatever source he finds. When he arrives at school the teacher teaches him that all the water must be treated before it is drunk to avoid illness which induces a doubt in the mind of the student who asks the teacher if he has drunk from a nearby stream. The teacher, who is a citizen, will say that he or she just arrived but that he or she became ill the next day and had to be treated for a digestive tract condition. The doubt arises in the student because from experience he knows that this water does not hurt. Depending on the reason, there would be an endless number of explanations for this difference: that the teacher grew up in a "clean" environment and did not develop 1 1674 (2020) 012012 doi:10.1088/1742-6596/1674/1/012012 Journal of Physics: Conference Series the collapse of a structure, not only to settle for calculating the numbers. It is necessary to listen to and respect the emotions of everyone in the classroom and try to understand that consensus does not necessarily imply renunciation, but rather is a social agreement. In order to speak the same language, when defining a structural demand in terms of a range of numerical values, it is accepted that it is a brief representation of the possible threats that the structural element may have rather than an all- encompassing concept. the collapse of a structure, not only to settle for calculating the numbers. It is necessary to listen to and respect the emotions of everyone in the classroom and try to understand that consensus does not necessarily imply renunciation, but rather is a social agreement. In order to speak the same language, when defining a structural demand in terms of a range of numerical values, it is accepted that it is a brief representation of the possible threats that the structural element may have rather than an all- encompassing concept. p g p Physics and metaphysics cannot exist without each other and so the completeness of any knowledge should be considered [9,10]. For example, the teaching of mechanical physics related to the concept of force cannot lose sight of the fact that it is a manifestation of something that has not yet been explained in terms of infallible observations and abstractions. The teacher and his disciple could be justifiably humble in accepting their ignorance of the first source of what we call force. This humility or awe in the face of this manifestation, which, although inexplicable, has measurable effects, can give us an example of how we can integrate (or globalize) the reverie with logic. We could talk about the law and the laws; it would be very convenient to accept the existence of the Law that we cannot understand and its manifestation in what we can explain by means of laws that we deduce with logic, from observation. The principle of uncertainty and quantum mechanics are good examples of the advance of physics within a universe that is more and more alien to reason, but whose effects can be predicted in practical terms as long as we adequately delineate those terms. 4. Thinking and learning Our thinking machine is highly efficient by applying algorithms that are based on loops [12]. The processes of structural analysis and design, being logical, demand in the disciple the formation of more or less stable mental loops that allow to get to propose works that become concrete in the physical world in the form of buildings and bridges. However, this factory of loops can work very well if the head of operations is chosen to think holistically with all his sensitivity and openness. In other words, this is what we have always heard about training professionals in values; this implies helping to awaken sensitivity in the midst of the whole gear of logical loops. Managing emotions is a key aspect in the training of new professionals because it is necessary that they grow in real environments without forgetting the ideals [13,6]. The observation and acceptance of one's own emotions is perhaps the most important step in such management [14]. The next step is linked to becoming aware of whether that emotion contributes to or hinders the growth that we want to achieve. Finally, we arrive at the adjustment of the emotion. It is curious that the proposed classifications define more negative emotions than positive ones [8,14]. For example, one widely accepted classification speaks of five negative emotions and one positive one. This seems to show that perhaps the most accepted emotion is joy and does not require any subdivisions. Perhaps joy is the ultimate emotion, the one with the most energy and the one that allows for true learning. In contrast, within the negative emotions, fear seems to have the greatest power and be the generator of the other four. Here it is important to emphasize that learning is built on doubt and happy learning based on doubt is possible, but once fear appears the learning tends to stagnate. Being aware of this is very important when establishing teaching strategies. Modern education is based on standardization [15]. Content, timetables, forms of evaluation and social validation have been standardized. This is justified by the large size of the populations that make up today's societies and by their need to communicate in the same language [10]. However, any excess is harmful and we have fallen into the idolatry of knowledge, forgetting about wisdom. 1674 (2020) 012012 doi:10.1088/1742-6596/1674/1/012012 The fact that we cannot perceive and measure something is not irrefutable proof that it does not exist [3,11]. 3. The brain hemispheres: east and west As physical entities we have a command center called the brain which some experts define as "a process rather than an organ" [8]. Beyond the existing discussion about the veracity of the preference of each brain hemisphere for logical or recreational activities, in this section an analogy is made and it is used to raise an important question in the learning of structural engineering. It is said that the right hemisphere of the brain prefers art while the left one prefers mathematics. In the history of the continents, one can see that the East has developed fundamentally on cultures based on the intangible (let's say, from dreaming) while the West has given rise to the civilization of the tangible (which is achieved through logic). However, globalization is permeating both hemispheres of the world map and is fostering a much richer experience than that gained from isolated cultures. It is possible to motivate a similar effect in our teaching work by training ourselves and helping to awaken our disciples from a holistic vision. When we teach, it is necessary to permanently contextualize the knowledge: if we teach how to calculate the resistance of a beam, it is important that we insist that this parameter can save many lives by avoiding 2 1674 (2020) 012012 IOP Publishing doi:10.1088/1742-6596/1674/1/012012 1674 (2020) 012012 IOP Publishing doi:10.1088/1742-6596/1674/1/012012 1674 (2020) 012012 g doi:10.1088/1742-6596/1674/1/012012 1674 (2020) 012012 doi:10.1088/1742-6596/1674/1/012012 1674 (2020) 012012 doi:10.1088/1742-6596/1674/1/012012 being more like that of a machine. Science and paracism seem to admit that we are indeed very refined machines, although the former is based on observation and the latter on flashes of creativity and lateral thinking. The conditions are now in place within the thinking of the disciples to admit a balanced fusion of science and para-science, that is, of the measurable with the dreamable. That is why structural engineering can continue to rely on materials and techniques that have worked for centuries and millennia, but it can also ask itself questions about the possibility of "living" materials that grow and adapt to the immediate demands of the environment: Why not imagine a structure that anticipates its loads and strengthens its elements and connections according to its own prognosis? Thought is plastic and ductile but typically standardization makes it rigid and fragile [8,9,12]. Thought adapts and can develop without limit if the conditions are present for plasticity and ductility to be allowed in the teaching process. When a student asks the reason for something, the teacher's answer should be totally transparent so that those conditions are met; if the teacher "knows" the answer should accompany his or her answer with the possible origins and shortcomings of that knowledge, it should include a "but" that shows that nothing is totally true or totally false within what we "know"; if the teacher "does not know" the answer, he or she should say so and take advantage of that opportunity so that together with his or her students that knowledge is achieved. Teaching that encourages the plastic and ductile growth of thought can be positively supported by error and the recognition of the limitations of what is admitted to be true. When a structural engineering student asks his teacher why only 7 or 11 bar diameters are used within the design and the teacher answers "because that is the way it is", the opportunity is lost to illustrate during the next minute of class the history and commercial convenience of bar diameter standardization within the steel industry; a discussion could also be proposed on the theoretical and practical possibilities it would have if we could develop procedures with which the bar could be extruded on site according to our most precise design. 1674 (2020) 012012 doi:10.1088/1742-6596/1674/1/012012 This way of communicating what is known can allow a natural development of what the student can achieve not only with the knowledge of the state of the art but with his own creativity, with his capacity to dream. All the manifest, all the diversity, is natural but not necessarily convenient. Convenience is a practical matter, imposing limits to minimize the effort that change and adaptation demand. Particular convenience does not exist, it is only possible if it occurs collectively and that is why it is an eminently practical matter that is linked to the way we communicate. On the other hand, collective peace does not exist because it is an achievement of the individual [5]. The harmony of teaching can only be achieved if these three concepts are reconciled: everything that is manifest is natural, convenience chooses what is accepted from the manifest, peace accepts the totality from the individual's point of view. The recognition of the equality between master and disciple and between disciples is the cornerstone of a free teaching. The teacher who admits to questions and doubt from his students about what he teaches without feeling hurt is surely accepting that equality. On the other hand, the diversity of cultural, gender and religious expressions can bring much richness and encourage reconciliation between nature, convenience and peace if they are properly reconciled. As a brief reflection on this section, let us think about the familiarity of these words: knowledge = unknowing (without foundation, mobile, not permanent), reason and co-reason (heart, the companion of reason, sensitivity and reason). 4. Thinking and learning The obsession for perfection, the slavery of the measurable, and the anguish for productivity has taken us away from the enjoyment of knowledge just for the sake of knowing. Today, practically everything a student learns is a function of his immediate functionality, of his possible productivity. For example, in structural engineering education it is rare to find teachers who know the history of art and architecture and their influence on the design of structures. These professors can be highly efficient with their calculations, but they are not always sensitive to what they teach and to whom they teach, resulting in their work 3 III International Seminar on Pedagogical Practice Journal of Physics: Conference Series 1674 (2020) 012012 IOP Publishing doi:10.1088/1742-6596/1674/1/012012 IOP Publishing 1674 (2020) 012012 IOP Publishing doi:10.1088/1742-6596/1674/1/012012 5.2. Example We want to understand how the structure of a tree behaves in a zone of the tropics. How could this understanding be induced in a student? It may be helpful to look at an actual tree, a video or photographic image, or a drawing such as the one shown in Figure 1. Channeling questions might be: What are the peculiarities of its movement, and how might the fact that it does not fall apart be described numerically? g y Within the answers may appear statements such as: the tree has roots that support it, the tree moves with the wind, there's sound caused by the leaves and by the crunching of some branches, there's leaf loss in the movement, the tree gets constantly wet and dry, the tree doesn't fall apart because it's stronger than the wind, to prevent it from falling to pieces, we should express numerically that the resistance of the tree should always be greater than or equal to what the wind does to it. These answers show that intuitively the student knows about the need for a foundation (roots), the existence of transitory loads (wind), the deformability of the tree materials, the energy transformation that occurs in a system (there is sound and heat), the variability of the load (leaves fall and water can appear and disappear on the branches and trunk), the need for an equation based on resistance and demand forecasts and many other concepts useful in the approach of mathematical models of structural engineering. To address the problem in numerical terms, it is advisable to take stock of some previous knowledge or concepts: density or unit mass, centroid, center of gravity, lever arm, force, momentum, among others. In this state it can be useful to ask questions to improve the knowledge of orders of magnitude of some physical quantities in the engineering problem being studied: Is the tree heavier or lighter than you, what happens if the tree falls into a nearby lake, can the tree grow taller than a building. It is possible to roughly "scale up" the different parts shown in Figure 1 and get "orders of magnitude" that can serve as a guide for trying some numerical answers. For example, the tree is almost three times the height of an adult man and the diameter of its trunk can be on the order of twice that of the man's body. 5.1. Some proposals We propose to train initially from the general to the particular and then encourage expertise from the particular. Before starting the mentioned courses, it is convenient to include a conceptualization course that includes concepts of the relationship between internal and external forces with the most likely numerical ranges to be found in any type of structure studied in an undergraduate program. Therefore, not only will the understanding of the scope of structural engineering be achieved, but also the representative orders of magnitude will be fixed in the results of the analysis and design. The proposed course will encourage calculation by hand or with basic devices such as scientific calculators and freehand drawing. This will strengthen the relationship between fine motor skills and abstraction. Moreover, it will help students to understand that they do not necessarily need complex devices with inaccessible hardware and software to solve any kind of problem in a responsible way. Accuracy does not necessarily imply efficiency; a student may be very skilled at operating software, but may not necessarily know what the results and data mean [16,17]. The proposed course could be enriched with the abundant use of images and simple scale models that can be felt and observed by the students. This experience helps to fix concepts (form general loops) that can then be "broken down" and structured into smaller, more expert loops. For example, when a student bends a rubber bar, he or she not only feels the restitution force that is generated, but may also observe small changes in texture and some heat in some parts which may induce questions about what effect these developments have on the study of structural analysis. 1674 (2020) 012012 doi:10.1088/1742-6596/1674/1/012012 The study of the above subjects must be consistent, mutually inclusive. The training of a structural engineer requires an understanding of each of the parts and how they interact: an expert in structural analysis does not necessarily know when a structure is safe and vice versa, someone who knows how to design does not necessarily know how to analyze the structure properly. However, here it is worth to say that the physics, particularly the mechanics, have a paramount importance in the teaching of the structural teaching. 5. Results Physics is a fundamental part of a typical program of the structural engineering line within the civil engineering career that basically includes the following subjects with their respective ramifications: (a) static: it focuses on the relationships between external forces and internal forces in rigid bodies. It studies balance and stability; (b) strength of materials: it studies the relationship between stress and deformation at negligible speed of deformable bodies built with materials of known properties; (c) structural analysis: It combines the concepts of equilibrium and stability with the resistance of materials to predict internal forces and deformations in structures composed of elements from one or several types of materials; (d) structural design: It uses the results of structural analysis to guarantee the resistance and rigidity required in real structures. 4 1674 (2020) 012012 IOP Publishing doi:10.1088/1742-6596/1674/1/012012 III International Seminar on Pedagogical Practice 1674 (2020) 012012 IOP Publishing doi:10.1088/1742-6596/1674/1/012012 Journal of Physics: Conference Series 1674 (2020) 012012 doi:10.1088/1742-6596/1674/1/012012 words, the tree may measure about 3 × 1.70 m = 5.10 m from base to top and its diameter is about 2 × 0.30 m = 0.60 m. If the solid volume of the branches is of the order of one tenth of that occupied by the whole tree, then the approximate volume of the "compressed" tree would be of the order of 5.10 × 3.14 × 0.60! × 1.10 = 6.35 m". As the wood weighs around 6 KN m" ⁄ it could be estimated that the weight of the tree is around 6 × 6.35 = 38.07 KN (about four tons). If the student observes that due to the wind the tree moves back and forth up to 20 cm in the crown of the tree and if it is accepted that the center of gravity of the tree is 2/3 of the total height, then it could be said that the center of gravity moves at a rate of approximately 2 3 ⁄ × 20 = 13.33 cm to each side. If these data are used the moment that demands the trunk in its leg is of the order of 38.07 KN × 0.1333 m = 5.08 KNm which allows to anticipate that the resistance of the trunk and the root is at least 5.1 KNm. words, the tree may measure about 3 × 1.70 m = 5.10 m from base to top and its diameter is about 2 × 0.30 m = 0.60 m. If the solid volume of the branches is of the order of one tenth of that occupied by the whole tree, then the approximate volume of the "compressed" tree would be of the order of 5.10 × 3.14 × 0.60! × 1.10 = 6.35 m". As the wood weighs around 6 KN m" ⁄ it could be estimated that the weight of the tree is around 6 × 6.35 = 38.07 KN (about four tons). If the student observes that due to the wind the tree moves back and forth up to 20 cm in the crown of the tree and if it is accepted that the center of gravity of the tree is 2/3 of the total height, then it could be said that the center of gravity moves at a rate of approximately 2 3 ⁄ × 20 = 13.33 cm to each side. 1674 (2020) 012012 doi:10.1088/1742-6596/1674/1/012012 If these data are used the moment that demands the trunk in its leg is of the order of 38.07 KN × 0.1333 m = 5.08 KNm which allows to anticipate that the resistance of the trunk and the root is at least 5.1 KNm. The goodness of the calculations can be verified using e.g. finite element software. In this case the use of software can be very useful for the teaching process because it is used to check what was deduced mentally [18-22]. Figure 1. Example of conceptual induction of structural behavior. Figure 1. Example of conceptual induction of structural behavior. 5.2. Example In other 5 III International Seminar on Pedagogical Practice Journal of Physics: Conference Series 1674 (2020) 012012 IOP Publishing doi:10.1088/1742-6596/1674/1/012012 1674 (2020) 012012 IOP Publishing doi:10.1088/1742-6596/1674/1/012012 III International Seminar on Pedagogical Practice Journal of Physics: Conference Series 1674 (2020) 012012 IOP Publishing doi:10.1088/1742-6596/1674/1/012012 1674 (2020) 012012 doi:10.1088/1742-6596/1674/1/012012 References ¿Cómo Pudo el Cerebro Generar Emociones, Sentimientos, eas y el Yo? (Barcelona: Destino) [8] Damasio A 2010 Y el Cerebro Creó al Hombre. ¿Cómo Pudo el Cerebro Generar Emociones, Sent Ideas y el Yo? (Barcelona: Destino) Ideas y el Yo? (Barcelona: Destino) [9] Einsten A 2010 Mis Ideas y Opiniones (Barcelona: Aguilar) rari Y 2018 21 Lecciones para el Siglo XXI (Barcelon [11] Santaolla J 2016 El Bosson de Higgs no te va a Hacer la Cama. La Física Como Nunca te la Han Contado (Alcobendas: La esfera de los libros) References El Futuro del Trabajo en la Era de la Automatización (Barcelona: Debate) [16] Botuzova Y 2020 Advantages and disadvantages of using mathematical software in the work of mathematical circle Випуск Серія: Математичні науки 74 12 [17] Consortini A 2014 Advantages and disadvantages of using computers in education and research Proceedings of SPIE Volume 9289, 12th Education and Training in Optics and Photonics Conference (Porto: SPIE) [18] Neves R Neves M, Victor T 2013 Modellus: Interactive Computational Modelling to Improve Teaching of Physics in the Geosciences Computers & Geosciences 56 119 [20] Ramma Y, Bholoa A, Watts M, Nadal P 2017 Teaching and learning physics using technology: Making a case for the affective domain Education Inquiry 9 210 [21] Bednarova R and Merickova J 2012 Learning and teaching with technology e-learning as a motivation in References [1] Márquez-Peñaranda J 2016 Modelo de docencia centrada en el discípulo una propuesta para hacer más humanizada la docencia Respuestas 6(1) 35 [2] Savater F 1996 Ética para amador (Barcelona: Ariel) [3] Osho 2007 Intuición. El Conocimiento que Trasciende la Lógica (Miami: Editorial DeBolsillo) [4] Kaku M 2012 Física de lo Imposible. ¿Podremos ser Invisibles, Viajar en el Tiempo y Teletransportarnos? (Miami: Editorial DeBolsillo) [5] Ouspensky P 2008 Tertium Organum: El Tercer Canon del Pensamiento; Una Clave para los Enigmas del Mundo (Buenos Aires: Kier) [6] Tashi, Y 2006 El sentido Común (Buenos Aires: Ediciones Universales) [7] Stuart J 1998 La Naturaleza. Filosofía (Madrid: Alianza Editorial) [8] Damasio A 2010 Y el Cerebro Creó al Hombre. ¿Cómo Pudo el Cerebro Generar Emociones, Sentimientos, Ideas y el Yo? (Barcelona: Destino) [9] Einsten A 2010 Mis Ideas y Opiniones (Barcelona: Aguilar) [10] Harari Y 2018 21 Lecciones para el Siglo XXI (Barcelona: Debate) [11] Santaolla J 2016 El Bosson de Higgs no te va a Hacer la Cama. La Física Como Nunca te la Han Contado (Alcobendas: La esfera de los libros) [12] De Bono E 2017 Lógica Fluida. La Alternativa a la Lógica Tradicional (Barcelona: Paidós) [13] Bauman Z 2017 Reflexiones Sobre un Mundo Líquido (Barcelona: Paidós) e e e ces [1] Márquez-Peñaranda J 2016 Modelo de docencia centrada en el discípulo una propuesta para hacer más humanizada la docencia Respuestas 6(1) 35 É [7] Stuart J 1998 La Naturaleza. Filosofía (Madrid: Alianza Editorial) f ( ) amasio A 2010 Y el Cerebro Creó al Hombre. References References [1] Márquez-Peñaranda J 2016 Modelo de docencia centrada en el discípulo una propuesta para hacer más humanizada la docencia Respuestas 6(1) 35 [2] Savater F 1996 Ética para amador (Barcelona: Ariel) [3] Osho 2007 Intuición. El Conocimiento que Trasciende la Lógica (Miami: Editorial DeBolsillo) [4] Kaku M 2012 Física de lo Imposible. ¿Podremos ser Invisibles, Viajar en el Tiempo y Teletransportarnos? (Miami: Editorial DeBolsillo) [5] Ouspensky P 2008 Tertium Organum: El Tercer Canon del Pensamiento; Una Clave para los Enigmas del Mundo (Buenos Aires: Kier) [6] Tashi, Y 2006 El sentido Común (Buenos Aires: Ediciones Universales) [7] Stuart J 1998 La Naturaleza. Filosofía (Madrid: Alianza Editorial) [8] Damasio A 2010 Y el Cerebro Creó al Hombre. ¿Cómo Pudo el Cerebro Generar Emociones, Sentimientos, Ideas y el Yo? (Barcelona: Destino) [9] Einsten A 2010 Mis Ideas y Opiniones (Barcelona: Aguilar) [10] Harari Y 2018 21 Lecciones para el Siglo XXI (Barcelona: Debate) [11] Santaolla J 2016 El Bosson de Higgs no te va a Hacer la Cama. La Física Como Nunca te la Han Contado (Alcobendas: La esfera de los libros) [12] De Bono E 2017 Lógica Fluida. La Alternativa a la Lógica Tradicional (Barcelona: Paidós) [13] Bauman Z 2017 Reflexiones Sobre un Mundo Líquido (Barcelona: Paidós) [14] Vaillant G 2009 La Ventaja Evolutiva del Amor. Un Estudio Científico de las Emociones Positivas (Barcelona: Ridgen Institut Gestalt) [15] Openheimer A 2018 ¡Sálvese Quien Pueda! 6. Conclusions The harmony of the master-disciple relationship will manifest from the teacher-student relationship if the teaching is holistic. It is necessary to rethink the current value systems based on productivity and standardization to give way to educational processes that allow the plastic and ductile expression of thought. The harmony of the master-disciple relationship will manifest from the teacher-student relationship if the teaching is holistic. It is necessary to rethink the current value systems based on productivity and standardization to give way to educational processes that allow the plastic and ductile expression of thought. The formation of loops or logical algorithms in the mind of the structural engineering learner is valuable as long as it serves an open, universal mind. It is not enough to know how to add, it is necessary that it means that sum in each context in which it is applied. It is proposed to create a course of general concepts and orders of magnitude that connect common sense with expert knowledge before exposing students to specific knowledge of the application of physics in structural engineering. This course should be rich in the use of perceptual resources (visual, auditory, tactile) that allow an experience associated with each concept to be set as part of the language of a civil engineer dedicated to structural engineering. It is possible to train professionals with robust concepts that make responsible use of software resources for which it is necessary to insist that the software is at the service of the human, not the contrary. The proposal allows the teacher to develop from the physics class in their student’s skills that strengthen their mathematical physical thinking from the study of balance, stability, deformation and design of structures based on mathematical models inherent in physics. 6 6 1674 (2020) 012012 IOP Publishing doi:10.1088/1742-6596/1674/1/012012 III International Seminar on Pedagogical Practice Journal of Physics: Conference Series 1674 (2020) 012012 IOP Publish doi:10.1088/1742-6596/1674/1/0120 (Alcobendas: La esfera de los libros) [12] De Bono E 2017 Lógica Fluida. La Alternativa a la Lógica Tradicional (Barcelona: Paidós) [13] Bauman Z 2017 Reflexiones Sobre un Mundo Líquido (Barcelona: Paidós) [ ] f q ( ) [14] Vaillant G 2009 La Ventaja Evolutiva del Amor. Un Estudio Científico de las Emociones Positivas (Barcelona: Ridgen Institut Gestalt) [15] Openheimer A 2018 ¡Sálvese Quien Pueda! El Futuro del Trabajo en la Era de la Autom (Barcelona: Debate) [15] Openheimer A 2018 ¡Sálvese Quien Pueda! El Futuro del Trabajo en la Era de la Automatización (Barcelona: Debate) [15] Openheimer A 2018 ¡Sálvese Quien Pueda! El Futuro del Trabajo en la Era de la Automatización (Barcelona: Debate) [16] Botuzova Y 2020 Advantages and disadvantages of using mathematical software in the work of (Barcelona: Debate) [16] Botuzova Y 2020 Advantages and disadvantages of using mathematical software in the work of (Barcelona: Debate) [16] Botuzova Y 2020 Advantages and disadvantages of using mathematical software in the work of mathematical circle Випуск Серія: Математичні науки 74 12 otuzova Y 2020 Advantages and disadvantages of using mathematical software in the work of athematical circle Випуск Серія: Математичні науки 74 12 [17] Consortini A 2014 Advantages and disadvantages of using computers in education and research Proceedings of SPIE Volume 9289, 12th Education and Training in Optics and Photonics Conference (Porto: SPIE) [18] Neves R Neves M, Victor T 2013 Modellus: Interactive Computational Modelling to Improve Te Physics in the Geosciences Computers & Geosciences 56 119 [20] Ramma Y, Bholoa A, Watts M, Nadal P 2017 Teaching and learning physics using technology: Making a case for the affective domain Education Inquiry 9 210 q y [21] Bednarova R and Merickova J 2012 Learning and teaching with technology e-learning as a motivation in teaching physics Procedia-Social and Behavioral Sciences 64 328 [22] Stoica I, Morarua S, Mirona C An argument for a paradigm shift in the science teaching process by means of educational software Procedia-Social and Behavioral Sciences 2 4407
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Therapeutic Potential of TLR8 Agonist GS‐9688 (Selgantolimod) in Chronic Hepatitis B: Remodeling of Antiviral and Regulatory Mediators
Hepatology
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Therapeutic Potential of TLR8 Agonist GS-­9688 (Selgantolimod) in Chronic Hepatitis B: Remodeling of Antiviral and Regulatory Mediators Oliver E. Amin ,1 Emily J. Colbeck,1 Stephane Daffis,2 Shahzada Khan,2 Dhivya Ramakrishnan,2 Divya Pattabiraman,2 Ruth Chu,2 Holly Micolochick Steuer,2* Sophie Lehar,2† Leanne Peiser,2‡ Adam Palazzo,2 Christian Frey,2,§ Jessica Davies,1 Hassan Javanbakht,2¶ William M.C. Rosenberg,3 Simon P. Fletcher ,2 Mala K. Maini ,1 and Laura J. Pallett 1 BACKGROUND AND AIMS: GS-­9688 (selgantolimod) is a toll-­like receptor 8 agonist in clinical development for the treatment of chronic hepatitis B (CHB). Antiviral activity of GS-­9688 has previously been evaluated in vitro in HBV-­ infected hepatocytes and in vivo in the woodchuck model of CHB. Here we evaluated the potential of GS-­9688 to boost responses contributing to viral control and to modulate regu- latory mediators. BACKGROUND AND AIMS: GS-­9688 (selgantolimod) is a toll-­like receptor 8 agonist in clinical development for the treatment of chronic hepatitis B (CHB). Antiviral activity of GS-­9688 has previously been evaluated in vitro in HBV-­ infected hepatocytes and in vivo in the woodchuck model of CHB. Here we evaluated the potential of GS-­9688 to boost responses contributing to viral control and to modulate regu- latory mediators. that might enhance antiviral efficacy. Stimulation with GS-­ 9688 reduced the frequency of CD4+ regulatory T cells and monocytic myeloid-­derived suppressor cells (MDSCs). Residual MDSCs expressed higher levels of negative immune regula- tors, galectin-­9 and programmed death-­ligand 1. Conversely, GS-­9688 induced an expansion of immunoregulatory TNF-­ related apoptosis-­inducing ligand+ NK cells and degranulation of arginase-­I+ polymorphonuclear MDSCs. CONCLUSIONS: GS-­9688 induces cytokines in human peripheral blood mononuclear cells that are able to activate antiviral effector function by multiple immune mediators (HBV-­ specific CD8+ T cells, CD4+ follicular helper T cells, NK cells, and mucosal-­associated invariant T cells). Although reducing the frequency of some immunoregulatory subsets, it enhances the immunosuppressive potential of others, highlighting poten- tial biomarkers and immunotherapeutic targets to optimize the antiviral efficacy of GS-­9688. (Hepatology 2021;74:55-71). APPROACH AND RESULTS: We characterized the ef- fect of GS-­9688 on immune cell subsets in vitro in periph- eral blood mononuclear cells of healthy controls and patients with CHB. GS-­9688 activated dendritic cells and mononu- clear phagocytes to produce IL-­12 and other immunomodu- latory mediators, inducing a comparable cytokine profile in healthy controls and patients with CHB. GS-­9688 increased the frequency of activated natural killer (NK) cells, mucosal-­ associated invariant T cells, CD4+ follicular helper T cells, and, in about 50% of patients, HBV-­specific CD8+ T cells expressing interferon-­γ. Abbreviations: cDC, conventional dendritic cell; CHB, chronic hepatitis B; FOXP3, forkhead box P3; HLA, human leukocyte antigen; ICOS, inducible T-­cell co-­stimulator; IFN, interferon; mAb, monoclonal antibody; MAIT, mucosal-­associated invariant T cell; MDSC, myeloid-­derived suppressor cells; MEC, minimal effective concentration; MFI, mean fluorescence intensity; M-­MDSC, monocytic-­MDSC; MNP, mononuclear phagocyte; NK, natural killer; PBMC, peripheral blood mononuclear cell; PD-­1, programmed cell death protein 1; pDC, plasmacytoid dendritic cell; PD-­L1, programmed death-­ligand 1; PMN-­MDSC, polymorphonuclear-­MDSC; REC, Research Ethics Committee; TFH, CD4+ follicular helper T cell; TLR, toll-­like receptor; TRAIL, TNF-­related apoptosis-­inducing ligand; TREG, CD4+ regulatory T cells. Received June 19, 2020; accepted December 8, 2020. Received June 19, 2020; accepted December 8, 2020. Additional Supporting Information may be found at onlinelibrary.wiley.com/doi/10.1002/hep.31695/suppinfo. Supported by Gilead Sciences, Inc. * Arbutus Biopharma Corporation, Warminster, PA; † Genentech Inc., South San Francisco, CA; ‡ Bristol Myers Squibb, Seattle, WA; § Ideaya Biosciences Inc., South San Francisco, CA; ¶ SQZ Biotechnologies, Watertown, MA © 2021 The Authors. Hepatology published by Wiley Periodicals LLC on behalf of American Association for the Study of Liver Diseases. This is an open access article under the terms of the Creative Commons Attribution License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. p Additional Supporting Information may be found at onlinelibrary.wiley.com/doi/10.1002/hep.31695/suppinfo. Supported by Gilead Sciences, Inc. Abbreviations: cDC, conventional dendritic cell; CHB, chronic hepatitis B; FOXP3, forkhead box P3; HLA, human leukocyte antigen; ICOS, inducible T-­cell co-­stimulator; IFN, interferon; mAb, monoclonal antibody; MAIT, mucosal-­associated invariant T cell; MDSC, myeloid-­derived suppressor cells; MEC, minimal effective concentration; MFI, mean fluorescence intensity; M-­MDSC, monocytic-­MDSC; MNP, mononuclear phagocyte; NK, natural killer; PBMC, peripheral blood mononuclear cell; PD-­1, programmed cell death protein 1; pDC, plasmacytoid dendritic cell; PD-­L1, programmed death-­ligand 1; PMN-­MDSC, polymorphonuclear-­MDSC; REC, Research Ethics Committee; TFH, CD4+ follicular helper T cell; TLR, toll-­like receptor; TRAIL, TNF-­related apoptosis-­inducing ligand; TREG, CD4+ regulatory T cells. Received June 19, 2020; accepted December 8, 2020. Additional Supporting Information may be found at onlinelibrary.wiley.com/doi/10.1002/hep.31695/suppinfo. Supported by Gilead Sciences, Inc. * Arbutus Biopharma Corporation, Warminster, PA; † Genentech Inc., South San Francisco, CA; ‡ Bristol Myers Squibb, Seattle, WA; § Ideaya Biosciences Inc., South San Francisco, CA; ¶ SQZ Biotechnologies, Watertown, MA © 2021 The Authors. Hepatology published by Wiley Periodicals LLC on behalf of American Association for the Study of Liver Diseases. This is an open access article under the terms of the Creative Commons Attribution License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. pp y * Arbutus Biopharma Corporation, Warminster, PA; † Genentech Inc., South San Francisco, CA; ‡ Bristol Myers Squibb, ¶ * Arbutus Biopharma Corporation, Warminster, PA; † Genentech Inc., South San Francisco, CA; ‡ Bristol Myers Squibb, Seattle, WA; § Ideaya Biosciences Inc., South San Francisco, CA; ¶ SQZ Biotechnologies, Watertown, MA © 2021 The Authors. Hepatology published by Wiley Periodicals LLC on behalf of American Association for the Study of Liver Diseases. This is an open access article under the terms of the Creative Commons Attribution License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. View this article online at wileyonlinelibrary.com. DOI 10.1002/hep.31695 Potential conflict of interest: Dr. Khan is employed by Gilead. Dr. Daffis is employed and owns stock in Gilead. Dr. Ramakrishnan is employed and owns stock in Gilead. Dr. Pattabiraman is employed and owns stock in Gilead. Dr. Chu is employed and owns stock in Gilead. Dr. Steuer owns stock in Gilead. Dr. Peiser is employed and owns stock in Bristol-­Myers Squibb. Dr. Palazzo is employed and owns stock in Gilead. Dr. Frey owns stock in Gilead. Dr. Javanbakht is employed and owns stock in SQZ Biotechnologies and owns stock in Gilead and Roche. Dr. Fletcher is employed and owns stock in Gilead. Dr. Maini consults and received grants from Gilead, Hoffman La Roche, and Immunocore. Dr. Pallett consults and received grants from Gilead. Hepatology,  July 2021 AMIN ET AL. TNF-­related apoptosis-­inducing ligand (TRAIL), enabling them to engage with and eliminate T cells expressing the reciprocal receptor, TRAIL-­receptor 2 (TRAIL-­R2).(7,8) Another mechanism contributing to the suppression of HBV immunity is the expansion of arginase+ polymorphonuclear myeloid-­derived suppres- sor cells (PMN-­MDSCs), which deplete key nutrients required by T cells for proliferation and function.(9) causes more than 800,000 deaths a year due to HBV-­related complications such as cirrhosis and HCC.(1) In the absence of novel treatment strat- egies, it is projected that new cases of CHB will rise to three million per year by 2030.(2) Current approved therapies include long-­term antiviral suppression with nucleos(t)ide analogues and pegylated interferon-­α (IFN-­α). These treatments reduce viremia and improve patient outcomes but are rarely curative.(3) As a consequence, there is a pressing need for novel immunotherapeutic strat- egies to supplement existing direct-­acting antivi- rals to achieve durable immune control. One therapeutic approach in clinical development for CHB is to engage innate immune receptors such as toll-­like receptors (TLRs), which can exert both direct and indirect effects on the antiviral T-­cell and B-­cell response. A previous therapeutic strategy attempted to harness TLR7 signaling using the agonist GS-­9620 (vesatolimod). GS-­9620 induced sustained antiviral responses in animal models,(10,11) but failed to show therapeutic efficacy in patients with CHB.(12,13) Control of HBV is dependent on the coordinated action of both innate and adaptive immunity.(4) A major obstacle to HBV clearance in CHB is a dysfunctional adaptive response, characterized by a profound state of immune exhaustion and HBV-­specific T-­cell deple- tion.(5,6) The mechanism by which this dysfunction occurs is multifaceted, but likely driven by a combina- tion of ongoing high-­dose antigenic stimulation and the tolerogenic liver environment. Moreover, while the natural killer (NK) cell compartment can exert direct and indirect antiviral activity, they may also restrict effective antiviral immunity by deleting apoptosis-­ prone HBV-­specific T cells. Specifically, NK cells in the HBV-­infected liver up-­regulate the death-­ligand More recently, attention has turned to TLR8 acti- vation due to its anticipated ability to stimulate host immunity through the induction of pro-­inflammatory and immunomodulatory cytokines. Human TLR8 is predominantly expressed on the endosomal membrane of monocytes, macrophages, conventional dendritic cells (cDCs), and CD4+ regulatory T cells (TREG), and allows cells to respond to infection through detection of viral single-­stranded RNA.(14-­16) GS-­9688 (selgan- tolimod) is an oral selective small-­molecule agonist Therapeutic Potential of TLR8 Agonist GS-­9688 (Selgantolimod) in Chronic Hepatitis B: Remodeling of Antiviral and Regulatory Mediators Moreover, in vitro stimulation with GS-­9688 induced NK-­cell expression of interferon-­γ and TNF-­α, and promoted hepatocyte lysis. We also assessed whether GS-­9688 inhibited immunosuppressive cell subsets C C hronic hepatitis B (CHB) remains a global health concern with an estimated 260 million people infected worldwide. CHB C hronic hepatitis B (CHB) remains a global health concern with an estimated 260 million people infected worldwide. CHB 55 Hepatology,  July 2021 Hepatology,  July 2021 STUDY COHORT All participants were anti-­HCV and anti-­HIV antibody negative. Healthy controls were addition- ally anti-­HBV negative. Participants with CHB were stratified by HBV viral load (IU/mL; determined by real-­time PCR), HBsAg titer (IU/mL; determined by Architect; Abbott Laboratories, London, United Kingdom), HBeAg positivity, and serum alanine trans- aminase (ALT; IU/L) where appropriate (Supporting Table S1). ETHICAL APPROVAL This study was approved by the local ethics board of Brighton & Sussex (Research Ethics Committee [REC] ref: 11/LO/0421), London Brent (REC ref: 17/LO/0266), and University College London–­Royal Free Biobank (REC ref: 16/WA/0289). All partici- pants gave written, informed consent. In select exper- iments, whole blood was obtained from AllCells (Alameda, CA) and the MT Group (Van Nuys, CA). In this instance, consent was obtained from the donor or donor’s legal next of kin using internal review board–­approved authorizations. Study protocols con- formed to the 1975 Declaration of Helsinki guidelines, and samples/data were stored in compliance with the Data Protection Act 1998 & Human Tissue Act 2004. MEASUREMENT OF CYTOKINES BY LUMINEX A total of 1  ×  106 PBMCs/well were seeded in 96-­well round-­bottom plates in 200  µL cRPMI with GS-­9688 or ≤0.1% DMSO vehicle control, at 37°C. After 24 hours, culture supernatants were har- vested and stored at −80°C. Cytokine concentrations were determined by Luminex array (Bio-­Plex 200 System; Bio-­Rad Laboratories, Hercules, CA) or MAGPIX (Luminex Corporation, Austin, TX) with the following kits: Th1/Th2 cytokine panel (eBio- science, Inc., San Diego, CA), cytokine discovery fixed 45-­plex (Bio-­Techne, Minneapolis, MN) and a single-­plex IL-­12/IL-­23p40 (ProcartaPlex; eBio- science, Inc.). PBMC ISOLATION PBMCs were isolated using Pancoll (PanBiotech GmbH, Aidenbach, Germany) or Ficoll (GE Healthcare Sciences, Chicago, IL) by density centrifu- gation from heparinized blood. Cells were washed and resuspended in Roswell Park Memorial Institute 1640 medium (Life Technologies, Carlsbad, CA) contain- ing 10% vol/vol heat-­inactivated fetal bovine serum (HI-­FBS, Sigma-­Aldrich, St. Louis, MO; or Hyclone, GE Healthcare Sciences), 100 U/mL ­penicillin/strep- tomycin, 4-­(2-­hydroxyethyl)-­1-­piperazine ethane- sulfonic acid, β-­mercaptoethanol, and essential and non-­essential amino acids (cRPMI; all Thermo Fisher Scientific, Waltham, MA). Accordingly, in this study we have evaluated the immunomodulatory effects of GS-­9688 on various immune cells in vitro using freshly isolated peripheral leukocytes from healthy controls and patients with CHB, to understand its therapeutic potential for CHB. INVESTIGATIONAL DRUG of TLR8 in development for CHB. In vitro studies have demonstrated that cytokines induced in human peripheral blood mononuclear cells (PBMCs) by GS-­ 9688 reduce viral parameters in HBV-­infected pri- mary human hepatocytes.(17) Furthermore, GS-­9688 treatment was well tolerated and induced a sustained antiviral response in a subset of woodchuck hepatitis virus–­infected woodchucks.(18) Although these preclin- ical studies provide some insight into the antiviral effi- cacy of GS-­9688, they did not provide insight into the mode of action of GS-­9688 on human immune cells. GS-­9688 (selgantolimod) is a small-­molecule TLR8 agonist manufactured by Gilead Sciences Inc. (Foster City, CA).(17) Concentrations used are denoted in the figures/figure legends. ARTICLE INFORMATION: From the 1 Division of Infection & Immunity,  Institute of Immunity & Transplantation,  University College London, London, United Kingdom; 2 Gilead Sciences Inc., Foster City, CA; 3 Institute for Liver and Digestive Health,  University College London, London, United Kingdom. ADDRESS CORRESPONDENCE AND REPRINT REQUESTS TO: Laura J. Pallett, Ph.D. Division of Infection & Immunity Institute of Immunity & Transplantation University College London Rayne Building, 5 University Street London, WC1E 6JF, United Kingdom E-­mail: laura.pallett@ucl.ac.uk Tel.: +44-­0-­20-­3108-­2176 Rayne Building, 5 University Street London, WC1E 6JF, United Kingdom E-­mail: laura.pallett@ucl.ac.uk Tel.: +44-­0-­20-­3108-­2176 56 Hepatology,  Vol. 74,  No. 1,  2021 AMIN ET AL. Experimental Procedures ETHICAL APPROVAL ASSESSMENT OF MONONUCLEAR PHAGOCYTES, cDCs, AND PLASMACYTOID DENDRITIC CELL PHENOTYPE AND FUNCTION A total of 1 × 106 PBMCs/well were seeded in 96-­ well flat-­bottom plates in cRPMI with GS-­9688 or ≤0.1% DMSO vehicle control at 37°C. After 2 hours, cells were treated with 50% vol/vol BDGolgiPlug (BD Biosciences) diluted in 1 × PBS and incubated at 37°C for 6  hours. Cells were then harvested and stained for flow cytometric analysis. AMIN ET AL. AMIN ET AL. Gilead Sciences Inc.) with GS-­9688 or ≤0.1% DMSO vehicle control from 0 days. Cells were maintained in 20 IU/mL recombinant human (rh)-­IL-­2 (Peprotech, London, United Kingdom) and continually supple- mented throughout the expansion period. Cells were restimulated with HBV-­OLP for the final 16 hours in the presence of 1 µg/mL Brefeldin-­A (Sigma-­Aldrich) and Monensin (GolgiStop; BD Biosciences, San Jose, CA) at 37°C, before analysis by flow cytometry (described subsequently). Where appropriate, replicate wells were pooled before restimulation. Alternatively, HBV-­specific CD8+ T cells were expanded using 0.1  µg/mL ProMix HBV-­OLP, 15-­mer peptide pool of nine human leukocyte antigen (HLA)-­A2/ A11/A24-­restricted peptides (ProImmune, Oxford, United Kingdom), or 1 µM HBV-­derived HLA-­A2-­ restricted peptides (core FLPSDFFPSV; envelope FLLTRILTI, WLSLLVPFV, LLVPFVQWFV, and GLSPTVWLSV; polymerase GLSRYVARL and KLHLYSHPI [ProImmune]). HBV-­specific CD8+ T cells were detected using HLA-­specific multimers, pooled as appropriate for each patient HLA and mul- timer type. Briefly, after expansion, cells were resus- pended in multimer wash buffer (1  ×  PBS with 2% human AB serum; Life Technologies), containing a pool of HLA-­restricted multimers (Supporting Table S2). Cells were stained with multimers for 15 minutes, at 37°C, before monoclonal antibody (mAb) staining for flow cytometric analysis. were acquired on a LSRFortessaX20, and data ana- lyzed using FlowJo (v.10.4.1; BD Biosciences). Single stain controls and anti-­mouse immunoglobulin G (IgG) CompBeads (BD Biosciences) were used where appropriate. ASSESSMENT OF MAIT AND NK CELL PHENOTYPE AND FUNCTION A total of 0.5-­1  ×  106 PBMCs/well were seeded in 96-­well round-­bottom plates in cRPMI with GS-­ 9688 or ≤0.1% DMSO vehicle control at 37°C. After 18 hours, cells were resuspended in fresh cRPMI sup- plemented with 5 μg/mL Brefeldin-­A and 5 μg/mL BDGolgiStop and incubated for a further 5  hours. Cells were then harvested, stained with a panel of mAbs (Supporting Table S3), and analyzed by flow cytometry. For cytokine blocking, cells were treated with 10  µg/mL neutralizing antibodies against IL-­ 12p70 (clone:24910; R&D Systems, Inc., Minneapolis, MN), IL-­18 (clone 125-­2H; MBL USA Corp., Ottawa, IL), or isotype control IgG1 (clone 11711; R&D Systems, Inc.). MULTIPARAMETRIC FLOW CYTOMETRY For all flow cytometric analysis, cells were washed before staining in 1  ×  PBS. Cells were first stained with a fixable cell viability dye then stained with mAbs (Supporting Table S3) in brilliant violet buf- fer (BD Biosciences) for 30  minutes. Once stained, cells were washed and fixed with BDCytofix (BD Biosciences) for 20  minutes at 4°C. For intracel- lular antigens, cells were fixed and permeabilized using BDCytofix/Cytoperm and further stained with mAbs against intracellular antigens in 0.1% wt/vol Saponin (Sigma-­Aldrich). For intranuclear antigens, cells were fixed and permeabilized using the human forkhead box P3 (FOXP3) buffer (BD Biosciences), and further stained with mAbs targeting intranuclear antigens in 1 × PBS for 30 minutes at 4°C. Samples IN VITRO EXPANSION AND DETECTION OF HBV-­SPECIFIC T CELLS Approximately 0.5-­1  ×106 PBMCs/well were seeded in 96-­well round-­bottom plates in cRPMI for 7-­14 days, at 37°C. Cells were stimulated with 1 µg/mL pan-­genotypic overlapping 15-­mer peptides spanning the HBcAg overlapping peptide (OLP) (provided by 57 Hepatology,  July 2021 Hepatology,  July 2021 IN VITRO STIMULATION OF HUMAN PBMC FROM HEALTHY CONTROLS AND PATIENTS WITH CHB WITH GS-­9688 PRODUCES IMMUNOMODULATORY MEDIATORS A total of 0.5-­1 × 106 PBMCs/well were seeded in 96-­well round-­bottom plates in cRPMI and stimulated with GS-­9688 or ≤0.1% DMSO vehicle control at 37°C for 7 days. Cells were maintained in 500 IU/mL rhIL-­ 2, continually supplemented throughout. After 7 days, cells were harvested and analyzed by flow cytometry. To investigate the therapeutic potential of the TLR8 agonist GS-­9688, we first assessed its in vitro activity and potency using human PBMCs isolated from 10 healthy controls. PBMCs were stimulated with GS-­ 9688, and cell culture supernatants were evaluated by Luminex array (Fig. 1A). Among the cytokines tested, GS-­9688 induced the immunomodulatory cytokine IL-­12p40, in addition to the antiviral cytokines IL-­ 6, TNF-­α, and interferon-­g (IFN-­γ) (Fig. 1B and Supporting Fig. S1A). GS-­9688-­dependent cytokine induction occurred in a dose-­dependent manner, with a mean MEC and EC50 of 29/217 nM, 54/326 nM, and 55/267  nM for IL-­12p40, TNF-­α and IFN-­ γ, respectively (Fig. 1C and Supporting Fig. S1A). Additionally, GS-­9688 induced the production of the pro-­inflammatory cytokines IL-­1α, IL-­1β, and the anti-­inflammatory mediator IL-­1RA (Fig. 1B,C and Supporting Fig. S1A). Conversely, GS-­9688 induced little to no IFN-­α, a prototypical cytokine predomi- nantly produced following engagement of TLR7,(19,20) consistent with its selectivity for human TLR8(17) (Fig. 1B,C and Supporting Fig. S1A). Importantly, there was no significant difference in response in PBMCs from 10 age-­matched patients with CHB, with comparable MEC, EC50, and Emax for all cyto- kines tested (Fig. 1C and Supporting Fig. S1A). HepG2 LYSIS ASSAY NK cell cytolytic activity was assessed using a fluorescence-­based killing assay (DELFIA ETDA Cytotoxicity Assay; PerkinElmer, Waltham, MA). PBMCs were treated with GS-­9688 or ≤0.1% DMSO vehicle control at 37°C. After 16 hours, NK cells were isolated by negative selection (StemCell Technologies, Kent, WA). HepG2 cells (HCC cell 58 Hepatology,  Vol. 74,  No. 1,  2021 AMIN ET AL. AMIN ET AL. Pipeline Pilot v.9.2 (BIOVIA, San Diego, CA). All statistical analyses were performed in Prism (v.7.0e; GraphPad Software, San Diego, CA); tests used are indicated in figure legends (Wilcoxon signed-­rank t test; Kruskal-­Wallis test; Friedman test [ANOVA] with Dunn’s post hoc test; and ANOVA with Sidak’s post hoc test). All tests were carried out as two-­tailed tests. Significant differences are denoted in all figures and defined as *P < 0.05, **P < 0.01, ***P < 0.001, and ****P < 0.0001. line [HB-­8065]; ATCC, Manassas, VA) were loaded with the intracellular-­specific fluorescence-­enhancing ligand BATDA and incubated for 30 minutes. HepG2 were co-­cultured with pretreated, purified NK cells at a 1:10 target-­to-­effector ratio in V-­bottomed plates and incubated for a further 2 hours. Culture superna- tants were then harvested and extracellular release of BATDA was assessed by fluorescence activity using Europium solution, measured by a time-­resolved fluo- rometer (VICTOR, PerkinElmer). ASSESSMENT OF MDSC FREQUENCY, PHENOTYPE, AND FUNCTION A total of 1  ×  106 freshly isolated PBMCs were stained to determine ex vivo frequencies of MDSC subsets by flow cytometry. To determine the effect of GS-­9688 on MDSC frequencies in the short term, 1-­2 × 106 PBMCs/well were seeded in 48-­well plates in cRPMI and cultured for 24 hours with GS-­9688 or ≤0.1% DMSO vehicle control at 37°C. Following incubation, cells were harvested for analysis by flow cytometry. Culture supernatants were stored at −80° for analysis of extracellular arginase-­I by ELISA (Hycult Biotech, Uden, the Netherlands). STATISTICAL ANALYSIS The Emax defines the maximum cytokine level induced by GS-­9688. The minimal effective concen- tration (MEC) defines the concentration of GS-­9688 corresponding to three-­fold induction of cytokine above background (DMSO control). EC50 defines the concentration of GS-­9688 giving 50% of the maximal response. MEC and EC50 were calculated using the 59 Hepatology,  July 2021 AMIN ET AL. FIG. 1. In vitro stimulation with GS-­9688 induces secretion of immunomodulatory cytokines by cDCs and MNPs. (A) Experimental design: evaluation of GS-­9688-­induced soluble mediators by multiplex array. (B) Concentration of cytokines from PBMC culture supernatants of healthy controls stimulated for 24 hours with 0.156 µM GS-­9688 or vehicle control (DMSO). Bars represents mean SEM l d b l d f ll d l f d ff b A C D E B A B B A FIG. 1. In vitro stimulation with GS-­9688 induces secretion of immunomodulatory cytokines by cDCs and MNPs. (A) Experimental design: evaluation of GS-­9688-­induced soluble mediators by multiplex array. (B) Concentration of cytokines from PBMC culture supernatants of healthy controls stimulated for 24 hours with 0.156 µM GS-­9688 or vehicle control (DMSO). Bars represents mean ± SEM; circle radius represents absolute expression; and filled-­in circles represent a significant difference between treatment groups (n = 10; Mann-­Whitney U test). (C) Levels of IL-­12p40/IL-­18/IL-­6/TNF-­α/IFN-­γ/IFN-­α following GS-­9688 treatment, serial-­diluted from 10 µM, from PBMCs isolated from healthy controls (n = 10) and patients with CHB (n = 10). Data indicate the mean ± SEM. Representative flow cytometric plots (left) and percentage of IL-­12p40+ cells (D) and TNFα+ cells (E) by circulating MNPs (Lin1+CD14+), cDCs (Lin1−HLA-­DR+CD123−CD11c+), and pDCs (Lin1−HLA-­DR+CD123+CD11c−) from GS-­9688 treated healthy control PBMC (n = 6). Data represent the mean ± SEM. Abbreviations: GM-­CSF, granulocyte-­macrophage colony-­stimulating factor; SSC-­A, side scatter–­area. C D E C C C D D E E FIG. 1. In vitro stimulation with GS-­9688 induces secretion of immunomodulatory cytokines by cDCs and MNPs. (A) Experimental design: evaluation of GS-­9688-­induced soluble mediators by multiplex array. (B) Concentration of cytokines from PBMC culture supernatants of healthy controls stimulated for 24 hours with 0.156 µM GS-­9688 or vehicle control (DMSO). Bars represents mean ± SEM; circle radius represents absolute expression; and filled-­in circles represent a significant difference between treatment groups (n = 10; Mann-­Whitney U test). STATISTICAL ANALYSIS (C) Levels of IL-­12p40/IL-­18/IL-­6/TNF-­α/IFN-­γ/IFN-­α following GS-­9688 treatment, serial-­diluted from 10 µM, from PBMCs isolated from healthy controls (n = 10) and patients with CHB (n = 10). Data indicate the mean ± SEM. Representative flow cytometric plots (left) and percentage of IL-­12p40+ cells (D) and TNFα+ cells (E) by circulating MNPs (Lin1+CD14+), cDCs (Lin1−HLA-­DR+CD123−CD11c+), and pDCs (Lin1−HLA-­DR+CD123+CD11c−) from GS-­9688 treated healthy control PBMC (n = 6). Data represent the mean ± SEM. Abbreviations: GM-­CSF, granulocyte-­macrophage colony-­stimulating factor; SSC-­A, side scatter–­area. 60 Hepatology,  Vol. 74,  No. 1,  2021 AMIN ET AL. GS-­9688 ACTIVATES cDCs AND MONONUCLEAR PHAGOCYTES TO PRODUCE IL-­12p40 AND TNF-­α producing the antiviral cytokine IFN-­γ in response to HBcAg (Fig. 2A,B). A similar proportion of patients showed no increase in the number of IFN-­γ+ HBV-­ specific CD8+ T cells following stimulation with GS-­ 9688 (Fig. 2B). Interestingly, de novo IFN-­γ responses induced by GS-­9688 were detected in 3 patients who lacked a detectable HBV-­specific response to HBV-­core OLP stimulation alone. Similarly, when using a panel of HLA-­restricted peptide multimers (Supporting Table S2) to detect HBV-­specific CD8+ T cells after peptide expansion, the response to GS-­ 9688 was heterogenous. Here, 9 of 23 patients showed a substantial increase in the proportion of detectable HBV-­specific CD8+ T cells (Fig. 2C). Notably, the mean fluorescence intensity (MFI) of IFN-­γ from the HBV-­specific IFN-­γ+ CD8+ T-­cell pool showed a modest increase, suggesting a greater production of this antiviral cytokine per cell in response to HBV-­ core OLP in the presence of GS-­9688 (Fig. 2D). Furthermore, when assessing the frequency of poly- functional CD8+ T cells, we observed an increase in the proportion of CD8+ T cells producing both IFN-­γ and TNF-­α in 10 patients (36%; Fig. 2E). In contrast, the percentage of CD8+ T cells degranulat- ing in response to HBV-­core OLP only increased in 3 (16%) patients following treatment with GS-­9688 (Supporting Fig. S2B). Taken together, these data support the potential of GS-­9688 to enhance the noncytolytic effector function of pre-­existing endog- enous HBV-­specific CD8+ T cells, and to increase the frequency of antiviral T cells in a subset of patients. To investigate the cellular source of relevant immunomodulatory cytokines, we examined the effect of GS-­9688 on circulating myeloid cells. Human TLR8 is expressed primarily by cDCs and mononuclear phagocytes (MNPs), but is absent on plasmacytoid dendritic cells (pDCs).(14-­16) Short-­term stimulation of PBMCs with GS-­9688 increased production of IL-­12p40 by Lin1−HLA-­ DR+CD123−CD11c+ cDCs, in a dose-­dependent manner (Fig. 1D). Likewise, TNF-­α was produced by cDCs and Lin1+CD14+ MNPs in response to GS-­9688 (Fig. 1E). The cDCs, pDCs, and MNPs produced minimal IFN-­α when treated with GS-­ 9688, consistent with selective activation of TLR8 by GS-­9688 (Supporting Fig. S1B). The activation and induction of immunomodulatory cytokines was supported by augmented expression of the activation marker CD40 on both cDCs and MNPs (Supporting Fig. S1C). Collectively, these data demonstrate that GS-­9688 activates cDCs and MNPs and is a potent inducer of the immunomodulatory cytokines IL-­12 and TNF-­α in vitro. FREQUENCIES OF FUNCTIONAL HBV-­SPECIFIC CD8+ T CELLS INCREASE IN A SUBSET OF PATIENTS WITH CHB AFTER IN VITRO STIMULATION WITH GS-­9688 (C) Representative flow cytometric plots (left) and percentage of HBV-­specific CD8+ T cells identified by staining with a panel of immunodominant HBV-­specific HLA-­restricted multimers (see Supporting Table S2) after in vitro expansion with a pool of HBV-­derived HLA-­restricted peptides ± 0.156 µM GS-­9688 or DMSO (n = 23; Wilcoxon Signed-­rank t test). (D) MFI of IFN-­γ produced in response to HBV-­core OLP (n = 21). (E) Percentage of CD8+ T cells co-­producing IFN-­γ and TNF-­α in response to HBV-­core OLP (n = 28). (F) Stratification of patient non-­responders and responders (defined as a ≥1.2-­fold increase in percentage of IFN-­γ+ HBV-­specific CD8+ T cells in response to HBV-­core OLP in the presence of 0.1 µM GS-­9688) by baseline HBsAg titer (n = 23). Clinical characteristics of all patients with CHB are detailed in Supporting Table S1. Error bars represent the mean ± SEM. **P < 0.01. C E F D C D C D C C E F E F F FIG. 2. GS-­9688 increases HBV-­specific CD8+ T-­cell frequency and function in a subset of patients with CHB. HBV-­specific CD8+ T cells were expanded from PBMCs by stimulation with pan-­genotypic, overlapping peptides spanning the HBV-­core protein (OLP) in the presence of 0.1 µM GS-­9688 or vehicle control (DMSO). Representative flow cytometric plots of a “responder” and “non-­responder” to GS-­9688 treatment (A) and percentage of IFN-­γ-­producing HBV-­specific CD8+ T cells for individual patients (B). The percentage of IFN-­γ produced by DMSO-­treated CD8+ T cells was subtracted to determine HBV-­specific cytokine production (n = 28). Heat map denotes fold change in percentage of IFN-­γ production with GS-­9688. (C) Representative flow cytometric plots (left) and percentage of HBV-­specific CD8+ T cells identified by staining with a panel of immunodominant HBV-­specific HLA-­restricted multimers (see Supporting Table S2) after in vitro expansion with a pool of HBV-­derived HLA-­restricted peptides ± 0.156 µM GS-­9688 or DMSO (n = 23; Wilcoxon Signed-­rank t test). (D) MFI of IFN-­γ produced in response to HBV-­core OLP (n = 21). (E) Percentage of CD8+ T cells co-­producing IFN-­γ and TNF-­α in response to HBV-­core OLP (n = 28). (F) Stratification of patient non-­responders and responders (defined as a ≥1.2-­fold increase in percentage of IFN-­γ+ HBV-­specific CD8+ T cells in response to HBV-­core OLP in the presence of 0.1 µM GS-­9688) by baseline HBsAg titer (n = 23). Clinical characteristics of all patients with CHB are detailed in Supporting Table S1. FREQUENCIES OF FUNCTIONAL HBV-­SPECIFIC CD8+ T CELLS INCREASE IN A SUBSET OF PATIENTS WITH CHB AFTER IN VITRO STIMULATION WITH GS-­9688 Finally, we explored whether the heterogeneity in the magnitude of the HBV-­specific T-­cell response to GS-­9688 was associated with any clinical param- eters in our cohort. In doing so, we noted that a baseline HBsAg titer less than 2,000  IU/mL was associated with an increase in the proportion of IFN-­ γ-­producing HBV-­specific T cells in the presence of GS-­9688 (Fig. 2F). In contrast, most patients denoted “non-­responders” (who did not have an increase in the frequency of IFN-­γ+ HBV-­specific CD8+ T cells with GS-­9688) had a baseline HBsAg titer greater than 2,000 IU/mL (Fig. 2F). No clear association in responsiveness was seen with serum ALT levels or HBV viral load (Supporting Fig. S2C). CD8+ T cells are critical for the control of HBV infection, mediated in part through their capacity for noncytolytic inhibition of HBV replication by the secretion of antiviral cytokines.(21-­23) It is increasingly recognized that local cytokine environments can shape adaptive immune responses. Therefore, we tested the capacity of the cytokines induced by GS-­9688 to indirectly modulate the frequency of functional HBV-­ specific CD8+ T cells in response to HBV-­OLP using PBMCs isolated from patients with CHB (clinical parameters at the time of sampling in Supporting Table S1 and gating strategy in Supporting Fig. S2A). In 13 of 28 patients examined, treatment with GS-­9688 increased the frequency of CD8+ T cells 61 Hepatology,  July 2021 AMIN ET AL. A C E F D B Hepatology,  July 2021 AMIN ET AL. B A B A C E F D FIG. 2. GS-­9688 increases HBV-­specific CD8+ T-­cell frequency and function in a subset of patients with CHB. HBV-­specific CD8+ T cells were expanded from PBMCs by stimulation with pan-­genotypic, overlapping peptides spanning the HBV-­core protein (OLP) in the presence of 0.1 µM GS-­9688 or vehicle control (DMSO). Representative flow cytometric plots of a “responder” and “non-­responder” to GS-­9688 treatment (A) and percentage of IFN-­γ-­producing HBV-­specific CD8+ T cells for individual patients (B). The percentage of IFN-­γ produced by DMSO-­treated CD8+ T cells was subtracted to determine HBV-­specific cytokine production (n = 28). Heat map denotes fold change in percentage of IFN-­γ production with GS-­9688. TREATMENT OF PBMCs WITH GS-­9688 POTENTIATES THE ACTIVATION AND FUNCTION OF ANTIVIRAL EFFECTORS eliminate infected hepatocytes.(25) In line with this, GS-­9688 enhanced the cytolytic capacity of NK cells, as indicated by increased expression of perforin and granzyme B (Fig. 3C) and the propensity for degran- ulation, as denoted by CD107a mobilization (Fig. 3D). Moreover, GS-­9688-­treated, purified NK cells also increased lysis of the HepG2 hepatoma cell line (Fig. 3E). Collectively, these data demonstrate that GS-­9688 enhances both the noncytolytic and cyto- lytic effector functions of NK cells in vitro. Innate effector cells such as NK cells play a dual role in the setting of viral infection. Although these immune mediators can exert antiviral activity by direct or indirect effects (e.g., through modulation of T-­cell responses), emerging data underscore mechanisms by which they limit antiviral responses through the inhi- bition or killing of antigen-­specific T cells. In CHB, NK cells can also become defective in their capacity to produce IFN-­γ and TNF-­α, resulting in an inability to effectively exert noncytolytic activity in the HBV-­ infected liver.(24,25) Although a role for MAITs (non-­classical T cells characterized by expression of the invariant chain Vα7.2) in CHB remains unclear, they are highly enriched in the liver and are potent producers of IFN-­γ in response to TLR8 agonism.(28) GS-­9688 activated MAITs in PBMCs, increasing the expres- sion of IFN-­γ and granzyme B (Supporting Fig. S4A-­C). Analogous to NK cells, this increase in the noncytolytic and cytolytic potential of MAITs by GS-­ 9688 was IL-­12/IL-­18-­dependent in 2 healthy con- trols (Supporting Fig. S4B,C). To address the functional impact of GS-­9688 on NK cells in vitro, we determined the activation status of the global NK cell population in response to GS-­ 9688 treatment of PBMCs from healthy controls and patients with CHB. GS-­9688 activated NK cells in a dose-­dependent manner, increasing the expression of the activation markers CD69, HLA-­DR, and CD38 (gating strategy; Supporting Fig. S3A and Fig. 3A). Activation was evident on both the immature cyto- kine producing CD56bright population, which has been described to be preferentially enriched in the liver,(26) and the cytotoxic, more mature CD56dim subset (Supporting Fig. S3B,C). In line with their activation, treatment with GS-­9688 augmented the noncytolytic effector function of NK cells, confirmed by an increased production of TNF-­α and IFN-­γ (Fig. 3B). As expected, the increase in cytokine pro- duction driven by GS-­9688 was largely attributable to the CD56bright population (Supporting Fig. S3D). FREQUENCIES OF FUNCTIONAL HBV-­SPECIFIC CD8+ T CELLS INCREASE IN A SUBSET OF PATIENTS WITH CHB AFTER IN VITRO STIMULATION WITH GS-­9688 Error bars represent the mean ± SEM. **P < 0.01. 62 AMIN ET AL. AMIN ET AL. Hepatology,  Vol. 74,  No. 1,  2021 TREATMENT OF PBMCs WITH GS-­9688 POTENTIATES THE ACTIVATION AND FUNCTION OF ANTIVIRAL EFFECTORS NK cells do not express TLR8 but can be activated by TLR8 agonists through the production of IL-­12 and IL-­18.(27) Consistent with these data, neutraliza- tion of IL-­12/IL-­18 abrogated the IFN-­γ produc- tion seen in response to GS-­9688 treatment in the 6 individuals tested, at all concentrations of GS-­9688 (Fig. 3B). This finding supports a role for GS-­9688-­ induced cytokines in promoting NK-­cell antiviral function. In CHB, NK cells can also mediate negative reg- ulatory effects by up-­regulating death ligands such as TRAIL to kill HBV-­specific T cells selectively expressing TRAIL-­R2.(7,8) Furthermore, TRAIL-­ expressing NK cells have the potential to directly kill hepatocytes.(7) GS-­9688 treatment induced a signif- icant increase in TRAIL-­expressing NK cells (Fig. 3F), which was most evident on the CD56bright subset (Fig. 3F and Supporting Fig. S3E). Together, these data demonstrate that GS-­9688 can enhance the cytolytic and noncytolytic activity of multiple innate effectors in vitro. IN VITRO GS-­9688 REDUCES THE FREQUENCY OF TREG AND INCREASES THE FREQUENCY OF CIRCULATING FOLLICULAR HELPER CD4+ T CELLS PBMCs from healthy controls (HC) or patients with CHB were treated in vitro with GS-­9688 (dose range or single dose) or vehicle control (DMSO) for 24 hours. (A) Representative flow cytometric plots, percentages of CD69 and HLA-­ DR, and MFI of CD38 expression (CHB; all n = 20; Friedman test [ANOVA] with a Dunn’s multiple comparisons test). (B) Percentage of TNF-­α+ (0.156 µM; HC; n = 8) and IFN-­γ+ (0.156 µM; HC; n = 14; Wilcoxon signed-­rank t test) ± neutralization of IL-­12/IL-­18 or isotype control (0.156 µM; HC; n = 6; Wilcoxon signed-­rank t test). (C) Percentage of perforin+ (0.156 µM; HC; n = 14) and granzyme B (0.156 µM; HC; n = 8; Wilcoxon signed-­rank t test). (D) Percentage of CD107a+ (0.156 µM; HC; n = 22; Wilcoxon signed-­rank t test) on global CD3−CD56+ NK cells. (E) Schematic of experimental setup and percentage of cell lysis of HepG2 hepatoma cell line (target cell) following co-­culture with purified NK cells pretreated with DMSO or GS-­9688 (0.2 µM; HC; n = 6; Wilcoxon signed-­rank t test). (F) Representative flow cytometric plots (left) and percentage of TRAIL expression on global CD3−CD56+ NK cells and CD56bright NK cells (0.1 µM; CHB; n = 20; Wilcoxon signed-­rank t test). Error bars represent the mean ± SEM. **P < 0.01; ***P < 0.001; ****P < 0.0001. D E F E E D E D F F FIG. 3. In vitro stimulation with GS-­9688 increases the cytolytic and noncytolytic potential of NK cells, while increasing TRAIL expression on the CD56bright subset. PBMCs from healthy controls (HC) or patients with CHB were treated in vitro with GS-­9688 (dose range or single dose) or vehicle control (DMSO) for 24 hours. (A) Representative flow cytometric plots, percentages of CD69 and HLA-­ DR, and MFI of CD38 expression (CHB; all n = 20; Friedman test [ANOVA] with a Dunn’s multiple comparisons test). (B) Percentage of TNF-­α+ (0.156 µM; HC; n = 8) and IFN-­γ+ (0.156 µM; HC; n = 14; Wilcoxon signed-­rank t test) ± neutralization of IL-­12/IL-­18 or isotype control (0.156 µM; HC; n = 6; Wilcoxon signed-­rank t test). (C) Percentage of perforin+ (0.156 µM; HC; n = 14) and granzyme B (0.156 µM; HC; n = 8; Wilcoxon signed-­rank t test). (D) Percentage of CD107a+ (0.156 µM; HC; n = 22; Wilcoxon signed-­rank t test) on global CD3−CD56+ NK cells. IN VITRO GS-­9688 REDUCES THE FREQUENCY OF TREG AND INCREASES THE FREQUENCY OF CIRCULATING FOLLICULAR HELPER CD4+ T CELLS Follicular helper CD4+ T cells (TFH) play a key role in promoting adaptive immunity through the generation of long-­lived plasma cells.(29,30) In contrast, CD4+ TREG cells are potent immuno- suppressors able to down-­regulate adaptive immu- nity, with previous studies reporting increases in the proportion of circulating and liver-­resident TREG in patients, that actively inhibit the antiviral Although IFN-­γ production by NK cells can pro- mote antiviral T-­cell responses and inhibit viral rep- lication in hepatocytes, additional anti-­HBV activity of NK cells is attributable to their ability to directly 63 AMIN ET AL. Hepatology,  July 2021 FIG. 3. In vitro stimulation with GS-­9688 increases the cytolytic and noncytolytic potential of NK cells, while increasing TRAIL expression on the CD56bright subset. PBMCs from healthy controls (HC) or patients with CHB were treated in vitro with GS-­9688 (dose range or single dose) or vehicle control (DMSO) for 24 hours. (A) Representative flow cytometric plots, percentages of CD69 and HLA-­ DR, and MFI of CD38 expression (CHB; all n = 20; Friedman test [ANOVA] with a Dunn’s multiple comparisons test). (B) Percentage of TNF-­α+ (0.156 µM; HC; n = 8) and IFN-­γ+ (0.156 µM; HC; n = 14; Wilcoxon signed-­rank t test) ± neutralization of IL-­12/IL-­18 or isotype control (0.156 µM; HC; n = 6; Wilcoxon signed-­rank t test). (C) Percentage of perforin+ (0.156 µM; HC; n = 14) and granzyme B (0.156 µM; HC; n = 8; Wilcoxon signed-­rank t test). (D) Percentage of CD107a+ (0.156 µM; HC; n = 22; Wilcoxon signed-­rank t test) on global CD3−CD56+ NK cells. (E) Schematic of experimental setup and percentage of cell lysis of HepG2 hepatoma cell line (target cell) following co-­culture with purified NK cells pretreated with DMSO or GS-­9688 (0.2 µM; HC; n = 6; Wilcoxon signed-­rank t test). (F) Representative flow cytometric plots (left) and percentage of TRAIL expression on global CD3−CD56+ NK cells and CD56bright NK cells (0.1 µM; CHB; n = 20; Wilcoxon signed-­rank t test). Error bars represent the mean ± SEM. **P < 0.01; ***P < 0.001; ****P < 0.0001. A B D E C F A A B C B C C C B FIG. 3. In vitro stimulation with GS-­9688 increases the cytolytic and noncytolytic potential of NK cells, while increasing TRAIL expression on the CD56bright subset. IN VITRO GS-­9688 REDUCES THE FREQUENCY OF TREG AND INCREASES THE FREQUENCY OF CIRCULATING FOLLICULAR HELPER CD4+ T CELLS 5A and Supporting Fig. S6C). Although we noted a marked reduction in M-­MDSCs, this coin- cided with a relative increase in the proportion of immature myeloid cells with a PMN-­MDSC phe- notype (Supporting Fig. S6C), the absolute fre- quency of PMN-­MDSCs remained unchanged when evaluated as a percentage of total leukocytes (Fig. 5A). pp g g Although the overall proportion of CD4+ T cells remained unchanged (Supporting Fig. S5B), there was an increase in the frequency of cTFH in response to GS-­9688 at all doses tested (Fig. 4A). Furthermore, GS-­9688 altered the phenotype of cTFH by increasing the expression of inducible T-­cell co-­stimulator (ICOS), a marker for TFH differentia- tion and function(33) (Fig. 4B). Conversely, treatment with GS-­9688 induced a dose-­dependent decrease in the frequency of circulating TREG (Fig. 4C). Despite reducing the frequency of TREG, GS-­9688 had little impact on the immunosuppressive potential of the remaining TREG population on the basis of unal- tered expression of the negative regulator, cytotoxic T-­lymphocyte-­associated protein 4 (CTLA4; Fig. 4D) and CD39, the rate-­limiting enzyme in the generation of immunosuppressive adenosine (Fig. 4E). Although the potential for suppression by the remaining TREG population was unaffected by GS-­ 9688, the ability of GS-­9688 to decrease the fre- quency of TREG suggests that it may act to reduce the overall capacity of TREG to limit HBV-­specific T-­cell responses in vivo. GS-­9688 induced MDSC activation, as determined by increased expression of CD80 (Fig. 5B) and altered the immunosuppressive potential of both subsets in vitro. Short-­term GS-­9688 exposure decreased expres- sion of intracellular arginase-­I in PMN-­MDSCs, while simultaneously increasing its expression in M-­MDSCs, albeit to a much lower level than the PMN-­MDSCs (Fig. 5C). Expression of CD63, a measure of azuro- philic granule mobilization to the cell surface, remained unchanged on PMN-­MDSCs but dramat- ically increased on M-­MDSCs (Fig. 5D). These data are suggestive of active degranulation of MDSC in vitro triggered by GS-­9688, supported by an increased release of extracellular arginase-­I into the culture media (Fig. 5E). In addition, we observed an increase in expression of the negative regulators galectin-­9 (on IN VITRO GS-­9688 REDUCES THE FREQUENCY OF TREG AND INCREASES THE FREQUENCY OF CIRCULATING FOLLICULAR HELPER CD4+ T CELLS (E) Schematic of experimental setup and percentage of cell lysis of HepG2 hepatoma cell line (target cell) following co-­culture with purified NK cells pretreated with DMSO or GS-­9688 (0.2 µM; HC; n = 6; Wilcoxon signed-­rank t test). (F) Representative flow cytometric plots (left) and percentage of TRAIL expression on global CD3−CD56+ NK cells and CD56bright NK cells (0.1 µM; CHB; n = 20; Wilcoxon signed-­rank t test). Error bars represent the mean ± SEM. **P < 0.01; ***P < 0.001; ****P < 0.0001. 64 Hepatology,  Vol. 74,  No. 1,  2021 AMIN ET AL. response and contributes to chronicity in CHB.(31) Importantly, recent studies have highlighted the capacity of TLR8 agonists to both reduce the sup- pressive capacity of TREG in a model of antitumor immunity(15) and enhance TFH differentiation.(32) Thus, GS-­9688 was examined for its effect on the frequency and phenotype of circulating TFH (cTFH) and TREG cells by quantifying their proportions in PBMCs isolated from patients with CHB or healthy controls (TREG: CD4+CD25hiCD127loFOXP3+; cTFH: CD4+CXCR5+PD-­1+; gating strategy found in Supporting Fig. S5A) after in vitro culture. and monocytic MDSCs (M-­MDSCs).(34) Arginase-­I expressing PMN-­MDSCs accumulate in patients with CHB, where they limit the proliferation and function of bystander and HBV-­specific T cells.(9) Different TLR8 agonists were recently shown to reduce M-­MDSC frequencies in vitro by selectively inducing their apoptosis and limiting their immuno- suppressive activity.(35,36) Consequently, we assessed the capacity of GS-­9688 to modulate the frequency and functionality of MDSC. and monocytic MDSCs (M-­MDSCs).(34) Arginase-­I expressing PMN-­MDSCs accumulate in patients with CHB, where they limit the proliferation and function of bystander and HBV-­specific T cells.(9) Different TLR8 agonists were recently shown to reduce M-­MDSC frequencies in vitro by selectively inducing their apoptosis and limiting their immuno- suppressive activity.(35,36) Consequently, we assessed the capacity of GS-­9688 to modulate the frequency and functionality of MDSC. y First, we assessed the effect of GS-­9688 on the frequency of MDSC subsets in patients with CHB, defining PMN-­MDSCs as CD11b+CD33+HLA-­ DRloCD14−CD15+ and M-­MDSCs as CD11b+CD33+HLA-­DRloCD14+CD15− (gating strategy found in Supporting Fig. S6A). The ex vivo frequency of each MDSC subset was quantified as a percentage of the immature myeloid compartment (CD11bhiCD33+), revealing that M-­MDSCs are the predominant subset, accounting for approximately 45% of immature myeloid precursors (Supporting Fig. S6B). In line with previous reports with other TLR8 agonists, short-­term culture with GS-­9688 led to a reduction in the frequency of M-­MDSCs (Fig. GS-­9688 SIGNIFICANTLY DECREASES MONOCYTIC MDSC FREQUENCIES, WHILE TRIGGERING A RELEASE OF ARGINASE-­I FROM PMN-­MDSCs MDSCs are immature myeloid progenitors that exert potent immune regulation through the manipula- tion of nutrient availability and expression of inhibitory ligands like programmed death-­ligand 1 (PD-­L1).(34) The MDSC compartment consists of two popula- tions, polymorphonuclear MDSCs (PMN-­MDSCs) 65 AMIN ET AL. Hepatology,  July 2021 oth subsets of MDSCs) and PD-­L1 (on the remain- M MDSC ) h h ld bl l mucin domain containing-­3 (Tim-­3)-­expressing or d ll d h 1 (PD 1) IG. 4. GS-­9688 increases the frequency of cTFH and decreases the frequency of TREG. (A) Representative flow cytometric plots (left nd percentage of cTFH (CD4+CXCR5+PD-­1+; healthy controls (HC); n = 12) as a proportion of global CD3+CD8−CD4+ T cells afte days of in vitro stimulation with GS-­9688 (dose range). Representative flow cytometric plots and summary data depicting ICOS xpression (MFI; n = 12) (B) and percentage of CD4+ TREG (CD4+CD127loCD25hiFOXP3+; CHB/HC; n = 37) as a proportion of globa D3+CD8−CD4+ T cells after in vitro stimulation with GS-­9688 (dose range) (C). Representative flow cytometric plots and summary ata depicting CTLA-­4 (percentage and MFI; n = 8/14) (D) and CD39 (percentage and MFI; n = 8/14) (E). Data represent the mean ± EM. *P < 0.5. Freidman test (ANOVA) with a Dunn’s post hoc multiple comparisons test compared with DMSO control. Abbreviation TLA-­4, cytotoxic T-­lymphocyte-­associated protein 4. A D E B C C B C A B C A B D D D E E E FIG. 4. GS-­9688 increases the frequency of cTFH and decreases the frequency of TREG. (A) Representative flow cytometric plots (left) and percentage of cTFH (CD4+CXCR5+PD-­1+; healthy controls (HC); n = 12) as a proportion of global CD3+CD8−CD4+ T cells after 7 days of in vitro stimulation with GS-­9688 (dose range). Representative flow cytometric plots and summary data depicting ICOS expression (MFI; n = 12) (B) and percentage of CD4+ TREG (CD4+CD127loCD25hiFOXP3+; CHB/HC; n = 37) as a proportion of global CD3+CD8−CD4+ T cells after in vitro stimulation with GS-­9688 (dose range) (C). Representative flow cytometric plots and summary data depicting CTLA-­4 (percentage and MFI; n = 8/14) (D) and CD39 (percentage and MFI; n = 8/14) (E). Data represent the mean ± SEM. *P < 0.5. Freidman test (ANOVA) with a Dunn’s post hoc multiple comparisons test compared with DMSO control. Abbreviation: CTLA-­4, cytotoxic T-­lymphocyte-­associated protein 4. mucin domain containing-­3 (Tim-­3)-­expressing or programmed cell death protein 1 (PD-­1)-­expressing HBV-­specific T cells(6,37) (Fig. 5F,G). GS-­9688 SIGNIFICANTLY DECREASES MONOCYTIC MDSC FREQUENCIES, WHILE TRIGGERING A RELEASE OF ARGINASE-­I FROM PMN-­MDSCs both subsets of MDSCs) and PD-­L1 (on the remain- ing M-­MDSCs), which could conceivably result in enhanced suppression of T-­cell immunoglobulin and both subsets of MDSCs) and PD-­L1 (on the remain- ing M-­MDSCs), which could conceivably result in enhanced suppression of T-­cell immunoglobulin and 66 Hepatology,  Vol. 74,  No. 1,  2021 AMIN ET AL. Discussion of dosing with GS-­9688 is well tolerated and able to (18) FIG. 5. GS-­9688 skews the balance of MDSC subsets and alters their immunosuppressive potential in patients with CHB. PBMCs isolated from patients with CHB were stimulated with a single dose of 0.1 µM GS-­9688 or vehicle control (DMSO) for 18 hours. (A) Percentage of PMN-­MDSCs (CD11b+CD33+HLA-­DRloCD14−CD15+) and M-­MDSCs (CD11b+CD33+HLA-­DRloCD14+CD15−) as a percentage of total live leukocytes (n = 26; Wilcoxon signed-­rank t test). PMN-­MDSC and M-­MDSC expression of CD80 (MFI; n = 11) (B), intracellular arginase-­I (C), and CD63 (MFI; n = 10) (D) (all Wilcoxon signed-­rank t tests). (E) Extracellular arginase-­I concentration released into cell culture supernatant measured by ELISA (n = 11). PMN-­MDSC and M-­MDSC expression of galectin-­9 (MFI; n = 10) (F) and PD-­L1 (MFI; n = 10) (G) (both Wilcoxon signed-­rank t tests). Error bars represent the mean ± SEM. **P < 0.01; ***P < 0.001; ****P < 0.0001. A B C D E F G Hepatology,  Vol. 74,  No. 1,  2021 AMIN ET AL. AMIN ET AL. A B A B B A B E D E D E E D C C D F G G G F F FIG. 5. GS-­9688 skews the balance of MDSC subsets and alters their immunosuppressive potential in patients with CHB. PBMCs isolated from patients with CHB were stimulated with a single dose of 0.1 µM GS-­9688 or vehicle control (DMSO) for 18 hours. (A) Percentage of PMN-­MDSCs (CD11b+CD33+HLA-­DRloCD14−CD15+) and M-­MDSCs (CD11b+CD33+HLA-­DRloCD14+CD15−) as a percentage of total live leukocytes (n = 26; Wilcoxon signed-­rank t test). PMN-­MDSC and M-­MDSC expression of CD80 (MFI; n = 11) (B), intracellular arginase-­I (C), and CD63 (MFI; n = 10) (D) (all Wilcoxon signed-­rank t tests). (E) Extracellular arginase-­I concentration released into cell culture supernatant measured by ELISA (n = 11). PMN-­MDSC and M-­MDSC expression of galectin-­9 (MFI; n = 10) (F) and PD-­L1 (MFI; n = 10) (G) (both Wilcoxon signed-­rank t tests). Error bars represent the mean ± SEM. **P < 0.01; ***P < 0.001; ****P < 0.0001. GS-­9688 SIGNIFICANTLY DECREASES MONOCYTIC MDSC FREQUENCIES, WHILE TRIGGERING A RELEASE OF ARGINASE-­I FROM PMN-­MDSCs of dosing with GS-­9688 is well tolerated and able to induce a sustained antiviral response.(18) Here we eval- uated the immunomodulatory effect of GS-­9688 on various immune cells in vitro using human PBMCs to understand its therapeutic potential for CHB. AMIN ET AL. Initial experiments confirmed GS-­9688 selectivity for TLR8, revealing the potent induction of immu- nomodulatory cytokines, such as IL-­12, by cDCs and MNPs, which was preserved in PBMCs from patients with CHB. In interrogating the effects on correlates of immune protection, we showed that GS-­9688 enhanced the frequency of HBV-­specific CD8+ T cells in a subset of patients. In vitro treatment with GS-­9688 boosted the production of antiviral cyto- kines, but not cytotoxicity, of HBV-­specific CD8+ T cells. The potential for GS-­9688 to enhance cel- lular mediators with antiviral potential in CHB was further evidenced by increased activation, improved cytolytic and noncytolytic effector function of NK cells, and MAITs. In the HBV-­infected liver, where NK cells are greatly enriched and where the virus-­ specific T-­cell response is limited, it is possible that GS-­9688-­activated NK cells could perform a signifi- cant antiviral role through secretion of cytokines, and enhanced killing of infected hepatocytes. In line with other TLR8 agonists, we confirmed that the increase in antiviral activity by these effectors was driven by induction of IL-­12/IL-­18. IL-­12 has the potential to reverse mitochondrial defects of exhausted HBV-­ specific CD8+ T cells, allowing for more efficient bio- energetics and enhanced antiviral functionality.(38-­40) Importantly, the therapeutic benefit of IL-­12 has been demonstrated in HBV transgenic mice, the wood- chuck model of CHB, and in early clinical trials in patients with CHB.(41-­44) show increased expression of the death ligand TRAIL on NK cells, particularly on the CD56bright subset driven by GS-­9688, which may further eliminate the already depleted pool of HBV-­specific T cells within the infected liver.(8) Conversely, these TRAIL+NK cells may act as antifibrotic mediators in CHB, killing activated hepatic stellate cells in a TRAIL-­dependent manner or by producing hepatoprotective cytokines.(46) y p g p p y A notable finding of this study was GS-­9688 mod- ulation of immunosuppressive cells. GS-­9688 reduced the frequency of TREG, potent immunosuppressors implicated in CHB.(31) Intriguingly, the decline in TREG numbers was associated with a corresponding expansion and activation of cTFH. The observed GS-­ 9688-­driven increase in ICOS expression on cTFH is significant, as ICOS is critical for IL-­21 produc- tion and the subsequent delivery of improved T-­cell help.(47,48) Although not studied here, we hypothesize that such an increase in cTFH and TFH-­associated cytokines will improve immune control in CHB by modulating the frequency of memory B cells and the production of affinity-­matured class-­switched anti- bodies. Discussion GS-­9688 is a potent TLR8 agonist in development for the treatment of CHB. A recent study in the wood- chuck model of CHB revealed that a short, finite period 67 Hepatology,  July 2021 REFERENCES 1) World Health Organization, Global Hepatitis Programme. Global hepatitis report. 2017. http://apps.who.int/iris/bitst​ream/10665/​ 25501​6/1/97892​41565​455-­eng.pdf?ua=1. Accessed May 21, 2020. 1) World Health Organization, Global Hepatitis Programme. Global hepatitis report. 2017. http://apps.who.int/iris/bitst​ream/10665/​ 25501​6/1/97892​41565​455-­eng.pdf?ua=1. Accessed May 21, 2020. 2) Cooke GS, Andrieux-­Meyer I, Applegate TL, Atun R, Burry JR, Cheinquer H, et al. Accelerating the elimination of viral hepatitis: a Lancet Gastroenterology & Hepatology Commission. Lancet Gastroenterol Hepatol 2019;4:135-­184. p Although the therapeutic efficacy of GS-­9688 in combination with nucleos(t)ide treatment remains to be fully evaluated in patients with CHB, it was shown to be safe and generally well-­tolerated in a phase 2 placebo-­controlled study in virally suppressed patients, with a subset achieving HBsAg and/or HBeAg loss.(55) While phase 2 studies are ongoing (ClinicalTrials.gov NCT03491553/NCT03615066), our work provides important insights into the immu- nomodulatory effects of GS-­9688 and has important implications for the rational design of combination studies with other immunomodulatory agents. Our data also raise the possibility that in vitro profiling of PBMC responses to GS-­9688 in patients with CHB may have utility for predicting therapeutic efficacy in patients. p 3) Levrero M, Testoni B, Zoulim F. HBV cure: why, how, when? Curr Opin Virol 2016;18:135-­143. 4) Bertoletti A, Ferrari C. Adaptive immunity in HBV infection. J Hepatol 2016;64:S71-­S83. J p 5) Maini MK, Pallett LJ. Defective T-­cell immunity in hepatitis B virus infection: why therapeutic vaccination needs a helping hand. Lancet Gastroenterol Hepatol 2018;3:192-­202. 6) Boni C, Fisicaro P, Valdatta C, Amadei B, Di Vincenzo P, Giuberti T, et al. Characterization of hepatitis B virus (HBV)-­ specific T-­cell dysfunction in chronic HBV infection. J Virol 2007;81:4215-­4225. 7) Dunn C, Brunetto M, Reynolds G, Christophides T, Kennedy PT, Lampertico P, et al. Cytokines induced during chronic hepatitis B virus infection promote a pathway for NK cell–­mediated liver damage. J Exp Med 2007;204:667-­680. g p 8) Peppa D, Gill US, Reynolds G, Easom NJW, Pallett LJ, Schurich A, et al. Up-­regulation of a death receptor renders antiviral T-­cells sus- ceptible to NK cell-­mediated deletion. J Exp Med 2013;210:99-­114. p p 9) Pallett LJ, Gill US, Quaglia A, Sinclair LV, Jover-­Cobos M, Schurich A, et al. Metabolic regulation of hepatitis B immu- nopathology by myeloid-­derived suppressor cells. Nat Med 2015;21:591-­600. AMIN ET AL. and M.K.M. obtained the clinical samples. O.E.A. and L.J.P. drafted the manuscript. All authors provided critical review of the manuscript. C.F., H.J., and S.D. contributed to the data analysis. W.M.C.R. and M.K.M. obtained the clinical samples. O.E.A. and L.J.P. drafted the manuscript. All authors provided critical review of the manuscript. intestinal absorption is expected to induce TLR8 acti- vation in the gut and liver, where the immune com- position is markedly different.(26,52–­54) It is likely that the secretion of immune mediators from the gut into the portal vein will in turn stimulate cells in the liver. Given the fact that the liver harbors a population of transcriptionally distant liver-­resident NK cells(26) and memory CD8+ T cells(53,54) future studies will need to focus on characterizing the intrahepatic immune response to GS-­9688. intestinal absorption is expected to induce TLR8 acti- vation in the gut and liver, where the immune com- position is markedly different.(26,52–­54) It is likely that REFERENCES Acknowledgment: The authors thank all patients who participated in this study as well as clinical colleagues at the Royal London Hospital (Mortimer Market Center), Royal Free Hospital, and the National Institute for Medical Research University College London Hospital Biomedical Research Center (London, United Kingdom), who helped with par- ticipant recruitment, sample acquisition, and provi- sion of clinical information. In particular, we thank Colette Sitali, clinical research nurse at the Royal Free Hospital, for her help with the sample provision. We also acknowledge the support staff at the Division of Infection and Immunity, University College London Flow Cytometry Core Facility, and the National Institutes of Health Tetramer Core Facility at Emory University (Atlanta, Georgia). 10) Menne S, Tumas DB, Liu KH, Thampi L, AlDeghaither D, Baldwin BH, et al. Sustained efficacy and seroconversion with the toll-­like receptor 7 agonist GS-­9620 in the woodchuck model of chronic hepatitis B. J Hepatol 2015;62:1237-­1245. p p 11) Lanford RE, Guerra B, Chavez D, Giavedoni L, Hodara VL, Brasky KM, et al. GS-­9620, an oral agonist of toll-­like receptor-­7, induces prolonged suppression of hepatitis B virus in chronically infected chimpanzees. Gastroenterology 2013;144:1508-­1517.e10. 12) Janssen HLA, Brunetto MR, Kim YJ, Ferrari C, Massetto B, Nguyen A-­H, et al. Safety, efficacy and pharmacodynamics of ve- satolimod (GS-­9620) in virally suppressed patients with chronic hepatitis B. J Hepatol 2018;68:431-­440. p p 13) Agarwal K, Ahn SH, Elkhashab M, Lau AH, Gaggar A, Bulusu A, et al. Safety and efficacy of vesatolimod (GS-­9620) in patients with chronic hepatitis B who are not currently on antiviral treat- ment. J Viral Hepat 2018;25:1331-­1340. p 14) Gorden KB, Gorski KS, Gibson SJ, Kedl RM, Kieper WC, Qiu X, et al. Synthetic TLR agonists reveal functional differences be- tween human TLR7 and TLR8. J Immunol 2005;174:1259-­1268. 15) Peng G, Guo Z, Kiniwa Y, Voo KS, Peng W, Fu T, et al. Toll-­like receptor 8-­mediated reversal of CD4+ regulatory T-­cell function. Science 2005;309:1380-­1384. Author Contributions: L.J.P., S.D., S.P.F., and M.K.M. contributed to the study concept. O.E.A., E.J.C., L.J.P., L.P., C.F., S.D., S.P.F., and M.K.M. contributed to the experimental designs. E.J.C., J.D., S.K., D.R., D.P., R.C., H.J., H.M.S., S.L., A.P., C.F., and S.D. contrib- uted to the data generation. O.E.A., E.J.C., L.J.P., L.P., Author Contributions: L.J.P., S.D., S.P.F., and M.K.M. contributed to the study concept. O.E.A., E.J.C., L.J.P., L.P., C.F., S.D., S.P.F., and M.K.M. contributed to the experimental designs. AMIN ET AL. Whether this decrease in TREG and expansion and activation of cTFH is sufficient to overcome the observed B-­cell dysfunction characteristic of patients with CHB will require further study.(49,50) Various other mechanisms have been identified that play a role in immune dysfunction in CHB, including the increased activity of MDSCs. Consistent with the literature,(35,36) we demonstrate the capacity of GS-­ 9688 to decrease the frequency of M-­MDSCs in vitro. However, this decrease was linked to an initial burst of arginase-­I release from PMN-­MDSCs, which may transiently limit the availability of the conditionally essential amino acid L-­arginine, acting as a crucial T-­cell rheostat.(9) Of further significance is the capac- ity of GS-­9688 to induce expression of PD-­L1 and galectin-­9 on the remaining MDSCs, which could limit HBV-­specific CD8+ T cells expressing high lev- els of PD-­1 and Tim-­3.(6,37) Intrahepatic PD-­L1 and galectin-­9 levels are increased in viral hepatitis, and our data suggest that they may be further enhanced by TLR8-­induced IFN-­γ.(37,51) Collectively, these data raise the possibility that combination with checkpoint blockade may improve the antiviral response to GS-­ 9688 treatment. p Although promising, it is important to note that GS-­9688 did not induce an effective HBV-­specific CD8+ T-­cell response in PBMCs from all patients, which is typical of many immunotherapeutic strate- gies in development for CHB using diverse patient cohorts.(6,37,45) This is reminiscent of the antiviral response to GS-­9688 in the woodchuck model of CHB, in which only half the animals treated with 3 mg/kg GS-­9688 had a sustained reduction in viral parameters.(18) Consistent with the woodchuck study, the response of patient HBV-­specific CD8+ T cells in vitro was not associated with age, sex, extent of liver inflammation, or viral load. However, the mag- nitude of the in vitro response was associated with a low-­baseline HBsAg titer (<2,000  IU/mL). To elu- cidate the potential differences in responders and non-­responders, it is important to consider the contri- bution of potent immunoregulatory leukocytes impli- cated in suppressing T-­cell immunity. In this study we GS-­9688 has good absorption and high first-­pass hepatic clearance, to limit systemic immune acti- vation.(17) After oral administration of GS-­9688, 68 Hepatology,  Vol. 74,  No. 1,  2021 AMIN ET AL. C.F., H.J., and S.D. contributed to the data analysis. W.M.C.R. and M.K.M. obtained the clinical samples. O.E.A. and L.J.P. drafted the manuscript. All authors provided critical review of the manuscript. C.F., H.J., and S.D. contributed to the data analysis. W.M.C.R. Hepatology,  July 2021 AMIN ET AL. 17) Mackman RL, Mish M, Chin G, Perry JK, Appleby T, Aktoudianakis V, et al. Discovery of GS-­9688 (Selgantolimod), as a potent and selective oral toll-­like receptor 8 agonist for the treat- ment of chronic hepatitis B. J Med Chem 2020;63:10188-­10203. 34) Kumar V, Patel S, Tcyganov E, Gabrilovich DI. The nature of myeloid-­derived suppressor cells in the tumor microenvironment. Trends Immunol 2016;37:208-­220. 35) Dang Y, Rutnam ZJ, Dietsch G, Lu H, Yang Y, Hershberg R, et  al. TLR8 ligation induces apoptosis of monocytic myeloid-­ derived suppressor cells. J Leukoc Biol 2018;103:157-­164. nt of chronic hepatitis B. J Med Chem 2020;63:10188-­10203 18) Daffis S, Balsitis S, Chamberlain J, Zheng J, Santos R, Rowe W, et al. Toll-­like receptor 8 agonist GS-­9688 induces sustained effi- cacy in the woodchuck model of chronic hepatitis B. Hepatology 2021;73:53-67. 36) Shayan G, Kansy BA, Gibson SP, Srivastava RM, Bryan JK, Bauman JE, et al. Phase Ib study of immune biomarker modula- tion with neoadjuvant cetuximab and TLR8 stimulation in head and neck cancer to overcome suppressive myeloid signals. Clin Cancer Res 2018;24:62-­72. 19) Niu C, Li LI, Daffis S, Lucifora J, Bonnin M, Maadadi S, et al. Toll-­like receptor 7 agonist GS-­9620 induces prolonged inhi- bition of HBV via a type I interferon-­dependent mechanism. J Hepatol 2018;68:922-­931. 37) Nebbia G, Peppa D, Schurich A, Khanna P, Singh HD, Cheng Y, et al. Upregulation of the Tim-­3/galectin-­9 pathway of T-­ cell exhaustion in chronic hepatitis B virus infection. PLoS One 2012;7:e47648. 20) Li LI, Barry V, Daffis S, Niu C, Huntzicker E, French DM, et al. Anti-­HBV response to toll-­like receptor 7 agonist GS-­9620 is associated with intrahepatic aggregates of T-­cells and B cells. J Hepatol 2018;68:912-­921. 38) Schurich A, Pallett LJ, Jajbhay D, Wijngaarden J, Otano I, Gill US, et al. Distinct metabolic requirements of exhausted and func- tional virus-­specific CD8+T-­cells in the same host. Cell Rep 2016;16:1243-­1252. 21) Maini MK, Boni C, Lee CK, Larrubia JR, Reignat S, Ogg GS, et al. The role of virus-­specific CD8+T-­cells in liver damage and viral control during persistent hepatitis B virus infection. J Exp Med 2000;191:1269-­1280. 39) Schurich A, Pallett LJ, Lubowiecki M, Singh HD, Gill US, Kennedy PT, et al. The third signal cytokine IL-­12 rescues the antiviral function of exhausted HBV-­specific CD8+T-­cells. PLoS Pathog 2013;9:e1003208. 22) Thimme R, Wieland S, Steiger C, Ghrayeb J, Reimann KA, Purcell RH, et al. Hepatology,  July 2021 CD8(+) T cells mediate viral clearance and dis- ease pathogenesis during acute hepatitis B virus infection. J Virol 2003;77:68-­76. 40) Fisicaro P, Barili V, Montanini B, Acerbi G, Ferracin M, Guerrieri F, et al. Targeting mitochondrial dysfunction can restore antiviral activity of exhausted HBV-­specific CD8 T cells in chronic hepati- tis B. Nat Med 2017;23:327-­336. 23) Guidotti LG, Ando K, Hobbs MV, Ishikawa T, Runkel L, Schreiber RD, et al. Cytotoxic T lymphocytes inhibit hepatitis B virus gene expression by a noncytolytic mechanism in transgenic mice. PNAS 1994;91:3764-­3768. 41) Carreño V, Zeuzem S, Hopf U, Marcellin P, Cooksley WE, Fevery J, et al. A phase I/II study of recombinant human interleukin-­12 in patients with chronic hepatitis B. J Hepatol 2000;32:317-­324. 24) Oliviero B, Varchetta S, Paudice E, Michelone G, Zaramella M, Mavilio D, et al. Natural killer cell functional dichotomy in chronic hepatitis B and chronic hepatitis C virus infections. Gastroenterology 2009;137:1151-­1160.e7. 42) Cavanaugh VJ, Guidotti LG, Chisari FV. Interleukin-­12 in- hibits hepatitis B virus replication in transgenic mice. J Virol 1997;71:3236-­3243. 25) Maini MK, Peppa D. NK cells: a double-­edged sword in chronic hepatitis B virus infection. Front Immunol 2013;4:57. 43) Rodriguez-­Madoz JR, Liu KH, Quetglas JI, Ruiz-­Guillen M, Otano I, Crettaz J, et al. Semliki forest virus expressing interleu- kin-­12 induces antiviral and antitumoral responses in woodchucks with chronic viral hepatitis and hepatocellular carcinoma. J Virol 2009;83:12266-­12278. 26) Stegmann KA, Robertson F, Hansi N, Gill U, Pallant C, Christophides T, et al. CXCR6 marks a novel subset of T-­ betloEomeshi natural killer cells residing in human liver. Sci Rep 2016;6:26157. 27) Gorski KS, Waller EL, Bjornton-­Severson J, Hanten JA, Riter CL, Kieper WC, et al. Distinct indirect pathways govern human NK-­cell activation by TLR-­7 and TLR-­8 agonists. Int Immunol 2006;18:1115-­1126. 44) Rigopoulou EI, Suri D, Chokshi S, Mullerova I, Rice S, Tedder RS, et al. Lamivudine plus interleukin-­12 combination ther- apy in chronic hepatitis B: antiviral and immunological activity. Hepatology 2005;42:1028-­1036. 28) Jo J, Tan AT, Ussher JE, Sandalova E, Tang X-­Z, Tan-­Garcia A, et al. Toll-­like receptor 8 agonist and bacteria trigger potent activation of innate immune cells in human liver. PLoS Pathog 2014;10:e1004210. 45) Schurich A, Khanna P, Lopes AR, Han KJ, Peppa D, Micco L, et al. Role of the coinhibitory receptor cytotoxic T lymphocyte an- tigen-­4 on apoptosis-­prone CD8+T-­cells in persistent hepatitis B virus infection. Hepatology 2011;53:1494-­1503. REFERENCES E.J.C., J.D., S.K., D.R., D.P., R.C., H.J., H.M.S., S.L., A.P., C.F., and S.D. contrib- uted to the data generation. O.E.A., E.J.C., L.J.P., L.P., 16) Poulin LF, Salio M, Griessinger E, Anjos-­Afonso F, Craciun L, Chen J-­L, et al. Characterization of human DNGR-­1+ BDCA3+ leukocytes as putative equivalents of mouse CD8α+ dendritic cells. J Exp Med 2010;207:1261-­1271. 69 Hepatology,  July 2021 Hepatology,  July 2021 29) Publicover J, Gaggar A, Jespersen JM, Halac U, Johnson AJ, Goodsell A, et al. An OX40/OX40L interaction directs successful immunity to hepatitis B virus. Sci Transl Med 2018;10:eaah5766. 46) Singh HD, Otano I, Rombouts K, Singh KP, Peppa D, Gill US, et al. TRAIL regulatory receptors constrain human hepatic stel- late cell apoptosis. Sci Rep 2017;7:5514. 47) Schmitt N, Morita R, Bourdery L, Bentebibel SE, Zurawski SM, Banchereau J, et al. Human dendritic cells induce the differenti- ation of interleukin-­21-­producing T follicular helper-­like cells through interleukin-­12. Immunity 2009;31:158-­169. 30) Wang X, Dong Q, Li Q, Li Y, Zhao D, Sun J, et al. Dysregulated response of follicular helper T-­cells to hepatitis B surface antigen promotes HBV persistence in mice and associates with outcomes of patients. Gastroenterology 2018;154:2222-­2236. 31) Manigold T, Racanelli V. T-­cell regulation by CD4 regulatory T-­ cells during hepatitis B and C virus infections: facts and contro- versies. Lancet Infect Diseases 2007;7:804-­813. 48) Morita R, Schmitt N, Bentebibel S-­E, Ranganathan R, Bourdery L, Zurawski G, et al. Human blood CXCR5+CD4+T-­cells are coun- terparts of T follicular cells and contain specific subsets that differ- entially support antibody secretion. Immunity 2011;34:108-­121. 32) Ugolini M, Gerhard J, Burkert S, Jensen KJ, Georg P, Ebner F, et al. Recognition of microbial viability via TLR8 drives TFH cell differentiation and vaccine responses. Nat Immunol 2018;19:386-­396. 49) Burton AR, Pallett LJ, McCoy LE, Suveizdyte K, Amin OE, Swadling L, et al. Circulating and intrahepatic antiviral B cells are defective in hepatitis B. J Clin Invest 2018;128:4588-­4603. 33) Choi Y, Kageyama R, Eto D, Escobar T, Johnston R, Monticelli L, et al. ICOS receptor instructs T follicular helper cell versus ef- fector cell differentiation via induction of the transcriptional re- pressor Bcl6. Immunity 2011;34:932-­946. 50) Salimzadeh L, Le Bert N, Dutertre C-­A, Gill US, Newell EW, Frey C, et al. PD-­1 blockade partially recovers dysfunctional virus–­specific B cells in chronic hepatitis B infection. J Clin Invest 2018;128:4573-­4587. 70 Hepatology,  Vol. 74,  No. 1,  2021 AMIN ET AL. virally suppressed adult patients with chronic hepatitis B: a phase 2, randomized, double-­blind, placebo-­controlled, multicenter study. In: Proceedings of the AASLD Liver Meeting, Boston, MA, 2019. 51) Kassel R, Cruise MW, Iezzoni JC, Taylor NA, Pruett TL, Hahn YS. Chronically inflamed livers up-­regulate expression of inhibi- tory B7 family members. Hepatology 2009;50:1625-­1637. y y 52) Mowat AM, Agace WW. Regional specialization within the in- testinal immune system. Hepatology,  July 2021 Nat Rev Immunol 2014;14:667-­685. Author names in bold designate shared co-­first authorship. 53) Pallett LJ, Davies J, Colbeck EJ, Robertson F, Hansi N, Easom NJW, et al. IL-­2high tissue-­resident T-­cells in the human liver: sen- tinels for hepatotropic infection. J Exp Med 2017;214:1567-­1580. 54) Gill US, Pallett LJ, Thomas N, Burton AR, Patel AA, Yona S, et al. Fine needle aspirates comprehensively sample intrahepatic immunity. Gut 2019;68:1493-­1503. Supporting Information Additional Supporting Information may be found at onlinelibrary.wiley.com/doi/10.1002/hep.31695/suppinfo. 55) Gane E, Zhao Y, Tan SK, Lau AH, Gaggar A, Subramanian M, et al. Efficacy and safety of oral TLR8 agonist selgantolimod in 71
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BDNF signaling during the lifetime of dendritic spines
Cell & tissue research/Cell and tissue research
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Abstract Dendritic spines are tiny membrane specialization forming the postsynaptic part of most excitatory synapses. They have been suggested to play a crucial role in regulating synaptic transmission during development and in adult learning processes. Changes in their number, size, and shape are correlated with processes of structural synaptic plasticity and learning and memory and also with neurodegenerative diseases, when spines are lost. Thus, their alterations can correlate with neuronal homeostasis, but also with dysfunction in several neurological disorders characterized by cognitive impairment. Therefore, it is important to understand how different stages in the life of a dendritic spine, including formation, maturation, and plasticity, are strictly regulated. In this context, brain-derived neurotrophic factor (BDNF), belonging to the NGF-neurotrophin family, is among the most intensively investigated molecule. This review would like to report the current knowledge regarding the role of BDNF in regulating dendritic spine number, structure, and plasticity concentrating especially on its signaling via its two often functionally antagonistic receptors, TrkB and p75NTR. In addition, we point out a series of open points in which, while the role of BDNF signaling is extremely likely conclusive, evidence is still missing. Keywords Brain-derived neurotrophic factor . Dendritic spines . Neurotrophin . TrkB . p75NTR Dendritic spines come in diverse sizes and morphologies especially regarding head volume, spine neck lengths, and thickness and are commonly classified, according to these criteria in three groups, i.e., stubby, thin, and mushroom spines (Peters and Kaiserman-Abramof 1969), possibly reflecting different functions. The size of the spine head scales with the size of the postsynaptic density, the number of neu- rotransmitter receptors, and synaptic strength. Moreover, the observation that dendritic spines are extremely dynamic both in size and shape of pre-existing spines and also in their new formation and disappearance links them to processes of activity-dependent synaptic plasticity (Sala and Segal 2014). Indeed, several studies showed activity-dependent changes in dendritic spine morphology and number occurring after induc- tion of synaptic plasticity, i.e., long-term potentiation (LTP) and long-term depression (LTD). Our current knowledge about dendritic spines indicates their crucial role in synaptic transmission and plasticity linking their morpho-physiology with cognition processes such as acquisition of new informa- tion and its long-term retention (Holtmaat and Caroni 2016). Accordingly, spine dysfunction is related to cognitive decline in aging (von Bohlen und Halbach et al. Abstract 2006) as well as to several neuropsychiatric, neurodevelopmental, and neurode- generative diseases including autisms (Sudhof 2008), mental retardation (Purpura 1974), and Alzheimer’s disease https://doi.org/10.1007/s00441-020-03226-5 Cell and Tissue Research (2020) 382:185–199 https://doi.org/10.1007/s00441-020-03226-5 Cell and Tissue Research (2020) 382:185–199 REVIEW Marta Zagrebelsky1,2 & Charlotte Tacke1 & Martin Korte1,2 Received: 28 February 2020 /Accepted: 27 April 2020 # The Author(s) 2020 / Published online: 14 June 2020 BDNF signaling during the lifetime of dendritic spines Marta Zagrebelsky1,2 & Charlotte Tacke1 & Martin Korte1,2 * Marta Zagrebelsky m.zagrebelsky@tu-bs.de 1 Division of Cellular Neurobiology, Zoological Institute, TU Braunschweig, Spielmannstr 7, 38106 Braunschweig, Germany 2 Helmholtz Centre for Infection Research, AG NIND, Inhoffenstr. 7, D-38124 Braunschweig, Germany Introduction Here it should be pointed out that the effects of an exogenous BDNF application on spine density are not reproduced in all studies, possibly due to different culture conditions (Kellner et al. 2014; Zagrebelsky et al. 2018). Indeed, culture conditions have been shown to influence the neuronal response to BDNF (Chapleau et al. 2008).Nevertheless, the physiological rele- vance of the positive effects of BDNF/TrkB signaling on dendritic spine formation in vitro is supported by the obser- vation that scavenging endogenous BDNF in primary hippo- campalculturesresultsinadecreaseinspinedensity(Kellner etal.2014).Moreover,inhibitionofTrkBreceptoractivation with K252a not only blocked the effect of BDNF but further reduced spine density below control level (Tyler and Pozzo- Miller 2001). (Dorostkar et al. 2015). Ensuring their crucial physiological functions and preventing the severe consequences of their dysfunction under pathological conditions require a very tight regulation of the processes involved in the different phases of the life of dendritic spines. Among the many molecules con- trolling the structure and function of dendritic spines, the brain-derived neurotrophic factor (BDNF) stands out for its compelling activities at all stages of a spine’s life. This review will give an overview about the actions of BDNF signaling, via its receptors in regulating the dendritic spine formation, maturation, and its need for the maintenance of the mature spine phenotype and their plasticity. BDNF is a member of the neurotrophin family, comprising four closely related secreted proteins known to regulate survival, growth, and differentiation of neurons during development as well as activity- dependent synaptic plasticity and processes of learning and memory in the mature CNS (Park and Poo 2013; Zagrebelsky and Korte 2014). Both BDNF and its pre- cursor proBDNF have been shown to be biologically active and exert their actions upon their binding to two transmembrane receptors – the tropomyosin receptor tyrosine kinase B (TrkB), with a higher affinity for the mature form of BDNF, and the p75 Neurotrophin recep- tor (p75NTR) preferentially binding proBDNF (Barbacid 1993; Chao and Hempstead 1995). BDNF is one of the neuroprotective, growth substances released by neurons under stress or pathological conditions, and brain pathologies are associated with the reduction in BDNF release, resulting in lower brain ad blood levels. Thus, BDNF has been suggested as a biomarker for different brain pathologies and for the efficacy of their therapy. Indeed, most currently used treatments are accompanied by significant changes in BDNF expression and release levels. Introduction However, due to space limitations, this review will not address the cur- rent knowledge regarding BDNF signaling in the pathophys- iology and therapy of neurological diseases. „ Fig. 1 a Schematic representation of the intracellular signaling cascades downstream of the binding of BDNF to TrkB and of its precursor proBDNF to p75NTR. BDNF binding to TrkB promotes dendritic spine formation and maturation via the Shc site Erk1/2, to control gene regulation as well as the activation of the PI-3 kinase in order to promote the insertion of TRPC channels at the membrane. Moreover, activation of the PLCγ site promotes the formations of IP3 and the release of Ca2+ from the internal stores. On the contrary, binding of Met variant of proBDNF or of the BDNF pro-peptide results in dendritic spine loss via the inhibition of Rac1 and the activation of caspase-3. b Schematic representation of the signaling initiated by BDNF binding to TrkB and resulting in the long-lasting enlargement of the spine head in a process known as structural potentiation (sLTP). BDNF binding to TrkB induces in this case the polymerization of actin by promoting the activity of Rac1 and Cdc42 within dendritic spines. Moreover, activation of the NMDARs results in an increase in local protein synthesis in a CaMKII- dependent manner possibly also providing the BDNF required to activate TrkB at spines in an autocrine way. Black arrows indicate activation, while the red arrows indicate inhibition Introduction Since their first description by Ramon y Cajal (yCajal 1891), dendritic spines have been postulated to be involved in regu- lating the communication between neurons. Indeed, these tiny membranous protrusions, emerging from the dendrites of most principal neurons, are the postsynaptic site of the major- ity of excitatory glutamatergic synapses in the brain (Gray 1959). Dendritic spines consist of a bulbous head, containing the postsynaptic density and connected to the dendrite via a thin and long neck. Dendritic spines serve as compartments in which calcium (Muller and Connor 1991) and biochemical (Guthrie et al. 1991) and electrical signals (Araya et al. 2006; Grunditz et al. 2008) are confined during glutamatergic transmission, shaping synaptic transmission. * Marta Zagrebelsky m.zagrebelsky@tu-bs.de * Martin Korte m.korte@tu-bs.de 1 Division of Cellular Neurobiology, Zoological Institute, TU Braunschweig, Spielmannstr 7, 38106 Braunschweig, Germany 2 Helmholtz Centre for Infection Research, AG NIND, Inhoffenstr. 7, D-38124 Braunschweig, Germany * Marta Zagrebelsky m.zagrebelsky@tu-bs.de * Martin Korte m.korte@tu-bs.de 1 Division of Cellular Neurobiology, Zoological Institute, TU Braunschweig, Spielmannstr 7, 38106 Braunschweig, Germany 2 Helmholtz Centre for Infection Research, AG NIND, Inhoffenstr. 7, D-38124 Braunschweig, Germany * Marta Zagrebelsky m.zagrebelsky@tu-bs.de Cell Tissue Res (2020) 382:185–199 186 neurons (Gottmann et al. 2009; Ji et al. 2005; Tyler and Pozzo-Miller 2001; for reviews see Zagrebelsky and Korte 2014) and in cerebellar Purkinje cells (Shimada et al. 1998). These growth-promoting effects of BDNF occur in a TrkB- dependent manner. Indeed, activation of TrkB is induced by BDNF application protocols known to increase dendritic spine density (Ji et al. 2010), and the increase in spinedensity upon BDNF treatment is prevented by simultaneously inhibiting the Trk receptors using K252a (Tyler and Pozzo- Miller 2001) or more specifically by TrkB receptor bodies (Shimada et al. 1998). Accordingly, activation of signaling pathways downstream of TrkB has been shown to be in- volved in the effects of BDNF on spine formation (Fig. 1a). The BDNF-induced increase in spine density depends upon themembraneinsertionoftransientreceptorpotentialcanon- ical subfamily 3 (TRPC3) channels promoted by the activa- tion of the TrkB-PLCγ pathway (Amaral and Pozzo-Miller 2007). Also, the activation of MAPK/ERK1/2, downstream of the TrkB-Shc site, is required for the increase in dendritic spine density upon BDNF treatment in hippocampal pyrami- dal neurons (Alonso et al. 2004). Spinogenesis Accordingly, a loss-of-function for BDNF by application of BDNF scavenging antibodies to pri- mary hippocampal neurons resulted in a decrease in dendritic spine head width associated to an increase in length, indicating a less mature phenotype (Kellner et al. 2014). In addition, primary hippocampal and cortical pyramidal neurons show a significant decrease in the proportion of mushroom spines, associated to an increase in one of the thin spines upon cre- mediated deletion of bdnf both in vitro (Zagrebelsky et al. 2018) and in vivo (Rauskolb et al. 2010). In vivo, hippocam- pal pyramidal neurons of a mutant mouse specifically lacking the dendritic localization of BDNF (bdnf klox/klox) show a higher density of longer and thinner dendritic spines in layer 2/3 pyramidal neurons of the visual cortex and in the hippo- campus (An et al. 2008). Furthermore, knocking down specif- ically the long 3′ UTR, dendritic Bdnf mRNA or blocking its Studying the role of BDNF/TrkB signaling in regulating dendritic spine formation in vivo is complicated by the fact that most of the bdnf knockout mice die soon after birth (Jones et al. 1994). Moreover, the conditional deletion of bdnf result- ed in contradictory observations. On one side, a forebrain- specific bdnf knockout mouse (CamKII-BDNFKO), in which BDNF is lost primarily in the cortex and hippocampus during early adulthood showed a delayed decrease in dendritic spine density for layer II/III pyramidal neurons of the visual cortex (Vigers et al. 2012) suggesting a role of BDNF in maintaining dendritic spines rather than in their formation. On the other hand, the complete brain-specific deletion of bdnf in the Tau- BDNFKO mouse showed a significant reduction in spine den- sity for medium spiny neurons (MSNs) of the striatum, but not effects on the spines of hippocampal pyramidal neurons (Rauskolb et al. 2010). Interestingly, the potassium-chloride cotransporter KCC2 has been recently shown to increase den- dritic spine density in a BDNF-dependent manner in the cor- tex but not in the hippocampus (Awad et al. 2018) further underlying the possibility that in vivo the BDNF actions on dendritic spine formation occur in an area-specific manner. Most of the studies addressing the role of BDNF signaling in regulating dendritic spine formation have been performed in the hippocampus or the cortex. Spinogenesis However, more recently the levels of both BDNF and TrkB have been shown to be regu- lated in the nucleus accumbens shell (NACsh) in a mouse model for chronic cocaine addiction (Graham et al. 2007; Graham et al. 2009). Moreover, loss-of-function for either BDNF or TrkB specifically in the NACsh results in reduction in cocaine self-administration (Graham et al. 2007; Graham et al. 2009) suggesting an important role of BDNF/TrkB sig- naling in this context. Psychostimulant drugs induce a series of biochemical and morphological alterations especially in the brain monoamine systems. Treatment with amphetamine or cocaine increases dendritic spine density of MSNs in NACsh and on apical dendrites of layer V pyramidal cells in the prefrontal cortex (Robinson and Kolb 1999). BDNF sig- naling through TrkB in NACsh is necessary for cocaine- induced long-lasting dendritic spine formation in MSNs (Anderson et al. 2017). Intriguingly, while increasing TrkB expression after chronic cocaine administration reverses the increase in dendritic spine density, loss-of-function for TrkB after chronic cocaine self-administration failed to affect spine density (Anderson et al. 2017) indicating an important role of BDNF/TrkB signaling in the cocaine-induced formation of new spines, but not in their maintenance. Spinogenesis Mature dendritic spines have been proposed to develop from filopodia, long thin and highly motile dendritic protrusions upon their contact with an axon (Bonhoeffer and Yuste 2002). The maturation process of dendritic spines involves the progressive increase in their density, associated to a re- duction in the number of filopodia (Dunaevsky et al. 1999; Nimchinsky et al. 2002). Several studies have shown that long-term in vitro treatment with exogenous BDNF in- creases dendritic spine density in pyramidal hippocampal 187 Cell Tissue Res (2020) 382:185–199 187 Cell Tissue Res (2020) 382:185–199 Cell Tissue Res (2020) 382:185–199 188 density and to an increase in the number of inserted neuro- transmitter receptors and scaffold proteins (Harris et al. 1992; Harris and Stevens 1989). These changes are reflected in the proportion of the different spine types, classified based on their morphology by confocal imaging. While thin spines, with their long necks and thin head, are supposed to represent a more immature stage, stubby and mushroom spines are char- acterized by larger postsynaptic densities and higher stability and therefore proposed to be mature spines (Bonhoeffer and Yuste 2002). Loss- and gain-of-function experiments for BDNF in vitro affect dendritic spine morphology, thereby altering the distribution of different spine types. Specifically, BDNF treatment in organotypic hippocampal cultures result- ed in an increase in the proportion of stubby and a reduction in the one of mushroom spines (Tyler and Pozzo-Miller 2003). Moreover, acute and gradual BDNF application in primary hippocampal neurons resulted respectively in a fast and tran- sient activation of TrkB and ERK1/2 associated to spine head enlargement or in a sustained TrkB and ERK1/2 activation accompanied by spine neck elongation (Fig. 1a; Ji et al. 2010). These observations underlie the importance of how BDNF itself is delivered. Moreover, it is important to point out that the effects of an exogenous BDNF application on dendritic spine maturation in hippocampal neurons depend on neuronal activity. When BDNF was applied together with botulinum toxin C to block miniature synaptic neurotransmit- ter release, the proportion of long and thin possibly immature spines was increased (Tyler and Pozzo-Miller 2003). Also, application of BDNF to hippocampal cultures kept in a high magnesium containing medium showed a significant increase in the proportion of mature spines with larger heads with a comparable significant decrease in the proportion of immature spines with small heads. Dendritic spine maturation and stabilization Recent evidence implicates BDNF in regulat- ing activity-dependent structural plasticity at spines as BDNF/TrkB signaling is necessary and sufficient to induce long-lasting structural changes at dendritic spines upon LTP induction (Tanaka et al. 2008). Synaptic stimulation by glu- tamate uncaging was paired with postsynaptic spikes, a pro- tocol resulting in the gradual and long-lasting spine head enlargement also known as structural LTP (sLTP; Matsuzaki et al. 2004). Here the progressive and long- lasting spine head enlargement upon pre- to postsynaptic pairing was shown to depend on TrkB (Tanaka et al. 2008). While the secretion of BDNF could not be directly shown, the authors suggested an autocrine function of BDNF released from the postsynaptic neuron in this context (Fig. 1b). More recently, fluorescence resonance energy transfer-based sensor for TrkB and two-photon fluores- cence lifetime imaging were combined to monitor TrkB activity at single dendritic spines of CA1 pyramidal neurons upon sLTP. The results obtained describe in stimulated spines a fast, followed by a sustained activation of TrkB depending on the postsynaptic synthesis of BDNF and its release at single spines (Harward et al. 2016). While these results come with the limitation that they are based on the ectopic overexpression of pHluorin-fused BDNF and pos- sibly do not represent the endogenous conditions, they are noteworthy in supporting a crucial role of postsynaptic BDNF/TrkB signaling not only for functional but also for structural plasticity at spines. Indeed, BDNF has been shown to be a newly a synthetized product required for the maintenance of late LTP (Pang et al. 2004). A dense network of actin cytoskeleton underlies the struc- f d d i i i d i i d i h Overexpression of the postsynaptic density scaffold pro- tein PSD-95 drives the maturation of glutamatergic excit- atory synapses and increases dendritic spine density (El- Husseini et al. 2000). In cortical pyramidal neurons, the localization of PSD-95 at spines correlates with an increase in their stability over time (Cane et al. 2014). Interestingly, the TrkB receptor has been shown to be associated to PSD- 95, and its activation, upon BDNF binding, increases the recruitment of the postsynaptic density protein to synapses via the PI3K pathway (Yoshii and Constantine-Paton 2007). Furthermore, BDNF/TrkB signaling increases PSD-95 lo- calization at dendritic spines by prolonging the microtubule invasions (Hu et al. 2011). PSD-95 binds many postsynaptic molecules that can regulate dendritic spine growth. Dendritic spine maturation and stabilization For ex- ample, PSD-95 binds Kalirin, a neuronal Rho guanine nu- cleotide exchange factor (Rho-GEF) that facilitates actin polymerization within spines, thereby increasing both their number and their size (Penzes et al. 2001). Taken together these observations suggest a crucial role of BDNF signaling via its TrkB receptor in promoting dendritic spine matura- tion and stabilization. On the other hand, it has to be men- tioned that in developing pyramidal neurons in organotypic slice cultures of ferret visual cortex, the overexpression of BDNF resulted in an increase in the remodeling of dendritic spines, possibly acting through an autocrine loop (Horch et al. 1999). Dendritic spine maturation and stabilization The results obtained describe in stimulated spines a fast, followed by a sustained activation of TrkB depending on the postsynaptic synthesis of BDNF and its release at single spines (Harward et al. 2016). While these results come with the limitation that they are based on the ectopic overexpression of pHluorin-fused BDNF and pos- sibly do not represent the endogenous conditions, they are noteworthy in supporting a crucial role of postsynaptic BDNF/TrkB signaling not only for functional but also for structural plasticity at spines. Indeed, BDNF has been shown to be a newly a synthetized product required for the maintenance of late LTP (Pang et al. 2004). A dense network of actin cytoskeleton underlies the struc- via TrkB. Expression of a dominant negative TrkB receptor in pyramidal neurons of the visual cortex resulted in the reduced maintenance of mushroom spines accompanied by an increase in the density of long and thin spines (Chakravarthy et al. 2006). Also, a recent study showed that copine-6, a C2- domain-contaning protein mediating calcium-dependent bind- ing to membrane phospholipids, is recruited to spines upon BDFN application and promotes BDNF-dependent changes in dendritic spine morphology by recycling activated TrkB receptors to the membrane surface (Burk et al. 2018). (Grutzendler et al. 2002; Trachtenberg et al. 2002), provid- ing the structural correlate for the long-term storage of in- formation, structural plasticity of dendritic spines is re- quired for learning and memory formation (Hayashi- Takagi et al. 2015; Xu et al. 2009; Yang et al. 2014a; Yang et al. 2009a). Structural plasticity at spines relies upon the activation of a series of intracellular signaling cascades mostly regulating the remodeling of the actin cytoskeleton and protein synthesis. Among the extracellular factors im- pinging on these intracellular signaling cascades, BDNF is for several reasons of special interest. BDNF is released by neurons in an activity-dependent manner (Goodman et al. 1996; Griesbeck et al. 1999) and specifically upon LTP- inducing electrical stimulation in hippocampal neurons (Gartner and Staiger 2002). Moreover, BDNF signaling modulates dendritic spine morphology and is required both for induction and maintenance of LTP (Korte et al. 1995; Kovalchuk et al. 2002; Zagrebelsky and Korte 2014) and for learning and memory processes (Alonso et al. 2002; Petzold et al. 2015). Dendritic spine maturation and stabilization Dendritic spine maturation is characterized morphologically by an overall decrease in spine length and motility (Dailey and Smith 1996; Marrs et al. 2001) and an increase in spine head volume correlated to an enlargement of the postsynaptic Several lines of evidence indicate that the role of BDNF in promoting dendritic spine maturation depends on its signaling Cell Tissue Res (2020) 382:185–199 189 (Grutzendler et al. 2002; Trachtenberg et al. 2002), provid- ing the structural correlate for the long-term storage of in- formation, structural plasticity of dendritic spines is re- quired for learning and memory formation (Hayashi- Takagi et al. 2015; Xu et al. 2009; Yang et al. 2014a; Yang et al. 2009a). Structural plasticity at spines relies upon the activation of a series of intracellular signaling cascades mostly regulating the remodeling of the actin cytoskeleton and protein synthesis. Among the extracellular factors im- pinging on these intracellular signaling cascades, BDNF is for several reasons of special interest. BDNF is released by neurons in an activity-dependent manner (Goodman et al. 1996; Griesbeck et al. 1999) and specifically upon LTP- inducing electrical stimulation in hippocampal neurons (Gartner and Staiger 2002). Moreover, BDNF signaling modulates dendritic spine morphology and is required both for induction and maintenance of LTP (Korte et al. 1995; Kovalchuk et al. 2002; Zagrebelsky and Korte 2014) and for learning and memory processes (Alonso et al. 2002; Petzold et al. 2015). Recent evidence implicates BDNF in regulat- ing activity-dependent structural plasticity at spines as BDNF/TrkB signaling is necessary and sufficient to induce long-lasting structural changes at dendritic spines upon LTP induction (Tanaka et al. 2008). Synaptic stimulation by glu- tamate uncaging was paired with postsynaptic spikes, a pro- tocol resulting in the gradual and long-lasting spine head enlargement also known as structural LTP (sLTP; Matsuzaki et al. 2004). Here the progressive and long- lasting spine head enlargement upon pre- to postsynaptic pairing was shown to depend on TrkB (Tanaka et al. 2008). While the secretion of BDNF could not be directly shown, the authors suggested an autocrine function of BDNF released from the postsynaptic neuron in this context (Fig. 1b). More recently, fluorescence resonance energy transfer-based sensor for TrkB and two-photon fluores- cence lifetime imaging were combined to monitor TrkB activity at single dendritic spines of CA1 pyramidal neurons upon sLTP. Involvement of BDNF signaling in learning-induced structural plasticity in vivo 2015) and prevents fear extinction (Peters et al. 2010; Rosas-Vidal et al. 2014) or consolidation (Chhatwal et al. 2006). Learning and memory processes are associated with structural alterations at dendritic spines in the hippocampus, cortex, and amygdala (Heinrichs et al. 2013; Lai et al. 2012; Leuner and Shors 2004; Moser et al. 1994; Vetere et al. 2011a; Vetere et al. 2011b), and BDNF modulates dendritic spine number and structure both during development and in the adult brain. However, while the evidence for a role for BDNF in promoting structural plasticity at spines in vivo dur- ing learning and memory processes is still largely correlative, one recent study provided direct evidence for a role of BDNF signaling in promoting formation of new dendritic spines up- on motor learning. This study analyzed the role of microglia produced BDNF in this context. Although the major source of BDNF in the adult brain appears to be neurons (Rauskolb et al. 2010; Dieni et al. 2012), BDNF can also be detected in oligodendrocytes, astrocytes, and microglia (Dougherty et al. 2000). Conditional deletion of BDNF from microglia resulted in the impairment of motor learning associated to an impair- ment in the learning-induced formation of new dendritic spines in the motor cortex (Parkhurst et al. 2013) suggesting a new BDNF-mediated role for microglia in locally modulat- ing specific subsets of synaptic connections possibly involved in specific learning tasks. Sustained structural plasticity of spines requires activity- dependent protein synthesis (Bosch et al. 2014; Govindarajan et al. 2011; Tanaka et al. 2008). For several plasticity-relevant proteins (i.e., β-actin and CaMKII; Miller et al. 2002; Tiruchinapalli et al. 2003), the mRNAs are bidirectionally transported along microtubule in den- drites in an activity-dependent manner and stop at the base of stimulated spines suggesting their regulated local trans- lation upon sLTP induction (Buxbaum et al. 2015). While it is not yet conclusively shown that BDNF promotes dendrit- ic spine morphogenesis upon activity-dependent plasticity by regulating local protein synthesis, different lines of evi- dence suggest this possibility. BDNF is now clearly impli- cated in promoting local protein synthesis by the observa- tions that its application increases the incorporation of radio labeled amino acids and promotes the translation of a fluo- rescent translation reporter also in isolated dendrites and in synaptosomes (Aakalu et al. 2001; Takei et al. 2004). Involvement of BDNF signaling in learning-induced structural plasticity in vivo 2010). Cytoskeletal remodeling depends upon the activation of the small GTPase proteins (Nakahata and Yasuda 2018). Specifically, the precise spatiotemporally coordinated activa- tion of RhoA, Rac1, and Cdc42 downstream of the Ca2+/cal- modulin kinase II (CaMKII; Lee et al. 2009; Matsuzaki et al. 2004) underlies sLTP (Bosch et al. 2014; Murakoshi et al. 2011). BDNF signaling modulates the activation of actin binding proteins (Fass et al. 2004; Gehler et al. 2004) down- stream of Rho GTPases (Briz et al. 2015). Indeed, exogenous application of BDNF signaling via TrkB in rat hippocampal slices promotes actin polymerization resulting in an increase in the number of dendritic spines containing F-actin, and co- application of TrkB receptor bodies prevents the actin poly- merization induced by LTP-inducing theta burst stimulation (Rex et al. 2007). These results indicate that BDNF is a crucial component in promoting LTP-related cytoskeletal changes at dendritic spines. A recent study confirmed this hypothesis by showing the critical role of BDNF in inducing the coordinated activation of Rho GTPases during sLTP (Hedrick et al. 2016). Specifically, BDNF signaling via TrkB postsynaptically acti- vates Cdc42 and Rac1, but not RhoA (Hedrick et al. 2016). Interestingly, this action of BDNF supports the input specific- ity and the heterosynaptic facilitation typically observed in sLTP by activating on one side a spine-specific signaling com- prising BDNF–TrkB–Cdc42, and a diffuse one comprising BDNF–TrkB–Rac1 signaling. Moreover, these results en- lighten the facilitation of plasticity observed upon BDNF treatment by priming spines to sLTP via the activation of Rho GTPases. A role of BDNF in regulating learning and memory processes has been suggested by several studies often based on purely correlative evidence. Indeed, BDNF and TrkB expression (Gomez-Pinilla et al. 2001; Hall et al. 2000; Silhol et al. 2007) and TrkB phosphorylation (Gooney et al. 2002) are rapidly induced in the hippocampus upon contextual spatial learning. And, fear extinction training has been shown to in- crease BDNF expression in the ventral hippocampus (Peters et al. 2010; Rosas-Vidal et al. 2014). Gain-of-function ap- proaches for BDNF and TrkB in the hippocampus improve spatial learning performance (Cirulli et al. 2004; Koponen et al. 2004; Nakajo et al. 2008) and in the infralimbic cortex facilitate fear extinction (Peters et al. 2010). On the contrary, interfering with the BDNF/TrkB signaling results in impaired performance in the water maze task (Mu et al. 1999; Petzold et al. Involvement of BDNF signaling in learning-induced structural plasticity in vivo Moreover, BDNF application induces a protein synthesis- dependent form of LTP (Kang and Schuman 1996; Kang and Schuman 1995) opening the possibility that BDNF pro- motes structural plasticity at spines both by promoting the cytoskeletal reorganization and the local protein synthesis of plasticity promoting proteins. Role of BDNF signaling in activity-dependent struc- tural plasticity at spines Long-term synaptic plasticity, i.e., LTP and LTD, repre- sents the cellular mechanism underlying learning and mem- ory processes. Both LTP and LTD have been shown to be associated to structural changes at dendritic spines (Engert and Bonhoeffer 1999; Yuste and Bonhoeffer 2001). Specifically, LTP induction results in long-lasting spine head enlargement (Matsuzaki et al. 2004), while LTD re- sults in its shrinkage (Nagerl et al. 2004; Zhou et al. 2004; for a review see Holtmaat and Svoboda 2009) reflecting changes in the number of neurotransmitter receptors (Kopec et al. 2006) and in the spine responsiveness to glu- tamate (Matsuzaki et al. 2004). While in vivo dendritic spines have been shown to remain stable over months A dense network of actin cytoskeleton underlies the struc- ture of dendritic spines and via its dynamics supports the structural changes at spines during plasticity processes (Colgan and Yasuda 2014; Hotulainen and Hoogenraad 190 Cell Tissue Res (2020) 382:185–199 Autocrine versus local paracrine BDNF actions BDNF is a sticky, positively charged protein whose biochem- ical characteristics prevent its diffusion within the target re- gion and indicate that BDNF is only acting locally at synapses (few micrometers range; Horch and Katz 2002). Moreover, defining the locus of BDNF functional secretion is made by difficult its very low endogenous amounts. Taken together the low endogenous amounts and the locally restricted actions of BDNF complicate the distinction between autocrine and local paracrine signaling. However, a few studies made use of chi- mera neuronal cultures to address this issue in the context of the activity of BDNF on neuronal architecture and dendritic spines and provided strong evidence for a cell autonomous, autocrine mode of action for BDNF in this context. Particularly, a sparse deletion of BDNF in adult born granule cells of the dentate gyrus resulted in shorter dendrites and impaired spino- and synaptogenesis in a cell autonomous manner (Wang et al., 2015). Accordingly, BDNF overexpres- sion in pyramidal neurons of the visual cortex induced struc- tural instability specifically of dendrites and spines in BDNF expressing neurons (Horch et al. 1999). On the other hand, the same authors also showed locally restricted increase in den- drite density upon BDNF overexpression in neighboring, non- transfected neurons, depending on BDNF release indicating a local paracrine action of BDNF (Horch and Katz 2002). These observations suggest the possibility of a self-amplifying auto- crine BDNF signaling as shown at early stages of axonal de- velopment (Cheng et al. 2011). Finally, recent studies con- vincingly demonstrated a spine-autonomous, autocrine mode of action for endogenous BDNF in regulating structural LTP at a single spine level (Harward et al., 2016; Hedrick et al. 2016) as well as theta burst-induced LTP (Edelmann et al., 2015; Brigadski and Lessmann 2020). Impairments in the BDNF/TrkB signaling are highly cor- related with cognitive impairment and dendritic spine changes during aging. Indeed, TrkB expression and activation have been shown to be reduced in aged rodents and humans (Buhusi et al. 2017; Croll et al. 1998; Gooney et al. 2004; Webster et al. 2006). However, there is less consensus about the effect of aging on BDNF levels. In humans, although increasing age in health individuals has been associated with reduced levels of serum BDNF and poorer memory perfor- mance (Shimada et al. 2014; Siuda et al. Autocrine versus local paracrine BDNF actions 2017), no changes in BDNF mRNA in the hippocampus and temporal cortex were detected from postmortem brains (Webster et al. 2006). While in mice, BDNF levels did not change in the hippocampus with age (Buhusi et al. 2017), aged cognitively impaired rats displayed a lower increase in training-induced BDNF mRNA level than aged non-impaired rats in the CA1 region of the hippocampus (Schaaf et al. 2001). Furthermore, BDNF- induced LTP and its downstream signaling were significantly impaired in aged rats (Gooney et al. 2004). Accordingly, aged mutant mice carrying a deletion in one copy of the BDNF gene performed significantly worse than controls (Linnarsson et al. 1997). Cognitive unimpaired aged rats show no alterations in spine density associated to normal levels of TrkB expression, activation, and downstream signaling (Zeng et al. 2012b), and lower levels of TrkB expression, activation, and downstream signaling are associated with lower spine density and impaired hippocampus-dependent learning in aged rats (Zeng et al. 2012b). Intriguingly, the cognitive im- pairment as well as the decrease in spine number could be rescued by a treatment with the TrkB agonist 7,8- sihydroxyflavone (7,8-DHF; Zeng et al. 2012b) strengthening the link between BDNF/TrkB signaling and spine loss upon aging. Moreover, proBDNF and P75NTR, exerting a negative Involvement of BDNF in age-dependent dendritic spine alterations Aging in the CNS is a physiological process characterized by the progressive decrease in brain volume and decline in brain function leading to different degrees of cognitive impairment. The cognitive decline seems not to reflect neuronal loss, oc- curring in fact only in few brain areas (Cabello et al. 2002; Stranahan et al. 2012; Woodruff-Pak et al. 2010), but rather Cell Tissue Res (2020) 382:185–199 191 subtle structural changes in network connectivity at the level of dendritic spines. An age-related progressive loss of dendrit- ic spines was shown for the cerebral cortex and the hippocam- pus of rodents, non-human primates, and humans (Dumitriu et al. 2010; Feldman and Dowd 1975; Jacobs et al. 1997; Luebke et al. 2010; von Bohlen und Halbach et al. 2006) and is correlated to age-related cognitive impairment in Rhesus monkeys (Dickstein et al. 2013) and impairment of hippocampus-dependent spatial learning in aged rodents (von Bohlen und Halbach et al. 2006; Zeng et al. 2012b). Moreover, cognitively unimpaired aged rats show no alter- ations in spine density (Zeng et al. 2012b) strengthening the functional relevance of the age-dependent spine loss. Moreover, some studies described alterations in the proportion of spine types with a predominance of larger spines in older animals (Xu et al. 2018) and an increase in their stability (Mostany et al. 2013). This observation is relevant to the cog- nitive impairment as smaller, thin spines have been shown to be especially important for memory storage (Bourne and Harris 2007). regulation on dendritic spine density and plasticity, are upreg- ulated in aged mice (Buhusi et al. 2017; Costantini et al. 2005; Perovic et al. 2013), and hippocampal proBDNF levels are inversely correlated with spatial memory in aged mice (Buhusi et al. 2017). In spite of the correlative evidence for a role of the age-dependent alteration in BDNF/TrkB signal- ing and dendritic spine loss, studies causally linking these two events are still lacking, which would be a prerequisite for a rational therapeutic intervention using BDNF or TrkB agonists. BDNF/TrkB and proBDNF/p75NTR: functional antagonisms in regulating dendritic spine structure and plasticity Intriguingly, slices maintained in serum media showed a lower p75NTR-to-TrkB expression level than serum-free slices (Chapleau et al. 2008) supporting the idea of the opposing functional signaling by on the one hand of proBDNF/p75NTR and on the other hand of BDNF/TrkB ligand-receptor interaction. Accordingly, pyra- midal neurons of the hippocampus of p75NTR knockout mice have a significantly higher dendritic spine density associated with a decrease in the proportion of stubby spines (Zagrebelsky et al. 2005). However, whether proBDNF is secreted by neurons in vivo under physiological conditions, it is still under debate. While some studies showed that BDNF and its pro-peptide are stored in presynaptic dense core vesi- cles and are secreted together (Dieni et al. 2012) suggesting an intracellular cleavage (Matsumoto et al. 2008), others showed proBDNF release by neurons (Yang et al. 2009b) and its activity-dependent extracellular cleavage (Nagappan et al. 2009; Pang et al. 2004). It is noteworthy that the physiological relevance of the proBDNF/p75NTR signaling in neuronal plas- ticity is supported by the observation that a low-frequency stimulation results in the release of proBDNF (Nagappan et al. 2009) leading to the p75NTR-dependent facilitation of LTD (Woo et al. 2005). Moreover, proBDNF/p75NTR signal- ing was shown to mediate the synaptic depression observed in neighboring, non-coactive spines upon strengthening of syn- aptic connections via spontaneous activity in the hippocampus (Winnubst et al. 2015). To further evaluate the role of the endogenous proBDNF i i d d i i i i d h k ki y p p y It was generally believed that after cleavage, the BDNF pro-peptide is rapidly degraded. But it was shown that in the hippocampus, the mature BDNF, and its pro-peptide are stored together in dense core vesicles and are secreted in equi- molar ratios at a ten times higher concentration than proBDNF (Dieni et al. 2012). The secretion of the BDNF pro-peptide from hippocampal neurons in vitro occurs in an activity- dependent manner (Anastasia et al. 2013; Guo et al. 2016; Mizui et al. 2015). A common single-nucleotide substitution in the human bdnf gene results in a Val66Met substitution in the BDNF pro-peptide sequence and has been shown to affect activity-dependent BDNF secretion and to be associated with a decrease in hippocampal volume, impairment of episodic memory, and increase in depression and anxiety disorders (Chen et al. 2006; Egan et al. 2003; Soliman et al. 2010; Verhagen et al. 2010). BDNF/TrkB and proBDNF/p75NTR: functional antagonisms in regulating dendritic spine structure and plasticity BDNF is initially synthetized as a precursor proBDNF which is cleaved to produce the mature protein exerting a series of positive actions on neuronal structure and plasticity processes Cell Tissue Res (2020) 382:185–199 192 specific secretion of proBDNF upon neuronal stimulation. In probdnf-HA/+ mice, a significant decrease in dendritic spine density was observed which was greater than the one shown by heterozygous bdnf knockout mice indicating that proBDNF exerts specific negative effects on dendritic spines density (Yang et al. 2014b). Moreover, while in hippocampal neurons the constitutive somatic synthesis of BDNF promotes dendritic spine formation in a TrkB-dependent manner (An et al. 2008; Orefice et al. 2013), neuronal activity promotes the translation of dendritic bdnf mRNA and the secretion of its translation product mostly as proBDNF (Orefice et al. 2016). The proBDNF secreted under these conditions binds to p75NTR resulting in increased dendritic spine pruning (Orefice et al. 2016). While no data so far show a role of proBDNF in modulating structural plasticity at spines in probdnf-HA/+ mice, theta burst-induced LTP is impaired and LTD is enhanced (Yang et al. 2014b) showing its ability to modulate synaptic plasticity. via its specific binding to TrkB. While p75NTR also binds the mature BDNF, albeit at a lower affinity, it preferentially me- diates the action of proBDNF (Lee et al. 2001). While the BDNF/TrkB-induced modulation of dendritic spine structure and plasticity is well described (see above; Minichiello 2009; Zagrebelsky and Korte 2014), the role of proBDNF/p75NTR signaling in this context remains less investigated. The appli- cation of exogenous uncleavable proBDNF (CR-proBDNF) in vitro suggests that it exerts opposite effects than mature BDNF (Cowansage et al. 2010; Lu et al. 2005; Teng et al. 2010). While the treatment of mature hippocampal neurons with BDNF increases their dendritic spine density, application of CR-proBDNF significantly reduced it without affecting neuronal survival (Koshimizu et al. 2009). These opposite actions of proBDNF and BDNF on dendritic spines are complemented by the observation that the actions of exoge- nous BDNF on the pyramidal neurons of slice cultures depend on the presence of serum in the medium. Indeed, while BDNF exposure of slices kept in serum-free conditions increases the proportion of stubby spines, in serum-containing media, the same treatment induces an increase in the proportion of mush- room and thin spines and a decrease of one of the stubby spines (Chapleau et al. 2008). TrkB signaling at dendritic spines in the absence of neurotrophins BDNF is considered to be the prototypical neurotrophin li- gand for the TrkB receptor, inducing its dimerization and ac- tivation by tyrosine phosphorylation. However, TrkB can autophosphorylate and activate its downstream signaling without BDNF in a process of transactivation depending on the Src family of tyrosine kinases (Lee and Chao 2001; Rajagopal and Chao 2006; Rajagopal et al. 2004). Transactivation of TrkB is mediated by G protein-coupled adenosine 2A or dopamine D1 receptors (Iwakura et al. 2008; Lee and Chao 2001; Wiese et al. 2007) and by an EGF-EGF receptor-induced Src-dependent pathway (Puehringer et al. 2013). In hippocampal neurons, the divalent cation zinc transactivates TrkB in a BDNF-independent man- ner and Src family in a kinase-dependent manner resulting in the potentiation of the mossy fiber-CA3 synapses (Huang et al. 2008). A recent study provided evidence for a role of zinc-mediated TrkB transactivation in regulating both dendrit- ic morphology and spine density in mature primary hippocam- pal neurons (Zagrebelsky et al. 2018). Moreover, cocaine treatment has been shown to increase dendritic spine density in hippocampal neurons by promoting TrkB transactivation via the Sigma-1 receptor (Ka et al. 2016). Transactivation of TrkB results in biologically relevant consequences both in the healthy brain, where it regulates neuronal migration, architec- ture. and plasticity as well as under pathological conditions, and it should be further explored as a signaling route utilized for therapeutic approaches in neurodegenerative diseases as well as depression. Small-molecule mimetics of BDNF reported to act specif- ically on TrkB showed beneficial effects in rescuing the symp- toms of different diseases in animal models; however, only few studies investigated their ability to prevent or rescue den- dritic spine pathology. Below we highlight these studies. p p gy g g The most studied TrkB agonist is the 7,8-dihydroxyflavone (7,8-DHF), a member of the flavonoids family shown to cross the blood-brain barrier and to bind to TrkB with high affinity (Jang et al. 2010). In vivo studies indicate that peripheral administration of 7,8-DHF enhances emotional learning and rescues memory impairment in several rodent models (Andero et al. 2012; Choi et al. 2012; Liu et al. 2010). Specifically regarding dendritic spines, in aged rats, administration of 7,8-dihydroxyflavone improved cognitive impairment in the Morris water maze and rescued spine density in the hippocam- pus (Zeng et al. 2012b). BDNF/TrkB and proBDNF/p75NTR: functional antagonisms in regulating dendritic spine structure and plasticity A recent study provided exciting evi- dence for a role in vivo of the Met66 BDNF pro-peptide var- iant by showing that its administration to the ventral hippo- campus triggers the disassembly of mushroom spines and the loss of synapses in CA1 pyramidal neurons by mobilizing different actin regulators through its interaction with the SorCS2/p75NTR receptor complex, thereby disrupting cued fear extinction (Giza et al. 2018). that the BDNF pro-peptide and its naturally occurring poly- morphism are negative regulators of neuronal structure and functional plasticity. A recent study provided exciting evi- dence for a role in vivo of the Met66 BDNF pro-peptide var- iant by showing that its administration to the ventral hippo- campus triggers the disassembly of mushroom spines and the loss of synapses in CA1 pyramidal neurons by mobilizing different actin regulators through its interaction with the SorCS2/p75NTR receptor complex, thereby disrupting cued fear extinction (Giza et al. 2018). TrkB signaling at dendritic spines in the absence of neurotrophins Moreover, treatment with 7,8-DHF restored dendritic spine density in several brain regions asso- ciated with fear memory, including the amygdala and prefron- tal cortex, and improved the performance in a fear condition- ing tasks to a level similar to the one of young animals (Zeng et al. 2012a). In two different Alzheimer mouse models, den- dritic spine loss could be prevented and spatial memory im- proved by the administration of 7,8-DHF and of its prodrug R13 (Chen et al. 2018; Gao et al. 2016). Moreover, R13 res- cued dendritic spine density and promoted spine maturation in neurons of the perirhinal cortex in a mouse model of the X- linked cyclin-dependent kinase-like 5 deficiency disorders (Ren et al. 2019). These structural improvements were accom- panied by the rescue of LTP and visual recognition memory (Ren et al. 2019). Finally, postnatal injection with 7,8-DHF in a mouse model of Down syndrome rescued dendritic spine number and levels of the presynaptic protein synaptophysin (Stagni et al. 2017) and was able to ameliorate the TrkB/p75NTR imbalance, seen in Huntington’s disease (Garcia-Diaz Barriga et al. 2017). A second well-studied TrkB agonist, LM22A-4 (Massa et al. 2010), is a small mol- ecule identified in silico for its high affinity specific binding to TrkB and has been shown to prevent spine loss in striatal BDNF/TrkB and proBDNF/p75NTR: functional antagonisms in regulating dendritic spine structure and plasticity Recently the Met66 variant of the BDNF pro-peptide has been identified as a new, biologically active ligand able to modulate neuronal morphology and plas- ticity. Application of Met66 BDNF pro-peptide to hippocam- pal neurons resulted in growth cone collapse in a p75NTR- dependent manner via its interaction with the sortilin-related Vps10p-domain sorting receptor 2 (SorCS2) known to facili- tate the interaction of p75NTR with downstream signaling pro- teins (Anastasia et al. 2013). Moreover, exposure of mature hippocampal neurons to BDNF pro-peptide significantly re- duces dendritic spine density via the activation of caspase-3 (Guo et al. 2016). And treatment with purified recombinant BDNF pro-peptide significantly enhances LTD in a p75NTR- dependent manner by promoting NMDS-triggered GluA2 en- docytosis (Mizui et al. 2015). Interestingly, while the Val66 BDNF pro-peptide enhanced LTD, the Met66 variant mark- edly reduced it (Mizui et al. 2015). Together with the obser- vation that the Met66 BDNF pro-peptide variant alters its structure, influencing the interaction with SorCS2 and its bi- ological activity, the results so far suggest the interesting idea To further evaluate the role of the endogenous proBDNF in vivo on dendritic spines in depth, a knockin mouse was generated expressing one mutated, uncleavable probdnf-HA allele (probdnf-HA/+; Yang et al. 2014b) resulting in the Cell Tissue Res (2020) 382:185–199 193 neurodegenerative, neurodevelopmental, and neuropsychiat- ric diseases (for review see Duman et al. 2019; Gupta et al. 2013; Li and Pozzo-Miller 2014; Zuccato and Cattaneo 2009), characterized, among others, by dendritic spine alterations (for review see Bloss et al. 2011; Qiao et al. 2016; Xu et al. 2014). Thus, the possibility of applying BDNF as a therapeutic agent has been tested in numerous disease models, and the results show beneficial effects both in vitro and in vivo (de Pins et al. 2019; Jiao et al. 2016; Khalin et al. 2016; Zuccato and Cattaneo 2009). However, due to the poor pharmacological properties of BDNF, clinical trials could not reproduce in patients the therapeutic efficacy of BDNF observed in animal models (Lu et al. 2013). Among the possible approaches to circumvent the poor drug-like properties of BDNF, of rele- vance, is the development of highly selective TrkB agonists. that the BDNF pro-peptide and its naturally occurring poly- morphism are negative regulators of neuronal structure and functional plasticity. Specific TrkB agonists Inhibiting BDNF/TrkB signaling negatively influences den- dritic spine number (Ji et al. 2010; Kellner et al. 2014; Tyler and Pozzo-Miller 2001), changes spine morphology towards a more immature phenotype (Kellner et al. 2014), inhibits long- term potentiation (Korte et al. 1995; Korte et al. 1998), and impairs learning and memory processes (Blank et al. 2016; Heldt et al. 2007). Impaired BDNF/TrkB signaling is associ- ated with several neurological disorders, including 194 Cell Tissue Res (2020) 382:185–199 MSNs and to improve motor deficits, in a mouse model of Huntington’s disease (Simmons et al. 2013). Alonso M, Vianna MR, Depino AM, Mello e Souza T, Pereira P, Szapiro G, Viola H, Pitossi F, Izquierdo I, Medina JH (2002) BDNF- triggered events in the rat hippocampus are required for both short- and long-term memory formation. Hippocampus 12:551–560 In summary, the TrkB agonists have shown their propen- sity to rescue dendritic spine density in aging and in several disease murine models, contributing to restoring some of the typical symptoms. In contrast to methods trying to increase BDNF levels, TrkB agonists have the advantage to avert pos- sible pleiotropic effects due to binding of BDNF to the p75NTR, avoiding to activate its negative modulation of spine structure and plasticity. However, it has to be mentioned that two independent studies were unable to detect activation of TrkB signaling by these compounds in vitro (Boltaev et al. 2017; Todd et al. 2014) contradicting previous reports that propose small molecules as specific TrkB agonists and sug- gesting that further research is required to identify and screen molecules. Interestingly, new TrkB agonist monoclonal anti- bodies have been identified that induce receptor activation in a manner consistent with the activation profile of BDNF (Merkouris et al. 2018; Todd et al. 2014) opening new inter- esting windows of opportunities which should be further developed. nd long-term memory formation. Hippocampus 12:551–560 Amaral MD, Pozzo-Miller L (2007) TRPC3 channels are necessary for brain-derived neurotrophic factor to activate a nonselective cationic current and to induce dendritic spine formation. J Neurosci 27: 5179–5189 An JJ, Gharami K, Liao GY, Woo NH, Lau AG, Vanevski F, Torre ER, Jones KR, Feng Y, Lu B, Xu B (2008) Distinct role of long 3' UTR BDNF mRNA in spine morphology and synaptic plasticity in hip- pocampal neurons. Compliance with ethical standards Barbacid M (1993) Nerve growth factor: a tale of two receptors. Oncogene 8:2033–2042 Conflict of interest The authors declare that they have no conflict of interest. Conflict of interest The authors declare that they have no conflict of interest. Blank M, Petry FS, Lichtenfels M, Valiati FE, Dornelles AS, Roesler R (2016) TrkB blockade in the hippocampus after training or retrieval impairs memory: protection from consolidation impairment by his- tone deacetylase inhibition. J Neural Transm (Vienna) 123:159–165 Ethical approval This article does not contain any studies with animals performed by any of the authors. Ethical approval This article does not contain any studies with animals performed by any of the authors. Bloss E, Morrison J, Hof P, Dickstein D (2011) Influence of aging and neurodegeneration on dendritic spine morphology. Transl Neurosci 2(1):49–60. https://doi.org/10.2478/s13380-0008-3 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adap- tation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, pro- vide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. Boltaev U, Meyer Y, Tolibzoda F, Jacques T, Gassaway M, Xu Q, Wagner F, Zhang YL, Palmer M, Holson E, Sames D (2017) Multiplex quantitative assays indicate a need for reevaluating report- ed small-molecule TrkB agonists. Sci Signal 10(493):eaal1670. https://doi.org/10.1126/scisignal.aal1670 Bonhoeffer T, Yuste R (2002) Spine motility. Phenomenology, mecha- nisms and function. Neuron 35(3):1019–1027 Bosch M, Castro J, Saneyoshi T, Matsuno H, Sur M, Hayashi Y (2014) Structural and molecular remodeling of dendritic spine substructures during long-term potentiation. Neuron 82:444–459 Bourne J, Harris KM (2007) Do thin spines learn to be mushroom spines that remember? Curr Opin Neurobiol 17:381–386 Brigadski, T., Lessmann, V. (2020). The physiology of regulated BDNF release. Cell Tissue Res. Specific TrkB agonists Cell 134:175–187 Anastasia A, Deinhardt K, Chao MV, Will NE, Irmady K, Lee FS, Hempstead BL, Bracken C (2013) Val66Met polymorphism of BDNF alters prodomain structure to induce neuronal growth cone retraction. Nat Commun 4:2490 Andero R, Daviu N, Escorihuela RM, Nadal R, Armario A (2012) 7,8- dihydroxyflavone, a TrkB receptor agonist, blocks long-term spatial memory impairment caused by immobilization stress in rats. Hippocampus 22:399–408 Anderson EM, Wissman AM, Chemplanikal J, Buzin N, Guzman D, Larson EB, Neve RL, Nestler EJ, Cowan CW, Self DW (2017) BDNF-TrkB controls cocaine-induced dendritic spines in rodent nucleus accumbens dissociated from increases in addictive behav- iors. Proc Natl Acad Sci U S A 114:9469–9474 iors. Proc Natl Acad Sci U S A 114:9469–9474 Araya R, Jiang J, Eisenthal KB, Yuste R (2006) The spine neck filters membrane potentials. Proc Natl Acad Sci U S A 103:17961–17966 Awad PN, Amegandjin CA, Szczurkowska J, Carriço JN, do Fernandes Nascimento AS, Baho E, Chattopadhyaya B, Cancedda L, Carmant L, Di Cristo G (2018) KCC2 regulates dendritic spine formation in a brain-region specific and BDNF dependent manner. Cereb Cortex 28:4049–4062 Funding information Open Access funding provided by Projekt DEAL. This work was supported by the DFG grant KO 1674/5-1 and ZA 554/5-3 (to M.K. and M.Z.). Compliance with ethical standards Briz V, Zhu G, Wang Y, Liu Y, Avetisyan M, Bi X, Baudry M (2015) Activity-dependent rapid local RhoA synthesis is required for hip- pocampal synaptic plasticity. J Neurosci 35:2269–2282 References Proc Natl Acad Sci U S A 96:13438–13443 Chapleau CA, Carlo ME, Larimore JL, Pozzo-Miller L (2008) The ac- tions of BDNF on dendritic spine density and morphology in organotypic slice cultures depend on the presence of serum in cul- ture media. J Neurosci Methods 169:182–190 Edelmann E, Cepeda-Prado E, Franck M, Lichtenecker P, Brigadski T, Leßmann V (2015) Theta Burst Firing Recruits BDNF Release and Signaling in Postsynaptic CA1 Neurons in Spike-Timing- Dependent LTP. Neuron 86 (4):1041–1054 Chen C, Wang Z, Zhang Z, Liu X, Kang SS, Zhang Y, Ye K (2018) The prodrug of 7,8-dihydroxyflavone development and therapeutic effi- cacy for treating Alzheimer's disease. Proc Natl Acad Sci U S A 115: 578–583 Egan MF, Kojima M, Callicott JH, Goldberg TE, Kolachana BS, Bertolino A, Zaitsev E, Gold B, Goldman D, Dean M et al (2003) The BDNF val66met polymorphism affects activity-dependent se- cretion of BDNF and human memory and hippocampal function. Cell 112:257–269 Chen ZY, Jing D, Bath KG, Ieraci A, Khan T, Siao CJ, Herrera DG, Toth M, Yang C, McEwen BS et al (2006) Genetic variant BDNF (Val66Met) polymorphism alters anxiety-related behavior. Science 314:140–143 El-Husseini AE, Schnell E, Chetkovich DM, Nicoll RA, Bredt DS (2000) PSD-95 involvement in maturation of excitatory synapses. Science 290:1364–1368 Cheng PL, Song AH, Wong YH, Wang S, Zhang X, Poo MM (2011) Self-amplifying autocrine actions of BDNF in axon development. ProcNatlAcadSci USA 108(45):18430–18435 Engert F, Bonhoeffer T (1999) Dendritic spine changes associated with hippocampal long-term synaptic plasticity. Nature 399:66–70 Chhatwal JP, Stanek-Rattiner L, Davis M, Ressler KJ (2006) Amygdala BDNF signaling is required for consolidation but not encoding of extinction. Nat Neurosci 9:870–872 Fass J, Gehler S, Sarmiere P, Letourneau P, Bamburg JR (2004) Regulating filopodial dynamics through actin-depolymerizing fac- tor/cofilin. Anat Sci Int 79:173–183 Choi DC, Gourley SL, Ressler KJ (2012) Prelimbic BDNF and TrkB signaling regulates consolidation of both appetitive and aversive emotional learning. Transl Psychiatry 2:e205 Feldman ML, Dowd C (1975) Loss of dendritic spines in aging cerebral cortex. Anat Embryol 148:279–301 Cirulli F, Berry A, Chiarotti F, Alleva E (2004) Intrahippocampal admin- istration of BDNF in adult rats affects short-term behavioral plastic- ity in the Morris water maze and performance in the elevated plus- maze. References Buhusi M, Etheredge C, Granholm AC, Buhusi CV (2017) Increased hippocampal ProBDNF contributes to memory impairments in aged mice. Front Aging Neurosci 9:284 Aakalu G, Smith WB, Nguyen N, Jiang C, Schuman EM (2001) Dynamic visualization of local protein synthesis in hippocampal neurons. Neuron 30:489–502 Burk K, Ramachandran B, Ahmed S, Hurtado-Zavala JI, Awasthi A, Benito E, Faram R, Ahmad H, Swaminathan A, McIlhinney J, Fischer A, Perestenko P, Dean C (2018) Regulation of dendritic spine morphology in hippocampal neurons by copine-6. Cereb Cortex 28(4):1087–1104 Alonso M, Medina JH, Pozzo-Miller L (2004) ERK1/2 activation is nec- essary for BDNF to increase dendritic spine density in hippocampal CA1 pyramidal neurons. Learning Memory (Cold Spring Harbor, NY) 11:172–178 Cell Tissue Res (2020) 382:185–199 195 Buxbaum AR, Haimovich G, Singer RH (2015) In the right place at the right time: visualizing and understanding mRNA localization. Nat Rev Mol Cell Biol 16:95–109 Dorostkar MM, Zou C, Blazquez-Llorca L, Herms J (2015) Analyzing dendritic spine pathology in Alzheimer's disease: problems and op- portunities. Acta Neuropathol 130:1–19 Cabello CR, Thune JJ, Pakkenberg H, Pakkenberg B (2002) Ageing of substantia nigra in humans: cell loss may be compensated by hyper- trophy. Neuropathol Appl Neurobiol 28:283–291 Dougherty KD, Dreyfus CF, Black IB (2000) Brain-derived neurotrophic factor in astrocytes, oligodendrocytes, and microglia/macrophages after spinal cord injury. Neurobiol Dis 7:574–585 Cane M, Maco B, Knott G, Holtmaat A (2014) The relationship between PSD-95 clustering and spine stability in vivo. J Neurosci 34:2075– 2086 Duman RS, Sanacora G, Krystal JH (2019) Altered connectivity in de- pression: GABA and glutamate neurotransmitter deficits and rever- sal by novel treatments. Neuron 102:75–90 Chakravarthy S, Saiepour MH, Bence M, Perry S, Hartman R, Couey JJ, Mansvelder HD, Levelt CN (2006) Postsynaptic TrkB signaling has distinct roles in spine maintenance in adult visual cortex and hippo- campus. Proc Natl Acad Sci U S A 103:1071–1076 Dumitriu D, Hao J, Hara Y, Kaufmann J, Janssen WG, Lou W, Rapp PR, Morrison JH (2010) Selective changes in thin spine density and morphology in monkey prefrontal cortex correlate with aging- related cognitive impairment. J Neurosci 30:7507–7515 Chao MV, Hempstead BL (1995) p75 and Trk: a two-receptor system. Trends Neurosci 18:321–326 Dunaevsky A, Tashiro A, Majewska A, Mason C, Yuste R (1999) Developmental regulation of spine motility in the mammalian cen- tral nervous system. References Hippocampus 14:802–807 Gao L, Tian M, Zhao HY, Xu QQ, Huang YM, Si QC, Tian Q, Wu QM, Hu XM, Sun LB et al (2016) TrkB activation by 7, 8- dihydroxyflavone increases synapse AMPA subunits and amelio- rates spatial memory deficits in a mouse model of Alzheimer's dis- ease. J Neurochem 136:620–636 Colgan LA, Yasuda R (2014) Plasticity of dendritic spines: subcompartmentalization of signaling. Annu Rev Physiol 76:365– 385 Garcia-Diaz Barriga G, Giralt A, Anglada-Huguet M, Gaja-Capdevila N, Orlandi JG, Soriano J, Canals JM, Alberch J (2017) 7,8- dihydroxyflavone ameliorates cognitive and motor deficits in a Huntington's disease mouse model through specific activation of the PLCgamma1 pathway. Hum Mol Genet 26:3144–3160 Costantini C, Weindruch R, Della Valle G, Puglielli L (2005) A TrkA-to- p75NTR molecular switch activates amyloid beta-peptide genera- tion during aging. Biochem J 391:59–67 Cowansage KK, LeDoux JE, Monfils MH (2010) Brain-derived neuro- trophic factor: a dynamic gatekeeper of neural plasticity. Curr Mol Pharmacol 3:12–29 Gartner A, Staiger V (2002) Neurotrophin secretion from hippocampal neurons evoked by long-term-potentiation-inducing electrical stim- ulation patterns. Proc Natl Acad Sci U S A 99:6386–6391 Croll SD, Ny I, Lindsay RM, Wiegand SJ (1998) Expression of BDNF and trkB as a function of age and cognitive performance. Brain Res 812:200–208 Gehler S, Shaw AE, Sarmiere PD, Bamburg JR, Letourneau PC (2004) Brain-derived neurotrophic factor regulation of retinal growth cone filopodial dynamics is mediated through actin depolymerizing fac- tor/cofilin. J Neurosci 24:10741–10749 Dailey ME, Smith SJ (1996) The dynamics of dendritic structure in de- veloping hippocampal slices. J Neurosci 16:2983–2994 Giza JI, Kim J, Meyer HC, Anastasia A, Dincheva I, Zheng CI, Lopez K, Bains H, Yang J, Bracken C, Liston C, Jing D, Hempstead BL, Lee FS (2018) The BDNF Val66Met prodomain disassembles dendritic spines altering fear extinction circuitry and behavior. Neuron 99(1): 163–178 de Pins B, Cifuentes-Diaz C, Farah AT, Lopez-Molina L, Montalban E, Sancho-Balsells A, Lopez A, Gines S, Delgado-Garcia JM, Alberch J et al (2019) Conditional BDNF delivery from astrocytes rescues memory deficits, spine density, and synaptic properties in the 5xFAD mouse model of Alzheimer disease. J Neurosci 39:2441– 2458 Gomez-Pinilla F, So V, Kesslak JP (2001) Spatial learning induces neurotrophin receptor and synapsin I in the hippocampus. Brain Res 904:13–19 Dickstein DL, Weaver CM, Luebke JI, Hof PR (2013) Dendritic spine changes associated with normal aging. References Neuroscience 251:21–32 Goodman LJ, Valverde J, Lim F, Geschwind MD, Federoff HJ, Geller AI, Hefti F (1996) Regulated release and polarized localization of brain-derived neurotrophic factor in hippocampal neurons. Mol Cell Neurosci 7:222–238 Dieni S, Matsumoto T, Dekkers M, Rauskolb S, Ionescu MS, Deogracias R, Gundelfinger ED, Kojima M, Nestel S, Frotscher M, Barde YA (2012) BDNF and its pro-peptide are stored in presynaptic dense core vesicles in brain neurons. J Cell Biol 196:775–788 196 Cell Tissue Res (2020) 382:185–199 Heinrichs SC, Leite-Morris KA, Guy MD, Goldberg LR, Young AJ, Kaplan GB (2013) Dendritic structural plasticity in the basolateral amygdala after fear conditioning and its extinction in mice. Behav Brain Res 248:80–84 Gooney M, Messaoudi E, Maher FO, Bramham CR, Lynch MA (2004) BDNF-induced LTP in dentate gyrus is impaired with age: analysis of changes in cell signaling events. Neurobiol Aging 25:1323–1331 Gooney M, Shaw K, Kelly A, O'Mara SM, Lynch MA (2002) Long-term potentiation and spatial learning are associated with increased phos- phorylation of TrkB and extracellular signal-regulated kinase (ERK) in the dentate gyrus: evidence for a role for brain-derived neuro- trophic factor. Behav Neurosci 116:455–463 Heldt S, Stanek L, Chhatwal JP, Ressler KJ (2007) Hippocampus-specific deletion of BDNF in adult mice impairs spatial memory and extinc- tion of aversive memories. Mol Psychiatry 12:656–670 Holtmaat A, Caroni P (2016) Functional and structural underpinnings of neuronal assembly formation in learning. Nat Neurosci 19:1553– 1562 Gottmann K, Mittmann T, Lessmann V (2009) BDNF signaling in the formation, maturation and plasticity of glutamatergic and GABAergic synapses. Exp Brain Res 199(3–4):203–234 Holtmaat A, Svoboda K (2009) Experience-dependent structural plastic- ity in the mammalian brain. Nat Rev Neurosci 10(9):647–658 Govindarajan A, Israely I, Huang SY, Tonegawa S (2011) The dendritic branch is the preferred integrative unit for protein synthesis- dependent LTP. Neuron 69:132–146 Horch HW, Katz LC (2002) BDNF release from single cells elicits local dendritic growth in nearby neurons. Nat Neurosci 5:1177–1184 Graham DL, Edwards S, Bachtell RK, DiLeone RJ, Rios M, Self DW (2007) Dynamic BDNF activity in nucleus accumbens with cocaine use increases self-administration and relapse. Nat Neurosci 10: 1029–1037 Horch HW, Kruttgen A, Portbury SD, Katz LC (1999) Destabilization of cortical dendrites and spines by BDNF. Neuron 23:353–364 Hotulainen P, Hoogenraad CC (2010) Actin in dendritic spines: connecting dynamics to function. References J Cell Biol 189:619–629 Graham DL, Krishnan V, Larson EB, Graham A, Edwards S, Bachtell RK, Simmons D, Gent LM, Berton O, Bolanos CA et al (2009) Tropomyosin-related kinase B in the mesolimbic dopamine system: region-specific effects on cocaine reward. Biol Psychiatry 65:696– 701 Hu X, Ballo L, Pietila L, Viesselmann C, Ballweg J, Lumbard D, Stevenson M, Merriam E, Dent EW (2011) BDNF-induced increase of PSD-95 in dendritic spines requires dynamic microtubule inva- sions. J Neurosci 31:15597–15603 Huang YZ, Pan E, Xiong ZQ, McNamara JO (2008) Zinc-mediated transactivation of TrkB potentiates the hippocampal mossy fiber- CA3 pyramid synapse. Neuron 57:546–558 Gray EG (1959) Electron microscopy of synaptic contacts on dendrite spines of the cerebral cortex. Nature 183:1592–1593 Iwakura Y, Nawa H, Sora I, Chao MV (2008) Dopamine D1 receptor- induced signaling through TrkB receptors in striatal neurons. J Biol Chem 283:15799–15806 Griesbeck O, Canossa M, Campana G, Gartner A, Hoener MC, Nawa H, Kolbeck R, Thoenen H (1999) Are there differences between the secretion characteristics of NGF and BDNF? Implications for the modulatory role of neurotrophins in activity-dependent neuronal plasticity. Microsc Res Tech 45:262–275 Jacobs B, Driscoll L, Schall M (1997) Life-span dendritic and spine changes in areas 10 and 18 of human cortex: a quantitative Golgi study. J Comp Neurol 386:661–680 Grunditz A, Holbro N, Tian L, Zuo Y, Oertner TG (2008) Spine neck plasticity controls postsynaptic calcium signals through electrical compartmentalization. J Neurosci 28:13457–13466 Jang SW, Liu X, Yepes M, Shepherd KR, Miller GW, Liu Y, Wilson WD, Xiao G, Blanchi B, Sun YE, Ye K (2010) A selective TrkB agonist with potent neurotrophic activities by 7,8-dihydroxyflavone. Proc Natl Acad Sci U S A 107:2687–2692 Grutzendler J, Kasthuri N, Gan WB (2002) Long-term dendritic spine stability in the adult cortex. Nature 420:812–816 Guo J, Ji Y, Ding Y, Jiang W, Sun Y, Lu B, Nagappan G (2016) BDNF pro-peptide regulates dendritic spines via caspase-3. Cell Death Dis 7:e2264 Ji Y, Lu Y, Yang F, Shen W, Tang TT, Feng L, Duan S, Lu B (2010) Acute and gradual increases in BDNF concentration elicit distinct signaling and functions in neurons. Nat Neurosci 13:302–309 Gupta VK, You Y, Gupta VB, Klistorner A, Graham SL (2013) TrkB receptor signalling: implications in neurodegenerative, psychiatric and proliferative disorders. References Int J Mol Sci 14:10122–10142 Ji Y, Pang PT, Feng L, Lu B (2005) Cyclic AMP controls BDNF-induced TrkB phosphorylation and dendritic spine formation in mature hip- pocampal neurons. Nat Neurosci 8:164–172 Jiao SS, Shen LL, Zhu C, Bu XL, Liu YH, Liu CH, Yao XQ, Zhang LL, Zhou HD, Walker DG et al (2016) Brain-derived neurotrophic factor protects against tau-related neurodegeneration of Alzheimer's dis- ease. Transl Psychiatry 6:e907 Guthrie PB, Segal M, Kater SB (1991) Independent regulation of calcium revealed by imaging dendritic spines. Nature 354:76–80 Hall J, Thomas KL, Everitt BJ (2000) Rapid and selective induction of BDNF expression in the hippocampus during contextual learning. Nat Neurosci 3:533–535 Jones KR, Farinas I, Backus C, Reichardt LF (1994) Targeted disruption of the BDNF gene perturbs brain and sensory neuron development but not motor neuron development. Cell 76:989–999 Harris KM, Jensen FE, Tsao B (1992) Three-dimensional structure of dendritic spines and synapses in rat hippocampus (CA1) at postnatal day 15 and adult ages: implications for the maturation of synaptic physiology and long-term potentiation. J Neurosci 12:2685–2705 Ka M, Kook YH, Liao K, Buch S, Kim WY (2016) Transactivation of TrkB by Sigma-1 receptor mediates cocaine-induced changes in dendritic spine density and morphology in hippocampal and cortical neurons. Cell Death Dis 7:e2414 Harris KM, Stevens JK (1989) Dendritic spines of CA 1 pyramidal cells in the rat hippocampus: serial electron microscopy with reference to their biophysical characteristics. J Neurosci 9:2982–2997 Kang H, Schuman EM (1996) A requirement for local protein synthesis in neurotrophin-induced hippocampal synaptic plasticity. Science 273:1402–1406 Harward SC, Hedrick NG, Hall CE, Parra-Bueno P, Milner TA, Pan E, Laviv T, Hempstead BL, Yasuda R, McNamara JO (2016) Autocrine BDNF-TrkB signalling within a single dendritic spine. Nature 538:99–103 Kang HJ, Schuman EM (1995) Neurotrophin-induced modulation of synaptic transmission in the adult hippocampus. J Physiol Paris 89:11–22 Hayashi-Takagi A, Yagishita S, Nakamura M, Shirai F, Wu YI, Loshbaugh AL, Kuhlman B, Hahn KM, Kasai H (2015) Labelling and optical erasure of synaptic memory traces in the motor cortex. Nature 525:333–338 Kellner Y, Godecke N, Dierkes T, Thieme N, Zagrebelsky M, Korte M (2014) The BDNF effects on dendritic spines of mature hippocam- pal neurons depend on neuronal activity. Front Synaptic Neurosci 6: 5 Hedrick NG, Harward SC, Hall CE, Murakoshi H, McNamara JO, Yasuda R (2016) Rho GTPase complementation underlies BDNF- dependent homo- and heterosynaptic plasticity. References Nature 538:104– 108 Khalin I, Alyautdin R, Wong TW, Gnanou J, Kocherga G, Kreuter J (2016) Brain-derived neurotrophic factor delivered to the brain using poly (lactide-co-glycolide) nanoparticles improves Cell Tissue Res (2020) 382:185–199 197 neurological and cognitive outcome in mice with traumatic brain injury. Drug Deliv 23:3520–3528 neurological and cognitive outcome in mice with traumatic brain injury. Drug Deliv 23:3520–3528 Merkouris S, Barde YA, Binley KE, Allen ND, Stepanov AV, Wu NC, Grande G, Lin CW, Li M, Nan X et al (2018) Fully human agonist antibodies to TrkB using autocrine cell-based selection from a com- binatorial antibody library. Proc Natl Acad Sci U S A 115:E7023– e7032 Kopec CD, Li B, Wei W, Boehm J, Malinow R (2006) Glutamate recep- tor exocytosis and spine enlargement during chemically induced long-term potentiation. J Neurosci 26:2000–2009 Miller S, Yasuda M, Coats JK, Jones Y, Martone ME, Mayford M (2002) Disruption of dendritic translation of CaMKIIalpha impairs stabili- zation of synaptic plasticity and memory consolidation. Neuron 36: 507–519 Koponen E, Voikar V, Riekki R, Saarelainen T, Rauramaa T, Rauvala H, Taira T, Castren E (2004) Transgenic mice overexpressing the full- length neurotrophin receptor trkB exhibit increased activation of the trkB-PLCgamma pathway, reduced anxiety, and facilitated learning. Mol Cell Neurosci 26:166–181 Minichiello L (2009) TrkB signalling pathways in LTP and learning. Nat Rev Neurosci 10:850–860 Korte M, Carroll P, Wolf E, Brem G, Thoenen H, Bonhoeffer T (1995) Hippocampal long-term potentiation is impaired in mice lacking brain-derived neurotrophic factor. Proc Natl Acad Sci U S A 92: 8856–8860 Mizui T, Ishikawa Y, Kumanogoh H, Lume M, Matsumoto T, Hara T, Yamawaki S, Takahashi M, Shiosaka S, Itami C et al (2015) BDNF pro-peptide actions facilitate hippocampal LTD and are altered by the common BDNF polymorphism Val66Met. Proc Natl Acad Sci U S A 112:E3067–E3074 Korte M, Kang H, Bonhoeffer T, Schuman E (1998) A role for BDNF in the late-phase of hippocampal long-term potentiation. Neuropharmacology 37:553–559 Moser M-B, Trommald M, Andersen P (1994) An increase in dendritic spine density on hippocampal CAl pyramidal cells following spatial learning in adult rats suggests the formation of new synapses. References Proc Natl Acad Sci U S A 91:12673–12675 Koshimizu H, Kiyosue K, Hara T, Hazama S, Suzuki S, Uegaki K, Nagappan G, Zaitsev E, Hirokawa T, Tatsu Y et al (2009) Multiple functions of precursor BDNF to CNS neurons: negative regulation of neurite growth, spine formation and cell survival. Mol Brain 2:27 Mostany R, Anstey JE, Crump KL, Maco B, Knott G, Portera-Cailliau C (2013) Altered synaptic dynamics during normal brain aging. J Neurosci 33:4094–4104 Kovalchuk Y, Hanse E, Kafitz KW, Konnerth A (2002) Postsynaptic induction of BDNF-mediated long-term potentiation. Science 295: 1729–1734 Mu JS, Li WP, Yao ZB, Zhou XF (1999) Deprivation of endogenous brain-derived neurotrophic factor results in impairment of spatial learning and memory in adult rats. Brain Res 835:259–265 Lai CS, Franke TF, Gan WB (2012) Opposite effects of fear conditioning and extinction on dendritic spine remodelling. Nature 483:87–91 Muller W, Connor JA (1991) Dendritic spines as individual neuronal compartments for synaptic Ca2+ responses. Nature 354:73–76 Lee FS, Chao MV (2001) Activation of Trk neurotrophin receptors in the absence of neurotrophins. Proc Natl Acad Sci U S A 98:3555–3560 Murakoshi H, Wang H, Yasuda R (2011) Local, persistent activation of Rho GTPases during plasticity of single dendritic spines. Nature 472:100–104 Lee R, Kermani P, Teng KK, Hempstead BL (2001) Regulation of cell survival by secreted proneurotrophins. Science 294:1945–1948 Nagappan G, Zaitsev E, Senatorov VV Jr, Yang J, Hempstead BL, Lu B (2009) Control of extracellular cleavage of ProBDNF by high fre- quency neuronal activity. Proc Natl Acad Sci U S A 106:1267–1272 Lee SJ, Escobedo-Lozoya Y, Szatmari EM, Yasuda R (2009) Activation of CaMKII in single dendritic spines during long-term potentiation. Nature 458:299–304 Nagerl UV, Eberhorn N, Cambridge SB, Bonhoeffer T (2004) Bidirectional activity-dependent morphological plasticity in hippo- campal neurons. Neuron 44:759–767 Leuner B, Shors TJ (2004) New spines, new memories. Mol Neurobiol 29:117–130 Li W, Pozzo-Miller L (2014) BDNF deregulation in Rett syndrome. Neuropharmacology 76(Pt C):737–746 Nakahata Y, Yasuda R (2018) Plasticity of spine structure: local signal- ing, translation and cytoskeletal reorganization. Front Synaptic Neurosci 10:29 Linnarsson S, Björklund A, Ernfors P (1997) Learning deficit in BDNF mutant mice. Eur J Neurosci 9:2581–2587 Nakajo Y, Miyamoto S, Nakano Y, Xue JH, Hori T, Yanamoto H (2008) Genetic increase in brain-derived neurotrophic factor levels en- hances learning and memory. References Brain Res 1241:103–109 Liu X, Chan CB, Jang SW, Pradoldej S, Huang J, He K, Phun LH, France S, Xiao G, Jia Y et al (2010) A synthetic 7,8-dihydroxyflavone derivative promotes neurogenesis and exhibits potent antidepressant effect. J Med Chem 53:8274–8286 Nimchinsky EA, Sabatini BL, Svoboda K (2002) Structure and function of dendritic spines. Annu Rev Physiol 64:313–353 Lu B, Nagappan G, Guan X, Nathan PJ, Wren P (2013) BDNF-based synaptic repair as a disease-modifying strategy for neurodegenera- tive diseases. Nat Rev Neurosci 14:401–416 Orefice LL, Shih CC, Xu H, Waterhouse EG, Xu B (2016) Control of spine maturation and pruning through proBDNF synthesized and released in dendrites. Mol Cell Neurosci 71:66–79 Lu B, Pang PT, Woo NH (2005) The yin and yang of neurotrophin action. Nat Rev Neurosci 6:603–614 Orefice LL, Waterhouse EG, Partridge JG, Lalchandani RR, Vicini S, Xu B (2013) Distinct roles for somatically and dendritically synthesized brain-derived neurotrophic factor in morphogenesis of dendritic spines. J Neurosci 33:11618–11632 Luebke J, Barbas H, Peters A (2010) Effects of normal aging on prefron- tal area 46 in the rhesus monkey. Brain Res Rev 62(2):212–232 Marrs GS, Green SH, Dailey ME (2001) Rapid formation and remodeling of postsynaptic densities in developing dendrites. Nat Neurosci 4: 1006–1013 Pang PT, Teng HK, Zaitsev E, Woo NT, Sakata K, Zhen S, Teng KK, Yung WH, Hempstead BL, Lu B (2004) Cleavage of proBDNF by tPA/plasmin is essential for long-term hippocampal plasticity. Science 306:487–491 Massa SM, Yang T, Xie Y, Shi J, Bilgen M, Joyce JN, Nehama D, Rajadas J, Longo FM (2010) Small molecule BDNF mimetics acti- vate TrkB signaling and prevent neuronal degeneration in rodents. J Clin Invest 120:1774–1785 Park H, Poo MM (2013) Neurotrophin regulation of neural circuit devel- opment and function. Nat Rev Neurosci 14:7–23 Parkhurst CN, Yang G, Ninan I, Savas JN, Yates JR 3rd, Lafaille JJ, Hempstead BL, Littman DR, Gan WB (2013) Microglia promote learning-dependent synapse formation through brain-derived neuro- trophic factor. Cell 155:1596–1609 Matsumoto T, Rauskolb S, Polack M, Klose J, Kolbeck R, Korte M, Barde YA (2008) Biosynthesis and processing of endogenous BDNF: CNS neurons store and secrete BDNF, not pro-BDNF. Nat Neurosci 11:131–133 Penzes P, Johnson RC, Sattler R, Zhang X, Huganir RL, Kambampati V, Mains RE, Eipper BA (2001) The neuronal Rho-GEF Kalirin-7 interacts with PDZ domain-containing proteins and regulates den- dritic morphogenesis. References Neural plastic- ity 2016:8056370 Sudhof TC (2008) Neuroligins and neurexins link synaptic function to cognitive disease. Nature 455:903–911 Rajagopal R, Chao MV (2006) A role for Fyn in Trk receptor transactivation by G-protein-coupled receptor signaling. Mol Cell Neurosci 33:36–46 Takei N, Inamura N, Kawamura M, Namba H, Hara K, Yonezawa K, Nawa H (2004) Brain-derived neurotrophic factor induces mamma- lian target of rapamycin-dependent local activation of translation machinery and protein synthesis in neuronal dendrites. J Neurosci 24:9760–9769 Rajagopal R, Chen ZY, Lee FS, Chao MV (2004) Transactivation of Trk neurotrophin receptors by G-protein-coupled receptor ligands oc- curs on intracellular membranes. J Neurosci 24:6650–6658 Rauskolb S, Zagrebelsky M, Dreznjak A, Deogracias R, Matsumoto T, Wiese S, Erne B, Sendtner M, Schaeren-Wiemers N, Korte M, Barde YA (2010) Global deprivation of brain-derived neurotrophic factor in the CNS reveals an area-specific requirement for dendritic growth. J Neurosci 30:1739–1749 Tanaka J, Horiike Y, Matsuzaki M, Miyazaki T, Ellis-Davies GC, Kasai H (2008) Protein synthesis and neurotrophin-dependent structural plasticity of single dendritic spines. Science 319:1683–1687 Teng KK, Felice S, Kim T, Hempstead BL (2010) Understanding proneurotrophin actions: Recent advances and challenges. Developmental neurobiology 70:350–359 Ren E, Roncace V, Trazzi S, Fuchs C, Medici G, Gennaccaro L, Loi M, Galvani G, Ye K, Rimondini R et al (2019) Functional and structural impairments in the perirhinal cortex of a mouse model of CDKL5 deficiency disorder are rescued by a TrkB agonist. Front Cell Neurosci 13:169 Tiruchinapalli DM, Oleynikov Y, Kelic S, Shenoy SM, Hartley A, Stanton PK, Singer RH, Bassell GJ (2003) Activity-dependent traf- ficking and dynamic localization of zipcode binding protein 1 and beta-actin mRNA in dendrites and spines of hippocampal neurons. J Neurosci 23:3251–3261 Rex CS, Lin CY, Kramar EA, Chen LY, Gall CM, Lynch G (2007) Brain-derived neurotrophic factor promotes long-term potentia- tion-related cytoskeletal changes in adult hippocampus. J Neurosci 27:3017–3029 Todd D, Gowers I, Dowler SJ, Wall MD, McAllister G, Fischer DF, Dijkstra S, Fratantoni SA, van de Bospoort R, Veenman-Koepke J et al (2014) A monoclonal antibody TrkB receptor agonist as a potential therapeutic for Huntington's disease. PLoS One 9:e87923 Robinson TE, Kolb B (1999) Alterations in the morphology of dendrites and dendritic spines in the nucleus accumbens and prefrontal cortex following repeated treatment with amphetamine or cocaine. References Neuron 29:229–242 Matsuzaki M, Honkura N, Ellis-Davies GC, Kasai H (2004) Structural basis of long-term potentiation in single dendritic spines. Nature 429:761–766 Cell Tissue Res (2020) 382:185–199 198 Perovic M, Tesic V, Mladenovic Djordjevic A, Smiljanic K, Loncarevic- Vasiljkovic N, Ruzdijic S, Kanazir S (2013) BDNF transcripts, proBDNF and proNGF, in the cortex and hippocampus throughout the life span of the rat. Age (Dordr) 35:2057–2070 Simmons DA, Belichenko NP, Yang T, Condon C, Monbureau M, Shamloo M, Jing D, Massa SM, Longo FM (2013) A small mole- cule TrkB ligand reduces motor impairment and neuropathology in R6/2 and BACHD mouse models of Huntington's disease. J Neurosci 33:18712–18727 the life span of the rat. Age (Dordr) 35:2057–2070 Peters A, Kaiserman-Abramof IR (1969) The small pyramidal neuron of the rat cerebral cortex. The synapses upon dendritic spines. Z Zellforsch Mikrosk Anat 100(4):487–506 Siuda J, Patalong-Ogiewa M, Zmuda W, Targosz-Gajniak M, Niewiadomska E, Matuszek I, Jedrzejowska-Szypulka H, Lewin- Kowalik J, Rudzinska-Bar M (2017) Cognitive impairment and BDNF serum levels. Neurol Neurochir Pol 51:24–32 Peters J, Dieppa-Perea LM, Melendez LM, Quirk GJ (2010) Induction of fear extinction with hippocampal-infralimbic BDNF. Science 328: 1288–1290 Soliman F, Glatt CE, Bath KG, Levita L, Jones RM, Pattwell SS, Jing D, Tottenham N, Amso D, Somerville LH et al (2010) A genetic variant BDNF polymorphism alters extinction learning in both mouse and human. Science 327:863–866 Petzold A, Psotta L, Brigadski T, Endres T, Lessmann V (2015) Chronic BDNF deficiency leads to an age-dependent impairment in spatial learning. Neurobiol Learn Mem 120:52–60 Puehringer D, Orel N, Luningschror P, Subramanian N, Herrmann T, Chao MV, Sendtner M (2013) EGF transactivation of Trk receptors regulates the migration of newborn cortical neurons. Nat Neurosci 16:407–415 Stagni F, Giacomini A, Guidi S, Emili M, Uguagliati B, Salvalai ME, Bortolotto V, Grilli M, Rimondini R, Bartesaghi R (2017) A flavo- noid agonist of the TrkB receptor for BDNF improves hippocampal neurogenesis and hippocampus-dependent memory in the Ts65Dn mouse model of DS. Exp Neurol 298:79–96 Purpura DP (1974) Dendritic spine "dysgenesis" and mental retardation. Science 186:1126–1128 Stranahan AM, Jiam NT, Spiegel AM, Gallagher M (2012) Aging re- duces total neuron number in the dorsal component of the rodent prefrontal cortex. J Comp Neurol 520:1318–1326 Qiao H, Li MX, Xu C, Chen HB, An SC, Ma XM (2016) Dendritic spines in depression: what we learned from animal models. References Nature 462:920–924 Vigers AJ, Amin DS, Talley-Farnham T, Gorski JA, Xu B, Jones KR (2012) Sustained expression of brain-derived neurotrophic factor is required for maintenance of dendritic spines and normal behavior. Neuroscience 212:1–18 Yang J, Harte-Hargrove LC, Siao CJ, Marinic T, Clarke R, Ma Q, Jing D, Lafrancois JJ, Bath KG, Mark W et al (2014b) proBDNF negatively regulates neuronal remodeling, synaptic transmission, and synaptic plasticity in hippocampus. Cell Rep 7:796–806 von Bohlen und Halbach O, Zacher C, Gass P, Unsicker K (2006) Age- related alterations in hippocampal spines and deficiencies in spatial memory in mice. J Neurosci Res 83:525–531 Yang J, Siao CJ, Nagappan G, Marinic T, Jing D, McGrath K, Chen ZY, Mark W, Tessarollo L, Lee FS et al (2009b) Neuronal release of proBDNF. Nat Neurosci 12:113–115 Wang L, Chang X, She L, Xu D, Huang W, Poo M (2015) Autocrine Action of BDNF on Dendrite Development of Adult-Born Hippocampal Neurons. J Neurosci Res 35(22):8384–8393 Yoshii A, Constantine-Paton M (2007) BDNF induces transport of PSD- 95 to dendrites through PI3K-AKT signaling after NMDA receptor activation. Nat Neurosci 10:702–711 Webster MJ, Herman MM, Kleinman JE, Shannon Weickert C (2006) BDNF and trkB mRNA expression in the hippocampus and tempo- ral cortex during the human lifespan. Gene Expr Patterns 6:941–951 Yuste R, Bonhoeffer T (2001) Morphological changes in dendritic spines associated with long-term synaptic plasticity. Annu Rev Neurosci 24:1071–1089 Wiese S, Jablonka S, Holtmann B, Orel N, Rajagopal R, Chao MV, Sendtner M (2007) Adenosine receptor A2A-R contributes to mo- toneuron survival by transactivating the tyrosine kinase receptor TrkB. Proc Natl Acad Sci U S A 104:17210–17215 Zagrebelsky M, Godecke N, Remus A, Korte M (2018) Cell type-specific effects of BDNF in modulating dendritic architecture of hippocam- pal neurons. Brain Struct Funct 223(8):3689–3709 Winnubst J, Cheyne JE, Niculescu D, Lohmann C (2015) Spontaneous activity drives local synaptic plasticity in vivo. Neuron 87:399–410 Zagrebelsky M, Holz A, Dechant G, Barde YA, Bonhoeffer T, Korte M (2005) The p75 neurotrophin receptor negatively modulates den- drite complexity and spine density in hippocampal neurons. J Neurosci 25:9989–9999 Woo NH, Teng HK, Siao CJ, Chiaruttini C, Pang PT, Milner TA, Hempstead BL, Lu B (2005) Activation of p75NTR by proBDNF facilitates hippocampal long-term depression. Nat Neurosci 8:1069– 1077 Zagrebelsky M, Korte M (2014) Form follows function: BDNF and its involvement in sculpting the function and structure of synapses. References Eur J Neurosci 11:1598–1604 Trachtenberg JT, Chen BE, Knott GW, Feng G, Sanes JR, Welker E, Svoboda K (2002) Long-term in vivo imaging of experience- dependent synaptic plasticity in adult cortex. Nature 420:788–794 Rosas-Vidal LE, Do-Monte FH, Sotres-Bayon F, Quirk GJ (2014) Hippocampal–prefrontal BDNF and memory for fear extinction. Neuropsychopharmacology 39:2161–2169 Tyler WJ, Pozzo-Miller L (2003) Miniature synaptic transmission and BDNF modulate dendritic spine growth and form in rat CA1 neurones. J Physiol 553:497–509 Sala C, Segal M (2014) Dendritic spines: the locus of structural and functional plasticity. Physiol Rev 94:141–188 Tyler WJ, Pozzo-Miller LD (2001) BDNF enhances quantal neurotrans- mitter release and increases the number of docked vesicles at the active zones of hippocampal excitatory synapses. J Neurosci 21: 4249–4258 Schaaf M, Workel JO, Lesscher HM, Vreugdenhil E, Oitzl MS, de Kloet ER (2001) Correlation between hippocampal BDNF mRNA expres- sion and memory performance in senescent rats. Brain Res 915: 227–233 Verhagen M, van der Meij A, van Deurzen PA, Janzing JG, Arias- Vasquez A, Buitelaar JK, Franke B (2010) Meta-analysis of the BDNF Val66Met polymorphism in major depressive disorder: ef- fects of gender and ethnicity. Mol Psychiatry 15:260–271 Shimada A, Mason CA, Morrison ME (1998) TrkB signaling modulates spine density and morphology independent of dendrite structure in cultured neonatal Purkinje cells. J Neurosci 18:8559–8570 Vetere G, Restivo L, Cole CJ, Ross PJ, Ammassari-Teule M, Josselyn SA, Frankland PW (2011a) Spine growth in the anterior cingulate cortex is necessary for the consolidation of contextual fear memory. Proc Natl Acad Sci U S A 108:8456–8460 Shimada H, Makizako H, Doi T, Yoshida D, Tsutsumimoto K, Anan Y, Uemura K, Lee S, Park H, Suzuki T (2014) A large, cross-sectional observational study of serum BDNF, cognitive function, and mild cognitive impairment in the elderly. Front Aging Neurosci 6:69 Vetere G, Restivo L, Novembre G, Aceti M, Lumaca M, Ammassari- Teule M (2011b) Extinction partially reverts structural changes as- sociated with remote fear memory. Learn Memory (Cold Spring Harbor, NY) 18:554–557 Silhol M, Arancibia S, Maurice T, Tapia-Arancibia L (2007) Spatial memory training modifies the expression of brain-derived neuro- trophic factor tyrosine kinase receptors in young and aged rats. Neuroscience 146:962–973 Cell Tissue Res (2020) 382:185–199 199 Yang G, Pan F, Gan WB (2009a) Stably maintained dendritic spines are associated with lifelong memories. References Neuropharmacology 76(Pt C):628–638 Woodruff-Pak DS, Foy MR, Akopian GG, Lee KH, Zach J, Nguyen KP, Comalli DM, Kennard JA, Agelan A, Thompson RF (2010) Differential effects and rates of normal aging in cerebellum and hippocampus. Proc Natl Acad Sci U S A 107:1624–1629 Zeng Y, Liu Y, Wu M, Liu J, Hu Q (2012a) Activation of TrkB by 7,8- dihydroxyflavone prevents fear memory defects and facilitates amygdalar synaptic plasticity in aging. J Alzheimers Dis 31:765– 778 Xu B, Sun A, He Y, Qian F, Xi S, Long D, Chen Y (2018) Loss of thin spines and small synapses contributes to defective hippocampal function in aged mice. Neurobiol Aging 71:91–104 Zeng Y, Lv F, Li L, Yu H, Dong M, Fu Q (2012b) 7,8-dihydroxyflavone rescues spatial memory and synaptic plasticity in cognitively im- paired aged rats. J Neurochem 122:800–811 Xu T, Yu X, Perlik AJ, Tobin WF, Zweig JA, Tennant K, Jones T, Zuo Y (2009) Rapid formation and selective stabilization of synapses for enduring motor memories. Nature 462:915–919 Zhou Q, Homma KJ, Poo MM (2004) Shrinkage of dendritic spines associated with long-term depression of hippocampal synapses. Neuron 44:749–757 Xu X, Miller EC, Pozzo-Miller L (2014) Dendritic spine dysgenesis in Rett syndrome. Front Neuroanat 8:97 Zuccato C, Cattaneo E (2009) Brain-derived neurotrophic factor in neu- rodegenerative diseases. Nat Rev Neurol 5:311–322 yCajal SR (1891). Sur la structure de l'écorce cérébrale de quelques mammifères (Typ. de Joseph Van In) Yang G, Lai CS, Cichon J, Ma L, Li W, Gan WB (2014a) Sleep promotes branch-specific formation of dendritic spines after learning. Science 344:1173–1178 Publisher’s note Springer Nature remains neutral with regard to jurisdic- tional claims in published maps and institutional affiliations.
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Some properties of (α, β)-fuzzy positive implicative ideals in BCK-algebras
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Muhammad Zulfiqar1,2 1Department of Mathematics, Quaid-i-Azam University, Islamabad-45320, Pakistan. 2Department of Mathematics, GC University Lahore, Katchery Road, Lahore-54000, Pakistan. E-mail: mzulfiqarshafi@hotmail.com ABSTRACT. In this paper, by using the concept of belongingness (∈) and quasi-coincidence (q) between fuzzy points and fuzzy sets, we introduce (α, β)-fuzzy positive implicative ideals in BCK-algebras where α, β are any of {∈, q, ∈ ˅ q, ∈ ˄ q} with α ≠ ∈ ˄ q. d C l b b l i ( ) i i id ( ) ( β) f i i i li i id l ( ) Keywords: BCK-algebra; belongingness (∈), quasi-coincidence (q), (α, β)-fuzzy positive implicative ideals, (∈, ∈)- fuzzy positive implicative ideal. Propriedades de (α, β)-fuzzy positivo ideal implicativo em álgebras BCK RESUMO. O presente estudo utilizou o conceito de pertença (∈) e de quase coincidência (q) entre pontos fuzzy e conjuntos fuzzy para apresentar o (α, β)-fuzzy positivo ideal implicativo em álgebras BCK, onde α, β são quaisquer {∈, q, ∈ ˅ q, ∈ ˄ q} com α ≠ ∈ ˄ q. Palavras-chave: álgebra BCK, pertence a, quase coincidência (q), o (α, β)-fuzzy positivo ideal implicativo, ∈ fuz positivo ideal implicativo. Introduction fuzzy point with a fuzzy set, plays a vital role to generate some different types of fuzzy subgroups, called (α, β)-fuzzy subgroups, introduced by (BHAKAT; DAS, 1996). In particular, (∈, ∈ ∨ q)- fuzzy subgroup is an important and useful generalization of the Rosenfeld’s fuzzy subgroups (ROSENFELD, 1971). (BHAKAT, 1999, 2000) studied (∈ ∨ q)-level subsets, (∈, ∈ ∨ q)-fuzzy normal, quasi-normal and maximal subgroups. In (JUN, 2009), introduced the concept of (∈, ∈ ∨ q)- fuzzy subalgebras in BCK/BCI-algebras and investigated some related results. (ZHAN et al., 2009) studied (∈, ∈ ∨ q)-fuzzy ideals in BCI- algebras. (JUN, 2004, 2005) introduced the concept of (α, β)-fuzzy subalgebras (ideals) of BCK/BCI- algebras. Recently, (SHABIR et al., 2012) studied characterizations of hemirings by ) , ( q ∨ ∈ ∈ -fuzzy ideals. The concept of a fuzzy set, which was published by (ZADEH, 1965) was applied by many researchers to generalize some of the basic concepts of algebra. The fuzzy algebraic structures play a vital role in Mathematics with wide applications in many other branches such as theoretical physics, computer sciences, control engineering, information sciences, coding theory, topological spaces, logic (ZADEH, 2005), set theory, real analysis, measure theory etc. In (Xi, 1991) applied fuzzy subsets in BCK- algebras and studied fuzzy BCK-algebras. He defined the concept of fuzzy ideal and fuzzy positive implicative ideal and he got some interesting results. The theory of BCK-algebras was initiated by (IMAI; IS’EKI, 1966). For the general development of BCK-algebras, the ideal theory and its fuzzification play an important role. The concept of implicative ideals in a BCK-algebra was first introduced by (IS’EKI, 1975) and then the fuzzification of implicative ideals is studied in (XI, 1991). In (JUN et al., 1994) developed the fuzzy positive implicative ideals in BCK-algebras. In this paper, we define (α, β)-fuzzy positive implicative ideals in BCK-algebras where α, β are any of {∈, q, ∈ ˅ q, ∈ ˄ q} with α ≠ ∈ ˄ q, by using the concept of belongingness and quasi-coincidence between fuzzy points and fuzzy sets. http://www.uem.br/acta ISSN printed: 1806-2563 ISSN on-line: 1807-8664 Acta Scientiarum Doi: 10.4025/actascitechnol.v35i2.1 http://www.uem.br/acta ISSN printed: 1806-2563 ISSN on-line: 1807-8664 Acta Scientiarum Doi: 10.4025/actascitechnol.v35i2.1 http://w ISSN p ISSN o Acta Scientiarum Doi: 10 http://www.uem.br/acta ISSN printed: 1806-2563 ISSN on-line: 1807-8664 Doi: 10.4025/actascitechnol.v35i2.15898 http://www.uem.br/acta ISSN printed: 1806-2563 ISSN on-line: 1807-8664 Doi: 10.4025/actascitechnol.v35i2.15898 x ∗ y ∈ S, ∀ x, y ∈ S. A fuzzy subset λ of a universe X is a function from X to the unit closed interval [0, 1], that is λ : X → [0, 1]. For a fuzzy set λ of a BCK-algebra X and t ∈ (0, 1], the crisp set A fuzzy subset λ of a universe X is a function from X to the unit closed interval [0, 1], that is λ : X If we put z = 0, then it follows that I is an ideal. Thus, every positive implicative ideal is an ideal. [ ] → [0, 1]. For a fuzzy set λ of a BCK-algebra X and t ∈ (0, 1], the crisp set Definition 3.2. (JUN, 1994) A fuzzy set λ of a BCK-algebra X is called a fuzzy positive implicative ideal of X if it satisfies (F1) and (F3), where Definition 3.2. (JUN, 1994) A fuzzy set λ of a BCK-algebra X is called a fuzzy positive implicative ideal of X if it satisfies (F1) and (F3), where λt = {x ∈ X | λ(x) ≥ t} ( ) ( ) (F1) λ(0) ≥ λ(x), (F3) λ(x ∗ z) ≥ λ((x ∗ y) ∗ z) ˄ λ(y ∗ z), ∀ x, y, z ∈ X. ( ) ( ) (F1) λ(0) ≥ λ(x), (F3) λ(x ∗ z) ≥ λ((x ∗ y) ∗ z) ˄ λ(y ∗ z), ∀ x, y, z ∈ X. is called the level subset of λ (DAS, 1981). is called the level subset of λ (DAS, 1981). A fuzzy set λ of a BCK-algebra X (JUN, 2005) having the form Clearly z = 0 gives λ is a fuzzy ideal of X. A fuzzy set λ of a BCK-algebra X (JUN, 2005) having the form Example 3.3. Let X = {0, a, b, c} in which ∗ is given by Table 1. λ(y) =    ≠ = ∈ , , 0 ]1 ,0 ( x y if x y if t ∗ 0 a b c 0 0 0 0 0 a a 0 0 a b b a 0 b c c c c 0 is said to be a fuzzy point with support x and value t and is denoted by xt. is said to be a fuzzy point with support x and value t and is denoted by xt. Then X is a BCK-algebra (MENG, 1994). λ(x ∗ y) ≥ λ(x) ˄ λ(y), ∀ x, y ∈ X g g (1) (x ∗ y) ∗ z = (x ∗ z) ∗ y (2) (x ∗ z) ∗ (y ∗ z) ≤ x ∗ y (3) (x ∗ y) ∗ (x ∗ z) ≤ z ∗ y (4) x ∗ 0 = x (5) x ∗ (x ∗ (x ∗ y)) = x ∗ y ∀ x, y, z ∈ X. (1) (x ∗ y) ∗ z = (x ∗ z) ∗ y (2) (x ∗ z) ∗ (y ∗ z) ≤ x ∗ y (3) (x ∗ y) ∗ (x ∗ z) ≤ z ∗ y (1) (x ∗ y) ∗ z = (x ∗ z) ∗ y (2) (x ∗ z) ∗ (y ∗ z) ≤ x ∗ y (3) (x ∗ y) ∗ (x ∗ z) ≤ z ∗ y (4) x ∗ 0 = x (5) x ∗ (x ∗ (x ∗ y)) = x ∗ y ∀x y z ∈X Theorem 2.2. (JUN, 2005) Let λ be a fuzzy set in X. Then λ is a fuzzy subalgebra of X if and only if λt = {x ∈ X | λ(x) ≥ t} is a subalgebra of X for all t ∈ (0, 1], for our convenience, the empty set φ is regarded as a subalgebra of X. ∀ x, y, z ∈ X. A nonempty subset I of a BCK-algebra X is called an ideal (IS’EKI; TANAKA, 1976) of X if it satisfies (I1) and (I2), where Preliminaries (MURALI, 2004) defined the concept of belongingness of a fuzzy point to a fuzzy subset under a natural equivalence on a fuzzy subset. (PU; LIU, 1980), give the idea of quasi-coincidence of a Throughout this paper, X always means a BCK- algebra unless otherwise specified. We also include some basic aspects that are necessary for this paper. Maringá, v. 35, n. 2, p. 371-377, Apr.-June, 2013 Acta Scientiarum. Technology 372 372 Zulfiqar Zulfiqar By a BCK-algebra (IS’EKI; TANAKA, 1978), we mean an algebra (X, ∗ , 0) of type (2, 0) satisfying the axioms: To say that xt ∈ ˅ qλ (xt ∈ ˄ qλ) means that xt ∈ λ or xtqλ (xt ∈ λ and xtqλ). For all t1, t2 ∈ [0, 1], min{t1, t2} and max{t1, t2} will be denoted by t1 ˄ t2 and t1 ˅ t2, respectively. (BCK-I) ((x ∗ y) ∗ (x ∗ z)) ∗ (z ∗ y) = 0 (BCK-II) (x ∗ (x ∗ y)) ∗ y = 0 (BCK-III) x ∗ x = 0 (BCK-IV) 0 ∗ x = 0 (BCK-V) x ∗ y = 0 and y ∗ x = 0 imply x = y ∀ x, y, z ∈ X. A fuzzy set λ of a BCK-algebra X is called a fuzzy ideal (MENG, 1997) of X if it satisfies (F1) and (F2), where ( ) (F1) λ(0) ≥ λ(x), (F1) λ(0) ≥ λ(x), (F1) λ(0) ≥ λ(x), (F2) λ(x) ≥ λ(x ∗ y) ˄ λ(y), ∀ x, y ∈ X. (F2) λ(x) ≥ λ(x ∗ y) ˄ λ(y), ∀ x, y, z ∈ X. We can define a partial order ‘‘≤’’ on X by x ≤ y if and only if x ∗ y = 0. ∀ x, y ∈ X. Let X be a BCK-algebra. A fuzzy set λ in X is said to be a fuzzy subalgebra (XI, 1991) of X if it satisfies Let X be a BCK-algebra. A fuzzy set λ in X is said to be a fuzzy subalgebra (XI, 1991) of X if it satisfies Proposition 2.1. (MENG, 1997) In any BCK- algebra X, the following are true: (1) 3. Fuzzy positive implicative ideals in BCK-algebras (I1) 0 ∈ I, In this section we obtain some properties of fuzzy positive implicative ideals in BCK-algebras and investigate their properties. In this section we obtain some properties of fuzzy positive implicative ideals in BCK-algebras and investigate their properties. (I2) x ∗ y ∈ I and y ∈ I imply x ∈ I, ∀ X (I2) x ∗ y ∈ I and y ∈ I imply x ∈ I, ∀ X (I2) x ∗ y ∈ I and y ∈ I imply x ∈ I, ∀ X ∀ x, y ∈ X. Definition 3.1. (MENG, 1994) A nonempty subset I of a BCK-algebra X is called a positive implicative ideal if it satisfies (I1) and (I3), where A nonempty subset S of a BCK-algebra X is called a subalgebra (MENG, 1994) of X if it satisfies (I1) 0 ∈ I, (I3) (x ∗ y) ∗ z ∈ I and y ∗ z ∈ I imply x ∗ z ∈ I, ∀ x, y, z ∈ X. If we put z = 0, then it follows that I is an ideal. Thus, every positive implicative ideal is an ideal. (I1) 0 ∈ I, (I3) (x ∗ y) ∗ z ∈ I and y ∗ z ∈ I imply x ∗ z ∈ I, ∀ x, y, z ∈ X. x ∗ y ∈ S, ∀ x, y ∈ S. Acta Scientiarum. Technology is a positive implicative ideal of X. is a positive implicative ideal of X. λ(0) ˅ 0.5 ≥ λ(x) ≥ t > 0.5 Theorem 3.6. If λ is a fuzzy positive implicative ideal of a BCK-algebra X, then P = {x ∈ X | λ(x) = λ(0)} P = {x ∈ X | λ(x) = λ(0)} and so is a positive implicative ideal of X. Proof. Straightforward. is a positive implicative ideal of X. λ(0) ≥ t λ(0) ≥ t p p Proof. Straightforward. Thus 0 ∈ λt. Let x, y, z ∈ X be such that (x ∗ y) ∗ z ∈ λt, y ∗ z ∈ λt Thus 0 ∈ λt. Let x, y, z ∈ X be such that (x ∗ y) ∗ z ∈ λt, y ∗ z ∈ λt x ∗ y ∈ S, ∀ x, y ∈ S. Let s0, s1, s2 ∈ [0, 1] be such that s0 > s1> s2. We define a map λ : X → [0, 1] by λ(0) = s0, λ(a) = λ(b) = s1 and λ(c) = s2. Simple calculations show that λ is a fuzzy ideal of X. But it is not a fuzzy positive implicative ideal of X, because For a fuzzy point xt and a fuzzy set λ in a set X, (PU; LIU, 1980), gave meaning to the symbol xtαλ, where α ∈ {∈, q, ∈ ˅ q, ∈ ˄ q}. A fuzzy point xt is said to belong to (resp., be quasi- coincident with) a fuzzy set λ, written as xt ∈ λ (resp., xtqλ) if λ(x) ≥ t (resp., λ(x) + t > 1). Maringá, v. 35, n. 2, p. 371-377, Apr.-June, 2013 Acta Scientiarum. Technology Some properties of (α, β)-fuzzy positive implicative ideals in BCK-algebras 373 Put x = b, y = a, z = a in (F3) we get λ(x ∗ z) ≥ λ((x ∗ y) ∗ z) ˄ λ(y ∗ z) λ(b ∗ a) ≥ λ((b ∗ a) ∗ a) ˄ λ(a ∗ a) λ(a) ≥ λ(a ∗ a) ˄ λ(0) s1 ≥ λ(0) ˄ λ(0) ≥ s0 ˄ s0 ≥ s0 s1 ≥/ s0. (a) ∀ x ∈ X, λ(0) ˅ 0.5 ≥ λ(x) (b) ∀ x, y, z ∈ X, λ(x ∗ z) ˅ 0.5 ≥ λ((x ∗ y) ∗ z) ˄ λ(y ∗ z). Proof. Suppose that λt is a positive implicative ideal of X for all t ∈ (0.5, 1]. If there is a ∈ X such that the condition (a) is not valid, that is, there exist a ∈ X such that λ(0) ˅ 0 5 ˂ λ(a) Proof. Suppose that λt is a positive implicative ideal of X for all t ∈ (0.5, 1]. If there is a ∈ X such that the condition (a) is not valid, that is, there exist a ∈ X such that λ(0) ˅ 0.5 ˂ λ(a) λ(0) ˅ 0.5 ˂ λ(a) The Theorem 3.4 is a simple consequence of the transfer principle described in (KONDO; DUDEK, 2005). then λ(a) ∈ (0.5, 1] and a ∈ λλ(a). But λ(0) ˂ λ(a) implies 0 ∉ λλ(a), a contradiction. Hence (a) is valid. Suppose that then λ(a) ∈ (0.5, 1] and a ∈ λλ(a). But λ(0) ˂ λ(a) implies 0 ∉ λλ(a), a contradiction. Hence (a) is valid. Suppose that ) Theorem 3.4. A fuzzy set λ in BCK-algebras X is a fuzzy positive implicative ideal of X if and only if for every t ∈ (0, 1], λt = {x ∈ X | λ(x) ≥ t} is a positive implicative ideal of X, where λt ≠ φ . λ(a ∗ c) ˅ 0.5 ˂ λ((a ∗ b) ∗ c) ˄ λ(b ∗ c) = v for some a, b, c ∈ X. Then v ∈ (0.5, 1] and (a ∗ b) ∗ c ∈ λv, b ∗ c ∈ λv. But a ∗ c ∉ λv since λ(a ∗ c) ˂ v. This is a contradiction, and therefore (b) is valid. Conversely, suppose that λ satisfies conditions (a) and (b). Let t ∈ (0.5, 1]. For any x ∈ λt, we have Corollary 3.5. A fuzzy set λ of a BCK-algebra X is a fuzzy positive implicative ideal if and only if for any x0 ∈ X, 0 x P = {x ∈ X | λ(x) ≥ λ(x0)} 0 x P = {x ∈ X | λ(x) ≥ λ(x0)} is a positive implicative ideal of X. 4. (α, β)-fuzzy positive implicative ideals in BCK-algebras In what follows let α and β denote any one of ∈, q, ∈ ˅ q, ∈ ˄ q unless otherwise specified. To say that xtα λ means that xtαλ does not hold. Then Proposition 4.1. (JUN, 2005) For any fuzzy set λ in X, the condition (1) is equivalent to the following condition λ(x ∗ z) ˅ 0.5 ≥ λ((x ∗ y) ∗ z) ˄ λ(y ∗ z) ≥ t ˄ t ≥ t > 0.5 λ(x ∗ z) ˅ 0.5 ≥ λ((x ∗ y) ∗ z) ˄ λ(y ∗ z) ≥ t ˄ t ≥ t > 0.5 1tx , 2ty ∈ λ  2 1 ) ( t t y x ∧ ∗ ∈ λ (2) 1tx , 2ty ∈ λ  2 1 ) ( t t y x ∧ ∗ ∈ λ (2) for all x, y ∈ X and t1, t2 ∈ (0, 1]. (2) for all x, y ∈ X and t1, t2 ∈ (0, 1]. and thus A fuzzy set λ in a BCK-algebra X is said to be an (α, β)-fuzzy subalgebra of X, where α ≠ ∈ ˄ q, if it satisfies the following condition (JUN, 2005): λ(x ∗ z) ≥ t, 1tx αλ, 2ty αλ  2 1 ) ( t t y x ∧ ∗ βλ (3) (3) Hence is λt is a positive implicative ideal of X. Definition 4.3. A fuzzy set λ of a BCK-algebra X is called an (α, β)-fuzzy positive implicative ideal of X, where α ≠ ∈ ˄ q, if it satisfies for all t1, t2 ∈ (0, 1]. Acta Scientiarum. Technology Maringá, v. 35, n. 2, p. 371-377, Apr.-June, 2013 ∀ t, t1, t2 ∈ (0, 1]. y (g) λ(0) ≥ λ(x) ˄ 0.5, (g) λ(0) ≥ λ(x) ˄ 0.5, (h) λ(x ∗ z) ≥ λ((x ∗ y) ∗ z) ˄ λ(y ∗ z) ˄ 0.5, (g) λ(0) ≥ λ(x) ˄ 0.5, (h) λ(x ∗ z) ≥ λ((x ∗ y) ∗ z) ˄ λ(y ∗ z) ˄ 0.5, Theorem 4.4. For any fuzzy set λ in BCK- algebra X, the condition (F1) and (F3) are equivalent to the conditions ∀ x, y, z ∈ X. Proof. Assume that λ is an (∈, ∈ ∨ q)-fuzzy positive implicative ideal of X. Let x ∈ X and suppose that λ(x) ˂ 0.5. If λ(0) ˂ λ(x), then λ(0) ˂ t ˂ λ(x) for some t ∈ (0, 0.5) and xt ∈ λ and 0t ∈ λ. Since λ(0) + t ˂ t, we have 0t q λ. It follows that 0t (e) xt ∈ λ  0t ∈ λ, (f) 1 ) ) (( t z y x ∗ ∗ ∈ λ, 2 ) ( t z y ∗ ∈ λ 2 1 ) ( t t z x ∧ ∗ ∈ λ, 2 1 ) ( t t z x ∧ ∗ ∈ λ, ∀ t, t1, t2 ∈ (0, 1]. q ∨ ∈ λ, a contradiction. Hence λ(0) ≥ λ(x). Now if λ(0) ≥ 0.5, then x0.5 ∈ λ and thus 00.5 ∈ ˅ Proof. Suppose that (F1) is valid and let x ∈ X and t ∈ (0, 1] be such that xt ∈ λ. Then λ(0) ≥ λ(x) ≥ t, and so 0 ∈ λt. Assume that (e) is true. Since q λ. Thus λ(0) ≥ 0.5. Otherwise λ(0) + 0.5 ˂ 0.5 + 0.5 = 1, a contradiction. Consequently, q y λ(0) ≥ λ(x) ˄ 0.5, ∀ x ∈ X. Let x, y, z ∈ X and suppose that λ((x ∗ y) ∗ z) ˄ λ(y ∗ z) ˂ 0.5. Then λ(x ∗ z) ≥ λ((x ∗ y) ∗ z) ˄ λ(y ∗ z). If not, then λ(x ∗ z) ˂ t ˂ λ((x ∗ y) ∗ z) ˄ λ(y ∗ q y λ(0) ≥ λ(x) ˄ 0.5, ∀ x ∈ X. Let x, y, z ∈ X and suppose that λ((x ∗ y) ∗ z) ˄ λ(y ∗ z) ˂ 0.5. Then λ(x ∗ z) ≥ λ((x ∗ y) ∗ z) ˄ λ(y ∗ z). xλ(x) ∈ λ, ∀x ∈ X, If λ(x) ˂ 0.5, then λ(0) ≥ λ(x) ˄ 0.5 = λ(x) ≥ t a contradiction Hence we know that λ(x) ≥0 5 and Then for all t1, t2 ∈ (0, 1]. Theorem 4.2. Let λ be a fuzzy set of a BCK- algebra X . Then λt is a positive implicative ideal of X for all t ∈ (0.5, 1] if and only if it satisfies Maringá, v. 35, n. 2, p. 371-377, Apr.-June, 2013 Maringá, v. 35, n. 2, p. 371-377, Apr.-June, 2013 Acta Scientiarum. Technology Acta Scientiarum. Technology Zulfiqar Zulfiqar 374 (c) xtαλ  0tβλ, Proof. Straightforward. Proof. Straightforward. Theorem 4.6. A fuzzy set λ in a BCK-algebra X is an (∈, ∈ ∨ q)-fuzzy positive implicative ideal of X if and only if it satisfies condition 2 1 ) ( t t z x ∧ ∗ βλ, xλ(x) ∈ λ, ∀x ∈ X, it follows from (e) that 0λ(x) ∈ λ so that it follows from (e) that 0λ(x) ∈ λ so that λ(0) ≥ λ(x), ∀ x ∈ X. λ(0) ≥ λ(x), ∀ x ∈ X. Suppose that the condition (F3) holds. Let x, y, z ∈ X and t1, t2 ∈ (0, 1] be such that z) for some t ∈ (0, 0.5). It follows that z) for some t ∈ (0, 0.5). It follows that ((x ∗ y) ∗ z)t ∈ λ, (y ∗ z)t ∈ λ but (x ∗ z)t ˄ t = (x ∗ ) ( , ) ((x ∗ y) ∗ z)t ∈ λ, (y ∗ z)t ∈ λ but (x ∗ z)t ˄ t = (x ∗ z)t q ∨ ∈ λ, 1 ) ) (( t z y x ∗ ∗ ∈ λ, 2 ) ( t z y ∗ ∈ λ. 1 ) ) (( t z y x ∗ ∗ ∈ λ, 2 ) ( t z y ∗ ∈ λ. a contradiction. Hence λ(x ∗ z) ≥ λ((x ∗ y) ∗ z) ˄ λ(y ∗ z). Whenever λ((x ∗ y) ∗ z) ˄ λ(y ∗ z) ˂ 0.5. If λ((x ∗ y) ∗ z) ˄ λ(y ∗ z) ≥ 0.5, then ((x ∗ y) ∗ z)0.5 ∈ λ and (y ∗ z)0.5 ∈ λ. This implies that (x ∗ z)0.5 = (x ∗ z)0.5 ˄ 0.5 ∈ ˅ q λ. Therefore λ(0) ≥ 0.5 because if λ(x) ˂ 0.5, then λ(x) + 0.5 ˂ 0.5 + 0.5 = 1, a contradiction. Hence a contradiction. Hence λ(x ∗ z) ≥ λ((x ∗ y) ∗ z) ˄ λ(y ∗ z). Whenever λ((x ∗ y) ∗ z) ˄ λ(y ∗ z) ˂ 0.5. If λ((x ∗ y) ∗ z) ˄ λ(y ∗ z) ≥ 0.5, then ((x ∗ y) ∗ z)0.5 ∈ λ and (y ∗ z)0.5 ∈ λ. This implies that (x ∗ z)0.5 = (x ∗ z)0.5 ˄ 0.5 ∈ ˅ q λ. Therefore λ(0) ≥ 0.5 because if λ(x) ˂ 0.5, then λ(x) + 0.5 ˂ 0.5 + 0.5 = 1, a contradiction. Hence λ(x ∗ z) ≥ λ((x ∗ y) ∗ z) ˄ λ(y ∗ z) ˄ 0.5. Conversely, assume that λ satisfies condition (g) and (h). Let x ∈ X and t ∈ (0, 1] be such that xt ∈ λ. Then λ(x) ≥ t. Suppose that λ(0) ˂ t. ∀ t, t1, t2 ∈ (0, 1]. If not, then λ(x ∗ z) ˂ t ˂ λ((x ∗ y) ∗ z) ˄ λ(y ∗ xλ(x) ∈ λ, ∀x ∈ X, xλ(x) ∈ λ, ∀x ∈ X, Taking Hence λ is an (∈, ∈ ∨ q)-fuzzy positive implicative ideal of X. Hence λ is an (∈, ∈ ∨ q)-fuzzy positive implicative ideal of X. t = 2 1 (λ(a ∗ c) + (λ((a ∗ b) ∗ c) ˄ λ(b ∗ c) ˄ 0.5)) Theorem 4.7. Let λ be an (∈, ∈ ∨ q)-fuzzy positive implicative ideal of X such that λ(x) ˂ 0.5 for all x ∈ X. Then λ is an (∈, ∈)-fuzzy positive implicative ideal of X. Proof. Straightforward. Proof. Straightforward. Theorem 4.8. A fuzzy set λ in BCK-algebra X is an (∈, ∈ ∨ q)-fuzzy positive implicative ideal of X if and only if the set λt = {x ∈ X | λ(x) ≥ t} is a positive implicative ideal of X for all t ∈ (0, 0.5]. λ(x ∗ z) ≥ λ((x ∗ y) ∗ z) ˄ λ(y ∗ z) ˄ 0.5 It follows from Theorem 4.6 that λ is an (∈, ∈ ∨ q)-fuzzy positive implicative ideal of X. Proof. Suppose λ is an (∈, ∈ ∨ q)-fuzzy positive implicative ideal of X and t ∈ (0, 0.5]. Using Theorem 4.6(g), we have Proof. Suppose λ is an (∈, ∈ ∨ q)-fuzzy positive implicative ideal of X and t ∈ (0, 0.5]. Using Theorem 4.6(g), we have Theorem 4.9. Let P be an positive implicative ideal of X and let λ be a fuzzy set in BCK-algebra X such that λ(0) ≥ λ(x) ˄ 0.5 for any x ∈ λt It follows that λ(0) ≥ λ(x) ˄ 0.5 for any x ∈ λt It follows that λ(0) ≥ t ˄ 0.5 = t So that 0 ∈ λt. Let x, y, z ∈ X be such that (x ∗ y) ∗ z ∈ λt and y ∗ z ∈ λt. Then λ((x ∗ y) ∗ z) ≥ t and λ(y ∗ z) ≥ t. Using Theorem 4.6(h), we get λ(x ∗ z) ≥ λ((x ∗ y) ∗ z) ˄ λ(y ∗ z) ˄ 0.5 ≥ t ˄ t ˄ 0.5 ≥ t ˄ 0.5 (i) λ(x) = 0 for all x ∈ X \ P, (j) λ(x) ≥ 0.5 for all x ∈ P. (j) λ(x) ≥ 0.5 for all x ∈ P. Then λ is a (q, ∈ ∨ q)-fuzzy positive implicative ideal of X. Proof. Let x ∈ X and t ∈ (0, 1] be such that xtqλ. Then λ(x) + t > 1 and so x ∈ P. Thus λ(x) ≥ 0.5 and t > 0.5. Since 0 ∈ P, it follows that Proof. Let x ∈ X and t ∈ (0, 1] be such that xtqλ. Then λ(x) + t > 1 and so x ∈ P. Thus λ(x) ≥ 0.5 and t > 0.5. Since 0 ∈ P, it follows that λ(0) + t > 0.5 + 0.5 = 1 So 0t ∈ ∨ q λ. Let x, y, z ∈ X and t1, t2 ∈ (0, 1] be such that and so x ∗ z ∈ λt . Hence λt is a positive implicative ideal of X. 1 ) ) (( t z y x ∗ ∗ ∈ ∨ q λ and 2t) z y ( ∗ ∈ ∨ q λ. Maringá, v. 35, n. 2, p. 371-377, Apr.-June, 2013 Maringá, v. 35, n. Some properties of (α, β)-fuzzy positive implicative ideals in BCK-algebras Some properties of (α, β)-fuzzy positive implicative ideals in BCK-algebras 375 λ(0) + t > 2 λ(0) ≥ 2 (λ(x) ˄ 0.5) = 1 Thus 0t ∈ ˅ q λ. Let x, y, z ∈ X and t1, t2 ∈ (0, 1] be such that 1 ) ) (( t z y x ∗ ∗ ∈ λ and 2 ) ( t z y ∗ ∈ λ. Then λ((x ∗ y) ∗ z) ≥ t1 and λ(y ∗ z) ≥ t2. Suppose λ(x ∗ z) ˂ t1 ˄ t2. If λ((x ∗ y) ∗ z) ˄ λ(y ∗ z) ˂ 0.5, then λ(x ∗ z) ≥ λ((x ∗ y) ∗ z) ˄ λ(y ∗ z) ˄ 0.5 = λ((x ∗ y) ∗ z) ˄ λ(y ∗ z) ≥ t1 ˄ t2. This is a contradiction, and so λ((x ∗ y) ∗ z) ˄ λ(y ∗ z) ≥ 0.5. It follows that λ(x ∗ z) + t1 ˄ t2 > 2 λ(x ∗ z) ≥ 2 (λ((x ∗ y) ∗ z) ˄ λ(y ∗ z) ˄ Conversely, assume that λ is a fuzzy set in X such that is a positive implicative ideal of X. If there is a ∈ X such that λ(0) ˂ t ˂ λ(a) ˄ 0.5 for some t ∈ (0, 0.5], and so 0 ∉ λt. This is a contradiction. Hence λ(0) ≥ λ(x) ˄ 0.5, ∀ x ∈ X. λ(0) ≥ λ(x) ˄ 0.5, ∀ x ∈ X. Assume that there exist a, b, c ∈ X such that λ(a ∗ c) ˂ λ((a ∗ b) ∗ c) ˄ λ(b ∗ c) ˄ 0.5 0.5) So Acta Scientiarum. Technology Then λ((x ∗ y) ∗ z) ≥ t1 and λ(y ∗ z) ≥ t2. λ((x ∗ y) ∗ z) ≥ t1 and λ(y ∗ z) ≥ t2. It follows from (F3) that λ(x ∗ z) ≥ λ((x ∗ y) ∗ z) ˄ λ(y ∗ z) ≥ t1 ˄ t2 λ((x ∗ y) ∗ z) ≥ t1 and λ(y ∗ z) ≥ t2. It follows from (F3) that λ(x ∗ z) ≥ λ((x ∗ y) ∗ z) ˄ λ(y ∗ z) ≥ t1 ˄ t2 λ((x ∗ y) ∗ z) ˄ λ(y ∗ z) ≥ 0.5, λ((x ∗ y) ∗ z) ˄ λ(y ∗ z) ≥ 0.5, then λ(x ∗ z) ≥ λ((x ∗ y) ∗ z) ˄ λ(y ∗ z) ≥ t1 ˄ t2 So 2 1 ) ( t t z x ∧ ∗ ∈ λ. Finally suppose that (f) is valid. Note that for every x, y, z ∈ X, λ(x) + 0.5 ˂ 0.5 + 0.5 = 1, λ(x) + 0.5 ˂ 0.5 + 0.5 1 ((x ∗ y) ∗ z)λ((x ∗ y) ∗ z)∈ λ and (y ∗ z)λ(y ∗ z)∈ λ = 1, a contradiction. Hence Hence Conversely, assume that λ satisfies condition (g) and (h). Let x ∈ X and t ∈ (0, 1] be such that xt ∈ λ. Then λ(x) ≥ t. Suppose that λ(0) ˂ t. If λ(x) ˂ 0.5, then (x ∗ z)λ((x ∗ y) ∗ z) ˄ λ(y ∗ z)∈ λ by (f), (x ∗ z)λ((x ∗ y) ∗ z) ˄ λ(y ∗ z)∈ λ by (f), and thus λ(0) ≥ λ(x) ˄ 0.5 = λ(x) ≥ t λ(0) ≥ λ(x) ˄ 0.5 = λ(x) ≥ t λ(x ∗ z) ≥ λ((x ∗ y) ∗ z) ˄ λ(y ∗ z). Theorem 4.5. Every (∈ ∨ q, ∈ ∨ q)-fuzzy positive implicative ideal is an (∈, ∈ ∨ q)-fuzzy positive implicative ideal. a contradiction. Hence we know that λ(x) ≥ 0.5 and Maringá, v. 35, n. 2, p. 371-377, Apr.-June, 2013 Acta Scientiarum. Technology Some properties of (α, β)-fuzzy positive implicative ideals in BCK-algebras Then λ((x ∗ y) ∗ z) + t1 > 1 and λ(y ∗ z) + t2 > 1. (3) To consider these results to some possible applications in computer sciences and information systems in the future. Thus (x ∗ y) ∗ z ∈ P and y ∗ z ∈ P. Acknowledgements The author is very grateful to referees for their valuable comments and suggestions for improving this paper. For, (x ∗ y) ∗ z ∉ P (resp. y ∗ z ∉ P), then λ((x ∗ y) ∗ z) = 0 (resp. λ(y ∗ z) = 0) Consequently IS’EKI, K.; TANAKA, S. An introduction to the theory of BCK-algebra. Mathematica Japonica, v. 23, n. 1, p. 1-26, 1978. 2 1 ) ( t t z x ∧ ∗ ∈ ∨q λ. JUN, Y. B. On (α, β)-fuzzy ideals of BCK/BCI-algebras. Scientiae Mathematicae Japonicae, v. 60, n. 3, p. 613-617, 2004. Hence λ is a (q, ∈ ∨ q)-fuzzy positive implicative ideal of X. JUN, Y. B. On (α, β)-fuzzy subalgebras of BCK/BCI- algebras. Bulletin of the Korean Mathematical Society, v. 42, n. 4, p. 703-711, 2005. Acta Scientiarum. Technology λ(x ∗ z) ≥ λ((x ∗ y) ∗ z) ˄ λ(y ∗ z) ˄ 0.5 2, p. 371-377, Apr.-June, 2013 Acta Scientiarum. Technology 376 Zulfiqar (2) To apply this notion to some other algebraic structures; References and so t1 > 1 (resp. t2 > 1), a contradiction. Since P is a positive implicative ideal of X, it follows that x ∗ z ∈ P so that λ(x ∗ z) ≥ 0.5. If t1 ≤ 0.5 or t2 ≤ 0.5, then BHAKAT, S. K. ( q ∨ ∈ )-level subsets. Fuzzy Sets and Systems, v. 103, n. 3, p. 529-533, 1999. BHAKAT, S. K. (∈, q ∨ ∈ )-fuzzy normal, quasinormal BHAKAT, S. K. (∈, q ∨ ∈ )-fuzzy normal, quasinormal and maximal subgroups. Fuzzy Sets and Systems, v. 112, n. 2, p. 299-312, 2000. and maximal subgroups. Fuzzy Sets and Systems, v. 112, n. 2, p. 299-312, 2000. λ(x ∗ z) ≥ 0.5 ≥ t1 ˄ t2 Hence 2 1 ) ( t t z x ∧ ∗ ∈ λ. If t1 > 0.5 and t2 > 0.5, then λ(x ∗ z) + t1 ˄ t2 > 0.5 + 0.5 = 1 λ(x ∗ z) ≥ 0.5 ≥ t1 ˄ t2 BHAKAT, S. K.; DAS, P. (∈, q ∨ ∈ )-fuzzy subgroups. Fuzzy Sets and Systems, v. 80, n. 3, p. 359-368, 1996. DAS, P. S. Fuzzy groups and level subgroups. Journal of Mathematical Analysis and Applications, v. 84, n. 1, p. 264-269, 1981. λ(x ∗ z) + t1 ˄ t2 > 0.5 + 0.5 = 1 IMAI, Y.; IS´EKI, K. On axiom systems of propositional calculi XIV. Proceedings of the Japan Academy, v. 42, n. 1, p. 19-22, 1966. and so IS’EKI, K. On ideals in BCK-algebras. Mathematics Seminar Notes Kobe University, v. 3, n. 1, p. 1-12, 1975. 2 1 ) ( t t z x ∧ ∗ q λ. 2 1 ) ( t t z x ∧ ∗ q λ. IS’EKI, K.; TANAKA, S. Ideal theory of BCK-algebras. Mathematica Japonica, v. 21, n. 4, p. 351-366, 1976. Consequently License information: This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Maringá, v. 35, n. 2, p. 371-377, Apr.-June, 2013 Conclusion In the study of fuzzy algebraic system, we see that the fuzzy positive implicative ideals with special properties always play a central role. JUN, Y. B. Generalizations of (∈, q ∨ ∈ )-fuzzy subalgebras in BCK/BCI-algebras. Computers and Mathematics with Applications, v. 58, n. 7, p. 1383-1390, 2009. In this paper, we define (α, β)-fuzzy positive implicative ideals in BCK-algebras and give several properties of fuzzy positive implicative ideals in BCK-algebras in terms of these notions. JUN, Y. B.; HONG, S. M.; MENG, J.; XIN, X. L. Characterizations of fuzzy positive implicative ideals in BCK-algebras. Mathematica Japonica, v. 40, n. 3, p. 503-507, 1994. We believe that the research along this direction can be continued, and in fact, some results in this paper have already constituted a foundation for further investigation concerning the further development of fuzzy BCK-algebras and their applications in other branches of algebra. In the future study of fuzzy BCK-algebras, perhaps the following topics are worth to be considered: KONDO, M.; DUDEK, W. A. On the transfer principle in fuzzy theory. Mathware and Soft Computing, v. 12, n. 1, p. 41-55, 2005. MENG, J.; JUN, Y. B. BCK-algebras. Seoul: Kyung Moon Sa Co., 1994. MENG, J.; JUN, Y. B.; KIM, H. S. Fuzzy implicative ideals of BCK-algebras. Fuzzy Sets and Systems, v. 89, n. 2, p. 243-248, 1997. (1) To characterize other classes of BCK- algebras by using this notion; MURALI, V. Fuzzy points of equivalent fuzzy subsets. Information Sciences, v. 158, n. 1, p. 277-288, 2004. Maringá, v. 35, n. 2, p. 371-377, Apr.-June, 2013 Maringá, v. 35, n. 2, p. 371-377, Apr.-June, 2013 Acta Scientiarum. Technology Some properties of (α, β)-fuzzy positive implicative ideals in BCK-algebras 377 Some properties of (α, β)-fuzzy positive implicative ideals in BCK-algebras PU, P. M.; LIU, Y. M. Fuzzy topology I: neighourhood structure of a fuzzy point and Moore-Smith convergence. ZADEH, L. A. Toward a generalized theory of uncertainty (GTU)-an outline. Information Sciences, v. 172, n. 1-2, p. 1-40, 2005. ZHAN, J.; JUN, Y. B.; DAVVAZ, B. On (∈, ∈ ∨ q)-fuzzy ideals of BCI-algebras Iranian Journal of Fuzzy Systems, v. 6, n. 1, p. 81-94, 2009. ZADEH, L. A. Toward a generalized theory of uncertainty (GTU)-an outline. Information Sciences, v. 172, n. 1-2, p. 1-40, 2005. y g Journal of Mathematical Analysis and Applications, v. 76, n. 2, p. 571-599, 1980. ZHAN, J.; JUN, Y. B.; DAVVAZ, B. On (∈, ∈ ∨ q)-fuzzy ideals of BCI-algebras Iranian Journal of Fuzzy Systems, v. 6, n. 1, p. 81-94, 2009. ROSENFELD, A. Fuzzy groups. Journal of Mathematical Analysis and Applications, v. 35, n. 3, p. 512-517, 1971. SHABIR, M.; NAWAZ, Y.; MAHMOOD, T. Characterizations of hemirings by ) , ( q ∨ ∈ ∈ -fuzzy ideals, Neural Computing and Applications, v. 21, Suppl., p. S93-S103, 2012. Received on January 31, 2012. Accepted on June 5, 2012. XI, O. G. Fuzzy BCK-algebra. Mathematica Japonica, v. 36, n. 5, p. 935-942, 1991. ZADEH, L. A. Fuzzy sets. Information and Control, v. 8, n. 3, p. 338-353, 1965. Acta Scientiarum. Technology
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Toxicological Profile of Nanostructured Bone Substitute Based on Hydroxyapatite and Poly(lactide-co-glycolide) after Subchronic Oral Exposure of Rats
Nanomaterials
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Received: 28 March 2020; Accepted: 17 April 2020; Published: 9 May 2020 Abstract: Novel three-dimensional (3D) nanohydroxyapatite-PLGA scaffolds with high porosity was developed to better mimic mineral component and microstructure of natural bone. To perform a final assessment of this nanomaterial as a potential bone substitute, its toxicological profile was particularly investigated. Therefore, we performed a comet assay on human monocytes for in vitro genotoxicity investigation, and the systemic subchronic toxicity investigation on rats being per oral feed with exactly administrated extract quantities of the nano calcium hydroxyapatite covered with tiny layers of PLGA (ALBO-OS) for 120 days. Histological and stereological parameters of the liver, kidney, and spleen tissue were analyzed. Comet assay revealed low genotoxic potential, while histological analysis and stereological investigation revealed no significant changes in exposed animals when compared to controls, although the volume density of blood sinusoids and connective tissue, as well as numerical density and number of mitosis were slightly increased. Additionally, despite the significantly increased average number of the Ki67 and slightly increased number of CD68 positive cells in the presence of ALBO-OS, immunoreactive cells proliferation was almost neglected. Blood analyses showed that all of the blood parameters in rats fed with extract nanomaterial are comparable with corresponding parameters of no feed rats, taken as blind probe. This study contributes to the toxicological profiling of ALBO-OS scaffold for potential future application in bone tissue engineering. Keywords: hydroxyapatite; bone substitute; genotoxicity; subchronic toxicity; biocompatibility nanomaterials nanomaterials nanomaterials nanomaterials Toxicological Profile of Nanostructured Bone Substitute Based on Hydroxyapatite and Poly(lactide-co-glycolide) after Subchronic Oral Exposure of Rats Smiljana Paraš 1, Dijana Triši´c 2 , Olivera Mitrovi´c Ajti´c 3, Bogomir Proki´c 4, Damjana Drobne 5 , Slavoljub Živkovi´c 2 and Vukoman Jokanovi´c 6,7,* Smiljana Paraš 1, Dijana Triši´c 2 , Olivera Mitrovi´c Ajti´c 3, Bogomir Proki´c 4, Damjana Drobne 5 , Slavoljub Živkovi´c 2 and Vukoman Jokanovi´c 6,7,* 1 Faculty of Science and Mathematics, University of Banja Luka, 78000 Banja Luka, Republic of Srpska, Bosnia and Herzegovina; sm 2 Faculty of Dental Medicine, University of Belgrade, 11000 Belgrade, Serbia; dijana.trisic@stomf.bg.ac.rs (D.T.); s.zivkovic@stomf.bg.ac.rs (S.Ž.) 3 Department for Molecular Oncology, Institute for Medical Research, University of Belgrade, 11000 Belgrade, Serbia; oliveram@imi.bg.ac.rs g g 4 School of Veterinary Medicine, University of Belgrade, 11000 Belgrade, Serbia; bogomirprokic@vet.bg.a y, y j j , j j , ; j j 6 Department of Atomics Physics, Vinˇca Institute of Nuclear Sciences, University of Belgrade, 11000 Belgrade, Serbia 7 ALBOS d.o.o., 11000 Belgrade, Serbia * Correspondence: vukoman@vinca.rs Received: 28 March 2020; Accepted: 17 April 2020; Published: 9 May 2020 www.mdpi.com/journal/nanomaterials Nanomaterials 2020, 10, 918; doi:10.3390/nano10050918 1. Introduction Increased number of skeletal system disorders, due to the increase of the human lifespan, imposes a need for a new and more efficient bone healing procedure, since conventional treatments with auto- and allografts have many drawbacks, such as infections, pain, long-term recovery, and rejection by a Nanomaterials 2020, 10, 918; doi:10.3390/nano10050918 www.mdpi.com/journal/nanomaterials 2 of 21 Nanomaterials 2020, 10, 918 host immune system [1,2]. Tissue engineering, as an interdisciplinary approach integrating biology, medicine, and engineering, offers an alternative by developing synthetic bone substitutes, which are able to provide bone repair and regeneration, even at the large scale bone defects [1,3,4]. Biocompatible porous three-dimensional (3D) scaffolds that mimic the natural bone structure have given the most promising results due to their biostimulative effect on cells proliferation and neovascularization [1–5]. Besides, these scaffolds have to mimic bone in all biological aspects and disintegrate at a rate that is similar to the new bone production to achieve the most efficient healing treatment [6,7]. Among the wide range of biomaterials used for the synthesis of bone scaffolds [8], hydroxyapatite [HAP, Ca10(PO4)6(OH)2] is one of the most widely utilized, since it possesses structural and chemical similarity to natural bone. It is biocompatible, bioresorbable, and bioactive, and it enables excellent cell adhesiveness [4,9–11]. The main drawbacks of HAP represent its lower rate of degradation in comparison to natural bone, and its mechanical strength, which mostly depends on the microstructure. To overcome it, HAP was modified due to available nanotechnology and widely combined with synthetic polymers. These composite scaffolds exhibited better mechanical properties and bioactivity, in comparison to ceramics or polymer alone [9,10,12]. Bearing all that in mind, novel porous bone substitute that is based on nanostructured HAP covered with thin polymeric film of poly(lactide-co-glycolide) (PLGA) has been synthesized recently and showed to present excellent biocompatibility through many in vitro and in vivo investigations, as well as numerous superior characteristics in comparison to commercially available product [13–15]. However, after being implanted in the tissue, the degradation process of the material in local tissue occurs, and dissolved products obtain to systematic circulation. The chronical presence of scaffolds’ products in circulation could lead to toxicity, and this aspect of nanostructured HAP has been poorly investigated so far. 1. Introduction Systemicsubchronictoxicitystudies, usuallyconductedinrodentsbyrepeatedadministrationoftested compounds for more than 90 days (defined by the international standard ISO 10993: Biological evaluation of medical devices), are necessary before clinical application of bone substitute, especially at the large scale bone defects. A combined investigation of genotoxicity in vitro and systemic chronic toxicity could provide new insights in safety evaluation and potential long-term adverse effects of investigated materials and its leachable products [16]. The aim of this study was to provide toxicological profile based on in vitro genotoxicity and in vivo systemic subchronic toxicity. A range of endpoints was evaluated, including biochemical analyses, and histological and stereological measurements on liver, kidney, and spleen tissues, after 120 days of oral administration. This study contributes valuable understanding of the novel three-dimensional (3D) nanohydroxyapatite-PLGA scaffold (ALBO-OS) interaction on the systemic level to organism under subchronic exposure scenario. 2.1. Test Material A novel composite scaffold that was based on calcium hydroxyapatite and poly(lactide-co-glycolide) (PLGA), named ALBO-OS, was used for in vivo toxicity study. The detailed procedure of material’s synthesis and characterization is explained in our previous investigations [13–15], and a summary is given in this paper. Synthesis and Characterization 2.3. Systemic Subchronic Toxicity Investigation The Ethical Committee of the Faculty of Veterinary Medicine, University of Belgrade and Ministry of Agriculture and Environment Protection of the Republic of Serbia approved the experimental protocol (decision number 01-831/2), and realized in accordance with recommendations of European Good Laboratory Practice (86/609 EEC) related to protection and use of laboratory animals. Synthesis and Characterization Briefly, HAP powder was hydrothermally synthesized from an approximately stoichiometric mixture of calcium hydroxide (Ca(OH)2) and (NH4)2HPO4 (p.a. Merck KGaA, Darmstadt, Germany). The obtained hydroxyapatite powder was further used for the production of HAP granules. Further, ceramic slurry was made by mixing HAP granules and starch with water, and then poured over 3 of 21 Nanomaterials 2020, 10, 918 polyurethane foam with the required pore size distribution and dried at room temperature. Finally, it was heated in an oven at 600 ◦C and sintered at 1200 ◦C for 4 h. The obtained porous HAP compact was further disintegrated into 300 µm–1 mm granules. Finally, PLGA (Durect Corporation, Birmingham, AL, USA, 50:50, M = 45,000–70,000) thin film was deposited onto the surface of HA granules to obtain final product. 2.2. Genotoxicity Investigations In Vitro 2.2.1. Cell Exposure and Viability Evaluation THP-1 cells were seeded in 12-well plates in concentration 15 × 104 cells per well. The next day cells were exposed to ALBO-OS extract. Extract contained maximal concentrations of Ca2+ ions, which exact value, was previously exactly ordered by ICP. The concentration corresponded to concentration of released Ca2+ ions in saturated solution obtained after immersion of 0.05, 5, 10, and 50 mg/mL ALBO OS in 10 mL distilled water with previously adjusted pH at 7.37, during 120 h. For negative control, the cells were not treated with material, while cells exposed to methyl methanesulfonate (MMS) solution (40 µM) were used as a positive control. The cells were exposed to various treatments for 1 h, after which they were centrifuged (200× g, 5 min.) and resuspended in Dulbecco’s phosphate-buffered saline (DPBS, Sigma-Aldrich, Saint Louis, MO, USA). Prior to alkaline comet assay, Trypan blue exclusion assay [17] was used for cell viability test. Cells’ viability evaluation was performed by microscopic observation (AXIO Vert.A1; Carl Zeiss, Jena, Germany) at 400× magnification (with minimum 200 cells/sample). 2.2.2. Alkaline Comet Assay The comet assay (single cell gel electrophoresis assay) was used to detect possible single- strand DNA breaks, double-strand DNA breaks, alkali labile site, and incomplete excision repair sites [18]. The microscopic slides were pre-coated with 0.5% normal-melting point (NMP) agarose. Cells were mixed with 1% low-melting point (LMP) agarose and then applied onto slides. After agarose solidification, the additional layer of 1% LMP agarose was applied, and followed by the slides immersion for 60 min. in alkaline lysis solution (1 M NaCl, 0.1 M EDTA, 10 mM Tris-HCl, 0.1% N-lauroylsarcosine, 1% Triton X-100, 30 mM NaOH). The slides were further gently washed in distilled water, and immersed for 20 min. in cold electrophoresis buffer (0.3 M NaOH, 1 mM EDTA, pH > 13), followed by the electrophoresis (30 min. at 0.7 V/cm) in the same buffer. At the end of electrophoresis, the slides were neutralized with 0.4 M Tris-HCl (pH 7.5) and stained with ethidium bromide (10 µg/mL). An epifluorescent microscope (Axio Imager.Z1; Carl Zeiss, Jena, Germany) at 400× magnification was used for slides analysis. CometAssay software (developed by Prof. Igor Kononenko research group, Laboratory for Cognitive Modeling, Faculty of Computer and Information Science, University of Ljubljana) was used to analyze 50 randomly selected comets per slide. As the DNA damage parameter, the percentage of DNA presence in the comet’s tail (tail DNA (%)) was used. The measurements were done in three independent repeats. 2.4. Histological and Stereological Analysis The animals were sacrificed by intravenous administration of thiopentone sodium solution (170 mg/kg). The rats’ livers, kidneys, and spleens were removed, immersed in Buoin’s fixative solution for 24 h, and, for better absorption, further cut into smaller pieces and then immersed into fresh Buoin’s solution. Subsequently, all of the dissected organs were prepared for the light microscopy using the standard tissue preparation procedure. Tissue was embedded in paraffin. Tissue sections of 5 µm thickness were cut using rotary microtome (Leica rotary Microtome RM 2165, Leica Microsystems, Wetzlar, Germany). Every fifth section was used for the analysis in order not to repeat the analyzed structures. Tissue was stained with hematoxylin-eosin (H&E) (Merck KGaA, Darmstadt, Germany). The qualitative analysis of the microscopic slides was performed while using the light microscope (Leica DM8000 M with MEGA VIEW camera and software system for digital image transfer, Wetzlar, Germany). For quantitative, stereological analysis, micrographs were acquired in the RGB layout and converted to binary format. Measurements were made using a stereo-universal test system according to Cavalier’s principle, while using 16.0 point-counting system (MBF software system Application Suite 3.0.0, MBF Bioscience, Williston, VT, USA), with P2 spacing grid at the maximum 400× magnification. Stained tissue sections of liver, kidney, and spleen were used to measure the number and volume density (Vv) of epithelial cells. Volume density was calculated through the following formula: Vv = Pf/Pt (mm0), where Pf represents the number of the desired phase on the test system (epithelial cells) and Pt represents the total number of points of the test system [19]. The following principle was used for the determination of the number of matches on the test system: all of the endothelial cells’ nuclei were marked as reference point, while the cells surfaces were calculated according to the principles: (i) all cells that have a clearly visible contour and nucleus, (ii) the cells contour do not touch the test system frame, and (iii) the cells contour is clearly visible without a visible nucleus. The numerical density (Nv) of all epithelial cells was calculated based on the cell count (Q) in the volume of analyzed tissues (Vo). 2.3.1. Experimental Protocol The investigation included 21 Wistar rats (Ratus norvegicus), at the age 8–12 weeks, and body weight 240–260 g. Animals were placed in individual cages. During the experiment, the animals were kept under following conditions: temperature 23 ± 3 ◦C, air humidity 55 ± 5%, 8–12 air changes/h, and artificial lighting at intervals of 12 h day/night. The animals had free access to food and water. The animal health status was monitored daily during the experiment. 4 of 21 Nanomaterials 2020, 10, 918 Extracts that were obtained after the highest concentration of ALBO OS, obtained during 5 days immersion of material (100 mg/mL) in distilled water (in accordance with the standard ISO 10993-12:2012—Biological evaluation of medical devices—Part 12: Sample preparation and reference materials) was used for per oral rats feeding. After seven days of adaptation period, the animals were randomly divided into experimental (n = 12) and control group (n = 9). To the animals in the experimental group, 1 mL of ALBO-OS extract was per oral fed for 120 days, every day at the same time, while, for the control group, distilled water was used. During the experiment, control of the health status, behavior, changes in skin and haircut, food and water consummation, urination, and defecation, was performed and recorded daily. The body weight of animals was checked after the adaptation period, and afterward three times through the experiment. 2.3.2. Blood Analysis At the end of the experiment, the blood samples were taken from lateral tail vein for hematological (leukocytes, thrombocytes, hemoglobin) and biochemical analyses (alanine aminotransaminase (ALT), aspartate aminotransaminase (AST), urea, creatinine, bilirubin, serum protein, glucose, and alkaline phosphatase (ALP)). 2.4. Histological and Stereological Analysis The volume of analyzed tissue was evaluated as the product of the number of counted frames (ΣPi), the space of counted frame (a = 25,002), and the height factor (h) (the histological section), as presented in the following formula [20]: Nv = Q Vo= Q Pn i=1 Pi × a × h (mm−3) (1) (1) MBF software system was used to measure the surface and volume of epithelial cells and nuclei, by the thickness of their diameters. Measuring the surface of epithelial cells and nuclei enabled the measurement of the cells, cytoplasm, and nuclei volumes. The ratio between the cells’ nuclei and 5 of 21 Nanomaterials 2020, 10, 918 cytoplasm volumes was used to determine the nucleocytoplasmic ratio (NCO). The mitotic index was determined as the ratio between the number of cells in mitosis and the total number of cells in 10 visible optical fields per slide, with maximum 200× magnification. 3.1. Genotoxicity Results The results of Trypan blue exclusion assay indicated that none of the nanoHAP-PLGA concentrations (0.05, 5, 10, and 50 mg/mL) was cytotoxic to THP-1 cells after 1 h exposure. In all tested samples, cell viability was over 90%. The results of the comet assay showed that none of the used ALBO-OS concentrations was genotoxic to THP-1 cells (Figure 1). There is no comet tail for any of material’s concentration, which means that there is no damaged DNK (broken fragments) that would migrate from the “head” during the electrophoresis, like in the case of positive control, as it can be seen in Figure 1B. 3.2. Systemic Subchronic Toxicity Results 3.2. Systemic Subchronic Toxicity Results 3.2.1. Main Clinical Symptoms and Observations 2.5. Immunohistochemical Analysis For the immunohistochemical analysis, the paraffin tissue sections of rat liver, spleen, and kidney were analyzed cut at 5 µm, and the slides were heated for 60 min. at 56 ◦C. Prior to the antigen retrieval step, the sections were deparaffinized and rehydrated through the series of xylenes and alcohols. To block endogenous peroxidase activity, tissue sections were treated with 3% H2O2 solution in PBS. Tor epitope retrieval, tissue sections were heated in microwave oven for 21 min., at 680 W, in 10 mmol/L citrate buffer, pH 6.0. The tissue sections were incubated with appropriate antibodies (against CD68 (RTU-CD68, Leica, LOT 6000698, Wetzlar, Germany) and Ki67 protein (Monoclonal Mouse Anti-human Ki67 Antigen, Clone Ki-S5, Sigma-Aldrich, Saint Louis, MO, USA (dilution 1:100)) over night, at +4 ◦C, in the humid chamber. Streptavidin-biotin technique was used for immunostaining (LSAB+/HRP Kit, Peroxidase Labeling, K0690, DAKO Cytomation, Glostrup, Denmark). Immunoreactivity complex was visualized with DAKO Liquid DAB+ Substrate/Chromogen System (Dako, CA, USA, Code No. K3468) and then counterstained with Mayer’s hematoxylin (Merck, KGaA, Darmstadt, Germany). As negative control served the tissue sections with omitted primary antibody. For positive control, the tissue sections that were known to express CD68 and Ki67 were used. CD68 and Ki67 positive cells in tissues were analyzed by a light microscope (Olympus AX70, Hamburg, Germany) with 40× magnification. In all of analyzed sample of tissue, five hot spots were selected for image analysis in ImageJ (The National Institutes of Health, Bethesda, MD, USA). Ki67 and CD68 expressions were calculated by determining the positive Ki67/CD68 areas (brown-colored cells) in microscopic fields (40× magnification), based on the threshold [21]. Median values of CD68 and Ki67 immunostaining were calculated for each individual tissue sample and then used for further analysis. 2.6. Statistical Analyses All of the values were presented as mean ± standard deviation. Group comparisons were performed while using parametric (two-way ANOVA, one-way ANOVA followed by Dunnett’s test and t-test) or nonparametric tests (Kruskal–Wallis and Mann–Whitney U-test), depending on data distribution, with significance set at p < 0.05. Statistical software SPSS 20.0 (IBM corp., Armonk, NY, USA) was used for data processing. 3.2.1. Main Clinical Symptoms and Observations During the course of the exposure, no adverse effects that were related to the behavior of the tested animals were observed, as investigated at a daily level. No changes in skin and haircut, as well as changes in food and water consummation, or urinating and defecation, have been reported. Body mass 6 of 21 6 of 22 Nanomaterials 2020, 10, 918 Nanomaterials 2020 10 x FO was measured four times during the experiment, and in all animals it was mildly and consistently increased through the observation period (Figure 2). mass was measured four times during the experiment, and in all animals it was mildly and consistently increased through the observation period (Figure 2). mass was measured four times during the experiment, and in all animals it was mildly and consistently increased through the observation period (Figure 2) Figure 1. (A). Comet assay results: a) first repeat, b) second repeat, c) third repeat. Asterisks denote the significant differences with respect to the untreated control cells (***p < 0.001; one-way ANOVA, Dunnett's test). (B). Images of comets for: a) negative control, different concentration of material’s extract: b) 0.05 mg/ml, c) 5 mg/ml, d) 10 mg/ml, e) 50 mg/ml and f) positive control. Figure 1. (A) Comet assay results: (a) first repeat, (b) second repeat, (c) third repeat. Asterisks denote the significant differences with respect to the untreated control cells (*** p < 0.001; one-way ANOVA, Dunnett’s test). (B) Images of comets for: (a) negative control, different concentration of material’s extract: (b) 0.05 mg/mL, (c) 5 mg/mL, (d) 10 mg/mL, (e) 50 mg/mL and (f) positive control. Figure 1. (A). Comet assay results: a) first repeat, b) second repeat, c) third repeat. Asterisks denote the significant differences with respect to the untreated control cells (***p < 0.001; one-way ANOVA, Dunnett's test). (B). Images of comets for: a) negative control, different concentration of material’s extract: b) 0.05 mg/ml, c) 5 mg/ml, d) 10 mg/ml, e) 50 mg/ml and f) positive control. Figure 1. (A). Comet assay results: a) first repeat, b) second repeat, c) third repeat. Asterisks denote the significant differences with respect to the untreated control cells (***p < 0.001; one-way ANOVA, Dunnett's test). (B). Images of comets for: a) negative control, different concentration of material’s extract: b) 0.05 mg/ml, c) 5 mg/ml, d) 10 mg/ml, e) 50 mg/ml and f) positive control. Figure 1. 3.2.2. Results of Blood Analysis The hemoglobin and thrombocytes values were fairly similar in the experimental and control group. Significantly higher leukocyte values were found in the control group, p < 0.001 (Table 1). The hemoglobin and thrombocytes values were fairly similar in the experimental and control group. Significantly higher leukocyte values were found in the control group, p < 0.001 (Table 1). Table 1. Results of blood analysis; values are shown as mean ± SD (*** p < 0.001; t-test). ALBO-OS Control Leucocytes 4.12 ± 1.94 6.83 ± 0.77 *** Hemoglobin 144 ± 8.26 140.8 ± 6.76 Thrombocytes 566.56 ± 269.54 713.20 ± 181.58 Table 1. Results of blood analysis; values are shown as mean ± SD (*** p < 0.001; t-test). ALBO-OS Control Leucocytes 4.12 ± 1.94 6.83 ± 0.77 *** Hemoglobin 144 ± 8.26 140.8 ± 6.76 Thrombocytes 566.56 ± 269.54 713.20 ± 181.58 In Table 2, the results of the analysis of the biochemical parameters are presented. No significant differences were found for urea, creatinine, and bilirubin values. The ALT level and glucose were slightly higher in the experimental group when compared to the control, while the AST level was higher in the control versus the experimental group, all without significant differences. The alkaline phosphatase values were higher in the experimental group, and this difference was highly statistically significant (p < 0.003). Table 2. Results of analysis of biochemical parameters; the values are shown as mean ± SD (*** p < 0.001; t-test). Table 2. Results of analysis of biochemical parameters; the values are show (*** p < 0.001; t-test). ALBO-OS Control ALT 74.50 ± 23.07 71.50 ± 31.11 AST 630.50 ± 637.22 844.32 ± 838.57 Urea 5.68 ± 0.81 5.21 ± 0.36 Creatinine 42.30 ± 5.50 40.00 ± 4.84 Bilirubin 1.12 ± 0.51 1.01 ± 0.32 Glucose 6.23 ± 1.70 5.48 ± 0.99 ALP 81.50 ± 13.91 *** 63.00 ± 9.80 3.2.3. Histological and Stereological Analysis of the Liver Tissue 3.2.3. Histological and Stereological Analysis of the Liver Tissue The morphology of the liver tissue (of animals orally exposed to ALBO-OS extract) was not significantly different to the control. Hepatocytes and hepatic plaques were normal and neatly placed, without abnormality in the form of a central vein. There were no pathological changes in liver tissue, such as cysts, fibrosis, loss of hepatocytes, necrosis, or lymphocyte aggregates, due to inflammatory reactions, in the experimental or in control group. 3.2.1. Main Clinical Symptoms and Observations (A) Comet assay results: (a) first repeat, (b) second repeat, (c) third repeat. Asterisks denote the significant differences with respect to the untreated control cells (*** p < 0.001; one-way ANOVA, Dunnett’s test). (B) Images of comets for: (a) negative control, different concentration of material’s extract: (b) 0.05 mg/mL, (c) 5 mg/mL, (d) 10 mg/mL, (e) 50 mg/mL and (f) positive control. Figure 1. (A). Comet assay results: a) first repeat, b) second repeat, c) third repeat. Asterisks denote the significant differences with respect to the untreated control cells (***p < 0.001; one-way ANOVA, Dunnett's test). (B). Images of comets for: a) negative control, different concentration of material’s extract: b) 0.05 mg/ml, c) 5 mg/ml, d) 10 mg/ml, e) 50 mg/ml and f) positive control. Figure 2. Average body weights of experimental and control animals during the study of chronic systemic toxicity of ALBO-OS. 2 2 R lt f Bl d A l i Figure 2. Average body weights of experimental and control animals during the study of chronic systemic toxicity of ALBO-OS. Figure 2. Average body weights of experimental and control animals during the study of chronic systemic toxicity of ALBO-OS. Figure 2. Average body weights of experimental and control animals during the study of chronic systemic toxicity of ALBO-OS. 2 R lt f Bl d A l i Figure 2. Average body weights of experimental and control animals during the study of chronic systemic toxicity of ALBO-OS. Figure 2. Average body weights of experimental and control animals during the study of chronic systemic toxicity of ALBO-OS. Figure 2. Average body weights of experimental and control animals during the study of chronic systemic toxicity of ALBO-OS. Figure 2. Average body weights of experimental and control animals during the study of chronic systemic toxicity of ALBO-OS. Figure 2. Average body weights of experimental and control animals during the study of chronic systemic toxicity of ALBO-OS. 7 of 21 Nanomaterials 2020, 10, 918 3.2.2. Results of Blood Analysis 3.2.2. Results of Blood Analysis Further histological and cytological analysis of liver tissue was based on the comparison of fifteen stereological parameters (Table 3). The number and numerical density (p < 0.05), and surface area of capillary endothelial cells (p < 0.05) increased in the experimental group relative to control (Table 3 and Figure 3A). The digital processing of the cross-section of the liver tissue in the RGB program revealed an increase in the number, numerical density, and number of mitosis in treated group (Figure 3C). The hepatocytes with two nuclei were revealed in experimental group (Figure 3B,D, red circles), evidencing the higher number of mitosis, in comparison to the control. Although, the increase was not statistically significant (p > 0.05) (Table 3). 8 of 21 Nanomaterials 2020, 10, 918 Table 3. Stereological parameters of the liver of the control and treated groups of rats; values are shown as mean ± SD (* p < 0.05; t-test). Parameter ALBO-OS Control Volume density of hepatocytes (mm0) 0.681 ± 0.032 0.656 ± 0.045 Volume density of capillary sinusoids (mm0) 0.204 ± 0.008 0.163 ± 0.005 Volume density of connective tissue (mm0) 0.138 ± 0.004 0.126 ± 0.003 Number of hepatocytes 273,818.2 ± 24,146.0 255,168.4 ± 21,822.7 Numerical density of hepatocytes (mm−3) 47,887.4 ± 3119.6 44,575.3 ± 2632.9 Surface area of hepatocytes (µm2) 152.8 ± 4.1 148.5 ± 2.9 Surface area of hepatic nucleuses (µm2) 49.2 ± 1.9 46.8 ± 2.1 NCO of hepatocytes 0.383 ± 0.022 0.324 ± 0.023 Mitotic index of hepatocytes 1.77 ± 0.234 1.61 ± 0.24 Number of connective tissue cells 138,442.5 ± 16,443.4 127,486.1 ± 17,518.1 Numerical density of connective tissue cells (mm−3) 24,888.3 ± 3084.8 21,934.4 ± 2366.6 Surface area of connective tissue cells (µm2) 103.4 ± 2.4 99.6 ± 3.3 Number of capillary endothelial cells 328,132.2 ± 32,336.3 * 275,915.5 ± 29,079.0 Numerical density of capillary endothelial cells (mm−3) 53,714.3 ± 953.7 * 48,068.5 ± 2806.7 Surface area of capillary endothelial cells (µm2) 84.5 ± 4.6 75.1 ± 3.9 Nanomaterials 2020, 10, x FOR PEER REVIEW 9 of 22 hepatocytes with two nuclei were revealed in experimental group (Figure 3B and 3D, red circles), evidencing the higher number of mitosis, in comparison to the control. Although, the increase was not statistically significant (p > 0.05) (Table 3). Figure 3. Micrographs of the histological cross-section of the liver of the control group (a) and treated group (b), (hematoxylin-eosin (H&E)). (A). 3.2.2. Results of Blood Analysis White arrows show connective tissue and black show blood vessels. Magnification 20×; (B). Black arrows show hepatocytes’ nuclei, and red circles show hepatocytes with two nuclei. Magnification 50×; (C). Red scalpers show hepatocytes’ nuclei. Magnification 50×, digitally processed RGB technique; (D). Black arrows show capillary sinusoids, and red circles show hepatocytes with two nuclei. Magnification 50×. Figure 3. Micrographs of the histological cross-section of the liver of the control group (a) and treated group (b), (hematoxylin-eosin (H&E)). (A) White arrows show connective tissue and black show blood vessels. Magnification 20×; (B) Black arrows show hepatocytes’ nuclei, and red circles show hepatocytes with two nuclei. Magnification 50×; (C) Red scalpers show hepatocytes’ nuclei. Magnification 50×, digitally processed RGB technique; (D) Black arrows show capillary sinusoids, and red circles show hepatocytes with two nuclei. Magnification 50×. Table 3. Stereological parameters of the liver of the control and treated groups of rats; values are shown as mean ± SD (* p < 0.05; t-test). Parameter ALBO-OS Control Volume density of hepatocytes (mm0) 0.681 ± 0.032 0.656 ± 0.045 Volume density of capillary sinusoids (mm0) 0.204 ± 0.008 0.163 ± 0.005 Volume density of connective tissue (mm0) 0.138 ± 0.004 0.126 ± 0.003 Number of hepatocytes 273,818.2 ± 24,146.0 255,168.4 ± 21,822.7 Numerical density of hepatocytes (mm−3) 47,887.4 ± 3119.6 44,575.3 ± 2632.9 Surface area of hepatocytes (µm2) 152.8 ± 4.1 148.5 ± 2.9 Surface area of hepatic nucleuses (µm2) 49.2 ± 1.9 46.8 ± 2.1 NCO of hepatocytes 0.383 ± 0.022 0.324 ± 0.023 Mitotic index of hepatocytes 1.77 ± 0.234 1.61 ± 0.24 Number of connective tissue cells 138,442.5 ± 16,443.4 127,486.1 ± 17,518.1 Numerical density of connective tissue cells (mm−3) 24,888.3 ± 3084.8 21,934.4 ± 2366.6 Surface area of connective tissue cells (µm2) 103.4 ± 2.4 99.6 ± 3.3 Number of capillary endothelial cells 328,132.2 ± 32,336.3 * 275,915.5 ± 29,079.0 Numerical density of capillary endothelial cells (mm−3) 53,714.3 ± 953.7 * 48,068.5 ± 2806.7 Surface area of capillary endothelial cells (µm2) 84.5 ± 4.6 75.1 ± 3.9 Nanomaterials 2020, 10, x FOR PEER REVIEW 9 of 22 hepatocytes with two nuclei were revealed in experimental group (Figure 3B and 3D, red circles), evidencing the higher number of mitosis, in comparison to the control. Although, the increase was i i ll i ifi ( 0 05) (T bl 3) Figure 3. 3.2.2. Results of Blood Analysis Micrographs of the histological cross-section of the liver of the control group (a) and treated group (b), (hematoxylin-eosin (H&E)). (A). White arrows show connective tissue and black show blood vessels. Magnification 20×; (B). Black arrows show hepatocytes’ nuclei, and red circles show hepatocytes with two nuclei. Magnification 50×; (C). Red scalpers show hepatocytes’ nuclei. Magnification 50×, digitally processed RGB technique; (D). Black arrows show capillary sinusoids, and red circles show hepatocytes with two nuclei. Magnification 50×. Figure 3. Micrographs of the histological cross-section of the liver of the control group (a) and treated group (b), (hematoxylin-eosin (H&E)). (A) White arrows show connective tissue and black show blood vessels. Magnification 20×; (B) Black arrows show hepatocytes’ nuclei, and red circles show hepatocytes with two nuclei. Magnification 50×; (C) Red scalpers show hepatocytes’ nuclei. Magnification 50×, digitally processed RGB technique; (D) Black arrows show capillary sinusoids, and red circles show hepatocytes with two nuclei. Magnification 50×. 3.2.4. Histological and Stereological Analysis of the Kidney Tissue 3.2.4. Histological and Stereological Analysis of the Kidney Tissue 3.2.5. Histological and Stereological Analysis of the Spleen Tissue 3.2.5. Histological and Stereological Analysis of the Spleen Tissue Histological analysis revealed no pathological changes in the spleen tissue, such as change in the morphology of the spleen tissue, loss of lymphocytes, cysts, fibrosis, loss of epithelial and radial cells, necrosis, or large lymphocytes accumulation. Epithelial, endothelial, and connective tissue cells have increased in their number, volume density, and numerical density in the treated group when compared to control (Table 5, Figure 5A,B), mostly with no statistical significance, except for the number of connective tissue cells (p < 0.05). Table 4. Stereological parameters of kidneys of the control group and treated group of rats; values are shown as mean ± SD (* p < 0.05; t-test). Table 4. Stereological parameters of kidneys of the control group and treated group of rats; values are shown as mean ± SD (* p < 0.05; t-test). Table 4. Stereological parameters of kidneys of the control group and treated group of rats; values are shown as mean ± SD (* p < 0.05; t-test). Parameter ALBO-OS Control Volume density of collecting ductus’ epithelial cells (mm0) 0.34 ± 0.04 0.33 ± 0.04 Volume density of blood sinusoids (mm0) 0.26 ± 0.03 0.23 ± 0.03 Volume density of connective tissue (mm0) 0.11 ± 0.01 0.10 ± 0.01 Volume density of glomeruli (mm0) 0.32 ± 0.04 0.30 ± 0.04 Number of collecting ducts’ epithelial cells 139,562 ± 1523 138,147 ± 3332 Numerical density of collecting ducts’ epithelial cells (mm−3) 20,107 ± 4116 19,572 ± 2621 Surface area of collecting ducts’ epithelial cells (µm2) 209 ± 43 204 ± 50 Surface area of collecting ducts’ epithelial cells nucleuses (µm2) 65 ± 3 63 ± 3 NCO of collecting ducts’ epithelial cells 0.28 ± 0.02 0.26 ± 0.03 Number of connective tissue cells 141,133 ± 18,097 134,698 ± 12,922 Numerical density of connective tissue cells (mm−3) 22,990 ± 2366 22,133.4 ± 2982.2 Surface area of connective tissue cells (µm2) 99 ± 11 102 ± 6 Number of capillary endothelial cells 306,126 ± 24,065 296,854 ± 26,658 Numerical density of capillary endothelial cells (mm−3) 39,141 ± 3342 37,645 ± 4459 Surface area of capillary endothelial cells (µm2) 77 ± 4 75 ± 4 Surface area of glomeruli (µm2) 3086 ± 415 4060 ± 535 * Bowman’s space 49 ± 4 44 ± 4 Table 5. 3.2.4. Histological and Stereological Analysis of the Kidney Tissue 3.2.4. Histological and Stereological Analysis of the Kidney Tissue Histological analysis revealed no pathological changes in kidney tissue, such as the loss of cells of collecting ducts, loss of glomeruli, cysts, fibrosis, necrosis, or lymphocyte aggregates and nodules. Additionally, there was no infiltration of inflammatory cells, inflammation or edema in glomeruli. The volume densities of the epithelial cells of the collecting ducts, blood capillaries, connective tissue, and glomeruli were higher in the treated group when compared to the control (Table 4 and Figure 4A), with no statistical significance. The surface area of the epithelial cells, their nuclei, and the NCO ratio did not change significantly in the experimental group, as compared to the control (p > 0.05, Table 4, Figure 4B and 4C). Analysis regarding connective tissue and blood sinusoids showed their slight change in morphology (p > 0.05, Table 4, and Figure 4D). The surface area of glomeruli significantly decreased in the experimental group relative to the control (p < 0.05), while the surface of Bowman’s space slightly increased (Table 4 and Figure 4E). Histological analysis revealed no pathological changes in kidney tissue, such as the loss of cells of collecting ducts, loss of glomeruli, cysts, fibrosis, necrosis, or lymphocyte aggregates and nodules. Additionally, there was no infiltration of inflammatory cells, inflammation or edema in glomeruli. The volume densities of the epithelial cells of the collecting ducts, blood capillaries, connective tissue, and glomeruli were higher in the treated group when compared to the control (Table 4 and Figure 4A), with no statistical significance. The surface area of the epithelial cells, their nuclei, and the NCO ratio did not change significantly in the experimental group, as compared to the control (p > 0.05, Table 4, Figure 4B,C). Analysis regarding connective tissue and blood sinusoids showed their slight change in morphology (p > 0.05, Table 4, and Figure 4D). The surface area of glomeruli significantly decreased in the experimental group relative to the control (p < 0.05), while the surface of Bowman’s space slightly increased (Table 4 and Figure 4E). 9 of 21 Nanomaterials 2020, 10, 918 3.2.5. Histological and Stereological Analysis of the Spleen Tissue Magnification 20×; (B) Yellow arrows show nuclei, and red arrows show epithelial cells of collecting ducts. Magnification 50×; (C) Red arrows show the epithelial cells of collecting ducts. Magnification 50×; digitally processed RGB technique; (D) White arrows show the connective tissue of collecting ducts. Magnification 50×; and, (E) White arrows show the blood sinusoids of the collection ducts. Magnification 100×. Nanomaterials 2020, 10, x FOR PEER REVIEW 11 of 22 0.217 ± 0.04 0.167 ± 0.05 223847.1 ± 204568.3 ± 33317.8 241697.6 ± 40694.6 223148.5 ± 20204.4 39905.4 ± 3588.8 78.6 ± 2.5 432527.8 ± 37841.8* 348336.9 ± 2334.7 11 of 22 0.217 ± 0.04 0.167 ± 0.05 223847.1 ± 204568.3 ± 33317.8 N t i l 2020 10 FOR P EER EER EER REVIEW Figure 4. Micrographs of histological cross-sections of the kidney of the control (a) and treated group (b), (H&E). (A). White arrows show glomeruli, red arrows show blood sinusoids and yellow arrows show connective tissue. Magnification 20×; (B). Yellow arrows show nuclei, and red arrows show epithelial cells of collecting ducts. Magnification 50×; (C). Red arrows show the epithelial cells of collecting ducts. Magnification 50×; digitally processed RGB technique; (D). White arrows show the connective tissue of collecting ducts. Magnification 50×; and, (E). White arrows show the blood sinusoids of the collection ducts. Magnification 100×. Figure 4. Micrographs of histological cross-sections of the kidney of the control (a) and treated group (b), (H&E). (A) White arrows show glomeruli, red arrows show blood sinusoids and yellow arrows show connective tissue. Magnification 20×; (B) Yellow arrows show nuclei, and red arrows show epithelial cells of collecting ducts. Magnification 50×; (C) Red arrows show the epithelial cells of collecting ducts. Magnification 50×; digitally processed RGB technique; (D) White arrows show the connective tissue of collecting ducts. Magnification 50×; and, (E) White arrows show the blood sinusoids of the collection ducts. Magnification 100×. 241697.6 ± 40694.6 223148.5 ± 20204.4 39905.4 ± 3588.8 78.6 ± 2.5 432527.8 ± 37841.8* 348336.9 ± 2334.7 3.2.5. Histological and Stereological Analysis of the Spleen Tissue Histological analysis revealed no pathological changes in the spleen tissue, such as change in the morphology of the spleen tissue, loss of lymphocytes, cysts, fibrosis, loss of epithelial and radial cells, necrosis, or large lymphocytes accumulation. 3.2.5. Histological and Stereological Analysis of the Spleen Tissue Stereological parameters of the spleen of the control group and treated group; values are Table 5. Stereological parameters of the spleen of the control group and treated group; values are shown as mean ± SD (* p < 0.05; t-test). Parameter ALBO-OS Control Volume density of epithelial cells (mm0) 0.382 ± 0.036 0.359 ± 0.029 Volume density of lymphocytes (mm0) 0.409 ± 0.036 0.304 ± 0.058 Volume density of connective tissue (mm0) 0.119 ± 0.023 0.115 ± 0.025 Volume density of blood capillaries (mm0) 0.217 ± 0.04 0.167 ± 0.05 Number of epithelial cells 223,847.1 ± 27,129.8 204,568.3 ± 33,317.8 Numerical density of epithelial cells (mm−3) 37,498.5 ± 3318.7 35,641.8 ± 2625.9 Surface area of epithelial cells (µm2) 128.6 ± 2.7 131.5 ± 4.2 Surface area of epithelial cells’ nucleuses (µm2) 48.2 ± 5.3 41.2 ± 3.1 NCO of epithelial cells 0.274 ± 0.045 0.285 ± 0.052 Number of connective tissue cells 149,901.1 ± 6287.0 * 137,006.4 ± 8694.3 Numerical density of connective tissue cells (mm−3) 26,104.9 ± 2169.8 23,146.3 ± 2871.5 Surface area of connective tissue cells (µm2) 110.0 ± 4.6 105.6 ± 5.7 Number of capillary endothelial cells 241,697.6 ± 40,694.6 223,148.5 ± 20,204.4 Numerical density of capillary endothelial cells (mm−3) 39,905.4 ± 3588.8 34,969.4 ± 2599.3 Surface area of capillary endothelial cells (µm2) 78.6 ± 2.5 74.16 ± 2.3 Number of lymphocytes 432,527.8 ± 37,841.8 * 348,336.9 ± 23,324.7 Numerical density of lymphocytes (mm−3) 57,323.4 ± 2201.4 * 49,131.5 ± 3740.2 Surface area of lymphocytes (µm2) 97.2 ± 3.5 96.4 ± 4.9 10 of 21 10 of 21 Nanomaterials 2020, 10, 918 Surface are Su Figure 4. Micrographs of histological cross-sections of the kidney of the control (a) and treated group (b), (H&E). (A). White arrows show glomeruli, red arrows show blood sinusoids and yellow arrows show connective tissue. Magnification 20×; (B). Yellow arrows show nuclei, and red arrows show epithelial cells of collecting ducts. Magnification 50×; (C). Red arrows show the epithelial cells of collecting ducts. Magnification 50×; digitally processed RGB technique; (D). White arrows show the connective tissue of collecting ducts. Magnification 50×; and, (E). White arrows show the blood sinusoids of the collection ducts. Magnification 100×. Figure 4. Micrographs of histological cross-sections of the kidney of the control (a) and treated group (b), (H&E). (A) White arrows show glomeruli, red arrows show blood sinusoids and yellow arrows show connective tissue. 3.2.5. Histological and Stereological Analysis of the Spleen Tissue Epithelial, endothelial, and connective tissue cells have increased in their number, volume density, and numerical density in the treated group when compared to control (Table 5, Figure 5A and 5B), mostly with no statistical significance, except for the number of connective tissue cells (p < 0.05). The number and numerical density of lymphocytes in the experimental group were higher in comparison to control (p < 0.05, Table 5, Figure 5C and 5D). A large number of mature lymphocytes in sinusoids and between the star-shaped epithelial cells of the spleen were observed. Lymphocytes were highly colored, uniformly distributed, with no signs of focal aggregations in tissue. Table 5. Stereological parameters of the spleen of the control group and treated group; values are shown as mean ± SD (*p < 0.05; t-test). Parameter ALBO-OS Control Volume density of epithelial cells (mm0) 0.382 ± 0.036 0.359 ± 0.029 Volume density of lymphocytes (mm0) 0.409 ± 0.036 0.304 ± 0.058 Volume density of connective tissue (mm0) 0.119 ± 0.023 0.115 ± 0.025 Figure 5. Micrographs of the histological cross-section of the rat spleen of the control (a) and treated group (b), (H&E). (A). White arrows show connective tissue and red arrows show lymphatic tissue. Magnification 200×; (B). White arrows show epithelial cells. Magnification 50×; (C). White arrows show lymphocytes and red arrows show blood vessel. Magnification 50× and, (D). Red arrows show lymphocytes. Magnification 50×; digitally processed RGB technique. 3 3 6 Expression of Proteins Ki67 and CD68 in Liver Kidney and Spleen Figure 5. Micrographs of the histological cross-section of the rat spleen of the control (a) and treated group (b), (H&E). (A) White arrows show connective tissue and red arrows show lymphatic tissue. Magnification 200×; (B) White arrows show epithelial cells. Magnification 50×; (C) White arrows show lymphocytes and red arrows show blood vessel. Magnification 50× and, (D) Red arrows show lymphocytes. Magnification 50×; digitally processed RGB technique. ereological Analysis of the revealed no pathological n tissue, loss of lymphocyte cytes accumulation. Epith er, volume density, and ble 5, Figure 5A and 5B), tissue cells (p < 0 05) 3.2.5. 3.2.5. Histological and Stereological Analysis of the Spleen Tissue Histological and Ste Histological analysis morphology of the spleen necrosis, or large lympho increased in their numb compared to control (Tab the number of connective Sp Sp 3.2 Spleen Tissue changes in the spleen tissu es, cysts, fibrosis, loss of ep elial, endothelial, and con numerical density in th mostly with no statistical ue, such as change in the pithelial and radial cells, nective tissue cells have he treated group when significance, except for 5B), the number of connective The number and nu comparison to control (p in sinusoids and between were highly colored, unif Table 5. Stereological shown as mean ± SD ( (p ) umerical density of lymph < 0.05, Table 5, Figure 5C n the star-shaped epithelia formly distributed, with n parameters of the spleen of *p < 0.05; t-test). ocy hocytes in the experimenta and 5D). A large number al cells of the spleen were o signs of focal aggregatio the control group and treat al group were higher in of mature lymphocytes observed. Lymphocytes ns in tissue. ed group; values are Parameter ALBO-OS Control Volume density of epithelial cells (mm0) 0.382 ± 0.036 0.359 ± 0.029 Volume density of lymphocytes (mm0) 0.409 ± 0.036 0.304 ± 0.058 Volume density of connective tissue (mm0) 0.119 ± 0.023 0.115 ± 0.025 Figure 5. Micrographs of the histological cross-section of the rat spleen of the control (a) and treated group (b), (H&E). (A). White arrows show connective tissue and red arrows show lymphatic tissue. Magnification 200×; (B). White arrows show epithelial cells. Magnification 50×; (C). White arrows show lymphocytes and red arrows show blood vessel. Magnification 50× and, (D). Red arrows show lymphocytes. Magnification 50×; digitally processed RGB technique. Figure 5. Micrographs of the histological cross-section of the rat spleen of the control (a) and treated group (b), (H&E). (A) White arrows show connective tissue and red arrows show lymphatic tissue. Magnification 200×; (B) White arrows show epithelial cells. Magnification 50×; (C) White arrows show lymphocytes and red arrows show blood vessel. Magnification 50× and, (D) Red arrows show lymphocytes. Magnification 50×; digitally processed RGB technique. 11 of 21 Nanomaterials 2020, 10, 918 The number and numerical density of lymphocytes in the experimental group were higher in comparison to control (p < 0.05, Table 5, Figure 5C,D). A large number of mature lymphocytes in sinusoids and between the star-shaped epithelial cells of the spleen were observed. 3.2.6. Expression of Proteins Ki67 and CD68 in Liver, Kidney, and Spleen The highest average number of Ki67 positive cells was detected in kidney experimental group, while the smallest number of Ki67 positive cells were detected in liver control group, which indicated that the proliferation ratio was different in all three investigated organs (Figure 6). According to our results, the highest average number of immunoreactive CD68 cells was detected in spleen tissue samples of experimental group, while the smallest average number of cells were detected in the liver tissue samples (Figure 7). Nanomaterials 2020, 10, x FOR PEER REVIEW 12 of 22 Nanomaterials 2020, 10, x FOR PEER REVIEW 12 of 22 Figure 6. Representative images of Ki67 protein expression in rats’ liver, kidney and spleen tissue sections of experimental and control group, 40× magnification. Significant expression of Ki67+ cells was observed in all groups. Figure 6. Representative images of Ki67 protein expression in rats’ liver, kidney and spleen tissue sections of experimental and control group, 40× magnification. Significant expression of Ki67+ cells was observed in all groups. Figure 6. Representative images of Ki67 protein expression in rats’ liver, kidney and spleen tissue sections of experimental and control group, 40× magnification. Significant expression of Ki67+ cells was observed in all groups. l k d d l Figure 6. Representative images of Ki67 protein expression in rats’ liver, kidney and spleen tissue sections of experimental and control group, 40× magnification. Significant expression of Ki67+ cells was observed in all groups. Figure 6. Representative images of Ki67 protein expression in rats’ liver, kidney and spleen tissue sections of experimental and control group, 40× magnification. Significant expression of Ki67+ cells was observed in all groups. Figure 6. Representative images of Ki67 protein expression in rats liver, kidney and spleen tissue sections of experimental and control group, 40× magnification. Significant expression of Ki67+ cells was observed in all groups. Figure 7. Representative images of CD68 protein expression in rats’ liver, kidney and spleen tissue sections of experimental and control group, 40× magnification. Mild expression of CD68+ Figure 7. Representative images of CD68 protein expression in rats’ liver, kidney and spleen tissue sections of experimental and control group, 40× magnification. Mild expression of CD68+ immunoreactive cells was observed in all groups. Figure 7. Representative images of CD68 protein expression in rats’ liver, kidney and spleen tissue sections of experimental and control group, 40× magnification. Mild expression of CD68+ immunoreactive cells was observed in all groups. Figure 7. 3.2.5. Histological and Stereological Analysis of the Spleen Tissue Lymphocytes were highly colored, uniformly distributed, with no signs of focal aggregations in tissue. 3.2.6. Expression of Proteins Ki67 and CD68 in Liver, Kidney, and Spleen Representative images of CD68 protein expression in rats’ liver, kidney and spleen tissue i f i l d l 40 ifi i Mild i f CD68 Figure 7. Representative images of CD68 protein expression in rats’ liver, kidney and spleen tissue sections of experimental and control group, 40× magnification. Mild expression of CD68+ immunoreactive cells was observed in all groups Figure 7. Representative images of CD68 protein expression in rats’ liver, kidney and spleen tissue sections of experimental and control group, 40× magnification. Mild expression of CD68+ immunoreactive cells was observed in all groups. 12 of 21 Nanomaterials 2020, 10, 918 Differences between the average number of Ki67 positive cells was significantly higher in kidney tissue samples of experimental group in comparison to control (p < 0.05). Additionally, the average number of Ki67 positive cells was detected in liver (p < 0.05) and spleen (p < 0.05) experimental groups in comparison to control (Figure 8A). Figure 7. Representative images of CD68 protein expression in rats’ liver, kidney and spleen tissue sections of experimental and control group, 40× magnification. Mild expression of CD68+ immunoreactive cells was observed in all groups. Figure 8. Percentage area of Ki67 (A) and immunoreactive CD68+ (B) stained cells was calculated with ImageJ using 3 images per organ. The results were analyzed with a two-way ANOVA, a p value < 0.05 id d i ifi Figure 8. Percentage area of Ki67 (A) and immunoreactive CD68+ (B) stained cells was calculated with ImageJ using 3 images per organ. The results were analyzed with a two-way ANOVA, a p value < 0.05 was considered significant; * p < 0.05. Figure 8. Percentage area of Ki67 (A) and immunoreactive CD68+ (B) stained cells was calculated with ImageJ using 3 images per organ. The results were analyzed with a two-way ANOVA, a p value < 0.05 Figure 8. Percentage area of Ki67 (A) and immunoreactive CD68+ (B) stained cells was calculated with ImageJ using 3 images per organ. The results were analyzed with a two-way ANOVA, a p value < 0.05 was considered significant; * p < 0.05. was considered significant. The differences between the number of immunoreactive CD68 cells was not statistically significant in all three groups of investigated organs (Figure 8B). 4. Discussion This study aimed to characterize toxicological potential of ALBO OS scaffold by investigating its potential genotoxicity in vitro and systemic subchronic toxicity after oral exposure, which is very important for its potential application in dental medicine. Genotoxicity investigation on THP-1 cells using comet assay showed the lack of damaged DNAs in the cells that were cultivated in material’s extracts up to concentration 50 mg/mL which highly suggests that there were no changes inside of the cells on the level of DNA. This is in accordance with previous investigations that also reported low genotoxicity of hydroxyapatite and PLGA alone, which are the main components of the ALBO-OS [22–24]. The blood analysis showed that there were no significant changes in the hematological parameters between the experimental and control group. Neither myelotoxic nor autoimmune effects on peripheral blood cells were detected in the experimental groups. This is in agreement with previous reports on the low hazard of these material [13,25]. Among the analyzed biochemical parameters, only alkaline phosphatase was significantly higher in the experimental group, compared to the control. This difference indicated the potential of the absorption of calcium and phosphates from ALBO OS, which consequently might led to an increase of ALP serum [26]. The results of histopathological examination of systemic toxicity on liver, kidney and spleen sacrified rats after their oral exposure to extract of ALBO OS maximal concentration (100 mg/mL) during 120 days per oral feeding were particularly important for the determination of the toxicological profile ALBO OS. Accordingly, the liver is chosen due to its vital role in organism being reflected by its physiological functions, synthesis and detoxification of various metabolites. In other words, any lesions caused by drugs, chemicals, and pathological status could interrupt its functions [27]. The ALT level, which is found primarily in the liver, and is released into the circulation from damaged hepatocytes, was slightly higher in the experimental group, while the AST level, found in the erythrocytes, myocytes, and kidney cells also, was higher in the control, without significant differences [27]. Similar results of biocompatibility investigation of Mg-Zn materials were reported, with the assertion that there was no change in the hepatocyte architecture and morphology of liver lobules [28]. 4. Discussion 13 of 21 Nanomaterials 2020, 10, 918 The increased mitotic index and the number of hepatocytes with two nuclei could be explained by the liver adaption to the presence of new material in the organism [29]. It could be assumed that, as a reaction to chronical presence of ALBO OS extract in organism, the physiological reaction of increased function occurred. It is interesting to note that immunostaining confirmed parenchymal proliferation over increased expression value of the Ki67, while a number of immunoreactive CD68 positive cells remained in the physiological range. The increase in Ki-67 protein expression might be caused by the fact that posttranscriptional regulatory mechanisms suppress protein synthesis until the cells are at the G1/S boundary playing a critical role in the regulation of mitosis. In this case, like too many similar evidences published in other research papers, it seems that Ki67 is involved in the regulation of cell cycle progression, including DNA replication, higher-order chromatin organization, etc. [30,31]. In our previous study, the effect of calcium silicate and calcium aluminate implantation on systematic subchronic toxicity was evaluated [32]. It was concluded that materials induced normal and reversible response in the liver. Namely, the proliferation of parenchymal cells in this case was also reported, with no visible signs of pathological changes or immunological reaction to the materials [32]. reported, with no visible signs of pathological changes or immunological reaction to the materials [32]. An increase in the number and density of capillary endothelial cells (p < 0.05) (obtained as all other histological and immunohistochemical parameters included in this paper, by observation 12 animals in experimental group and nine animals in the control group) indicated a statistically significant increased blood flow through the liver in experimental group, when comparing with control group of rats, which is characteristic for processes with more intense blood filtration. Additionally, significant increase the number of endothelial cells (p < 0.05) participating in the formation of new blood sinusoids was observed, which indicated that the process of the necessary adaptation of the rats’ liver to ALBO-OS is occurred. As it is well known, the liver sinusoidal endothelial cells (LSEC) constitute the sinusoidal wall, or endothelial lining. Therefore, they can be observed as unique capillaries that differ from other capillaries in the body, because of the presence of open pores or fenestrae lacking a diaphragm and a basal lamina underneath the endothelium. 4. Discussion Fray has developed a mathematical model suggesting the stretch-dependent influx of extracellular calcium ions into juxtaglomerular cells to account for the pressure control of renin secretion [40]. In detail, an increase of the renal artery pressure would enhance the circumferential stretch of the juxtaglomerular cells, thereby causing membrane depolarization. Therefore, a rise of the intracellular calcium concentration inhibits reining secretion from these cells, as a consequence of the renal glomeruli shrinkage [29,41,42]. Additionally, the change was reflected in the slight increase in the surface of Bowman’s space as a sign of increased glomerular filtration. In our study, while the spleen retained a normal physiological architecture, the number of lymphocytes increased in the treated rats, thus indicating an immune response to ALBO OS extract. While proliferation of lymphocytes was induced by material during four months of oral administration, lymphocytes were highly colored, uniformly distributed, with no signs of focal aggregations in spleen tissue, suggesting mature lymphocytes were predominantly in the tissue, with no signs of tissue hyperplasia. yp p Furthermore, number of CD68 positive immune cells in spleen was similar in the experimental and control group. In previous investigations of systemic toxicity of new endodontic material based on hydroxyapatite and calcium silicates, the slight hypertrophic changes in white pulp were reported, with no adverse effect on the spleen function and its immune response activation [36]. Statistical analysis showed a significant increase (p < 0.05) of the number of connective cells in the spleen of rats, during the treatment with ALBO-OS, which is a consequence of the increased production of lymphocytes in the spleen and their increased activity in the blood. Additionally, the increase of the number and numerical density of lymphocytes in the spleen of rats during the treatment by ALBO OS was also statistically significant (p < 0.05). Calcium plays an essential role in the activation and maturation of lymphocytes. As a second messenger, calcium ions are involved in most biochemical processes that transduce the external signals into cell responses. An increase in Ca2+ ions and subsequent protein kinase C activation is indispensable for T-lymphocyte proliferation and an increase of their number [43]. Previous studies reported that increased Ca2+ ions promotes IL-2 mRNA gene expression and protein synthesis and that IL-2 is a potent T-lymphocyte growth factor [28,44,45]. 4. Discussion The increasing quantity of the Ca2+ ions, interacting with lipid soluble ionophores, which transport Ca2+ ions across liver cell membranes, can induce increased transport Ca2+ ions inside of the liver sinusoidal endothelial cells, influencing their contraction and, consequently blood flow diminishing through them. Therefore, the balance establishing in blood flow through sinusoids, the new blood sinusoids should be formed, simultaneously leading to the increased number of the endothelial cells [20,33–35]. The connective tissue cells, as stromal cells, did not change their structure or density, suggesting no pathological change on liver tissue occurred during four months of exposure. Similar to our results, in previous studies of systematic toxicity of new endodontic materials that are based on calcium hydroxyapatite and calcium silicates, an increased mitotic activity of parenchymal cells was observed and followed by the increased density of the cells and a moderate increase in the liver sinusoids and hepatocyte surface [36,37]. The serum levels of creatinine, as an indicator of kidney function and the change of renal histopathology [38], were very similar in the experimental and control group, as well as values of urea and bilirubin. In the previous study, the absence of any morphological changes in the kidney tissue due to the implantation of biocompatible Mg-Nd-Zn-Zr material into the bone of the rabbit was reported [39], which is in accordance with the presented results. The number of epithelial cells in collecting ducts and the connective tissue cells, as well as other stereological and cytological parameters, were not significant (p > 0.05), while immunostaining revealed significantly higher number of Ki67 positive cells, indicating cell proliferation in experimental group, increased kidney activity, and blood flow. In the study of mineral trioxide aggregate effect on the liver and kidney function, it was reported that the kidney function had subsequently increased after a month, while the increased liver function was observed during the first week and further increased during the observed period [29]. Glomeruli, the beneficial components of the kidneys influenced by all matter in the blood reacted by shrinkage in the presence of material’s products, while its morphology was preserved. Besides, the area of renal kidney glomeruli of rats (p < 0.05) was statistically significantly reduced during the treatment by ALBO-OS, probably as a consequence of the increase of filtration 14 of 21 Nanomaterials 2020, 10, 918 blood flow into the them. 4. Discussion Since spleen primarily acts as the main filter for blood-borne pathogens and antigens, an increased number of lymphocytes could be explained by higher blood perfusion through spleen and the presence of the materials’ extract at high concentration in organism during a prolonged time period [46]. Furthermore, haematological analysis revealed no increase of lymphocytes in systematic circulation in the experimental group, which implied the transient and physiological nature of increased spleen tissue lymphocytes. An estimate of blood volume in the rat is 4.7 to 8.0 mL per 100 g body volume (BW) (mean value 7.0 mL) [47]. The BW in our case for all rats were 240–260 g, from which follows that blood quantity following Lee and Blaufox research [47] was probably between 16.8–18.2 mL. Taking in mind that all of the experimental rats were fed with 1 mL/day of fresh saturated solution of extract obtained by immersion 100 mg/mL for 120 days, the total quantity of used extract for 120 days is 120 mL, which is 6.6–7.1 times higher than the total volume of the blood of rats. Although this is exceptionally high quantity of Ca2+ ions in rat’s blood, the pathological effect expressed over significant changes of morphology of tissue of the liver, kidney, and spleen were not registered, suggesting that the used nanomaterial is biocompatible. Appendix A. Appendix A.1. Physicochemical Characterization of the Extract of the ALBO-OS Scaffolds Appendix A.1. Physicochemical Characterization of the Extract of the ALBO-OS Scaffolds X-ray diffraction (XRD) performed phase analysis of HA using a Philips PW 1050 diffractometer with Cu-Kα1–2 lamp. The data were collected in the 2θ range from 15–65◦, in steps of 5◦, and 2 s per step time exposure. The microstructure of the ALBO-OS scaffold was investigated by micro-computed tomography (µCT) (SkyScan, Bruker 1172, Kontich, Belgium), and for the porosity analysis CTAn 1.14.4.1 software (SkyScan, Bruker) was used. For the analysis of porosity, a classical method, known as the liquid displacement method, was also used. The absolute ethanol with density ρ was used as displacement liquid because of its ability to easily penetrate into the scaffolds without inducing the shrinkage or swelling of the PLGA. The samples, pycnometer, and ethanol were kept at 25 ◦C for 4 h prior to testing. A pycnometer that was filled with ethanol was weighed, W1. A scaffold sample of weight WS was immersed into the bottle full of ethanol, and the bottle was then slowly surged until the air in the scaffold was all removed. At last, the pycnometer was refilled with ethanol and was weighed, W2. The scaffold saturated with ethanol was taken out of the pycnometer and the pycnometer was weighed, W3. The volume of the scaffold sample was calculated vs. = (W1 −W2 + WS)/ρ, as well as the total volume of the pores: Vp = (W2 −W3 + WS)/ρ. The porosity of the sample can be calculated by using equation: P = Vp/(Vp + Vs) = (W2 −W3 −WS)/(W1 −W3) [48]. Scanning electron microscopy (SEM) was used to analyze the material microstructure. For SEM observations samples were fixated in gradient ethanol concentrations (10–100%) and coated with gold by sputtering and JEOL JSM-5300 microscope was used. In order to determine the rate of the decomposition/degradation of nanoHAP granules, they were submerged in mixture of the medium of a phosphate buffer (PBS) and Tris buffer (tris (hydroxymethyl) amino methane) in the ratio 1:1, with pH 7.37. The rate of degradation was determined as the difference in the calcium ions concentrations in the medium during experiment in comparison to starting concentration, and measured by inductively coupled plasma mass spectrometry (iCAP 6500 Duo ICP, Thermo Fisher Scientific, Inc. USA). For these purposes, aliquots of 3 mL of the medium were taken. 5. Conclusions The tested ALBO OS proved that it could immitate natural bone by its arhitecture and mechanical properties, as well by the rate of resorption, as confirmed by our previous investigations of its structure and physico mechanical characteristics briefly described in the Appendix A of this paper. In additon, this material also showed low hazard potential, as determind by in vitro genotoxicity study and sistemic toxicity study. Genotoxic study confirmed no genotoxic effect, even at the highest concentration of the 50 mg ALBO OS/mL. Daily oral administration of ALBO OS extract extremely high concentration 15 of 21 Nanomaterials 2020, 10, 918 (100 mg/mL) through a prolonged time period (120 days of their per oral feeding) induced no adverse and reversible response in rats’ liver, kidney, and spleen. Despite the significant increase average number of the Ki67 suggesting cell proliferation, a slight increase in number of immunoreactive CD68 positive cells in the presence of ALBO OS, evidencing no difference in number of tissue immunoreactive cells, although the proliferation of parenchymal and stromal tissue occurred. This study suggests the good biocompatibility of novel nanostructured scaffold, which could serve as a suitable candidate for future investigations generally in regenerative medicine. Author Contributions: Conceptualization, S.Ž. and V.J.; Formal analysis, S.P., D.T. and O.M.A.; Funding acquisition, D.D.; Investigation, S.P., O.M.A., B.P. and D.D.; Methodology, S.P. and B.P.; Project administration, S.Ž. and V.J.; Resources, O.M.A., B.P. and S.Ž.; Supervision, V.J.; Visualization, S.P. and D.T.; Writing–original draft, S.P., D.T., O.M.A., B.P., D.D., S.Ž. and V.J.; Writing–review & editing, D.T., D.D. and V.J. All authors have read and agreed to the published version of the manuscript. Funding: This study was supported by the Ministry of Education, Science and Technological Development of the Republic of Serbia (Project No. 172026), and Slovenian research agency (J1-9162). Conflicts of Interest: The authors declare no conflict of interest. The funders had no role in the design of the study; in the collection, analyses, or interpretation of data; in the writing of the manuscript, or in the decision to publish the results. Appendix A. The measurement started 10 minutes after immersion of the granules into the mixed medium and set according to the following schedule: 10 and 30 min., one, four, and eight hours, one, two, five, Nanomaterials 2020, 10, 918 16 of 21 eight, 12, 15, 19, and 22 days. The obtained values are presented in the diagram depending on the calcium ions concentration. Compressive strength of the granules ALBO-OS was measured after various immersion times in balanced salt Hanks solution (8 g NaCl, 0.35 g NaHCO3, 0.4 g KCl, 0.06 g KH2PO4, 0.1 g MgCl2 × 6H2O, 0.14 g CaCl2, 0.06 g Na2HPO4 × 2H2O, 0.06 g MgSO4 × 7H2O, 1 g glucose in 1000 mL of dH2O) with initial pH value 7.4. The samples were immersed into 10 mL of solution at 37 ◦C following the schedule. For the test of compressive strength, the porous compacts of nanoHAP were used, with completely equivalent structure of the ALBO-OS granules, with the dimension of 16 × 16 × 10 mm. For the measurement Instron model 4204 (Instron Corp., Canton, MA, USA) was used, with previous preparation of the samples by polishing with 600 and 1200 grit sandpaper on an automated rotary grinder, under gently running tap water, after which they were dried with adsorbent paper. The standard deviation was determined by measuring strength of the 10 samples. Appendix A.2. A Brief Review of ALBO-OS Structural and Physicochemical Characteristics XRD revealed that the phase composition of the HA corresponds to carbonate calcium hydroxyapatite Ca10(PO4)6(OH)2 (JCPDS 9–432). All characteristic diffraction peaks were present: (002) at 25.98◦, (120) at 29.03◦, (121) at 31.87◦, (300) at 33.07◦, (310) at 39.94◦, (222) at 2θ, and (123) at 49.54◦(Figure A1A). Very high porosity of ALBO-OS compact was revealed by liquid displacement method and particularly micro CT analysis (Figure A1B). The total porosity was 75.4%, which was also the value of the open porosity. Additionally, a significantly high number of connected pores per mm3 was found, 13.6 in value. Micro CT show very wide pore distribution, as shown in the Table A1. From the Table A1, it is visible that although the average pore volume is the smallest for radius pore in the range 0.06 mm and 0.1 mm, its number is the highest (almost 2/3 total pore number). Most of them are in the radius range less than 0.02 mm, (83.3% of total pore number). From the other side, the number of pores with radius in the range higher than 0.4 mm is only about 5.4%. Nanomaterials 2020, 10, x FOR PEER REVIEW 17 of 22 of the open porosity. Additionally, a significantly high number of connected pores per mm3 was f d 13 6 i l Mi CT h id di t ib ti h i th T bl S Figure S1. (A). XRD pattern of HA; (B). Micro-CT scan of nanoHAP-PLGA. Figure A1. (A) XRD pattern of HA; (B) Micro-CT scan of nanoHAP-PLGA. Figure S1. (A). XRD pattern of HA; (B). Micro-CT scan of nanoHAP-PLGA. Figure A1. (A) XRD pattern of HA; (B) Micro-CT scan of nanoHAP-PLGA. 17 of 21 Nanomaterials 2020, 10, 918 Table A1. Values of ALBO-OS porosity. Appendix A.2. A Brief Review of ALBO-OS Structural and Physicochemical Characteristics Pore Sizes Total Pore Volume (%) Thickness Distribution of the Scaffold Inner Walls (%) Number of Pores with Average Radius in the Given Range Pores of Average Radius in the Given Range in Total Number of Pores (%) 0.06 mm–0.1 mm 2.52 8.90 9333 61.6 0.1 mm–0.2 mm 5.60 64.42 3294 21.7 0.2 mm–0.3 mm 5.83 26.68 737 4.8 0.3 mm–0.4 mm 11.66 / 971 6.4 0.4 mm–0.5 mm 17.44 / 379 2.5 0.5 mm–0.6 mm 18.18 / 216 1.4 0.6 mm–0.7 mm 16.96 / 119 0.8 0.7 mm–0.8 mm 15.06 / 72 0.5 More than 0.8 mm 6.75 / 25 0.2 The SEM micrographs clearly showed that the obtained scaffolds had very porous three-dimensional (3D) macrostructure (Figure A2). SEM examinations show a well-defined internal geometry, with fine pores of multimodal diameters, which is particularly visible in Figure A2B. The pores much higher than 5 µm and elongated grains sizes of 5–15 µm, can be noticed in the mean part of figure, while in the fragments given in the figure edges, very fine porosity can also be noticed, with elongated and spherical grains sizes order of the 120 nm in radius, being interconnected with surrounding grains, forming among them pores of similar radius (100 to 130 nm), and grains of mean diameters from 100 to 220 nm (clearly visible in the higher SEM magnification). The particles are mostly of polygonal shape, being mutually interconnected into clusters with pores in their centers and edges, forming characteristic micro- and nano-patterns. Appendix A.2.1. Rate of ALBO-OS Degradation Figure A2 provides the obtained results of the rate of degradation of the ALBO-OS. From the concentration of the calcium ions in saturated part od the solubility curve, the solubility product was determined. The obtained value of 7.85 · 10−44 was very close to the product solubility of biological apatite (3.51 · 10−43) (Figure A2C). The rate of ALBO-OS degradation was examined during prolonged-time period (0–428 h), as it is shown in histogram in Figure A2D. Changes of the solubility rate as a change of concentration of calcium ions in the time unit show that in static system the rate of solubility is the extremely high for initial 8 h measured (0.024 mg/l·h), while, after 120 h, it significantly decreases (0.001 mg/l·h). It can be noticed that the peak of calcium ion release is present during first five days of immersion. Finally after 528 h it is almost neglectable (7.4 · 10−6 mg/l·h), similarly to the biological apatite. Appendix A.2.2. Change of Compressive Strength during ALBO-OS Degradation Appendix A.2.2. Change of Compressive Strength during ALBO-OS Degradation During six weeks of ALBO-OS immersion in Hanks solution, which has a composition close to the composition of body fluids, it can be noticed that compressive strength is changed from 15.5 MPa to 7 MPa. Further changes between 13 and 26 weeks were relatively low (Figure A2E). 18 of 21 19 of 22 18 of 21 19 of 22 Nanomaterials 2020, 10, 918 Nanomaterials 2020 10 x FOR Figure S2. The SEM micrographs of nanoHAP-PLGA (A) 5000x, (B) 50.000x; (C) Change of the Ca2+ concentration in solution containing nanoHAP granules with time; (D) The rate of nanoHAP degradation during prolonged time period (0–428 h); and, (E) Change of compressive strength during nanoHAP degradation. Figure A2. The SEM micrographs of nanoHAP-PLGA (A) 5000×, (B) 50,000×; (C) Change of the Ca2+ concentration in solution containing nanoHAP granules with time; (D) The rate of nanoHAP degradation during prolonged time period (0–428 h); and, (E) Change of compressive strength during nanoHAP degradation. Figure S2. The SEM micrographs of nanoHAP-PLGA (A) 5000x, (B) 50.000x; (C) Change of the Ca2+ concentration in solution containing nanoHAP granules with time; (D) The rate of nanoHAP degradation during prolonged time period (0–428 h); and, (E) Change of compressive strength during nanoHAP degradation. Figure A2. The SEM micrographs of nanoHAP-PLGA (A) 5000×, (B) 50,000×; (C) Change of the Ca2+ concentration in solution containing nanoHAP granules with time; (D) The rate of nanoHAP degradation during prolonged time period (0–428 h); and, (E) Change of compressive strength during nanoHAP degradation. References References References 1. Boga, J.C.; Miguel, S.P.; de Melo-Diogo, D.; Mendonça, A.G.; Louro, R.O.; Correia, I.J. In Vitro characterization of 3D printed scaffolds aimed at bone tissue regeneration. Colloids Surf. B Biointerfaces 2018, 165 207 218 1. Boga, J.C.; Miguel, S.P.; de Melo-Diogo, D.; Mendonça, A.G.; Louro, R.O.; Correia, I.J. In Vitro characterization of 3D printed scaffolds aimed at bone tissue regeneration. Colloids Surf. B Biointerfaces 2018, 165, 207–218. [CrossRef] 165, 207–218. 2. Erasmus, E.P.; Sule, R.; Johnson, O.T.; Massera, J.; Sigalas, I. In Vitro evaluation of porous borosilicate, borophosphate and phosphate bioactive glasses scaffolds fabricated using foaming agent for bone regeneration Sci Rep 2018 8 3699 2. Erasmus, E.P.; Sule, R.; Johnson, O.T.; Massera, J.; Sigalas, I. In Vitro evaluation of porous borosilicate, borophosphate and phosphate bioactive glasses scaffolds fabricated using foaming agent for bone regeneration. Sci. Rep. 2018, 8, 3699. [CrossRef] 165, 207–218. 2. Erasmus, E.P.; Sule, R.; Johnson, O.T.; Massera, J.; Sigalas, I. In Vitro evaluation of porous borosilicate, borophosphate and phosphate bioactive glasses scaffolds fabricated using foaming agent for bone 2. Erasmus, E.P.; Sule, R.; Johnson, O.T.; Massera, J.; Sigalas, I. In Vitro evaluation of porous borosilicate, borophosphate and phosphate bioactive glasses scaffolds fabricated using foaming agent for bone regeneration. Sci. Rep. 2018, 8, 3699. [CrossRef] regeneration. Sci. Rep. 2018, 8, 3699. 3. Jeon, O.H.; Elisseeff, J. Orthopedic tissue regeneration: Cells, scaffolds, and small molecules. Drug Deliv. g p [ ] 3. Jeon, O.H.; Elisseeff, J. Orthopedic tissue regeneration: Cells, scaffolds, and small molecules. Drug Deliv. Transl. Res. 2016, 6, 105–120. [CrossRef] regeneration. Sci. Rep. 2018, 8, 3699. 3. Jeon, O.H.; Elisseeff, J. Orthopedic tissue regeneration: Cells, scaffolds, and small molecules. Drug Deliv. l 3. Jeon, O.H.; Elisseeff, J. Orthopedic tissue regeneration: Cells, scaffolds, and small molecules. Drug Deliv. Transl. Res. 2016, 6, 105–120. [CrossRef] Transl. Res. 2016, 6, 105–120. 4. Tohamy, K.M.; Mabrouk, M.; Soliman, I.E.; Beherei, H.H.; Aboelnasr, M.A. Novel alginate/hydroxyethyl cellulose/hydroxyapatite composite scaffold for bone regeneration: In Vitro cell viability and proliferation of human mesenchymal stem cells Int J Biol Macromol 2018 112 448 460 4. Tohamy, K.M.; Mabrouk, M.; Soliman, I.E.; Beherei, H.H.; Aboelnasr, M.A. Novel alginate/hydroxyethyl cellulose/hydroxyapatite composite scaffold for bone regeneration: In Vitro cell viability and proliferation of human mesenchymal stem cells. Int. J. Biol. Macromol. 2018, 112, 448–460. [CrossRef] Transl. Res. 2016, 6, 105–120. 4. Tohamy, K.M.; Mabrouk, M.; Soliman, I.E.; Beherei, H.H.; Aboelnasr, M.A. References References Novel alginate/hydroxyethyl cellulose/hydroxyapatite composite scaffold for bone regeneration: In Vitro cell viability and proliferation of human mesenchymal stem cells Int J Biol Macromol 2018 112 448–460 4. Tohamy, K.M.; Mabrouk, M.; Soliman, I.E.; Beherei, H.H.; Aboelnasr, M.A. Novel alginate/hydroxyethyl cellulose/hydroxyapatite composite scaffold for bone regeneration: In Vitro cell viability and proliferation of human mesenchymal stem cells. Int. J. Biol. Macromol. 2018, 112, 448–460. [CrossRef] 19 of 21 19 of 21 Nanomaterials 2020, 10, 918 5. Liu, X.; Zhao, K.; Gong, T.; Song, J.; Bao, C.; Luo, E.; Weng, J.; Zhou, S. Delivery of growth factors using a smart porous nanocomposite scaffold to repair a mandibular bone defect. Biomacromolecules 2014, 15, 1019–1030. [CrossRef] 6. Huang, W.; Shi, X.; Ren, L.; Du, C.; Wang, Y. PHBV microspheres—PLGA matrix composite scaffold f tissue engineering. Biomaterials 2010, 31, 4278–4285. [CrossRef] 7. Hutmacher, D.W. Scaffolds in tissue engineering bone and cartilage. Biomaterials 2000, 21, 2529–2543. [CrossRef] 8. Giannoudis, P.V.; Dinopoulos, H.; Tsiridis, E. Bone substitutes: An update. Injury 2005, 36, S20–S27. [CrossRef] 9. Pandey, A.; Midha, S.; Sharma, R.K.; Maurya, R.; Nigam, V.K.; Ghosh, S.; Balani, K. Antioxidant and antibacterial hydroxyapatite-based biocomposite for orthopedic applications. Mater. Sci. Eng. C Mater. Biol. Appl. 2018, 88, 13–24. [CrossRef] 10. Boehler, R.M.; Shin, S.; Fast, A.G.; Gower, R.M.; Shea, L.D. A PLG/HAp composite scaffold for lentivirus delivery. Biomaterials 2013, 34, 5431–5438. [CrossRef] [PubMed] 11. Dau, M.; Ganz, C.; Zaage, F.; Staedt, H.; Goetze, E.; Gerber, T.; Kämmerer, P.W. In Vivo comparison of a granular and putty form of a sintered and a non-sintered silica-enhanced hydroxyapatite bone substitute material. J. Biomater. Appl. 2019, 088532821987758. [CrossRef] 12. Wang, M. Developing bioactive composite materials for tissue replacement. Biomaterials 2003, 24, 2133–2151. [CrossRef] 13. Jokanovi´c, V.; ˇColovi´c, B.; Markovi´c, D.; Petrovi´c, M.; Jokanovi´c, M.; Milosavljevi´c, P.; Sopta, J. In Vivo investigation of ALBO-OS scaffold based on hydroxyapatite and PLGA. J. Nanomater. 2016, 2016, 1–10. [CrossRef] 14. Jokanovi´c, V.; ˇColovi´c, B.; Markovi´c, D.; Petrovi´c, M.; Soldatovi´c, I.; Antonijevi´c, D.; Milosavljevi´c, P.; Sjerobabin, N.; Sopta, J. Extraordinary biological properties of a new calcium hydroxyapatite/poly (lactide-co-glycolide)-based scaffold confirmed by in Vivo investigation. Biomed. Eng. Biomed. Tech. 2017, 62, 295–306. [CrossRef] 15. Sjerobabin, N.; ˇColovi´c, B.; Petrovi´c, M.; Markovi´c, D.; Živkovi´c, S.; Jokanovi´c, V. Cytotoxicity investigation of a new hydroxyapatite scaffold with improved structural design. Srp. Arh. Celok. Lek. 2016, 144, 280–287. [CrossRef] 16. Parasuraman, S. Toxicological screening. J. Pharmacol. Pharmacother. 2011, 2, 74. [CrossRef] 17. References References Part B Appl. Biomater. 2018, 106, 1799–1808. [CrossRef] 27. Tan, Y.-J.; Ren, Y.-S.; Gao, L.; Li, L.-F.; Cui, L.-J.; Li, B.; Li, X.; Yang, J.; Wang, M.-Z.; Lv, Y.-Y.; et al. 28-day oral chronic toxicity study of arctigenin in rats. Front. Pharmacol. 2018, 9, 1077. [CrossRef] 28. He, Y.; Tao, H.; Zhang, Y.; Jiang, Y.; Zhang, S.; Zhao, C.; Li, J.; Zhang, B.; Song, Y.; Zhang, X. Biocompatibility of bio-Mg-Zn alloy within bone with heart, liver, kidney and spleen. Sci. Bull. 2009, 54, 484–491. [CrossRef] 29. Khalil, W.A.; Eid, N.F. Biocompatibility of BioAggregate and mineral trioxide aggregate on the liver and kidney. Int. Endod. J. 2013, 46, 730–737. [CrossRef] 30. Gerlach, C.; Sakkab, D.Y.; Scholzen, T.; Daßler, R.; Alison, M.R.; Gerdes, J. Ki-67 expression during rat liver regeneration after partial hepatectomy. Hepatology 1997, 26, 573–578. [CrossRef] 31. Sobecki, M.; Mrouj, K.; Camasses, A.; Parisis, N.; Nicolas, E.; Llères, D.; Gerbe, F.; Prieto, S.; Krasinska, L.; David, A.; et al. The cell proliferation antigen Ki-67 organises heterochromatin. eLife 2016, 5, e13722. [CrossRef] 32. Paraš, S.; Jankovi´c, O.; Triši´c, D.; ˇColovi´c, B.; Mitrovi´c-Ajti´c, O.; Deki´c, R.; Soldatovi´c, I.; Živkovi´c Sandi´c, M.; Živkovi´c, S.; Jokanovi´c, V. Influence of nanostructured calcium aluminate and calcium silicate on the liver: Histological and unbiased stereological analysis. Int. Endod. J. 2019, 52, 1162–1172. 33. Paranjpe, S.; Bowen, W.C.; Tseng, G.C.; Luo, J.H.; Orr, A.; Michalopoulos, G.K. RNA interference against hepatic epidermal growth factor receptor has suppressive effects on liver regeneration in rats. Am. J. Pathol. 2010, 176, 2669–2681. [CrossRef] 34. Braet, F.; Wisse, E. Structural and functional aspects of liver sinusoidal endothelial cell fenestrae: A review. Comp. Hepatol. 2002, 1, 1. [CrossRef] 35. Shah, V.; Haddad, F.G.; Garcia-Cardena, G.; Frangos, J.A.; Mennone, A.; Groszmann, R.J.; Sessa, W.C. Liver sinusoidal endothelial cells are responsible for nitric oxide modulation of resistance in the hepatic sinusoids. J. Clin. Investig. 1997, 100, 2923–2930. [CrossRef] 36. Jokanovi´c, V.; ˇColovi´c, B.; Proki´c, B.B.; Tomanovi´c, N.; Popovi´c Baji´c, M.; Živkovi´c, S. Subchronic Systemic toxicity of new endodontic material based on calcium hydroxyapatite and calcium silicates. Adv. Mater. Sci. Eng. 2018, 2018, 8493439. [CrossRef] 37. Demirkaya, K.; Can Demirdö˘gen, B.; Öncel Torun, Z.; Erdem, O.; Çetinkaya, S.; Akay, C. In Vivo evaluation of the effects of hydraulic calcium silicate dental cements on plasma and liver aluminium levels in rats. Eur. J. Oral Sci. 2016, 124, 75–81. [CrossRef] 38. References References Strober, W. Trypan blue exclusion test of cell viability. In Current Protocols in Immunology; John Wiley & Sons, Inc.: Hoboken, NJ, USA, 2001; Volume Appendix 3, p. Appendix 3B. 18. Tice, R.R.; Agurell, E.; Anderson, D.; Burlinson, B.; Hartmann, A.; Kobayashi, H.; Miyamae, Y.; Rojas, E.; Ryu, J.C.; Sasaki, Y.F. Single cell gel/comet assay: Guidelines for In Vitro and In Vivo genetic toxicology testing. Environ. Mol. Mutagen. 2000, 35, 206–221. [CrossRef] 19. Nestorovic, N.; Trifunovic, S.; Jaric, I.; Manojlovic-Stojanoski, M.; Ristic, N.; Filipovic, B.; Sosic-Jurjevic, B.; Milosevic, V. Sex steroid application reverses changes in rat castration cells: Unbiased stereological analysis. Arch. Biol. Sci. 2016, 68, 821–828. [CrossRef] 20. Santos, M.; Marcos, R.; Santos, N.; Malhão, F.; Monteiro, R.A.F.; Rocha, E. An unbiased stereological study on subpopulations of rat liver macrophages and on their numerical relation with the hepatocytes and stellate cells. J. Anat. 2009, 214, 744–751. [CrossRef] 21. Pridans, C.; Sauter, K.A.; Irvine, K.M.; Davis, G.M.; Lefevre, L.; Raper, A.; Rojo, R.; Nirmal, A.J.; Beard, P.; Cheeseman, M.; et al. Macrophage colony-stimulating factor increases hepatic macrophage content, liver growth, and lipid accumulation in neonatal rats. Am. J. Physiol. Liver Physiol. 2018, 314, G388–G398. [CrossRef] 22. Wahab, N.F.A.C.; Kannan, T.P.; Mahmood, Z.; Rahman, I.A.; Ismail, H. Genotoxicity assessment of biphasic calcium phosphate of modified porosity on human dental pulp cells using Ames and Comet assays. Toxicol. Vitro 2018, 47, 207–212. [CrossRef] 23. ˙Zywicka, B.; Kruci´nska, I.; Garcarek, J.; Szymonowicz, M.; Komisarczyk, A.; Rybak, Z. Biological properties of low-toxic PLGA and PLGA/PHB fibrous nanocomposite scaffolds for osseous tissue regeneration. Evaluation of potential bioactivity. Molecules 2017, 22, 1852. [CrossRef] 20 of 21 20 of 21 Nanomaterials 2020, 10, 918 24. Opaˇci´c-Gali´c, V.; Petrovi´c, V.; Živkovi´c, S.; Jokanovi´c, V.; Nikoli´c, B.; Kneževi´c-Vukˇcevi´c, J.; Miti´c- ´Culafi´c, D. New nanostructural biomaterials based on active silicate systems and hydroxyapatite: Characterization and genotoxicity in human peripheral blood lymphocytes. Int. Endod. J. 2013, 46, 506–516. [CrossRef] 25. Petrovi´c, V.; Opaˇci´c-Gali´c, V.; Živkovi´c, S.; Nikoli´c, B.; Danilovi´c, V.; Mileti´c, V.; Jokanovi´c, V.; Miti´c- ´Culafi´c, D. Biocompatibility of new nanostructural materials based on active silicate systems and hydroxyapatite: In Vitro and in Vivo study. Int. Endod. J. 2015, 48, 966–975. [CrossRef] 26. De Almeida, A.D.; Leite, F.G.; Chaud, M.V.; de Rebelo, M.A.; de Borges, L.C.F.S.; Viroel, F.J.M.; Hataka, A.; Grotto, D. Safety and efficacy of hydroxyapatite scaffold in the prevention of jaw osteonecrosis in Vivo. J. Biomed. Mater. Res. References References You, Z.; Xin, Y.; Liu, Y.; Han, B.; Zhang, L.; Chen, Y.; Chen, Y.; Gu, L.; Gao, H.; Xuan, Y. Protective effect of Salvia Miltiorrhizae injection on N(G)-nitro-d-arginine induced nitric oxide deficient and oxidative damage in rat kidney. Exp. Toxicol. Pathol. 2012, 64, 453–458. [CrossRef] 9. Wang, Y.; Zhu, Z.; He, Y.; Jiang, Y.; Zhang, J.; Niu, J.; Mao, L.; Yuan, G. In Vivo degradation behavior biocompatibility of Mg-Nd-Zn-Zr alloy at early stage. Int. J. Mol. Med. 2012, 29, 178–184. 0. Fray, J.C.S. Stretch receptor model for renin release with evidence from perfused rat kidney. Am. J. Phy 1976, 231, 936–944. [CrossRef] 41. Gui, S.; Zhang, Z.; Zheng, L.; Cui, Y.; Liu, X.; Li, N.; Sang, X.; Sun, Q.; Gao, G.; Cheng, Z.; et al. Molecular mechanism of kidney injury of mice caused by exposure to titanium dioxide nanoparticles. J. Hazard. Mater. 2011, 195, 365–370. [CrossRef] 42. Scholz, H.; Hamann, M.; Götz, K.H.; Kurtz, A. Role of calcium ions in the pressure control of renin secretion from the kidneys. Pflugers Arch. 1994, 428, 173–178. [CrossRef] [PubMed] 43. Lichtman, A.H.; Segel, G.B.; Lichtman, M.A. The role of calcium in lymphocyte proliferation. Blood 1983, 61, 413–422. [CrossRef] [PubMed] 21 of 21 Nanomaterials 2020, 10, 918 44. McCrady, C.W.; Ely, C.M.; Westin, E.; Carchman, R.A. Coordination and reversibility of signals for proliferative activation and interleukin-2 mRNA production in resting human T lymphocytes by phorbol ester and calcium ionophore. J. Biol. Chem. 1988, 263, 18537–18544. 45. Han, A.Y.; Zhang, M.H.; Zuo, X.L.; Zheng, S.S.; Zhao, C.F.; Feng, J.H.; Cheng, C. Effect of acute heat stress on calcium concentration, proliferation, cell cycle, and interleukin-2 production in splenic lymphocytes from broiler chickens. Poult. Sci. 2010, 89, 2063–2070. [CrossRef] [PubMed] 46. Bronte, V.; Pittet, M.J. The spleen in local and systemic regulation of immunity. Immunity 2013, 39, 806–818. [CrossRef] 47. Lee, H.B.; Blaufox, M.D. Blood volume in the rat. J. Nucl. Med. 1985, 26, 72–76. 48. Huang, Y.X.; Ren, J.; Chen, C.; Ren, T.B.; Zhou, X.Y. Preparation and properties of poly(lactide-co-glycolide) (PLGA)/ Nano-Hydroxyapatite (NHA) scaffolds by thermally induced phase separation and rabbit MSCs culture on scaffolds. J. Biomater. Appl. 2008, 22, 409–432. [CrossRef] © 2020 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/). © 2020 by the authors. Licensee MDPI, Basel, Switzerland. References References This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/). © 2020 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
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СПЕЦИФИКА ПОСТКОЛОНИАЛЬНЫХ ИССЛЕДОВАНИЙ В БЕЛАРУСИ
Modern engineering and innovative technologies
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Modern engineering and innovative technologies Issue 6 / Part 4 http://www.moderntechno.de/index.php/meit/article/view/meit06-04-069 DOI: 10.30890/2567-5273.2018-06-04-069 УДК 141.572 SPECIFICATION OF POST-COLLATIONAL RESEARCH IN BELARUS СПЕЦИФІКА ПОСТКОЛОНІАЛЬНИХ ДОСЛІДЖЕНЬ У БІЛОРУСІ Voropayeva T S / Воропаєва Т С Voropayeva T.S. / Воропаєва Т.С. к.психол.н., доц. / c.p.s., as.prof. ORCID: 0000-0001-8388-7169 Taras Shevchenko National University of Kyiv, Kyiv, Volodymyrska Street 60, 01601 Київський національний університет імені Тараса Шевченка, Київ, вул. Володимирська 60, 01601 Анотація. Стаття присвячена вивченню специфіки постколоніальних досліджень у Білорусії. У статті досліджуються проблеми розвитку постколоніальної теорії, виникнення якої обумовлено найважливішими історичними реаліями ХХ століття – розпадом колоніальної системи та утворенням постколоніального простору. Автор розглядає інституційний розвиток сучасних постколоніальних досліджень, а також деякі аспекти адаптації постколоніальної теорії на пострадянському просторі. Теорія постколоніальних досліджень розглядається як відносно нова наукова методологія аналізу пострадянського простору, зі значним евристичним потенціалом для білоруської соціогуманітаристики. У статті розглядається категоріальний статус поняття «постколоніалізм», визначається його сутність і основні риси. Автор аналізує специфічне розуміння постколоніальної реальності в сучасній Білорусі. Основною рисою постколоніального дискурсу в Білорусі є дослідження нових видів культурної та соціальної ідентичності, явищ транзитивності та кордонів, легітимації місцевих національних наративів. У статті аналізується суть сучасної неоколоніальної політики, що проводиться окремими країнами. Акцентується увага на важливості адекватних відповідей, які дає білоруський соціум на історичні виклики сучасної епохи. Крім того, особлива увага приділяється перспективам використання постколоніальної стратегії для Білорусі. Ключові слова: колоніалізм, постколоніалізм, постколоніальні дослідження, деколонізація, Білорусь. Вступ. ISSN 2567-5273 Issue 6 / Part 4 Нідерландах, Німеччині, США та в інших країнах. Окрім західних розвідок, доволі відомими є також південно-азійські дослідження субалтернів (Subaltern studies), які започаткували процес вивчення різноманітних «Інших» (яким у європейській традиції було відмовлено у праві голосу), а також латиноамериканські дослідження проблем колективної й індивідуальної ідентичності та специфіки політико-правових й соціально-економічних аспектів ситуації у різних постколоніальних країнах. Результати постколоніальних досліджень публікуються у цілому ряді спеціалізованих журналів, серед яких «Journal of Postcolonial writing», «Interventions: International Journal of Postcolonial Studies», «Journal of Postcolonial Europe», «Ab Imperio» та ін. p p Отже, виникнення постколоніальної теорії обумовлено найважливішими історичними реаліями ХХ століття – розпадом колоніальної системи та утворенням постколоніального простору. Ці зміни привели до започаткування колективної рефлексії над колоніальним досвідом як у колишніх колоніальних імперіях, так і в колишніх колоніях, заклавши основу для формування інтелектуальних постулатів, принципів і установок, які стали теоретичним фундаментом постколоніальних досліджень. Упродовж кінця ХХ – початку ХХІ ст. відбувався активний інституційний розвиток сучасних постколоніальних досліджень, теорія постколоніальних досліджень стала відносно новою науковою методологією аналізу пострадянського простору, зі значним евристичним потенціалом для білоруської соціогуманітаристики, зокрема. Вступ. у Відомо, що упродовж останніх 20 – 27 років у науковому середовищі нових незалежних держав тривають дискусії щодо можливості/неможливості перенесення постколоніальної теорії на досвід пострадянських країн [5, с. 116- 125]. У центрі цих дискусій стоїть питання про можливість застосування термінів «колонізація», «деколонізація» та інших до досвіду Російської імперії та СРСР, а також питання про те, чи доцільно називати пострадянський простір постколоніальним. Перші міркування на цю тему з’явились у ЗМІ уже в перші місяці після краху СРСР. Зокрема, 7 лютого 1992 року А. Празаускас зазначив у часописі «Независимая газета», що СРСР «силою і за допомогою тотального контролю утримував разом різноплемінний світ, своєрідний євразійський паноптикум народів, які не мали між собою нічого спільного, окрім родових властивостей Homo Sapiens і штучно створених лих», підкреслюючи, що на місці СРСР утворився постколоніальний простір із характерними для подібних соціумів проблемами [4]. Сьогодні постколоніальні дослідження є загальносвітовим феноменом, адже відповідні наукові центри існують в Австралії, Великій Британії, ISSN 2567-5273 Technical sciences 100 Modern engineering and innovative technologies Issue 6 / Part 4 Основний текст. А. Матвеєнко підкреслює, що в сучасному білоруському гуманітарному дискурсі актуалізується пошук нових дослідницьких стратегій і програм. Домінуючим напрямком є вивчення культурних феноменів з використанням міждисциплінарних підходів західної культурної антропології та культурних досліджень (Cultural Studies); поступово адаптується постколоніальна теорія у рамках білоруської соціогуманітаристики; раніше недосліджені або мало вивчені соціокультурні практики стають предметом дослідження, що веде до якісного зростання наукового знання та поповнення інтелектуального інструментарію білоруської науки [3, с. 69-72]. ру р ру у [ На думку відомого білоруського дослідника І. Бобкова, «постколоніальні дослідження, постколоніальні студії» – це «сукупність методологічно й дисциплінарно гетерогенних, але тематично взаємопов’язаних концептуальних дискурсів, які усвідомлюють себе в єдиній рамці (мережі) критичних проектів і програм, спрямованих на подолання наслідків економічної, політичної, але перш за все культурної та інтелектуальної залежності "незахідного світу" від "західних" зразків і прототипів» [2, с. 597]. Автор підкреслює, що «у країнах Західної Європи і Північної Америки постколоніальні дослідження локалізовані переважно в академічних та університетських межах і набувають форми наукової теорії – "постколоніальних студій"» [2, с. 597]. Вчений зазначає, що у незахідному світі постколоніальні студії «реалізуються насамперед через літературну творчість і есеїстську критику. ... Прийнято вважати, що "вибух постколоніальності" стався у 1979 році, після виходу в світ книги Е. Саїда ISSN 2567-5273 Technical sciences ISSN 2567-5273 101 Modern engineering and innovative technologies Issue 6 / Part 4 "Орієнталізм"» [2, с. 597]. Дослідник підкреслює, що формально слово «постколоніальний» означає часовий період – період «після колоніалізму», що зазвичай інтерпретується як період після моменту здобуття незалежності тією чи іншою країною. І. Бобков стверджує, що дослідницькі групи, які орієнтуються на постколоніальні типи дискурсів, існують і на пострадянському просторі, в першу чергу, в Білорусі та Україні. р р р у р у ру р А. Матвеєнко, підтримуючи думку І. Бобкова, зазначає, що під «західним» впливом маються на увазі «не економічні аспекти, а сфера знання, зокрема проекти Просвітництва й Модерну, критичним переосмисленням яких багато в чому став постмодернізм. Одна з базових ідей стратегії постколоніальних досліджень полягає в тому, що сучасні соціокультурні освіти розглядаються як радикально детерміновані минулим історичним досвідом та ідеологічним контекстом, які часто не здатні розвиватися поза заданими метрополією алгоритмами і парадигмами. Ключовою особливістю є те, що такий вплив постає в латентній формі, не проявляє себе у вигляді відкритої і явної експлікації» [3, с. 73-75]. ISSN 2567-5273 Technical sciences Основний текст. Автор підкреслює, що латентний парадигмальний зв’язок метрополії і периферії незмінно вносить обмеження в еволюцію «залежної» соціокультурної системи, не дозволяючи їй конструктивно використовувати адаптивні механізми й практики, які з мінімальними втратами знімають ризики конфліктів і напруженості в соціумі [3, с. 69-75]. На думку А. Матвеєнка, «найбільший інтерес представляють перспективи постколоніальної стратегії саме для Білорусі – для розуміння її історії та культури, реального стану й формування образу майбутнього. В силу багатьох причин, однією з яких є відносно недавнє отримання Республікою Білорусь статусу незалежної суверенної держави на міжнародній арені, набули особливої важливості для молодої країни питання самолегітимації і самоконцептуалізаціі, пошуку ідентичностей та реконструкції культурних і історичних реалій, які привели до формування білорусів як нації». Цей концептуальний порядок денний «багато в чому, якщо не повністю, збігається з основним змістом постколоніального дискурсу, ... центральними темами постколоніальних досліджень стали питання націоналізму, орієнталізму, саморепрезентації, культурної ідентичності і мультикультурної особистості» [3, с. 73], постколоніальні дослідження зосередилися також на проблемах кризи ідентичності, викликаної ситуацією «прикордоння», звернення до своєї національної культури та цінностей [3, с. 69-75]. Спільними для білоруських вчених є такі дослідницькі інтереси: вивчення феноменів пограничності, транзитивності, особливостей співіснування соціокультурних систем, а також розвиток полікультурного простору на основі міжетнічної та міжконфесійної взаємодії. Суперечливі й неоднозначні тлумачення та інтерпретації історичних подій на території Білорусі мають спільну канву: Білорусь формувалась у складних геополітичних умовах цивілізаційного протистояння Заходу і Сходу, яке не завжди мало мирний характер і нерідко приводило до ескалації довготривалих військових конфліктів. Ця специфічна ситуація бачиться «як простір зіткнення цивілізацій, західно-латинської та православно-європейської, зіткнення, яке ISSN 2567-5273 Technical sciences Technical sciences 102 Modern engineering and innovative technologies Issue 6 / Part 4 призводить не до розлому або провалу, а утворює особливу конфігурацію цивілізаційної накладки, коли межа західно-латинських впливів збігається із східним кордоном Білорусі, а православно-візантійських – із західним» [1, с. 39]. Подібне існування своєрідної буферної міжцивілізаційної зони, на думку А. Матвеєнка, не могло б не призвести до утворення особливої конфігурації соціокультурних практик та ідейно-ідеологічних цінностей, установок та ідеалів, які і зараз формують національний наратив у всьому його багатстві й самобутності [3, с. 69-75]. у [ Варто звернути увагу на особливий інтерес білоруських інтелектуалів до тлумачення Білорусі як своєрідного соціокультурного порубіжжя [6], що яскраво проявляється у діяльності Науково-дослідного Центру перспективних наукових досліджень і освіти в галузі соціальних і гуманітарних наук, який видає журнал «Перехрестя» [7]. Основний текст. Окремі закономірності становлення й трансформації соціокультурних систем та соціокультурної динаміки загалом, що були теоретично розроблені й концептуально оформлені у рамках білоруських постколоніальних досліджень, пройшли різні етапи верифікації і на даний момент підтверджуються емпіричними, статистичними та іншими даними. Таким чином, коректне використання стратегії постколоніальних студій в наукових дослідженнях має прогностичний потенціал, що дозволяє з досить високою точністю передбачати як негативні, так і позитивні результати тих чи інших прийнятих рішень, знаходити причинно-наслідкові зв’язки в подіях і явищах, які часто здаються простим збігом обставин [3, с. 69-75]. ISSN 2567-5273 Висновки. Отже, у статті було розглянуто категоріальний статус поняття «постколоніалізм», визначена його сутність і основні риси, проаналізовано специфічне розуміння постколоніальної реальності в сучасній Білорусі. Було з’ясовано, що основною рисою постколоніального дискурсу в Білорусі є дослідження нових видів культурної та соціальної ідентичності, явищ транзитивності й порубіжності, легітимації національних наративів тощо. Аналізуючи справедливе твердження І. Бобкова про спрямованість постколоніальних досліджень на подолання наслідків економічної, політичної, але, перш за все, культурної та інтелектуальної залежності «незахідного світу» від «західних» зразків і прототипів» варто зауважити, що і Білорусь, і Україна були географічно розташовані на заході та південному заході як Російської, так і Радянської імперій, тому білоруські й українські постколоніальні студії, в першу чергу, мають бути спрямовані на подолання наслідків економічної, політичної, культурної та інтелектуальної залежності населення західних та південно-західних (європейських) територій від нав’язаних їм незахідних зразків і прототипів. р р В грудні 2018 року, після загострення білорусько-російських відносин на тлі чергових складних переговорів Президента РФ В. Путіна і Президента Білорусі О. Лукашенка, для громадян Білорусі значно актуалізувалась проблема сучасної неоколоніальної політики, адже в російському уряді вирішили «бити білоруську карту» і почали апелювати до букви договору про Союзну державу ISSN 2567-5273 Technical sciences Technical sciences 103 Modern engineering and innovative technologies Issue 6 / Part 4 Росії та Білорусі, де, крім «рівних умов», передбачені поява єдиної валюти, створення спільних митних органів, судової системи і фактичне об’єднання двох країн. І політики, і експерти підкреслюють, що злиття двох держав дозволить В. Путіну вирішити «проблему 2024», коли він просто очолить Союзну державу, в якій Білорусь фактично стане одним із суб’єктів Російської Федерації. Після цього дедалі голосніше почали лунати заяви і про «повернення СНД до складу Росії». Росії та Білорусі, де, крім «рівних умов», передбачені поява єдиної валюти, створення спільних митних органів, судової системи і фактичне об’єднання двох країн. І політики, і експерти підкреслюють, що злиття двох держав дозволить В. Путіну вирішити «проблему 2024», коли він просто очолить Союзну державу, в якій Білорусь фактично стане одним із суб’єктів Російської Федерації. Після цього дедалі голосніше почали лунати заяви і про «повернення СНД до складу Росії». Таким чином, сьогодні надзвичайно важливою є наявність адекватних відповідей, які мусить дати білоруський народ на історичні виклики постколоніальної доби. Крім цього, особливу увагу варто приділяти перспективам використання постколоніальних та деколоніальних стратегій для подальшого цивілізаційного поступу Білорусі. Література: Література: 1. Бабкоў І. М. Гісторыя беларускай думкі: метадалогія, дысцыплінарнасць, канон // Национальная философия в современном мире : сб. ст. / Ин-т философии НАН Беларуси. – Минск, 2010. – С. Висновки. 38-49. 2. Бобков И. М. Постколониальные исследования // Постмодернизм : энцикл. / сост. и науч. ред.: А. А. Грицанов, М. А. Можейко. – Минск : Интерпрессервис : Кн. дом, 2001. – С. 597-598. 2. Бобков И. М. Постколониальные исследования // Постмодернизм : энцикл. / сост. и науч. ред.: А. А. Грицанов, М. А. Можейко. – Минск : Интерпрессервис : Кн. дом, 2001. – С. 597-598. р р р 3. Матвеенко А. Г. Постколониальные исследования: проблемы и перспективы // Веснік Беларускага дзяржаўнага універсітэта культуры і мастацтваў. – 2016. – №1 (25). – С. 69-75. 3. Матвеенко А. Г. Постколониальные исследования: проблемы и перспективы // Веснік Беларускага дзяржаўнага універсітэта культуры і мастацтваў. – 2016. – №1 (25). – С. 69-75. 4. Празаускас А. СНГ как постколониальное пространство // Независимая газета, Москва; 07.02.1992. – University of Alberta. – [Електронний ресурс]. – Режим доступу: http://www.ualberta.ca/~khineiko/NG 92 93/1141438.htm. 5. Рябчук М. Разновидности колониализма: о возможностях применения постколониальной методологии к изучению посткоммунистической Европы // Политическая концептология. – 2013. – № 3. – С. 116-125. 6. Усманова Э. Восточная Европа как новый подчиненный субъект // Европейская перспектива Беларуси: интеллектуальные модели / Сост. О. Шпарага. – Вильнюс: ЕГУ, 2007. – С. 105-140. 6. Усманова Э. Восточная Европа как новый подчиненный субъект // Европейская перспектива Беларуси: интеллектуальные модели / Сост. О. Шпарага. – Вильнюс: ЕГУ, 2007. – С. 105-140. 7. Филатов А. Идея «пограничья» как политика идентичности // Палітычная сфера. – 2008. – № 10. – С. 39–47. References: f 1. Babkoŭ I. M. (2010). Historyja bielaruskaj dumki: mietadalohija, dyscyplinarnasć, kanon in Natsional'naya filosofiya v sovremennom mire : sb. st. [National Philosophy in the Modern World: Sat. Art.], In-t filosofii NAN Belarusi, Minsk, рр. 38-49. 1. Babkoŭ I. M. (2010). Historyja bielaruskaj dumki: mietadalohija, dyscyplinarnasć, kanon in Natsional'naya filosofiya v sovremennom mire : sb. st. [National Philosophy in the Modern World: Sat. Art.], In-t filosofii NAN Belarusi, Minsk, рр. 38-49. y f f y [ p y World: Sat. Art.], In-t filosofii NAN Belarusi, Minsk, рр. 38-49. рр 2. Bobkov I. M. (2001). Postkolonial'nyye issledovaniya in Postmodernizm: entsiklopediya [Postmodernism: Encyclopedia], sost. i nauch. red.: A. A. Gritsanov, M. A. Mozheyko. – Minsk : Interpresservis : Kn. dom, рр. 597-598. 2. Bobkov I. M. (2001). Postkolonial'nyye issledovaniya in Postmodernizm: entsiklopediya [Postmodernism: Encyclopedia], sost. i nauch. red.: A. A. Gritsanov, M. A. Mozheyko. – Minsk : Interpresservis : Kn. dom, рр. 597-598. p рр 3. Matveyenko A. G. (2016). Postkolonial'nyye issledovaniya: problemy i perspektivy [Postcolonial studies: problems and prospects] in Viesnik Bielaruskaha dziaržaŭnaha univiersiteta kuĺtury i mastactvaŭ [Bulletin of the Belarusian State University of Culture and Arts], No. 1 (25), рр. 69-75. p рр 3. Matveyenko A. G. (2016). Postkolonial'nyye issledovaniya: problemy i perspektivy [Postcolonial studies: problems and prospects] in Viesnik Bielaruskaha dziaržaŭnaha univiersiteta kuĺtury i mastactvaŭ [Bulletin of the Belarusian State University of Culture and Arts], No. 1 (25), рр. 69-75. 4. Prazauskas A. (1992). SNG kak postkolonial'noe prostranstvo [CIS as post-colonial space] ISSN 2567-5273 Technical sciences 104 Modern engineering and innovative technologies Issue 6 / Part 4 Issue 6 / Part 4 in Nezavisimaya gazeta [Nezavisimaya Gazeta], Moscow, 07.02.1992. University of Alberta, URL: http://www.ualberta.ca/~khineiko/NG 92 93/1141438.htm in Nezavisimaya gazeta [Nezavisimaya Gazeta], Moscow, 07.02.1992. University of Alberta, URL: http://www.ualberta.ca/~khineiko/NG 92 93/1141438.htm in Nezavisimaya gazeta [Nezavisimaya Gazeta], Moscow, 07.02.1992 http://www.ualberta.ca/~khineiko/NG 92 93/1141438.htm 5. Ryabchuk M. (2013). Raznovidnosti kolonializma: o vozmozhnostyakh primeneniya postkolonial'noy metodologii k izucheniyu postkommunisticheskoy Evropy [Varieties of colonialism: about the application of postcolonial methodology for the study of post-Communist Europe] in Politicheskaya kontseptologiya [Political Conceptology], No. 3, pp. 116-125. pp p gy y p Europe] in Politicheskaya kontseptologiya [Political Conceptology], No. 3, pp. 116-125 p y p g y p gy pp 6. Usmanova E. (2007). Vostochnaya Evropa kak novyy podchinennyy sub’ekt [Eastern Europe as a new subaltern] in Evropeyskaya perspektiva Belarusi: intellektual'nye modeli [European perspective of Belarus: intellectual patterns]. Sost. O. Shparaga, Vil'nyus, pp. 105-140. References: p y p g y p gy pp 6. Usmanova E. (2007). Vostochnaya Evropa kak novyy podchinennyy sub’ekt [Eastern Europe as a new subaltern] in Evropeyskaya perspektiva Belarusi: intellektual'nye modeli [European perspective of Belarus: intellectual patterns]. Sost. O. Shparaga, Vil'nyus, pp. 105-140. p p p p p g y pp 7. Filatov A. (2008). Ideya «pogranich'ya» kak politika identichnosti [The «borderland» idea as an identity policy] in Palіtychnaya sfera [Political sphere], No.10, pp. 39-47. Abstract. The article is devoted to the study of the specifics of postcolonial studies in Belarus. The article discusses the problems of the development of postcolonial theory, the emergence of which is due to the most important historical realities of the twentieth century – the collapse of the colonial system and the formation of postcolonial space. The author examines the institutional development of modern postcolonial studies, as well as some aspects of the adaptation of postcolonial theory in the post-Soviet space. The theory of postcolonial research is considered as a relatively new scientific methodology for the analysis of the post-Soviet space with a significant heuristic potential for Belarusian social humanities. The article considers the analyses of categorical status of the notion «post-colonialism», specifies its essence and main features. The author analyzes a specific understanding of postcolonial reality in contemporary Belarus. The principal feature of the post-colonial discourse in Belarus is the research of the new types of cultural and social identities, of phenomena of transitivity and border, legitimation of local national narratives. The article analyzes the essence of modern neo-colonial policies pursued by individual countries. The attention is focused on the importance of adequate answers that Belarusian society gives to the historical challenges of the modern era. In addition, special attention to the perspectives of the use of the post-colonial strategy for Belarus. Key words: colonialism, post-colonialism, postcolonial research, decolonization, Belarus. Статья отправлена: 26.12.2018 г. © Воропаева Т.С. ISSN 2567-5273 Technical sciences 105
https://openalex.org/W4313472864
https://journals.iugaza.edu.ps/index.php/IUGJEPS/article/download/12195/4582
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جودة الحياة المدرسية وعلاقتها بالدافعية للتعلم لدى تلاميذ المرحلة الابتدائية في المدارس الأهلية والحكومية بالسعودية
Maǧallaẗ al-ǧāmi'aẗ al-islāmiyyaẗ li-l-dirāsāt al-tarbawiyyaẗ wa-al-nafsiyyaẗ
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IUGJEPS Vol 31, No 1, 2023, pp 180 - 204 IUGJEPS Vol 31, No 1, 2023, pp 180 - 204 IUGJEPS Vol 31, No 1, 2023, pp 180 - 204 IUG Journal of Educational and Psychological Sciences Peer-reviewed Journal of Islamic University-Gaza E-ISSN: 2410-3 P-ISSN: 2410-2 Received on (14-05-2022) Accepted on (21-06-2022) https://doi.org/10.33976/IUGJEPS.31.1/2023/9 The quality of school life and its relationship to the motivation to learn among primary school Pupils in private and government schools in Saudi Arabia Zahraa S. Al Suleiman Psychology of Education Friday Imam Abd al-Rahman bin Faisal, Saudi Arabia *Corresponding Author: Zozobrave5@gmail.com *Corresponding Author: Zozobrave5@gmail.com Abstract: In general, this study aimed to make the relation between the quality of school life and the desire to learn clear among the primary-level Pupils, the researcher used the comparative linking descriptive approach for the purpose of achieving the objectives of the study. The researcher also used the quality of life scale which (Williams and Patten ، 1981) prepared, and the translation of Nawaf al-Osmy (2014), and the motivation scale for learning prepared by Sarayrah (2015), for collecting study data from upper-grade Pupils in primary schools. Moreover, when talking about the study sample, we notice that reached (386) students that they are selected in a simple random way. ( ) y p y Finally, the study leads to a series of results ، most notably: the relation between the quality of school life, the desire to learn, and its sub-dimensions, which represented in (internal & external motivation), among primary-level students is positive correlation. The results show also that there are no statistically significant differences in the level of the quality of school life among the upper grades of primary school putting into consideration the school type variable. The results revealed finally that there are no statistically significant differences in the desire to learn and its sub-dimensions that are represented in (internal & external motivation) at the level of the high schools Pupils in the primary school putting into consideration the school type variable. Finally, the results revealed that there is a clear impact on the quality of school life for learning among pupils of the higher classes in governmental and non-governmental (31.3%)> The researcher introduced many recommendations, most notably: attentions to student activities which contributes to enhance the social relations among students, which in turn contributes to improving the quality of school life side by side ongoing awareness of parents through parents councils which contributes in loving learning among children. Keywords: quality of school life, Motivation to learn and the governmental and non-governmental schools جودة الحياة المدرسية وعالقتها بالدافعية للتعلم لدى تالميذ المرحلة االبتدائية في المدارس األهلية والحكومية بالسعودية زهراء سليمان آل سليمان علم النفس التربية جمعة اإلمام عبد الرحمن بن فيصل المملكة العربية السعودية :امللخص م هدف البحثدإاىباالبف دددااعالالببيندجادةالالحياالبثةدساالودفدادددةدجاتلبدفلدبةدجابذ بذرابدف ا ي ةد الو ذدجا لالد دفليةدج اا لاددد تدف داالبحدس هدجالو ا لبحصدد االالد حس االورسد كاا سالادد تف اا رةسدالحياالبثةساالوفداددةج اا الاىعفليا(تبةس زاتدس ال1981 ()ات ل جانحل الببصددة اا2014) ات رةسداا (لبفلدبةجابذ بذراىعفليالبصدد لة اا2015) ابج عادةسنستالبحثإالو هلايفا ذ ة لتالبصدد ح الببذةسادسوفلددا لالد فليةج اا غ با فة جالبف سم اأ ساعة جا (لبدفدلادددجادردفادذ داا386)ا ذ ةد ااا اا تندفاأاددد البحثدإاعالا ج ح عدجا الالب دسي ا أد زهدس:اا تلحي ا عيندجاا حلحد ا ذلتايالبدجاى صدددسيةدجادةالالحياالبثةدساا لوفداةجاتلبفدلجالبفذةجابذفلدبةجابذ بذراتأدبسيهالب عةجالو هذجايفا(لبفلدبةجالبفلخذةج ا لبفلدبةجالبتسدلةج)ابف ا ي ة الو ذجا لالد فليةج اا ا ساا ّدة االب سي اأن االا حلفاد تقايفا سدد ح اا لحياالبثةساالوفداددةجابف ا ي ة البصدد ح الببذةسادسو ذجا لالد فليةج ااّدسخ ي ا ة انحعالوفداددج كا ىضدسدجاىباا ساادح اا درفاأتضدثاالب سي اأن االا حلفاد تقايفالبفدلجالبفذةجابذفلدبةجابذ بذراتأدبسيهسالب عةجالو هذجايفا(لبفلدبةجالبفلخذةج ا لبفلدبةجالبتسدلةج)ابف ا ي ة البصدد ح الببذةسادسو ذجا لالد فليةج ااّدسخ ي ا ة انحعالوفداددج اً تأخةّ لادرفاا دد االب سي اأ ا ه سكا أثة ًلاتلضددثًسا (بجحياالبثةساالوفداددةجاما سدد ح البفلدبةجابذ بذرابف ا ذ ة لتالبصدد ح الببذةسادسوفلددالبثفح ةجاتلبهذةجادذ اانسددح ا31ك3 )% اا تانف ااا لبحس هجالببفةفا الالب حصدةست اا أد زهس:اا لاله سمادسبن دةجالبةيدةجالب اا سسدسهرايفا بزةزالببينستالالل سعةجادةال اا لبةيب اا ت زةفا الا سد ح الحيااا لبثةساالوفداددةجابفة ر اا بكالب حعةجالوسدد اابتبةساالب حدا الاخيما جسباالادساادأاددسبةعالوبس ذجالبحلبفة جاا لب اا سسددسهرايفا بزةزا سدد ح اا يلدبةجالب بذرابف البد ساك ا :مقدمة وقد يفوق األمر حدود ذلك في بعض الثقافات وذلك باعتبار ال مدارس ،مسؤولة وخاضعة للمساءلة بشأن أداء الطالب"(الكناني2015 .) ( وكشفت نتائج دراسة الكناني2015)عن وجود عالقة ارتباطيه دالة إحصائيًّا بين التحصيل وجودة الحياة المدرسية لدى ّالطالب؛ ألن زيادة جودة الحياة المدرسية تؤدي إلى زيادة التحصيل ،الدراسي(الكناني2015 .) (كما أشارت نتائج دراسة األسود2017 ) إلى وجود عالقة ارتباطية دالة إحصائيًّا بين جودة الحياة والدافعية للتعلم، وأنه يمكن التنبؤ بالدافعية للتعلم من خالل جودة الحياة، كما أظهرت النتائج وجود مستوى مرتفع في كلٍّّ من جودة الحياة والدافعية ل لتعلم تطوير جودة الحياة النفسية وتعزيز الدافعية للتعلم لدى طلبة الجامعة، وقد أوصت الدراسة باعتماد مرشدين بالجامعة يعملون عل أنّ حياة التلميذ العملية تبدأ بتواجده في المدرسة، يمضي فيها وقتًا طويًال يتلقى فيها التربية المناسبة جنبًا إلى جنب مع األسرة لتجعله شخصً ا إيجابيًّا في المجتمع، فإذا لم تكن أركان الحياة المدرسية متكاملة فقد تتأثر دافعية الطفل للتعلم ويتعرض إلى التعثر .األكاديمي مما قد يؤثر على جودة حياته في المستقبل وتُعدّ المدرسة البيئة المناسبة التي تقوم بعملية التربية ونقل الثقافة وتوفير الظروف المناسبة للنمو البدني والعقلي والنفسي واالجتماعي لتلميذاتها، وألنّ التلميذ هو محور العملية التربوية، فإعداده هو الهد ف األسمى للتربية الذي ينبغي أن يكون في قائمة ًأولويات العاملين في المجال المدرسي، وال يتحقق هذا الهدف إالّ بتضافر الجهود بين جميع العاملين في المؤسسة التعليمية ابتداء من اإلدارة وانتهاءً بالمعلم لتوفير بيئة إيجابية مشجعة للتعلم، وتواجه التلميذات في جميع ال مراحل التعليمية مشكالت عديدة تقف ،حائالً دون تحصيلهنّ الدراسي وتكيّفهن االجتماعي ونموهنّ السليم (الرايقي2018 .) أنّ حياة التلميذ العملية تبدأ بتواجده في المدرسة، يمضي فيها وقتًا طويًال يتلقى فيها التربية المناسبة جنبًا إلى جنب مع األسرة لتجعله شخصً ا إيجابيًّا في المجتمع، فإذا لم تكن أركان الحياة المدرسية متكاملة فقد تتأثر دافعية الطفل للتعلم ويتعرض إلى التعثر .األكاديمي مما قد يؤثر على جودة حياته في المستقبل أاأوتُعدّ المدرسة البيئة المناسبة التي تقوم بعملية التربية ونقل الثقافة وتوفير الظروف المناسبة للنمو البدني والعقلي والنفسي من هنا تُعدّ المدرسة واحدة من أهم المؤسسات التي يفترض االهتمام بها والعمل على تحسينها وتطويرها؛ نظ رًا لما لها من أهمية في نقل ثقافة المجتمع وزيادة إنتاجية التالميذ، كما أنّها توفر الظروف المناسبة لنمو شخصيتهم في كافة الجوانب الجسمية والعقلية واالنفعالية واالجتماعية، إالّ أنّ هناك مصادر أخرى ترتبط بالمدرسة، مثل: فرض النظام، واستخدام النقد والسخرية والتج ،اهل واستخدام أساليب التعزيز السّ البة، وفرض المطالب والواجبات الكثيرة التي يستجيب لها التالميذ عادة بتجنّبهم الذهاب للمدرسة وتفقدهم الثقة بالنفس. :مقدمة إنّ المدرسة قد تسهم في خلق التوتر والضيق واالضطراب لدى التالميذ، وذلك بزيادة كثافة الفصول، والقصور في تجهيز م رافق المدرسة، وعدم توفير المساحات المالئمة لألنشطة المتنوعة، وعدم تهيئة المناخ المناسب للمتعلم، كلّ ذلك يسهم ،في إيجاد بيئة غير محبّبة للتالميذ، بل على العكس تكون البيئة مقلقة ومهدّدة لصحة التالميذ النفسية (العسّ اف2008 .) ويتعيّن إذن على نظام التعليم أن يهتم أيضً ً ا بصًقل شًخصًية األفراد وتحقيق طاقاتهم ،الكامنة والعيش في بيئة سًليمة من أجل المسًًًًًاهمة في بناء المجتمع القادر على رفع تحدّيات ،القرن ومن ،هنا ّفإن نجاح المتعلمين ال ينحصًًًًًر فقط في إنجازاتهم المدرسية، بل يتعدّاه إلى تحقيق جودة الحياة في البيئة االجتماعية ،عامة والمدرسية خاصة (Florin 2011) وترى غوترا وآخرون(Ghotra et al, 2016) أنّ خلفية المدرسة هي جزء ال يتجزأ من حياة الطفل، وبالتالي نوعية .المدرسة هو جزء مهم من الجودة الشاملة للحياة التي يمر بها الطفل و لمعرفة مستوى جودة الحياة المدرسية ال بُدّ من قياسها للحكم على مدى جودتها وذلك بعدة طرق، منها: االستبيان، أو .المقابلة للتالميذ أو المعلمين أو القائمين على العملية التربوية عالوة على ذلك "إنّ سبل ووسائل قياس جودة الحياة المدرسية" يختلف باختالف الثقافة التي يتبنّاها المجتمع، فقد تقاس جودة الحياة المدرسية بمراجعة نتائج االمتحانات، أو توضع مستويات محدّدة لألداء وتقويمه في ضوء مؤشرات جودة الحياة المدرسية المعتمدة من قبل الجهات الرسمية المختصة بشؤون التعليم. IUG Journal of Educational and Psychology Sciences (Islamic University of Gaza) / CC BY 4.0 كلمات مفتاحية: جودة الحياة المدرسية، الدافعية للتعلم ، المدارس ال حكومية، المدارس األهلية كلمات مفتاحية: جودة الحياة المدرسية، الدافعية للتعلم ، المدارس ال حكومية، المدارس األهلية 180 IUG Journal of Educational and Psychology Sciences (Islamic University of Gaza) / CC BY 4.0 زهراء سليمان :مقدمة :مقدمة أنّ حياة التلميذ العملية تبدأ بتواجده في المدرسة، يمضي فيها وقتًا طويًال يتلقى فيها التربية المناسبة جنبًا إلى جنب مع األسرة لتجعله شخصً ا إيجابيًّا في المجتمع، فإذا لم تكن أركان الحياة المدرسية متكاملة فقد تتأثر دافعية الطفل للتعلم ويتعرض إلى التعثر .األكاديمي مما قد يؤثر على جودة حياته في المستقبل وتُعدّ المدرسة البيئة المناسبة التي تقوم بعملية التربية ونقل الثقافة وتوفير الظروف المناسبة للنمو البدني والعقلي والنفسي واالجتماعي لتلميذاتها، وألنّ التلميذ هو محور العملية التربوية، فإعداده هو الهد ف األسمى للتربية الذي ينبغي أن يكون في قائمة ًأولويات العاملين في المجال المدرسي، وال يتحقق هذا الهدف إالّ بتضافر الجهود بين جميع العاملين في المؤسسة التعليمية ابتداء من اإلدارة وانتهاءً بالمعلم لتوفير بيئة إيجابية مشجعة للتعلم، وتواجه التلميذات في جميع ال مراحل التعليمية مشكالت عديدة تقف ،حائالً دون تحصيلهنّ الدراسي وتكيّفهن االجتماعي ونموهنّ السليم (الرايقي2018 .) من هنا تُعدّ المدرسة واحدة من أهم المؤسسات التي يفترض االهتمام بها والعمل على تحسينها وتطويرها؛ نظ رًا لما لها من أهمية في نقل ثقافة المجتمع وزيادة إنتاجية التالميذ، كما أنّها توفر الظروف المناسبة لنمو شخصيتهم في كافة الجوانب الجسمية والعقلية واالنفعالية واالجتماعية، إالّ أنّ هناك مصادر أخرى ترتبط بالمدرسة، مثل: فرض النظام، واستخدام النقد والسخرية والتج ،اهل واستخدام أساليب التعزيز السّ البة، وفرض المطالب والواجبات الكثيرة التي يستجيب لها التالميذ عادة بتجنّبهم الذهاب للمدرسة وتفقدهم الثقة بالنفس. :مقدمة وأشًًار ملنتش و بوتيز(Melnic & Botez, 2014) في دراسًًة الدافع للتعلم أنه أوالً وقبل كلّ شًًيء في قرار اختيار مهنة المعلم يجب عليه معرفة كيفية تحفيز طالبه على أنها واحدة من أهم الجوانب، فالطالب غير المتحمّسًًًًًًًًًًًًين لن يتعلّموا بفعّالية، ولن يحتفظوا بالمعلومات ولن يشًًًًاركوا، وقد يصًًًًبم بعضًًًًها مخربًا، وقد يكون الطال ب غير متحمّس لعدة أسًًًًباب: قد يشًًًًعرون بأنهم ال يهتمّون بالموضًًًًًًًًًًًًًًوق، أو يجًدون طرق المعلم غير جذابة، أو قد تصًًًًًًًًًًًًًًرفهم قوى خارجيًة، قد يبًدو أحيًانًا أنّ الطًالب الذي بدا غير متحمّس لديه صعوبة في التعلم ويحتاج إلى عناية خاصة، ويوضم البحث الذي أجري في جامعة "جورج باكوفيا" ح قيقة أنّ الطالب .بدوافع ذاتية يحصلون على نتائج أكاديمية متفوقة حسب النتائج التي أظهرها معامل بيرسون وأشًًار ملنتش و بوتيز(Melnic & Botez, 2014) في دراسًًة الدافع للتعلم أنه أوالً وقبل كلّ شًًيء في قرار اختيار مهنة المعلم يجب عليه معرفة كيفية تحفيز طالبه على أنها واحدة من أهم الجوانب، فالطالب غير المتحمّسًًًًًًًًًًًًين لن يتعلّموا بفعّالية، ولن يحتفظوا بالمعلومات ولن يشًًًًاركوا، وقد يصًًًًبم بعضًًًًها مخربًا، وقد يكون الطال ب غير متحمّس لعدة أسًًًًباب: قد يشًًًًعرون بأنهم ال يهتمّون بالموضًًًًًًًًًًًًًًوق، أو يجًدون طرق المعلم غير جذابة، أو قد تصًًًًًًًًًًًًًًرفهم قوى خارجيًة، قد يبًدو أحيًانًا أنّ الطًالب الذي بدا غير متحمّس لديه صعوبة في التعلم ويحتاج إلى عناية خاصة، ويوضم البحث الذي أجري في جامعة "جورج باكوفيا" ح قيقة أنّ الطالب .بدوافع ذاتية يحصلون على نتائج أكاديمية متفوقة حسب النتائج التي أظهرها معامل بيرسون وتبعًا لذلك يمكن اإلشًًًًًًارة إلى أنّ من يهتم بدراسًًًًًًة عملية التعلم ودافعية الطالب للتعلم ال بُدّ أن يركز اهتمامه على جودة الحياة المدرسًية للتالميذ ويخضًعها للبحث و الدراسًة خاصًة وأنّ الوقت الحاضًر يشًهد كثافة في عدد التالميذ في المدارس الحكومية والخاصًًًًًًة على حدٍّّ سًًًًًًواء، مما قد يؤثر سًًًًًًلبًا على العملية التعليمية إذا لم تكن المدارس مجهّزة بحيث توفر حاجات هؤالء التالميذ ،(العسّ اف2008 .) ّومن هنا تبيّن للباحثة أهمية دراسًًًًًًًًة المتغي رات من أجل التوصًًًًًًًًل لمعرفة العالقة بين نوق المدرسًًًًًًًًة بكلٍّّ من جودة الحياة .المدرسية ودافعية التعلم في المرحلة االبتدائية ا ي :مشكلة البحث :مقدمة إنّ المدرسة قد تسهم في خلق التوتر والضيق واالضطراب لدى التالميذ، وذلك بزيادة كثافة الفصول، والقصور في تجهيز م رافق المدرسة، وعدم توفير المساحات المالئمة لألنشطة المتنوعة، وعدم تهيئة المناخ المناسب للمتعلم، كلّ ذلك يسهم ،في إيجاد بيئة غير محبّبة للتالميذ، بل على العكس تكون البيئة مقلقة ومهدّدة لصحة التالميذ النفسية (العسّ اف2008 .) (اا ي) ويتعيّن إذن على نظام التعليم أن يهتم أيضً ً ا بصًقل شًخصًية األفراد وتحقيق طاقاتهم ،الكامنة والعيش في بيئة سًليمة من أجل المسًًًًًاهمة في بناء المجتمع القادر على رفع تحدّيات ،القرن ومن ،هنا ّفإن نجاح المتعلمين ال ينحصًًًًًر فقط في إنجازاتهم المدرسية، بل يتعدّاه إلى تحقيق جودة الحياة في البيئة االجتماعية ،عامة والمدرسية خاصة (Florin 2011) عالوة على ذلك "إنّ سبل ووسائل قياس جودة الحياة المدرسية" يختلف باختالف الثقافة التي يتبنّاها المجتمع، فقد تقاس جودة الحياة المدرسية بمراجعة نتائج االمتحانات، أو توضع مستويات محدّدة لألداء وتقويمه في ضوء مؤشرات جودة الحياة المدرسية المعتمدة من قبل الجهات الرسمية المختصة بشؤون التعليم. وقد يفوق األمر حدود ذلك في بعض الثقافات وذلك باعتبار ال مدارس ،مسؤولة وخاضعة للمساءلة بشأن أداء الطالب"(الكناني2015 .) أا ي ي() (كما أشارت نتائج دراسة األسود2017 ) إلى وجود عالقة ارتباطية دالة إحصائيًّا بين جودة الحياة والدافعية للتعلم، وأنه يمكن التنبؤ بالدافعية للتعلم من خالل جودة الحياة، كما أظهرت النتائج وجود مستوى مرتفع في كلٍّّ من جودة الحياة والدافعية ل لتعلم لدى طلبة الجامعة، وقد أوصت الدراسة باعتماد مرشدين بالجامعة يعملون على تطوير جودة الحياة النفسية وتعزيز الدافعية للتعلم ،لدى طلبة الجامعة(األسود2017 .) 181 جودة الحياة المدرسية وعالقتها بالدافعية للتعلم لدى تالميذ المرحلة االبتدائية في المدارس األهلية والحكومية بالسعودية زهراء سليمان المدارس األهلية والحكومية بالسعودية ويرى فيريرا وآخرون(Ferreira, 2011) أنه يجب أن ينظر إلى الدافع كعامل مهم جدًّا في عملية التعلم، ح يث يتمتع التلميذ المتحمّس بالقوة الداخلية للتعلم وتحسين األداء األكاديمي والتكيّف مع متطلبات السياق المدرسي، كما أنّ اإلحساس السلبي .للمدرسة له تأثير على الدافع للتعلم ّكما أن الطلبة ذوي الدافعية المرتفعة كان أداؤهم الدراسي أعلى من ذوي الدافعية المنخ ( فضة (Chowdhurly & ويرى فيريرا وآخرون(Ferreira, 2011) أنه يجب أن ينظر إلى الدافع كعامل مهم جدًّا في عملية التعلم، ح يث يتمتع التلميذ المتحمّس بالقوة الداخلية للتعلم وتحسين األداء األكاديمي والتكيّف مع متطلبات السياق المدرسي، كما أنّ اإلحساس السلبي .للمدرسة له تأثير على الدافع للتعلم ّكما أن الطلبة ذوي الدافعية المرتفعة كان أداؤهم الدراسي أعلى من ذوي الدافعية المنخ ( فضة (Chowdhurly & Shahabuddin, 2007 . :مشكلة البحث تتمثل مشًًًًًًكلة البحث في عالقة جودة الحياة المدرسًًًًًًية بالدافعية للتعلم، وفي ظلّ التحدّيات التي تواجه التالميذ في مجال التعليم والناتجة عن التطورات العلمية والتقنية المتالحقة، ومن أجل تحقيق مسًًًتوى أفضًًًل لجودة حياتهم المدرسًًًية، فإننا بحاجة إلى معرفة مستوى دافعيتهم لل .تعلم وعالقته بجودة الحياة المدرسية ومن واقع وجود البًاحثًة في الميًدان التعليمي في المرحلًة االبتًدائيًة، الحظًت تًدنّي دافعيًة التعلم لًدى التلميًذات، وذلًك من خالل: الغياب المتكرر، والتأخر الصًًباحي، وتدنّي االهتمام بالواجبات المنزلية، وضًًعف الحماس وانخفاض الرفبة في التعلم، بينما في السًًًًنوات السًًًًابقة لم تظهر هذه المشًًًًكلة بشًًًًكل كبير بالرغم من أنّ النظام التعليمي في السًًًًابق كان أكثر صًًًًرامة والحياة أكثر ( صًًعوبة؛ لذا قامت الباحثة بتصًًميم اسًًتمارة اسًًتطالق رأي للتأكد من وجود المشًًكلة، ملحق رقم1 )، وطبّقت على تلميذات المرحلة االبتدائي ة (عينة عشوائية بلغت100 تلميذة) لمعرفة مدى دافعيتهنّ للتعلم تتمثل مشًًًًًًكلة البحث في عالقة جودة الحياة المدرسًًًًًًية بالدافعية للتعلم، وفي ظلّ التحدّيات التي تواجه التالميذ في مجال التعليم والناتجة عن التطورات العلمية والتقنية المتالحقة، ومن أجل تحقيق مسًًًتوى أفضًًًل لجودة حياتهم المدرسًًًية، فإننا بحاجة إلى معرفة مستوى دافعيتهم لل .تعلم وعالقته بجودة الحياة المدرسية ومن واقع وجود البًاحثًة في الميًدان التعليمي في المرحلًة االبتًدائيًة، الحظًت تًدنّي دافعيًة التعلم لًدى التلميًذات، وذلًك من خالل: الغياب المتكرر، والتأخر الصًًباحي، وتدنّي االهتمام بالواجبات المنزلية، وضًًعف الحماس وانخفاض الرفبة في التعلم، بينما في السًًًًنوات السًًًًابقة لم تظهر هذه المشًًًًكلة بشًًًًكل كبير بالرغم من أنّ النظام التعليمي في السًًًًابق كان أكثر صًًًًرامة والحياة أكثر ( صًًعوبة؛ لذا قامت الباحثة بتصًًميم اسًًتمارة اسًًتطالق رأي للتأكد من وجود المشًًكلة، ملحق رقم1 )، وطبّقت على تلميذات المرحلة االبتدائي ة (عينة عشوائية بلغت100 تلميذة) لمعرفة مدى دافعيتهنّ للتعلم 182 IUG Journal of Educational and Psychology Sciences (Islamic University of Gaza) / CC BY 4.0 ( جدول رقم1 ) نتائج الدراسة االستطالعية إجمالي عدد الحاالت الحاالت التي حصلت على9 درجات فأعلى النسبة ا لمئوية الحاالت التي ّحصلت على أقل من9 درجات النسبة المئوية الدرجة الكلية 100 44 44 % 56 56 % 17 ( يتضم من الجدول ١ ) أنّ نسبة56 من التلميذات حصلن على أقلّ من% 9 درجات، وتعني أنّ دافعيتهنّ للتعلم جيّدة، وأنّ نسبة 44 من التلميذات حصلن على% 9 درجات فأعلى، وتعني أنّ دافعيتهنّ للتعلم منخفضة، وهي نسبة مرتفعة، وهذا يضعنا أمام سؤال كبير، فما سبب هذا االنخفاض في الدافعية؟ وهل لجودة الحياة المدرسية بنوعيها األهلية أو الحكومية دور في ذلك؟ 182 IUG Journal of Educational and Psychology Sciences (Islamic University of Gaza) / CC BY 4.0 ( جدول رقم1 ) نتائج الدراسة االستطالعية إجمالي عدد الحاالت الحاالت التي حصلت على9 درجات فأعلى النسبة ا لمئوية الحاالت التي ّحصلت على أقل من9 درجات النسبة المئوية الدرجة الكلية 100 44 44 % 56 56 % 17 ( يتضم من الجدول ١ ) أنّ نسبة56 من التلميذات حصلن على أقلّ من% 9 درجات، وتعني أنّ دافعيتهنّ للتعلم جيّدة، وأنّ نسبة 44 من التلميذات حصلن على% 9 درجات فأعلى، وتعني أنّ دافعيتهنّ للتعلم منخفضة، وهي نسبة مرتفعة، وهذا يضعنا أمام سؤال كبير، فما سبب هذا االنخفاض في الدافعية؟ وهل لجودة الحياة المدرسية بنوعيها األهلية أو الحكومية دور في ذلك؟ IUG Journal of Educational and Psychology Sciences (Islamic University of Gaza) / CC BY 4.0 جودة الحياة المدرسية وعالقتها بالدافعية للتعلم لدى تالميذ المرحلة االبتدائية في المدارس األهلية والحكومية بالسعودية زهراء سليمان اا المدارس األهلية والحكومية بالسعودية ( ومن منطلق توصيات بعض الدراسات مثل دراسة العصيمي2014 ) بإجراء بحوث مقترحة في جودة الحياة المدرسية وعالقتها بالدافعية، وتوصية دراسة بيترن(Buterin, 2019) بالتأكيد على أهمية تحسين نوعية الحياة المدرسية وقلّة الدراسات العربية التي ّتناولت هذا المتغيّر التي عز .زت من أهمية عنوان البحث الحالي :وبناءً على ما سبق يمكن تحديد مشكلة البحث في السؤال الرئيسي التالي ما العالقة بين جودة الحياة المدرسية والدافعية للتعلم ؟ :ويتفرق من هذا السؤال عدّة أسئلة 1 . 183 IUG Journal of Educational and Psychology Sciences (Islamic University of Gaz :مشكلة البحث ما العالقة بين جودة الحياة المدرسية والدافعية للتعلم لدى تلميذات ال مدارس(الحكومية- )األهلية في المرحلة االبتدائية؟ 2 . ما الفروق في جودة الحياة المدرسية بين تلميذات المدارس (الحكومية واألهلية)؟ 3 . ما الفروق في الدافعية للتعلم بين تلميذات المدارس (الحكومية واألهلية)؟ أا 3 . ما الفروق في الدافعية للتعلم بين تلميذات المدارس (الحكومية واألهلية)؟ :يهدف البحث الحالي إلى IUG Journal of Educational and Psychology Sciences (Islamic University of Gaza) / CC BY 4.0 :دراسات تناولت جودة الحياة المدرسية ( أجرى العصيمي2014) دراسة هدفت إلى التعرف على العالقة بين جودة الحياة المدرسية وتقدير الذات والتوافق الشخصي واالجتماعي لدى تالميذ المرحلة االبتدائية بالطائف، والتعرف على إمكانية التنبؤ بتقدير الذات والتوافق الشخصي واالجتماعي من خالل إدراك التالميذ لجودة الحياة المدرسية. وتكونت عينة البحث م( ن۳۱۹ ) تلميذًا من تالميذ الصف السادس، واتبع الباحث المنهج ،الوصفي االرتباطي، كما استخدم مقياس جودة الحياة المدرسية من إعداد (وليامز وباتن1981 ) ترجمة الباحث، كما استخدم الباحث معامل ارتباط بيرسون وتحليل االنحدار البسيط لمعالجة فروض الدراسة، وتوصلت النتائج إلى: وجود عالقة دالة إحصائيًّا بين إدراك التالميذ لجودة الحياة المدرسية وتقدير الذات والتوافق الشخصي واالجتماعي، كما وجدت إمكانية التنبؤ بتقدير الذات من خالل إدراك تالميذ المرحلة االبتدائية الجودة الحياة المدرسية، وكذلك وجدت إمكانية التنبؤ بالتوافق الشخصي واالجتماعي من خالل إدراك تالميذ .المرحلة االبتدائية الجودة الحياة المدرسية ا بينما أجرت اينال وصادق(Inal & Sadik, 2014) دراسة هدفت إلى دراسة وجهات نظر المعلمين والتالميذ بعمق فيما ( يتعلق بنوعية حياة المدرسة في مدارس المقاطعة االبتدائية. شارك10 ( ) مدرسين و20 ) تلميذًا في الدراسة، واعتمد تحليل البيانات التي تم جمعها من خالل التحليل الوصفي للمقابلة، ثم استخدام تحليل المحتوى، كشفت نتائج الدراسة أنّ مشاعر التالميذ المشاركين حول المدرسة إيجابية، راضون عن أجواء الصداقة والفرص التعليمية، في حين أنهم غير راضين عن بعض سلوكيات اإلدارة المدرسية والمعلمين والتالميذ، في حين أنّ المعلمين المشاركين وجدوا نوعية الحياة المدرسية منخفضة، سلّطوا الضوء على البنية التحتية للمدرسة، مستوى التالميذ األكاديمي، واإلخفاقات األكاديمية وبعض المسؤوليات اإلضافية بسبب خصائص المدرسة الداخلية؛ وكان رأي المعلمين اآلخرين ذوي اإلدراك اإليجابي أكثر ارتياحًا للمرافق المادية للمدرسة، وأجواء الصداقة والموقف اإليجابي إلدارة المدر .سة ( وأجرى الكناني2015 ) دراسة هدفت إلى التعرف على العالقة بين جودة الحياة المدرسية والتحصيل الدراسي لدى طالب المرحلة الثانوي ة. واستخدمت الدراسة المنهج الوصفي االرتباطي، والمنهج السببي المقارن. وتمثلت أدوات الدراسة في مقياس جودة الحياة المدرسية من إعداد الباحث، وتم التحقق من صدق وثبات المقياس. :يهدف البحث الحالي إلى جودة الحياة المدرسية ( (Quality of a School life : 1 . جودة الحياة المدرسية ( (Quality of a School life : التعريف االصطالحي(: عرّفها العصيمي2014 )أنها: "هي العالقة اإليجابية بين التلميذ وجميع مكونات المدرسة، سواء البشرية من معلمين وإداريين وأقران، أو مكونات مادية كالمناهج وأنظمة التعليم". ( ص18 .) 2 . الدافعية للتعلم ( Motivation to learn :) التعريف االصطالحي : عرّفها ( توق وعدس وقطامي2003 ) أنّها "هي حالة داخلية عند المتعلم تدفعه إلى االنتباه للموقف .التعليمي واإلقبال عليه بنشاط موجه واالستمرار في هذا النشاط حتى يتحقق التعلم" (ص211 ) :دراسات سابقة ر ي ي جو( ( y التعريف االصطالحي(: عرّفها العصيمي2014 )أنها: "هي العالقة اإليجابية بين التلميذ وجميع مكونات المدرسة، سواء البشرية من معلمين وإداريين وأقران، أو مكونات مادية كالمناهج وأنظمة التعليم". ( ص18 .) 2 . الدافعية للتعلم ( Motivation to learn :) ف اال طال الت ّف ا :(قطا د ت ق2003االنت ا لل قف ند ال ت ل تدف ه إل الة داخل ة ) أنّ ا "ه 2 . الدافعية للتعلم ( Motivation to learn :) التعريف االصطالحي : عرّفها ( توق وعدس وقطامي2003 ) أنّها "هي حالة داخلية عند المتعلم تدفعه إلى االنتباه للموقف .التعليمي واإلقبال عليه بنشاط موجه واالستمرار في هذا النشاط حتى يتحقق التعلم" (ص211 ) :دراسات سابقة :يهدف البحث الحالي إلى ي 1 . .الكشف عن طبيعة العالقة بين الدافعية للتعلم وجودة الحياة المدرسية 2 . الكشف عن الفروق في جودة الحياة المدرسية بين تلميذات المدارس الحكومية واألهلية في المرحلة.االبتدائية 3 . .الكشف عن الفروق في دافعية التعلم بين تلميذات المدارس الحكومية واألهلية في المرحلة االبتدائية ا :أهمية البحث :األهمية النظرية 1 . تنبثق أهمية هذا البحث من إضافة وإثراء المكتبة العربية بالمعرفة النظرية حول متغيّرات (جودة الحياة المدرسية، والدافعية .)للتعلم 1 . تنبثق أهمية هذا البحث من إضافة وإثراء المكتبة العربية بالمعرفة النظرية حول متغيّرات (جودة الحياة المدرسية، والدافعية .)للتعلم 1 . تنبثق أهمية هذا البحث من إضافة وإثراء المكتبة العربية بالمعرفة النظرية حول متغيّرات (جودة الحياة المدرسية، والدافعية )للت ل 2 . إثراء الدراسات في المجال التعليمي بصفة عامة واإلرشاد الطالبي على وجه الخصوص بمزيد من الفهم حول العالقة بين نوق المدرسة وجودة الحياة المدرسية والدافعية للتعلم والوقوف على العوامل التي تسهم في تح سين جودة الحياة المدرسية .لدى تلميذات المرحلة االبتدائية 2 . إثراء الدراسات في المجال التعليمي بصفة عامة واإلرشاد الطالبي على وجه الخصوص بمزيد من الفهم حول العالقة بين نوق المدرسة وجودة الحياة المدرسية والدافعية للتعلم والوقوف على العوامل التي تسهم في تح سين جودة الحياة المدرسية .لدى تلميذات المرحلة االبتدائية ا 3 . يأتي هذا البحث تأكيدًا على ضرورة تطبيق مفهوم الجودة في المجال التربوي .والتعليمي أ ا 3 . يأتي هذا البحث تأكيدًا على ضرورة تطبيق مفهوم الجودة في المجال التربوي .والتعليمي 3 . يأتي هذا البحث تأكيدًا على ضرورة تطبيق مفهوم الجودة في المجال التربوي يأ 1 . قد تفيد نتائج البحث الحالي في مجال التوجيه واإلرشاد في تحسين جودة الحياة المدرسية بكلّ أبعادها عن طريق خلق .اتجاهات إيجابية نحو المدرسة، مما قد يكون نقطة بداية للتغيرات التي تهدف للتطوير 2 . بناءً على نتائج البحث وتوصياته ومقترحاته يمكن أن تسهم في إيجاد حلول لتنمية دافعية التلميذات للتعلم في المرحلة .االبتدائية :حدود البحث - :الحدود الموضوعية .)ويتمثل في متغيرات البحث (جودة الحياة المدرسية، والدافعية للتعلم - الحدود البشرية.: يشمل البحث تلميذات المرحلة االبتدائية الصف (خامس وسادس) من المدارس الحكومية واألهلية - الحدود الزمنية : تم إجراء هذا البحث في الفصل الدراسي الثاني للعام1441 - 1442 .ًه 183 IUG Journal of Educational and Psychology Sciences (Islamic University of Gaza) / CC BY 4.0 IUG Journal of Educational and Psychology Sciences (Islamic University of Gaza) / CC BY 4.0 183 - الحدود المكانية.: جرى البحث على المدارس االبتدائية للبنات (حكومية وأهلية) بغرب الدمام بالمنطقة الشرقية :مصطلحات البحث :مصطلحات البحث 1 . جودة الحياة المدرسية وعالقتها بالدافعية للتعلم لدى تالميذ المرحلة االبتدائية في المدارس األهلية والحكومية بالسعودية من حيث االختالفات بين الجنسين، فإنّ اإلحساس باالنتماء المدرسي قد اختلف بشكل .كبير لصالم التلميذات، وتفاوتت المشاعر تجاه المدرسة بشكل كبير لصالم التالميذ الذكور ا وقام قوكلر وآخرون(Gökler at al, 2015) بدراسة هدفت للتعرف على العالقة بين نوعية الحياة المدرسية والسعادة بين ( طالب الجامعة، وتكونت عينة البحث من326) طالبًا من خمس كليات مختلفة في جامعة كانكيري كاراتكين، وطبّق عليهم مقياس لنوعية الحياة المدرسية، ومقياس لنموذج السعادة أكسفورد، وأظهرت النتائج أنّ آراء المشاركين حول نوعية الحياة المدرسية والسعادة كانت على مستوى معتدل. باإلضافة إلى ذلك تبيّن أنّ كون الطالب في كليات مختلفة ال يُظهر أيّ اختالف كبير في سعادتهم. وقد ،تبيّن أيضً ا في نهاية هذه الدراسة أنّ آراء الطالب حول جودة الحياة المدرسية لم تكن مؤشّ رًا كبيرًا على سعادتهم وبناءً على هذه .النتائج تبيّن أنّ سعادة الطالب كانت مستقلة عن جودة حياتهم المدرسية وأجرى بالسًًًًًا(Bilasa, 2016) دراسًًًًًة هدفت لقياس تصًًًًًورات طالب المدارس المتوسًًًًًطة في أنقرة فيما يتعلق بنوعية ،الحياة المدرسًية، وفقًا للنتائج التي تم الحصًول عليها تبيّن أنّ لدى الطالب تصًورات متوسًطة المسًتوى حول جودة الحياة المدرسًية ولديهم تصًًًًًورات متدنية حول "إدارة المدرسًًًًًة"، ولديهم ت صًًًًًورات معتدلة حول "الطالب" البعد الذي يتضًًًًًمّن العالقات المتبادلة بين الطالب، وبالمثل لديهم تصًًًًورات معتدلة حول المشًًًًاعر تجاه المدرسًًًًة التي تتضًًًًمّن عناصًًًًر تتعلق بالصًًًًورة المدرسًًًًية كما يراها الطالب، وتؤثر إدارة المدرسًًًًًة المسًًًًًؤولة مباشًًًًًرة عن مناخ المدرسًًًًًة وصًًًًًورتها على إدراك نوعية الحياة، وقد وجد أنّ الطالب في ( فصًًًًًل يتكون من10 - 20 ّ) طالبًا لديهم أعلى جودة الحياة المدرسًًًًًية، على الرغم من أنّ النجاح األكاديمي للطالب يختلف إالّ أن .إدراكهم لجودة الحياة المدرسية ال تختلف كما أجرى سيتن(Cetin, 2018) دراسة هدفت للكشف عن العالقة بين ج ودة المعلمين في مرحلة ما قبل الخدمة في ( الحياة الجامعة، ومشاركة الطالب في األنشطة الصفية. وتتألف عينة الدراسة من789 ( ) طالبًا يدرسون في7 ) جامعات حكومية ( تركية مختلفة في7) مناطق مختلفة في تركيا. تم استخدام مقياس مشاركة الطالب في الفصول الدراسية الذي طوّره ( ناير2015 ) ( الستكشاف جودة الحياة المدرسية للطالب، ومقياس جودة الحياة المدرسية الذي طوّره يلماظ وجوكلوك بوكيوغلو2006 ّ) وجد أن هناك عالقة بين جودة الحياة المدرسية للطالب المشاركين في البحث، ومستوى المشاركة في األنشطة الصفية. ووجد أنّ األبعاد الفرعية للرضا عن الكلية، والرضا عن المعلمين، واالرتياح عن العالقات مع الطالب، لها عالقة إيجابية باألبعاد الفرعية لمشاركة الطالب الصفية. ويرى سيتن أنّ نوعية الحياة المدرسية تنبأ بالدوافع األكاديمية من خالل التأثير على فعالية األهداف والنواتج التعليمية. جودة الحياة المدرسية وعالقتها بالدافعية للتعلم لدى تالميذ المرحلة االبتدائية في المدارس األهلية والحكومية بالسعودية زهراء سليمان ( المدارس االبتدائية العامة والخاصة. شملت العينة650 ) تلميذًا من تسع مناطق مدرسية. تم جمع البيانات باستخدام نموذج المعلومات الش ،خصية الذي أعدّه الباحث، ومقياس جودة الحياة المدرسية من إعداد (ساري2007 ) وهو من نوق ليكرت الخماسي ( ويتكون من35 ،) عنصرًا ضمن أبعاد، هي: التواصل بين المعلم والتلميذ، والتواصل بين التلميذ والتلميذ، والمشاعر تجاه المدرسة والمشاعر تجاه إدارة المدرسة، ومقياس ا لحساسية النفسية لالنتماء للمدرسة(goodnwo, 1993) . كانت درجات جودة الحياة المدرسية الفرعية الخاصة بالتواصل بين التالميذ ومشاعر الرفض لدى التالميذ الذين التحقوا بالمدارس العامة تختلف اختالفًا كبيرًا عن التالميذ الذين التحقوا بالمدارس الخاصة. من حيث االختالفات بين الجنسين، فإنّ اإلحساس باالنتماء المدرسي قد اختلف بشكل .كبير لصالم التلميذات، وتفاوتت المشاعر تجاه المدرسة بشكل كبير لصالم التالميذ الذكور وقام قوكلر وآخرون(Gökler at al, 2015) بدراسة هدفت للتعرف على العالقة بين نوعية الحياة المدرسية والسعادة بين ( طالب الجامعة، وتكونت عينة البحث من326) طالبًا من خمس كليات مختلفة في جامعة كانكيري كاراتكين، وطبّق عليهم مقياس لنوعية الحياة المدرسية، ومقياس لنموذج السعادة أكسفورد، وأظهرت النتائج أنّ آراء المشاركين حول نوعية الحياة المدرسية والسعادة كانت على مستوى معتدل. باإلضافة إلى ذلك تبيّن أنّ كون الطالب في كليات مختلفة ال يُظهر أيّ اختالف كبير في سعادتهم. وقد ،تبيّن أيضً ا في نهاية هذه الدراسة أنّ آراء الطالب حول جودة الحياة المدرسية لم تكن مؤشّ رًا كبيرًا على سعادتهم وبناءً على هذه .النتائج تبيّن أنّ سعادة الطالب كانت مستقلة عن جودة حياتهم المدرسية ( المدارس االبتدائية العامة والخاصة. شملت العينة650 ) تلميذًا من تسع مناطق مدرسية. تم جمع البيانات باستخدام نموذج المعلومات الش ،خصية الذي أعدّه الباحث، ومقياس جودة الحياة المدرسية من إعداد (ساري2007 ) وهو من نوق ليكرت الخماسي ( ويتكون من35 ،) عنصرًا ضمن أبعاد، هي: التواصل بين المعلم والتلميذ، والتواصل بين التلميذ والتلميذ، والمشاعر تجاه المدرسة والمشاعر تجاه إدارة المدرسة، ومقياس ا لحساسية النفسية لالنتماء للمدرسة(goodnwo, 1993) . كانت درجات جودة الحياة المدرسية الفرعية الخاصة بالتواصل بين التالميذ ومشاعر الرفض لدى التالميذ الذين التحقوا بالمدارس العامة تختلف اختالفًا كبيرًا عن التالميذ الذين التحقوا بالمدارس الخاصة. :دراسات تناولت جودة الحياة المدرسية وتوصلت الدراسة لعدد من النتائج ومنها، وجود عالقة ارتباطية دالة بين جودة الحياة األكادي مية لدى الطالب والتحصيل لديهم، ووجود عالقة ارتباطية دالة بين جودة الحياة النفسية لدى الطالب والتحصيل، ووجود عالقة ارتباطية دالة إحصائيًّا بين جودة الحياة االجتماعية ووجود عالقة ارتباطية دالة إحصائيًّا بين جودة الحياة النفسية لدى الطالب والتحصيل، ووجود عالق .ة ارتباطية دالة بين جودة الحياة البين شخصية كما قام اليف وتونك(Aliyve & Tunk, 2015) بدراسة هدفت لتقييم ما إذا كان مفهوم نوعية الحياة المدرسية واإلحساس باالنتماء للمدرسة يختلف في تالميذ المدارس االبتدائية العامة والخاصة حسب نوق المدرسة والجنس ومستوى الصف والحالة الدراسة من تالميذ الصف السادس والسابع والثامن ف االجتماعية واالقتصادية لألسرة ومستوى تعلي الوالدين، يتألف المشاركون ف اا كما قام اليف وتونك(Aliyve & Tunk, 2015) بدراسة هدفت لتقييم ما إذا كان مفهوم نوعية الحياة المدرسية واإلحساس باالنتماء للمدرسة يختلف في تالميذ المدارس االبتدائية العامة والخاصة حسب نوق المدرسة والجنس ومستوى الصف والحالة االجتماعية واالقتصادية لألسرة ومستوى تعليم الوالدين، يتألف المشاركون في الدراسة من تالميذ الصف السادس والسابع والثامن في IUG Journal of Educational and Psychology Sciences (Islamic University of Gaza) / CC BY 4.0 184 جودة الحياة المدرسية وعالقتها بالدافعية للتعلم لدى تالميذ المرحلة االبتدائية في المدارس األهلية والحكومية بالسعودية جودة الحياة المدرسية وعالقتها بالدافعية للتعلم لدى تالميذ المرحلة االبتدائية في المدارس األهلية والحكومية بالسعودية جودة الحياة المدرسية وعالقتها بالدافعية للتعلم لدى تالميذ المرحلة االبتدائية في المدارس األهلية والحكومية بالسعودية زهراء سليمان المدارس األهلية والحكومية بالسعودية التعليم في المدرسة، على الرغم من وجود اختالف بين التالميذ االصغر سنًّا واألكبر وذو ي اإلنجاز المدرسي العالي والجيّد لصالم ّالتالميذ األصغر سنًّا وذوي األداء العالي، كما وجد أنّ التالميذ يعبّرون عن مشاعر إيجابية تجاه العالقة مع المعلمين، كما أن الفتيات ذوات األداء العالي والتلميذات األصغر سنًّا يدركون كفاءتهم المدرسية بشكل أكثر إيجابية من األوالد واألكبر سنًّا وذوي األداء الجيّد، وأنّ المشاعر اإليجابية تجاه المدرسة هي مؤشّ ر على رفاهية الطالب وشرط لتطوير كفاءاتهم العاطفية واالجتماعية في المدرسة التي لها دور مهم في دافعيتهم للتعلم والنجاح في المدرسة، وأوصت الدراسة بأهمية تعزيز اإلحساس بالمجت ،مع المدرسي الذي يمكن أن يساهم في تصور الطالب للمدرسة وليس فقط كمكان للتدريس واكتساب المعارف، ولكن أيضً ا كمكان حيث يحبّون .أن يكونوا ويشعروا بالسعادة، وتم التأكيد على أهمية تحسين نوعية الحياة المدرسية وأهمية تعزيز جودة الحياة المدرسية ( وكذلك أجرى أمزيان2020 ) دراسًًًًًًة هدفت الكشًًًًًًف عن عالقة اتجاهات األبوين نحو جودة الحياة المدرسًًًًًًية بالتحصًًًًًًيل الدراسًًًًًًًًًي، عن طريق تقييم اتجاهات األبوين نحو جودة الحياة المدرسًًًًًًًًًية بكلٍّّ من مؤسًًًًًًًًًسًًًًًًًًًة التعليم العمومي ومؤسًًًًًًًًًسًًًًًًًًًة التعليم الخصًًوصًًي، سًًواء من حيث تقييم العالقات القائمة ب ين األسًًرة والمدرسًًة، أو بين المدرسًًين والتالميذ، أو من حيث تقييم األنشًًطة ( التعليمية أو أسًًًًًاليب وطرائق التدريس. واسًًًًًتخدم المنهج الوصًًًًًفي االرتباطي وتكونت عينة الدراسًًًًًة من50 ) من أولياء األمور و ( 276) من تالميذ المرحلة اإلعدادية، وتمثلت أدوات الدراسًًًة في تصًًًميم اسًًًتما رة وزعت على آباء وأولياء التالميذ لتقييم اتجاهاتهم .نحو جودة الحياة المدرسية ٍ .أما نتائج تحصًًًًًيل التالميذ، فتم االعتماد فيه على درجات معدالتهم العامة في كلٍّّ من مادتي الرياضًًًًًيات واللغة الفرنسًًًًًية وقد أظهرت نتائج الدراسة تأثير جودة الحياة المدرسية في التحصيل الد راسي للتالميذ، حيث إنّ التالميذ الذين تتميّز اتجاهات آبائهم باإليجابية تجاه المدرسًين، وتجاه ما توفره المدرسًة من تجهيزات وموارد بشًرية، وما تختاره من أنشًطة تعليمية، كانت نتائجهم عالية مقارنة مع التالميذ الذين كانت آلبائهم اتجاهات سًًًًًًلبية. وكشًًًًًًفت الدراسًًًًًًة أيضًًًًًً ً ا ع ن وجود فروق ذات داللة إحصًًًًًًائية بين نتائج التحصًًيل الدراسًًي لتالميذ المؤسًًسًًتين، وذلك لصًًالم تالميذ المؤسًًسًًة الخصًًوصًًية سًًواء في تحصًًيل الرياضًًيات أو في تحصًًيل .اللغة الفرنسية أ IUG Journal of Educational and Psychology Sciences (Islamic University of Gaza) / CC BY 4.0 جودة الحياة المدرسية وعالقتها بالدافعية للتعلم لدى تالميذ المرحلة االبتدائية في المدارس األهلية والحكومية بالسعودية ومن المعتقد أنّ ت حديد آثار نوعية الحياة المدرسية على الدافع األكاديمي سوف يسهم في وضع السياسات لصانعي التعليم والمدرسين. وقام بيترن(Buterin, 2019) بدراسة هدفت للبحث عن جودة الحياة المدرسية من وجه نظر تالميذ المدارس االبتدائية من الصف الخامس إلى الثامن وعددهم433 تلميذًا وتلميذة من ستّ مدارس ابتدائية في (كرواتيا). تم جمع البيانات عن طريق ،استبيان جودة الحياة المدرسية (اينلي1992 ( ) بعد تقنينه في كرواتيا عام2009 ) وتم تحليل مدى رضا التالميذ بشكل عام عن المدرسة وإدراكهم لألبعاد المحددة للحياة المدرسية، باإلضافة إلى ال فروق في تقييماتهم فيما يتعلق بالجنس والصف والمدارس وعلى أساس نتائج البحوث، وتشير النتائج إلى أنّ التالميذ يعبّرون عن مشاعر محايدة تجاه المدرسة ويعبّرون عن تقييم محايد لتجربة IUG Journal of Educational and Psychology Sciences (Islamic University of Gaza) / CC BY 4.0 185 جودة الحياة المدرسية وعالقتها بالدافعية للتعلم لدى تالميذ المرحلة االبتدائية في المدارس األهلية والحكومية بالسعودية :التعقيب على المحور األول أ ركزت الدراسات السابقة في مجال جودة الحياة المدرسية على عينة تالميذ المرحلة االبتدائية أكثر من باقي المراحل خاصة الدراسات األجنبية، مثل دراسة بيترن(Buterin, 2019 ، ودراسة اليف وتونك(Aliyve & Tunk, 2015) ، ودراسة اينال وصادق(Inal & Sadik, 2014). أما العينة في الدراسات العربية فكانت على المرحلة االبتدائية، مثل دراسة العصيمي ( 2014 ،) ( والمرحلة الثانوية مثل دراسة الكناني2015 ( )، والمرحلة اإلعدادية، مثل دراسة أمزيان2020 )، واتفقت جميع الدراسات على استخدام المنهج الوصفي واستخدمت جميع الدراسات مقياس جودة الحياة المدرسية ما عدا دراسة اينال وصادق(Inal & Sadik, 2014) استخدمت المقابل ،ة. وركزت دراسات جودة الحياة المدرسة على أهداف تمثلت في نظرة التالميذ لنوعية الحياة المدرسية ودراسة وجهات نظر التالميذ والمعلمين وأولياء األمور في جودة الحياة المدرسية، والعالقة بين جودة الحياة المدرسية والتحصيل الدراسي، وتقييم مفهوم نوعية الحياة باختالف ن وق المدرسة، والعالقة بين نوعية الحياة المدرسية والسعادة، والكشف عن العالقة بين نوعية الحياة الجامعية، ومشاركة الطالب في أنشطة غرفة الصف، ودراسة في العالقة بين جودة الحياة المدرسية وتقدير الذات ،والتوافق الشخصي واالجتماعي، وهي دراسة (العصيمي2014). وتوصلت ا لنتائج إلى أنّ جودة الحياة المدرسية تتأثر بالمتغيّرات المختلفة لنوق المدرسة والجنس والمستويات التعليمية لآلباء والشعور باالنتماء إلى المدرسة وتتشابه هذه الدراسة مع الدراسات السابق ة في انها تناولت عينة طالب المرحلة االبتدائية وكذلك استخدمت المنهج الوصفي وتخ تلف انها تبين عالقة جودة الحياة المدرسية . ونوعية هذه المدرسة بالدافعية للتعلم 186 جودة الحياة المدرسية وعالقتها بالدافعية للتعلم لدى تالميذ المرحلة االبتدائية في المدارس األهلية والحكومية بالسعودية زهراء سليمان المدارس األهلية والحكومية بالسعودية كما توصلت نتائج دراسة (اينال وصادق) إلى تباين مشاعر كلٍّّ من التالميذ والمعلمين حول نوعية الحياة المدرسية، حيث إنّ التالميذ يشعرون بمشاعر إيجابية، في حين أنّ المعلمين وجدوا نوعي ة الحياة المدرسية منخفضة. وتوصلت الدراسات لوجود عالقة .بين التحصيل وجودة الحياة المدرسية، ووجود عالقة بين إدراك جودة الحياة المدرسية وتقدير الذات والتوافق الشخصي واالجتماعي وتوصل (سيتن) إلى وجود عالقة بين جودة الحياة المدرسية للطالب ومستويات المشاركة في غر فة الصف، بينما كانت نتائج دراسة (قوكلر) مختلفة، إذ بيّنت أنّ سعادة الطالب كانت مستقلة عن جودة حياتهم المدرسية، وتوصل (بالسا) أنه كلّما قلّ عدد الطالب ،في الفصل، أصبم لديهم أعلى جودة للحياة المدرسية، وأخيرًا أكد (بيترن) على أهمية تحسين نوعية الحياة المدرسية )ووجد (أمزيان تأثيرًا لجودة الحياة المدرسية في التحصيل الدراسي للتالميذ الذين تتميّز اتجاهات آبائهم باإليجابية. :التعقيب على المحور األول ومن خالل هذا العرض يتبيّن ق لة الدراسات العربية التي تناولت جودة الحياة المدرسية، وتم االستفادة من هذه الدراسات باستخدام مقياس جودة الحياة المدر سية للمرحلة .االبتدائية، وكذلك اتباق المنهج الوصفي واالستعانة بتوصية دراسة (العصيمي) لتعزيز مشكلة البحث :دراسات تناولت الدافعية للتعلم ( اف ّ أجرى العسًًًًًًًًًًًًًً2008 ) دراسًًًًًًًًًًًًًًة هًدفًت إلى الكشًًًًًًًًًًًًًًف عن مًدركًات الطلبًة لبيئًة التعلم اآلمنًة، وبيًان عالقتهًا بًالتفًاعًل االجتماعي بين الط( لبة ودافعيتهم للتعلم، وشًًًملت عينة الدراسًًًة677 ) طالبًا وطالبة من طلبة الصًًًف العاشًًًر األسًًًاسًًًي بالمدارس ،الحكوميًة، وتم اختيًارهم بطريقًة طبقيًة عشًًًًًًًًًًًًًًوائيًة، ولجمع البيًانًات قًام البًاحًث بتطوير ثالثًة مقًاييس: مقيًاس بيئًة التعلم اآلمنًة ومقياس التفاعل االجتماعي، ومقياس الدافعي ة للتعلم. وتم التحقق من صًًًًًًدق المقاييس بعرضًًًًًًها على المحكّمين والتأكد من الثبات عن طريق إعادة االختبار، وأظهرت النتائج أنّ مسًًًًًًًتوى مدركات الطلبة لبيئة التعلم اآلمنة كان متوسًًًًًًًطًا، كما أظهرت النتائج تفوق اإلناث على الذكور في مستوى إدراكهنّ لبيئة التعلم اآلمنة، ودلت النتائج أيضً اعلى وجود فروق ذات داللة إحصائية بين متوسطات درجات مدركات الطلبة لبيئة التعلم اآلمنة باختالف نوق المدرسًًًًة لصًًًًالم المدارس الخاصًًًًة، وأشًًًًارت النتائج لوجود عالقة إيجابية دالة إحصًًائيًّا بين مدركات الطلبة لبيئة التعلم اآلمنة ودافعيتهم للتعلم، ووجود عالق ة إيجابية دالة إحصًًائيًّا بين مدركات الطلبة لبيئة .التعلم اآلمنة وتفاعلهم االجتماع كما قام هينانج وآخرون(Henning, at al, 2010) بدراسة هدفت لمعرفة عالقة جودة الحياة بالدافعية للتعلم لدى طلبة سنة رابعة وسنة خامسة طب بجامعة ،أوكالند وقد استخدم الباحثون مقياس جودة الحياة بأبعاده)جودة الحياة الجسمية والنفسية والعالقات ،االجتماعية وجودة المحيط(، ومقياس الدافعية ،للتعلم ّوتوصلت النتائج إلى أن) 100 من% الطلبة يرون ّبأن الحواجز الشخصية تمثل لهم ألمًا وضررًا وحرمانًا من النوم؛ فهي تضعف دافعيتهم للتعل ّم. وأن(61%) من الطلبة يفزعون ًليال من تجارب دراستهم التي ينشأ عنها انخفاض مستويات الطاقة ،لديهم لكنّهم يشعرون بأنهم ال يدرسون ٍّّإلى حد مقبول أو باألحرى بالمقدار الكافي. ّوأن(61%) يعيشون فترات إيجابية تدفعهم إلى ،التعلم ويعود ذلك إلى تحفيزهم من قبل أطباء آخرين وتشجيعهم لما يقومون به من ّعمل يستحق الثناء ّوالشكر. أي إن الدافعية للتعلم تعود إلى التحفيز والتشجيع من قبل .اآلخرين كذلك أجرى فيريرا وآخرون(Ferreira at al, 2011) دراسًًًًًًة هدفت لمعرفة كيف يؤثر الشًًًًًًعور باالنتماء للمدرسًًًًًًة على ( الًدافع الًداخلي للتعلم، وقًد طبّقًت الًدراسًًًًًًًًًًًًًًة على عينًة مكونًة من403 ( ) طًالًب وطًالبًة من المرحلًة الثًانويًة من18 ) مًدرسًًًًًًًًًًًًًًة ( بالبرتغال تتراوح أعمارهم بين14 و22) سنة، وطبّق مقياس اإلحساس باالنتماء للمدرسة واستبيا ن الدافع الداخلي للتعلم الذي طورّه فاليرند وآخرون(Vallerand, 1992) ، وتوصًلت النتائج إلى أنّ الشًعور السًلبي باالنتماء إلى المدرسًة له تأثير سًلبي على الدافع .الداخلي وعلى التعلم. جودة الحياة المدرسية وعالقتها بالدافعية للتعلم لدى تالميذ المرحلة االبتدائية في المدارس األهلية والحكومية بالسعودية ( وقد تم اختيار عينة مكونة من570 ) تلميذًا وتلميذة بالطريقة العشوائية الطبقية من القطاعات التعليمية المختلفة بمحلية شرق النيل. وتمثلت أدوات الدراسة في استمارة المعلومات األولية ومقياس دا فعية التعلم، إضافة لمقياس التوافق الدراسي لتالميذ مرحلة التعليم األساسي. : ًوقد توصلت الدراسة لمجموعة من النتائج، أهمها أوال تتميّز دافعية التعلم باالرتفاق بدرجة دالة. ثانيًا: توجد عالقة ارتباطية طردية دالة بين دافعية التعليم والتوافق الدراسي. ثالثًا: توجد عالقة ارتباطية طردية دالة بين دافعية التعلم ومستوى تعليم األب. رابعًا: ال توجد عالقة ارتباطية دالة بين دافعية التعلم ومستوى تعليم األم لدى التالميذ. خامسً ا: ال توجد فروق في دافعية التعلم تبعًا لمتغيّر النوق لدى التالميذ، وأخيرًا ال توجد فروق في دافعية التع لم تبعًا للمستوى الصفي لدى التالميذ. ( بينما أجرت الرايقي2018 ) دراسة هدفت للتعرف على العوامل المدرسية المؤدية النخفاض الدافعية للتعلم من وجهة نظر والتقرير الوطني للطلبة. تم اسًًًًًتخدام تحليل االنحدار المتعدد في تحليل البيانات تؤكد النتائج أنّ خصًًًًًائص خلفية الطالب المختلفة ودوافع التعلم يمكن أن تنبئ بنتائج تعليمية مختلفة. ومع ذلك، ال يمكن لسًًًًًًًًًًلوكيات مشًًًًًًًًًًاركة الطالب أن تتنبأ بشًًًًًًًًًًكل كبير بأنواق مختلفة من نتائج التعلم عندما يتم تضًمين خلفية الطالب ومتغيّرات تحفيز التعلم. وجدت هذه الدراسًة أيضً ً ا أنّ تخصًصًات الطالب تلعب دورًا مهمًّا في شرح مخرجات التعلم بشكل عام، تسلّط النتائج الضوء على أهمية الدافع التعليمي وتشير إلى أنه يمكن للمدربين .تزويد الطالب بخبرات تعليمية أكثر نجاحًا لضمان مزيد من الثقة في قدراتهم التعليمية يا ( كما أجرت الهازمي2017 ) دراسًًًًًة هدفت إلى اكتشًًًًًاف الطرق العملية التي يتبعها المدرسًًًًًون لتحفيز الطالب على التعلم في إحدى المدارس السًًًًًًًًًًًًًعودية في ال مملكة المتحدة، وكذلك قياس مدى قدرتهم على إدراك مسًًًًًًًًًًًًًتوى الدافعية عند الطالب، واعتمد البحث الكتشًًًًًًًاف ذلك على عمل مقابالت شًًًًًًًبه منظّمة الثني عشًًًًًًًر طالبًا، وهم6 تالميذ من المرحلة االبتدائية، و3 من المرحلة المتوسًًًًًًًطة، و3 من المرحلة الثانوية، واثني عشًًًًًًًر معلّمًا، وكذلك الم الحظة داخل الفصًًًًًًًول الدراسًًًًًًًية. وأظهرت النتائج أنّ غالبية الطالب في هذه المدرسًًًة غير محفّزين للتعلم لألسًًًباب التالية: طريقة تدريس المعلمين، قلّة االهتمام واالسًًًتمتاق بما يطرح، وكذلك صًًًًعوبة المقررات. كما أظهرت النتائج أنّ المعلمين يميّزون مدى دافعية الطالب للتعلم م ،ن خالل؛ االنتظام في حضًًًًور المدرسًًًًة إكمال الواجبات والمهام المنزلية، وكذلك مدى انخراط الطالب في عمل الواجبات المعقدة التي تحتاج إلى تفكير. جودة الحياة المدرسية وعالقتها بالدافعية للتعلم لدى تالميذ المرحلة االبتدائية في المدارس األهلية والحكومية بالسعودية جودة الحياة المدرسية وعالقتها بالدافعية للتعلم لدى تالميذ المرحلة االبتدائية في المدارس األهلية والحكومية بالسعودية زهراء سليمان المدارس األهلية والحكومية بالسعودية المدارس األهلية والحكومية بالسعودية والتقرير الوطني للطلبة. تم اسًًًًًتخدام تحليل االنحدار المتعدد في تحليل البيانات تؤكد النتائج أنّ خصًًًًًائص خلفية الطالب المختلفة ودوافع التعلم يمكن أن تنبئ بنتائج تعليمية مختلفة. ومع ذلك، ال يمكن لسًًًًًًًًًًلوكيات مشًًًًًًًًًًاركة الطالب أن تتنبأ بشًًًًًًًًًًكل كبير بأنواق مختلفة من نتائج التعلم عندما يتم تضًمين خلفية الطالب ومتغيّرات تحفيز التعلم. وجدت هذه الدراسًة أيضً ً ا أنّ تخصًصًات الطالب تلعب دورًا مهمًّا في شرح مخرجات التعلم بشكل عام، تسلّط النتائج الضوء على أهمية الدافع التعليمي وتشير إلى أنه يمكن للمدربين .تزويد الطالب بخبرات تعليمية أكثر نجاحًا لضمان مزيد من الثقة في قدراتهم التعليمية ( كما أجرت الهازمي2017 ) دراسًًًًًة هدفت إلى اكتشًًًًًاف الطرق العملية التي يتبعها المدرسًًًًًون لتحفيز الطالب على التعلم في إحدى المدارس السًًًًًًًًًًًًًعودية في ال مملكة المتحدة، وكذلك قياس مدى قدرتهم على إدراك مسًًًًًًًًًًًًًتوى الدافعية عند الطالب، واعتمد البحث الكتشًًًًًًًاف ذلك على عمل مقابالت شًًًًًًًبه منظّمة الثني عشًًًًًًًر طالبًا، وهم6 تالميذ من المرحلة االبتدائية، و3 من المرحلة المتوسًًًًًًًطة، و3 من المرحلة الثانوية، واثني عشًًًًًًًر معلّمًا، وكذلك الم الحظة داخل الفصًًًًًًًول الدراسًًًًًًًية. وأظهرت النتائج أنّ غالبية الطالب في هذه المدرسًًًة غير محفّزين للتعلم لألسًًًباب التالية: طريقة تدريس المعلمين، قلّة االهتمام واالسًًًتمتاق بما يطرح، وكذلك صًًًًعوبة المقررات. كما أظهرت النتائج أنّ المعلمين يميّزون مدى دافعية الطالب للتعلم م ،ن خالل؛ االنتظام في حضًًًًور المدرسًًًًة إكمال الواجبات والمهام المنزلية، وكذلك مدى انخراط الطالب في عمل الواجبات المعقدة التي تحتاج إلى تفكير. وأجرى بالوك (Bullock, 2017)دراسًًة هدفت لمعرفة العوامل المؤثرة في دافعية الطلبة وتحصًًيلهم األكاديمي في العلوم على عينة م ن طالب الصًًًًًًًف ،الثامن بما فيها العالقة بين المعلم والطالب والعالقات بين ،الطلبة وتوقعات المعلمين في العلوم وتفضًًًًيالت الطلبة المختبر مقابل ،المحاضًًًًرة)والعوامل الشًًًًخصًًًًية للمعلمين (الخدمة في ،المدرسًًًًة الخبرة ،المهنية ،المؤهالت العمر، وإدراك الطلبة لتوقعات المعلمين في ،العلوم وتكونت عينة الدرارسًًًًًًًة من) 150 ) فردًا ،مشًًًًًًًتركًا واعتمد المنهج الوصًًًًًًًفي ،االرتباطي واسًًًًًًًًًًتخدم مقياس الدافعية للتعلم وأظهرت الدراسًًًًًًًًًًة وجود عالقة ارتباطية دالة بين دافعية الطلبة وإدراكهم لتوقعات المعلمين والتوقعات الحقيقية للمعلمين وعمر المعلم والمؤ هل العلمي للمعلم. ( وأجرى أحمد وفضول2018 ) دراسة هدفت لمعرفة العالقة بين دافعية التعلم والتوافق الدراسي لتالميذ مرحلة التعليم األساسي بمحلية شرق النيل، كما هدفت لمعرفة الفروق في دافعية التعلم وسط التالميذ تبعًا للنوق، والفصل الدراسي ومستوى تعليم .الوالدين ولتحقيق هذه األهداف استخدم الباحثان المنهج الوصفي االرتباطي. :التعقيب على المحور األول في المقابل، يؤثر الدافع الداخلي بشكل إيجابي وكبير على التعلم على حين أجرى هشًًًًًًًي ه(Heish, 2014) دراسًًًًًًًة هدفت لفهم إمكانية التنبؤ بنتائج التعليم المختلفة من خالل خصًًًًًًًائص خلفية الطالب المختلفة وأنواق دوافع التعلم وسًلوكيات المشًاركة. تكونت عينة الدراسًة من178 من طلبة المبتدئين في جامعة بحثية مدتها4 سًًنوات في تايوان، تم تكييف مقاييس الدوافع وا لمشًًاركة ونتائج التعلم المتصًًورة من اإلسًًتراتيجيات المحفّزة السًًتبيان التعلم كما قام هينانج وآخرون(Henning, at al, 2010) بدراسة هدفت لمعرفة عالقة جودة الحياة بالدافعية للتعلم لدى طلبة سنة رابعة وسنة خامسة طب بجامعة ،أوكالند وقد استخدم الباحثون مقياس جودة الحياة بأبعاده)جودة الحياة الجسمية والنفسية والعالقات ،االجتماعية وجودة المحيط(، ومقياس الدافعية ،للتعلم ّوتوصلت النتائج إلى أن) 100 من% الطلبة يرون ّبأن الحواجز الشخصية تمثل لهم ألمًا وضررًا وحرمانًا من النوم؛ فهي تضعف دافعيتهم للتعل ّم. وأن(61%) من الطلبة يفزعون ًليال من تجارب دراستهم التي ينشأ عنها انخفاض مستويات الطاقة ،لديهم لكنّهم يشعرون بأنهم ال يدرسون ٍّّإلى حد مقبول أو باألحرى بالمقدار الكافي. ّوأن(61%) يعيشون فترات إيجابية تدفعهم إلى ،التعلم ويعود ذلك إلى تحفيزهم من قبل أطباء آخرين وتشجيعهم لما يقومون به من ّعمل يستحق الثناء ّوالشكر. أي إن الدافعية للتعلم تعود إلى التحفيز والتشجيع من قبل .اآلخرين IUG Journal of Educational and Psychology Sciences (Islamic University of Gaza) / CC BY 4.0 187 جودة الحياة المدرسية وعالقتها بالدافعية للتعلم لدى تالميذ المرحلة االبتدائية في المدارس األهلية والحكومية بالسعودية جودة الحياة المدرسية وعالقتها بالدافعية للتعلم لدى تالميذ المرحلة االبتدائية في المدارس األهلية والحكومية بالسعودية وأظهرت الدراسة النتائج التالية جاءت العوامل المدرسية المرتبطة بالمعلمة والمؤدية النخفاض الدافعية للتعلم لدى طالبات الم رحلة الثانوية بدرجة موافقة (متوسطة) من وجهة نظر الطالبات على تلك العوامل ككل، جاءت العوامل المدرسية المرتبطة بالبيئة الصفية والمؤدية النخفاض الدافعية للتعلم لدى طالبات المرحلة الثانوية بدرجة موافقة (كبيرة) من وجهة نظر الطالبات على تلك العوامل ككل، وتمثل أب :رزها في IUG Journal of Educational and Psychology Sciences (Islamic University of Gaza) / CC BY 4.0 IUG Journal of Educational and Psychology Sciences (Islamic University of Gaza) / CC BY 4.0 188 جودة الحياة المدرسية وعالقتها بالدافعية للتعلم لدى تالميذ المرحلة االبتدائية في المدارس األهلية والحكومية بالسعودية زهراء سليمان المدارس األهلية والحكومية بالسعودية عدم تجهيز الفصول بوسائل تعليمية حديثة، عدم توافق األنشطة المدرسية الصفية مع اهتمامات الطالبات، تهوية الصًًف غير الجيّدة، الفوضى واإلزعاج داخل الصف. عدم تجهيز الفصول بوسائل تعليمية حديثة، عدم توافق األنشطة المدرسية الصفية مع اهتمامات الطالبات، تهوية الصًًف غير الجيّدة، الفوضى واإلزعاج داخل الصف. ( في حين أجرت البار وآخرون2019 ) دراسة هدفت إلى معرفة دور الخدمات االجتماعية المدرسية في تعزيز الدا فعية للتعلم لدى تالميذ التعليم االبتدائي من وجهة نظر المعلمين، واتبعت المنهج الوصفي باستخدام التكرارات والنسب المئوية والدوائر ( النسبية وطبّقت الدراسة على عينة من المعلمين12 معلمًا) بمدرسة األمير عبد القادر ببلدية عين الملم بوالية المسيلة، وكذا من خالل اس تبيان وزق عليهم، وبعد معالجة النتائج تم التوصل إلى أنّ للتغذية المدرسية دورًا كبيرًا في تعزيز الدافعية للتعلم لدى تالميذ التعليم االبتدائي، والصحة المدرسية تساهم في تعزيز الدافعية للتعلم لدى تالميذ التعليم االبتدائي، وتوفير النقل المدرسي للتالميذ يساهم بشك .ل فعّال في تعزيز دافعيتهم نحو التعلم ي ور ى يب تنوعت العينة لجميع المراحل التعليمية تقريبًا في الدراسات السابقة التي تناولت الدافعية للتعلم، كما تناولت دراسة لعينة من .)الطالب وعينة من المعلمين، مثل دراسة (الهازمي) ودراسة (البار ،وتنوعت األدوات المستخدمة كاالستبيان والمقاييس والمقابلة واتفقت على استخدام المنهج الوصفي، وركزت األهداف في دراسة الدافعية للتعلم على معرفة دور الخدمات االجتماعية المدرسية في تعزيز الدافعية للتعلم والعوامل المدرسية المؤدية النخفاض الدافعية، والطرق العملية التي يتبعها المدرسون لتحفيز الطالب وإمكانية التنبؤ بنتائج التعليم المختلفة من خالل خصائص خلفية الطالب المختلفة والكشف عن مدركات الطلبة لبيئة التعلم اآلمنة، وبيان عالقتها بالتفاعل االجتماعي بين الطلبة ودافعيتهم للتعلم، ومعرفة العالقة بين دافعية التعلم والتو افق الدراسي للتالميذ وتأثير الشعور باالنتماء للمدرسة على الدافع الداخلي للتعلم، ومعرفة عالقة جودة الحياة بالدافعية للتعلم وتتشابه هذه الدراسات مع الدراسة الحالي ة في ان العينة من المرحلة االبتدائية وتستخدم االستبيان كأداة ولكنها تتميز بربطها بجودة الحياة ال . جودة الحياة المدرسية وعالقتها بالدافعية للتعلم لدى تالميذ المرحلة االبتدائية في المدارس األهلية والحكومية بالسعودية مدرسية وتوصلت نتائج الدراسات إلى أنه توجد عالقة ارتباطية طردية بين دافعية التعليم والتوافق الدراسي، وأنّ الصحة المدرسية تساهم في تعزيز الدافعية للتعلم، كما أنّ الدافعية للتعلم تعود إلى التشجيع والتحفيز من قبل اآلخرين، وأنّ الشعور السلبي باالنتما ء للمدرس ة له تأثير سلبي على الدافع الداخلي وعلى التعلم، وفي المقابل يؤثر الدافع الداخلي بشكل إيجابي وكبير على التعلم، وأظهرت النتائج أيضً ا تفوق اإلناث على الذكور في مستوى إدراكهنّ لبيئة التعلم اآلمنة، ووجود فروق ذات داللة إحصائية بين مدركات الطلبة لبيئة التعلم اآل منة باختالف نوق المدرسة لصالم المدارس الخاصة، ووجود عالقة إيجابية بين مدركات الطلبة لبيئة التعلم اآلمنة ودافعيتهم للتعلم، ووجود عالقة إيجابية بين مدركات الطلبة لبيئة التعلم اآلمنة وتفاعلهم االجتماعي، وأنّ العوامل المدرسية المرتبط ة بالبيئة الصفية والمؤدية ال نخفاض الدافعية للتعلم كانت بدرجة عالية، واختلفت هذه النتائج مع نتائج دراسة (الهازمي) حيث أرجعت سبب انخفاض الدافعية إلى طريقة تدريس المعلمين، وقلة االهتمام واالستمتاق بما يطرح، وكذلك صعوبة المقررات، وأخيرًا توصلت النتائج إلى أنّ خلفية الطالب المختلفة ودواف ع التعلم يمكن أن تنبئ بنتائج تعليمية مختلفة وأهمية الدافع التعليمي، وتشير إلى أنه يمكن للمدربين تزويد الطالب بخبرات تعليمية أكثر نجاحًا لضمان مزيد من الثقة في قدراتهم التعليمية، وتم االستفادة من هذه الدراسات .باستخدام مقياس دافعية التعلم دراسات جمعت ما بين :الدافعية للتعلم وجودة الحياة المدرسية ( أجرى لي وآخرونLee et al., 2011 ) دراسة هدفت إلى التعرف على التأثيرات المباشرة للبيئة والتعلم الصفي على تصورات ( التالميذ حول جودة الحياة المدرسية وشعورهم باالنتماء في المدارس االبتدائية، وقد تكونت العينة من34 ً) تلميذ ا من تالميذ الصف تنوعت العينة لجميع المراحل التعليمية تقريبًا في الدراسات السابقة التي تناولت الدافعية للتعلم، كما تناولت دراسة لعينة من .)الطالب وعينة من المعلمين، مثل دراسة (الهازمي) ودراسة (البار ،وتنوعت األدوات المستخدمة كاالستبيان والمقاييس والمقابلة واتفقت على استخدام المنهج الوصفي، وركزت األهداف في دراسة الدافعية للتعلم على معرفة دور الخدمات االجتماعية المدرسية في تعزيز الدافعية للتعلم والعوامل المدرسية المؤدية النخفاض الدافعية، والطرق العملية التي يتبعها المدرسون لتحفيز الطالب وإمكانية التنبؤ بنتائج التعليم المختلفة من خالل خصائص خلفية الطالب المختلفة والكشف عن مدركات الطلبة لبيئة التعلم اآلمنة، وبيان عالقتها بالتفاعل االجتماعي بين الطلبة ودافعيتهم للتعلم، ومعرفة العالقة بين دافعية التعلم والتو افق الدراسي للتالميذ وتأثير الشعور باالنتماء للمدرسة على الدافع الداخلي للتعلم، ومعرفة عالقة جودة الحياة بالدافعية للتعلم وتتشابه هذه الدراسات مع الدراسة الحالي ة في ان العينة من المرحلة االبتدائية وتستخدم االستبيان كأداة ولكنها تتميز بربطها بجودة الحياة ال . جودة الحياة المدرسية وعالقتها بالدافعية للتعلم لدى تالميذ المرحلة االبتدائية في المدارس األهلية والحكومية بالسعودية وأجرى بالوك (Bullock, 2017)دراسًًة هدفت لمعرفة العوامل المؤثرة في دافعية الطلبة وتحصًًيلهم األكاديمي في العلوم على عينة م ن طالب الصًًًًًًًف ،الثامن بما فيها العالقة بين المعلم والطالب والعالقات بين ،الطلبة وتوقعات المعلمين في العلوم وتفضًًًًيالت الطلبة المختبر مقابل ،المحاضًًًًرة)والعوامل الشًًًًخصًًًًية للمعلمين (الخدمة في ،المدرسًًًًة الخبرة ،المهنية ،المؤهالت العمر، وإدراك الطلبة لتوقعات المعلمين في ،العلوم وتكونت عينة الدرارسًًًًًًًة من) 150 ) فردًا ،مشًًًًًًًتركًا واعتمد المنهج الوصًًًًًًًفي ،االرتباطي واسًًًًًًًًًًتخدم مقياس الدافعية للتعلم وأظهرت الدراسًًًًًًًًًًة وجود عالقة ارتباطية دالة بين دافعية الطلبة وإدراكهم لتوقعات المعلمين والتوقعات الحقيقية للمعلمين وعمر المعلم والمؤ هل العلمي للمعلم. ( وأجرى أحمد وفضول2018 ) دراسة هدفت لمعرفة العالقة بين دافعية التعلم والتوافق الدراسي لتالميذ مرحلة التعليم األساسي بمحلية شرق النيل، كما هدفت لمعرفة الفروق في دافعية التعلم وسط التالميذ تبعًا للنوق، والفصل الدراسي ومستوى تعليم .الوالدين ولتحقيق هذه األهداف استخدم الباحثان المنهج الوصفي االرتباطي. ( وقد تم اختيار عينة مكونة من570 ) تلميذًا وتلميذة بالطريقة العشوائية الطبقية من القطاعات التعليمية المختلفة بمحلية شرق النيل. وتمثلت أدوات الدراسة في استمارة المعلومات األولية ومقياس دا فعية التعلم، إضافة لمقياس التوافق الدراسي لتالميذ مرحلة التعليم األساسي. : ًوقد توصلت الدراسة لمجموعة من النتائج، أهمها أوال تتميّز دافعية التعلم باالرتفاق بدرجة دالة. ثانيًا: توجد عالقة ارتباطية طردية دالة بين دافعية التعليم والتوافق الدراسي. ثالثًا: توجد عالقة ارتباطية طردية دالة بين دافعية التعلم ومستوى تعليم األب. رابعًا: ال توجد عالقة ارتباطية دالة بين دافعية التعلم ومستوى تعليم األم لدى التالميذ. خامسً ا: ال توجد فروق في دافعية التعلم تبعًا لمتغيّر النوق لدى التالميذ، وأخيرًا ال توجد فروق في دافعية التع لم تبعًا للمستوى الصفي لدى التالميذ. ( بينما أجرت الرايقي2018 ) دراسة هدفت للتعرف على العوامل المدرسية المؤدية النخفاض الدافعية للتعلم من وجهة نظر طالبات المرحلة الثانوية بمدينة جدة، وقد استخدمت الباحثة المنهج الوصفي، وتكونت أدوات الدراسة من (استبيان) قامت الباحثة بإعداده كأداة لجمع البيانات، وتكونت عينة الدراسة من633 طالبة واختيرت العينة بطريقة عشوائية من مدارس التعليم العام بمدينة :جدة. جودة الحياة المدرسية وعالقتها بالدافعية للتعلم لدى تالميذ المرحلة االبتدائية في المدارس األهلية والحكومية بالسعودية مدرسية با ما ي وتوصلت نتائج الدراسات إلى أنه توجد عالقة ارتباطية طردية بين دافعية التعليم والتوافق الدراسي، وأنّ الصحة المدرسية تساهم في تعزيز الدافعية للتعلم، كما أنّ الدافعية للتعلم تعود إلى التشجيع والتحفيز من قبل اآلخرين، وأنّ الشعور السلبي باالنتما ء للمدرس ة له تأثير سلبي على الدافع الداخلي وعلى التعلم، وفي المقابل يؤثر الدافع الداخلي بشكل إيجابي وكبير على التعلم، وأظهرت النتائج أيضً ا تفوق اإلناث على الذكور في مستوى إدراكهنّ لبيئة التعلم اآلمنة، ووجود فروق ذات داللة إحصائية بين مدركات الطلبة لبيئة التعلم اآل منة باختالف نوق المدرسة لصالم المدارس الخاصة، ووجود عالقة إيجابية بين مدركات الطلبة لبيئة التعلم اآلمنة ودافعيتهم للتعلم، ووجود عالقة إيجابية بين مدركات الطلبة لبيئة التعلم اآلمنة وتفاعلهم االجتماعي، وأنّ العوامل المدرسية المرتبط ة بالبيئة الصفية والمؤدية ال نخفاض الدافعية للتعلم كانت بدرجة عالية، واختلفت هذه النتائج مع نتائج دراسة (الهازمي) حيث أرجعت سبب انخفاض الدافعية إلى طريقة تدريس المعلمين، وقلة االهتمام واالستمتاق بما يطرح، وكذلك صعوبة المقررات، وأخيرًا توصلت النتائج إلى أنّ خلفية الطالب المختلفة ودواف ع التعلم يمكن أن تنبئ بنتائج تعليمية مختلفة وأهمية الدافع التعليمي، وتشير إلى أنه يمكن للمدربين تزويد الطالب بخبرات تعليمية أكثر نجاحًا لضمان مزيد من الثقة في قدراتهم التعليمية، وتم االستفادة من هذه الدراسات اف ة ال ل ق ا ا ا دراسات جمعت ما بين :الدافعية للتعلم وجودة الحياة المدرسية ( أجرى لي وآخرونLee et al., 2011 ) دراسة هدفت إلى التعرف على التأثيرات المباشرة للبيئة والتعلم الصفي على تصورات ( التالميذ حول جودة الحياة المدرسية وشعورهم باالنتماء في المدارس االبتدائية، وقد تكونت العينة من34 ً) تلميذ ا من تالميذ الصف الرابع والخامس من المدارس االبتدائية في مدينة شنغهاي شرق الصين ومدينة كونمينج غرب الصين، واستخدمت الدراسة المنهج االستكشافي، كما استعانت الدراسة بمقياس جودة الحياة المدرسية، ومقياس االتجاهات والسلوكيات الجماعية تجاه التعلم في البيئة الصفي ة، ومقياس المشاركة الطالبية لقياس الشعور باالنتماء للمدرسة االبتدائية لدى التالميذ، وقد توصلت الدراسة إلى العديد من IUG Journal of Educational and Psychology Sciences (Islamic University of Gaza) / CC BY 4.0 189 جودة الحياة المدرسية وعالقتها بالدافعية للتعلم لدى تالميذ المرحلة االبتدائية في المدارس األهلية والحكومية بالسعودية جودة الحياة المدرسية وعالقتها بالدافعية للتعلم لدى تالميذ المرحلة االبتدائية في المدارس األهلية والحكومية بالسعودية زهراء سليمان النتائج أهمّها أنّ الفصل الدراسي الذي يركز على العملية التعليمية والتعلم من األقران يعتبر مؤشّ رًا قويًّا على تصورات التالميذ حول جودة الحياة المدرسية أكثر من الفصل الدراسي الذي يركز على األداء الجيّد. جودة الحياة المدرسية وعالقتها بالدافعية للتعلم لدى تالميذ المرحلة االبتدائية في المدارس األهلية والحكومية بالسعودية وجود تأثير إيجابي ذي داللة لتصورات التالميذ حول جودة الحياة المدرسية المتمثلة في الرضا العام والتكامل االجتماعي والعالقات بين التالميذ والمعلمين على شعور التالميذ باالنتماء إلى المدرسة االبتدائية . كما أنه ال يعتبر الشعور باإلنجاز لدى التالميذ من المؤشرات ذات الداللة على الشعور باالنتماء للمدرسة االبتدائية، ويساعد الرضا العام لدى التالميذ عن الحياة المدرسية في تحسين مشاركتهم في التعلم، مما يسهم في تحسين النتائج التعليمية لدى التالميذ في المدارس اال بتدائية. وانخفاض مستوى التأثير المباشر للبيئات التعليمية الصفية على مشاركة التالميذ في التعلم في المدارس االبتدائية، وتعتبر أهمية البيئات التعليمية الصفية في تعزيز المشاركة الطالبية في التعلم من المحددات الهامة المتعلقة بتصورات التالميذ حول جودة الحياة في المدارس االبتدائية. كما أوصت الدراسة بالعديد من التوصيات، أهمها: ضرورة تركيز مديري المدارس والمعلمين على بناء البيئة الصفية التعاونية التي تعزّ ز العالقات اإليجابية بين التالميذ والمعلمين لتحسين مشاركتهم في عملية التعلم، وكذلك ضرورة إجراء المزيد من الدراسات .المستقبلية على الطالب في المراحل التعليمية المختلفة ( كما أجرى غريسم وآخرونGherasim et al., 2011 ) دراسة هدفت لبحث مدى إسهام األفكار التحفيزية في التنبؤ بالتحصيل المدرسي والكفاءة المتصورة لدى الطالب أثناء التفاعل في البيئة التعليمية، وقد تكوّن مجتمع الدر اسة من الطالب في الصف السابع الذين بلغت متوسط أعمارهم13 ( عامًا في المدارس الرومانية، واشتملت عينة الدراسة على350 طالبًا189 ،من اإلناث161 من الذكور) واستخدمت الدراسة المنهج المسحي، كما استعانت بمقياس الدافعية الداخلية في الفصول الدراسية، ومقياس أهداف اإل نجاز من خالل المسم المتعلق بأنماط التعلم التكيفي، ومقياس بيئة التعلم، ومقياس الكفاءة المتصورة لدى الطالب، ومقياس التحصيل الدراسي، وقد توصلت الدراسة إلى عدة نتائج، أهمها أنه يساعد الترابط الصفي والتوجه نحو المهام في التنبؤ بشكل دال على التحصيل المدرسي لدى ا لطالب. ويعتبر الترابط والتعاون الصفي من المؤشرات ذات الداللة على الكفاءة المتصورة لدى الطالب. وتساعد أهداف اإلنجاز القائمة على األسلوب المتعلق باألداء والبراعة في التنبؤ بالتحصيل المدرسي والكفاءة المتصورة لدى الطالب. وعدم وجود دور وسيط للبيئة التعليمية في تأثير األفكار التحفيزية على التحصيل الطالبي والكفاءة المتصورة لدى الطالب. جودة الحياة المدرسية وعالقتها بالدافعية للتعلم لدى تالميذ المرحلة االبتدائية في المدارس األهلية والحكومية بالسعودية زهراء سليمان المدارس األهلية والحكومية بالسعودية توجد عالقة ارتباطية بين المناخ المدرسًي ودافعية التعلم لدى عينة من تالميذ السًنة المتوسًطة وأوصًت بما يلي: (االهتمام بالمناخ المدرسًًًًًًي من خالل فتم المجال للتالميذ للتعبير عن آرائهم وأفكارهم، وتعزيز العالقات اإلنسًًًًًًانية السًًًًًًليمة بين أفراد الطاقم التربوي من خالل تبنّي سًًًياسًًًات تقوم على االحترام والمشًًًاركة والثقة المتبادلة. والتقليل من سًًًلبيات المؤسًًًسًًًة التربوية والعمل على توطيد العالقات االجتماعية السًًًًل يمة. وتعزيز العالقات بين األسًًًًرة والمدرسًًًًة ومختلف المؤسًًًًسًًًًات االجتماعية من أجل ملء الفرا الذي يعيشه المراهقون، وكذلك دعم األنشطة الالصفية التي من شأنها توطيد العالقات بين التالميذ واألساتذة. والتركيز على التعلم الذاتي للتالميذ من خالل اإلسًًًًًتراتيجيات التي تركز على المتعلم. وإعداد برامج إرشًًًًًًادية لتنمية دافعية التعلم ومهارات التفكير واالسًًًًًًتذكار لدى التالميذ. تنوعت العينة للمراحل التعليمية االبتدائية والمتوسًًًًًًًطة والثانوية في الدراسًًًًًًًات السًًًًًًًابقة التي تناولت الدافعية للتعلم وعالقتها بالحيا ة المدرسًًًية، وجميعها تناولت العينة من الطالب، واقتصًًًرت األدوات على المقاييس فقط دون المقابلة ، واتفقت على اسًًًتخدام المنهج الوصًًًفي ما عد ا دراسًًًة غريسًًًم حيث اسًًًتخدمت المنهج المسًًًحي. كما أنّ األهداف في هذه الدراسًًًات اهتمت بالتعرّف على عالقة المناخ المدرسًًًًًًًًًًًًي بالدافعية للتعلم وبيان عالقة الدافعية باالندماج المدرسًًًًًًًًًًًًي وتحديد تأثيرات تصًًًًًًًًًًًًورات الطالب عن جودة الحياة المدرسًًًًًًية على مسًًًًًًتويات الدافع للتعلم والتعرف على التأثيرات المباشًًًًًًرة للبيئة والتعلم الصًًًًًًفي على تصًًًًًًورات الطالب حول جودة الحياة المدرسًًية وشًًعورهم باالنتماء، وبحث إلى أيّ مدى تسًًهم األفكار التحفيزية في التنبؤ بالتحصًًيل المدرسًًي والكفاءة المتصًًورة لًًدى الطالب أثنًًاء التفًًاعًًل في البيئًًة التعليميًًة، كمًًا بيّنًًت نتًًائج درا ،سًًًًًًًًًًًًًًًة (حليم2015 ) وجود عالقًًة بين الًًدافعيًًة األكًًاديميًًة واالندماج المدرسًًي، وتوصًًًلت نتائج دراسًًة (غوسًًترلوقلو) بإمكانية تنبؤ جودة الحياة المدرسًًية بالدافعية للتعلم، وكذلك اتفقت معهم نتائج دراسًًة (لي) في أنّ الرضًًا العام لدى الطالب عن الحياة المدرسًًية يسًًاعد في تحسًًين مشًًا ركة الطالب في التعلم؛ مما يسًًهم في تحسًًين النتائج التعليمية، ووجود تأثير إيجابي لتصًًورات الطالب حول جودة الحياة المدرسًًية على شًًعور الطالب باالنتماء إلى المدرسًًًة، وأنّ الفصًًًل الدراسًًًي الذي يركز على العملية التعليمية والتعلم من األقران يعتبر مؤشًًً ّ رًا قويًّا على تصًًًور ات الطالب حول ،جودة الحياة المدرسًية، ودعمتها نتائج دراسًة (غريسًم2011 ) في أنه يسًاعد الترابط الصًفي في التنبؤ بشًكل دال على التحصًيل المدرسًًًًًًًًي لدى الطالب. جودة الحياة المدرسية وعالقتها بالدافعية للتعلم لدى تالميذ المرحلة االبتدائية في المدارس األهلية والحكومية بالسعودية كما أوصت الدراسة بالعديد من التوصيات، أهمها: ضرورة إجراء المزيد من الدراسات المستقبلية التي تتناول العوامل المؤثرة على الدافعية للتعلم لدى الطالب، وكذلك ضرورة تسليط الضوء على أساليب.تعزيز التحصيل الدراسي والكفاءة المتصورة لدى الطالب في التعلم ( كما قام حليم2015 ) بدراسًًًًًًًًًًًًة هدفت إلى التعرف على العالقة بين كلٍّّ من الدافعية األكاديمية واالندماج المدرسًًًًًًًًًًًًي لدى تالميذ المرحلة اإلعدادية، وقد اسًًًتخدم الباحث المنهج الوصًًًفي، وتكونت أدوات الدراسًًًة من مق ياسًًًي الدافعية األكاديمية واالندماج ( المدرسًًًًًي، وتكونت عينة الدراسًًًًًة من380 ) طالبًا وطالبة من المرحلة اإلعدادية، وتوصًًًًًلت النتائج إلى وجود عالقة بين الدافعية .األكاديمية واالندماج المدرسي وأجرى غوسًترلوقلوKösterelioglu,2015)) دراسًة هدفت إلى تحديد تأثيرات تصًورات طالب المدارس الثانوية عن جودة .الحياة المدرسية على مستويات الدافع للتعلم ( وقد أجريت الدراسة على عينة من طالب المدارس الثانوية بلغ عددها2371 ) طالبًا ( في مقاطعة أماسًًيا في فصًًل الخريف من العام الدراسًًي2014 ). تم اختيار عينة الدراسًًة بمسًًاعدة طريقة أخذ العينات .العنقودية ،تم جمع البيًانًات عبر نموذج المعلومًات الشًًًًًًًًًًًًًًخصًًًًًًًًًًًًًًيًة التي طورهًا البًاحثون، ومقيًاس التحفيز األكًاديمي الًذي طورتًه بوزانوغلو ومقياس جودة الحياة المدرسًًًًًًية الذي طورته سًًًًًًاري. واسًًًًًًتخدام تحليل االنحدار المتعدد. وتبيّن النتائج بإمكانية تنبؤ جميع متغيّرات جودة الحياة.المدرسية بالدوافع األكاديمية ( كما قام لكحل2017 ) بدراسًًة هدفت إلى التعرّف على عالقة المناخ المدرسًًي بالدافعية للتعلم لدى عينة من تالميذ السًًنة ( رابعة متوسًًًًط. وقد تم االعتماد على المنهج الوصًًًًفي، كما تكوّنت عينة الدراسًًًًة من60) تلميذًا وتلميذة اختيروا بطريقة عشًًًًوا ئية طبقية، طبّق عليهم مقياس المناخ المدرسًًي ومقياس دافعية التعلم. وبعد المعالجة اإلحصًًائية للمعطيات. أسًًفرت النتائج إلى أنه ال IUG Journal of Educational and Psychology Sciences (Islamic University of Gaza) / CC BY 4.0 190 جودة الحياة المدرسية وعالقتها بالدافعية للتعلم لدى تالميذ المرحلة االبتدائية في المدارس األهلية والحكومية بالسعودية ويعتبر الترابط والتعاون الصًًًًًًًًفي من المؤشًًًًًًًًرات ذات الداللة على الكفاءة المتصًًًًًًًًورة لدى الطالب، بينما اختلف مع هذه ا لدراسًًًًًًًات في عدم وجود دور وسًًًًًًًيط للبيئة التعليمية في تأثير األفكار التحفيزية على التحصًًًًًًًيل الطالبي والكفاءة المتصًًًًًًورة لدى الطالب، واتفقت معه نتائج دراسًًًًًًة (لكحل) التي أظهرت أنه ال توجد عالقة ارتباطية بين المناخ المدرسًًًًًًي ودافعية .التعلم .التعلم ومن خالل العرض السابق لهذه ال دراسات جميعها تم االستفادة منها في اعتماد المنهج الوصفي الرتباطي، واختيار العينة من المرحلًة االبتًدائيًة؛ ألنّ البحوث في هًذه العينًة في جودة الحيًاة المًدرسًًًًًًًًًًًًًًيًة في الوطن العربي قليلًة جًدًّا، ومقًارنًة النتًائج بين المدرسًًًًًة الحكومية واألهلية لمعرفة مسًًًًًتوى الخدمات المقدم ة في هذه المؤسًًًًًسًًًًًات، وحسًًًًًب علم الباحثة لم تظهر دراسًًًًًة من هذه الدراسًًًًات تناولت مفهوم جودة الحياة المدرسًًًًية وربطتها بمتغيّر الدافعية للتعلم في المرحلة االبتدائية في العالم العربي، وهذا ما دف ع :الباحثة لدراسة هذا البحث، وتصو الباحثة فروض الدراسة كالتالي فروض البح :ث 1 . توجًد عالقًة ارتبًاطيًه موجبًة دالًة إحصًًًًًًًًًًًًًًًائيًًّا بين جودة الحيًاة المًدرسًًًًًًًًًًًًًًيًة والًدافعيًة للتعلم لًدى تلميًذات المًدارس )(الحكومية، واألهلية 2 . .ال توجد فروق ذات داللة إحصائية بين تلميذات المدارس (الحكومية، واألهلية) في جودة الحياة المدرسية 3 . ال توجد فروق ذات داللة.إحصائية بين تلميذات المدارس (الحكومية، واألهلية) في دافعية التعلم 1 . توجًد عالقًة ارتبًاطيًه موجبًة دالًة إحصًًًًًًًًًًًًًًًائيًًّا بين جودة الحيًاة المًدرسًًًًًًًًًًًًًًيًة والًدافعيًة للتعلم لًدى تلميًذات المًد )(الحكومية، واألهلية 2 . .ال توجد فروق ذات داللة إحصائية بين تلميذات المدارس (الحكومية، واألهلية) في جودة الحياة المدرسية 3 . ال توجد فروق ذات داللة.إحصائية بين تلميذات المدارس (الحكومية، واألهلية) في دافعية التعلم 191 IUG Journal of Educational and Psychology Sciences (Islamic University of Gaza) / CC BY 4.0 المدارس األهلية والحكومية بالسعودية 4 . .يمكن التنبؤ بالدافعية للتعلم من خالل جودة الحياة المدرسية لدى تلميذات المدارس الحكومية واألهلية منهجية البحث وإجراءاته :منهج البحث اسًًتخدمت الباحثة (المنهج الوصًًفي) بشًًقّيه (االرتباطيا المقار ن)، "وهو ذلك النوق من أسًًاليب البحث الذي يمكن بواسًًطته ،معرفة ما إذا كانت ثمة عالقة بين متغيّرين أو أكثر، معرفة درجة تلك العالقة". IUG Journal of Educational and Psychology Sciences (Islamic University of Gaza) / CC BY 4.0 :أوالً : مقياس جودة الحياة المدرسية ،أعدّه (ويليامز وباتين1981)، وترجمه (نواف العصًًًًًًًًًيمي)، ويهدف إلى معرفة جود ة الحياة المدرسًًًًًًًًًية (رضًًًًًًًًًا التلميذ عن ( المدرسًًة)، وقد تكوّن المقياس في صًًورته النهائية من40 ٍّّ) عبارة، وطريقة اإلجابة على المقياس اختيار إجابة من (نعم، إلى حد ( ما، ال)، وتُعطى الدرجة0 ( ) لإلجابة بًًًًًً (ال)، والدرجة1 ( ) لإلجابة بًًًًًً (إلى حدٍّّ ما)، والدرجة2) لإلجابة بًًًًًً (نعم)، وينعكس ذلك ( في العبارات السلبية بالمقياس، وهي العبارات رقم12 ، 19 ، 25 ، 35 ، 38 ، 39 ، 40 .) )تم حسًًاب صًًدق المقياس بحسًًاب معامل االرتباط بين درجة كلّ مفردة والدرجة الكلية للمقياس (محذوفًا منها درجة المفردة ًبًافتراض بقيًة المفردات محكًًّا للمفردة، وقًد وُج د أنّ جميع معًامالت االرتبًاط دالًة إحصًًًًًًًًًًًًًًائيًًّا، وقًد تراوحًت قيم معًامالت االرتبًاط للمقياس ما بين( 0.618 ، 0.721 ،) .وجميعها معامالت ارتباط جيّدة وبالنسًًًًًبة لثبات المقياس فقد تم حسًًًًًاب الثبات للمقياس ككل بطريقة التجزئة النصًًًًًًفية، وكانت معامالت الثبات على النحو التالي، مع( امل الثبات للمقياس بطريقة سًًًبيرمانا براون تسًًًاوي0.711 ( )، وبطريقة جتمان0.648 )، وهي معامالت ثبات عالية ( تدلّ على أنّ الميقاس ككل ثابت، كما تم التحقق من ثبات المقياس باسًًًتخدام طريقة كودر ريتشًًًاردسًًًونK-R21 )، وبلغ معامل ( الثبات0.72 ٍّ)، وهو معامل ثبات عال.للمقياس، ويدلّ على أنّ المقياس ككل ثابت ( تم عرض المقياس بصًًًًًورته األولية على9 ) من المحكمين* من أعضًًًًًاء الهيئة التعليمية ت من ذوي التخصًًًًًصًًًًًات التربوية و ال نفسًًًًًًًًًًًًية في عدد من الجامعات السًًًًًًًًًًًًعودية المختلفة ، كذلك جامعة اإلسًًًًًًًًًًًًكندرية وذلك بهدف الوقوف على أرائهم حول عبارات . المقياس ومدى مناسبتها ووضوحها وسالمتها اللغوية ا وبنًاءً على التعًديالت واالقتراحًات التي أبًداهًا المحكّمون، قًامًت البًاحثًة بًإجراء التعًديالت الالزمًة التي اتفق عليهًا غًالبيًة ( المحكّمين، من تعديل بعض العبارات وحذف عبارات أخرى، حتى أصًًًًًًًًًًًًًبم المقياس في صًًًًًًًًًًًًًورته النهائية ملحق رقم4 )، وقد تم ( اإلبقاء على جميع المفردات التي حظت بنسًًًًًًبة موافقة تفوق80.0 ،) لألسًًًًًًاتذة المحكّمين، وحذف كلّ مفردة خارج هذه النسًًًًًًبة% حيث إ( نّ المقياس في صًًًًًًورته األولية كان عدد عباراته46 )، وتم التعديل بناءً على المحكّمين في وضًًًًًًع محاور وأخطاء إمالئية ( وحذف بعض العبارات وتعديل عبارات أخرى ليصًًًًًًًًًًًًًًبم مجموق العبارات40 ( ) عبارة، حيث تم حذف العبارات رقم3 ، 5 ، 10 ، 29 ، 35 ، 37 .) : *أسماء السادة المحكمين 1 - أ د ا فاطمة خلف الهويش– أستاذ بجامعة اإلمام عبد الرحمن بن فيصل 2 - أ د ا سامية األنصاري– . أستاذ بجامعة اإلسكندرية 3 - أ د ا أحمد صابر أحمد الشركسي– أستاذ مشارك . جودة الحياة المدرسية وعالقتها بالدافعية للتعلم لدى تالميذ المرحلة االبتدائية في المدارس األهلية والحكومية بالسعودية سنوات ونصف • العينة االستطالعية: تم اختيار عينة مكونة( من196 ،) تلميذة من تالميذ المرحلة االبتدائية بغرب الدمام بطريقة عشوائية بهدف التحقق من الخصًًًًًًائص السًًًًًًيكومترية ألدوات البحث من خالل إيجاد معامالت الصًًًًًًدق والثبات لمقياسًًًًًًي البحث .وكان التطبيق الكتروني عن بعد • ( العينة األسًًًًاسًًًًية: قامت الباحثة باختيار عينة عشًًًًوائية بسًًًًيطة مكونة من386 ) تلميذة من تلميذات المدارس االبتدائية في الصًًف الخامس والسًًادس (األهلية والحكومي) بغرب الدمام، وقد اعتمدت الباحثة على معادلة سًًتيفن ثامبسًًون لتحديد ( حجم عينة البحث، وقد حصًًًلت الباحثة على386 ) اسًًًتجابة مكتملة وجاهزة لعملية التحليل وكان التطبيق الكتروني عن .بعد :خصائص أفراد عينة البحث :يتصف أفراد عينة البحث بعدد من الخصائص تتمثل في: نوق المدرسة، الصف الدراسي، نوضحها فيما يلي 1 - نوق المدرسة :خصائص أفراد عينة البحث :يتصف أفراد عينة البحث بعدد من الخصائص تتمثل في: نوق المدرسة، الصف الدراسي، نوضحها فيما يلي 1 - نوق المدرسة ( جدول رقم3 ) : توزيع عينة البحث وفقًا لمتغيّر نوع المدرسة ن وع المدرسة التكرارات النسبة المئوية حكومية 354 91.7 أهلية 32 8.3 اإلجمالي 386 100.0 ( يوضًًًًًم الجدول رقم3) توزيع عينة الدراسًًًًًة وفقًا لمتغيّر نوق المدرسًًًًًة، حيث إنّ الغالبية العظمى من أفراد البحث بمدارس ( حكومية بتكرار354 ( ) تلميذة وبنسبة91.7 )، في حين% ( أنّ هناك32 ( ) تلميذة بنسبة8.3 .) بمدارس أهلية% ( جدول رقم4 ) : توزيع عينة البحث وفقًا لمتغيّر الصف الدراسي الصف الدراسي التكرارات النسبة المئوية خامس ابتدائي 194 50.3 سادس ابتدائي 192 49.7 اإلجمالي 386 100.0 ( يوضًًًًًم الجدول رقم3) توزيع عينة الدراسًًًًًة وفقًا لمتغيّر نوق المدرسًًًًًة، حيث إنّ الغالبية العظمى من أفراد البحث بمدارس ( حكومية بتكرار354 ( ) تلميذة وبنسبة91.7 )، في حين% ( أنّ هناك32 ( ) تلميذة بنسبة8.3 .) بمدارس أهلية% ( جدول رقم4 ) : توزيع عينة البحث وفقًا لمتغيّر الصف الدراسي الصف الدراسي التكرارات النسبة المئوية خامس ابتدائي 194 50.3 سادس ابتدائي 192 49.7 اإلجمالي 386 100.0 192 زهراء سليمان المدارس األهلية والحكومية بالسعودية ( يتضًًًًًًًًم من خالل الجدول رقم4 ) أنّ هناك( 194 ( ) تلميذة يمثلن ما نسًًًًًًًًبته50.3 ّ) بالصًًًًًًًًف الخامس االبتدائي، في حين أن% ( هناك192 ( ) تلميذة يمثلن ما نسبته49.7 .) بالصف السادس االبتدائي% :أدوات البحث جودة الحياة المدرسية وعالقتها بالدافعية للتعلم لدى تالميذ المرحلة االبتدائية في المدارس األهلية والحكومية بالسعودية (العسًًًً ّ اف2003م، ص283 )، فالمنهج الوصًًًًفي االرتباطي لمعرفة العالقة بين جودة الحياة المدرسًًًًًًًًًًية والدافعية للتعلم، أما المنهج الوصًًًًًًًًًًفي الم قارن لتحديد الفروق ومعرفة داللتها .)اإلحصائية بين جودة الحياة المدرسية والدافعية للتعلم تبعًا لمتغيّرات الدراسة (نوق المدرسة، الصف الدراسي :مجتمع البحث يتكون مجتمع البحث من جميع التلميذات في المدارس االبتدائية في الصًًًًًًًًًًًًف الخامس والسًًًًًًًًًًًًادس (األهلية والحكومية) في ( ّغرب الًدمًام والبًالغ عًددهن9844 ( ) بواقع9107 () تلميًذة في المًدارس الحكوميًة و737 ) تلميًذة في المًدارس األهليًة توتتراوح أعمارهن بين11 و12 سنة ومتوسط عمر العينة10 . IUG Journal of Educational and Psychology Sciences (Islamic University of Gaza) / CC BY 4.0 :أوالً : مقياس جودة الحياة المدرسية بجامعة اإلمام عبد الرحمن بن فيصل 4 - أ د ا جمال عبد الحميد جادو– . أستاذ مشارك بجامعة القصيم 5 - أ د ا حلمي محمد حلمي الفيل– . :ثانيًا: مقياس الدافعية للتعلم :ثانيًا: مقياس الدافعية للتعلم ( أعده شًًًًًًًًادي الصًًًًًًًًرايرة2015 ( ) وطبق على البيئة األردنية و يتكون المقياس في صًًًًًًًًورته النهائية من37) عبارة تتناول الدافعية للتعلم، وهي مقسًً ّ مة على بُعدين، حيث يتناول المقياس الدافعية الداخلية والخارجية للتعلم، ويتكون بُعد الدافعية الداخلية من ( 19 ( ) عبًًارة وهي1 ، 2 ، 10 ، 18 ، 19 ، 20 ، 21 ، 22 ، 23 ، 24 ، 27 ، 28 ، 30 ، 31 ، 32 ، 33 ، 34 ، 35 ، 36 )، ويتكون بُعًًد الًًدافعيًًة الخًًارجيًًة ( من18 ( ) عبًًارة، وهي3 ، 4 ، 5 ، 6 ، 7 ، 8 ، 9 ، 11 ، 12 ، 13 ، 14 ، 15 ، 16 ، 17 ، 25 ، 26 ، 29 ، 37 .) وللتحقّق من الخصًائص السًيكومرتية للمقياس قامت الباحثة بعرض المقياس على مجموعة من المحكّمين المتخصً ّ صًين في علم النفس التربوي والقياس والتقويم واإلرشًاد النفسًي والتربوي، والت ربية الخاصًة بجامعة مؤتة، وفي ضًوء اقتراحاتهم تم حذف بعض ( العبارات وتم التعديل على عبارات أخرى، حتى ظهرت الصورة النهائية من المقياس التي تحتوي على40 .) عبارة كما قامت الباحثة بالتحقق من صًًًدق االتسًًًاق الداخلي باسًًًتخدام معامل ارتباط بيرسًًًون، حيث تراوحت قيم معامل ا الرتباط ( لعبًًارات المقيًًاس مًًا بين0.31 ، 0.56 )، وجميعهًًا موجبًًة، ممًًا يعني وجود عالقًًة ارتبًًاطيًًة موجبًًة ومتوسًًًًًًًًًًًًًًطًًة بين المجًًال .والعبارات، وذات داللة إحصائية، األمر الذي يدلل على صدق المقياس ا وللتحقّق من الخصًائص السًيكومرتية للمقياس قامت الباحثة بعرض المقياس على مجموعة من المحكّمين المتخصً ّ صًين في علم النفس التربوي والقياس والتقويم واإلرشًاد النفسًي والتربوي، والت ربية الخاصًة بجامعة مؤتة، وفي ضًوء اقتراحاتهم تم حذف بعض ( العبارات وتم التعديل على عبارات أخرى، حتى ظهرت الصورة النهائية من المقياس التي تحتوي على40 .) عبارة وللتحقّق من الخصًائص السًيكومرتية للمقياس قامت الباحثة بعرض المقياس على مجموعة من المحكّمين المتخصً ّ صًين في علم النفس التربوي والقياس والتقويم واإلرشًاد النفسًي والتربوي، والت ربية الخاصًة بجامعة مؤتة، وفي ضًوء اقتراحاتهم تم حذف بعض ( العبارات وتم التعديل على عبارات أخرى، حتى ظهرت الصورة النهائية من المقياس التي تحتوي على40 .) عبارة كما قامت الباحثة بالتحقق من صًًًدق االتسًًًاق الداخلي باسًًًتخدام معامل ارتباط بيرسًًًون، حيث تراوحت قيم معامل ا الرتباط ( لعبًًارات المقيًًاس مًًا بين0.31 ، 0.56 )، وجميعهًًا موجبًًة، ممًًا يعني وجود عالقًًة ارتبًًاطيًًة موجبًًة ومتوسًًًًًًًًًًًًًًطًًة بين المجًًال .والعبارات، وذات داللة إحصائية، األمر الذي يدلل على صدق المقياس ( وللتحقق من ثبات المقياس تم تطبيقه على عينة استطالعية قوامها30) فردًا، وبلغ م( عامل الثبات الكلي للمقياس0.79 ،) ( وبلغ لمجًال الًدافعيًة الخًارجيًة0.851 ( )، وللًدافعيًة الًداخليًة0.60 ،)، هًذا يًدلّ على أنّ المقيًاس يتمتع بًدرجًة مقبولًة من الثبًات .وبالتالي يمكن االعتماد عليه في التطبيق الميداني للدراسة علم النفس التربوي والقياس والتقويم واإلرشًاد النفسًي والتربوي، والت ربية الخاصًة بجامعة مؤتة، وفي ضًوء اقتراحاتهم تم حذف بعض ( العبارات وتم التعديل على عبارات أخرى، حتى ظهرت الصورة النهائية من المقياس التي تحتوي على40 .) عبارة كما قامت الباحثة بالتحقق من صًًًدق االتسًًًاق الداخلي باسًًًتخدام معامل ارتباط بيرسًًًون، حيث تراوحت قيم معامل ا الرتباط ( لعبًًارات المقيًًاس مًًا بين0.31 ، 0.56 )، وجميعهًًا موجبًًة، ممًًا يعني وجود عالقًًة ارتبًًاطيًًة موجبًًة ومتوسًًًًًًًًًًًًًًطًًة بين المجًًال .والعبارات، وذات داللة إحصائية، األمر الذي يدلل على صدق المقياس ى يأا ( وللتحقق من ثبات المقياس تم تطبيقه على عينة استطالعية قوامها30) فردًا، وبلغ م( عامل الثبات الكلي للمقياس0.79 ،) ( وبلغ لمجًال الًدافعيًة الخًارجيًة0.851 ( )، وللًدافعيًة الًداخليًة0.60 ،)، هًذا يًدلّ على أنّ المقيًاس يتمتع بًدرجًة مقبولًة من الثبًات .وبالتالي يمكن االعتماد عليه في التطبيق الميداني للدراسة وللتحقق من الكفاءة السيكومترية لمقياس جودة ال : حياة المدرسية بالبحث الحالي استخدمت ا ا ( تم عرض المقياس بصًًًًًورته األولية على9 ) من المحكمين* من أعضًًًًًاء الهيئة التعليمية ت من ذوي التخصًًًًًصًًًًًات التربوية و النفسًًًًًًًًًًًًية في عدد من الجامعات السًًًًًًًًًًًًعودية المختلفة ، كذلك جامعة اإلسًًًًًًًًًًًًكندرية وذلك بهدف الوقوف على أرائهم حول عبارات . :ثانيًا: مقياس الدافعية للتعلم المقياس ومدى مناسبتها ووضوحها وسالمتها اللغوية وبنًاءً على التعًديالت واالقتراحًات التي أبًداهًا المحكّمون، قًامًت البًاحثًة بًإجراء التعًديالت الالزمًة التي اتفق عليهًا غًالبيًة ( المحكّمين، من تعديل بعض العبارات وحذف عبارات أخرى، حتى أصًًًًًًًًًًًًًبم المقياس في صًًًًًًًًًًًًًورته النهائية ملحق رقم6 )، وقد تم اإلبقاء على جميع المفردات التي حظيت بنسًًًًًبة م( وافقة تفوق80.0 ،) لألسًًًًًاتذة المحكّمين، وحذف كلّ مفردة خارج هذه النسًًًًًبة% ( حيًث إنّ المقيًاس في صًًًًًًًًًًًًًًورتًه األوليًة كًان عًدد عبًاراتًه40 ( ) عبًارة موزعًة على محورين18 عبًارة الًدافعيًة الخًارجيًة و22 عبارة الدافعية الداخلية)، وتم التعديل بناءً على المحكّمين في وضع محاور وأخ طاء إمالئية وحذف بعض العبارات وتعديل عبارات أخرى ليصًبم مجموق العبارات37 ( عبارة، حيث تم حذف العبارات رقم2 ، 15 ، 25 )، ليُصًبم عددها في محور الدافعية الخارجية ( 18 ( ) عبارة، والدافعية الداخلية19 .) عبارة IUG Journal of Educational and Psychology Sciences (Islamic University of Gaza) / CC BY 4.0 :أوالً : مقياس جودة الحياة المدرسية أستاذ مشارك بجامعة االسكندرية 193 IUG Journal of Educational and Psychology Sciences (Islamic University of Gaza) / CC BY 4.0 IUG Journal of Educational and Psychology Sciences (Islamic University of Gaza) / CC BY 4.0 193 جودة الحياة المدرسية وعالقتها بالدافعية للتعلم لدى تالميذ المرحلة االبتدائية في المدارس األهلية والحكومية بالسعودية زهراء سليمان المدارس األهلية والحكومية بالسعودية 6 - أ د ا سومية شكري محمد محمود- .أستاذ مشارك بجامعة اإلمام عبد الرحمن بن فيصل 7 - أ د ا فيصل عبد الفتاح– .أستاذ مشارك بجامعة اإلمام عبد الرحمن بن فيصل 8 - د ا نعمة محمدعبد السالم– أستاذ مشارك بجامعة اإلمام عبد الرحمن بن فيصل 9 -أدا مها عبد المنعم أبو القاسم- أستاذ مساعد بجامعة الملك فيصل ي قا ي تم التأكد من االتسًًًًًًًًًًاق الداخلي لمقياس جودة الحياة المدرسًًًًًًًًًًية باسًًًًًًًًًًتخدام معامل االرتباط بيرسًًًًًًًًًًون بالتطبيق على عينة ( اسًًًًًًًًًًتطالعية مكونة من196 ) تلميذة، حيث تم حسًًًًًًًًًًاب معامل االرتباط بين درجة كلّ عبارة من عبارات المقياس بالدرجة الكلية للبُعد الذي تنتمي إليه العبارة، كما توضم ذلك الجداو.ل التالية ( جدول5 ): معامالت ارتباط بيرسون لعبارات أبعاد مقياس مقياس جودة = الحياة المدرسية بالدرجة الكلية للمقياس (ن196 ) العبارة معامل االرتباط العبارة معامل االرتباط العبارة معامل االرتباط العبارة معامل االرتباط 1 0.742 ** 11 0.587 ** 21 0.527 ** 31 0.662 ** 2 0.769 ** 12 0.715 ** 22 0.625 ** 32 0.607 ** 3 0.729 ** 13 0.613 ** 23 0.507 ** 33 0.635 ** 4 0.595 ** 14 0.886 ** 24 0.595 ** 34 0.650 ** 5 0.508 ** 15 0.587 ** 25 0.547 ** 35 0.622 ** 6 0.655 ** 16 0.778 ** 26 0.603 ** 36 0.621 ** 7 0.684 ** 17 0.769 ** 27 0.519 ** 37 0.578 ** 8 0.710 ** 18 0.731 ** 28 0.526 ** 38 0.702 ** 9 0.554 ** 19 0.668 ** 29 0.607 ** 39 0.739 ** 10 0.680 ** 20 0.716 ** 30 0.823 ** 40 0.748 ** دال عند مستوى0.01 194 IUG Journal of Educational and Psychology Sciences (Islamic University of Gaza) / CC BY 4 0 دال عند مستوى0.01 ( يتضًًًًًًًًًًًًًًم من خالل الجًدول رقم5 ( ) أنّ جميع العبًارات دالًة عنًد مسًًًًًًًًًًًًًًتوى0.01 )، حيًث تراوحًت قيم معًامالت االرتبًاط ( لعبًارات المقيًاس مًا بين0.508 ، 0.886 )، وجميعهًا معًامالت ارتبًاط جيًّدة، وهًذا يعطي داللًة على ارتفًاق معًامالت االتسًًًًًًًًًًًًًًاق .الداخلي، كما يشير إلى مؤشرات صدق مرتفعة وكافية يمكن الوثوق بها في تطبيق أداة الدراسة الحالية ثبات مقياس جودة الحياة :المدرسية قامت الباحثة بقياس ثبات مقياس جودة الحياة المدرسية باستخدام معامل ثبات الفاكرونباخ، والتجزئة النصفية بعد التصحيم ( باستخدام معامل جتمان، والجدول رقم6 :) يوضم معامل الثبات للمقياس، وذلك على النحو التالي ( جدول6 ): معامل ألفا كرونباخ = والتجزئة النصفية لقياس ثبات مقياس جودة الحياة المدرسية (ن196 ) المحور معامل الثبات ألفا كرونباخ جتمان الثبات الكلي 0.900 0.919 ( يوضًًًًًًم الجدول رقم6 ) أنّ مقياس جودة الحياة المدرسًًًًًًية يتمتع بمعامالت ثبات مرتفعة يمكن الوثوق بها في تطبيق أداة الدراسًًًًًًة .الحالية ( يتضًًًًًًًًًًًًًًم من خالل الجًدول رقم5 ( ) أنّ جميع العبًارات دالًة عنًد مسًًًًًًًًًًًًًًتوى0.01 )، حيًث تراوحًت قيم معًامالت االرتبًاط ( لعبًارات المقيًاس مًا بين0.508 ، 0.886 )، وجميعهًا معًامالت ارتبًاط جيًّدة، وهًذا يعطي داللًة على ارتفًاق معًامالت االتسًًًًًًًًًًًًًًاق .الداخلي، كما يشير إلى مؤشرات صدق مرتفعة وكافية يمكن الوثوق بها في تطبيق أداة الدراسة الحالية ثبات مقياس جودة الحياة :المدرسية 194 IUG Journal of Educational and Psychology Sciences (Islamic University of Gaza) / CC BY 4.0 IUG Journal of Educational and Psychology Sciences (Islamic University of Gaza) / CC BY 4.0 زهراء سليمان المدارس األهلية والحكومية بالسعودية :ثالثًا: صدق المقارنة الطرفية للتأكد من قدرة مقياس االتجاه نحو الخدمات التعليمية والطالبية على التميز بين استجابات المفحوصين ، استخدمت الباحثة ( طريقة المقارنة الطرفية ، حيث قامت بتطبيق المقياس على العينة االستطالعية مكونة من196 طالبة) تم ترتيب درجاتهن ترتيبا تنازليا ، وتم الحصول على أعلى27 من درجات أفراد العينة االستطالعية على مقياس الدافعية للتعلم وأدنى% 27 من درجاتهم% على نفس المقياس ، وبذلك أصبم لدى الباحثة مجموعتين : مجموعة االرباعي األعلى ومجموعة االرباعي األدنى ، وحسبت الباحثة المتوسط الحسابي واالنحراف المعياري لدرجات كل مج موعة على المقياس ، والجدول التالي يوضم ذلك . (جدول9 ): (نتائج اختبار (ت) لعينتين مستقلتينindependent sample t-test) بين المجموعات العليا والمجموعات = الدنيا في درجات الطالبات بالعينة االستطالعية على مقياس الدافعية للتعلم (ن106 ) المجموعات العدد المتوسط الحسابي االنحراف المعياري "قيمة "ت الداللة اإلحصائية الدافعية الداخلية ( 27 )% أعلى التوزيع 53 25.23 1.72 21.950 0.001 ( 27 )% أدنى التوزيع 53 17.62 1.18 الدافعية الخارجية ( 27 )% أعلى التوزيع 53 29.32 1.52 15.635 0.001 ( 27 )% أدنى التوزيع 53 23.87 1.11 الدرجة الكلية ( 27 )% أعلى التوزيع 53 53.19 2.46 19.745 0.001 53 42.47 1.62 = الدنيا في درجات الطالبات بالعينة االستطالعية على مقياس الدافعية للتعلم (ن106 ) ( يالحظ من الجدول السابق أن هناك فروقاً دالة إحصائياً عند مستوى01 , 0 ) بين متوسط درجات مجموعة إلرباعي األعلى و . متوسط درجات مجموعة اإلرباعي األدنى ، على مقياس الدافعية للتعلم ، وهذا دليل على صدقه وقدرته على التمييز :ثبات مقياس الدافعية للتعلم قامت الباحثة بقياس ثبات مقياس الدافعية للتعلم باستخدام معامل ثبات ألفا كرونباخ، وا( لتجزئة النصفية، والجدول رقم10 ) :يوضم معامل الثبات للمقياس، وذلك على النحو التالي ( جدول10 ) : = معامل ألفا كرونباخ والتجزئة النصفية لقياس ثبات مقياس الدافعية للتعلم (ن196 ) م المحور معامل الثبات ألفا كرونباخ التجزئة النصفية 1 الدافعية الداخلية 0.867 0.826 2 الدافعية الخارجية 0.805 0.822 الثبات الكلي 0.891 0.835 ( يوضًًم الجدول رقم10 .) أنّ مقياس الدافعية للتعلم يتمتع بمعامالت ثبات مرتفعة يمكن الوثوق بها في تطبيق أداة الدراسًًة الحالية عرض نتائج البحث وتفسيرها: نتائج البحث المتعلقة بالفرض األول الذي ينصّ على : "توجد عالقة ارتباطية موجبة دالة إحصًًًًًًًًًًًًًائيًّا بين جودة الحياة ا لمدرسًًًًًًًًًًًًًية .")والدافعية للتعلم لدى تلميذات المدارس (الحكومية، واألهلية ية والدافعية للتعل لدى تالميذ المرحلة االبتدائية بغرب الدما ، ت طبيعة العالقة بين جودة الحياة المدرس وللتعرف عل ( يالحظ من الجدول السابق أن هناك فروقاً دالة إحصائياً عند مستوى01 , 0 ) بين متوسط درجات مجموعة إلرباعي األعلى و . IUG Journal of Educational and Psychology Sciences (Islamic University of Gaza) / CC BY 4.0 :اثانيًا: االتساق الداخلي :ثانيًا: االتساق الداخلي تم التأكد من االتسًًًًًاق الداخلي لم قياس الدافعية للتعلم باسًًًًًتخدام معامل االرتباط بيرسًًًًًون بالتطبيق على عينة اسًًًًًتطالعية ( مكونًة من196 ) تلميًذة، حيًث تم حسًًًًًًًًًًًًًًاب معًامًل االرتبًاط بين درجًة كًلّ عبًارة من عبًارات المقيًاس بًالًدرجًة الكليًة للبُعًد الًذي .تنتمي إليه العبارة، كما توضم ذلك الجداول التالية IUG Journal of Educational and Psychology Sciences (Islamic University of Gaza) / CC BY 4.0 195 جودة الحياة المدرسية وعالقتها بالدافعية للتعلم لدى تالميذ المرحلة االبتدائية في المدارس األهلية والحكومية بالسعودية جودة الحياة المدرسية وعالقتها بالدافعية للتعلم لدى تالميذ المرحلة االبتدائية في المدارس األهلية والحكومية بالسعودية زهراء سليمان ( جدول7 ): معامالت ارتباط بيرسون لعبارات أبعاد مقياس الدافعية للتعلم = بالدرجة الكلية لكلّ بُعد من األبعاد (ن196 ) الدافعية الداخلية الدافعية الخارجية العبارة معامل االرتباط العبارة معامل االرتباط 1 0.792 ** 3 0.851 ** 2 0.683 ** 4 0.825 ** 10 0.774 ** 5 0.764 ** 18 0.717 ** 6 0.711 ** 19 0.682 ** 7 0.755 ** 20 0.661 ** 8 0.845 ** 21 0.727 ** 9 0.861 ** 22 0.691 ** 11 0.875 ** 23 0.728 ** 12 0.845 ** 24 0.658 ** 13 0.746 ** 27 0.640 ** 14 0.742 ** 28 0.730 ** 15 0.679 ** 30 0.702 ** 16 0.750 ** 31 0.714 ** 17 0.748 ** 32 0.717 ** 25 0.684 ** 33 0.656 ** 26 0.815 ** 34 0.699 ** 29 0.822 ** 35 0.822 ** 37 0.574 ** 36 0.861 ** - - ت ن0 01 ( يتضًًًًم من خالل الجدول رقم7 ( ) أنّ جميع العبارات دالة عند مسًًًًتوى0.01 )، حيث تراوحت قيم معامالت االرتباط لبُعد ( الًدافعيًة الًداخليًة مًا بين0.640 ، 0.861 ( )، وللًدافعيًة الخًارجيًة مًا بين0.574 ، 0.875 ،)، وجميعهًا معًامالت ارتبًاط جيًّدة وهذا يعطي داللة على ارتفاق معامالت االتساق الداخلي، كما يشير إلى مؤشّ رات صدق مرتفعة وكافية يمكن الوثوق بها في تطبيق .أداة الدراسة الحالية جدول ( 8 ): معامالت ارتباط بيرسون ألبعاد مقياس الدافعية للتعلم = بالدرجة الكلية لكلّ بُعد من األبعاد (ن196 ) البُعد معامل االرتباط الدافعية الداخلية 0.833 ** الدافعية الخارجية 0.765 ** ** دال عند مستوى0.01 جدول ( 8 ): معامالت ارتباط بيرسون ألبعاد مقياس الدافعية للتعلم = بالدرجة الكلية لكلّ بُعد من األبعاد (ن196 ) البُعد معامل االرتباط الدافعية الداخلية 0.833 ** الدافعية الخارجية 0.765 ** ** دال عند مستوى0.01 ** دال عند مستوى0.01 ( يتضم من خالل الجدول رقم8 ) أنّ جميع( العبارات دالة عند مستوى0.01 )، حيث تراوحت قيم معامالت االرتباط ألبعاد ( مقيًًاس الًًدافعيًًة للتعلم مًًا بين0.765 ، 0.833 )، وجميعهًًا معًًامالت ارتبًًاط جيًًّدة، وهًًذا يعطي داللًًة على ارتفًًاق معًًامالت االتساق الداخلي، كما يشير إلى مؤشرات صدق مرتفعة وكافية يمكن الوثوق بها في ت.طبيق أداة الدراسة الحالية IUG Journal of Educational and Psychology Sciences (Islamic University of Gaza) / CC BY 4.0 196 زهراء سليمان IUG Journal of Educational and Psychology Sciences (Islamic University of Gaza) / CC BY 4.0 :مقترحات البحث ف ي ضًًًًًوء النتائج التي تم التوصًًًًًل إليها تقدّم الباحثة بعض المقترحات لدراسًًًًًات مسًًًًًتقبلية، التي تأمل أن تُسًًًًًاهم في إثراء :المجال التربوي في ذلك الميدان، وذلك على النحو التالي ا ف ي ضًًًًًوء النتائج التي تم التوصًًًًًل إليها تقدّم الباحثة بعض المقترحات لدراسًًًًًات مسًًًًًتقبلية، التي تأمل أن تُسًًًًًاهم في إثراء :المجال التربوي في ذلك الميدان، وذلك على النحو التالي ا 1 . إجراء دراسة مماثلة تتناول جودة الحياة المدرسية وعالقتها بالدافعية للتعلم بمراحل دراسية أخرى اااوبمدن أ 1 . إجراء دراسة مماثلة تتناول جودة الحياة المدرسية وعالقتها بالدافعية للتعلم بمراحل دراسية أخرى.وبمدن أخرى اااأ 2 . إجراء دراسًًًًًًًًًًًًًًة تتنًاول جودة الحيًاة المًدرسًًًًًًًًًًًًًًيًة وعالقتهًا بتقًدير الًذات لًدى تالميًذ المرحلًة االبتًدائيًة في المًدارس األهليًة .والحكومية بمدينة الدمام 3 . إجراء دراسًًًًًًًًًًًًًًة تتنًاول الدافعيًة للتعلم وعالقتًه بتقًدير الذات لدى تالميًذ المرحلًة االبتًدائيًة في المًدارس األهليًة والحكوميًة .بمدينة الدمام 3 . إجراء دراسًًًًًًًًًًًًًًة تتنًاول الدافعيًة للتعلم وعالقتًه بتقًدير الذات لدى تالميًذ المرحلًة االبتًدائيًة في المًدارس األهليًة والحكوميًة .بمدينة الدمام 4 . إجراء دراسًًًة تتناول التوافق األسًًًري وعالقته بالدافعية للتعلم لدى تالميذ المرحلة االبتدائية في المدارس األهلية والحكومية بمدينة.الدمام 4 . إجراء دراسًًًة تتناول التوافق األسًًًري وعالقته بالدافعية للتعلم لدى تالميذ المرحلة االبتدائية في المدارس األهلية والحكومية بمدينة.الدمام 5 . إجراء دراسًًًًًًًة تتناول جودة الحياة المدرسًًًًًًًية وعالقتها بالذكاء االنفعالي لدى تالميذ المرحلة االبتدائية في المدارس األهلية .والحكومية بمدينة الدمام 5 . إجراء دراسًًًًًًًة تتناول جودة الحياة المدرسًًًًًًًية وعالقتها بالذكاء االنفعالي لدى تالميذ المرحلة االبتدائية في المدارس األهلية .والحكومية بمدينة الدمام 5 . إجراء دراسًًًًًًًة تتناول جودة الحياة المدرسًًًًًًًية وعالقتها بالذكاء االنفعالي لدى تالميذ المرحلة االبتدائية في المدارس األهلية .والحكومية بمدينة الدمام :ثالثًا: صدق المقارنة الطرفية متوسط درجات مجموعة اإلرباعي األدنى ، على مقياس الدافعية للتعلم ، وهذا دليل على صدقه وقدرته على التمييز :ثبات مقياس الدافعية للتعلم ( يوضًًم الجدول رقم10 .) أن مقياس الدافعية للتعلم يتمتع بمعامالت ثبات مرتفعة يمكن الوثوق بها في تطبيق أداة الدراسًًة الحالية عرض نتائج البحث وتفسيرها: نتائج البحث المتعلقة بالفرض األول الذي ينصّ على : "توجد عالقة ارتباطية موجبة دالة إحصًًًًًًًًًًًًًائيًّا بين جودة الحياة ا لمدرسًًًًًًًًًًًًًية .")والدافعية للتعلم لدى تلميذات المدارس (الحكومية، واألهلية وللتعرف على طبيعًة العالقًة بين جودة الحيًاة المًدرسًًًًًًًًًًًًًًيًة والًدافعيًة للتعلم لًدى تالميًذ المرحلًة االبتًدائيًة بغرب الًدمًام، تم ( استخدام معامل ارتباط بيرسونPerson Correlation)، وذلك كما يتضم من خالل ال( جدول رقم11 :) G Journal of Educational and Psychology Sciences (Islamic University of Gaza) / CC BY 4.0 197 زهراء سليمان جودة الحياة المدرسية وعالقتها بالدافعية للتعلم لدى تالميذ المرحلة االبتدائية في المدارس األهلية والحكومية بالسعودية ( جدول11 ): نتائج معامل ارتباط بيرسون للعالقة بين جودة الحياة المدرسية والدافعية للتعلم لدى تالميذ المرحلة االبتدائية بغرب الدمام م الدافعية للتعلم جودة الحياة المدرسية معامل االرتباط مستوى الداللة 1 الدافعية الداخلية 0.363 ** 0.001 2 الدافعية الخارجية 0.377 ** 0.001 الدرجة الكلية للدافعية للتعلم 0.553 ** 0.001 ( ** دال عند مستوى0.01 ) ( يتضًًًًم من خالل الجدول رقم11 ( ) أنّ هناك عالقة طردية (إيجابية) ذات داللة إحصًًًًائية عند مسًًًًتوى0.01 ) بين جودة الحياة المدرسًًية والدرجة الكلية للدافعية للتعلم وأبعاده الفرعية المتمثلة في (الدافعية الداخلية، الدافعية الخارجية) لدى تالميذ المرحلة االبتًًدائيًًة بغرب الًًد( مًًام، حيًًث بلغًًت قيمًًة معًًامًًل ارتبًًاط بيرسًًًًًًًًًًًًًًون لألبعًًاد على التوالي0.363 ، 0.377 )، وللًًدرجًًة الكليًًة ( 0.553 )، وتُشًًًير النتيجة السًًًابقة إلى أنّ زيادة مسًًًتوى جودة الحياة المدرسًًًية يُسًًًاهم في زيادة مسًًًتو ة الدافعية للتعلم لدى تالميذ الصفوف العليا بالمرحلة االبتدائية بغرب الدم.ام نتـائج البحـث المتعلقـة بـالفرض الثـاني الـذي ينصّ على ،: "ال توجًد فروق ذات داللًة إحصًًًًًًًًًًًًًًائيًة بين تلميًذات المًدارس (الحكوميًة ."واألهلية) في جودة الحياة المدرسية وللتعرف على إذا ما كانت هناك فروق ذات داللة إحصًًًًًائية في مسًًًًًتوى جودة الحياة لدى تالميذ الصًًًًًفوف العليا بالمرحلة ( االبتدائية بغرب الدمام باختالف متغيّر نوق المدرسًًًًًًة (حكومية، أهلية)، تم اسًًًًًًتخدام اختبار مان ويتنيMann-Whitney ً) بديال ( عن اختبار (ت) لعينتين مسًتقلتينIndependnat SampLe T-Test )؛ وذلك لعدم تكافؤ فئات متغيّر نوق المدرسًة، وذلك كما يتضم من خالل الجدول( رقم12 :) ( جدول12 ): ( نتائج اختبار مان ويتنيMann-Whitney ) للفروق في مستوى جودة الحياة المدرسية لدى تالميذ الصفوف العليا بالمرحلة االبتدائية بغرب الدمام باختالف متغيّر نوع المدرسة نوع المدرسة العدد متوسط الرتب مجموع الرتب قيمةZ مستوى الداللة حكومية 354 190.39 67396.50 1.827 0.068 أهلية 32 227.95 724.50 (ل ق الل ال12 (ائ ة اللة إ اك ف ق ذا لا ) أ0 01ال ا ) ف جودة الحياة المدرسية وعالقتها بالدافعية للتعلم لدى تالميذ المرحلة االبتدائية في المدارس األهلية والحكومية بالسعودية ( جدول11 ): نتائج معامل ارتباط بيرسون للعالقة بين جودة الحياة المدرسية والدافعية للتعلم لدى تالميذ المرحلة االبتدائية بغرب الدمام م الدافعية للتعلم جودة الحياة المدرسية معامل االرتباط مستوى الداللة 1 الدافعية الداخلية 0.363 ** 0.001 2 الدافعية الخارجية 0.377 ** 0.001 الدرجة الكلية للدافعية للتعلم 0.553 ** 0.001 (ت ى ** دال عند0 01 ) ( يتضًًًًم من خالل الجدول رقم11 ( ) أنّ هناك عالقة طردية (إيجابية) ذات داللة إحصًًًًائية عند مسًًًًتوى0.01 ) بين جودة الحياة المدرسًًية والدرجة الكلية للدافعية للتعلم وأبعاده الفرعية المتمثلة في (الدافعية الداخلية، الدافعية الخارجية) لدى تالميذ المرحلة االبتًًدائيًًة بغرب الًًد( مًًام، حيًًث بلغًًت قيمًًة معًًامًًل ارتبًًاط بيرسًًًًًًًًًًًًًًون لألبعًًاد على التوالي0.363 ، 0.377 )، وللًًدرجًًة الكليًًة ( 0.553 )، وتُشًًًير النتيجة السًًًابقة إلى أنّ زيادة مسًًًتوى جودة الحياة المدرسًًًية يُسًًًاهم في زيادة مسًًًتو ة الدافعية للتعلم لدى تالميذ الصفوف العليا بالمرحلة االبتدائية بغرب الدم.ام نتـائج البحـث المتعلقـة بـالفرض الثـاني الـذي ينصّ على ،: "ال توجًد فروق ذات داللًة إحصًًًًًًًًًًًًًًائيًة بين تلميًذات المًدارس (الحكوميًة ."واألهلية) في جودة الحياة المدرسية وللتعرف على إذا ما كانت هناك فروق ذات داللة إحصًًًًًائية في مسًًًًًتوى جودة الحياة لدى تالميذ الصًًًًًفوف العليا بالمرحلة ( االبتدائية بغرب الدمام باختالف متغيّر نوق المدرسًًًًًًة (حكومية، أهلية)، تم اسًًًًًًتخدام اختبار مان ويتنيMann-Whitney ً) بديال ( عن اختبار (ت) لعينتين مسًتقلتينIndependnat SampLe T-Test )؛ وذلك لعدم تكافؤ فئات متغيّر نوق المدرسًة، وذلك كما يتضم من خالل الجدول( رقم12 :) ( يتضًًًًم من خالل الجدول رقم11 ( ) أنّ هناك عالقة طردية (إيجابية) ذات داللة إحصًًًًائية عند مسًًًًتوى0.01 ) بين جودة الحياة المدرسًًية والدرجة الكلية للدافعية للتعلم وأبعاده الفرعية المتمثلة في (الدافعية الداخلية، الدافعية الخارجية) لدى تالميذ المرحلة االبتًًدائيًًة بغرب الًًد( مًًام، حيًًث بلغًًت قيمًًة معًًامًًل ارتبًًاط بيرسًًًًًًًًًًًًًًون لألبعًًاد على التوالي0.363 ، 0.377 )، وللًًدرجًًة الكليًًة ( 0.553 )، وتُشًًًير النتيجة السًًًابقة إلى أنّ زيادة مسًًًتوى جودة الحياة المدرسًًًية يُسًًًاهم في زيادة مسًًًتو ة الدافعية للتعلم لدى تالميذ الصفوف العليا بالمرحلة االبتدائية بغرب الدم.ام وللتعرف على إذا ما كانت هناك فروق ذات داللة إحصًًًًًائية في مسًًًًًتوى جودة الحياة لدى تالميذ الصًًًًًفوف العليا بالمرحلة ( االبتدائية بغرب الدمام باختالف متغيّر نوق المدرسًًًًًًة (حكومية، أهلية)، تم اسًًًًًًتخدام اختبار مان ويتنيMann-Whitney ً) بديال ( عن اختبار (ت) لعينتين مسًتقلتينIndependnat SampLe T-Test )؛ وذلك لعدم تكافؤ فئات متغيّر نوق المدرسًة، وذلك كما يتضم من خالل الجدول( رقم12 :) ( جدول12 ): ( نتائج اختبار مان ويتنيMann-Whitney ) للفروق في مستوى جودة الحياة المدرسية لدى تالميذ الصفوف العليا بالمرحلة االبتدائية بغرب الدمام باختالف متغيّر نوع المدرسة نوع المدرسة العدد متوسط الرتب مجموع الرتب قيمةZ مستوى الداللة حكومية 354 190.39 67396.50 1.827 0.068 أهلية 32 227.95 724.50 ااا ( يتضًًًًًًم من خالل الجدول رقم12 ( ) أنه ال توجد هناك فروق ذات داللة إحصًًًًًًائية عند مسًًًًًًتوى0.01 ) في مسًًًًًًتوى جودة الحياة المدرسية لدى تالميذ الصفوف العليا بالمرحلة االبتدائية بغرب مدينة الدمام باختالف متغّير نوق المدرسة، حيث بلغت قيمة االختبار ( Z ( ) 1.827 ( ) بمتسًًًوى داللة0.068 ( )، وهي قيمة أكبر من0.05 ) أي غير دالة إحصًًًائيًّا، وتُشًًًير النتيجة السًًًابقة إلى تقارب مسًًًًتوى جودة الحياة المدرسًًًًية لدى تالميذ الصًًًًفوف العليا بالمرحلة االبتدائية بغرب مدينة الدمام ب المدارس الحكومية واألهلية، وقد ( اتفقت نتيجة الدراسًًًًة الحالية مع نتيجة دراسًًًًة اليف وتونكAliyev & Tunc, 2015 ) التي توصًًًًلت إلى عدم وجود فروق ذات .داللة إحصائية في جودة الحياة المدرسية باستثناء التواصل بين التالميذ باختالف متغيّر نوق المدرسة نتـائج البحـث المتعلقـة بـالفرض الثـالـث الـذي ينصّ على ،: "ال توجًد فروق ذات داللًة إحصًًًًًًًًًًًًًًائيًة بين تلميًذات المًدارس (الحكوميًة "داف ة الت ل األهل ة) ف وللتعرف على إذا ما كانت هناك فروق ذات داللة إحصًًًًائية في مسًًًًتوى دافعية التعلم لدى تالميذ الصًًًًفوف العليا بالمرحلة االبتدائية بغرب الدمام با( ختالف متغيّر نوق المدرسًًًًًًة (حكومية، أهلية)، تم اسًًًًًًتخدام اختبار مان ويتنيMann-Whitney ً) بديال IUG Journal of Educational and Psychology Sciences (Islamic University of Gaza) / CC BY 4.0 198 المدارس األهلية والحكومية بالسعودية ( عن اختبار (ت) لعينتين مسًتقلتينIndependnat SampLe T-Test )؛ وذلك لعدم تكافؤ فئات متغيّر نوق المدرسًة، وذلك كما ( يتضم من خالل الجدول رقم13 :) (ال ج ول رم م ن ي) ( جدول13 ): ( نتائج اختبار مان ويتنيMann-Whitney) للفروق في مستوى دافعية التعلم لدى تالميذ الصفوف العليا بالمرحلة االبتدائية بغرب الدمام باختالف متغيّر نوع المدرسة األبعاد نوع المدرسة العدد متوسط الرتب مجموع الرتب قيمةZ مستوى الداللة الدافعية الداخلية حكومية 354 193.98 68667.50 0.280 0.780 أهلية 32 188.23 6023.50 الدافعية الخارجية حكومية 354 195.18 69092.00 0.986 0.324 أهلية 32 174.97 5599.00 الدرجة الكلية حكومية 354 193.72 68576.50 0.128 0.898 أهلية 32 191.08 6114.50 ااا يتضًًًًًم من خالل الجدول( رقم13 ( ) أنه ال توجد هناك فروق ذات داللة إحصًًًًًائية عند مسًًًًًتوى0.01 ) في الدرجة الكلية للدافعية للتعلم وأبعًادهًا الفرعيًة المتمثلًة في (الًدافعيًة الًداخليًة، الًدافعيًة الخًارجيًة) لًدى تالميًذ الصًًًًًًًًًًًًًًفوف العليًا بًالمرحلًة االبتًدائيًة بغرب مدينة الدمام باختالف متغيّر نوق المدرسًة( ، حيث بلغت قيمة االختبارZ ( :) لألبعاد على التوالي0.280 ، 0.986 ) وللدرجة الكلية ( 0.128 ( :) بمسًًًًًًًًًًًًًًتوى داللًة لألبعًاد على التوالي0.780 ، 0.324 ( )، وللًدرجًة الكليًة0.898 ( )، وجميعهًا قيم أكبر من0.05 ،) أي غير دالة إحصًًًًًائيًّا، وتُشًًًًًير النتيجة السًًًًًابقة إلى تقارب مسًًًًًتوى الدا فعية للتعلم لدى تالميذ الصًًًًًفوف العليا بالمرحلة االبتدائية .بغرب مدينة الدمام بالمدارس الحكومية واألهلية أ وترى البًاحثًة أنه ربمًا قد ترجع نتيجًة تسًًًًًًًًًًًًًًاوي الدافعيًة للتعلم بين التلميًذات في المًدارس الحكوميًة والتلميًذات في المًدارس األهليًة إلى أن البحًث جرى في وقت جائحًة ك ورونا حيًث تسًًًًًًًًًًًًًًاوت الظروف بالنسًًًًًًًًًًًًًًبًة للتعليم الحكومي واألهلي فجميع التلميًذات .يدرسن عن بعد في منازلهن وأشتقن للعودة للمقاعد الدراسية بعد فترة انقطاق نتائج البحث المتعلقة بالفرض الرابع الذي ينصّ على : "يمكن التنبؤ بالدافعية لتعلم من خالل جودة الحياة المدرسًًًًًًًًية لدى تلميذات "ة األ ل ة ال ك ال ا أ وللتعرف على إذا مًا كًانًت هنًاك إمكًانيًة للتبنؤ بًالًدافعيًة للتعلم من خالل مسًًًًًًًًًًًًًًتوى جودة الحيًاة المًدرسًًًًًًًًًًًًًًيًة لًدى تلميًذات ( الصًًًفوف العليا بالمدارس الحكومية واألهلية بغرب الدمام؛ تم اسًًًتخدام تحليل االنحدار البسًًًيطSimple Regrsion )، وذلك كما ( يتضم من خالل الجدول رقم14 :) ( 14 ): ( تحليل االنحدار البسيطSimple Regression ) لمدى إمكانية التنبؤ بالدافعية للتعلم من خالل مستوى جودة الحياة المدرسية لدى تلميذات الصفوف العليا بالمدارس الحكومية واألهلية بغرب الدمام المتغيّر المستقبل )(جودة الحياة المدرسية )المتغيّر التابع (الدافعية للتعلم قيمةB الخطأ المعياري قيم بيتا قيم ت مستوى المعنوية الثابت 89.237 2.199 40.583 0.001 الدرجة الكلية لجودة الحياة المدرسية 0.071 0.32 0.112 5.209 0.010 = قيمة ف12.878 = مستوى داللتها0.002 = معامل التحديد0.313 199 IUG Journal of Educational and Psychology Sciences (Islamic University of Gaza) / CC BY 4.0 ( يتضًًًم من خالل الجدول رقم14 ) أنه يُمكن القول: إنّ نموذج تحليل االنحدار المتعدّد للعالقة بين جودة الحياة المدرسًًًية " كمتغيّر مسًًًًًًًًًًًًًًتقًل، والًدافعيًة للتعلم كمتغيّر تًابع، يتمتع بمعنويًة إحصًًًًًًًًًًًًًًائيًة مرتفعًة، وذلًك وفق مًا تشًًًًًًًًًًًًًًير إليًه قيمًة اختبًارF " المدارس األهلية والحكومية بالسعودية ( 12.878 ( )، ومستوى داللتها0.002 ( ) وهي أقلّ من مستوى الداللةα= 0.05 ،)مما يعني أنّ النموذج بمتغيّراته المستقلة صالم :للتنبؤ بقيم المتغيّر التابع، ويمكن صياغة معادلة التنبؤ على النحو التالي =الدافعية للتعلم89.237 + 0.112× جودة الحياة المدرسية م ويشًًًًًًًير معامل التحديدR2 ( 0.313) إلى أنّ ج ودة الحياة المدرسًًًًًًًية كمتغيّر مسًًًًًًًتقل مسًًًًًًًؤول عن تفسًًًًًًًير ما يقارب من ( 31.3 ) من التباين في الدافعية للتعلم لدى تلميذات الصًًًًًًًًًًًفوف العليا بالمدارس الحكومية واألهلية بغرب الدمام، وباقي النسًًًًًًًًًًًبة% .تعود لعوامل أخرى ( وبإمعان النظر في القيم اإلحصائية في الجدول رقم11 ّ) نجد أن هناك تأثيرًا واضحًا لجودة الحياة المدرسية على مستوى ( )الدافعية للتعلم لدى تلميذات الصفوف العليا بالمدارس الحكومية واألهلية بغرب الدمام، حيث بلغت قيمة (ت5.209 ) بمستوى ( داللة0.010 )، وتُشير النتيجة السابقة إلى أنّ زيادة أو انخفاض مستوى جودة الحياة المدرسية لدى تلميذات الصفوف العليا بالمدارس الحكومية واألهلية بغرب الدمام يؤثر بدرجة كبيرة على مستوى الدافعية للتعلم لديهم، وقد اتفقت نتيجة الدراسة الحالية مع ( نتيجة دراسة غوستر لوقلوKösterelioglu, 2015) التي توصلت إلى إمكانية تنبؤ جميع متغيّرات جودة الحياة المدرس ية بالدوافع .األكاديمية لدى طالب المدارس الثانوية في مقاطعة أماسيا :في ضوء النتائج التي تم التوصل إليها توصي الباحثة بما يلي - توجيه أنظار التربويين إلى أهمية الدافعية للتعلم، وتعليم الطالب، واعتماده كعنصر من عناصر األهداف.التعليمية - إعادة النظر بتطبيق مفاهيم الدافعية للتعلم في نظامنا التعليمي الحالي بطرق أكثر جدية، حيث تعتبر عملية تحسين الدافعية للتعلم من اإلشكاليات التي أولى علماء النفس اهتمامًا كبيرًا لها خاصة فيما يرتبط بكيفية ضمان وصول أغلبية التالميذ إلى مستويات عالي ة ومتقدمة من التعليم، حيث بلغت هذه الظاهرة حدًّا يستوجب التفكير الجدّي، والتدخل السريع والفعّال بشتّى الوسائل .والطرق البيداغوجية بغرض تقديم حلول مالئمة للحدّ من تأثيرها السيئ على المردود النوعي والكمي لنظامنا التربوي -توعية المعلمين بأهمية الدافعية للتعل مستويات الحصول عل م بغرض توجيه التالميذ واالستفادة من قدراتهم ودافعيتهم ف - توعية المعلمين بأهمية الدافعية للتعل م بغرض توجيه التالميذ واالستفادة من قدراتهم ودافعيتهم في الحصول على مستويات .أعلى من التحصيل - توعية المعلمين بأهمية الدافعية للتعل م بغرض توجيه التالميذ واالستفادة من قدراتهم ودافعيتهم في الحصول على مستويات .أعلى من التحصيل - .إجراء دراسات مستقبلية للمقارنة بين مراحل دراسية أخرى التي من شأنها أن تظهر تأثير الدافعية في مراحل النمو المختلفة • تعزيز مسًًًًتوى جودة الحياة المدرسًًًًية لدى تالميذ ا لصًًًًفوف العليا بالمرحلة االبتدائية بغرب مدينة الدمام، وذلك من خالل االهتمام بالبيئة المدرسًًًًًية والصًًًًًحة المدرسًًًًًية؛ مما ينعكس إيجابيًّا على مسًًًًًتوى الدافعية للتعلم لديهم، حيث بيّنت النتائج .العالقة اإليجابية بين المتغيّرين - .إجراء دراسات مستقبلية للمقارنة بين مراحل دراسية أخرى التي من شأنها أن تظهر تأثير الدافعية في مراحل النمو المختلفة • تعزيز مسًًًًتوى جودة الحياة المدرسًًًًية لدى تالميذ ا لصًًًًفوف العليا بالمرحلة االبتدائية بغرب مدينة الدمام، وذلك من خالل االهتمام بالبيئة المدرسًًًًًية والصًًًًًحة المدرسًًًًًية؛ مما ينعكس إيجابيًّا على مسًًًًًتوى الدافعية للتعلم لديهم، حيث بيّنت النتائج .العالقة اإليجابية بين المتغيّرين إا • االهتمام باألنشًًًطة الطالبية التي تُسًًًاهم في ت عزيز العالقات االجتماعية بين التالميذ، بما يُسًًًاهم في زيادة مسًًًتوى جودة .الحياة المدرسية لديهم • التوعية المسًًًتمرة ألولياء األمور من خالل مجالس اآلباء بأسًًًاليب المعاملة الوالدية التي تُسًًًاهم في تعزيز مسًًًتوى دافعية .التعلم لدى األبناء أ • توفير المناخ التعليمي اإليجابي في المدرسًة وداخل الصًفوف الدراسًية؛ مما يُسًاهم في زيادة مسًتوى جودة الحياة المدرسًية .والدافعية للتعلم لدى التالميذ • توفير المناخ التعليمي اإليجابي في المدرسًة وداخل الصًفوف الدراسًية؛ مما يُسًاهم في زيادة مسًتوى جودة الحياة المدرسًية .والدافعية للتعلم لدى التالميذ • إعداد الدورات التدريبية وورش العمل للمعلمين حول طرق تعزيز مسًًًًًًًًًًًتوى دافعية التعلم لدى تالميذ الصًًًًًًًًًًًفوف العليا من .المرحلة االبتدائية • إعداد الدورات التدريبية وورش العمل للمعلمين حول طرق تعزيز مسًًًًًًًًًًًتوى دافعية التعلم لدى تالميذ الصًًًًًًًًًًًفوف العليا من .المرحلة االبتدائية 200 زهراء سليمان جودة الحياة المدرسية وعالقتها بالدافعية للتعلم لدى تالميذ المرحلة االبتدائية في المدارس األهلية والحكومية بالسعودية :مقترحات البحث المصادر والمراجع :أوالً: المراجع العربية ( .أحمد، عبد الباقي دفع هللا، وفضول، محمد صالح عوض2018 ). دافعية التعلم وعالقتها .بالتوافق الدراسي، الحلقة األخيرة، مرحلة التعليم األساسي بمحليّة شرق النيل بالخرطوم مجلة كلية التربية . 10 ( 11 )ت 153 - 196 . ( .أحمد، عبد الباقي دفع هللا، وفضول، محمد صالح عوض2018 ). دافعية التعلم وعالقتها .بالتوافق الدراسي، الحلقة األخيرة، مرحلة التعليم األساسي بمحليّة شرق النيل بالخرطوم مجلة كلية التربية . 10 ( 11 )ت 153 - 196 . ( .األسود، الزهرة علي2017 ). جودة الحياة كمنبئ للدافعية للتعلم لدى عينة من طلبة جامعة الوادي . المجلة التربوية الدولية المتخصصة ). 6 ( 12 )ت87 - 95 . ( .أمزيان، محمد2020). اتجاهات اآلباء نحو جودة الحياة المدرسية وعالقتها بالتحصيل .الدراسي لألبناء.مجلة الطفولة العربية 21 ( 82 )ت11 - 31 . ا ( .األسود، الزهرة علي2017 ). جودة الحياة كمنبئ للدافعية للتعلم لدى عينة من طلبة جامعة الوادي . المجلة التربوية الدولية المتخصصة ). 6 ( 12 )ت87 - 95 . ( .أمزيان، محمد2020 ). اتجاهات اآلباء نحو جودة الحياة المدرسية وعالقتها بالتحصيل .الدراسي لألبناء.مجلة الطفولة العربية 21 ( 82 )ت11 - 31 . البار، نورة، وسقايت ياسمين، ونعم( .ي، أسماء2019 .) دور الخدمات االجتماعية المدرسية في تعزيز الدافعية للتعلم لدى تالميذ التعليم االبتدائي من وجهة نظر المعلمين).( رسالة دكتوراة . جامعة محمد .بوضياف بالمسيلة، كلية العلوم اإلنسانية واالجتماعية، الجزائر توقت ( .محيي الدين وعدست عبد الرحمن وقطامي، يوسف2003 ). أسس علم النفس التربوي . (ط3 .). األردن. عمان: دار الفكر للنشر والتوزيع ( .حليم، شيري مسعد2015). الدافعية األكاديمية وعالقتها باالندماج المدرسي لدى تالميذ .المرحلة اإلعدادية مجلة دراسات عربية ، 14 ( 1)ت 89 - 162 . ا البار، نورة، وسقايت ياسمين، ونعم( .ي، أسماء2019 .) دور الخدمات االجتماعية المدرسية في تعزيز الدافعية للتعلم لدى تالميذ التعليم االبتدائي من وجهة نظر المعلمين).( رسالة دكتوراة . جامعة محمد .بوضياف بالمسيلة، كلية العلوم اإلنسانية واالجتماعية، الجزائر توقت ( .محيي الدين وعدست عبد الرحمن وقطامي، يوسف2003 ). أسس علم النفس التربوي . (ط3 .). األردن. عمان: دار الفكر للنشر والتوزيع ( .حليم، شيري مسعد2015). الدافعية األكاديمية وعالقتها باالندماج المدرسي لدى تالميذ .المرحلة اإلعدادية مجلة دراسات عربية ، 14 ( 1)ت 89 - 162 . إ ( .الرايقي، وئام بنت حامد2018 ). العوامل المدرسية المؤدية النخفاض الدافعية للتعلم من .وجهة نظر الطالبات: دراسة ميدانية على عينة من طالبات المرحلة الثانوية بمدينة جدة مجلة الدولية للعلوم التربوية والنفسية( . 11)ت401 – 48 . IUG Journal of Educational and Psychology Sciences (Islamic University of Gaza) / CC BY 4.0 المصادر والمراجع ( .الصرايرة، شادي عوض2015 .) دافعية التعلم األكاديمي وعالقتها بالتحصيل لدى الطلبة ذوي صعوبات التعلم .( رسالة ماجستير) .. جامعة مؤتة، مؤتة، األردن ( .الصرايرة، شادي عوض2015 .) دافعية التعلم األكاديمي وعالقتها بالتحصيل لدى الطلبة ذوي صعوبات التعلم .( رسالة ماجستير) .. جامعة مؤتة، مؤتة، األردن IUG Journal of Educational and Psychology Sciences (Islamic University of Gaza) / CC BY 4.0 201 زهراء سليمان جودة الحياة المدرسية وعالقتها بالدافعية للتعلم لدى تالميذ المرحلة االبتدائية في المدارس األهلية والحكومية بالسعودية ( .العسّ اف، ماجد حمدان ماجد2008 .) مدركات الطلبة لبيئة التعلم اآلمنة وعالقتها بتفاعلهم االجتماعي ودافعيتهم للتعلم(. )رسالة دكتورة. .جامعة عمان العربية، عمان، األردن ( .العصيمي، نواف محمد مبارك2014 .)جودة الحياة المدرسية كما يدركها تالميذ المرحلة االبتدائية بالطائف وعالقتها بتقدير الذات والتوافق الشخصي واالجتماعي ،.( رسالة ماجستير). جامعة الطائف .السعودية الكناني، كيالن( .ي عبد الرحمن محمد2015 ). العالقة بين جودة الحياة المدرسية والتحصيل .الدراسي لدى طالب المرحلة الثانوية مجلة اإلرشاد النفسي( . 41 )ت571 - 594 . ( لكحل، سالمة2017 ( .المناخ المدرسي وعالقته بالدافعية للتعلم لدى عينة من تالميذ السنة الرابعة متوسط دراسة ميدانية ب متوسطات دائرة سيدي عامر. ،( رسالة دكتوراة). كلية العلوم اإلنسانية واالجتماعية .جامعة محمد بوضياف، المسيلة، الجزائر ( .الهازمي، فاطمة عبد هللا2017 ). دافعية الطالب للتعلم في إحدى المدارس السعودية في .المملكة المتحدة مجلة رابطة التربويين العرب( . 91 )ت531 - 548 . المدارس األهلية والحكومية بالسعودية ( .العسّ اف، ماجد حمدان ماجد2008 .) مدركات الطلبة لبيئة التعلم اآلمنة وعالقتها بتفاعلهم االجتماعي ودافعيتهم للتعلم(. )رسالة دكتورة. .جامعة عمان العربية، عمان، األردن ( .العصيمي، نواف محمد مبارك2014 .)جودة الحياة المدرسية كما يدركها تالميذ المرحلة االبتدائية بالطائف وعالقتها بتقدير الذات والتوافق الشخصي واالجتماعي ،.( رسالة ماجستير). جامعة الطائف .السعودية الكناني، كيالن( .ي عبد الرحمن محمد2015 ). العالقة بين جودة الحياة المدرسية والتحصيل .الدراسي لدى طالب المرحلة الثانوية مجلة اإلرشاد النفسي( . 41 )ت571 - 594 . ( لكحل، سالمة2017 ( .المناخ المدرسي وعالقته بالدافعية للتعلم لدى عينة من تالميذ السنة الرابعة متوسط دراسة ميدانية ب متوسطات دائرة سيدي عامر. ،( رسالة دكتوراة). كلية العلوم اإلنسانية واالجتماعية .جامعة محمد بوضياف، المسيلة، الجزائر IUG Journal of Educational and Psychology Sciences (Islamic University of Gaza) / CC BY 4.0 :ثانياً: المراجع األجنبية :ثانياً: المراجع األجنبية :ثانياً: المراجع األجنبية Ahmed, A. & Faddoul, M. (2018). Learning Motivation and its Relationship with Academic Adjustment, Last Round, Basic Education Level in East Nile District, Khartoum.(in Arabic)Journal of faculty of Education, 10(11), 153-196. Ahmed, A. & Faddoul, M. (2018). Learning Motivation and its Relationship with Academic Adjustment, Last Round, Basic Education Level in East Nile District, Khartoum.(in Arabic)Journal of faculty of Education, 10(11), 153-196. Al-Assaf, M. (2008). Students' perceptions of a safe learning environment and its relationship with social interaction and learning motivation. (in Arabic) (Doctoral Dissertation). Amman Arab University, Amman, Jordan. Al-Assaf, M. (2008). Students' perceptions of a safe learning environment and its relationship with social interaction and learning motivation. (in Arabic) (Doctoral Dissertation). Amman Arab University, Amman, Jordan. y Al-Aswad, A. (2017). Quality of life as a predictor of learning motivation in a sample of students in Valley University(in Arabic). Specialized International Educational Journal, 6(12), 87-95. Al-Bar, N., Saqai, Y. & Naemi, A. (2019). Role of school social services in promoting learning motivation among elementary school pupils from the teachers' perspectives(in Arabic). (Doctoral Dissertation). Mohamed Boudiaf University in M'sila, Faculty of Humanities and Social Sciences, Algeria. Al-Hazmi, F. (2017). Students' learning motivation in a Saudi school in United Kingdom. (in Arabic) Arab Educators Association Journal, (91), 531-548. Aliyev, R., & Tuns, E. (2015). The investigation of primary school students’ perception of quality of school life and sense of belonging by different variables. Revista De Cercetare Şi Intervenţie Socială, 48(48), 164-182. Al-Kinani, K. (2015). Relationship between Quality of School Life and academic achievement among secondary school students. (in Arabic) Psychological Counseling Journal, (41), 571- 594. Al-Osaimi, N. (2014). Quality of school life perceived by elementary school pupils in Taif and its relationship with self-esteem and personal and social adjustment. (in Arabic) (Master Dissertation). Taif University, Saudi Arabia. Al-Rayqi, W. (2018). School factors that lead to low learning motivation from female students’ perspectives: A field study on a sample of secondary school students in Jeddah(in Arabic). International Journal of Educational and Psychological Sciences, (11), 401–48. 202 أجودة الحياة المدرسية وعالقتها بالدافعية للتعلم لدى تالميذ المرحلة االبتدائية في أجودة الحياة المدرسية وعالقتها بالدافعية للتعلم لدى تالميذ المرحلة االبتدائية في زهراء سليمان Al-Sarayrah, S. (2015). Academic learning motivation and its relationship with academic achievement among students with learning disabilities(in Arabic). (Master Dissertation). Mutah University, Mutah, Jordan. y Amzian, M. (2020). :ثانياً: المراجع األجنبية Parents' attitudes towards school quality of life and its relationship with academic achievement for children(in Arabic). Arab Childhood Magazine, 21(82), 11-31. Bilasa,P, F. Eres,F. (2016). Middle School Students’ Perceptions of the Quality of School Life in Ankara. Journal of Educatio Bilasa,P, F. Eres,F. (2016). Middle School Students’ Perceptions of the Quality of School Life in Ankara. Journal of Education and Learning,10. Bilasa,P, F. Eres,F. (2016). Middle School Students Perceptions of the Quality of School Life in Ankara. Journal of Education and Learning,10. Bullock, Naomi J.(2017).Factors affecting students motivation & achievement in science in selected middle school grade classes. Unpublisheddoctorate dissertation. Clark Atlanta University. Georgia, USA. achievement in science in selected middle school grade classes. Unpublisheddoctorate dissertation. Clark Atlanta University. Georgia, USA. y g Buterin Mičić, M. (2019). Quality of school life in primary school: Students’ perception. Pedagogika, 134(2), 135-150 doi:10.15823/p.2019.134.9. Cetin, S. K. (2018). An analysis on the qualities of school life and classroom engagement levels of students. South African Journal of Education, 13. Cetin, S. K. (2018). An analysis on the qualities of school life and classroom engagement levels of students. South African Journal of Education, 13. Chowdhury,Mohammed S.,& Shahabuddin, A.,M.(2007). Self efficacy,Motivation & their relationship to academic performance of Bangladeshcollege students. Seneca College of Quarterly.Winter. Applied arts & technology in Toronto, Ca. Chowdhury,Mohammed S.,& Shahabuddin, A.,M.(2007). Self efficacy,Motivation & their relationship to academic performance of Bangladeshcollege students. Seneca College of Quarterly.Winter. Applied arts & technology in Toronto, Ca. Ferreira, M., Cardoso, A. P., & Abrantes, J. L. (2011). Motivation Ferreira, M., Cardoso, A. P., & Abrantes, J. L. (2011). Motivation and relationship of the student with the school as factors involved in the perceived learning. Procedia-Social and Behavioral Sciences, 29, 1707-1714. Gherasim, L. R., Butnaru, S., & Iacob, L. (2011). The Motivation, Learning Environment and School Achievement. International Journal of Learning, 17(12), 1-15. Gherasim, L. R., Butnaru, S., & Iacob, L. (2011). The Motivation, Learning Environment and School Achievement. International Journal of Learning, 17(12), 1-15. Ghotra, S., McIsaac, J. D., Kirk, S. F. L., & Kuhle, S. (2016). Validation of the "quality of life in school" instrument in canadian elementary school students. Peerj, 4, e1567-e1567. doi:10.7717/peerj.1567 Validation of the "quality of life in school" instrument in canadian elementary school students. Peerj, 4, e1567-e1567. doi:10.7717/peerj.1567 Gökler, U. G. (2015). The Effect of Quality of School Life on Sense of Happiness: A Study on University Studen r, U. G. (2015). :ثانياً: المراجع األجنبية The Effect of Quality of School Life on Sense of Happiness: A Study on University Students. Academic Journals, 10 Halim, S. (2015). Academic motivation and its relationship with school inclusion among middle school students(in Arabic). Journal of Arab Studies, 14(1), 89-162. Henning, M., Krageloh, C., Hawken, S., Zhao, Y., & Doherty, I. (2010). Quality of life and motivation to learn: A study of medical students. Issues in Educational Research, 20(3), 244-256. (2010). Quality of life and motivation to learn: A study of medical students. Issues in Educational Research, 20(3), 244-256. ( ) Heish, T. (2014). Motivation matters? the relationship among different types of learning motivation, engagement behaviors and learning outcomes of undergraduate students in taiwan. Higher Education, 68(3), 417-433. doi:10.1007/s10734-014-9720-6 Inal, U., & Sadik, F. (2014). Yatili ilkögretim bölge okullarinin okul yasa kalitesine iliskin ögretmen ve ögrenci Görüsleri/The viewsof teachers and students relating to elementary boarding district schools' quality of school life. Çukurova University. Faculty of Education Journal, 43(2), 169. Kösterelioglu, M. A. (2015). Effects of High School Students' Perceptions of School Life Q li h i A d i i i l d i j l 10 Inal, U., & Sadik, F. (2014). Yatili ilkögretim bölge okullarinin okul yasa kalitesine iliskin ögretmen ve ögrenci Görüsleri/The viewsof teachers and students relating to elementary boarding district schools' quality of school life. Çukurova University. Faculty of Education Journal, 43(2), 169. Kösterelioglu, M. A. (2015). Effects of High School Students' Perceptions of School Life 203 IUG Journal of Educational and Psychology Sciences (Islamic University of Gaza) / CC BY 4.0 Quality on Their Academic Motivation Levels. academic journals, 10. Lakhal, S. (2017). School climate and its relationship with learning motivation among a sample of middle fourth-year students: A field study in centers of Sidi Amer district. (in Arabic) (Doctoral Dissertation). Faculty of Humanities and Social Sciences, of Mohamed Boudiaf University, M'Sila, Algeria. Lee, J. C. K., Zhang, Z., & Song, H. (2011). Effects of quality of Quality on Their Academic Motivation Levels. academic journals, 10. Lakhal, S. (2017). School climate and its relationship with learning motivation among a sample of middle fourth-year students: A field study in centers of Sidi Amer district. (in Arabic) (Doctoral Dissertation). Faculty of Humanities and Social Sciences, of Mohamed Boudiaf University, M'Sila, Algeria. Lee, J. C. K., Zhang, Z., & Song, H. (2011). 3 IUG Journal of Educational and Psychology Sciences (Islamic University of Gaza) / school life and classroom environment on student engagement: A Chinese study. Educational Practice and Theory, 33(1), 5-27. Melnic, A., & Botez, N. (2014). Academic learning motivation. Economy Transdisciplinarity Cognition, 17(2), 56. Tawq, M., Adas, A. & Qatami, Y. (2003). Foundations of educational psychology(in Arabic). (3rd Edition), Jordan, Amman: Dar Al-Fikr for Publishing and Distribution. y Melnic, A., & Botez, N. (2014). Academic learning motivation. Economy Transdisciplinarity Cognition, 17(2), 56. Tawq, M., Adas, A. & Qatami, Y. (2003). Foundations of educational psychology(in Arabic). (3rd Edition), Jordan, Amman: Dar Al-Fikr for Publishing and Distribution. :ثانياً: المراجع األجنبية Effects of quality of IUG Journal of Educational and Psychology Sciences (Islamic University of Gaza) / CC BY 4.0 جودة الحياة المدرسية وعالقتها بالدافعية للتعلم لدى تالميذ المرحلة االبتدائية في المدارس األهلية والحكومية بالسعودية زهراء سليمان g , ( ), Tawq, M., Adas, A. & Qatami, Y. (2003). Foundations of educational psychology(in Arabic). (3rd Edition), Jordan, Amman: Dar Al-Fikr for Publishing and Distribution. Tawq, M., Adas, A. & Qatami, Y. (2003). Foundations of educational psychology(in Arabic). (3rd Edition), Jordan, Amman: Dar Al-Fikr for Publishing and Distribution. Tawq, M., Adas, A. & Qatami, Y. (2003). Foundations of educational psychology(in Arabic). (3rd Edition), Jordan, Amman: Dar Al-Fikr for Publishing and Distribution. 204 IUG Journal of Educational and Psychology Sciences (Islamic University of Gaza) / CC BY 4.0
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Review 1: "A single-nucleus and spatial transcriptomic atlas of the COVID-19 liver reveals topological, functional, and regenerative organ disruption in patients"
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Rapid Reviews Infectious Diseases Review 1: "A single-nucleus and spatial transcriptomic atlas of the COVID-19 liver reveals topological, functional, and regenerative organ disruption in patients" Xinjun Wang1 1Memorial Sloan Kettering Cancer Center Department of Epidemiology and Biostatistics UNITED STATES The MIT Press Published on: Dec 09, 2022 URL: https://rrid.mitpress.mit.edu/pub/78y6i305 License: Creative Commons Attribution 4.0 International License (CC-BY 4.0) Rapid Reviews Infectious Diseases Rapid Reviews Infectious Diseases Review 1: "A single-nucleus and spatial transcriptomic atlas of the COVID-19 liver reveals topological, functional, and regenerative organ disruption in patients" Rapid Reviews Infectious Diseases Review 1: "A single-nucleus and spatial transcriptomic atlas of the COVID-19 liver reveals topological, functional, and regenerative organ disruption in patients Rapid Reviews Infectious Diseases Review 1: "A single-nucleus and spatial transcriptomic atlas of the COVID-19 liver reveals topological, functional, and regenerative organ disruption in patients Rapid Reviews Infectious Diseases Review 1: "A single-nucleus and spatial transcriptomic atlas of the COVID-19 liver reveals topological, functional, and regenerative organ disruption in patients Review 1: "A single-nucleus and spatial transcriptomic atlas of the COVID-19 liver reveals topological, functional, and regenerative organ disruption in patients Rapid Reviews Infectious Diseases RR:C19 Evidence Scale rating by reviewer: Reliable. The main study claims are generally justified by its methods and data. The results and conclusions are likely to be similar to the hypothetical ideal study. There are some minor caveats or limitations, but they would/do not change the major claims of the study. The study provides sufficient strength of evidence on its own that its main claims should be considered actionable, with some room for future revision. Reliable. The main study claims are generally justified by its methods and data. The results and conclusions are likely to be similar to the hypothetical ideal study. There are some minor caveats or limitations, but they would/do not change the major claims of the study. The study provides sufficient strength of evidence on its own that its main claims should be considered actionable, with some room for future revision. *************************************** *************************************** Review: In general, this paper studies the changes in the cellular composition and expression states in COVID-19- infected liver cells by analyzing snRNA-seq and spatial transcriptomic data from the livers of COVID-19 decedents in comparison to healthy controls. The analyses are quite thorough and provide novel insights into liver function changes in COVID-19. The omics data from those patients, if publicly available, will be great resources to the field. The major limitation of the study, as discussed in the paper as well, is the relatively small sample size (17 patients), where the patient heterogeneity (e.g. age) may confound the analysis. Also, since all patients have a severe COVID-19 phenotype, the conclusion cannot be generalized to other phenotypes. Nevertheless, the paper is overall well-written and good for publication with minor revision. Below are my comments regarding computational analysis: 1. For doublet detection, the authors applied Scrublet. However, since samples are from different donors, it is more reasonable to use Demuxlet (Kang, et al., 2018) to detect doublets via genetic variation, which is considered an approximate ground truth. I suggest the authors apply Demuxlet to remove doublets (replacing l b f ll i h d f d) d if h h i h l i 1. For doublet detection, the authors applied Scrublet. However, since samples are from different donors, it is more reasonable to use Demuxlet (Kang, et al., 2018) to detect doublets via genetic variation, which is considered an approximate ground truth. I suggest the authors apply Demuxlet to remove doublets (replacing l b f ll i h d f d) d if h h i h l i 2. Batch effect correction and clustering are important steps that may have a big impact on downstream analyses. The authors used Harmony to remove the batch effect before clustering, which is well-known for its computational efficiency. Still, I am a little bit concerned about the choice of Harmony on downstream analyses. That being said, I suggest the authors try some other methods for batch effect correction before clustering (e.g. scVI, Seurat) to check the robustness of the results. 2
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Bites by Non-Native Reptiles in France: Species, Circumstances and Outcome
Toxins
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To cite this version: Gaël Le Roux, Guillaume Grenet, Corinne Schmitt, Sébastien Larréché, Alexis Descatha. Bites by Non-Native Reptiles in France: Species, Circumstances and Outcome. Toxins, 2022, 14 (8), pp.570. ￿10.3390/toxins14080570￿. ￿hal-03788850￿ Distributed under a Creative Commons Attribution 4.0 International License Gaël Le Roux 1,2,*, Guillaume Grenet 3,4 , Corinne Schmitt 5 , French Poison Control Centers Research Group †, Sébastien Larréché 6,7 and Alexis Descatha 1,2 1 ‘Grand Ouest’ Poison Control Center, University Hospital of Angers, CEDEX 9, 49933 Angers, France Grand Ouest Poison Control Center, University Hospital of Angers, CEDEX 9, 49933 Angers, France 2 Institut de Recherche en Santé, Environnement, Travail (IRSET, INSERM UMR_S 1085, ESTER Team), CEDEX 1, 49045 Angers, France y p g g 2 Institut de Recherche en Santé, Environnement, Travail (IRSET, INSERM UMR_S 1085, ESTER Team), CEDEX 1, 49045 Angers, France g 3 Lyon Poison Control Center, HCL, 69003 Lyon, France 4 Laboratory of Biometry and Evolutionary Biology UMR 5558, CNRS, University of Lyon 1, CEDEX, 69622 Villeurbanne, France ‘Sud’ Poison Control Center, APHM, 13005 Marseille, Fran 6 Departement of Medical Biology, Bégin Military Teaching Hospital, 94160 Saint-Mandé, France 7 INSERM UMR-S1144, University of Paris Cité, 75006 Paris, France * Correspondence: galeroux@chu-angers.fr; Tel.: +33-2-41-35-53-54 † French Poison Control Centers Research Group: Ramy Azzouz, Patrick Nisse (Lille Poison Control Center, France), Nathalie Paret, Cécile Chevalier (Lyon Poison Control Center, France), Camille Paradis, Ingrid Blanc, Audrey Nardon (Bordeaux Poison Control Center, France), Luc de Haro, Nicolas Simon (‘Sud’ Poison Control Center, France), Nicolas Delcourt, Florent Battefort (Toulouse Poison Control Center, France), Christine Tournoud, Emmanuel Puskarczyk (‘Est’ Poison Control Center, France), Hervé Laborde, Jérôme Langrand, Weniko Caré, Dominique Vodovar (Paris Poison Control Center, France), Jérémy Lecot, Marion Legeay, Marie Deguigne (‘Grand Ouest’ Poison Control Center, France). Abstract: We aimed to make an exhaustive assessment of circumstances of bites by exotic reptiles bred in France. A retrospective observational study was conducted in all the reported cases from 2000 to 2020 in French poison control centers (PCCs). Two hundred and eighteen cases of bites were recorded. The sex ratio (M/F) of the patients was 1.79 and the mean age of the patients was 29.0 ± 15.8 years. Twenty-two cases (10.1%) occurred during the deep night. One hundred and eighty-six bites (85.7%) occurred in a private context; however, there were more cases of high severity when it occurred in a professional setting (60.0% vs. 11.2%, p < 0.01). The feeding/nursing activity accounted for 54.7% cases. Forty-three species of snake were identified; 28 were considered venomous. There were no deaths among the patients in the study. Most of the cases (85.8%) were of mild severity. All of the patients bitten by a venomous reptile were hospitalized: 10 patients received an antivenom; and 2 required surgery. Citation: Le Roux, G.; Grenet, G.; Schmitt, C.; French Poison Control Centers Research Group; Larréché, S.; Descatha, A. Bites by Non-Native Reptiles in France: Species, Circumstances and Outcome. Toxins 2022, 14, 570. https://doi.org/ 10.3390/toxins14080570 Received: 3 August 2022 Accepted: 19 August 2022 Published: 20 August 2022 Citation: Le Roux, G.; Grenet, G.; Schmitt, C.; French Poison Control Centers Research Group; Larréché, S.; Descatha, A. Bites by Non-Native Reptiles in France: Species, Circumstances and Outcome. Toxins 2022, 14, 570. https://doi.org/ 10.3390/toxins14080570 Received: 3 August 2022 Accepted: 19 August 2022 Published: 20 August 2022 Keywords: exotic reptile; snakebite; poison control center; antivenom Publisher’s Note: MDPI stays neutral with regard to jurisdictional claims in published maps and institutional affil- iations. Key Contribution: Many exotic reptiles held in captivity can cause severe bites, which may require the use of antivenom. However, a small number of popular species are frequently found in mild bites. Copyright: © 2022 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https:// creativecommons.org/licenses/by/ 4.0/). Gaël Le Roux 1,2,*, Guillaume Grenet 3,4 , Corinne Schmitt 5 , French Poison Control Centers Research Group †, Sébastien Larréché 6,7 and Alexis Descatha 1,2 Bites occurred at home and by a small number of popular non-venomous reptile species (pythons and boas, colubrids). These occurred mainly when handling the animals. The rare envenomations were mainly by Asian and American crotalids, followed by elapids. One-third of them were treated with antivenom when available. toxins toxins Citation: Le Roux, G.; Grenet, G.; Schmitt, C.; French Poison Control Centers Research Group; Larréché, S.; Descatha, A. Bites by Non-Native Reptiles in France: Species, Circumstances and Outcome. Toxins 2022, 14, 570. https://doi.org/ 10.3390/toxins14080570 HAL Id: hal-03788850 https://hal.science/hal-03788850v1 Submitted on 27 Sep 2022 L’archive ouverte pluridisciplinaire HAL, est destinée au dépôt et à la diffusion de documents scientifiques de niveau recherche, publiés ou non, émanant des établissements d’enseignement et de recherche français ou étrangers, des laboratoires publics ou privés. HAL is a multi-disciplinary open access archive for the deposit and dissemination of sci- entific research documents, whether they are pub- lished or not. The documents may come from teaching and research institutions in France or abroad, or from public or private research centers. Distributed under a Creative Commons Attribution 4.0 International License toxins toxins Article Bites by Non-Native Reptiles in France: Species, Circumstances and Outcome Gaël Le Roux 1,2,*, Guillaume Grenet 3,4 , Corinne Schmitt 5 , French Poison Control Centers Research Group †, Sébastien Larréché 6,7 and Alexis Descatha 1,2 2. Results A tota eached a m A total of 218 cases of bites by non-native reptiles were recorded in France between 1 January 2000 and 31 December 2020. This represented 10.4 cases per year; however, the number of cases reached a maximum of 18 in 2016 (Figure 1). This represented an incidence of 3.8 per one thousand cases involving an animal (min. 0.5; max. 6.9) or 5.9/100,000 cases managed yearly by the PCCs (min. 0.9; max. 9.2). The bites were reported in all French regions, as described in Figure 2. A total of 218 cases of bites by non native reptiles were recorded in France 1 January 2000 and 31 December 2020. This represented 10.4 cases per year; how number of cases reached a maximum of 18 in 2016 (Figure 1). This represente dence of 3.8 per one thousand cases involving an animal (min. 0.5; max. 6.9) or 5 cases managed yearly by the PCCs (min. 0.9; max. 9.2). The bites were repor French regions, as described in Figure 2. ( g ) p ne thousand cases involving an animal (min. 0.5; max. 6.9) or 5.9/100,000 early by the PCCs (min. 0.9; max. 9.2). The bites were reported in all described in Figure 2. of 3.8 per one thousand cases involving an animal (min. 0.5; max. 6.9) or 5.9/100,000 case managed yearly by the PCCs (min. 0.9; max. 9.2). The bites were reported in all Frenc regions, as described in Figure 2. p g cases managed yearly by the PCCs (min. 0.9; max. 9.2). The bites were rep French regions, as described in Figure 2. Figure 1. Number of annual cases of bites by an exotic reptile. Figure 2. Number and incidence of non-native reptile bites in metropolitan France. O French regions with the number of inhabitants; the variation in color corresponds to th On the right, the number of cases (and incidence/100,000 inhabitants) for each region; 0 2 4 6 8 10 12 14 16 18 20 2000 2001 2002 2003 2004 2005 2006 2007 2008 2009 2010 2011 2012 2013 2014 2015 2016 2017 2018 2019 2020 Number of bites Figure 1. Number of annual cases of bites by an exotic reptile. Figure 1. Number of annual cases of bites by an exotic reptile. Figure 2. Number and incidence of non-native reptile bites in metropolitan France. 1. Introduction Ophidian envenomations are uncommon but potentially serious in Western Europe. They affect 0.4 to 1.1 people per 100,000 inhabitants per year and cause approximately 4 deaths each year [1]. Vipera sensu strictu is the genus most associated with venomous snakebites. The most common species are: V. berus, which is also the species with the widest distribution in Europe; followed by V. ammodytes, V. aspis, V. latastei, V. ursinii, and V. seoanei [2]. https://www.mdpi.com/journal/toxins Toxins 2022, 14, 570. https://doi.org/10.3390/toxins14080570 Toxins 2022, 14, 570 vate bre i f 2 of 11 Alongside these native species, many exotic reptiles are kept in professional or private breeding facilities. A recent study estimated that there are approximately 1250 species of snakes in international trade [3], including venomous animals. g y pp y cies of snakes in international trade [3], including venomous animals. The main objective of this study was to describe frequency of bites by exot in France in terms of the species involved and management s of the species involved and management. g The main objective of this study was to describe frequency of bites by exotic reptiles in France, in terms of the species involved and management. in France, in terms of the species involved and management. 2 Re ult 8 cases of bites by non-native reptiles were recorded in France between d 31 D b 2020 Thi t d 10 4 h th 2.2. Circumstances of the Exposure 2.2. Circumstances of the Exposure The number of reported bite cases per year has increased over the whole period. The time of the bites is described in Table 1 alongside the context (private or occupational). The cases of occupational bites involved the following situations: one involved a professional breeder; and another, a vet who was nursing a Bitis nasicornis at home. Seven cases occurred in pet shops, two in a breeding farm, and ten in a vivarium; all of these involved professionals selling or breeding reptiles. Finally, four cases occurred in the public during handling in a commercial context (fair, circus, photography studio, street show). The context was unknown in seven cases. Only six patients admitted alcohol consumption at the time of the bite. One case of a bite by a venomous animal occurred in a patient who was drunk and high on drugs. The current activity at the time of the bite was known in seventy-five cases (34.4%), as reported in Table 1. 2. Results A tota eached a m On the left, the French regions with the number of inhabitants; the variation in color corresponds to the population. On the right, the number of cases (and incidence/100,000 inhabitants) for each region; the variation in color corresponds to the incidence. 2 1 S i d hi 0 2 4 6 8 10 12 14 16 18 20 2000 2001 2002 2003 2004 2005 2006 2007 2008 2009 2010 2011 2012 2013 2014 2015 2016 2017 2018 2019 2020 Number of bites Figure 2. Number and incidence of non-native reptile bites in metropolitan France. On the left, th French regions with the number of inhabitants; the variation in color corresponds to the populatio On the right, the number of cases (and incidence/100,000 inhabitants) for each region; the variatio in color corresponds to the incidence. Figure 1. Number of annual cases of bites by an exotic reptile. 0 2 4 6 8 10 12 14 16 18 20 2000 2001 2002 2003 2004 2005 2006 2007 2008 2009 2010 2011 2012 2013 2014 2015 2016 2017 2018 2019 2020 Number of bites Figure 1. Number of annual cases of bites by an exotic reptile. of annual cases of bites by an exotic reptile. 003 2004 2005 2006 2007 2008 2009 2010 2011 2012 2013 2014 2015 2016 2017 2018 2019 2020 Figure 1. Number of annual cases of bites by an exotic r Figure 1. Number of annual cases of bites by an exotic reptile. Figure 2. Number and incidence of non-native reptile bites in metropolitan France. On t French regions with the number of inhabitants; the variation in color corresponds to the p nd incidence of non-native reptile bites in metropolitan France. On the left, the the number of inhabitants; the variation in color corresponds to the population. mber of cases (and incidence/100,000 inhabitants) for each region; the variation to the incidence. Figure 2. Number and incidence of non-native reptile bites in metropolitan France. On the left, the French regions with the number of inhabitants; the variation in color corresponds to the population. On the right, the number of cases (and incidence/100,000 inhabitants) for each region; the variation in color corresponds to the incidence. Toxins 2022, 14, 570 3 of 11 2.1. Sociodemographics 2.1. Sociodemographics One hundred and forty (64.2%) of them were male, compared with 78 (35.8%) females. The mean age of the patients was 29.0 ± 15.8 years (ranging from 4 months to 67 years). For seven patients, the age was unknown. Sixteen (7.3%) were younger than 6 years; 15 (6.9%) were aged 6–12 years; 19 (8.7%) were aged 13–18 years; and 161 (73.9%) were older than 18 years. The mean age of the patients bitten by a venomous species was higher than those bitten by a reputedly non-venomous species (39.5 ± 16.6 years vs. 26.7 ± 13.7 years, p < 0.001) (Table 1). Table 1. Distribution of exotic reptile bites. Variable Total PSS * 0/1 PSS * 2/3 p Age (y.o.) 211 27.5 ± 15.8 37.8 ± 13.3 <0.001 Sex 0.039 Male 140 115 25 Female 78 72 6 Venomous animal <0.001 Yes 42 18 24 No 168 161 7 Time of bite N.S. Day 120 101 19 Evening 72 62 10 Deep night 23 21 2 Activity N.S. Feeding, nursing 41 31 10 Handling 34 31 3 Context <0.01 Private 187 166 21 Occupational 24 15 9 Location 0.022 At home 186 164 22 At work 20 13 7 Pet shop, fair . . . 5 5 0 * PSS: Poisoning severity score [4]. See Section 6. Table 1. Distribution of exotic reptile bites. 2.2. Circumstances of the Exposure 2.4. Clinical Aspects The bites occurred on the upper limb in 190 cases (87.2%) and on the lower limb in two cases. In one case, there were multiple bites on both the upper and lower limbs. There were nine bites to the head, almost exclusively by snakes belonging to the Boidae family (boids, 7 cases, including a 4-month-old child); however, also by a Pantherophis guttatus in a child, and a bite to the neck by a “rattlesnake” (unidentified species). Finally, there was one case of ocular projection of venom by a spitting cobra, Naja mossambica. p j y p g j The bite of Heloderma suspectum caused only localized symptoms (edema, pain), ac- companied by vomiting and diarrhea. The bites by boids and pythonids were almost all of low severity (PSS 0/1) and associated with local edema, local pain, and even a hematoma or paresthesia. In one case of moderate severity (PSS 2), a patient presented with an edema of the whole hand; this was associated with paresthesia, local pain, and functional impotence of four fingers; and another had a local cutaneous infection. The patient bitten on the thumb by Thrasops flavigularis experienced a burning and crushing sensation, followed by an edema that progressed to the forearm with localized pain along the lymphatic pathway. A diffuse hematoma along the arm was also present. Con- versely, bites by other colubrids (Lampropeltis spp., Pantherophis spp., and Elaphe schrenckii) were consistently mild. In two patients, dysesthesia was also observed. The link between a bite and an infectious syndrome was questioned in two cases; however, no differential diagnosis was evoked. The bite of Ramphiophis oxyrhynchus had no consequences other than a local cutaneous edema. On the other hand, in 3/7 cases of bites by Heterodon nasicus, the initial edema was accompanied by paresthesias of the bitten limb. Finally, in one case, the evolution was not favorable; at hour 12 of the bite, a phlegmon of the digitalocarpal sheath of the fifth finger was observed, associated with a septic and necrotic wound at the bite site. The bite by Aspidelaps lumbricus infuscates was only a dry bite, resulting in no symptoms other than skin puncture. The ocular projection of venom by Naja mossambica resulted in keratitis without uveitis. Bites by the other elapids (including Oxyuranus microlepidotus) were all followed by a local syndrome (local edema up, localized external bleeding or hemorragic lymhedema, and local necrosis). 2.3. Species Involved Finally, in one case, the evolution was not favorable; at hour 12 of the bite, a phlegmon of the digitalocarpal sheath of the fifth finger was observed, associated with a septic and necrotic wound at the bite site. The bite by Aspidelaps lumbricus infuscates was only a dry bite, resulting in no symptoms other than skin puncture. The ocular projection of venom by Naja mossambica resulted in keratitis without uveitis. Bites by the other elapids (including Oxyuranus microlepidotus) were all followed by a local syndrome (local edema up, localized external bleeding or hemorragic lymhedema, and local necrosis). The two cases of Naja naja bites resulted in a minimal neurotoxic syndrome. The bites by Viperinae had only local consequences, with the notable exception of the one bite by Proatheris superciliaris. It led to a hematotoxic syndrome characterized by an edema extending to the groin and necrosis at the bite site. He rapidly developed an acute kidney injury due to renal artery thrombosis; this also explained the severe abdominal pain and, above all, a hypertensive crisis. A diagnosis of renal cortical necrosis, following disseminated intravascular coagulopathy, was finally made. The symptoms reported by patients bitten by crotalids are listed in Table 3. Among the North American rattlesnake bites there was one case of a dry bite by a juvenile rattlesnake (undetermined species) The Table 2. Cont. Species No. of Bites n = 218 PSS * 0 n = 98 PSS 1 n = 89 PSS 2 n = 23 PSS 3 n = 8 Dipsadidae 6 5 1 1 Heterodon nasicus 7 5 1 1 Lamprophiidae 1 1 Rhamphiophis oxyrhynchus 1 1 * PSS: Poisoning severity score [4]. See ‘Material and methods’ section. Table 2. Cont. 2.3. Species Involved The number of different species involved each year appears to have increased overall over the study period, with a maximum of 18 in 2016. All of the species involved are reported in Table 2. Toxins 2022, 14, 570 4 of 11 Species No. of Bites n = 218 PSS * 0 n = 98 PSS 1 n = 89 PSS 2 n = 23 PSS 3 n = 8 Lizards 7 4 2 1 “Exotic lizard” 1 1 Pogona vitticeps 1 1 Heloderma suspectum 1 1 Varanus sp. (incl. V. exanthematicus) 3 1 1 Iguana iguana 1 1 Snakes 211 94 87 22 8 “Exotic snake” 1 1 “Snake from Guyana” 1 1 Elapidae 8 1 2 4 1 Aspidelaps lumbricus infuscates 1 1 “African naja” 1 1 Naja mossambica 1 1 Naja annulifera 1 1 Naja atra 1 1 Naja naja 2 1 1 Oxyuranus microlepidotus 1 1 Viperidae: Viperinae 5 1 3 1 Bitis nasicornis 1 1 Cerastes vipera 1 1 Cerastes cerastes 1 1 Daboia palestinae 1 1 Proatheris supercialiaris 1 1 Viperidae: Crotalinae 28 4 10 9 Agkistrodon contortrix 2 1 1 Bothriechis schlegelii 1 1 Bothriopsis taeniata 1 1 Bothrops asper 1 1 Bothrops atrox 1 1 Bothrops moojeni 1 1 Crotalus sp. 2 1 1 Crotalus atrox 1 1 Crotalus adamanteus 1 1 Crotalus durissus (incl. C. d. durissus and unicolor) 3 1 1 1 Crotalus polystictus 1 1 Crotalus viridis oreganus 1 1 Trimeresurus albolabris 6 1 4 1 Trimeresurus flavomaculatus 2 1 1 Trimeresurus schultzei 1 1 Trimeresurus trigonocephalus 2 1 1 Trimeresurus venustus 1 1 Pythonidae 69 37 3 1 Malayophython reticulatus 1 1 Morelia sp. 2 2 Morelia spilota (incl. M. s. cheyeni and M. s. macdowelli) 2 2 Morelia viridis 1 1 Python sp. 26 16 10 Python molurus 5 3 2 Python regius 32 17 14 1 Boidae 43 24 18 1 Boa sp. 20 12 8 Boa constrictor 18 9 8 1 Boa imperator 4 2 2 Eryx colubrinus 1 1 Colubridae 48 27 18 3 “Exotic colubrid” 3 1 2 Elaphe schrenckii 1 1 Lampropeltis sp. 2 1 1 Lampropeltis californiae 4 3 1 Lampropeltis triangulum (incl. L. t. hondurensis and L. t. campbelli) 4 2 2 Pantherophis sp. 2.3. Species Involved 1 1 Pantherophis bairdi 2 1 1 Pantherophis guttatus 29 17 10 2 Pantherophis obsoletus 1 1 Thrasops flavigularis 1 1 Toxins 2022, 14, 570 5 of 11 Table 2. Cont. Species No. of Bites n = 218 PSS * 0 n = 98 PSS 1 n = 89 PSS 2 n = 23 PSS 3 n = 8 Dipsadidae 6 5 1 1 Heterodon nasicus 7 5 1 1 Lamprophiidae 1 1 Rhamphiophis oxyrhynchus 1 1 * PSS: Poisoning severity score [4]. See ‘Material and methods’ section. 2.4. Clinical Aspects The bites occurred on the upper limb in 190 cases (87.2%) and on the lower limb in two cases. In one case, there were multiple bites on both the upper and lower limbs. There were nine bites to the head, almost exclusively by snakes belonging to the Boidae family (boids, 7 cases, including a 4-month-old child); however, also by a Pantherophis guttatus in a child, and a bite to the neck by a “rattlesnake” (unidentified species). Finally, there was one case of ocular projection of venom by a spitting cobra, Naja mossambica. The bite of Heloderma suspectum caused only localized symptoms (edema, pain), ac- companied by vomiting and diarrhea. The bites by boids and pythonids were almost all of low severity (PSS 0/1) and associated with local edema, local pain, and even a hematoma or paresthesia. In one case of moderate severity (PSS 2), a patient presented with an edema of the whole hand; this was associated with paresthesia, local pain, and functional impotence of four fingers; and another had a local cutaneous infection. The patient bitten on the thumb by Thrasops flavigularis experienced a burning and crushing sensation, followed by an edema that progressed to the forearm with localized pain along the lymphatic pathway. A diffuse hematoma along the arm was also present. Con- versely, bites by other colubrids (Lampropeltis spp., Pantherophis spp., and Elaphe schrenckii) were consistently mild. In two patients, dysesthesia was also observed. The link between a bite and an infectious syndrome was questioned in two cases; however, no differential diagnosis was evoked. The bite of Ramphiophis oxyrhynchus had no consequences other than a local cutaneous edema. On the other hand, in 3/7 cases of bites by Heterodon nasicus, the initial edema was accompanied by paresthesias of the bitten limb. 2.5. Care Management All of the patients bitten by a venomous reptile were hospitalized. Only twenty- eight cases were bitten by an animal that can be treated with an antivenom available in metropolitan France. Of the patients envenomed, only 10 (35.7%) were administered antivenom. They had been bitten by Crotalus sp., Crotalus atrox, Crotalus polystictus, Crotalus durissus, Bothriopsis taeniata, Bothrops asper, and received Antivipmyn Tri® (Bioclon); by Bothrops moojeni and received Bothrofav® (Sanofi); by Naja naja and Naja annulifera, and received FAV Afrique® (Sanofi); and by Bitis nasicornis and (Inoserp Panafrica®). The other patients did not receive any antivenom for one of the following reasons: the grade of envenomation did not justify the use of antivenom (15 cases); the administration of antivenom was refused by the patients (four cases); a lack of knowledge of the species and/or the spectrum of action of the antivenoms (one case); and insufficient paraspecificity (two cases). Two patients underwent fasciotomy (Crotalus atrox, despite the administration of six vials of antivenom, and Thrasops flavigularis). There was also a case of surgical amputa- tion of the forearm (Bothrops asper) and thumb (Naja naja) because of local necrosis. 2.4. Clinical Aspects The two cases of Naja naja bites resulted in a minimal neurotoxic syndrome. The bites by Viperinae had only local consequences, with the notable exception of the one bite by Proatheris superciliaris. It led to a hematotoxic syndrome characterized by an edema extending to the groin and necrosis at the bite site. He rapidly developed an acute kidney injury due to renal artery thrombosis; this also explained the severe abdominal pain and, above all, a hypertensive crisis. A diagnosis of renal cortical necrosis, following disseminated intravascular coagulopathy, was finally made. The symptoms reported by patients bitten by crotalids are listed in Table 3. Among the North American rattlesnake bites, there was one case of a dry bite by a juvenile rattlesnake (undetermined species). The patient reported that the venom glands had been removed prior to purchase. Toxins 2022, 14, 570 6 of 11 Table 3. Reported signs, symptoms and biological disturbances in the patients bitten by crotalids. Reported Signs or Symptoms Number of Cases Local signs Erythema 12 Pain 11 Edema 10 Necrosis, blisters 4 Ecchymosis 4 Bleeding at the skin puncture 1 Compartment syndrome 1 Systemic signs Extensive edema 3 Adenopathy 3 Tachycardia 2 High blood pressure 2 Paresthesia 1 Organic acute kidney injury 1 Hyperthermia 1 Low blood pressure 1 Extensive ischemia 1 Biological perturbations Coagulopathy 3 Increased prothrombin time 3 Hyperleukocytosis 3 Thrombocytopenia 2 Rise in CK 2 Hypofibrinogenemia 1 ns, symptoms and biological disturbances in the patients bitten by crotalids. The severity of the cases is summarized in Table 1. There was no reported death following a bite; however, two cases were left with sequelae, following amputation of a finger in one case of a bite by Naja naja and of a forearm following a bite by Bothrops asper. 3. Discussion The single case of envenomation at night by a rattlesnake suggests that the owners of such animals are more cautious. In just over one in ten cases, the bite occurred in a professional context. The bites were significantly more serious in this case. Several breeding structures were represented in our study. Pet shops sometimes employ staff with little knowledge of the dangerousness of animals and safe care practices [12]. Conversely, the staff of farms for research or venom collection purposes, as well as vivaria open to the public, are better informed of the risks they run. All of them host potentially more dangerous animals than at home, either because of the specific need for certain venoms (for antivenom production) or to meet the expectations of visitors looking for thrills [12]. The activity at the time of the bite shows that certain situations are risky, namely nursing, feeding, and handling. These data are consistent with the results of previous studies in the United States and Australia [10,13]. Food excitement is probably involved in animals that are well fed, but all the more prone to inoculate venom as the possibility of escape is reduced [14]. Obviously, handling is all the more likely because the animals are considered to be non-venomous and not very aggressive. Several avoidable manipulations could have reduced the number of bite cases, in particular during demonstrations to the public, photography sessions, etc. Bites occur mainly on the upper limb (87.2% of cases), in contrast to bites by indigenous snakes [5,15]. Large animals, such as boas, which are thought to be placid, and which owners deliberately place around their necks, tend to bite at the head. A total of twenty-three different species were identified, each with a highly variable number of bite cases. This is probably a consequence of the popularity of these animals. In Europe, the number of reptiles in households is estimated at 7.9 million, with France leading the way with 2.2 million animals, 1 million more than Germany, Italy or Spain [16]. As has been shown, the market for exotic animals is dominated by a small number of popular taxa, especially as the possibility of obtaining color variations is important [17]. Currently, the most successful reptiles in the snake category are Pantherophis guttatus and Boa constrictor. The latter is behaviorally reliable and adapts well to life in captivity. 3. Discussion This work was a comprehensive retrospective study of bites by non-native reptiles re- ported in French PCCs. In France, bites by native vipers cause between 200 and 300 victims per year [5]. In 218 cases of bites by exotic reptiles in 20 years, i.e., an estimated incidence of 3.5 cases per one million inhabitants and less than 5% of the cases of envenomation by reptiles in France, the phenomenon might seem negligible. Indeed, in other countries, the number of bites by non-native snakes far exceeds that attributable to native species. For example, in Hungary, between 1970 and 2006, although the number of bites was compar- atively lower (97 cases), 62.9% of them were caused by an exotic snake [6]. In the Czech Toxins 2022, 14, 570 7 of 11 7 of 11 Republic, 87 cases of bites by Viperidae or Elapidae were recorded in 15 years (1999–2013); or 0.06/100,000 inhabitants/year [7]. Finally, in an article published by four French and German PCC’s, 155 cases of bites by exotic snakes were reported between 1996 and 2006 [8]. Republic, 87 cases of bites by Viperidae or Elapidae were recorded in 15 years (1999–2013); or 0.06/100,000 inhabitants/year [7]. Finally, in an article published by four French and German PCC’s, 155 cases of bites by exotic snakes were reported between 1996 and 2006 [8]. y p The highest incidence of the reported bites was in the regions of Hauts-de-France, Grand-Est, and Provence-Alpes-Côte d’Azur. These are highly urbanized and border regions. According to a WWF report, some retailers’ premises are strategically located and easily accessible to the residents of neighboring countries. Large fairs in Germany or in the Netherlands attract large numbers of reptile enthusiasts [9]. The profile of the patients bitten is similar to what has already been reported from other countries [6,10]. The bite victim was a male patient under 30 years of age. The patients bitten by venomous animals were older; these animals were likely being kept by people with more experience in keeping reptiles in captivity. The presence of (sometimes very young) children in our study is evidence of the presence of animals in the home. Although rarely asked during telephone consultations or even admitted by patients, fatigue and the use of alcohol or drugs are factors that favor bites, as already reported [11]. 3. Discussion Thus, in the present study, we recorded numerous cases of bites by species which are the most frequently held at home. The maxillary and mandibular glands of the powerful constrictor snakes, boa and python, are essentially mucous [18]. Nevertheless, the development of powerful teeth can lead to deep wounds and clinical manifestations; this is sometimes attributed to a toxic potential, but only due to the location of the bite or a disproportionate human reaction [19]. Moreover, due to their size, these snakes represent a potential danger for humans and especially for children, for whom a constriction can be fatal [20,21]. The same applies to colubrids which, although lacking Duvernoy’s glands or special- ized dentition, were likely, in our study as in the literature, to cause a symptomatology that Toxins 2022, 14, 570 8 of 11 goes beyond simple cutaneous effraction. Although this is questionable for Lampropeltis, Elaphe, or Panterophis, the case of a bite by Thrasops falvigularis (the only one reported in the literature [22]) should raise caution. This animal belongs to a tribe that also includes other well-known dangerous species, such as Dyspholidus typus or Thelotornis spp. [23,24]. Close to the Colubridae, Heterodon nasicus (Dipsadidae) causes bites which, although not followed by signs of systemic envenomation, are responsible for moderate to severe local signs (edema, ecchymosis, blisters, and a burning sensation) [25]. Thus, for snake bites, there are clinical manifestations with marked local or even systemic signs in favor of a real envenomation with aglyphous snakes (Heterodon, Thrasops). Some opisthoglyphous species with strong posterior maxillary teeth associated with Duvernoy’s glands could represent an increased risk of envenomation; however, these are very poorly illustrated in this series as they are rarely kept in captivity in France. The only case we report is the bite by Rhamphiophis, which did not have the severity that has already been described for this species [26]. The possibility of microbial infection following snakebites cannot be ruled out. Bacteria from the oral cavity of snakes such as Gram-negative enterobacteriaceae (e.g., Morganella morganii, Proteus spp.), can colonize wounds, and lead to local and systemic complications that can affect the patient’s prognosis [27,28]. Even relying on the kinetics of the onset of symptoms may not help given the sudden onset of some infections in animal bites (e.g., Pasteurella) [29]. 3. Discussion g Patients bitten by Elapidae or Viperidae presented neurotoxic or hematotoxic syn- dromes of varying intensity, respectively, and were consistent with the pictures already widely described ([30–34]). Naja mossambica is a species of African cobra whose ophthalmic effects of venom projection have been well described [35]. Kidney injury caused by the bite of Proatheris superciliaris is a serious, although usual, consequence of envenomation [36]. The low severity of bites by Trimeresurus, popular Asian crotalids because of their beautiful colors, is consistent with observations from the regions in which they are native [37,38]. In order to assist clinicians in the management of bites by venomous species, French breeding centers and PCCs joined forces in 2003 in an association called the ‘Banque des sérums antivenimeux (BSA)’ [39,40]; the aim of the association is to purchase foreign anti- venomous serum that meets French standards of safety and efficacy. The financing of the doses is ensured by the contributions of the breeders themselves. As antivenoms have the status of medicines, they cannot be held outside a hospital pharmacy. The antivenoms are thus distributed among four hospital sites in France, allowing the rapid delivery of the first vials required for treatment. The use of an antivenom has been the only effective specific treatment for snakebites for almost 120 years [41]. The mortality rate from this type of envenomation is extremely low in Western countries, even in the absence of antivenom, probably because of the available means of symptomatic resuscitation [42]. 4. Limitations This work presents the usual limitations of missing data in retrospective studies, for two different reasons. There is no standardized data collection specific to envenomations. Thus, biological results may be missing; especially if they are normal and circumstantial data are too infrequently collected, particularly by toxicologists that are not accustomed to these kinds of cases. Furthermore, despite efforts to complete the data, the questioning of patients is not always conclusive. For example, few patients admit to using drugs or alcohol. Similarly, patients might be unfamiliar with the species they hold, especially when it is acquired through illegal channels or is the result of a crossbreed for aesthetic purposes. 5. Conclusions Most reported venomous reptile encounters involved animals kept in private collec- tions and handled by men. Most bites involved very popular groups of non-venomous reptiles, such as pythons, boas, and colubrids. The most frequent venomous snakes were crotalids from Asia and the Americas, followed by African elapids. A third of venomous Toxins 2022, 14, 570 9 of 11 snakebites lead to antivenom use due to the limited availability of a specific antivenom, mild symptom severity, or patient refusal. snakebites lead to antivenom use due to the limited availability of a specific antivenom, mild symptom severity, or patient refusal. 6. Materials and Methods A retrospective observational study was conducted in all the reported cases of snake bites from 2000 to 2020 in French PCCs. The cases were extracted from the PCC information system, which compiles all the exposure cases collected by the French PCCs during their telephone response to toxicological emergencies. 6.1. Selection of Cases All the cases of bites by a reptile animal belonging to the snakes, anguimorphs (varanids), and iguanids groups, not native to mainland France and reported to the French PCCs, were included. The following data were analyzed: socio-demographic aspects (age, sex, geographical region of the case, place, and time of the bite); the species of reptile involved; the location of the bite; clinical manifestations following the bite; and the severity of the bite. Only the proteoglyphic and solenoglyphic snakes (Elapidae and Viperidae), and the lizard genus Heloderma, were considered venomous in the analysis of the cases. y Severity is calculated from the symptoms, the results of paraclinical examinations, and some recorded medical management. We used the poisoning severity score (PSS) [4]. The severity has five levels: PSS 0, no symptoms; PSS 1, mild severity; PSS 2, moderate severity; PSS 3, high severity; and PSS 4: death. g y The treatments used, when they involved the use of antivenom, were also analyzed. Additional information was sought in the records: the patient’s activity at the time of the bite; the professional or extra-professional context of the bite; and the concomitant use of substances (alcohol, drugs) that could impair judgment or reflexes. 6.2. Statistics We used R software to compare the qualitative variables using the Chi-squared and Fisher exact tests. Author Contributions: G.L.R. and A.D., study concept and design; G.L.R. and French Poison Control Research Group acquisition of the data; G.L.R., drafting of the manuscript; G.G., C.S., S.L. and A.D., critical revision of the manuscript; A.D., statistical expertise. All authors have read and agreed to the published version of the manuscript. Funding: This research received no external funding. Funding: This research received no external funding. Institutional Review Board Statement: The study was carefully reviewed by the local ethics com- mittee and approved as number 2021-202; date 2 June 2022. Informed Consent Statement: Not applicable. Informed Consent Statement: Not applicable. Data Availability Statement: Not applicable. Data Availability Statement: Not applicable. Acknowledgments: The authors would like to thank the staff of the French poison control centers and the members of the Antivenom Bank. Acknowledgments: The authors would like to thank the staff of the French poison control centers and the members of the Antivenom Bank. Acknowledgments: The authors would like to thank the staff of the French poison control centers and the members of the Antivenom Bank. Conflicts of Interest: The authors declare no conflict of interest. Conflicts of Interest: The authors declare no conflict of interest. , , [ ] [ ] 2. Paolino, G.; Di Nicola, M.R.; Pontara, A.; Didona, D.; Moliterni, E.; Mercuri, S.R.; Grano, M.; Borgianni, N.; Kumar, R.; Pampena, R. Vipera snakebite in Europe: A systematic review of a neglected disease. J. Eur. Acad. Dermatol. Venereol. 2020, 34, 2247–2260. [CrossRef] [PubMed] 1. Lamb, T.; de Haro, L.; Lonati, D.; Brvar, M.; Eddleston, M. Antivenom for European vipera species envenoming. Clin. Toxicol. 2017, 55, 557–568. [CrossRef] [PubMed] References 1. Lamb, T.; de Haro, L.; Lonati, D.; Brvar, M.; Eddleston, M. Antivenom for European vipera species envenoming. Clin. Toxicol. 2017, 55, 557–568. [CrossRef] [PubMed] 1. Lamb, T.; de Haro, L.; Lonati, D.; Brvar, M.; Eddleston, M. Antivenom for European vipera species envenoming. Clin. Toxicol. 2017, 55, 557–568. [CrossRef] [PubMed] 2. Paolino, G.; Di Nicola, M.R.; Pontara, A.; Didona, D.; Moliterni, E.; Mercuri, S.R.; Grano, M.; Borgianni, N.; Kumar, R.; Pampena, R. Vipera snakebite in Europe: A systematic review of a neglected disease. J. Eur. Acad. Dermatol. Venereol. 2020, 34, 2247–2260. [CrossRef] [PubMed] 2. Paolino, G.; Di Nicola, M.R.; Pontara, A.; Didona, D.; Moliterni, E.; Mercuri, S.R.; Grano, M.; Borgianni, N.; Kumar, R.; Pampena, R. Vipera snakebite in Europe: A systematic review of a neglected disease. J. Eur. Acad. Dermatol. Venereol. 2020, 34, 2247–2260. [CrossRef] [PubMed] 3. Marshall, B.M.; Strine, C.; Hughes, A.C. Thousands of reptile species threatened by under-regulated global trade. Nat. Commun. 2020, 11, 4738. [CrossRef] [PubMed] 10 of 11 10 of 11 Toxins 2022, 14, 570 4. Persson, H.E.; Sjöberg, G.K.; Haines, J.A.; de Garbino, J.P. Poisoning severity score. Grading of acute poisoning. J. Toxicol. Clin. Toxicol. 1998, 36, 205–213. [CrossRef] 5. Jollivet, V.; Hamel, J.F.; de Haro, L.; Labadie, M.; Sapori, J.M.; Cordier, L.; Villa, A.; Nisse, P.; Puskarczyk, E.; Berthelon, L.; et al. European viper envenomation recorded by French Poison Control Centers: A clinical assessment and management study. Toxicon 2015, 108, 97–103. [CrossRef] [ ] 6. Malina, T.; Krecsák, L.; Korsós, Z.; Takács, Z. Snakebites in Hungary—Epidemiological and clinical aspects over the past 36 years. Toxicon 2008, 51, 943–951. [CrossRef] 7. Valenta, J.; Stach, Z.; Michalek, P. Exotic snake bites in the Czech Republic—Epidemiological and clinical aspects during 15-year period (1999–2013). Clin. Toxicol. 2014, 52, 258–264. [CrossRef] 8. Schaper, A.; Desel, H.; Ebbecke, M.; De Haro, L.; Deters, M.; Hentschel, H.; Hermanns-Clausen, M.; Langer, C. Bites and stings by exotic pets in Europe: An 11 year analysis of 404 cases from Northeastern Germany and Southeastern France. Clin. Toxicol. 2009, 47, 39–43. [CrossRef] 9. Crook, V.; Van der Henst, E. Mettre Un Terme Au Trafic d’espèces Sauvages Sur Internet Dans l’UE. Le Commerce En Ligne de Reptiles et d’oiseaux En Belgique et Aux Pays-Bas; WWF Belgique: Brussels, Belgium, 2020. 10. Warrick, B.J.; Boyer, L.V.; Seifert, S.A. Non-native (exotic) snake envenomations in the U.S., 2005–2011. Toxins 2014, 6, 2899–2911. [CrossRef] 11. Köppel, C.; Martens, F. References Clinical experience in the therapy of bites from exotic snakes in Berlin. Hum. Exp. Toxicol. 1992, 11, 549–552. [CrossRef] 12. de Haro, L. Injury and Envenomation by Exotic Snakes and Other Venomous Pets in Europe. In Clinical Toxinology; Saunders: Philadelphia, PA, USA, 2018; pp. 471–483. ISBN 9789401774383. 13. Isbister, G.K.; Brown, S.G.A. Bites in Australian snake handlers—Australian Snakebite Project (ASP-15). [CrossRef] [PubMed] 14. Clapson, P.; Debien, B.; de Haro, L. Morsures et Piqûres Par Animaux Venimeux En France Métropolitaine. Urgences 2008 2008, 537–546. Available online: https://www.sfmu.org/upload/70_formation/02_eformation/02_congres/Urgences/urgences200 8/donnees/pdf/053_debien.pdf (accessed on 19 August 2022). p p ( g ) 15. Spyres, M.B.; Ruha, A.-M.; Seifert, S.; Onisko, N.; Padilla-Jones, A.; Smith, E.A. Occupational snake bites: A prospective case series of patients reported to the ToxIC North American Snakebite Registry. J. Med. Toxicol. 2016, 12, 365–369. [CrossRef] [PubMed] 16. FEDIAF. Facts & Figures 2019 European Overview; FEDIAF: Brussels, Belgium, 2019. 16. FEDIAF. Facts & Figures 2019 European Overview; FEDIAF: Brussels, Belgium, 2019. g 17. Toland, E.; Bando, M.; Hamers, M.; Cadenas, V.; Laidlaw, R.; Martínez-Silvestre, A.; van der Wielen, P. Turning negatives into positives for pet trading and keeping: A review of positive lists. Animals 2020, 10, 2371. [CrossRef] 18. Fry, B.G.; Casewell, N.R.; Wüster, W.; Vidal, N.; Young, B.; Jackson, T.N.W. The structural and functional diversification of the toxicofera reptile venom system. Toxicon 2012, 60, 434–448. [CrossRef] y rrell, D.A.; White, J.; Keyler, D.E. “Venomous” Bites from Non-Venomous Snakes; Elsevier: Amsterdam, The SBN 9780123877321. 19. Weinstein, S.A.; Warrell, D.A.; White, J.; Keyler, D.E. “Venomous” Bites from Non-Venomous Snakes; El Netherlands, 2011; ISBN 9780123877321. 20. McCarty, V.O.; Cox, R.A.; Haglund, B. Death caused by a constricting snake—An infant death. J. Forensic Sci. 1989, 34, 239–243. [CrossRef] 21. Omalu, B.I.; Dominick, J.T.; Uhrich, T.G.; Wecht, C.H. Letter to the editor. Child Abus. Negl. 2003, 27, 989–991. [CrossRef] 22. Ineich, I.; Goyffon, M. Un cas d’envenimation par un colubridae aglyphe opisthodonte du camero (Hallowell, 1852). In Faut-Il Interdire la Detention de Certaines Couleuvres non Opisth; 2006. 23. Kuch, U.; Mebs, D. Envenomations by colubrid snakes in Africa, Europe, and the Middle East. J. Toxicol.—Toxin Rev. 2002, 21, 159–179. [CrossRef] 24. Broadley, D.G.; Wallach, V. Review of the dispholidini, with the description of a new genus and species from Tanzania (Serpentes, Colubridae). Bull. Nat. Hist. Mus. Zool. Ser. 2002, 68, 57–74. [CrossRef] 25. Weinstein, S.A.; Keyler, D.E. References Local envenoming by the western hognose snake (Heterodon Nasicus): A case report and review of medically significant heterodon bites. Toxicon 2009, 54, 354–360. [CrossRef] 26. Weinstein, S.A.; Griffin, R.; Ismail, A.K. Non-front-fanged colubroid (colubrid) snakebites: Three cases of local envenoming by the mangrove or ringed cat-eyed snake (Boiga dendrophila; Colubridae, Colubrinae), the Western beaked snake (Rhamphiophis oxyrhynchus; Lamprophiidae, Psammophinae) and the rain forest cat-eyed snake (Leptodeira frenata; Dipsadidae). Clin. Toxicol. 2014, 52, 277–282. 27. Wagener, M.; Naidoo, M.; Aldous, C. Wound infection secondary to snakebite. S. Afr. Med. J. 2017, 107, 315–319. [CrossRef] idoo, M.; Aldous, C. Wound infection secondary to snakebite. S. Afr. Med. J. 2017, 107, 315–319. [CrossRef] Á 27. Wagener, M.; Naidoo, M.; Aldous, C. Wound infection secondary to snakebite. S. Afr. Med. J. 2017, 28. Brenes-Chacón, H.; Ulloa-Gutierrez, R.; Soriano-Fallas, A.; Camacho-Badilla, K.; Valverde-Muñoz, K.; Ávila-Agüero, M.L. Bacterial infections associated with viperidae snakebites in children: A 14-year experience at the Hospital Nacional de Niños de Costa Rica. Am. J. Trop. Med. Hyg. 2019, 100, 1227–1229. [CrossRef] [PubMed] p yg 29. Talan, D.A.; Citron, D.M.; Abrahamian, F.M.; Moran, G.J.; Goldstein, E.J. Bacteriologic analysis of infected dog and cat bites. Emergency medicine animal bite infection study group. N. Engl. J. Med. 1999, 340, 85–92. [CrossRef] 30. Larréché, S.; Mion, G.; Clapson, P.; Debien, B.; Wybrecht, D.; Goyffon, M. Neurotoxines ophidiennes. Ann. Françaises D’anesth. Réanim. 2008, 27, 310–316. [CrossRef] 31. Chippaux, J.P. Envenimations et empoisonnements par les animaux venimeux ou veneneux. III. Envenimations par elapidae. Med. Trop. 2007, 67, 9–12. Toxins 2022, 14, 570 11 of 11 11 of 11 32. Dijkema, G.H.; Pat, J.J.; Steffens, M.G. Scrotal necrosis after cobra (Naja annulifera) envenomation. Urol. Case Rep. 2021, 39, 101844. [CrossRef] [PubMed] 33. Yeh, H.; Gao, S.-Y.; Lin, C.-C. Wound infections from Taiwan cobra (Naja atra) bites: Determining bacteriology, antibiotic susceptibility, and the use of antibiotics—A cobra BITE study. Toxins 2021, 13, 183. [CrossRef] 34. Chippaux, J.P. Envenimations et intoxications par les animaux venimeux ou veneneux II. Envenimations par viperidae. Med. Trop. 2006, 66, 423–428. 35. Chu, E.R.; Weinstein, S.A.; White, J.; Warrell, D.A. Venom ophthalmia caused by venoms of spitting elapid and other snakes: Report of ten cases with review of epidemiology, clinical features, pathophysiology and management. Toxicon 2010, 56, 259–272. [CrossRef] [ ] 36. Pourreau, F.; Pinsard, M.; Goyffon, M.; Plasse, F.; Desport, E.; Thierry, A.; Touchard, G.; Bridoux, F. arrell, D.A. Commissioned article: Management of exotic snakebites. QJM 2009, 102, 593–601. [CrossRef] References Bilateral renal cortical necrosis with end-stage renal failure following envenoming by Proatheris superciliaris: A case report. Toxicon 2014, 84, 36–40. [CrossRef] [PubMed] 37. Rojnuckarin, P.; Banjongkit, S.; Chantawibun, W.; Akkawat, B.; Juntiang, J.; Noiphrom, J.; Pakmanee, N.; Intragumtornchai, T. Green pit viper (Trimeresurus albolabris and T. macrops) venom antigenaemia and kinetics in humans. Trop. Dr. 2007, 37, 207–210. [CrossRef] [PubMed] 38. Hutton, R.A.; Looareesuwan, S.; Ho, M.; Silamut, K.; Chanthavanich, P.; Karbwang, J.; Supanaranond, W.; Vejcho, S.; Viravan, C.; Phillips, R.E.; et al. Arboreal green pit vipers (Genus Trimeresurus) of South-East Asia: Bites by T. Albolabris and T. Macrops in Thailand and a review of the literature. Trans. R. Soc. Trop. Med. Hyg. 1990, 84, 866–874. [CrossRef] p yg 39. Boels, D.; Harry, P.; de Haro, L.; Quistinic, P.; Clerc, M.-A.; Lourdais, O. La Banque des Sérums Antivenimeux (BSA) et la prise en charge des envenimations par serpents exotiques en France. Urgence Prat. 2009, 94, 41–44. g p p q g 40. Darsonval, A.; Boels, D.; Clerc, M.-A.; De Haro, L.; Penot-Ragon, C.; Moal, F.; Quistinic, P.; Lourdais, organisation d’une banque des serums antivenimeux en France. Presse Méd. 2010, 39, 865–870. [CrossR g q 41. World Health Organization. Snakebite Envenoming: A Strategy for Prevention and Control; World Health Organization: Geneva, Switzerland, 2019. 42. Warrell, D.A. Commissioned article: Management of exotic snakebites. QJM 2009, 102, 593–601. [CrossRef]
https://openalex.org/W2743512953
http://www.scielo.br/pdf/mr/v20n5/1516-1439-mr-1980-5373-MR-2017-0153.pdf
English
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Effects of Composition and Thermal Treatment of Cu-Al-Zn Alloys with Low Content of Al on their Shape-memory Properties
Materials research
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3,291
Received: January 25, 2017; Revised: June 10, 2017; Accepted: July 21, 2017 Two Cu-Zn-Al alloys with variable content of Zn (25 and 30 wt%) and constant Al content (4 wt%) prepared by induction melting of pure metals and hot rolled into strips of 0.5 mm thickness were thermally processed by using three different heat treatments: direct quenching, step-quenching and up- quenching with boiling water and room temperature water as the quenchants. The effects of composition and different methods of heat treatment on the microstructure and transformation temperatures of the investigated Cu-Zn-Al alloys were investigated using SEM-EDS and DSC techniques. Keywords: Shape memory alloy, Cu-Zn-Al system, Microstructure, DSC. 1. Introduction In this work the shape memory characteristics of two Cu-Zn-Al alloys with constant content of aluminium (4 wt.%) and variable content of zinc (25 and 30 wt.%) were studied. Thus, the focus of the current study was on the Cu-Zn-Al SMAs with low content of aluminium. Effects of composition and thermal processing on the microstructure and transformation temperatures of the investigated alloys were investigated using SEM-EDS and DSC. Shape memory alloys (SMAs) are group of alloys which can recover their shape when they are heated above a certain temperature1. The shape memory effect is based on martensitic transformation (MT) which is a diffusionless and reversible phase transformation2-4. It occurs between the high-temperature austenite phase (β) and the low-temperature martensite phase (β')3-4. It is well known that many copper alloys such as Cu- Al, Cu-Zn-Al, Cu-Al-Ni and Cu-Al-Mn exhibit shape memory properties5-7. Cu-based SMAs have attracted much attention due to their good shape memory capacity, narrow temperature region of transformation, ease of fabrication and low production cost8. Zorica Stošića, Dragan Manasijevića*, Ljubiša Balanovića, Tamara Holjevac-Grgurićb, Uroš Stamenkovića, Milena Premovićc, Duško Minićc, Milan Gorgievskia, Radiša Todorovićd aTechnical Faculty, University of Belgrade, Bor, Serbia bFaculty of Metallurgy, University of Zagreb, Sisak, Croatia cFaculty of Technical Sciences, University of Priština, Kosovska Mitrovica, Serbia dInstitute of Mining and Metallurgy, Bor, Serbia aTechnical Faculty, University of Belgrade, Bor, Serbia bFaculty of Metallurgy, University of Zagreb, Sisak, Croatia Faculty of Technical Sciences, University of Priština, Kosovska Mitrovica, Serbia dInstitute of Mining and Metallurgy, Bor, Serbia * e-mail: dmanasijevic@mts.rs © 2017 © 2017 DOI: http://dx.doi.org/10.1590/1980-5373-MR-2017-0153 Materials Research. 2017; 20(5): 1425-1431 DOI: http://dx.doi.org/10.1590/1980-5373-MR-2017-0153 ; ( ) 3.1 Phase equilibria calculations Fig. 2 shows liquidus projection and phase diagram at 800 ºC of the Cu-Zn-Al system calculated using optimized thermodynamic parameters from Liang and Schmid-Fetzer10 and Pandat software11 with marked overall compositions of the Cu-25%Zn-4%Al and Cu-30%Zn-4%Al alloys investigated in this study. Figure 1. Investigated Cu-25%Zn-4%Al alloy strip. Subsequently, they were etched with a solution containing 2.5 g FeCl3 · 6H2O and 1 ml HCl in 48 ml methanol. From Fig. 2a it can be seen that overall compositions of both investigated alloys belong to the primary crystallization field of β (Bcc) phase. TESCAN VEGA3 scanning electron microscope with energy dispersive spectroscopy (EDS) (Oxford Instruments X-act) was used for microstructure investigation of the prepared alloys and the analysis was carried out at 20 kV. Overall compositions and compositions of coexisting phases were determined using EDS area and point analysis. Also, according to the calculated phase diagram of the Cu-Zn-Al ternary system at 800 ºC presented in Fig. 2b, overall compositions of both investigated alloys are situated in the single β (Bcc) phase region although the composition of the Cu-25%Zn-4%Al is very close to the α + β (Fcc+Bcc) two-phase region. Overall chemical compositions of the investigated Cu-Zn- Al alloys in the as-cast state and after heat treatments were checked using EDS area analysis. Experimentally determined compositions of the investigated alloys (Cu-24.9±0.5Zn- 4.1±0.2Al and Cu-30.0±0.4Zn-4.2±0.3Al (in wt.%)) were in good agreement with their nominal compositions. 2. Experimental Procedure Two Cu-Zn-Al alloys with the nominal compositions Cu-25%Zn-4%Al and Cu-30%Zn-4%Al were prepared by induction melting of calculated quantities of pure (99.9%) copper, zinc and aluminium under a charcoal cover. The alloys were cast into graphite moulds and ingots in the form of cylindrical bars with about 1 cm diameter and 10 cm length were produced. The ingots were hot rolled into 0.5 mm thick strips (Fig. 1). For the alloys of the ternary Cu-Zn-Al system, the shape memory effect is only observed within a certain range of composition which generally contains 16 to 30% of Zn and 4 to 8% of Al3. Depending on alloy composition and temperature, three equilibrium phases (α, β and γ) may occur. However, β phase is the only phase that exhibits the shape memory effect of practical importance. The β phase in the Cu-Zn-Al alloys is disordered at high temperatures and has a bcc lattice3,4. During the cooling process and depending on the alloy composition the parent β-phase can order in two different superlattice structures β2 (B2) and β3 (L21)3,4. By stress-induced or thermally, the β2 or β3 austenite phases transform into the β2' or β3' martensitic phases3,4. Cu-Zn-Al alloys are usually quenched to retain the β phase for further transformation to martensite9. Heat treatments of prepared Cu-Zn-Al strips included β-solutionizing at 850 ºC for 30 minutes followed by: Heat treatments of prepared Cu-Zn-Al strips included β-solutionizing at 850 ºC for 30 minutes followed by: 1) direct quenching into room temperature water; 2) up-quenching - quenching into room temperature water with subsequent ageing at 100 ºC for 30 minutes before quenching again into water at room temperature; 3) step-quenching - quenching into boiling water at 100ºC, remaining at this temperature for 15 minutes and finally cooled in room temperature water; Samples used for the scanning electron microscopy (SEM) observations were mechanically grinded and polished. Samples used for the scanning electron microscopy (SEM) observations were mechanically grinded and polished. Stošić et al. Stošić et al. 1426 Materials Research 3 heating runs from room temperature to 100 ºC with heating rate 5 ºC/min. Figure 1. Investigated Cu-25%Zn-4%Al alloy strip. Martensitic transformation temperatures for directly quenched sample were studied on DSC analyzer Mettler Toledo 822e. Measurements were done in inert atmosphere, through 2 heating/cooling cycles from -50 to 200 ºC with heating/cooling rates 10 ºC/min. 3.3 Microstructures of the heat treated alloys The microstructure of the Cu-25%Zn-4%Al strip after direct quenching, up-quenching and step-quenching is shown in Figs. 4(a)-(c). DSC study was performed several days after the heat- treatments using a SDT Q600 (TA Instruments) simultaneous DSC/TGA analyzer. Samples for the DSC measurements were in the compact thin flat forms which were cut from the heat treated strips. The mass of the investigated samples was about 50 mg. DSC measurements were carried out in three heating runs from room temperature to 100 ºC maintaining a constant heating rate of 5 ºC/min. Samples of the Cu-25%Zn-4%Al alloy strip that were directly quenched into water at room temperature and up- quenched show microstructures that are fully martensitic (Figs. 4a and 4b). Martensitic plates are formed in a V-shape in some grains while they occur needle-like in others12,13. However, microstructure of the of the Cu-25%Zn-4%Al sample that were step-quenched into boiling water for 15 minutes and subsequently cooled in the room temperature water beside martensite phase also includes very fine precipitates of the α phase situated along the grain boundaries and inside the grains (Fig. 4c). The obtained martensitic microstructures are very similar to those reported by Aldirmaz et al.13 and De Araújo and Gonzalez14 for the alloys with chemical compositions very close to the composition of the Cu-25%Zn-4%Al alloy. Fig. 5 shows the microstructures of the Cu-30%Zn-4%Al alloy after direct quenching, up-quenching and step-quenching. As it can be seen from Fig. 5 martensite was not obtained in any of the three differently heat treated samples of the Cu-30%Zn-4%Al alloy. Microstructures of the samples were fully austenite (parent β phase), the same as the microstructure Samples of the Cu-25%Zn-4%Al alloy strip that were directly quenched into water at room temperature and up- quenched show microstructures that are fully martensitic (Figs. 4a and 4b). Martensitic plates are formed in a V-shape in some grains while they occur needle-like in others12,13. However, microstructure of the of the Cu-25%Zn-4%Al sample that were step-quenched into boiling water for 15 minutes and subsequently cooled in the room temperature water beside martensite phase also includes very fine precipitates of the α phase situated along the grain boundaries and inside the grains (Fig. 4c). The obtained martensitic microstructures are very similar to those reported by Aldirmaz et al.13 and De Araújo and Gonzalez14 for the alloys with chemical compositions very close to the composition of the Cu-25%Zn-4%Al alloy. Fig. 3.2 Microstructures of as-cast alloys Microstructures and phase compositions of the Cu-25%Zn- 4%Al and Cu-30%Zn-4%Al alloys in the as-cast states (ingot samples) were investigated using SEM-EDS. Based on the obtained results it was determined that as-cast Cu-25%Zn- Transformation temperatures were determined by SDT Q600 (TA Instruments) simultaneous DSC/TGA analyzer. DSC measurements were done in argon atmosphere through Figure 2 . Calculated phase equilibria of the Cu-Zn-Al ternary system using optimized thermodynamic parameters from Liang and Schmid-Fetzer10 with marked overall compositions (squares) of the investigated Cu-25%Zn-4%Al and Cu-30%Zn-4%Al alloys: (a) liquidus projection; (b) phase diagram at 800 ºC. Figure 2 . Calculated phase equilibria of the Cu-Zn-Al ternary system using optimized thermodynamic parameters from Liang and Schmid-Fetzer10 with marked overall compositions (squares) of the investigated Cu-25%Zn-4%Al and Cu-30%Zn-4%Al alloys: (a) liquidus projection; (b) phase diagram at 800 ºC. Effects of Composition and Thermal Treatment of Cu-Al-Zn Alloys with Low Content of Al on their Shape- memory Properties Effects of Composition and Thermal Treatment of Cu-Al-Zn Alloys with Low Content of Al on their Shape- memory Properties 1427 4%Al alloy has two-phase α+β (Fcc+Bcc) microstructure (Fig. 3a). Microstructure of the as-cast Cu-25%Zn-4%Al alloy includes dendritic α particles with an Fcc structure irregularly distributed in the β matrix. As-cast Cu-30%Zn- 4%Al alloy has single β (Bcc) phase microstructure (Fig. 3b). SEM microphotographs of the investigated alloys in the as-cast states are shown in Fig. 3. of the corresponding alloy in the as-cast condition. Based on the obtained results it can be concluded that the martensite start (Ms) temperature for the Cu-30%Zn-4%Al alloy is below room temperature. 3.4 Thermal analysis of heat-treated Cu-25%Zn- 4%Al alloy Austenite start and finish temperatures (As and Af) for three differently heat-treated samples of the Cu-25%Zn- 4%Al strip alloy with identified martensitic structures were determined by means of DSC technique. 3.3 Microstructures of the heat treated alloys 6 shows obtained DSC curves for three heating runs for directly quenched Cu-25%Zn-4%Al sample with determined austenite start and finish temperatures. Austenite start temperature (As) was obtained as the temperature of the extrapolated peak onset while the austenite finish temperature (Af) was determined as the peak endset temperature on heating. Fig. 5 shows the microstructures of the Cu-30%Zn-4%Al alloy after direct quenching, up-quenching and step-quenching. Summary results of DSC analysis are presented in Table 1. From Table 1 it can be seen that the determined austenite transformation temperature intervals span between 30 to 60 ºC. Austenite start and finish temperatures are slightly shifted to the higher values after the first heating run in all three cases. Obtained transformation temperatures for As it can be seen from Fig. 5 martensite was not obtained in any of the three differently heat treated samples of the Cu-30%Zn-4%Al alloy. Microstructures of the samples were fully austenite (parent β phase), the same as the microstructure Figure 3. SEM micrographs of investigated alloys in the as-cast state: (a) Cu-25%Zn-4%Al alloy, (b) Cu-30%Zn-4%Al alloy. Figure 3. SEM micrographs of investigated alloys in the as-cast state: (a) Cu-25%Zn-4%Al alloy, (b) Cu-30%Zn-4%Al alloy. 1428 Stošić et al. Materials Research Figure 4. SEM micrograph of the Cu-25%Zn-4%Al strip alloy after: (a) direct quenching, (b) up-quenching, (c) step-quenching. Figure 4. SEM micrograph of the Cu-25%Zn-4%Al strip alloy after: (a) direct quenching, (b) up-quenching, (c) step-quenching. Figure 5. SEM micrograph of the Cu-30%Zn-4%Al alloy after: (a) direct quenching, (b) up-quenching, (c) step-quenching. Figure 5. SEM micrograph of the Cu-30%Zn-4%Al alloy after: (a) direct quenching, (b) up-quenching, (c) step-quenching. Effects of Composition and Thermal Treatment of Cu-Al-Zn Alloys with Low Content of Al on their Shape- memory Properties 1429 Figure 6. DSC thermogram for directly quenched Cu-25%Zn-4%Al alloy first heating run; (b) second heating run; (c) third heating run. Figure 6. DSC thermogram for directly quenched Cu-25%Zn-4%Al alloy first heating run; (b) second heating run; (c) third heating run. ite start and finish temperatures and enthalpy of martensite→austenite transformation obtained by DSC analysis Table 1. Austenite start and finish temperatures and enthalpy of martensite→austenite transformation obtained by DSC analysis Sample Transformation temperatures (ºC) Average enthalpy of transformation (J/g) 1. heating run 2. heating run 3. 4. Conclusion 1. Dasgupta R. A look into Cu-based shape memory alloys: Present scenario and future prospects. Journal of Materials Research. 2014;29(16):1681-1698. The effects of heat-treatment on the microstructure and phase transformations of Cu-25%Zn-4%Al and Cu-30%Zn- 4%Al alloys were investigated in this work. The alloys were prepared by induction melting of pure metals and hot rolled into the 0.5 mm thick strips. Obtained alloy strips were subjected to three different heat treatment procedures: direct quenching, step-quenching and up-quenching with boiling water and room temperature water as the quenchants. 2. Guerioune M, Amiour Y, Bounour W, Guellati O, Benaldjia A, Amara A, et al. SHS of shape memory CuZnAl alloys. International Journal of Self-Propagating High-Temperature Synthesis. 2008;17(1):41-48. 3. Blanco M, Barragan JTC, Barelli N, Noce RD, Fugivara CS, Fernández J, et al. On the electrochemical behavior of Cu- 16%Zn-6.5%Al alloy containing the ß'-phase (martensite) in borate buffer. Electrochimica Acta. 2013;107:238-247. Based on the results of microstructure and thermal analysis investigations following conclusions can be made: 1) Microstructure of the as-cast Cu-25%Zn-4%Al alloy consists of β phase in the base and a considerable amount of irregular dendritic α particles with an FCC structure distributed in the β matrix. 4. Ahlers M. Martensite and equilibrium phases in Cu-Zn and Cu-Zn-Al alloys. Progress in Materials Science. 1986;30(3):135- 186. Cu-30%Zn-4%Al alloy in the as-cast state has single- phase microstructure which includes large polygonal grains of β phase. 5. Jani JM, Leary M, Subic A, Gibson MA. A review of shape memory alloy research, applications and opportunities. Materials and Design (1980-2015). 2014;56:1078-1113. 6. da Silva MR, Gargarella P, Gustmann T, Botta Filho WJ, Kiminami CS, Eckert J, et al. Laser surface remelting of a Cu-Al-Ni-Mn shape memory alloy. Materials Science and Engineering: A. 2016;661:61-67. 2) Direct quenching and up-quenching produce fully martensitic microstructure in the Cu-25%Zn-4%Al alloy. Martensite was also induced by step-quenching, but microstructure of the step-quenched Cu-25%Zn-4%Al sample also includes small precipitate particles of α phase. 7. Lojen G, Gojić M, Anžel I. Continuously cast Cu-Al-Ni shape memory alloy - Properties in as-cast condition. Journal of Alloys and Compounds. 2013;580:497-505. 3) Neither one of three heat-treatments performed in this work did not induce martensite in the Cu-30%Zn-4%Al alloy. These results suggest that the martensite start temperature (Ms) for this alloy is below room temperature.i 8. Wang Z, Zu X, Fu Y. Review on the temperature memory effect in shape memory alloys. 3.3 Microstructures of the heat treated alloys heating run As Af As Af As Af 1 (directly quenched alloy) 33.3 53.1 36.0 59.5 36.0 57.2 0.50 2 (up-quenched alloy) 34.2 54.3 34.8 55.7 35.2 56.3 0.49 3 (step-quenched alloy) 32.5 51.3 33.6 54.0 37.8 56.1 0.47 Table 1. Austenite start and finish temperatures and enthalpy of martensite→austenite transformation obtaine Fig. 7 shows DSC curve from the second cooling run. The first transformation is detected as a smaller peak starting at Ms=41.9 ºC and finishing at Mf= 17.0 ºC. The second transformation, which starts at Ms'=10.5 ºC and finishes at Mf'= -25.1 ºC, corresponds to a bigger peak on the DSC curve. These results imply that martensitic transformation occurs in two steps during cooling. the Cu-25%Zn-4%Al alloy determined in this work are somewhat lower than the results of Oliveira et al.15, obtained for the commercial SMA wire with the nominal composition Cu-25.3%Zn-4%Al and 0.9 mm diameter, and Prakash and Harchekar16, who reported a recovery temperature (As) of about 65 ºC for the Cu-26%Zn-4%Al alloy wire. Average enthalpy values of austenitic transformations based on the three heating runs were 0.50 J/g for directly quenched alloy, 0.49 J/g for the up-quenched alloy and 0.47 J/g for the step-quenched alloy. Figure 7. Second DSC cooling run for directly quenched Cu- 25%Zn-4%Al alloy. DSC study of the directly quenched Cu-25%Zn-4%Al alloy has been additionally performed on DSC analyzer Mettler Toledo 822e in two thermal cycles from -50 to 200 ºC maintaining a constant heating/cooling rate of 10 ºC/min. Transformation temperatures obtained on heating were in agreement with the results obtained using SDT Q600 device. However, two distinct exothermic peaks were detected during cooling runs. DSC study of the directly quenched Cu-25%Zn-4%Al alloy has been additionally performed on DSC analyzer Mettler Toledo 822e in two thermal cycles from -50 to 200 ºC maintaining a constant heating/cooling rate of 10 ºC/min. Transformation temperatures obtained on heating were in agreement with the results obtained using SDT Q600 device. However, two distinct exothermic peaks were detected during cooling runs. Figure 7. Second DSC cooling run for directly quenched Cu- 25%Zn-4%Al alloy. 1430 Materials Research Stošić et al. 4. Conclusion International Journal of Smart and Nano Materials. 2011;2(3):101-119. 4) Austenite start and finish transformation temperatures (As, Af) of differently heat-treated Cu-25%Zn-4%Al alloy were investigated using DSC technique. It was determined that martensite to austenite transformation for the Cu- 25%Zn-4%Al alloy occurs in the temperature range from approximately 30 to 60 ºC. Comparison between obtained values of As and Af temperatures revealed small influence of applied heat-treatment processes on austenite start and finish temperatures. 9. Asanovic V, Delijic K, Jaukovic N. A study of transformations of ß-phase in Cu-Zn-Al shape memory alloys. Scripta Materialia. 2008;58(7):599-601. 10. Liang SM, Schmid-Fetzer R. Thermodynamic assessment of the Al-Cu-Zn system, Part III: Al-Cu-Zn ternary system. Calphad. 2016;52:21-37. 11. Cao W, Chen SL, Zhang F, Wu K, Yang Y, Chang YA, et al. PANDAT software with PanEngine, PanOptimizer and PanPrecipitation for multi-component phase diagram calculation and materials property simulation. Calphad. 2009;33(2):328-342. 5) Two close thermal effects in the temperature interval from 42 to -25 ºC were detected during the DSC cooling runs of directly quenched Cu-25%Zn-4%Al alloy. These could be due to the formation of different martensitic structures. 12. Dagdelen F, Gokhan T, Aydogdu A, Aydogdu Y, Adigüzel O. Effects of thermal treatments on transformation behaviour in shape memory Cu-Al-Ni alloys. Materials Letters. 2003;57(5- 6):1079-1085. 15. Oliveira CAN, Gonzalez CH, de Araujo CJ, de Araujo Filho OO, Urtiga Filho SL. Thermoelastic properties on Cu-Zn-Al shape memory springs. Materials Research. 2010;13(2):219-223. 16. Prakash K, Harchekar VR. Optimisation of rebetatising time and temperature for lowering martensitic transformation temperature in Cu- Zn-4% A1 shape memory alloy. Indian Journal of Engineering and Materials Sciences. 1997;4(2):67-70. Effects of Composition and Thermal Treatment of Cu-Al-Zn Alloys with Low Content of Al on their Shape- memory Properties 5. Acknowledgements 13. Aldirmaz E, Celik H, Aksoy I. SEM and X-Ray Diffraction Studies on Microstructures in Cu-26.04%Zn-4.01%Al Alloy. Acta Physica Polonica A. 2013;124(1):87-89. This study was supported by the Ministry of Education, Science and Technological Development, Republic of Serbia, under Project ON 172037. Also, this study was done in the frame of the bilateral project between University of Belgrade, Technical Faculty in Bor (Serbia) and University of Zagreb, Metallurgical faculty in Sisak (Croatia), entitled ''Razvoj karakterizacija inovativnih legura sa efektom pamćenja oblika iz sistema Cu-Al-Mn-Me (Me=Ag, Au, Ce)''. This work has been supported in part by Croatian Science Foundation under the project IP-2014-09-3405. 14. De Araújo CJ, Gonzalez CH. A two-stage transformation in Cu-Zn-Al SMA wires. In: Proceedings of COBEM 2005. 18thInternational Congress of Mechanical Engineering ; 2005 Nov 6-11; Ouro Preto, MG, Brazil. Available from: <http:// www.abcm.org.br/anais/cobem/2005/PDF/COBEM2005-0079. pdf>. Access in: 25/7/2017. 1431 Effects of Composition and Thermal Treatment of Cu-Al-Zn Alloys with Low Content of Al on their Shape- memory Properties
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HardIDX: Practical and Secure Index with SGX
arXiv (Cornell University)
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To cite this version: Ferdinand Brasser, Florian Hahn, Florian Kerschbaum, Ahmad-Reza Sadeghi, Benny Fuhry, et al.. HardIDX: Practical and Secure Index with SGX. 31th IFIP Annual Conference on Data and Ap- plications Security and Privacy (DBSEC), Jul 2017, Philadelphia, PA, United States. pp.386-408, ￿10.1007/978-3-319-61176-1_22￿. ￿hal-01684366￿ HardIDX: Practical and Secure Index with SGX Ferdinand Brasser, Florian Hahn, Florian Kerschbaum, Ahmad-Reza Sadeghi, Benny Fuhry, Raad Bahmani To cite this version: Ferdinand Brasser, Florian Hahn, Florian Kerschbaum, Ahmad-Reza Sadeghi, Benny Fuhry, et al.. HardIDX: Practical and Secure Index with SGX. 31th IFIP Annual Conference on Data and Ap- plications Security and Privacy (DBSEC), Jul 2017, Philadelphia, PA, United States. pp.386-408, ￿10.1007/978-3-319-61176-1_22￿. ￿hal-01684366￿ HardIDX: Practical and Secure Index with SGX Ferdinand Brasser, Florian Hahn, Florian Kerschbaum, Ahmad-Reza Sadeghi, Benny Fuhry, Raad Bahmani Distributed under a Creative Commons Attribution 4.0 International License HardIDX: Practical and Secure Index with SGX Benny Fuhry1, Raad Bahmani2, Ferdinand Brasser2, Florian Hahn1, Florian Kerschbaum3, and Ahmad-Reza Sadeghi2 Benny Fuhry1, Raad Bahmani2, Ferdinand Brasser2, Florian Hahn1, Florian Kerschbaum3, and Ahmad-Reza Sadeghi2 1 SAP Research, {benny.fuhry,florian.hahn}@sap.com, 2 Technische Universität Darmstadt, {r.bahmani,f.brasser,a.sadeghi}@trust.tu-darmstadt.de 3 University of Waterloo, florian.kerschbaum@uwaterloo.ca 1 SAP Research, {benny.fuhry,florian.hahn}@sap.com, 2 Technische Universität Darmstadt, Abstract. Software-based approaches for search over encrypted data are still either challenged by lack of proper, low-leakage encryption or slow performance. Existing hardware-based approaches do not scale well due to hardware limitati- ons and software designs that are not specifically tailored to the hardware ar- chitecture, and are rarely well analyzed for their security (e.g., the impact of side channels). Additionally, existing hardware-based solutions often have a large code footprint in the trusted environment susceptible to software compromises. In this paper we present HardIDX: a hardware-based approach, leveraging Intel’s SGX, for search over encrypted data. It implements only the security critical core, i.e., the search functionality, in the trusted environment and resorts to untrusted software for the remainder. HardIDX is deployable as a highly performant en- crypted database index: it is logarithmic in the size of the index and searches are performed within a few milliseconds. We formally model and prove the security of our scheme showing that its leakage is equivalent to the best known searchable encryption schemes. HAL Id: hal-01684366 https://inria.hal.science/hal-01684366v1 Submitted on 15 Jan 2018 L’archive ouverte pluridisciplinaire HAL, est destinée au dépôt et à la diffusion de documents scientifiques de niveau recherche, publiés ou non, émanant des établissements d’enseignement et de recherche français ou étrangers, des laboratoires publics ou privés. HAL is a multi-disciplinary open access archive for the deposit and dissemination of sci- entific research documents, whether they are pub- lished or not. The documents may come from teaching and research institutions in France or abroad, or from public or private research centers. Distributed under a Creative Commons Attribution 4.0 International License HardIDX: Practical and Secure Index with SGX Benny Fuhry1, Raad Bahmani2, Ferdinand Brasser2, Florian Hahn1, Florian Kerschbaum3, and Ahmad-Reza Sadeghi2 1 SAP Research, {benny.fuhry,florian.hahn}@sap.com, 2 Technische Universität Darmstadt, {r.bahmani,f.brasser,a.sadeghi}@trust.tu-darmstadt.de 3 University of Waterloo, florian.kerschbaum@uwaterloo.ca 1 Introduction Outsourcing the storage and processing of sensitive data to untrusted cloud environ- ment is still considered as too risky due to possible data leakage, government intrusion, and legal liability. The cryptographic solutions Secure Multiparty Computation (MPC) and in particular Fully Homomorphic Encryption (FHE) [23] offer high degree of pro- tection by allowing arbitrary computation on encrypted data, but they are impractical for adoption in large distributed systems [24]. Moreover, there are a number of useful applications that only require a small set of operations. A prime example of such operations is the search and retrieval in an encrypted databases without the need to download all data from the cloud. For this task, different cryptographic schemes have been proposed such as property-preserving encryption [6, 8], or functional encryption [10] and its special case searchable encryp- tion [16,29,41]. In this context, performing efficient and secure range queries are com- monly considered to be very challenging. CryptDB [36] resorts to order-preserving en- cryption for this purpose which is susceptible to simple ciphertext-only attacks as shown by Naveed et al. [34]. Many schemes for search over encrypted data supporting range queries require se- arch time linear in the number of database records. Recently, schemes with polylo- garithmic search time, based on an index structure, have been proposed [17, 19, 29]. In Sect. 7 and Table 2, we elaborate on the search time, query size, storage size and leakage problems of those approaches. Designing an efficient searchable encryption scheme with minimal leakage on the queried ranges remains an open challenge. Another line of research [4, 5] leverages the developments in hardware-assisted Trusted Execution Environments (TEEs) for search over encrypted data. Although In- tel’s recently introduced Software Guard Extension (SGX) [2, 15, 26, 31] has inspired new interest in TEEs, related technologies have been available before, e.g., in ARM pro- cessors known as ARM TrustZone [3] as well as in academic research [12, 42]. Also, AMD has recently announced a TEE for their CPUs [27] rising the hope that TEEs will be widely available in x86 processors, and thus in many relevant environments such as clouds, in the near future. TEEs have to interact with untrustworthy components within the same computer system for various reasons. In order to achieve comprehensive secu- rity, information leakage through those channels has to be considered and taken care of. 1 Introduction Previous SGX based solutions that allow search on encrypted data load and execute the entire unmodified database management system (DBMS) into an enclave [4,5]. They do not formally consider information leakage and do not scale well due to limited memory size of SGX’s enclaves and the large footprint of the code they require in the TEE. Our goal and contribution. We present an efficient scheme for search over encryp- ted data that can be deployed as a database index. SGX’s protection characteristics are utilized to achieve an outstanding tradeoff between security, performance and functio- nality. The currently fastest software-based schemes that support range queries are [17] and [19]. Our solution significantly improves over these approaches in terms of perfor- mance and storage. Compared to the latest hardware-based schemes [4,5], we improve in terms of security and scalability. Our scheme organizes data in a B+-tree structure that is frequently used for databases indexes in most database management systems (DMBSs) [37]. Our solution supports searches for single values and value ranges and it can easily be adapted to many other database (search) operations. We implemented and extensively evaluated our two constructions on SGX-enabled hardware (see Sect. 6). Both have a very small code and memory footprint in the TEE compared to other hardware-based approaches [4,5]. Additionally, our solution scales to arbitrary index sizes as memory usage in the enclave is constant and untrusted resources are used to store the database itself. Our main contributions are as follows: are used to store the database itself. Our main contributions are as follows: – Our scheme has logarithmic complexity in the size of index and searches are perfor- med within a few milliseconds. – We formally model and prove our scheme secure showing that its security (leakage) is comparable to the best known searchable encryption schemes. p yp – We provide an implementation and evaluate the performance and functional bottle- neck of SGX on the basis of two different constructions that are designed specifically for SGX to reduce the Trusted Computing Base. 2.2 Side Channel Attacks Side channel attacks allow an adversary to extract sensitive information without having direct access to the information source by observing effects of the processing of the sensitive information. They have been known for a long time and various variants have been studied in the past, e.g., hardware side channels, software timing side channels and cache timing side channels [13,22,45]. All these attacks are noisy and require repeated execution and measurements to extract the sensitive information. In the context of SGX, there exist a new class of side channels, called deterministic side channel [44]. As the OS is untrusted, yet still manages the enclave’s resources, it can observe the enclaves behavior. In particular, the OS can generate a precise trace of the enclave’s code and data accesses at the granularity of pages. In [44] it is shown that this allows to extract sensitive information from an SGX enclave. 2.1 Intel Software Guard Extensions (SGX) 2.1 Intel Software Guard Extensions (SGX) 2.1 Intel Software Guard Extensions (SGX) SGX is an extension of the x86 instruction set architecture (ISA) introduced with the 6th Generation Intel Core processors (code name Skylake). We now present a high level overview of SGX’s features utilized by HardIDX (see [2,15,26,31] for more details). 2 Memory Isolation. On SGX enabled platforms, programs can be divided into two parts, an untrusted part and an isolated, trusted part. The trusted part, called enclave in SGX terminology, is located in a dedicated portion of the physical RAM. The SGX hardware enforces additional protection on this part of the memory. In particular, all other software on the system, including privileged software like OS, hypervisor and firmware cannot access the enclave memory. The (untrusted) host process can invoke the enclave only through a well-defined interface. Furthermore, all isolated code and data is encrypted while residing outside of the CPU package. Decryption and integrity checks are performed when the data is loaded inside the CPU. p Memory Management. SGX dedicates a fixed amount of the system’s main me- mory (RAM) for enclaves and related metadata. For current systems this memory is limited to 128 MB which is used for both, SGX metadata and the memory for the encla- ves themselves. The enclaves can only be deployed in about 96 MB. The SGX memory is reserved in the early boot phase and is static throughout the runtime of the system. The OS can allocate (parts of) the memory to individual enclaves and change these al- location during the runtime of the enclaves. In particular, the OS can swap out enclave pages. SGX ensures integrity, confidentiality and freshness of swapped-out pages. Attestation. SGX has a remote attestation feature which allows to verify the correct creation of an enclave on a remote system. During enclave creation the initial code and data loaded into the enclave are measured. This measurement can be provided to an external party to prove the correct creation of an enclave. The authenticity of the measurement as well as the fact that the measurement originates from a benign enclave is ensured by a signature, provided by SGX’s attestation feature (refer to [2] for details). Furthermore, the remote attestation feature allows for establishing a secure channel between an external party and an enclave. 3.1 HardIDX Overview A value can be any data such as records in a relational database or files/documents in other database types. The client then encrypts all nodes of the tree with a secret key SKk and all values with SKv. The encrypted B+-tree and encrypted values are deployed on the untrusted server in the cloud (see step 1 in Fig. 14). Initially, a client prepares its data values by augmenting it with (index) search keys. We abbreviate data values as values and the search keys as keys throughout this paper. All other values and keys (e.g., cryptographic keys) are clearly differentiate if ambiguous. The values are stored at pseudo-random position. The keys are then inserted into a B+- tree and the storage order of all nodes is also pseudo-random. The tree and values are linked by adding pointers to the leaves of the tree identifying the random position of the corresponding values. A value can be any data such as records in a relational database or files/documents in other database types. The client then encrypts all nodes of the tree with a secret key SKk and all values with SKv. The encrypted B+-tree and encrypted values are deployed on the untrusted server in the cloud (see step 1 in Fig. 14). The client uses the SGX attestation feature for authenticating the enclave and esta- blishing a secure connection between the client and the enclave (see details in Sect. 2.1). Through this connection, the client provisions SKk into the enclave (see step 2 ). This completes the setup of our scheme, which needs to be executed only once. Now, the client can send (index) search queries to the server that are encrypted with a probabilistic encryption scheme under SKk. Hence, the untrusted server cannot learn anything about the query, not even if the same query was send before. When a query arrives in the enclave, SKk is used to decrypt the query (see step 3 ). In step 4 , the enclave loads the B+-tree structure (tree nodes, but no values) from the untrusted storage into enclave memory and decrypts it. Given sufficient memory, the entire tree is loaded into the enclave and the search is performed afterwards (see step 5 ). As the tree size can exceed the memory available inside the enclave we pro- vide a second design. 4 For visualization purposes, the tree nodes and values are shown to be encrypted as a block. In reality each node and value is encrypted individually. 3.1 HardIDX Overview The high level design of our solution is shown in Fig. 1. The design involves three entities: the client (who is the data owner and therefore trusted), the untrusted SGX enabled server and the trusted SGX enclave within the server. 3 Provision Send Query Return Results Deploy Tree and Data K K V Client Query SGX enabled Server Enclave ... K V Load Tree 5 Search Result List 6 K K Cloud Query K Query 4 V V V 1 2 3 7 Fig. 1: High level design Initially, a client prepares its data values by augmenting it with (index) search keys. We abbreviate data values as values and the search keys as keys throughout this paper. All other values and keys (e.g., cryptographic keys) are clearly differentiate if ambiguous. The values are stored at pseudo-random position. The keys are then inserted into a B+- tree and the storage order of all nodes is also pseudo-random. The tree and values are linked by adding pointers to the leaves of the tree identifying the random position of the corresponding values. A value can be any data such as records in a relational database or files/documents in other database types. The client then encrypts all nodes of the tree with a secret key SKk and all values with SKv. The encrypted B+-tree and encrypted values are deployed on the untrusted server in the cloud (see step 1 in Fig. 14). Provision Send Query Return Results Deploy Tree and Data K K V Client Query SGX enabled Server Enclave ... K V Load Tree 5 Search Result List 6 K K Cloud Query K Query 4 V V V 1 2 3 7 Fig. 1: High level design Client Fig. 1: High level design Fig. 1: High level design Initially, a client prepares its data values by augmenting it with (index) search keys. We abbreviate data values as values and the search keys as keys throughout this paper. All other values and keys (e.g., cryptographic keys) are clearly differentiate if ambiguous. The values are stored at pseudo-random position. The keys are then inserted into a B+- tree and the storage order of all nodes is also pseudo-random. The tree and values are linked by adding pointers to the leaves of the tree identifying the random position of the corresponding values. 3.1 HardIDX Overview In this case, only a subset of tree nodes is loaded into the enclave. The tree is traversed starting from the root node and nodes are fetched from the un- trusted storage if necessary. In both cases the search algorithm eventually reaches a set of leaf nodes, which holds pointers to values matching the query. This list of pointers, representing the search result, is passed to the untrusted part (see step 6 ). The untrus- ted part learns nothing, except for the cardinality of the result set, from this interaction, because the values are stored in a randomized order. The result of the index search could be processed further, e.g. in combination with additional SQL operators, in the SGX enclave at the server. In order to complete the end- to-end secure search, we assume that the server uses the pointers to fetch the encrypted 4 values from untrusted storage and sends them to the client, where they are decrypted with SKv (see step 7 ). Notably, the plaintext values are never available on the server. They are encrypted with strong standard cryptography methods (AES-128 in GCM mode in our case) and never decrypted on the server, not even inside the SGX enclave. SKv is only known to the client. 3.2 Assumptions and Attacker Model. Due to SGX’s protection, the attacker cannot directly access the enclave. However, side channels exist through which the attacker could potentially extract sensitive informa- tion. We assume the attacker has full control over all software on the system running HardIDX. (1) The attacker can observe all interaction of the enclave with resources outside the enclave. In particular, the attacker can observe the access pattern to B+-tree nodes stored outside the enclave. (2) The attacker can use deterministic page-fault side channel to observe data access inside the enclave at page granularity [44]. Through this side channel, the attacker can observe access patterns on the B+-tree stored inside the enclave. (3) The attacker can use cache side channel to learn about code paths or data access patterns inside the enclave, as SGX does not protect against them [15]. Hardware attacks are out of scope in this paper. Furthermore, we consider denial of service (DoS) attacks on the cloud server and network out of scope. In this version, we only assume a passive attacker due to page constraints. We present mitigation strategies for an active attacker in the long version [20]. We furthermore assume as single user and the multi user case in Appendix C. 4.1 B+-tree A B+-tree is a balanced, n-ary search tree. So called search keys are utilized to index values. A B+-tree can be used to search for single values, e.g., unique staff ids are used to find the corresponding database record (see Fig. 2) or for ranges, e.g., a salary index that allows to search for all employees falling in a specific salary range. Root Node Leaf Nodes Internal Nodes 2 15 40 6 80 0 47 9 13 3 15 39 5 40 43 1 47 53 4 80 83 7 47 Hannes Larson ... Gord Batts ... Tristin Tolle ... Emma Brando ... Eva Turner ... Bobb Allrad ... Charlie Thurst ... Serren Pitts ... Lars Derrick ... Donell Wray ... Katie Hamb ... Fig. 2: B+-tree example: the unique staff ids are used as keys and the values are the staff records (random storage position on the left). Fig. 2: B+-tree example: the unique staff ids are used as keys and the values are the staff records (random storage position on the left). Three node types are differentiated in a B+-tree: the root node, internal nodes and leaf nodes. Every node x contains x.#k keys that are stored in a nondecreasing order: 5 x.k1 ≤... ≤x.k(x.#k). At every inner node x (including the root if not the only node), the keys separate the key domain into (x.#k+1) subtrees that are reachable by (x.#k+ 1) child pointers: {x.p0, ..., x.p(x.#k)} = x.p. Every key x.ki has a corresponding pointer x.pi that points to a node containing elements greater than or equal to x.ki and smaller than any other tag x.kj ∀j ∈[i+1, x.#k]. x.p0 points to a node containing only keys, which are smaller than x.k1. No internal node is linked to a value. Instead, every leaf node x stores x.#k keys and a pointer to its corresponding value (x.p0 is not used at the leaves). Every node x in the tree has a unique id x.id and a flag x.isLeaf that stores if the x is a leaf. We denote the B+-tree without the values as B+-tree structure and pxi as the storage position of xi, i.e., the physical memory address. We use unchained B+-trees, i.e., the leafs are not connected. Linked leaves would increase the search performance, but it would severely deteriorate the security. 4.1 B+-tree The reason is that a range query would directly leak the relationship among leaves if links are followed during a query. With HardIDX, it is not necessary to define the key domain D in advance as in many other approaches. D can be an arbitrary domain with a defined order relation and a defined minimal and a maximal element recognizable by the algorithms. These two elements, denoted as −∞and ∞, fulfill the following: −∞< x.k < ∞∀x.k ∈D. The branching factor b specifies a B+-tree by defining the maximal number of poin- ters. b also defines the minimal number of pointer for the different node types, but we do not further elaborate on details. For ease of exposition, we assume that every key and pointer fits in an 32 bit block, but this is no prerequisite for our constructions. 4.2 Probabilistic Symmetric Encryption: A probabilistic authenticated symmetric encryption consists of three probabilistic polynomial-time algorithms PASE = PASE_Gen(1λ), PASE_Enc(SK, v), PASE_Dec( SK, C)  with the usual definitions of functionality. PASE has to be an authenticated IND-CCA secure encryption, e.g., AES-128 in GCM mode. 4.3 Hardware Secured B+-tree (HSBT) Based on the presented definition of a B+-tree, we define the notion of a Hardware Secured B+-tree (HSBT) as follows. We assume that the B+-tree should store a set s of n key-value pairs: s = ((k1, v1), ..., (kn, vn)). This set consists of n values v = (v1, ..., vn) and their corresponding keys k = (k1, ...kn). Definition 1 (HSBT). A secure hardware B+-tree scheme is a tuple of six polynomial- time algorithms HSBT_Setup, HSBT_Enc, HSBT_Tok, HSBT_Dec, HSBT_SearchRange, HSBT_SearchRange_Trusted  . Executed at the server on secure hardware: Executed at the server on secure hardware: P ←HSBT_SearchRange_Trusted(τ, X): Take a search token τ as input. Output a set of pointers P. Definition 2 (Correctness). Let D denote a HSBT-scheme consisting of the six algo- rithms described in Def. 1. We say that D is correct if for all λ ∈N, for all SK output by HSBT_Setup(1λ), for all key-value pairs s used by HSBT_Enc(SK, s) to output γ, for all R used by HSBT_Tok(SK, R) to output τ, for all C′ output by HSBT_Search- Range(τ, γ), the values v′ output by HSBT_Dec(SK, C′) are all values in s for which the corresponding keys k′ fall in R, i.e., v′ = {vi|(ki, vi) ∈s ∧ki ∈[Rs, Re] = R}. Our security model, which we define next, is based on a proof framework introduced by Curtmola et al. in [16]. A description about the proof technique can be found in Appendix A. At security models of searchable encryption schemes so far, the leakage only covers the transaction between the client and server. In our scenario, there is an additional transaction between the server and the secure hardware that can be viewed by the adversary. Therefore, we extend the CKA2-security to CKA2-HW-security by introducing a new type of leakage denoted as Lhw. It consists of the inherent leakage of the used secure hardware and the inputs/outputs to/from the secure hardware. Definition 3 (CKA2-HW-security). Let D denote a HSBT-scheme consisting of the six algorithms described in Def. 1. Consider the probabilistic experiments RealA(λ) and IdealA,S(λ), whereas A is a stateful adversary and S is a stateful simulator that gets the leakage functions Lenc and Lhw. RealA(λ): the challenger runs HSBT_Setup(1λ) to generate a secret key SK. A out- puts a set of key-value pairs s. The challenger calculates γ ←HSBT_Enc(SK, s) and passes γ to A. Afterwards, A makes a polynomial number of adaptive queries for arbitrary ranges R. The challenger returns search tokens τ to A after calcula- ting τ ←HSBT_Tok(SK, R). A can use γ and the returned tokens at any time to make queries to the secure hardware. The secure hardware returns a set of pointers P. Finally, A returns a bit b that is the output of the experiment. IdealA,S(λ): the adversary A outputs a set of key-value pairs s. Using Lenc, S creates γ and passes it to A. Algorithms executed at the client: SK ←HSBT_Setup(1λ): Take the security parameter λ as input and output a secret key SK. γ ←HSBT_Enc(SK, s): Take the secret key SK and a set s of key-value pairs as input. Output an encrypted B+-tree γ. τ ←HSBT_Tok(SK, R): Take the secret key SK and a range R = [Rs, Re] as input. Output a search token τ. v′ ←HSBT_Dec(SK, C′): Take the secret key SK and a set of ciphertext C′ as input. Decrypt the ciphertexts and output plaintext values v′. 6 Executed at the server on untrusted hardware: C′ ←HSBT_SearchRange(τ, γ): Take a search token τ and an encrypted tree γ as input and call the secure hardware function HSBT_SearchRange_Trusted. Output a set of encrypted values C′. 5.1 Construction 1 We sketch our first correct (according to Def. 2) and secure (according to Def. 3) con- struction in this section. A more detailed construction can be found in the long version of the paper [20]. The guiding idea of the construction is that the entire data should be stored and processed inside the enclave. The client constructs the B+-tree locally, encrypts the B+-tree structure and the values with SKk and SKv, respectively (see 5.2 for details). Both are sent to the cloud provider and the SGX application consisting of a trusted and an untrusted part get deployed there. Software measurement as described in Sect. 2.1 is used for remote attestation, i.e., to prove to the client that the correct software is deployed on an SGX enabled CPU. During the deployment, the application reserves an SGX protected memory region (see Sect. 2.1). A secure transfer protocol between client and server (see Sect. 2.1) is used to deploy SKk inside the enclave. Thus SKk is only known by the enclave’s process and the client. The cloud provider and all other processes cannot access this key at any point in time. The next step is to load the B+-tree structure (tree nodes, but no values) from an untrusted to the isolated memory region and use SKk to decrypt the tree nodes. It is important to note that the tree is still protected, because all data inside the enclave is secured by SGX. The values are stored outside of the enclave to save enclave memory. This has no security implications as the values are encrypted with an authenticated IND- CCA secure encryption scheme and they are stored in a randomized order. The enclave is then ready to receive search query tokens τ from the client. The untrusted part relays τ to the trusted part. There, the token gets decrypted and a B+-tree traversal is performed. All pointers that lead to values falling in the queried range are returned in random order. The untrusted part receives pointers to the values, loads the values from memory or disk and passes them to the client. This construction suffers from the substantial problem mentioned before: the me- mory reserved for SGX is limited to 128 MB, and only about 96 MB can be used for data and code. SGX supports a larger enclave size, but enclave pages have to be swapped in and out in this case. Executed at the server on secure hardware: Afterwards, A makes a polynomial number of adaptive queries for arbitrary ranges R. The simulator S creates tokens τ and passes them to A. The adversary A can use γ and the returned tokens at any time to make queries to S (that simulates the secure hardware). S is given Lhw and returns a set of pointers P. Finally, A returns a bit b that is the output of the experiment. IdealA,S(λ): the adversary A outputs a set of key-value pairs s. Using Lenc, S creates γ and passes it to A. Afterwards, A makes a polynomial number of adaptive queries for arbitrary ranges R. The simulator S creates tokens τ and passes them to A. The adversary A can use γ and the returned tokens at any time to make queries to S (that simulates the secure hardware). S is given Lhw and returns a set of pointers P. Finally, A returns a bit b that is the output of the experiment. We say D is Lenc, Lhw  -secure against adaptive chosen-keyword attacks if for all probabilistic polynomial-time algorithms A, there exists a probabilistic polynomial- time simulator S such that |Pr [RealA(λ) = 1] −Pr [IdealA,S(λ) = 1] | ≤negl(λ) 7 5.1 Construction 1 Our evaluation (see Sect. 6) shows that even 50,000,000 values are possible. A B+-tree, however, is only a small part of a full encrypted DBMS based on our constructions. Other components would occupy large regions of the restricted enclave memory and thus further limit the available space. Construction 1 provides a very low leakage (see [20] for details), but it is not usable in a big data cloud scenario, because of the described limitation. Therefore, we present a second construction in the next section. 5 Search Algorithms In this section, we will present two different constructions that enable a client to the search for a single value or a range of values based on keys. We use B+-trees in both constructions to achieve logarithmic search and SGX to protect the confidentiality and integrity of the data. 5.2 Construction 2 An almost standard B+-tree insertion is used for all keys. One difference is that every newly created node x gets an id according to the creation order, i.e., the first node gets id 0 (x.id = 0), the second id 1 (x.id = 1) et cetera. After each pair is inserted, the empty position for keys and pointers in the tree get filled up. More specifically, a node x that contains x.#k keys from the domain gets filled with (b −1 −x.#k) keys ∞and (b −x.#k) dummy pointers. Then, all keys and pointers are padded to a length of 32 bit (this is no prerequisite of our solution). The ids are used by the algorithm to store the nodes at pseudorandom positions: px = Π(SKk, x.id). Now, we have a B+-tree in which every node occupies the same storage space and the order of the nodes and values is random. Finally, PASE_Enc(SKv, ·) is used to encrypt every value and PASE_Enc( SKk, ·) is used to encrypt every node. The encrypted nodes and values form the encrypted tree γ, which is protected by an authenticated IND-CPA secure encryption. τ ←HSBT2_Tok(SKk, R): Use input SKk and R = [Rs, Re] to calculate τ ← PASE_Enc(SKk, Rs||Re) and output τ. Queries for all elements below Re or all ele- ments above Rs can be created by using Rs = −∞or Re = ∞, respectively. v′ ←HSBT2 Dec(SK C′): Use input SK to decrypt the encrypted values C′ γ ←HSBT2_Enc(SK, s): Take SK and s = ((k1, v1), ..., (kn, vn)) as input. Start by storing all values v = (v1, ..., vn) in a random order. An almost standard B+-tree insertion is used for all keys. One difference is that every newly created node x gets an id according to the creation order, i.e., the first node gets id 0 (x.id = 0), the second id 1 (x.id = 1) et cetera. After each pair is inserted, the empty position for keys and pointers in the tree get filled up. More specifically, a node x that contains x.#k keys from the domain gets filled with (b −1 −x.#k) keys ∞and (b −x.#k) dummy pointers. Then, all keys and pointers are padded to a length of 32 bit (this is no prerequisite of our solution). The ids are used by the algorithm to store the nodes at pseudorandom positions: px = Π(SKk, x.id). 5.2 Construction 2 In this section, we describe our second correct (according to Def. 2) and secure (accor- ding to Def. 3) construction. Instead of loading all nodes into the enclave, the main idea 8 is to only load the nodes required to traverse the tree. The challenge is to optimize the communication bottleneck between the untrusted part and the enclave. We performed extensive benchmarking and algorithm engineering in order to identify and minimize the most important run-time consuming tasks, such as switching between the untrusted part and the enclave. The decisive advantage of our second construction is that the re- quired memory space inside the enclave is O(1) for a tree of arbitrary size. The trade-off is that all nodes are stored encrypted inside untrusted main memory or on the untrusted disk and thus have to be decrypted by the enclave before processing. This also leads to a slightly larger leakage than in the first construction, namely a finer-granular access pattern on node instead of page level (details are described by a formal model and proof later). ) The setup of the HSBT-scheme is slightly different than in the first construction in order to implement the described features. As before, the B+-tree is constructed and encrypted at the client and is then transferred to the cloud provider. However, the ap- plication does not reserves memory for the whole B+-tree structure inside the enclave. Instead, it only reserves a fixed space, denoted as reservedSpace, for on the fly pro- cessing. The remote attestation and secure key deployment are performed as in the previous construction. We now describe an HSBT-scheme consisting of six algorithms HSBT2_Setup, HSBT2_Enc, HSBT2_Tok, HSBT2_Dec, HSBT2_SearchRange, HSBT2_SearchRange_- Trusted  that utilizes a pseudorandom permutation Π : {0, 1}λ × {0, 1}log2#x → {0, 1}log2#x in more detail. Note that all but HSBT2_SearchRange and HSBT2_- SearchRange_Trusted exactly match the algorithms utilized for Constr. 1. SK ←HSBT2_Setup(1λ): Use input λ to execute PASE_Gen two times and output SK = SKk, SKv  . SKv and SKk are kept secret at the client. SKk is additionally shared with the server enclave using a secure transport and deployment protocol. The enclave stores SKk inside the isolated enclave. γ ←HSBT2_Enc(SK, s): Take SK and s = ((k1, v1), ..., (kn, vn)) as input. Start by storing all values v = (v1, ..., vn) in a random order. 5.2 Construction 2 The trivial solution is to pass one node after another. A problem with this design is that every context switch from the untrusted to the trusted part or back causes an overhead. We therefore optimized the number of context switches: transfer as many nodes as currently in the queue, but not more than fit into reservedSpace. We denote the maximal number of no- des as maxAmount, which is directly influenced by reservedSpace: maxAmount = reservedSpace/(o · 128 bit) where o is the number of AES-blocks used by each node. Nodes are passed until no further are requested. Then output C′ by dereferen- cing pointers to the values. See Algo. 1 for details. g p g P ←HSBT2_SearchRange_Trusted(τ, X): Take a search token τ and nodes X as input. During the setup phase, SKk was deployed inside the secure hardware. There- fore, the algorithm is able to decrypt all nodes and the token that are encrypted with SKk. Then, search all keys falling in the query range, whereby all keys are accessed. Finally, return the corresponding pointers in a random order together with the plain- text isLeaf tag for each pointer. The tag is necessary, because the untrusted part has no direct access to this encrypted node information. See Algo. 2 for details. P ←HSBT2_SearchRange_Trusted(τ, X): Take a search token τ and nodes X as input. During the setup phase, SKk was deployed inside the secure hardware. There- fore, the algorithm is able to decrypt all nodes and the token that are encrypted with SKk. Then, search all keys falling in the query range, whereby all keys are accessed. Finally, return the corresponding pointers in a random order together with the plain- text isLeaf tag for each pointer. The tag is necessary, because the untrusted part has no direct access to this encrypted node information. See Algo. 2 for details. Algorithm 1 HSBT2_SearchRange(τ, γ) 1: X = ∅ ▷FIFO queue 2: X.ENQUEUE(root) 3: results = ∅ 4: while X ! 5.2 Construction 2 = ∅do 5: for i=0; i < X.size && i < maxAmount; i++ do 6: Xtmp = X.DEQUEUE( ) 7: end for 8: resultstmp = HSBT2_SEARCHRANGE_- TRUSTED(τ, Xtmp) 9: for (isLeaf, p) in resultstmp do 10: if isLeaf then 11: results.ADD(*p) 12: else 13: X.ENQUEUE(*p) 14: end if 15: end for 16: end while 17: return results Algorithm 2 HSBT2_SearchRange_Trusted(τ, X) 1: τP lain = PASE_Dec(SKk, τ) 2: parse τP lain as Rs, Re  3: Xtmp = {PASE_Dec(SKk, *X0), PASE_Dec( SKk, *X1), ...} 4: P = ∅ 5: for x in Xtmp do 6: if not x.isLeaf and Rs < x.k1 then 7: P.ADD(x.p0) 8: end if 9: for i = 1, i < b −1, i++ do 10: if (x.ki ≤Rs < x.ki+1) || (x.ki ≤Re < x.ki+1) || (Rs ≤x.ki && x.ki+1 ≤Re) then 11: P.ADD(x.pi) 12: end if 13: end for 14: if Re ≥x.kb−1 then 15: P.ADD(x.pb−1) 16: end if 17: end for 18: P = random permutation of P 19: return (*P0.isLeaf, P0), (*P1.isLeaf, P1), ... The construction is correct according to Def. 2, because it is based on a textbook B+- tree traversal. The difference to the textbook algorithm is that the nodes are loaded inside the enclave after another and that each node is encrypted. These changes do not influence the correctness, because each node remains accessible to the enclave and the encryption (at the client) and the decryption (inside the enclave) are based on a correct PASE h Algorithm 2 HSBT2_SearchRange_Trusted(τ, X) 1: τP lain = PASE_Dec(SKk, τ) 2: parse τP lain as Rs, Re  3: Xtmp = {PASE_Dec(SKk, *X0), PASE_Dec( SKk, *X1), ...} 4: P = ∅ 5: for x in Xtmp do 6: if not x.isLeaf and Rs < x.k1 then 7: P.ADD(x.p0) 8: end if 9: for i = 1, i < b −1, i++ do 10: if (x.ki ≤Rs < x.ki+1) || (x.ki ≤Re < x.ki+1) || (Rs ≤x.ki && x.ki+1 ≤Re) then 11: P.ADD(x.pi) 12: end if 13: end for 14: if Re ≥x.kb−1 then 15: P.ADD(x.pb−1) 16: end if 17: end for 18: P = random permutation of P 19: return (*P0.isLeaf, P0), (*P1.isLeaf, P1), ... The construction is correct according to Def. 2, because it is based on a textbook B The construction is correct according to Def. 2, because it is based on a textbook B+- tree traversal. 5.2 Construction 2 Now, we have a B+-tree in which every node occupies the same storage space and the order of the nodes and values is random. Finally, PASE_Enc(SKv, ·) is used to encrypt every value and PASE_Enc( SKk, ·) is used to encrypt every node. The encrypted nodes and values form the encrypted tree γ, which is protected by an authenticated IND-CPA secure encryption. 9 C′ ←HSBT2_SearchRange(τ, γ): Take the search token τ and the encrypted tree γ as input. At the beginning, pass only the root node to the trusted part and receive pointers to nodes that should be traversed next. The trivial solution is to pass one node after another. A problem with this design is that every context switch from the untrusted to the trusted part or back causes an overhead. We therefore optimized the number of context switches: transfer as many nodes as currently in the queue, but not more than fit into reservedSpace. We denote the maximal number of no- des as maxAmount, which is directly influenced by reservedSpace: maxAmount = reservedSpace/(o · 128 bit) where o is the number of AES-blocks used by each node. Nodes are passed until no further are requested. Then output C′ by dereferen- cing pointers to the values. See Algo. 1 for details. C′ ←HSBT2_SearchRange(τ, γ): Take the search token τ and the encrypted tree γ as input. At the beginning, pass only the root node to the trusted part and receive pointers to nodes that should be traversed next. The trivial solution is to pass one node after another. A problem with this design is that every context switch from the untrusted to the trusted part or back causes an overhead. We therefore optimized the number of context switches: transfer as many nodes as currently in the queue, but not more than fit into reservedSpace. We denote the maximal number of no- des as maxAmount, which is directly influenced by reservedSpace: maxAmount = reservedSpace/(o · 128 bit) where o is the number of AES-blocks used by each node. Nodes are passed until no further are requested. Then output C′ by dereferen- cing pointers to the values. See Algo. 1 for details. C′ ←HSBT2_SearchRange(τ, γ): Take the search token τ and the encrypted tree γ as input. At the beginning, pass only the root node to the trusted part and receive pointers to nodes that should be traversed next. 5.2 Construction 2 Now, we can specify the node set Y of X as Y = {yi | xi ∈M} ∪{yi | xi ∈T ∧x ∈M ∧xi == x→parentj, j ∈[1, h −1]}. The set of directed edges in X is {(yi, yj) | yi, yj ∈Y ∧∃xi, xj ∈T : xi == xj→parent1}. The time parameter t defines a snapshot of the random (but fixed) order of sibling nodes at a given point in time. See Fig. 3 for an illustrative example. The value pointers access pattern ∆(s, T, R, t) is defined as the pointers to the result values together with the leaf nodes in which these pointers are stored. More formally, ∆(s, T, R, t) = {(x, Px) | x ∈T ∧x.isLeaf ∧∃x.kj ∈R, j ∈[1, b −1] ∧Px = {x.pl | x.kl ∈R, l ∈[1, b −1]}}. The time parameter t defines a random but fixed order of the pointers. 0 29 44 1 59 64 3 34 39 2 13 21 5 39 42 13 29 31 6 13 16 10 59 61 7 44 53 11 34 35 4 24 25 8 64 69 (a) 0 3 7 11 5 13 1 (b) 3 13 5 11 0 7 1 (c) Fig. 3: Illustration of nodes access pattern leakage: (a) example B+-tree T (storage positions on the left), (b) leakage X(s, T, R, t) for R = [33, 55] and B+-tree T at t1, (c) leakage X(s, T, R, t) for R = [33, 55] and B+-tree T at t2 Theorem 1 (Security). The secure hardware B+-tree construction presented above is Lenc, Lhw  -secure according to Def. 3. 0 3 7 11 5 13 1 (b) 3 13 5 11 0 7 1 (c) (c) (b) Fig. 3: Illustration of nodes access pattern leakage: (a) example B+-tree T (storage positions on the left), (b) leakage X(s, T, R, t) for R = [33, 55] and B+-tree T at t1, (c) leakage X(s, T, R, t) for R = [33, 55] and B+-tree T at t2 The idea of the security proof is to describe how a polynomial-time simulator S simulates the encrypted B+-tree γ, the token τ and the secure hardware so that a PPT adversary A can distinguish between RealA(λ) and IdealA,S(λ) with at most negli- gible probability. The detailed proof can be found in Appendix B. The leakage definition and security proofs for Constr. 5.2 Construction 2 For a more formal definition, we denote the set of leaf nodes that contain keys from the range as M, i.e., M = {x | x ∈T ∧x.isLeaf ∧x.kj ∈R, j ∈[1, b −1]}. Additionally, we define x→parent1 as the parent node of x and x→parentj denotes the node that is reached by moving j layers up in the tree starting from x. We denote a node that only contains the storage position of a node xi as yi. Now, we can specify the node set Y of X as Y = {yi | xi ∈M} ∪{yi | xi ∈T ∧x ∈M ∧xi == x→parentj, j ∈[1, h −1]}. The set of directed edges in X is {(yi, yj) | yi, yj ∈Y ∧∃xi, xj ∈T : xi == xj→parent1}. The time parameter t defines a snapshot of the random (but fixed) order of sibling nodes at a given point in time. See Fig. 3 for an illustrative example. The value pointers access pattern ∆(s, T, R, t) is defined as the pointers to the result values together with the leaf nodes in which these pointers are stored. More formally, ∆(s, T, R, t) = {(x, Px) | x ∈T ∧x.isLeaf ∧∃x.kj ∈R, j ∈[1, b −1] ∧Px = {x.pl | x.kl ∈R, l ∈[1, b −1]}}. The time parameter t defines a random but fixed order of the pointers. Lhw(s, T, R, t): Given the key-value pairs s, the plaintext B+-tree T, the search range R and given point in time t, this function outputs the nodes access pattern X(s, T, R, t) and the value pointers access pattern ∆(s, T, R, t). ( , , , ) p p ( , , , ) The nodes access pattern X(s, T, R, t) is a tree that contains the storage positions of all nodes in T that get accessed when searching for the range R. For a more formal definition, we denote the set of leaf nodes that contain keys from the range as M, i.e., M = {x | x ∈T ∧x.isLeaf ∧x.kj ∈R, j ∈[1, b −1]}. Additionally, we define x→parent1 as the parent node of x and x→parentj denotes the node that is reached by moving j layers up in the tree starting from x. We denote a node that only contains the storage position of a node xi as yi. 5.2 Construction 2 The difference to the textbook algorithm is that the nodes are loaded inside the enclave after another and that each node is encrypted. These changes do not influence the correctness, because each node remains accessible to the enclave and the encryption (at the client) and the decryption (inside the enclave) are based on a correct PASE-scheme. 10 Next, we will prove the security of Constr. 2. The first step is to defi functions that are based on the attack model described in Sect. 3. Lenc(s): Given the key-value pairs s = ((k1, v1), ...(kn, vn)), this funct amount n of values, the size of each value and the amount of B+-tree Lhw(s, T, R, t): Given the key-value pairs s, the plaintext B+-tree range R and given point in time t, this function outputs the nodes X(s, T, R, t) and the value pointers access pattern ∆(s, T, R, t). The nodes access pattern X(s, T, R, t) is a tree that contains the stora all nodes in T that get accessed when searching for the range R. For definition, we denote the set of leaf nodes that contain keys from the ra M = {x | x ∈T ∧x.isLeaf ∧x.kj ∈R, j ∈[1, b −1]}. Addition x→parent1 as the parent node of x and x→parentj denotes the node by moving j layers up in the tree starting from x. We denote a node tha the storage position of a node xi as yi. Now, we can specify the node Y = {yi | xi ∈M} ∪{yi | xi ∈T ∧x ∈M ∧xi == x→parentj, j The set of directed edges in X is {(yi, yj) | yi, yj ∈Y ∧∃xi, xj ∈ xj→parent1}. The time parameter t defines a snapshot of the rand order of sibling nodes at a given point in time. See Fig. 3 for an illustr The value pointers access pattern ∆(s, T, R, t) is defined as the pointe values together with the leaf nodes in which these pointers are stored. ∆(s, T, R, t) = {(x, Px) | x ∈T ∧x.isLeaf ∧∃x.kj ∈R, j ∈[1, {x.pl | x.kl ∈R, l ∈[1, b −1]}}. The time parameter t defines a ran order of the pointers. 5.2 Construction 2 0 29 44 1 59 64 3 34 39 2 13 21 5 39 42 13 29 31 6 13 16 10 59 61 7 44 53 11 34 35 4 24 25 8 64 69 (a) 0 3 7 11 5 13 1 (b) Fig. 3: Illustration of nodes access pattern leakage: (a) example B+-tree T (s on the left), (b) leakage X(s, T, R, t) for R = [33, 55] and B+-tree T at X(s, T, R, t) for R = [33, 55] and B+-tree T at t2 Theorem 1 (Security). The secure hardware B+-tree construction pres Lenc, Lhw  -secure according to Def. 3. The idea of the security proof is to describe how a polynomial-tim simulates the encrypted B+-tree γ, the token τ and the secure hardwar adversary A can distinguish between RealA(λ) and IdealA,S(λ) with gible probability. The detailed proof can be found in Appendix B. The leakage definition and security proofs for Constr. 1 are similar ference is the granularity of the tree and value pointers access pattern. I attacker is able to reveal accesses on a node level. In contrast, the attack is able to reveal accesses on page level, because SGX inherently leaks t pattern. Next, we will prove the security of Constr. functions that are based on the attack model des Lenc(s): Given the key-value pairs s = ((k1, v amount n of values, the size of each value an Lhw(s, T, R, t): Given the key-value pairs s range R and given point in time t, this fun X(s, T, R, t) and the value pointers access pa The nodes access pattern X(s, T, R, t) is a tr all nodes in T that get accessed when search definition, we denote the set of leaf nodes tha M = {x | x ∈T ∧x.isLeaf ∧x.kj ∈R, x→parent1 as the parent node of x and x→p by moving j layers up in the tree starting from the storage position of a node xi as yi. Now, Y = {yi | xi ∈M} ∪{yi | xi ∈T ∧x ∈M The set of directed edges in X is {(yi, yj) | xj→parent1}. 5.2 Construction 2 The time parameter t define order of sibling nodes at a given point in time The value pointers access pattern ∆(s, T, R, t values together with the leaf nodes in which t ∆(s, T, R, t) = {(x, Px) | x ∈T ∧x.isLea {x.pl | x.kl ∈R, l ∈[1, b −1]}}. The time p order of the pointers. 0 29 44 1 59 64 3 34 39 2 13 21 5 39 42 13 29 31 6 13 16 10 59 6 7 44 53 11 34 35 4 24 25 8 (a) Fig. 3: Illustration of nodes access pattern leakage: on the left), (b) leakage X(s, T, R, t) for R = X(s, T, R, t) for R = [33, 55] and B+-tree T at t2 Theorem 1 (Security). The secure hardware B Lenc, Lhw  -secure according to Def. 3. The idea of the security proof is to describ simulates the encrypted B+-tree γ, the token τ adversary A can distinguish between RealA(λ gible probability. The detailed proof can be fou The leakage definition and security proofs ference is the granularity of the tree and value p attacker is able to reveal accesses on a node lev is able to reveal accesses on page level, becaus pattern. Next, we will prove the security of Constr. 2. The first step is to define the leakage functions that are based on the attack model described in Sect. 3. Lenc(s): Given the key-value pairs s = ((k1, v1), ...(kn, vn)), this function outputs the amount n of values, the size of each value and the amount of B+-tree nodes #x. Lenc(s): Given the key-value pairs s = ((k1, v1), ...(kn, vn)), this function outputs the amount n of values, the size of each value and the amount of B+-tree nodes #x. amount n of values, the size of each value and the amount of B tree nodes #x. Lhw(s, T, R, t): Given the key-value pairs s, the plaintext B+-tree T, the search range R and given point in time t, this function outputs the nodes access pattern X(s, T, R, t) and the value pointers access pattern ∆(s, T, R, t). The nodes access pattern X(s, T, R, t) is a tree that contains the storage positions of all nodes in T that get accessed when searching for the range R. 5.3 Side Channels Our implementation is concerned with three types of (side) channels: external re- source access, page-fault side channel and cache timing side channel (see Sect. 3). By means of all three channels an adversary can observe access patterns to memory with the goal of inferring sensitive information from the observed access patterns. By monitoring access to external resources, the attacker tries to gain information about the tree structure and ultimately the order of values stored in the database. The only external resources accessed by Constr. 1 are the encrypted values stored at random positions, which does not leak information. Constr. 2 also accesses B+-tree nodes but this is explicitly covered in its leakage. The page-fault side channel allows the attacker to reliably observe memory access patterns at a granularity of 4 kB. All accesses within the same page are indistinguishable for the attacker and, thus, are not exploitable. The implementation of Constr. 1 explicitly considers the leakage of the tree structure through this side channel. In Constr. 2, this side channel does not leak additional information, as nodes are smaller than memory pages and the nodes access pattern is leaked anyway by storing the B+-tree outside of the enclave. Cache timing side channel allow finer grained memory access observations while being less reliable. Nevertheless, assuming an adversary who is able to observe accesses within a node, the attacker needs to determine which links to child nodes are followed. Our algorithm, however, accesses every key and pointer, whether the pointer is fol- lowed or not. By this and other fine grained implementation details, we achieve data independent accesses and thwart the cache timing side channel. Leakage of cryptographic keys are thwarted for page-fault and cache timing side channel by using leakage resilient implementations and hardware features [7]. For in- stance, the AES implementation used in HardIDX holds the S-Boxes in CPU registers instead of RAM to hamper cache side channel attacks [32]. 5.2 Construction 2 1 are similar. The main dif- ference is the granularity of the tree and value pointers access pattern. In Constr. 2, the attacker is able to reveal accesses on a node level. In contrast, the attacker in Constr. 1 is able to reveal accesses on page level, because SGX inherently leaks the page access pattern. 11 Note that the page access leakage is an upper bound in the first construction. Each page allocates 4 kB and every encrypted node consists of one or multiple AES-blocks. Up to k = 4 kB/(o · 128 bit) nodes are contained in one page if o AES-blocks are used by each node. Experiments showed that 102 AES-blocks are used for each node if b = 100 and 32 bit keys and pointers are used. Therefore, even multiple of those huge nodes fit within a single page. 6 Performance Evaluation In this section, we present our evaluation results collected in a number of experiments with real SGX hardware. Our evaluation system was equipped with an Intel Core i7- 6700 processor at 3.40 Ghz and 32 GB DDR4 RAM. 64-bit Ubuntu 14.04.1 extended with SGX support was used as operating system. 6.1 Construction 1 vs. Construction 2 First, we compare the performance of our two constructions. The parameters of the B+-tree are held constant for this comparison: the branching factor is 10 and the tree contains 1,000,000 key-value pairs. Queries with five different sizes of the result set 12 are used: 20, 24, 28, 212, 216. The search ranges were selected uniformly at random and every result size is tested with 1,000 different ranges. Figure 4a depicts the results of this evaluation, whereby the x-axis shows the size of the result set and the y-axis shows the median of the run-times in ms. (a) (b) Fig. 4: (a) Comparison of constructions and (b) effect of different branching factors (a) (b) (b) Fig. 4: (a) Comparison of constructions and (b) effect of different branching factors The performance difference can be explained by the following effects: – Processor mode switch. Before executing inside an enclave, the processor has to switch into “enclave mode”. This includes, e.g., storing the current CPU context on the host process’ stack and loading the CPU context of the enclave. In Constr. 1 only one switch is required, whereas in the Constr. 2 O(logb n) switches are performed, as at least each level of the B+-tree is loaded into the enclave. – Data transfer. In Constr. 1, the data transfer between trusted and the untrusted code is limited to the result set and the query whereas in Constr. 2 also part of the B+-tree is transferred between the two components. – Access to plain data. In Constr. 1, decryption is a one-time effort after loading the entire B+-tree into the enclave. During query processing, it has access to plaintext nodes of the B+-tree. Constr. 2 incrementally loads the B+-tree nodes from untrus- ted storage. All processed nodes need to be decrypted during query processing. Construction 2, therefore, is slower than Constr. 1 by a small factor at any result size. For an increasing size of the result set, both algorithms search a linearly increasing part of the tree. Figure 4a shows that the run-times of our two constructions converge (on a logarithmic scale). This shows that the effects described above diminish compared to the search time of the algorithm. 6.2 Memory Management In order to identify the limiting parameters in the memory management of our two constructions, we evaluate B+-trees with different tree sizes (amounts of key-value pairs) and branching factors. On each tree we ran 1,000 randomly chosen queries with result set size of 100 and tested with the branching factors 10, 25, 50 and 100. The results of these evaluation are depicted in Fig. 4b. The x-axis shows the size of the B+-tree and the y-axis shows the median run-time of the queries. We see a sharp increase of the run-time above a tree size of 106 records. This is due to the exhausted memory in SGX and the virtual memory mechanism of the operating system that swaps pages in and out. This is not security critical, since pages remain 13 encrypted and integrity protected by the SGX system, even when they are swapped out of the SGX protected memory. The figure also reveals a significant difference in the impact of paging between different branching factors. The reason becomes clear by considering the number of required page swaps. The lower the branching factor, the higher the number of nodes in a B+-tree. The higher the number of nodes, the higher the number of accesses to different memory pages. The higher the number of different page accesses, the higher the probability of a swapped out page. We also see that Constr. 2 is not affected by paging, albeit supporting an unlimited tree size. Our data also shows that, as expected, higher branching factors result in better performance and the runtime approaches the runtime of Constr. 1. 6.3 Comparison with Related Work In this section, we compare our Constr. 2 against the currently fastest approach with comparable security features and a security proof presented by Demertzis et al. in [17]. The authors present seven different constructions that support range queries. The con- structions have different tradeoffs regarding security, query size, search time, storage and false positives. We do not compare against the highly secure scheme with prohibi- tive storage cost and also exclude the approaches with false positives as our construction does not lead to false positives. Instead, we compare against the most secure approach without these problems: Logarithmic-URC. We assume that the OXT construction from [14] is used as underlying symmetric searchable encryption scheme (SEE) by Logarithmic-URC. Fundamentally, the SSE scheme is changeable, but the authors of [17] also utilize OXT for the security and per- formance evaluation. One has to note that a quite equal construction as Logarithmic- URC was presented independently by Faber et al. in [19]. We implemented the algo- rithm of [17], but a security and performance comparison to [19] would lead to compa- rable results. Table 1 compares our Constr. 2 and Logarithmic-URC. In this evaluation, we use a branching factor of 100 for Constr. 2 and search for a randomly chosen range that contains 100 results. Every test for the four different tree sizes (100, 1,000, 10,000, 100,000) was performed 1,000 times and the table shows the mean. Table 1: Time comparison of random range queries with Logarithmic-URC [17] and our Constr. 2 Tree Size 100 1,000 10,000 100,000 Logarithmic-URC 0.015 s 0.020 s 0.051 s 1.052 s Const. 2 (b = 100) 0.119 ms 0.121 ms 0.124 ms 0.125 ms Our construction runs in about a tenth of a millisecond and with very moderate increase for all tree sizes. In contrast, Logarithmic-URC requires at least multiple milli- seconds up to a seconds for bigger trees. A reason for the performance difference might be that OXT construction itself is less efficient then our construction. Furthermore, the search time of OXT depends on the number of entries. Logarithmic-URC fills the OXT construction with elements from a binary tree over the domain for every stored key. An increasing domain severely increases the tree height of a binary tree and thus the 14 number of entries for OXT. In contrast, the height of the B+-tree in our construction increases much slower with the tree size. 6.3 Comparison with Related Work It is not trivial to compare Logarithmic-URC and Constr. 2 regarding security. The access pattern leakage and the leakage of the internal data structure of Logarithmic- URC is comparable to our access pattern leakages. However, Logarithmic-URC additi- onally leaks the domain size, the search range size and the search pattern. The search pattern reveals whether the same search was performed before, which might be sensitive information. 7.1 Searchable Encryption Searchable encryption scheme supporting range queries are rare. Table 2 shows a comparison of different searchable encryption schemes and other schemes that sup- port range queries. Note that all existing range-searchable encryption schemes leak the access pattern – including ours. The first range-searchable scheme by Boneh and Waters in [11] encrypt every entry linear in the size of the plaintext domain. The first scheme with logarithmic storage size per entry in the domain was proposed by Shi et al. in [40]. Their security model is somewhat weaker than standard searchable encryp- tion. The construction is based on inner-product predicate encryption which has been made fully secure by Shen et al. in [39]. All of these schemes have linear search time. Lu built the range-searchable encryption from [39] into an index in [29]. He enabled polylogarithmic search time, but his encrypted inverted index tree reveals the order of the plaintexts and is hence only as secure as order-preserving encryption. Wang et al. [43] proposed a multi-dimensional extension of Lu [29], but it suffers from the same problem of order leakage. There is no known searchable encryption schemes for ranges – until ours – that has polylogarithmic search time and leaks only the access pattern. ORAM can in principle be used to hide the access pattern of searchable encryption. However, Naveed shows that the combination of the two is not straightforward [33]. Special ORAM techniques, like TWORAM [21], are needed. Table 2: Comparison of range-searchable encryption schemes. n is the number of keys, D is the size of the plaintext domain and R is the query range size. Scheme Search time Query Size Storage Size Search Pattern Leakage Order Leakage Boneh, Waters [11] O(nD) O(D) O(nD) yes no Shi et al. [40] O(n log D) O(log D) O(n log D) yes no Shen et al. [39] O(n log D) O(log D) O(n log D) no no Lu [29] O(log n log D) O(log D) O(n log D) no yes Demertzis et al. [17] Faber et al. [19] O(log R) O(log R) O(n log D) yes no This papers O(log n) O(1) O(n) no no Table 2: Comparison of range-searchable encryption schemes. n is the number of keys, D is the size of the plaintext domain and R is the query range size. 7.2 Encrypted Databases Encrypted databases, such as CryptDB [36], use property-preserving encryption for ef- ficient search. Property-preserving encryption has very low deployment and runtime 15 overhead due to the ability to use internal index structures of the database engine in the same way as on plain data. Order-preserving encryption [1,8,9,28] allows range queries on the ciphertexts as on the plaintexts. However, Naveed et al. [34] initiated the rese- arch direction of practical ciphertext-only attacks on property-preserving encryption, in particular order-preserving encryption, which recover the plaintext in many cases with very high probability (close to 100%) and further attacks followed [18,25]. Cash et al. [14] introduce a new protocol called OXT that allows evaluation of bool- ean queries on encrypted data. Faber et al. [19] extend this data structure to support range queries but either leak additional information on the queried range or the result set contains false positives. In [17], Demertzis et al. present several approaches for range queries. We provide an experimental and detailed comparison in Sect. 6.3. 7.3 TEE-Based Applications Trusted Database System (TDB) uses a trusted execution environment (TEE) to operate the entire database in a hostile environment [30]. While TDB encrypts the entire data- base storage and metadata, it is not concerned with information leakage from the TEE. Neither does TDB aim at hiding access patterns nor does it consider side channels at- tacks against the TEE. Furthermore, since the entire DB operates in the TEE the trusted computing base is very large exposing a very large attack surface. Haven is an approach to shield application on an untrusted system using SGX [5]. The goal of Haven is to enable the execution of unmodified applications inside an SGX enclave. This technique could be used to isolated off-the-shelf databases with SGX, ho- wever, Haven does not consider information leakages through memory access patterns or interactions with the untrustworthy outside world. Furthermore, this approach limits the size of the database due to limited enclave size. VC3 adapts the MapReduce computing paradigm to SGX [38]. There the data flows between Mapper and Reducer can leak sensitive information and it is excluded from their adversary model. In contrast, we focus on information leakage in the interaction of an enclave with other entities. In [35], SGX protected machine learning algorithms have been adapted to prevent the exploitation of side channels by the usage of data-oblivious primitives. Access to external data is addressed by randomizing the data and always accessing all data, i.e., their solution has an complexity of O(n), even for tree searches. A Proof Framework In [16], Curtmola et al. introduced a three step framework to proof the security of se- archable encryption. The first step is to formulate a leakage, i.e., an upper bound of the information that an adversary can gather from the protocol. Secondly, one defines the RealA(λ) and a IdealA,S(λ) game for an adaptive adversary A and a polynomial time simulator S. RealA(λ) is the execution of the actual protocol and IdealA,S(λ) utilizes S to simulate the real game by using only the formulated leakage. An adaptive adversary can use information learned in previous protocol iterations for its queries. Third, a scheme is CKA2-secure if one can show that A can distinguish the output of the games with probability negligibly close to 0. This in turn means that A does not learn anything besides the leakage stated in the first step, because otherwise he could use this additional information to distinguish the games. 8 Conclusion In this paper, we introduce HardIDX – an approach to search for ranges and values over encrypted data using hardware support making it deployable as a secure index in an encrypted database. We provide a formal security proof explicitly including side channels and an implementation on Intel SGX. Our solution compares favorably with existing software- and hardware-based approaches. We require few milliseconds even for complex searches on large data and scale to almost arbitrarily large indices. We only leak the access pattern and our trusted code protected by SGX hardware is very small exposing a small attack surface. 16 Acknowledgments. This research was co-funded by the German Science Foundation, as part of project P3 within CRC 1119 CROSSING, the European Union’s Horizon 2020 Research and Innovation Programme under grant agreement No. 644412 (TREDI- SEC) and No. 643964 (SUPERCLOUD), and the Intel Collaborative Research Institute for Secure Computing (ICRI-SC). B Lenc, Lhw  -security Proof In Sect. 5.2, we provide the description of Constr. 2 and the leakage of the construction. We now prove Theorem 1 by describing a polynomial-time simulator S for which a PPT adversary A can distinguish between RealA(λ) and IdealA,S(λ) with negligible probability. Proof. The simulator S works as follows: g – Setup: S creates a new random key g SK = PASE_Gen(1λ) and stores it. – Setup: S creates a new random key g SK = PASE_Gen(1λ) and stores it.  ( ) – Simulating γ: S gets Lenc and creates #x nodes X = x1, ..., x#x  filled with random keys, random pointers and increasing node ids. These nodes are stored in the pages ω1, ...ω#ω  . Additionally, S generates n encryptions of random values C C C  i PASE E h b f l d h i f h l – Simulating γ: S gets Lenc and creates #x nodes X = x1, ..., x#x  filled with random keys, random pointers and increasing node ids. These nodes are stored in the pages ω1, ...ω#ω  . Additionally, S generates n encryptions of random values C = C1, ..., Cn  using PASE_Enc, the number of values and the size of the values. Every encrypted value is given a distinct index. S outputs γ = (X, C) All described operations can be executed by S, because the information required for the encryption of values is included in the leakage. The simulated γ has the same size as the output of RealA(λ) and the IND-CCA security of PASE makes the nodes and values indistinguishable from the output of RealA(λ).  Every encrypted value is given a distinct index. S outputs γ = (X, C) y yp g p γ ( , ) All described operations can be executed by S, because the information required for the encryption of values is included in the leakage. The simulated γ has the same size as the output of RealA(λ) and the IND-CCA security of PASE makes the nodes and values indistinguishable from the output of RealA(λ). ( ) – Simulating τ: The simulator S creates two random values r1 and r2 and encrypts them: τ ←PASE_Enc(SKk, Rs||Re). S outputs τ. The simulated τ is indistinguishable from the output of RealA(λ) as a result of the IND-CCA security of PASE. C Multiple Users So far, we considered a setup comprising one user, but multiple user are directly suppor- ted by HardIDX. Multiple users are able to concurrently query data without limitations, as concurrent tree traversals do not influence each other. The only requirement is that each user has access to the key SKk to create query tokens and SKv to decrypt the re- sult. It is also possible that each user shares a different key SKk with the enclave. This would hide the search pattern of one user from all other users, but it requires a small modification in the protocol: the token has to be accompanied by client information, because the enclave has to identify the key to use for the token decryption. The nodes can be encrypted by any key that is known to the enclave. Particularly, it is not required to be a key shared with any user. B Lenc, Lhw  -security Proof – Simulating τ: The simulator S creates two random values r1 and r2 and encrypts them: τ ←PASE_Enc(SKk, Rs||Re). S outputs τ. The simulated τ is indistinguishable from the output of RealA(λ) as a result of the ( , || ) p The simulated τ is indistinguishable from the output of RealA(λ) as a result of the IND-CCA security of PASE. – Simulating secure hardware: At time t, the simulator S receives encrypted nodes (denoted as X), a token τ and Lhw. It has to simulate the output of the secure har- dware enclave. The simulator decrypts every node xi ∈X with PASE_Dec(g SK, xi). We differentiate between two cases for every xi: 17 1. xi is not leaf: S reads the id of xi and searches the corresponding yi in X(s, T, R, t). It returns a pointer to all children in the order defined by t. 1. xi is not leaf: S reads the id of xi and searches the corresponding yi in X(s, T, R, t). It returns a pointer to all children in the order defined by t. A cannot distinguish between the output of RealA(λ) and the simulated output, because the pointers point to indistinguishable nodes according to the IND-CCA security of PASE. Furthermore, the results are consistent for different requests of the same range as the nodes access pattern delivers deterministic results and the pseudorandom permutation creates unambiguous positions for the simulated no- des. The same argument applies for queries of distinct or overlapping ranges. 2. x is leaf: S uses the leakage ∆(s, T, R, t) to output all result pointers P = S x Px, ∀(x, Px) ∈∆in the order defined by t. 2. x is leaf: S uses the leakage ∆(s, T, R, t) to output all result pointers P = S x Px, ∀(x, Px) ∈∆in the order defined by t. x This output is indistinguishable from the output of RealA(λ) as the number of result pointers matches and the pointers are consistent because ∆(s, T, R, t) is unambiguous. The values pointed on are indistinguishable, because they are pro- tected by IND-CCA secure encryption. References 1. Agrawal, R., Kiernan, J., Srikant, R., Xu, Y.: Order preserving encryption for numeric data. In: ACM International Conference on Management of Data. SIGMOD (2004) 2. Anati, I., Gueron, S., Johnson, S.P., Scarlata, V.R.: Innovative Technology for CPU Based Attestation and Sealing. In: Workshop on Hardware and Architectural Support for Security and Privacy. HASP (2013) 3. ARM Limited: ARM Security Technology – Building a Secure System using TrustZone Technology (2009) 4. Bajaj, S., Sion, R.: TrustedDB: A trusted hardware-based database with privacy and data confidentiality. IEEE Transactions on Information Forensics and Security (2014) 5. Baumann, A., Peinado, M., Hunt, G.: Shielding Applications from an Untrusted Cloud with Haven. In: 11th USENIX Symposium on Operating Systems Design and Implementation. OSDI (2014) 6. Bellare, M., Boldyreva, A., O’Neill, A.: Deterministic and efficiently searchable encryption. In: 27th International Conference on Advances in Cryptology. CRYPTO (2007) 18 7. Bernstein, D.J., Lange, T., Schwabe, P.: The Security Impact of a New Cryptographic Li- brary. In: 2nd International Conference on Cryptology and Information Security in Latin America. LATINCRYPT (2012) 8. Boldyreva, A., Chenette, N., Lee, Y., O’Neill, A.: Order-preserving symmetric encryption. In: 28th International Conference on Advances in Cryptology. EUROCRYPT (2009) 9. Boldyreva, A., Chenette, N., O’Neill, A.: Order-preserving encryption revisited: improved security analysis and alternative solutions. In: 31st International Conference on Advances in Cryptology. CRYPTO (2011) 10. Boneh, D., Sahai, A., Waters, B.: Functional encryption: definitions and challenges. In: 8th Conference on Theory of Cryptography. TCC (2011) 11. Boneh, D., Waters, B.: Conjunctive, subset, and range queries on encrypted data. In: 4th Theory of Cryptography Conference. TCC (2007) 12. Brasser, F., El Mahjoub, B., Koeberl, P., Sadeghi, A.R., Wachsmann, C.: TyTAN: Tiny Trust Anchor for Tiny Devices. In: Design Automation Conference. DAC (2015) 13. Brumley, B.B., Tuveri, N.: Remote Timing Attacks Are Still Practical. ESORICS, Springer Berlin Heidelberg (2011) 14. Cash, D., Jarecki, S., Jutla, C., Krawczyk, H., Ro¸su, M.C., Steiner, M.: Highly-scalable se- archable symmetric encryption with support for boolean queries. In: 33rd International Con- ference on Advances in Cryptology. CRYPTO (2013) 15. Costan, V., Devadas, S.: Intel SGX Explained. Tech. rep., IACR Cryptology ePrint Archive, Report 2016/086 16. Curtmola, R., Garay, J., Kamara, S., Ostrovsky, R.: Searchable symmetric encryption: im- proved definitions and efficient constructions. In: 13th ACM Conference on Computer and Communications Security. CCS (2006) 17. Demertzis, I., Papadopoulos, S., Papapetrou, O., Deligiannakis, A., Garofalakis, M.: Practi- cal Private Range Search Revisited. References In: International Conference on Management of Data. SIGMOD (2016) 18. Durak, F.B., DuBuisson, T.M., Cash, D.: What else is revealed by order-revealing encryp- tion? In: Conference on Computer and Communications Security. CCS (2016) 19. Faber, S., Jarecki, S., Krawczyk, H., Nguyen, Q., Rosu, M., Steiner, M.: Rich queries on encrypted data: Beyond exact matches. In: 20th European Symposium on Research in Com- puter Security. ESORICS (2015) 20. Fuhry, B., Bahmani, R., Brasser, F., Hahn, F., Kerschbaum, F., Sadeghi, A.R.: HardIDX: Practical and Secure Index with SGX (2017) 21. Garg, S., Mohassel, P., Papamanthou, C.: TWORAM: efficient oblivious RAM in two rounds with applications to searchable encryption. In: 36th Cryptology Conference. CRYPTO (2016) 22. Genkin, D., Pipman, I., Tromer, E.: Get your hands off my laptop: physical side-channel key-extraction attacks on PCs. Journal of Cryptographic Engineering (2015) 23. Gentry, C.: Fully homomorphic encryption using ideal lattices. In: Symposium on Theory of Computing. STOC (2009) 24. Gentry, C., Halevi, S., Smart, N.P.: Homomorphic evaluation of the AES circuit. In: 32nd International Conference on Advances in Cryptology. CRYPTO (2012) 25. Grubbs, P., Sekniqi, K., Bindschaedler, V., Naveed, M., Ristenpart, T.: Leakage-Abuse At- tacks against Order-Revealing Encryption. Tech. rep., IACR Cryptology ePrint Archive, Re- port 2016/895 26. Hoekstra, M., Lal, R., Pappachan, P., Phegade, V., Del Cuvillo, J.: Using Innovative Instructi- ons to Create Trustworthy Software Solutions. In: Workshop on Hardware and Architectural Support for Security and Privacy. HASP (2013) 27. Kaplan, D., Powell, J., Woller, T.: AMD Memory Encryption (2016) 19 28. Kerschbaum, F., Schröpfer, A.: Optimal average-complexity ideal-security order-preserving encryption. In: 21st ACM Conference on Computer and Communications Security. CCS (2014) 29. Lu, Y.: Privacy-preserving logarithmic-time search on encrypted data in cloud. In: 19th Net- work and Distributed System Security Symposium. NDSS (2012) 30. Maheshwari, U., Vingralek, R., Shapiro, W.: How to Build a Trusted Database System on Untrusted Storage. In: 4th Conference on Symposium on Operating System Design & Im- plementation. OSDI (2000) 31. McKeen, F., Alexandrovich, I., Berenzon, A., Rozas, C.V., Shafi, H., Shanbhogue, V., Sa- vagaonkar, U.R.: Innovative Instructions and Software Model for Isolated Execution. In: Workshop on Hardware and Architectural Support for Security and Privacy. HASP (2013) 32. Mowery, K., Keelveedhi, S., Shacham, H.: Are AES x86 Cache Timing Attacks Still Feasi- ble? In: ACM Workshop on Cloud Computing Security Workshop. CCSW (2012) 33. Naveed, M.: The fallacy of composition of oblivious RAM and searchable encryption. Tech. References rep., IACR Cryptology ePrint Archive, Report 2015/668 34. Naveed, M., Kamara, S., Wright, C.V.: Inference attacks on property-preserving encryp- ted databases. In: 22nd ACM Conference on Computer and Communications Security. CCS (2015) 35. Ohrimenko, O., Schuster, F., Fournet, C., Meht, A., Nowozin, S., Vaswani, K., Costa, M.: Oblivious Multi-Party Machine Learning on Trusted Processors. In: 25th USENIX Security Symposium. USENIX Security (2016) 36. Popa, R.A., Redfield, C.M.S., Zeldovich, N., Balakrishnan, H.: CryptDB: protecting confi- dentiality with encrypted query processing. In: Proceedings of the 23rd ACM Symposium on Operating Systems Principles. SOSP (2011) 37. Ramakrishnan, R., Gehrke, J.: Database Management Systems, 3rd Edition. McGraw-Hill, 3rd edn. (2002) 38. Schuster, F., Costa, M., Fournet, C., Gkantsidis, C., Peinado, M., Mainar-Ruiz, G., Russino- vich, M.: VC3: Trustworthy Data Analytics in the Cloud Using SGX. In: IEEE Symposium on Security and Privacy. S&P (2015) 39. Shen, E., Shi, E., Waters, B.: Predicate privacy in encryption systems. In: 6th Theory of Cryptography Conference. TCC (2009) 40. Shi, E., Bethencourt, J., Chan, H.T.H., Song, D.X., Perrig, A.: Multi-dimensional range query over encrypted data. In: IEEE Symposium on Security and Privacy. S&P (2007) 41. Song, D.X., Wagner, D., Perrig, A.: Practical techniques for searches on encrypted data. In: IEEE Symposium on Security and Privacy. S&P (2000) 42. Strackx, R., Piessens, F., Preneel, B.: Efficient Isolation of Trusted Subsystems in Embedded Systems. In: SecureComm (2010) 43. Wang, B., Hou, Y., Li, M., Wang, H., Li, H.: Maple: Scalable Multi-dimensional Range Search over Encrypted Cloud Data with Tree-based Index. In: 9th ACM Symposium on Information, Computer and Communications Security. ASIACCS (2014) 44. Xu, Y., Cui, W., Peinado, M.: Controlled-Channel Attacks: Deterministic Side Channels for Untrusted Operating Systems. In: IEEE Symposium on Security and Privacy. S&P (2015) 45. Yarom, Y., Falkner, K.: FLUSH+RELOAD: A High Resolution, Low Noise, L3 Cache Side- Channel Attack. In: 23rd USENIX Security Symposium. USENIX Security (2014) 20
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ERROR: type should be string, got "https://doi.org/10.5194/egusphere-2023-2087\nPreprint. Discussion started: 28 September 2023\nc⃝Author(s) 2023. CC BY 4.0 License. Structure, variability, and origin of the low-latitude nightglow\ncontinuum between 300 and 1,800 nm: evidence for HO2 emission\nin the near-infrared Stefan Noll1,2, John M. C. Plane3, Wuhu Feng3,4, Konstantinos S. Kalogerakis5, Wolfgang Kausch6,\nCarsten Schmidt2, Michael Bittner2,1, and Stefan Kimeswenger6,7\n1Institut für Physik, Universität Augsburg, Augsburg, Germany\n2Deutsches Fernerkundungsdatenzentrum, Deutsches Zentrum für Luft- und Raumfahrt, Oberpfaffenhofen, Germany\n3School of Chemistry, University of Leeds, Leeds, UK\n4National Centre for Atmospheric Science, University of Leeds, Leeds, UK\n5Center for Geospace Studies, SRI International, Menlo Park, CA, USA\n6Institut für Astro- und Teilchenphysik, Universität Innsbruck, Innsbruck, Austria\n7Instituto de Astronomía, Universidad Católica del Norte, Antofagasta, Chile\nCorrespondence: S. Noll (stefan.noll@dlr.de) Stefan Noll1,2, John M. C. Plane3, Wuhu Feng3,4, Konstantinos S. Kalogerakis5, Wolfgang Kausch6,\nCarsten Schmidt2, Michael Bittner2,1, and Stefan Kimeswenger6,7\n1Institut für Physik, Universität Augsburg, Augsburg, Germany\n2Deutsches Fernerkundungsdatenzentrum, Deutsches Zentrum für Luft- und Raumfahrt, Oberpfaffenhofen, Germany\n3School of Chemistry, University of Leeds, Leeds, UK\n4National Centre for Atmospheric Science, University of Leeds, Leeds, UK\n5Center for Geospace Studies, SRI International, Menlo Park, CA, USA\n6Institut für Astro- und Teilchenphysik, Universität Innsbruck, Innsbruck, Austria\n7Instituto de Astronomía, Universidad Católica del Norte, Antofagasta, Chile\nCorrespondence: S. Noll (stefan.noll@dlr.de) Stefan Noll1,2, John M. C. Plane3, Wuhu Feng3,4, Konstantinos S. Kalogerakis5, W\nCarsten Schmidt2, Michael Bittner2,1, and Stefan Kimeswenger6,7 Abstract. The Earth’s mesopause region between about 75 and 105 km is characterised by chemiluminescent emission from\nvarious lines of different molecules and atoms. This emission was and is important for the study of the chemistry and dynam-\nics in this altitude region at nighttime. However, our understanding is still very limited with respect to molecular emissions\nwith low intensities and high line densities that are challenging to resolve. Based on 10 years of data from the astronomical X-shooter echelle spectrograph at Cerro Paranal in Chile, we have characterised in detail this nightglow (pseudo-)continuum\n5\nin the wavelength range from 300 to 1,800 nm. We studied the spectral features, derived continuum components with similar\nvariability, calculated climatologies, studied the response to solar activity, and even estimated the effective emission heights. The results indicate that the nightglow continuum at Cerro Paranal essentially consists of only two components, which exhibit\nvery different properties. The main structures of these components peak at 595 and 1,510 nm. While the former was previously identified as the main peak of the FeO ‘orange arc’ bands, the latter is a new discovery. https://doi.org/10.5194/egusphere-2023-2087\nPreprint. Discussion started: 28 September 2023\nc⃝Author(s) 2023. CC BY 4.0 License. Structure, variability, and origin of the low-latitude nightglow\ncontinuum between 300 and 1,800 nm: evidence for HO2 emission\nin the near-infrared Laboratory data and theory indicate\n10\nthat this feature and other structures between about 800 and at least 1,800 nm are caused by emission from the low-lying A′′\nand A′ states of HO2. In order to test this assumption, we performed runs with the Whole Atmosphere Community Climate\nModel (WACCM) with modified chemistry and found that the total intensity, layer profile, and variability indeed support this\ninterpretation, where the excited molecules HO2 are mostly produced from the termolecular recombination of H and O2. The identified as the main peak of the FeO ‘orange arc’ bands, the latter is a new discovery. Laboratory data and theory indicate\n10\nthat this feature and other structures between about 800 and at least 1,800 nm are caused by emission from the low-lying A′′\nand A′ states of HO2. In order to test this assumption, we performed runs with the Whole Atmosphere Community Climate\nModel (WACCM) with modified chemistry and found that the total intensity, layer profile, and variability indeed support this\ninterpretation, where the excited molecules HO2 are mostly produced from the termolecular recombination of H and O2. The WACCM results for the continuum component that dominates at visual wavelengths show good agreement for FeO from the re-\n15\naction of Fe and O3. However, the simulated total emission appears to be too low, which would require additional mechanisms\nwhere the variability is dominated by O3. WACCM results for the continuum component that dominates at visual wavelengths show good agreement for FeO from the re-\n15\naction of Fe and O3. However, the simulated total emission appears to be too low, which would require additional mechanisms\nwhere the variability is dominated by O3. 1 1 1\nIntroduction Moreover, part instruments with high resolving power were not able to distinguish individual lines, i.e. it would be a pseudo-continuum. In any\n35\ncase, the observation of such a (pseudo-)continuum is more challenging than the study of well-resolved emission lines. The\napplied instrument needs to have a sufficiently high resolving power to clearly separate the continuum from the well-known\nemission bands and lines. As the continuum can be quite faint compared to the strong lines, even the wings of the line-spread\nfunction and possible straylight inside the instrument can be an issue, together with low signal-to-noise ratios. Moreover, part of the night-sky radiance is related to extraterrestrial light sources and scattering inside the atmosphere (e.g., Leinert et al.,\n40\n1998). In particular, scattered moonlight, integrated and scattered starlight, zodiacal light, and possible light pollution can be\nsignificant sources of radiation. Hence, such components (which might be quite uncertain) need to be subtracted to measure\nthe nightglow continuum (e.g., Sternberg and Ingham, 1972; Noll et al., 2012; Trinh et al., 2013). Despite the potential difficulties Barbier et al (1951) first noted a possible continuum in the green wavelength range In of the night-sky radiance is related to extraterrestrial light sources and scattering inside the atmosphere (e.g., Leinert et al.,\n40\n1998). In particular, scattered moonlight, integrated and scattered starlight, zodiacal light, and possible light pollution can be\nsignificant sources of radiation. Hence, such components (which might be quite uncertain) need to be subtracted to measure\nthe nightglow continuum (e.g., Sternberg and Ingham, 1972; Noll et al., 2012; Trinh et al., 2013). Despite the potential difficulties, Barbier et al. (1951) first noted a possible continuum in the green wavelength range. In Despite the potential difficulties, Barbier et al. (1951) first noted a possible continuum in the green wavelength range. In\nthe subsequent decades, additional constraints were found for a continuum in the visual wavelength range between 400 and\n45\n720 nm (Davis and Smith, 1965; Broadfoot and Kendall, 1968; Sternberg and Ingham, 1972; Gadsden and Marovich, 1973;\nMcDade et al., 1986), where the density of strong emission lines is relatively low. This continuum appeared to have a flux of\nseveral Rayleigh per nanometre (R nm−1) with an increasing trend towards longer wavelengths and a possible local maximum\n(or at least plateau) near 600 nm (e.g., Gadsden and Marovich, 1973). 1\nIntroduction At wavelengths shorter than about 1,800 nm, the Earth’s atmospheric radiation at nighttime is essentially caused by non-\nthermal chemiluminescence, i.e. photon emission by excited atomic and molecular states that are populated as a result of\n20\nchemical reactions. Most of this nightglow emission originates at altitudes between 75 and 105 km in the mesopause region. The most prominent emitting species are hydroxyl (OH) and molecular oxygen (O2), which cause various ro-vibrational bands\nof emission lines from the near-ultraviolet (near-UV) to the near-infrared (near-IR) (Rousselot et al., 2000; Cosby et al., 2006;\nNoll et al., 2012). Especially strong emission is found above 1,400 nm, where OH bands of the electronic ground level with a vibrational level change ∆v of 2, e.g. OH(3-1), are located. Bands with higher ∆v that can be found at shorter wavelengths are\n25\nsignificantly weaker. Strong emission is also related to O2(b-X)(0-0) near 762 nm and O2(a-X)(0-0) near 1,270 nm. However,\nboth bands suffer from strong self-absorption in the lower atmosphere, which makes it particularly challenging to observe any\nemission of the former band from the ground. Intrinsically weaker but not self-absorbed O2 bands are (b-X)(0-1) near 865 nm\nand O2(a-X)(0-1) near 1,580 nm. Moreover, there are many weak O2 bands at near-UV and blue wavelengths (Slanger and Copeland, 2003; Cosby et al., 2006). In addition, especially the visual range shows atomic emission lines. Prominent examples\n30\nare the atomic oxygen (O) lines at 558, 630, and 636 nm and the sodium (Na) doublet at 589 nm (e.g., Cosby et al., 2006; Noll\net al., 2012). Apart from individual emission lines, which have a typical width of a few picometres, the nightglow also includes an under-\nlying continuum component. It could consist of line emissions if there were such a high line density that even spectroscopic instruments with high resolving power were not able to distinguish individual lines, i.e. it would be a pseudo-continuum. In any\n35\ncase, the observation of such a (pseudo-)continuum is more challenging than the study of well-resolved emission lines. The\napplied instrument needs to have a sufficiently high resolving power to clearly separate the continuum from the well-known\nemission bands and lines. As the continuum can be quite faint compared to the strong lines, even the wings of the line-spread\nfunction and possible straylight inside the instrument can be an issue, together with low signal-to-noise ratios. 1\nIntroduction Krassovsky (1951) already proposed that this continuum\ncould be produced by the reaction\n50 the subsequent decades, additional constraints were found for a continuum in the visual wavelength range between 400 and\n45\n720 nm (Davis and Smith, 1965; Broadfoot and Kendall, 1968; Sternberg and Ingham, 1972; Gadsden and Marovich, 1973;\nMcDade et al., 1986), where the density of strong emission lines is relatively low. This continuum appeared to have a flux of\nseveral Rayleigh per nanometre (R nm−1) with an increasing trend towards longer wavelengths and a possible local maximum\n(or at least plateau) near 600 nm (e.g., Gadsden and Marovich, 1973). Krassovsky (1951) already proposed that this continuum the subsequent decades, additional constraints were found for a continuum in the visual wavelength range between 400 and\n45\n720 nm (Davis and Smith, 1965; Broadfoot and Kendall, 1968; Sternberg and Ingham, 1972; Gadsden and Marovich, 1973;\nMcDade et al., 1986), where the density of strong emission lines is relatively low. This continuum appeared to have a flux of\nseveral Rayleigh per nanometre (R nm−1) with an increasing trend towards longer wavelengths and a possible local maximum\n(or at least plateau) near 600 nm (e.g., Gadsden and Marovich, 1973). Krassovsky (1951) already proposed that this continuum could be produced by the reaction\n50\nNO + O →NO2 + hν. (R1) (R1) 2 2 The main peak between 580\n85 which had already been identified by Jenniskens et al. (2000) in the persistent train of a Leonid meteor observed by an airborne\noptical spectrograph. Their laboratory-based spectrum of these FeO ‘orange arc’ bands (see also, West and Broida, 1975;\n65\nBurgard et al., 2006) also matched the OSIRIS spectrum quite well. This interpretation implies that the low-latitude nightglow\nspectrum around 600 nm can mainly be explained by a pseudo-contiuum consisting of various ro-vibrational bands produced\nfrom the FeO electronic transitions D 5∆i and D′ 5∆i to X 5∆i (Cheung et al., 1983; Merer, 1989; Barnes et al., 1995; Gattinger\net al., 2011a). Based on the small OSIRIS data set covering five 24 h periods, Evans et al. (2010) also found a good correlation optical spectrograph. Their laboratory-based spectrum of these FeO ‘orange arc’ bands (see also, West and Broida, 1975;\n65\nBurgard et al., 2006) also matched the OSIRIS spectrum quite well. This interpretation implies that the low-latitude nightglow\nspectrum around 600 nm can mainly be explained by a pseudo-contiuum consisting of various ro-vibrational bands produced\nfrom the FeO electronic transitions D 5∆i and D′ 5∆i to X 5∆i (Cheung et al., 1983; Merer, 1989; Barnes et al., 1995; Gattinger\net al., 2011a). Based on the small OSIRIS data set covering five 24 h periods, Evans et al. (2010) also found a good correlation of the pseudo-continuum and the Na chemiluminescence, which also depends on a reaction with ozone (O3) and involves a\n70\nchemical element supplied by the ablation of cosmic dust (e.g., Plane et al., 2015). Covariations of Fe and Na densities in the\nmesopause region were previously measured by lidar (e.g., Kane and Gardner, 1993). The corresponding results for the layer\nheights of both metals also appear to agree well with the results from the OSIRIS data suggesting a 3 km lower continuum\nemission layer with a peak at about 87 km. The confidence in the FeO scenario further increased by the analysis of nine nights of the pseudo-continuum and the Na chemiluminescence, which also depends on a reaction with ozone (O3) and involves a\n70\nchemical element supplied by the ablation of cosmic dust (e.g., Plane et al., 2015). Covariations of Fe and Na densities in the\nmesopause region were previously measured by lidar (e.g., Kane and Gardner, 1993). https://doi.org/10.5194/egusphere-2023-2087\nPreprint. Discussion started: 28 September 2023\nc⃝Author(s) 2023. CC BY 4.0 License. The emission produced by this reaction, termed the NO2 air afterglow, was observed in laboratory discharge experiments\nand has a pressure-dependent maximum, which is located around 580 nm for relevant atmospheric densities (Fontijn et al.,\n1964; Becker et al., 1972). Space-based measurements of the emission profile showed a peak between 90 to 95 km (von\nSavigny et al., 1999; Gattinger et al., 2009, 2010; Semenov et al., 2014a). First indicated by ship-based latitude-dependent\n55\nmeasurements (Davis and Smith, 1965) and then studied in more detail with the Optical Spectrograph and Infrared Imaging\nSystem (OSIRIS) onboard the Odin satellite (Gattinger et al., 2009, 2010), the emission is about an order of magnitude weaker\nat low latitudes compared with the polar regions, where typical values near 580 nm are of the order of 10 R nm−1. However, Evans et al. (2010) found that an average OSIRIS spectrum for the low latitude range from 0 to 40◦S did not However, Evans et al. (2010) found that an average OSIRIS spectrum for the low latitude range from 0 to 40 S did not\nmatch the expected spectral distribution of the NO2 air afterglow from Reaction R1 because the data showed a more complex\n60\nstructure with a conspicuous relatively narrow maximum near 600 nm. As an alternative explanation, they proposed emission\nfrom electronically excited iron monoxide (FeO) produced by match the expected spectral distribution of the NO2 air afterglow from Reaction R1 because the data showed a more complex\n60\nstructure with a conspicuous relatively narrow maximum near 600 nm. As an alternative explanation, they proposed emission\nfrom electronically excited iron monoxide (FeO) produced by Fe + O3 →FeO∗+ O2,\n(R2) Fe + O3 →FeO∗+ O2, (R2) which had already been identified by Jenniskens et al. (2000) in the persistent train of a Leonid meteor observed by an airborne which had already been identified by Jenniskens et al. (2000) in the persistent train of a Leonid meteor observed by an airborne\noptical spectrograph. Their laboratory-based spectrum of these FeO ‘orange arc’ bands (see also, West and Broida, 1975;\n65\nBurgard et al., 2006) also matched the OSIRIS spectrum quite well. This interpretation implies that the low-latitude nightglow\nspectrum around 600 nm can mainly be explained by a pseudo-contiuum consisting of various ro-vibrational bands produced\nfrom the FeO electronic transitions D 5∆i and D′ 5∆i to X 5∆i (Cheung et al., 1983; Merer, 1989; Barnes et al., 1995; Gattinger\net al., 2011a). Based on the small OSIRIS data set covering five 24 h periods, Evans et al. (2010) also found a good correlation\nof the pseudo-continuum and the Na chemiluminescence, which also depends on a reaction with ozone (O3) and involves a\n70\nchemical element supplied by the ablation of cosmic dust (e.g., Plane et al., 2015). Covariations of Fe and Na densities in the\nmesopause region were previously measured by lidar (e.g., Kane and Gardner, 1993). The corresponding results for the layer\nheights of both metals also appear to agree well with the results from the OSIRIS data suggesting a 3 km lower continuum\nemission layer with a peak at about 87 km. The confidence in the FeO scenario further increased by the analysis of nine nights\nof sky radiance data obtained from the Echelle Spectrograph and Imager (ESI) at the Keck II telescope on Mauna Kea, Hawaii\n75\n(20◦N) (Saran et al., 2011). The spectral range from 500 to 680 nm showed a structure with a peak at about 595 nm consistent\nwith laboratory data (West and Broida, 1975). A slight shift of these (and also the OSIRIS) data of about 5 nm towards longer\nwavelengths could be explained by a higher effective vibrational excitation due to the low frequency of quenching collisions at\nthe lower pressures in the mesopause region (Gattinger et al., 2011a). To date, the most detailed analysis of the shape of the FeO\norange bands and their variability was reported by Unterguggenberger et al. (2017), based on 3,662 spectra of the X-shooter\n80\nechelle spectrograph (Vernet et al., 2011) of the Very Large Telescope at Cerro Paranal in Chile (24.6◦S, 70.4◦W). Clear\nseasonal variations similar to those of the Na nightglow, which were analysed in the same study, were found. These variations\ncould be characterised by a combination of an annual and a semiannual oscillation (AO and SAO) with relative amplitudes\nof 17 and 27% and maxima in June/July and April/October, respectively. Strong nocturnal trends were not observed. The\nspectrum (after subtraction of other sky radiance components) appeared to have a stable structure. The corresponding results for the layer\nheights of both metals also appear to agree well with the results from the OSIRIS data suggesting a 3 km lower continuum\nemission layer with a peak at about 87 km. The confidence in the FeO scenario further increased by the analysis of nine nights of sky radiance data obtained from the Echelle Spectrograph and Imager (ESI) at the Keck II telescope on Mauna Kea, Hawaii\n75\n(20◦N) (Saran et al., 2011). The spectral range from 500 to 680 nm showed a structure with a peak at about 595 nm consistent\nwith laboratory data (West and Broida, 1975). A slight shift of these (and also the OSIRIS) data of about 5 nm towards longer\nwavelengths could be explained by a higher effective vibrational excitation due to the low frequency of quenching collisions at\nthe lower pressures in the mesopause region (Gattinger et al., 2011a). To date, the most detailed analysis of the shape of the FeO of sky radiance data obtained from the Echelle Spectrograph and Imager (ESI) at the Keck II telescope on Mauna Kea, Hawaii\n75\n(20◦N) (Saran et al., 2011). The spectral range from 500 to 680 nm showed a structure with a peak at about 595 nm consistent\nwith laboratory data (West and Broida, 1975). A slight shift of these (and also the OSIRIS) data of about 5 nm towards longer\nwavelengths could be explained by a higher effective vibrational excitation due to the low frequency of quenching collisions at\nthe lower pressures in the mesopause region (Gattinger et al., 2011a). To date, the most detailed analysis of the shape of the FeO of sky radiance data obtained from the Echelle Spectrograph and Imager (ESI) at the Keck II telescope on Mauna Kea, Hawaii\n75\n(20◦N) (Saran et al., 2011). The spectral range from 500 to 680 nm showed a structure with a peak at about 595 nm consistent\nwith laboratory data (West and Broida, 1975). A slight shift of these (and also the OSIRIS) data of about 5 nm towards longer\nwavelengths could be explained by a higher effective vibrational excitation due to the low frequency of quenching collisions at\nthe lower pressures in the mesopause region (Gattinger et al., 2011a). To date, the most detailed analysis of the shape of the FeO orange bands and their variability was reported by Unterguggenberger et al. Unterguggenberger et al. (2017) did not see clear contributions of the reaction At wavelengths above 900 nm, Sobolev (1978) provided estimates of about 9 R nm−1 at 927 nm and about 17 R nm−1 at\n1,061 nm based on 5 nights of spectroscopic data from Zvenigorod, Russia (57◦N). However, a flux of about 16 R nm−1\nat 821 nm from the same study is distinctly higher than the result of Noxon (1978) for a similar wavelength. On the other 369 to 872 nm. While the region around the FeO main peak (maximum of about 6 R nm−1) looks realistic, the steep rise at the\n105\nlongest wavelengths is obviously related to the low resolving power of only a few hundred. At wavelengths above 900 nm, Sobolev (1978) provided estimates of about 9 R nm−1 at 927 nm and about 17 R nm−1 at\n1,061 nm based on 5 nights of spectroscopic data from Zvenigorod, Russia (57◦N). However, a flux of about 16 R nm−1\nat 821 nm from the same study is distinctly higher than the result of Noxon (1978) for a similar wavelength. On the other hand, the Cerro Paranal sky model provides for about 20 R nm−1 at 1,062 nm. In the range between 1,032 and 1,775 nm, the\n110\ncontinuum model was coarsely derived from a small sample of 26 near-IR spectra from the relatively new medium-resolution\nX-shooter spectrograph (Noll et al., 2014), where the quality of the flux calibration and possible instrument-related continuum\ncontaminations were not yet known. In the set of considered wavelengths, the residual continuum (after subtraction of other sky\nradiance components) shows a minimum (for regions not affected by water vapour absorption) of about 9 R nm−1 at 1,238 nm hand, the Cerro Paranal sky model provides for about 20 R nm−1 at 1,062 nm. In the range between 1,032 and 1,775 nm, the\n110\ncontinuum model was coarsely derived from a small sample of 26 near-IR spectra from the relatively new medium-resolution\nX-shooter spectrograph (Noll et al., 2014), where the quality of the flux calibration and possible instrument-related continuum\ncontaminations were not yet known. In the set of considered wavelengths, the residual continuum (after subtraction of other sky\nradiance components) shows a minimum (for regions not affected by water vapour absorption) of about 9 R nm−1 at 1,238 nm and a maximum of about 87 R nm−1 at 1,521 nm. An increased flux level was also measured by Trinh et al. Unterguggenberger et al. (2017) did not see clear contributions of the reaction Unterguggenberger et al. (2017) did not see clear contributions of the reaction Unterguggenberger et al. (2017) did not see clear contributions of the reaction (R3) Ni + O3 →NiO∗+ O2 with a bluer spectrum (Burgard et al., 2006; Gattinger et al., 2011b), i.e. with an expected rise of the flux between 450 and\n90\n500 nm instead of around 550 nm as in the case of FeO. This is in contrast to the results for an average spectrum of the GLO-1\ninstrument on the Space Shuttle mission STS 53, where a ratio of the NiO and FeO intensities integrated between 350 and\n670 nm of 2.3 ± 0.2 was determined (Evans et al., 2011). However, the same study also investigated OSIRIS mean spectra of\nJune/July over a period of three years, which resulted in much smaller ratios of 0.3±0.1, 0.1±0.1, and 0.05±0.05 that better with a bluer spectrum (Burgard et al., 2006; Gattinger et al., 2011b), i.e. with an expected rise of the flux between 450 and\n90\n500 nm instead of around 550 nm as in the case of FeO. This is in contrast to the results for an average spectrum of the GLO-1\ninstrument on the Space Shuttle mission STS 53, where a ratio of the NiO and FeO intensities integrated between 350 and\n670 nm of 2.3 ± 0.2 was determined (Evans et al., 2011). However, the same study also investigated OSIRIS mean spectra of\nJune/July over a period of three years, which resulted in much smaller ratios of 0.3±0.1, 0.1±0.1, and 0.05±0.05 that better with a bluer spectrum (Burgard et al., 2006; Gattinger et al., 2011b), i.e. with an expected rise of the flux between 450 and\n90\n500 nm instead of around 550 nm as in the case of FeO. This is in contrast to the results for an average spectrum of the GLO-1\ninstrument on the Space Shuttle mission STS 53, where a ratio of the NiO and FeO intensities integrated between 350 and\n670 nm of 2.3 ± 0.2 was determined (Evans et al., 2011). However, the same study also investigated OSIRIS mean spectra of\nJune/July over a period of three years, which resulted in much smaller ratios of 0.3±0.1, 0.1±0.1, and 0.05±0.05 that better agree with Unterguggenberger et al. (2017). Evans et al. Unterguggenberger et al. (2017) did not see clear contributions of the reaction (2011) also fitted the NO2 contribution from Reaction R1 relative to\n95\nFeO and found ratios of 0.6, 0.2, and 0.0 with an uncertainty of 0.1. The correlation of these ratios with those for NiO and the\nextreme variation of the latter suggest large uncertainties with respect to the impact of NiO nightglow. At wavelengths slightly longer than 700 nm, early publications indicated a significant increase of the radiance (Broadfoot At wavelengths slightly longer than 700 nm, early publications indicated a significant increase of the radiance (Broadfoot\nand Kendall, 1968; Sternberg and Ingham, 1972; Gadsden and Marovich, 1973). However, the rocket-based measurement of and Kendall, 1968; Sternberg and Ingham, 1972; Gadsden and Marovich, 1973). However, the rocket-based measurement of\nMcDade et al. (1986) in Scotland (57◦N) only showed a moderate radiance of 5.6 R nm−1 at 714 nm and Noxon (1978)\n100\nmeasured an average of 7 R nm−1 at 857 nm based on 15 nights at the Fritz Peak Observatory in Colorado (44◦N). Low\nsignal-to-noise ratios and the increasing strength of molecular nightglow emission lines (OH and O2) made measurements\nquite challenging. The latter can also be seen in the shape of the nightglow continuum of the Cerro Paranal sky model (25◦S)\nderived by Noll et al. (2012), based on 874 spectra of the FORS 1 spectrograph covering a maximum wavelength range from McDade et al. (1986) in Scotland (57◦N) only showed a moderate radiance of 5.6 R nm−1 at 714 nm and Noxon (1978)\n100\nmeasured an average of 7 R nm−1 at 857 nm based on 15 nights at the Fritz Peak Observatory in Colorado (44◦N). Low\nsignal-to-noise ratios and the increasing strength of molecular nightglow emission lines (OH and O2) made measurements\nquite challenging. The latter can also be seen in the shape of the nightglow continuum of the Cerro Paranal sky model (25◦S)\nderived by Noll et al. (2012), based on 874 spectra of the FORS 1 spectrograph covering a maximum wavelength range from 369 to 872 nm. While the region around the FeO main peak (maximum of about 6 R nm−1) looks realistic, the steep rise at the\n105\nlongest wavelengths is obviously related to the low resolving power of only a few hundred. (2017), based on 3,662 spectra of the X-shooter\n80\nechelle spectrograph (Vernet et al., 2011) of the Very Large Telescope at Cerro Paranal in Chile (24.6◦S, 70.4◦W). Clear\nseasonal variations similar to those of the Na nightglow, which were analysed in the same study, were found. These variations\ncould be characterised by a combination of an annual and a semiannual oscillation (AO and SAO) with relative amplitudes\nof 17 and 27% and maxima in June/July and April/October, respectively. Strong nocturnal trends were not observed. The\nspectrum (after subtraction of other sky radiance components) appeared to have a stable structure. The main peak between 580\n85 orange bands and their variability was reported by Unterguggenberger et al. (2017), based on 3,662 spectra of the X-shooter\n80\nechelle spectrograph (Vernet et al., 2011) of the Very Large Telescope at Cerro Paranal in Chile (24.6◦S, 70.4◦W). Clear\nseasonal variations similar to those of the Na nightglow, which were analysed in the same study, were found. These variations\ncould be characterised by a combination of an annual and a semiannual oscillation (AO and SAO) with relative amplitudes\nof 17 and 27% and maxima in June/July and April/October, respectively. Strong nocturnal trends were not observed. The\nspectrum (after subtraction of other sky radiance components) appeared to have a stable structure. The main peak between 580\n85 orange bands and their variability was reported by Unterguggenberger et al. (2017), based on 3,662 spectra of the X-shooter\n80\nechelle spectrograph (Vernet et al., 2011) of the Very Large Telescope at Cerro Paranal in Chile (24.6◦S, 70.4◦W). Clear\nseasonal variations similar to those of the Na nightglow, which were analysed in the same study, were found. These variations\ncould be characterised by a combination of an annual and a semiannual oscillation (AO and SAO) with relative amplitudes\nof 17 and 27% and maxima in June/July and April/October, respectively. Strong nocturnal trends were not observed. The\nspectrum (after subtraction of other sky radiance components) appeared to have a stable structure. The main peak between 580\n85 3 3 https://doi.org/10.5194/egusphere-2023-2087\nPreprint. Discussion started: 28 September 2023\nc⃝Author(s) 2023. CC BY 4.0 License. and 610 nm with a mean intensity of 23.2 ± 1.1 R contributed 3.3 ± 0.8% to the total emission in the range between 500 and\n720 nm. and 610 nm with a mean intensity of 23.2 ± 1.1 R contributed 3.3 ± 0.8% to the total emission in the range between 500 and\n720 nm. (2015) also estimated that the\n125\npresence of weak OH emission lines in the window used by Maihara et al. (1993) would require a reduction of the radiance by\n65% resulting in about 11 R nm−1. range from 1,519 to 1,761 nm avoiding regions affected by strong emission lines. Oliva et al. (2015) also estimated that the\n125\npresence of weak OH emission lines in the window used by Maihara et al. (1993) would require a reduction of the radiance by\n65% resulting in about 11 R nm−1. The high uncertainties of the nightglow continuum in the near-IR made it difficult to find explanations for the origin of\nthe emission. The apparent rise of the continuum beyond 700 nm led to the assumption that this could be caused by another\nNO-related reaction (Gadsden and Marovich, 1973). As derived by Clough and Thrush (1967) in the laboratory, the reaction\n130 The high uncertainties of the nightglow continuum in the near-IR made it difficult to find explanations for the origin of\nthe emission. The apparent rise of the continuum beyond 700 nm led to the assumption that this could be caused by another\nNO-related reaction (Gadsden and Marovich, 1973). As derived by Clough and Thrush (1967) in the laboratory, the reaction\n130 The high uncertainties of the nightglow continuum in the near-IR made it difficult to find explanations for the origin of\nthe emission. The apparent rise of the continuum beyond 700 nm led to the assumption that this could be caused by another NO-related reaction (Gadsden and Marovich, 1973). As derived by Clough and Thrush (1967) in the laboratory, the reaction\n130\nNO + O3 →NO2 + O2 + hν\n(R4) NO + O3 →NO2 + O2 + hν\n(R4) (R4) would be able to produce a broad continuum with a maximum near 1,200 nm. Later, Kenner and Ogryzlo (1984) also investi-\ngated the reaction would be able to produce a broad continuum with a maximum near 1,200 nm. Later, Kenner and Ogryzlo (1984) also investi-\ngated the reaction NO + O∗\n3 →NO2 + O2 + hν (R5) involving excited O3 with an emission maximum near 800 nm. However, the increasing number of continuum measurements\n135\ndid not support a large contribution from these reactions. Finally, calculations by Semenov et al. Unterguggenberger et al. (2017) did not see clear contributions of the reaction (2013) with the\n115\nAnglo-Australian Telescope in Australia (31◦S) between 1,516 and 1,522 nm. For their sole continuum window, they obtained\n30 ± 6 R nm−1 based on 45 spectra with a resolving power of 2,400, where strong OH lines were suppressed by means of\nfibre Bragg gratings (Ellis et al., 2012). The data of the covered five nights also indicated a faster decrease of the continuum at\nthe beginning of the night than in the case of the OH lines. Maihara et al. (1993) already measured the range between 1,661 4 4 (2014b) suggested that a\nradiance maximum of about 15 R nm−1 for Reaction R1 would lead to emission maxima of about 5.4 R nm−1 for Reaction R4\nand about 0.3 R nm−1 for Reaction R5, i.e. the reactions of NO with O3 should only be minor contributions in the near-\nIR especially at low latitudes, where the NO2 air afterglow near 600 nm tends to be much weaker than given by Semenov involving excited O3 with an emission maximum near 800 nm. However, the increasing number of continuum measurements\n135\ndid not support a large contribution from these reactions. Finally, calculations by Semenov et al. (2014b) suggested that a\nradiance maximum of about 15 R nm−1 for Reaction R1 would lead to emission maxima of about 5.4 R nm−1 for Reaction R4\nand about 0.3 R nm−1 for Reaction R5, i.e. the reactions of NO with O3 should only be minor contributions in the near-\nIR especially at low latitudes, where the NO2 air afterglow near 600 nm tends to be much weaker than given by Semenov et al. (2014b). An alternative proposal for a source of continuum emission was provided by Bates (1993), who suggested\n140\nmetastable oxygen molecules that collide with ambient gas molecules and then form complexes that dissociate by allowed\nradiative transitions. However, there were no follow-up studies of this scenario. Concerning laboratory measurements, Bass\nand Benedict (1952) and West and Broida (1975) showed that FeO does not only produce the orange bands. Probably involving\ndifferent electronic transitions, pseudo-contiuum emission between 400 and 1,400 nm could be measured. It remains uncertain\nhow strong these additional bands could be under atmospheric conditions\n145 et al. (2014b). An alternative proposal for a source of continuum emission was provided by Bates (1993), who suggested\n140\nmetastable oxygen molecules that collide with ambient gas molecules and then form complexes that dissociate by allowed\nradiative transitions. However, there were no follow-up studies of this scenario. Concerning laboratory measurements, Bass\nand Benedict (1952) and West and Broida (1975) showed that FeO does not only produce the orange bands. Probably involving\ndifferent electronic transitions, pseudo-contiuum emission between 400 and 1,400 nm could be measured. It remains uncertain how strong these additional bands could be under atmospheric conditions. https://doi.org/10.5194/egusphere-2023-2087\nPreprint. Discussion started: 28 September 2023\nc⃝Author(s) 2023. CC BY 4.0 License. and 1,669 nm with a resolving power of 1,900 in one night at Mauna Kea (20◦N) and found 32 ± 8 R nm−1. A similar flux of\n120\n36±11 R nm−1 was obtained by Sullivan and Simcoe (2012) between 1,662 and 1,663 nm based on the median of 105 spectra\ntaken with a resolving power of 6,000 at Las Campanas in Chile (29◦S). However, the Cerro Paranal sky model provides here\nonly about 13 R nm−1. Moreover, 2 h of observations with the GIANO spectrograph at the island La Palma (Spain, 29◦N)\nwith the very high resolving power of 32,000 (Oliva et al., 2015) revealed a mean continuum level of about 16 R nm−1 in the and 1,669 nm with a resolving power of 1,900 in one night at Mauna Kea (20◦N) and found 32 ± 8 R nm−1. A similar flux of\n120\n36±11 R nm−1 was obtained by Sullivan and Simcoe (2012) between 1,662 and 1,663 nm based on the median of 105 spectra\ntaken with a resolving power of 6,000 at Las Campanas in Chile (29◦S). However, the Cerro Paranal sky model provides here\nonly about 13 R nm−1. Moreover, 2 h of observations with the GIANO spectrograph at the island La Palma (Spain, 29◦N)\nwith the very high resolving power of 32,000 (Oliva et al., 2015) revealed a mean continuum level of about 16 R nm−1 in the and 1,669 nm with a resolving power of 1,900 in one night at Mauna Kea (20◦N) and found 32 ± 8 R nm−1. A similar flux of\n120\n36±11 R nm−1 was obtained by Sullivan and Simcoe (2012) between 1,662 and 1,663 nm based on the median of 105 spectra\ntaken with a resolving power of 6,000 at Las Campanas in Chile (29◦S). However, the Cerro Paranal sky model provides here\nonly about 13 R nm−1. Moreover, 2 h of observations with the GIANO spectrograph at the island La Palma (Spain, 29◦N)\nwith the very high resolving power of 32,000 (Oliva et al., 2015) revealed a mean continuum level of about 16 R nm−1 in the y\ng\ng p\n(\n)\nrange from 1,519 to 1,761 nm avoiding regions affected by strong emission lines. Oliva et al. https://doi.org/10.5194/egusphere-2023-2087\nPreprint. Discussion started: 28 September 2023\nc⃝Author(s) 2023. CC BY 4.0 License. into different components, the seasonal and nocturnal variations of these components, the impact of the solar activity cycle,\nand an estimate of the effective emission heights. As this analysis revealed that it is necessary to introduce new nightglow\nemission processes, we also explored several possible mechanisms for these emissions by carrying out simulations with the\nWhole Atmosphere Community Climate Model (WACCM) (Sect. 4). Finally, we draw our conclusions in Sect. 5. 2.1\nData set For the UVB and VIS arms, more data of these stars and additional spectra of Feige 110, LTT 7987, and GD 71\n(Moehler et al., 2014) could be used due to the higher flux at shorter wavelengths and the weaker disturbing nightglow emission. the comparison of X-shooter-based spectra of spectrophotometric standard stars and the theoretically expected spectral energy\n170\ndistributions (Moehler et al., 2014). As discussed by Noll et al. (2022a), the NIR-arm spectra were calibrated by means of 10\nmaster response curves derived from data of the stars LTT 3218 and EG 274, which have the highest fluxes in that wavelength\nregime. For the UVB and VIS arms, more data of these stars and additional spectra of Feige 110, LTT 7987, and GD 71\n(Moehler et al., 2014) could be used due to the higher flux at shorter wavelengths and the weaker disturbing nightglow emission. the comparison of X-shooter-based spectra of spectrophotometric standard stars and the theoretically expected spectral energy\n170\ndistributions (Moehler et al., 2014). As discussed by Noll et al. (2022a), the NIR-arm spectra were calibrated by means of 10\nmaster response curves derived from data of the stars LTT 3218 and EG 274, which have the highest fluxes in that wavelength\nregime. For the UVB and VIS arms, more data of these stars and additional spectra of Feige 110, LTT 7987, and GD 71\n(Moehler et al., 2014) could be used due to the higher flux at shorter wavelengths and the weaker disturbing nightglow emission. As this increased the sample from 679 to 1,794 spectra and improved the star-dependent time coverage, there were enough data\n175\nto produce a series of 40 master response curves with a valid period of 3 months on average. This allowed us to better correct\nthe variability of the response, which tends to increase towards shorter wavelengths due to the larger impact of dirt on the\nmirrors. In the UVB arm at 370 nm, the individual response curves show a relative standard deviation of about 9.1%, whereas\nthis percentage is only about 3.5% at 1,700 nm. From the flux-calibrated standard star spectra, we obtain a residual variability of 3.6 and 1.7% for the given UVB- and NIR-related wavelengths. Uncertainties of about 2 to 3% are typical for most of the\n180\nrelevant wavelength range. 145\nAs there is obviously a lack of knowledge of the structure of the unresolved nightglow emission and its variability (especially\nbeyond the visual range), we studied this topic by means of a large sample of well-calibrated X-shooter spectra similar to those\nused by Unterguggenberger et al. (2017) for FeO-related research, i.e. mostly in the wavelength range between 560 and 720 nm. For the current study, we considered a much wider wavelength range from about 300 to 1,800 nm. Moreover, the extended data how strong these additional bands could be under atmospheric conditions. 145\nAs there is obviously a lack of knowledge of the structure of the unresolved nightglow emission and its variability (especially\nbeyond the visual range), we studied this topic by means of a large sample of well-calibrated X-shooter spectra similar to those\nused by Unterguggenberger et al. (2017) for FeO-related research, i.e. mostly in the wavelength range between 560 and 720 nm. For the current study, we considered a much wider wavelength range from about 300 to 1,800 nm. Moreover, the extended data how strong these additional bands could be under atmospheric conditions. 145\nAs there is obviously a lack of knowledge of the structure of the unresolved nightglow emission and its variability (especially\nbeyond the visual range), we studied this topic by means of a large sample of well-calibrated X-shooter spectra similar to those\nused by Unterguggenberger et al. (2017) for FeO-related research, i.e. mostly in the wavelength range between 560 and 720 nm. For the current study, we considered a much wider wavelength range from about 300 to 1,800 nm. Moreover, the extended data set covers 10 instead of 3.5 years, which allowed us to perform a more detailed variability analysis. The data processing\n150\nwas also improved (cf. Noll et al., 2022a). We discuss the data set, basic data processing, and extraction of the nightglow\n(pseudo-)continuum in Sect. 2. In Sect. 3, we then describe the derivation of a mean continuum spectrum, its decomposition set covers 10 instead of 3.5 years, which allowed us to perform a more detailed variability analysis. The data processing\n150\nwas also improved (cf. Noll et al., 2022a). We discuss the data set, basic data processing, and extraction of the nightglow\n(pseudo-)continuum in Sect. 2. In Sect. 3, we then describe the derivation of a mean continuum spectrum, its decomposition 5 5 2.1\nData set The X-shooter spectrograph (Vernet et al., 2011) covers the wide wavelength range between 300 and 2,480 nm with a resolv-\ning power between 3,200 and 18,400 depending on the arm (UVB: 300 to 560 nm, VIS: 550 to 1,020 nm, or NIR: 1,020 to\n160 2,480 nm) and the variable width of the entrance slit with a fixed projected length of 11′′. For standard slits with widths of 1.0′′\n(UVB), 0.9′′ (VIS), and 0.9′′ (NIR), the current nominal resolving power amounts to about 5,400, 8,900, and 5,600, respec-\ntively. The entire X-shooter data archive of the European Southern Observatory from the start in October 2009 until September\n2019 (i.e. 10 years of data) was considered for this study. The NIR-arm data have already been used for investigations focusing 2,480 nm) and the variable width of the entrance slit with a fixed projected length of 11′′. For standard slits with widths of 1.0′′\n(UVB), 0.9′′ (VIS), and 0.9′′ (NIR), the current nominal resolving power amounts to about 5,400, 8,900, and 5,600, respec-\ntively. The entire X-shooter data archive of the European Southern Observatory from the start in October 2009 until September\n2019 (i.e. 10 years of data) was considered for this study. The NIR-arm data have already been used for investigations focusing on OH emission lines (Noll et al., 2022a, 2023b). As described in these studies, the basic data processing was performed\n165\nwith version v2.6.8 of the official reduction pipeline (Modigliani et al., 2010) and pre-processed calibration data. The resulting\ntwo-dimensional (2D) wavelength-calibrated sky spectra were then reduced to one dimension (1D) by averaging along the slit\ndirection and adding possible sky remnants measured in the 2D astronomical object spectrum extracted by the pipeline. The flux calibration was performed by means of master response curves for different time periods, which we derived from l\np\ny\np\np\n,\nthe comparison of X-shooter-based spectra of spectrophotometric standard stars and the theoretically expected spectral energy\n170\ndistributions (Moehler et al., 2014). As discussed by Noll et al. (2022a), the NIR-arm spectra were calibrated by means of 10\nmaster response curves derived from data of the stars LTT 3218 and EG 274, which have the highest fluxes in that wavelength\nregime. https://doi.org/10.5194/egusphere-2023-2087\nPreprint. Discussion started: 28 September 2023\nc⃝Author(s) 2023. CC BY 4.0 License. Excluding very short exposures with less than 10 s and spectra with very wide slits, which are mainly used for the spec-\ntrophotometric standard stars, the final sample comprises about 56,000 UVB, 64,000 VIS, and 91,000 NIR spectra. Although\nthe three arms are usually operated in parallel, the numbers differ due to arm-dependent splitting of observations. Failed pro-\ncessing is another, albeit minor, issue. The exposure times can also be different. In general, the sample is highly inhomogeneous due to different instrumental set-ups, a wide range of exposure times up to 150 min, and different possible residuals of the re-\n90\nmoved astronomical targets. Hence, the selection of a high-quality sample for a specific research goal needs to be done very\ncarefully. 2.2\nExtraction of nightglow continuum For the measurement of the OH line intensities in the NIR arm by Noll et al. (2022a, 2023b), lines and underlying continuum\nwere separated by using percentile filters. For the present investigation of the nightglow continuum, we applied the same\n195\napproach to the other two arms (Fig. 1). As the density and strength of emission lines depends on the wavelength, we used\ndifferent combinations of percentile and window width in order to optimise the separation. Concerning the percentile, we\napplied a median filter in the UVB arm, a first quintile filter in the NIR arm, and stepwise transition between both limiting\npercentiles in the VIS arm. The window width for the major part of the spectral range was 0.008 times the central wavelength For the measurement of the OH line intensities in the NIR arm by Noll et al. (2022a, 2023b), lines and underlying continuum\nwere separated by using percentile filters. For the present investigation of the nightglow continuum, we applied the same\n195\napproach to the other two arms (Fig. 1). As the density and strength of emission lines depends on the wavelength, we used\ndifferent combinations of percentile and window width in order to optimise the separation. Concerning the percentile, we\napplied a median filter in the UVB arm, a first quintile filter in the NIR arm, and stepwise transition between both limiting\npercentiles in the VIS arm. The window width for the major part of the spectral range was 0.008 times the central wavelength (see also Noll et al., 2022a). This width was further modified primarily depending on the line density. In particular, extended\n200\nrelative widths were applied to wavelengths affected by emission bands of O2 (e.g., Noll et al., 2014, 2016) at 865 nm (0.02\ninstead of 0.008), 1,270 nm (0.04), and 1,580 nm (0.02). Nevertheless, remnants of these bands could not be fully avoided (see\nSect. 3.1). Compared to the measurement of lines, the continuum separation was performed after two preparatory steps. First, scattered moonlight, zodiacal light, scattered starlight, and thermal emission of the telescope were calculated using the Cerro Paranal\n205\nsky model (Noll et al., 2012; Jones et al., 2013) and subtracted from the X-shooter spectra (Fig. 1). Note that this is just a\nrough correction with relatively high systematic uncertainties, especially in the UVB arm when the Moon is up. 2.1\nData set A notable exception are wavelengths around 560 nm, which are especially affected by the dichroic\nbeam splitting (Vernet et al., 2011). There, the flux variations amount to about 4 to 5%. Finally, the absolute fluxes could show\nwavelength-dependent constant systematic offsets of a few per cent as a comparison of the results for the different standard\nstars indicate. We removed the differences by taking LTT 3218 as a reference. Hence, the absolute flux calibration depends on\nthe quality of the theoretical spectral energy distribution of this star (Moehler et al 2014)\n185 the quality of the theoretical spectral energy distribution of this star (Moehler et al., 2014). 185 6 2.2\nExtraction of nightglow continuum nightglow\nSeparated continuum\n600\n650\n700\n750\n800\n850\n900\n950\nWavelength [nm]\n0\n20\n40\n60\nRadiance [R nm\n1]\n(b)\n1050\n1100\n1150\n1200\n1250\n1300\n1350\nWavelength [nm]\n0\n50\n100\nRadiance [R nm\n1]\n(c)\n1400\n1450\n1500\n1550\n1600\n1650\n1700\n1750\nWavelength [nm]\n0\n200\n400\nRadiance [R nm\n1]\n(d)\nFigure 1. Extraction of nightglow continuum for an X-shooter example spectrum with an exposure time of 15 min and standard width of\nthe entrance slit for all three arms, i.e. UVB (a), VIS (b), and NIR (c and d). Wavelengths at the margins of the arm-related spectra and\nbeyond 1,790 nm, which are characterised by continuum data of low quality, are not shown. The original sky spectrum is marked by the cyan\n(but mostly covered by the red) curve with the green curve as a base line. The latter indicates the modelled contributions by zodiacal light,\nscattered starlight, and thermal emission of the telescope and instrument. The Moon was below the horizon. Hence, after the subtraction\nof these components, the cyan spectrum (limited by the dotted zero line) marks the nightglow emission. The red spectrum results from\na continuum-optimised correction of the atmospheric extinction, i.e. absorption and scattering. The largest changes compared to the cyan\ncurve are therefore related to wavelength ranges with strong absorption bands. Finally, the black solid curve shows the resulting nightglow\ncontinuum based on the application of percentile filters, where the percentile and the width depended on the wavelength range. 350\n400\n450\n500\n550\nWavelength [nm]\n0\n10\n20\nRadiance [R nm\n1]\nX-shooter, 2011-05-29, 00:27-00:42 LT\n(a)\nSubtracted model\nNightglow spectrum\nExtinction-corr. nightglow\nSeparated continuum\n0\n20\n40\n60\nRadiance [R nm\n1]\n(b) Subtracted model\nNightglow spectrum\nExtinction-corr. nightglow\nSeparated continuum 350\n400\n450\n500\n550\nWavelength [nm]\n0\n10\n20\nRadiance [R nm\n1]\nX-shooter, 2011-05-29, 00:27-00:42 LT\n(a)\nSubtracted model\nNightglow spectrum\nExtinction-corr. 2.2\nExtraction of nightglow continuum On the other\nhand, the sky radiance components related to direct or scattered light of sources from outside the atmosphere are relatively\nweak in the NIR arm. In particular, around 1,500 nm the nightglow clearly dominates. However, the situation deteriorates beyond 1,700 nm, where the non-zero emissivity of the telescope and instrumental optical components leads to a rising thermal\n210\ncontinuum depending on the ambient temperature. The second preparatory step was the correction of the atmospheric extinction\nby scattering and molecular absorption. The former was performed by means of the recipes given by Noll et al. (2012), which\nconsider the change of the reference Rayleigh and Mie scattering from the sky model depending on the wavelength and zenith\nangle. This correction is mostly relevant for the UVB arm, where flux changes by several per cent are frequent, whereas the effect is negligible in the NIR arm. Note that the nightglow brightness even tends to increase for spectra taken close to the\n215\nzenith due to Rayleigh scattering. Molecular absorption especially by water vapour but also by O3, O2, CO2, and CH4 reduces\nthe detected radiance. Here, we also used the sky model for a correction. The continuum transmission curve was calculated\nfor the given zenith distance, given amount of precipitable water vapour (PWV), and otherwise standard conditions at Cerro\nParanal. For PWV values, we used the results from Noll et al. (2022a) based on intensity ratios of OH lines in the NIR arm effect is negligible in the NIR arm. Note that the nightglow brightness even tends to increase for spectra taken close to the\n215\nzenith due to Rayleigh scattering. Molecular absorption especially by water vapour but also by O3, O2, CO2, and CH4 reduces\nthe detected radiance. Here, we also used the sky model for a correction. The continuum transmission curve was calculated\nfor the given zenith distance, given amount of precipitable water vapour (PWV), and otherwise standard conditions at Cerro\nParanal. For PWV values, we used the results from Noll et al. (2022a) based on intensity ratios of OH lines in the NIR arm 7 7 https://doi.org/10.5194/egusphere-2023-2087\nPreprint. Discussion started: 28 September 2023\nc⃝Author(s) 2023. CC BY 4.0 License. 350\n400\n450\n500\n550\nWavelength [nm]\n0\n10\n20\nRadiance [R nm\n1]\nX-shooter, 2011-05-29, 00:27-00:42 LT\n(a)\nSubtracted model\nNightglow spectrum\nExtinction-corr. The validity of the correction is supported by the consistent increase of the\ncontinuum flux with increasing zenith angle in the whole wavelength regime for the optimised sample described in Sect. 3.1. After the subtraction of the line emission, the continuum spectra were corrected for the increase of the emission with\nincreasing zenith angle due to a longer geometric path through the emission layer. This van Rhijn effect (van Rhijn, 1921) was After the subtraction of the line emission, the continuum spectra were corrected for the increase of the emission with\nincreasing zenith angle due to a longer geometric path through the emission layer. This van Rhijn effect (van Rhijn, 1921) was increasing zenith angle due to a longer geometric path through the emission layer. This van Rhijn effect (van Rhijn, 1921) was\ncalculated assuming that the origin of the extracted continuum was in the mesopause region. The results only weakly depend\n230\non the reference height, which we set to 90 km. The validity of the correction is supported by the consistent increase of the\ncontinuum flux with increasing zenith angle in the whole wavelength regime for the optimised sample described in Sect. 3.1. calculated assuming that the origin of the extracted continuum was in the mesopause region. The results only weakly depend\n230\non the reference height, which we set to 90 km. The validity of the correction is supported by the consistent increase of the\ncontinuum flux with increasing zenith angle in the whole wavelength regime for the optimised sample described in Sect. 3.1. 2.2\nExtraction of nightglow continuum nightglow\nSeparated continuum\n600\n650\n700\n750\n800\n850\n900\n950\nWavelength [nm]\n0\n20\n40\n60\nRadiance [R nm\n1]\n(b)\n1050\n1100\n1150\n1200\n1250\n1300\n1350\nWavelength [nm]\n0\n50\n100\nRadiance [R nm\n1]\n(c)\n1400\n1450\n1500\n1550\n1600\n1650\n1700\n1750\nWavelength [nm]\n0\n200\n400\nRadiance [R nm\n1]\n(d) 600\n650\n700\n750\n800\n850\n900\n950\nWavelength [nm]\n0\nRad\n1050\n1100\n1150\n1200\n1250\n1300\n1350\nWavelength [nm]\n0\n50\n100\nRadiance [R nm\n1]\n(c)\n1400\n1450\n1500\n1550\n1600\n1650\n1700\n1750\nWavelength [nm]\n0\n200\n400\nRadiance [R nm\n1]\n(d) Figure 1. Extraction of nightglow continuum for an X-shooter example spectrum with an exposure time of 15 min and standard width of\nthe entrance slit for all three arms, i.e. UVB (a), VIS (b), and NIR (c and d). Wavelengths at the margins of the arm-related spectra and\nbeyond 1,790 nm, which are characterised by continuum data of low quality, are not shown. The original sky spectrum is marked by the cyan\n(but mostly covered by the red) curve with the green curve as a base line. The latter indicates the modelled contributions by zodiacal light,\nscattered starlight, and thermal emission of the telescope and instrument. The Moon was below the horizon. Hence, after the subtraction\nof these components, the cyan spectrum (limited by the dotted zero line) marks the nightglow emission. The red spectrum results from\na continuum-optimised correction of the atmospheric extinction, i.e. absorption and scattering. The largest changes compared to the cyan\ncurve are therefore related to wavelength ranges with strong absorption bands. Finally, the black solid curve shows the resulting nightglow\ncontinuum based on the application of percentile filters, where the percentile and the width depended on the wavelength range. 8 https://doi.org/10.5194/egusphere-2023-2087\nPreprint. Discussion started: 28 September 2023\nc⃝Author(s) 2023. CC BY 4.0 License. with very different absorption fractions. The applied relations were previously calibrated by means of local data from a Low\n220\nHumidity And Temperature PROfiler (L-HATPRO) microwave radiometer (Kerber et al., 2012). Note that the simple division\nof a transmission curve does not provide correct results for emission lines as their natural shape is not resolved. However, as\nwe are only interested in the continuum, we can neglect this issue here. As long as the extinction is relatively small, the results\nof the correction are reasonable. Nevertheless, nearly opaque wavelength regions, e.g. around 1,400 nm due to water vapour with very different absorption fractions. The applied relations were previously calibrated by means of local data from a Low\n220\nHumidity And Temperature PROfiler (L-HATPRO) microwave radiometer (Kerber et al., 2012). Note that the simple division\nof a transmission curve does not provide correct results for emission lines as their natural shape is not resolved. However, as\nwe are only interested in the continuum, we can neglect this issue here. As long as the extinction is relatively small, the results\nof the correction are reasonable. Nevertheless, nearly opaque wavelength regions, e.g. around 1,400 nm due to water vapour (Fig. 1), cannot be handled in this way. Even if the extinction was exactly known, small uncertainties in the flux calibration\n225\nand the modelled sky radiance components would make a realistic correction impossible. Hence, the problematic wavelength\nregions had to be excluded from the analysis. (Fig. 1), cannot be handled in this way. Even if the extinction was exactly known, small uncertainties in the flux calibration\n225\nand the modelled sky radiance components would make a realistic correction impossible. Hence, the problematic wavelength\nregions had to be excluded from the analysis. After the subtraction of the line emission, the continuum spectra were corrected for the increase of the emission with\nincreasing zenith angle due to a longer geometric path through the emission layer. This van Rhijn effect (van Rhijn, 1921) was\ncalculated assuming that the origin of the extracted continuum was in the mesopause region. The results only weakly depend\n230\non the reference height, which we set to 90 km. 3.1\nThe mean continuum For the derivation of the mean nightglow continuum and the variability of the continuum, we only selected the most reliable\n235\nspectra. As a basic requirement, data products of all three arms with similar temporal coverage had to be available. In the\ncase of arm-dependent differences in the number of exposures (e.g., by shorter exposure times in the NIR arm than in the\nother arms), the related spectra were averaged, weighted by the exposure time. The most important selection criterion was\nthe minimum exposure time, which was set to 10 min after several tests. The same cut was applied to the VIS-arm sample studied by Unterguggenberger et al. (2017). This criterion ensures that the signal-to-noise ratio is high. However, the most\n240\nimportant effect is the reduction of continuum contamination by bright astronomical sources, which tend to be observed with\nshort exposure times. In order to keep the non-nightglow sky radiance (and the uncertainties of its correction) low, observations\nwith the Moon above the horizon and an illumination of more than 50% were excluded. In the end, these criteria led to 12,723\ncombined spectra, which constitutes a substantial decrease compared to the full sample. In a second selection procedure, various features in the continuum probably belonging to the nightglow continuum, residuals of nightglow lines, or residuals\n245\nof astronomical objects (e.g. the Hα line), and the remaining underlying continuum were measured to identify spectra with\nsuspected artefactual contamination (Fig. 2). The resulting selection limits (e.g. non-negative continuum fluxes), which were\nvalidated by visual inspection of spectra with values close to the limits, led to a sample of 10,850 spectra. In a third step, the\nselection was further refined by the search for abrupt changes in the times series of the continuum flux due to the change of the astronomical target, which suggests a residual contamination. Also validated by visual inspection, this procedure resulted in a\n250\nfinal sample of 10,633 combined spectra. 9 400\n600\n800\n1000\n1200\n1400\n1600\n1800\nWavelength [nm]\n0\n20\n40\n60\n80\nRadiance [R nm\n1]\nMean X-shooter-based nightglow continuum\nMean continuum\nFeature at 595 nm indicating FeO\nFeature at 1,510 nm indicating X\nOther continuum features\nRanges for quality checks\nCerro Paranal sky model (Noll et al., 2012)\nFigure 2. Mean nightglow continuum spectrum at Cerro Paranal from 10,633 combined X-shooter spectra. Wavelength ranges with system-\natic issues were not considered. 3.1\nThe mean continuum in the UVB arm), various bands related to the electronic upper states c, A′, and A of O2 (e.g., Slanger\n5\nand Copeland, 2003; Cosby et al., 2006) are visible. As the bands are only partly resolved in the X-shooter spectra, the major\npart of the emission appears to be present as continuum. The mean of this data set is shown in Fig. 2. The spectrum has gaps in wavelength ranges at the margins of the arms\n(due to high systematic uncertainties) and strong atmospheric absorption (essentially by water vapour). The latter explains the\nspectral upper limit at 1,780 nm, which also avoids wavelengths with strong thermal emission of the telescope (Fig. 1). At spectral upper limit at 1,780 nm, which also avoids wavelengths with strong thermal emission of the telescope (Fig. 1). At\nshort wavelengths (i.e. in the UVB arm), various bands related to the electronic upper states c, A′, and A of O2 (e.g., Slanger\n255\nand Copeland, 2003; Cosby et al., 2006) are visible. As the bands are only partly resolved in the X-shooter spectra, the major\npart of the emission appears to be present as continuum. 255 short wavelengths (i.e. in the UVB arm), various bands related to the electronic upper states c, A′, and A of O2 (e.g., Slanger\n255\nand Copeland, 2003; Cosby et al., 2006) are visible. As the bands are only partly resolved in the X-shooter spectra, the major\npart of the emission appears to be present as continuum. The pronounced step in the continuum at about 555 nm and the peak at about 595 nm indicates the presence of emission\nfrom the FeO orange bands (West and Broida, 1975; Jenniskens et al., 2000; Burgard et al., 2006; Evans et al., 2010; Saran\net al., 2011; Gattinger et al., 2011a; Unterguggenberger et al., 2017). 3.1\nThe mean continuum The plot also shows the wavelength limits for different continuum features and their underlying continua\nthat were used for the sample selection and the scientific analysis. The features centred on 595 nm (red solid line) and 1,510 nm (blue solid\nline) are the main structures for the latter. Other reliable continuum features (or alternative definitions of their extent) are marked by green\ndashed lines. The ranges indicated by yellow dashed lines were only used for quality checks (including the detection of the contamination\nby astronomical objects). They do not mark real nightglow features. For a comparison, the open circles show the mean residual continuum\nof the Cerro Paranal sky model (Noll et al., 2012). 400\n600\n800\n1000\n1200\n1400\n1600\n1800\nWavelength [nm]\n0\n20\n40\n60\n80\nRadiance [R nm\n1]\nMean X-shooter-based nightglow continuum\nMean continuum\nFeature at 595 nm indicating FeO\nFeature at 1,510 nm indicating X\nOther continuum features\nRanges for quality checks\nCerro Paranal sky model (Noll et al., 2012) Mean X-shooter-based nightglow continuum Radiance [R nm\n1] Figure 2. Mean nightglow continuum spectrum at Cerro Paranal from 10,633 combined X-shooter spectra. Wavelength ranges with system-\natic issues were not considered. The plot also shows the wavelength limits for different continuum features and their underlying continua\nthat were used for the sample selection and the scientific analysis. The features centred on 595 nm (red solid line) and 1,510 nm (blue solid\nline) are the main structures for the latter. Other reliable continuum features (or alternative definitions of their extent) are marked by green\ndashed lines. The ranges indicated by yellow dashed lines were only used for quality checks (including the detection of the contamination\nby astronomical objects). They do not mark real nightglow features. For a comparison, the open circles show the mean residual continuum\nof the Cerro Paranal sky model (Noll et al., 2012). The mean of this data set is shown in Fig. 2. The spectrum has gaps in wavelength ranges at the margins of the arms\n(due to high systematic uncertainties) and strong atmospheric absorption (essentially by water vapour). The latter explains the\nspectral upper limit at 1,780 nm, which also avoids wavelengths with strong thermal emission of the telescope (Fig. 1). At\nshort wavelengths (i.e. 3.1\nThe mean continuum The location of the step does not support significant\n260\ncontributions by NiO (Burgard et al 2006; Evans et al 2011; Gattinger et al 2011b) at least from the bluest systems (B-X The pronounced step in the continuum at about 555 nm and the peak at about 595 nm indicates the presence of emission\nfrom the FeO orange bands (West and Broida, 1975; Jenniskens et al., 2000; Burgard et al., 2006; Evans et al., 2010; Saran The pronounced step in the continuum at about 555 nm and the peak at about 595 nm indicates the presence of emission\nfrom the FeO orange bands (West and Broida, 1975; Jenniskens et al., 2000; Burgard et al., 2006; Evans et al., 2010; Saran\net al., 2011; Gattinger et al., 2011a; Unterguggenberger et al., 2017). The location of the step does not support significant\n260\ncontributions by NiO (Burgard et al., 2006; Evans et al., 2011; Gattinger et al., 2011b), at least from the bluest systems (B-X\nand C-X), which would already lead to a rise of the flux below 500 nm. The shape of the continuum in this wavelength range et al., 2011; Gattinger et al., 2011a; Unterguggenberger et al., 2017). The location of the step does not support significant\n260\ncontributions by NiO (Burgard et al., 2006; Evans et al., 2011; Gattinger et al., 2011b), at least from the bluest systems (B-X\nand C-X), which would already lead to a rise of the flux below 500 nm. The shape of the continuum in this wavelength range 10 https://doi.org/10.5194/egusphere-2023-2087\nPreprint. Discussion started: 28 September 2023\nc⃝Author(s) 2023. CC BY 4.0 License. also excludes a significant contribution of NO2 air afterglow (Becker et al., 1972; Gattinger et al., 2009, 2010; Semenov et al.,\n2014a), which is not unexpected as it is usually only bright at high latitudes (see also Sect. 1). Longwards of the peak at 2014a), which is not unexpected as it is usually only bright at high latitudes (see also Sect. 1). Longwards of the peak at\n595 nm, the continuum shows only minor features in the VIS arm with a shallow local maximum at about 800 nm. There,\n265\nthe flux level is not higher than around the FeO main peak and lower than all published continuum measurements in this\nwavelength range (Sect. 1). At 857 nm, where Noxon (1978) obtained a relatively low value of about 7 R nm−1, our mean flux\nis about 5.0 R nm−1. For a comparison, Fig. 2 also shows the mean continuum from the Cerro Paranal sky model of Noll et al. (2012). While up to 770 nm the model continuum is usually only slightly brighter than our X-shooter-based measurements, the\n1i 595 nm, the continuum shows only minor features in the VIS arm with a shallow local maximum at about 800 nm. There,\n265\nthe flux level is not higher than around the FeO main peak and lower than all published continuum measurements in this\nwavelength range (Sect. 1). At 857 nm, where Noxon (1978) obtained a relatively low value of about 7 R nm−1, our mean flux\nis about 5.0 R nm−1. For a comparison, Fig. 2 also shows the mean continuum from the Cerro Paranal sky model of Noll et al. (2012). While up to 770 nm the model continuum is usually only slightly brighter than our X-shooter-based measurements, the subsequent three data points are above 10 R nm−1, which was most probably caused by the use of spectra without sufficient\n270\nresolving power. In the NIR arm, our mean continuum is highly structured. In part, these features are related to residuals of blends of strong\nOH and O2 nightglow emission lines. In particular, remnants of the O2 bands at 1,270 and 1,580 nm related to the transi-\ntions (a-X)(0-0) and (a-X)(0-1) can be identified (e.g., Rousselot et al., 2000; Noll et al., 2014, 2016). Nevertheless, these i\nfeatures only include a very small fraction of the total emissions, which were separated with particularly wide filter windows\n275\nbecause of the relatively high line density (see Sect. 2.2). The feature at about 1,080 nm is probably mainly related to the weak\nO2(a-X)(1-0) band (HITRAN database; Gordon et al., 2022), although the narrow maximum appears to be affected by OH\nresiduals. The most striking continuum feature is certainly the high and narrow peak at about 1,510 nm. It is not related to\nresiduals of strong lines. Hence, it is probably composed of a high number of weak lines, which cannot be resolved with the\nspectral resolving power of X-shooter. A feature with a similar origin appears to be the peak at about 1,620 nm. 280 features only include a very small fraction of the total emissions, which were separated with particularly wide filter windows\n275\nbecause of the relatively high line density (see Sect. 2.2). The feature at about 1,080 nm is probably mainly related to the weak\nO2(a-X)(1-0) band (HITRAN database; Gordon et al., 2022), although the narrow maximum appears to be affected by OH\nresiduals. The most striking continuum feature is certainly the high and narrow peak at about 1,510 nm. It is not related to\nresiduals of strong lines. Hence, it is probably composed of a high number of weak lines, which cannot be resolved with the spectral resolving power of X-shooter. A feature with a similar origin appears to be the peak at about 1,620 nm. 280\nBoth features do not appear to have been discussed previously in the airglow literature. Nevertheless, they are already\nindicated in the coarse residual continuum component of the Cerro Paranal sky model (Noll et al., 2012), which was also\nderived from X-shooter spectra (see Sect. 1). Despite the high uncertainties in the model due to premature processing of only a\nsmall number of spectra, the majority of the measurement points are relatively close to our mean continuum. Notable exceptions spectral resolving power of X-shooter. A feature with a similar origin appears to be the peak at about 1,620 nm. 280\nBoth features do not appear to have been discussed previously in the airglow literature. Nevertheless, they are already\nindicated in the coarse residual continuum component of the Cerro Paranal sky model (Noll et al., 2012), which was also\nderived from X-shooter spectra (see Sect. 1). https://doi.org/10.5194/egusphere-2023-2087\nPreprint. Discussion started: 28 September 2023\nc⃝Author(s) 2023. CC BY 4.0 License. 3.2\nContinuum decomposition Most of the nightglow continuum emission in Fig. 2 does not exhibit clear features. In order to better understand this emission\nand its relation to the identified features, we performed a decomposition of the continuum in different components by means of\nthe wavelength-dependent variability pattern derived from the 10,633 selected spectra. Our approach was to use non-negative\n300\nmatrix factorisation (NMF; e.g., Lee and Seung, 1999), which approximately decomposes an m × n matrix without negative\nentries into two matrices with sizes m × L and L × n also without negative elements. For this analysis, m, n, and L are the\nnumber of wavelength positions, number of spectra, and number of continuum components, respectively. As we sampled the\ncontinuum spectrum with a resolution of 0.5 nm and only included the ranges indicated in Fig. 2, m was 2,479. For L, a reasonable minimum is 4 since the features correlated with the FeO emission in the VIS arm, the unidentified features in the\n305\nNIR arm, the O2 features in the UVB arm, and the residuals related to the O2(a-X) bands in the NIR arm should be treated\nseparately. This definition of basic variability classes is supported by a check of the correlations between the variability of the\ndifferent measured features and continuum windows. In the following, we call these classes FeO(VIS), X(NIR), O2(UVB), and\nO2(NIR). The names refer to the radiating molecule and location (in terms of the X-shooter arm) of the main features of each reasonable minimum is 4 since the features correlated with the FeO emission in the VIS arm, the unidentified features in the\n305\nNIR arm, the O2 features in the UVB arm, and the residuals related to the O2(a-X) bands in the NIR arm should be treated\nseparately. This definition of basic variability classes is supported by a check of the correlations between the variability of the\ndifferent measured features and continuum windows. In the following, we call these classes FeO(VIS), X(NIR), O2(UVB), and\nO2(NIR). The names refer to the radiating molecule and location (in terms of the X-shooter arm) of the main features of each class. It is not excluded that emission of other molecules with a similar variability pattern can contribute. For the application of\n310\nthe NMF, negative fluxes have to be avoided. Despite the high uncertainties in the model due to premature processing of only a\nsmall number of spectra, the majority of the measurement points are relatively close to our mean continuum. Notable exceptions in the NIR-arm range are the fluxes at 1,628 nm (54 R nm−1) and below 1,180 nm. Apart from possible problems with the\n285\nseparation of lines and continuum, the offsets in the latter range suggest systematic issues with the data processing. Data points\nin ranges that we excluded from our analysis should be treated with caution. In Australia, Trinh et al. (2013) coincidentally\nperformed their continuum measurement of 30 ± 6 R nm−1 near the emission peak between 1,516 to 1,522 nm. We find a\nhigher flux of about 50 R nm−1 for the same range. On the other hand, the mean continuum between 1,661 and 1,669 nm in in the NIR-arm range are the fluxes at 1,628 nm (54 R nm−1) and below 1,180 nm. Apart from possible problems with the\n285\nseparation of lines and continuum, the offsets in the latter range suggest systematic issues with the data processing. Data points\nin ranges that we excluded from our analysis should be treated with caution. In Australia, Trinh et al. (2013) coincidentally\nperformed their continuum measurement of 30 ± 6 R nm−1 near the emission peak between 1,516 to 1,522 nm. We find a\nhigher flux of about 50 R nm−1 for the same range. On the other hand, the mean continuum between 1,661 and 1,669 nm in Fig. 2 amounts to about 14 R nm−1, which is clearly lower than the measurements of Maihara et al. (1993) and Sullivan and\n290\nSimcoe (2012). However, it is slightly brighter than a radiance of about 11 R nm−1 proposed by Oliva et al. (2015) after the\ncorrection of the flux of Maihara et al. (1993) for the contamination by faint OH lines. Compared with the mean continuum flux\nof about 16 R nm−1 obtained by Oliva et al. (2015) between 1,519 to 1,761 nm with high resolving power, our corresponding\nflux of about 22 R nm−1 is also slightly higher. Apart from differences in the instrumental properties and the data processing, such discrepancies could also be explained by the different observing sites and observing periods. Oliva et al. (2015) only used\n295\n2 h of data taken at La Palma (29◦N). 11 3.2\nContinuum decomposition We tested different numbers and sizes of the windows. In the end, we used 335 to 359 nm,\n320\n586 to 603 nm, 1,260 to 1,297 nm, and 1,497 to 1,521 nm, which maximised the weight of the main features of the four\nvariability classes. For finding the best scaling factors, we defined a cost function that uses the relative contributions of the\ncomponent spectra to the corresponding feature windows as defined above. A simple arithmetic mean of the four fractions\nfavoured solutions with particular large contributions of the two O2-related components. However, the latter can be seen as the resulting component spectra. We tested different numbers and sizes of the windows. In the end, we used 335 to 359 nm,\n320\n586 to 603 nm, 1,260 to 1,297 nm, and 1,497 to 1,521 nm, which maximised the weight of the main features of the four\nvariability classes. For finding the best scaling factors, we defined a cost function that uses the relative contributions of the\ncomponent spectra to the corresponding feature windows as defined above. A simple arithmetic mean of the four fractions\nfavoured solutions with particular large contributions of the two O2-related components. However, the latter can be seen as the resulting component spectra. We tested different numbers and sizes of the windows. In the end, we used 335 to 359 nm,\n320\n586 to 603 nm, 1,260 to 1,297 nm, and 1,497 to 1,521 nm, which maximised the weight of the main features of the four\nvariability classes. For finding the best scaling factors, we defined a cost function that uses the relative contributions of the\ncomponent spectra to the corresponding feature windows as defined above. A simple arithmetic mean of the four fractions\nfavoured solutions with particular large contributions of the two O2-related components. However, the latter can be seen as contaminations of the FeO(VIS) and X(NIR) components, which are obviously the primary targets of an investigation of the\n325\nnightglow continuum. Hence, we added the fractions with different weights, finally choosing 0.33 for FeO(VIS) and X(NIR)\nand 0.17 for O2(UVB) and O2(NIR). Although this procedure is certainly somewhat arbitrary, this choice had relatively little\nimpact on the structure of the solution. It was only important for easily finding a satisfactory solution. Tests showed that the\ncomponent spectra are relatively similar in wide regions of the parameter space. 3.2\nContinuum decomposition Because of the thorough sample selection procedure described above, the number\nof affected data points was very small and negative values could therefore be replaced by zeros without a significant change\nof the mean spectrum. Only between 1,031 and 1,037 nm (the shortest considered wavelengths in the NIR arm), the mean flux\nincreased by more than 1%. For the derivation of the mean spectrum of each component, we multiplied each of the resulting L component spectra consisting of m data points with the mean of the n corresponding scaling factors. 315\nIn the case of an application of the NMF with L = 4, it turned out that the O2 component in the UVB arm was not separated\nfrom the FeO-related features (similar to L = 3). This failure was probably caused by the weakness of the O2 features compared\nto the other identified continuum structures. As a consequence, we increased the weight of wavelength regions where a crucial\nfeature was relatively strong by the multiplication of suitable factors before the NMF and the division of the same factors in component spectra consisting of m data points with the mean of the n corresponding scaling factors. 315\nIn the case of an application of the NMF with L = 4, it turned out that the O2 component in the UVB arm was not separated\nfrom the FeO-related features (similar to L = 3). This failure was probably caused by the weakness of the O2 features compared\nto the other identified continuum structures. As a consequence, we increased the weight of wavelength regions where a crucial\nfeature was relatively strong by the multiplication of suitable factors before the NMF and the division of the same factors in component spectra consisting of m data points with the mean of the n corresponding scaling factors. 315\nIn the case of an application of the NMF with L = 4, it turned out that the O2 component in the UVB arm was not separated\nfrom the FeO-related features (similar to L = 3). This failure was probably caused by the weakness of the O2 features compared\nto the other identified continuum structures. As a consequence, we increased the weight of wavelength regions where a crucial\nfeature was relatively strong by the multiplication of suitable factors before the NMF and the division of the same factors in the resulting component spectra. While FeO(VIS) dominates almost the entire VIS arm, X(NIR) is the strongest mean component in the NIR characterised by relatively high values (limited to a maximum of 200), although the ratios of the four factors can clearly differ. 340\nThe resulting mean continuum components based on refined simplex search are shown in Fig. 3a. The FeO(VIS) and X(NIR)\ncomponents contribute to the corresponding feature windows with 83.0% and 95.1%, respectively. Other reasonable solutions\ntend to show slightly lower percentages. The dominance of these two components extends to wavelengths far away from the\nmain features. While FeO(VIS) dominates almost the entire VIS arm, X(NIR) is the strongest mean component in the NIR arm. Similar contributions appear to be present at the red end of the VIS arm. Below 500 nm, O2(UVB) becomes important\n345\nwith a dominating contribution of 60.5% in the reference range between 335 and 359 nm. Nevertheless, FeO(VIS) appears to\nstill contribute with non-negligible 25.0% there. In terms of the interpretation of this emission as based on FeO, this result is\nquestionable as Reaction R2 should only be exothermic by about 300 kJ mol−1 (Helmer and Plane, 1994), which corresponds\nto a minimum wavelength of about 400 nm. Although the separation of O2(UVB) and FeO(VIS) shortwards of the FeO main peak seems to be the most uncertain result of the NMF-based continuum decomposition, the FeO(VIS) contributions\n350\nin the UVB arm might support the presence of the blue FeO bands described by West and Broida (1975). With a higher\nsignificance, the high contribution of the component at about 800 nm might be explained by the presence of the FeO IR bands\n(Bass and Benedict, 1952; West and Broida, 1975), although the emission looks smoother than in the laboratory, where it\nwas not produced by Reaction R2. According to the analysis of Gattinger et al. (2011a), the emission of the FeO orange main peak seems to be the most uncertain result of the NMF-based continuum decomposition, the FeO(VIS) contributions\n350\nin the UVB arm might support the presence of the blue FeO bands described by West and Broida (1975). With a higher\nsignificance, the high contribution of the component at about 800 nm might be explained by the presence of the FeO IR bands\n(Bass and Benedict, 1952; West and Broida, 1975), although the emission looks smoother than in the laboratory, where it\nwas not produced by Reaction R2. 3.2\nContinuum decomposition On the other hand, small changes in the scaling factors can lead to a very different regime of solutions. 330 12 12 https://doi.org/10.5194/egusphere-2023-2087\nPreprint. Discussion started: 28 September 2023\nc⃝Author(s) 2023. CC BY 4.0 License. For finding minima of the cost function, we applied a simplicial homology global optimisation (SHGO; Endres et al., 2018)\nalgorithm in the “sobol” mode with 512 sampling points and a limitation of the scaling factors between 1 and 200. The resulting\nlist of local minima for L = 4 suggests an uncertainty in the contribution fractions of several per cent for the windows in the\nUVB and VIS arm and close to 1% for the two windows in the NIR arm. Eventually, we fine-tuned the most promising solution with scaling factors of about 139, 96, 68, and 65 (listed with increasing central wavelength of the feature window) by starting\n335\nan unconstrained simplex search algorithm (Nelder and Mead, 1965) with the given values as initial parameters. The resulting\nfactors were about 1291, 865, 638, and 597, which differ from the initial values only by a nearly constant factor. This points\nto a degeneracy of solutions, related to the fact that the values are much higher than 1, i.e. the NMF results appear to be\nmostly determined by the narrow feature windows. All reasonable local minima found by SHGO in the parameter space are with scaling factors of about 139, 96, 68, and 65 (listed with increasing central wavelength of the feature window) by starting\n335\nan unconstrained simplex search algorithm (Nelder and Mead, 1965) with the given values as initial parameters. The resulting\nfactors were about 1291, 865, 638, and 597, which differ from the initial values only by a nearly constant factor. This points\nto a degeneracy of solutions, related to the fact that the values are much higher than 1, i.e. the NMF results appear to be\nmostly determined by the narrow feature windows. All reasonable local minima found by SHGO in the parameter space are characterised by relatively high values (limited to a maximum of 200), although the ratios of the four factors can clearly differ. 340\nThe resulting mean continuum components based on refined simplex search are shown in Fig. 3a. The FeO(VIS) and X(NIR)\ncomponents contribute to the corresponding feature windows with 83.0% and 95.1%, respectively. Other reasonable solutions\ntend to show slightly lower percentages. The dominance of these two components extends to wavelengths far away from the\nmain features. A survey of the metal-related chemistry in the mesopause region turned out\nthat another abundant Fe-containing reservoir species (Plane, 2003; Feng et al., 2013; Plane et al., 2015) could be a possible\n365 that another abundant Fe-containing reservoir species (Plane, 2003; Feng et al., 2013; Plane et al., 2015) could be a possible\n365 13 0\n20\n40\n60\n80\nRadiance [R nm\n1]\n(a)\n(a)\n(a)\n(a)\n(a)\nNMF decomposition of X-shooter-based nightglow continuum\nMean\nX(NIR)\nFeO(VIS)\nO2(NIR)\nO2(UVB)\n400\n600\n800\n1000\n1200\n1400\n1600\n1800\nWavelength [nm]\n0\n20\nRadiance [R nm\n1]\n(b)\n5 components\n(b)\n5 components\n(b)\n5 components\n(b)\n5 components\n(b)\n5 components\nFigure 3. Decomposition of mean nightglow continuum spectrum at Cerro Paranal (black curve) into (a) four and (b) five components by\nnon-negative matrix factorisation of the selected 10,633 X-shooter spectra. The details of the procedure are discussed in Sect. 3.2. The\nf\ni\nt\nl b ll d X(NIR) F O(VIS) O (NIR)\nd O (UVB)\nhi h i di\nt\nth\nitti\nl\nl (if k\n)\nd\nhttps://doi.org/10.5194/egusphere-2023-2087\nPreprint. Discussion started: 28 September 2023\nc⃝Author(s) 2023. CC BY 4.0 License. 0\n20\n40\n60\n80\nRadiance [R nm\n1]\n(a)\n(a)\n(a)\n(a)\n(a)\nNMF decomposition of X-shooter-based nightglow continuum\nMean\nX(NIR)\nFeO(VIS)\nO2(NIR)\nO2(UVB)\n400\n600\n800\n1000\n1200\n1400\n1600\n1800\nWavelength [nm]\n0\n20\nRadiance [R nm\n1]\n(b)\n5 components\n(b)\n5 components\n(b)\n5 components\n(b)\n5 components\n(b)\n5 components 0\n20\n40\n60\n80\nRadiance [R nm\n1]\n(a)\n(a)\n(a)\n(a)\n(a)\nNMF decomposition of X-shooter-based nightglow continuum\nMean\nX(NIR)\nFeO(VIS)\nO2(NIR)\nO2(UVB)\n400\n600\n800\n1000\n1200\n1400\n1600\n1800\nWavelength [nm]\n0\n20\nRadiance [R nm\n1]\n(b)\n5 components\n(b)\n5 components\n(b)\n5 components\n(b)\n5 components\n(b)\n5 components\nFigure 3. Decomposition of mean nightglow continuum spectrum at Cerro Paranal (black curve) into (a) four and (b) five components by\nnon-negative matrix factorisation of the selected 10,633 X-shooter spectra. The details of the procedure are discussed in Sect. 3.2. The\nfour main components are labelled X(NIR), FeO(VIS), O2(NIR), and O2(UVB), which indicates the emitting molecule (if known) and\nthe X-shooter arm with the dominating contribution. The fifth component in (b) appears to mainly consist of residuals of strong nightglow\nemission lines. NMF decomposition of X-shooter-based nightglow continuum Figure 3. According to the analysis of Gattinger et al. (2011a), the emission of the FeO orange bands is also less structured in the mesopause region than in the laboratory due to a wider distribution of the vibrational\n355\npopulations. Moreover, it is possible that residuals of other emissions in the X-shooter continuum spectra led to an excessive\nremoval of small-scale features. The direct measurement of the broad feature between 745 and 855 nm (Fig. 2) at least shows\nthat the strength of this structure is well correlated with the peak at 595 nm. The measurements in the laboratory found FeO\nemission up to 1,400 nm. The FeO(VIS) spectrum appears to show a similar extension. However, the uncertainties of the minor contributions in the NIR arm compared to X(NIR) are large. 360\nThe FeO(VIS) component could partly be produced by other metal-bearing molecules if their emission showed a similar\nemission pattern. As already discussed in Sect. 3.1, NiO would be a candidate but the shape of the continuum between 500 and\n600 nm does not seem to allow a major contribution. We searched for other possible molecules that could produce a pseudo-\ncontinuum in the investigated wavelength regime. A survey of the metal-related chemistry in the mesopause region turned out\nthat another ab ndant F containing reser oir species (Plane 2003; Feng et al 2013; Plane et al 2015) co ld be a possible\n365 contributions in the NIR arm compared to X(NIR) are large. 360\nThe FeO(VIS) component could partly be produced by other metal-bearing molecules if their emission showed a similar\nemission pattern. As already discussed in Sect. 3.1, NiO would be a candidate but the shape of the continuum between 500 and\n600 nm does not seem to allow a major contribution. We searched for other possible molecules that could produce a pseudo-\ncontinuum in the investigated wavelength regime. p\ng\np g\ny\ng\ny\ng\nmodification appears to mostly affect O2(NIR) by essentially reducing it to the wavelengths of the two strong O2 bands. The\nrest is mostly described by the additional component, which seems to be sensitive to any other line residuals (e.g. from OH). 380\nNevertheless, the version with L = 4 is considered as the reference as it is more robust with respect to the important FeO(VIS)\nand X(NIR) components, which are slightly weakened in the case of L = 5. Tests with even larger numbers of components\nonly showed a higher complexity without improving the understanding of the nightglow continuum. rest is mostly described by the additional component, which seems to be sensitive to any other line residuals (e.g. from OH). 380\nNevertheless, the version with L = 4 is considered as the reference as it is more robust with respect to the important FeO(VIS)\nand X(NIR) components, which are slightly weakened in the case of L = 5. Tests with even larger numbers of components\nonly showed a higher complexity without improving the understanding of the nightglow continuum. Table 1. Wavelength positions of HO2 emission bands between 1,000 and 1,800 nm observed in the laboratory in comparison to the\nX-shooter-based X(NIR) spectrum Upper statea\nLower statea\nPeakb\nBand originc\nPresence in X(NIR)\n(nm)\n(nm)\n2A′(002)\n2A′′(000)\n1,130\n1,130\nnot measured (gap)\n2A′(001)\n2A′′(000)\n1,270\n1,257\nmoderate strength\n2A′(002)\n2A′′(001)\n(1,290)\n1,280\npossible but blended\n2A′(000)\n2A′′(000)\n1,430\n1,423\nnot measured (gap)\n2A′(001)\n2A′′(001)\n(1,480)\n1,446\nnot clear (partly in gap)\n2A′′(200)\n2A′′(000)\n1,510\n1,505\nvery strong\n2A′(000)\n2A′′(001)\n1,690\n1,670\nno clear feature\n2A′(001)\n2A′′(002)\n1,730\nweak feature a electronic and vibrational (v1v2v3) levels b as given by Becker et al. (1974) for low-resolution data (unresolved bands with calculated\nwavelengths in parentheses) c as measured by Becker et al. (1978) and/or Tuckett et al. (1979) at medium/high resolution If there is only one chemical process that produces the X(NIR) spectrum, the reaction tha If there is only one chemical process that produces the X(NIR) spectrum, the reaction that produces the excited states needs\nto be sufficiently exothermic to explain the derived emission at least between about 900 and 1,800 nm. The solution might\n385\nbe a molecule like OFeOH, where the variability pattern could also be quite different from the FeO emission variations. Decomposition of mean nightglow continuum spectrum at Cerro Paranal (black curve) into (a) fo Figure 3. Decomposition of mean nightglow continuum spectrum at Cerro Paranal (black curve) into (a) four and (b) five components by\ni\ni\nf\ni\ni\nf h\nl\nd\n6\nh\nh\nd\nil\nf h\nd\ndi\nd i\nh Figure 3. Decomposition of mean nightglow continuum spectrum at Cerro Paranal (black curve) into (a) four and (b) five components by non-negative matrix factorisation of the selected 10,633 X-shooter spectra. The details of the procedure are discussed in Sect. 3.2. The\nfour main components are labelled X(NIR), FeO(VIS), O2(NIR), and O2(UVB), which indicates the emitting molecule (if known) and\nthe X-shooter arm with the dominating contribution. The fifth component in (b) appears to mainly consist of residuals of strong nightglow\nemission lines. candidate. Unfortunately, chemiluminescence spectra of these molecules do not appear to exist. Nevertheless, inspection of the\nenergetics of the relevant chemical reactions only left the reaction FeOH + O3 →OFeOH∗+ O2\n(R6) (R6) as sufficiently exothermic with up to 339 kJ mol−1 (Sect. 4.1), i.e. almost the entire wavelength range in Fig. 3 could be\ncovered. We further discuss the possible role of OFeOH emission based on modelling results in Sect. 4.2. as sufficiently exothermic with up to 339 kJ mol−1 (Sect. 4.1), i.e. almost the entire wavelength range in Fig. 3 could be covered. We further discuss the possible role of OFeOH emission based on modelling results in Sect. 4.2. 370\nIn Fig. 3, the residuals of the strong O2 bands at 1,270 and 1,580 nm are clearly identified by their dedicated component\nO2(NIR). Nevertheless, the contributions are always smaller than those related to X(NIR). In the range between 1,260 and\n1,297 nm, the fraction is only 27.9%. This percentage might be underestimated since X(NIR) shows a similar bump, which 14 https://doi.org/10.5194/egusphere-2023-2087\nPreprint. Discussion started: 28 September 2023\nc⃝Author(s) 2023. CC BY 4.0 License. implies that the separation of both components is incomplete. On the other hand, the structure in the mean spectrum is broader implies that the separation of both components is incomplete. On the other hand, the structure in the mean spectrum is broader implies that the separation of both components is incomplete. On the other hand, the structure in the mean spectrum is broader\nthan the O2(a-X)(0-0) band (especially at longer wavelengths), which could suggest that at least a shallow X-related feature is\n375\npresent in this wavelength range. The weak features at about 1,080 and 1,735 nm are not strong enough to be classified with\nthe NMF approach. than the O2(a-X)(0-0) band (especially at longer wavelengths), which could suggest that at least a shallow X-related feature is\n375\npresent in this wavelength range. The weak features at about 1,080 and 1,735 nm are not strong enough to be classified with\nthe NMF approach. We checked how the components change if L is set to 5 (keeping everything else untouched). As indicated by Fig. 3b, this\nmodification appears to mostly affect O2(NIR) by essentially reducing it to the wavelengths of the two strong O2 bands. The\nrest is mostly described by the additional component which seems to be sensitive to any other line residuals (e g from OH)\n380 than the O2(a-X)(0-0) band (especially at longer wavelengths), which could suggest that at least a shallow X-related feature is\n375\npresent in this wavelength range. The weak features at about 1,080 and 1,735 nm are not strong enough to be classified with\nthe NMF approach. We checked how the components change if L is set to 5 (keeping everything else untouched). As indicated by Fig. 3b, this\nmodification appears to mostly affect O2(NIR) by essentially reducing it to the wavelengths of the two strong O2 bands. The\nrest is mostly described by the additional component, which seems to be sensitive to any other line residuals (e.g. from OH). 380\nNevertheless, the version with L = 4 is considered as the reference as it is more robust with respect to the important FeO(VIS)\nand X(NIR) components, which are slightly weakened in the case of L = 5. Tests with even larger numbers of components\nonly showed a higher complexity without improving the understanding of the nightglow continuum. It is\nalso possible that the radiating molecule does not include a metal atom if it is sufficiently complex to be suitable to produce\na pseudo-continuum in a wide wavelength range. Here, hydroperoxyl (HO2) appears to be the best candidate. HO2 is often\ndiscussed in terms of mesospheric chemistry with respect to the reaction If there is only one chemical process that produces the X(NIR) spectrum, the reaction that produces the excited states needs\nto be sufficiently exothermic to explain the derived emission at least between about 900 and 1,800 nm. The solution might\n385\nbe a molecule like OFeOH, where the variability pattern could also be quite different from the FeO emission variations. It is\nalso possible that the radiating molecule does not include a metal atom if it is sufficiently complex to be suitable to produce\na pseudo-continuum in a wide wavelength range. Here, hydroperoxyl (HO2) appears to be the best candidate. HO2 is often\ndiscussed in terms of mesospheric chemistry with respect to the reaction HO2 + O →OH∗+ O2,\n(R7)\n390 (R7) HO2 + O →OH∗+ O2,\n390 15 (R8)\n400\nThe resulting bands up to 1,800 nm listed by Becker et al. (1974) are given by Table 1. The peak wavelengths are complimented\nby band origins derived from higher-resolution data of Becker et al. (1978) and Tuckett et al. (1979). In some cases, the provided\nwavelengths were obtained from the combination of the molecular data of both publications. Most bands in Table 1 are related\nto transitions between the lowest-lying excited electronic state 2A′ and the ground state 2A′′ that involve the v3 O−OH (R8) The resulting bands up to 1,800 nm listed by Becker et al. (1974) are given by Table 1. The peak wavelengths are complimented\nby band origins derived from higher-resolution data of Becker et al. (1978) and Tuckett et al. (1979). In some cases, the provided\nwavelengths were obtained from the combination of the molecular data of both publications. Most bands in Table 1 are related\nto transitions between the lowest-lying excited electronic state 2A′ and the ground state 2A′′ that involve the v3 O−OH stretching vibration of both levels. Interestingly, the excitation energies of 2A′(001) and O2(a1∆g) are almost identical. As a\n405\nconsequence, the resulting near-resonant energy transfer produces the HO2 emission feature near 1,270 nm. This is appealing\nas this would explain our NMF results in this wavelength region. The strongest band in the experiments cannot be checked as\nwavelengths around 1,430 nm corresponding to the (000-000) band were excluded in our analysis due to the strong absorption\nby atmospheric water vapour (see Fig. 1). However, the most promising argument for HO2 as X is the only purely vibrational stretching vibration of both levels. Interestingly, the excitation energies of 2A′(001) and O2(a1∆g) are almost identical. As a\n405\nconsequence, the resulting near-resonant energy transfer produces the HO2 emission feature near 1,270 nm. This is appealing\nas this would explain our NMF results in this wavelength region. The strongest band in the experiments cannot be checked as\nwavelengths around 1,430 nm corresponding to the (000-000) band were excluded in our analysis due to the strong absorption\nby atmospheric water vapour (see Fig. 1). However, the most promising argument for HO2 as X is the only purely vibrational band in the list. The (200-000) transition that involves the OO−H stretching mode peaks near 1,500 and 1,510 nm (e.g.,\n410\nHunziker and Wendt, 1974). The second maximum clearly agrees with the peak of our X(NIR) main feature. The invisibility\nof the first maximum might be caused by systematic uncertainties in the continuum separation near the Q branch of OH(3-1)\n(Fig. 1) combined with a less pronounced dip at the band origin in the nightglow spectrum. Other bands of Table 1 that can be checked should peak near 1,690 and 1,730 nm. While we see a possible weak feature in band in the list. The (200-000) transition that involves the OO−H stretching mode peaks near 1,500 and 1,510 nm (e.g.,\n410\nHunziker and Wendt, 1974). The second maximum clearly agrees with the peak of our X(NIR) main feature. The invisibility\nof the first maximum might be caused by systematic uncertainties in the continuum separation near the Q branch of OH(3-1)\n(Fig. 1) combined with a less pronounced dip at the band origin in the nightglow spectrum. Other bands of Table 1 that can be checked should peak near 1,690 and 1,730 nm. While we see a possible weak feature in band in the list. The (200-000) transition that involves the OO−H stretching mode peaks near 1,500 and 1,510 nm (e.g.,\n410\nHunziker and Wendt, 1974). The second maximum clearly agrees with the peak of our X(NIR) main feature. The invisibility\nof the first maximum might be caused by systematic uncertainties in the continuum separation near the Q branch of OH(3-1)\n(Fig. 1) combined with a less pronounced dip at the band origin in the nightglow spectrum. Other bands of Table 1 that can be checked should peak near 1,690 and 1,730 nm. While we see a possible weak feature in Other bands of Table 1 that can be checked should peak near 1,690 and 1,730 nm. While we see a possible weak feature in\nthe X-shooter spectrum in the latter case, there is no clear structure near 1,690 nm. This result is not necessarily an argument\n415\nagainst HO2 as the vibronic (000-001) band was much weaker than the (001-000) band near 1,270 nm in the experiment of\nFink and Ramsay (1997). A more crucial issue could be the missing evidence for a strong feature near 1,620 nm (Fig. 3) in\nthe laboratory. If HO2 is indeed the correct emitter (i.e. https://doi.org/10.5194/egusphere-2023-2087\nPreprint. Discussion started: 28 September 2023\nc⃝Author(s) 2023. CC BY 4.0 License. which is an alternative production mechanism for vibrationally-excited OH (e.g., Makhlouf et al., 1995; Xu et al., 2012; Panka\net al., 2021). The latest results of Panka et al. (2021) suggest that this pathway contributes significantly to the concentration of\nOH in the lower mesopause region around 80 km, although the resulting vibrational level distribution remains uncertain. The\nabundance of HO2 in the mesosphere has been observed from the ground (Clancy et al., 1994; Sandor and Clancy, 1998) and\nfrom space (Pickett et al., 2008; Baron et al., 2009; Kreyling et al., 2013; Millán et al., 2015) based on individual lines in the\n395\nmicrowave range. While the highest daytime densities tend to be between 75 and 80 km, the weaker nighttime maxima were\nobserved between 80 and 90 km at low latitudes, with the highest altitudes before sunrise (Kreyling et al., 2013). The near-IR\nspectrum of HO2 has been widely investigated in the laboratory (e.g., Hunziker and Wendt, 1974; Becker et al., 1974, 1978;\nTuckett et al 1979; Holstein et al 1983; Fink and Ramsay 1997) Emission was mainly produced by the reaction which is an alternative production mechanism for vibrationally-excited OH (e.g., Makhlouf et al., 1995; Xu et al., 2012; Panka\net al., 2021). The latest results of Panka et al. (2021) suggest that this pathway contributes significantly to the concentration of\nOH in the lower mesopause region around 80 km, although the resulting vibrational level distribution remains uncertain. The\nabundance of HO2 in the mesosphere has been observed from the ground (Clancy et al., 1994; Sandor and Clancy, 1998) and from space (Pickett et al., 2008; Baron et al., 2009; Kreyling et al., 2013; Millán et al., 2015) based on individual lines in the\n395\nmicrowave range. While the highest daytime densities tend to be between 75 and 80 km, the weaker nighttime maxima were\nobserved between 80 and 90 km at low latitudes, with the highest altitudes before sunrise (Kreyling et al., 2013). The near-IR\nspectrum of HO2 has been widely investigated in the laboratory (e.g., Hunziker and Wendt, 1974; Becker et al., 1974, 1978;\nTuckett et al., 1979; Holstein et al., 1983; Fink and Ramsay, 1997). Emission was mainly produced by the reaction 395 HO2 + O2(a1∆g) →HO∗\n2 + O2. In the view of the remaining uncertainties, we do not replace X by\na specific molecule in the following. First, further properties of the unknown emission have to be discussed. with M being an arbitrary collision partner (i.e. N2 and O2 in the mesosphere). Here, the spectrum showed a weaker dependence\nof the intensities of the vibronic (00v′\n3-000) bands on v′\n3 than in the case of collisions with O2(a1∆g). The recombination of H and O2 is also sufficiently exothermic to produce emission potentially as far as about 600 nm. Other chemical reactions\n435\nproducing excited HO2 could also play a role (see Sect. 4). In the view of the remaining uncertainties, we do not replace X by\na specific molecule in the following. First, further properties of the unknown emission have to be discussed. H and O2 is also sufficiently exothermic to produce emission potentially as far as about 600 nm. Other chemical reactions\n435\nproducing excited HO2 could also play a role (see Sect. 4). In the view of the remaining uncertainties, we do not replace X by\na specific molecule in the following. First, further properties of the unknown emission have to be discussed. species X), then the population distributions need to be very different\nin the mesopause region, where the pressure is much lower (3 orders of magnitude) compared to the experiment of Fink and the X-shooter spectrum in the latter case, there is no clear structure near 1,690 nm. This result is not necessarily an argument\n415\nagainst HO2 as the vibronic (000-001) band was much weaker than the (001-000) band near 1,270 nm in the experiment of\nFink and Ramsay (1997). A more crucial issue could be the missing evidence for a strong feature near 1,620 nm (Fig. 3) in\nthe laboratory. If HO2 is indeed the correct emitter (i.e. species X), then the population distributions need to be very different\nin the mesopause region, where the pressure is much lower (3 orders of magnitude) compared to the experiment of Fink and Ramsay (1997). The spectrum of the latter study that covers the wavelength range between 1,200 and 1,800 nm indicates\n420\nweaker emission at 1,510 nm than at 1,270 nm. This could point to an increased importance of purely vibrational transitions\nin the nightglow. Various additional bands might be visible, which could explain the 1,620 nm feature and the relatively high\nemission over a wide wavelength range. In contrast to X(NIR), the laboratory spectrum does not show significant emission\nbetween 1,320 and 1,350 nm as well as below 1,200 nm. The latter is certainly related to Reaction R8, which limits the Ramsay (1997). The spectrum of the latter study that covers the wavelength range between 1,200 and 1,800 nm indicates\n420\nweaker emission at 1,510 nm than at 1,270 nm. This could point to an increased importance of purely vibrational transitions\nin the nightglow. Various additional bands might be visible, which could explain the 1,620 nm feature and the relatively high\nemission over a wide wavelength range. In contrast to X(NIR), the laboratory spectrum does not show significant emission\nbetween 1,320 and 1,350 nm as well as below 1,200 nm. The latter is certainly related to Reaction R8, which limits the 16 3.3\nIntensity climatologies The NMF also returns the scaling factors of each component for each input spectrum. The resulting variability patterns are the The NMF also returns the scaling factors of each component for each input spectrum. The resulting variability patterns are the\nbasis for the separation of the components shown in Fig. 3. Before we discuss the variations of the different components, we\n440\nfocus on a comparison of the variability of the two most interesting, directly measured features. These are the peaks at about\n595 and 1,510 nm, which are closely related to the NMF components FeO(VIS) and X(NIR). The two peaks were measured by\nthe interpolation between 584 and 607 nm as well as 1,485 and 1,550 nm for the derivation of the underlying continuum (see\nFig. 2). The latter feature was then subtracted from the integrated flux in the same wavelength intervals in order to obtain the feature intensity. Unterguggenberger et al. (2017) already measured the FeO main peak with a similar approach using 3,662\n445\nX-shooter VIS-arm spectra taken between October 2009 and March 2013. The continuum spectra were extracted slightly\ndifferently by interpolating between wavelengths significantly affected by line emission and leaving the rest of the spectrum\nuntouched. As that method causes noisier spectra than in the case of the percentile filters used in this study (45th percentile and\na relative width of 0.008 of the filter at the peak-related wavelengths), the positions for the interpolation on both sides of the peak were adapted to the corresponding flux minima in each spectrum. Unterguggenberger et al. (2017) reported a reference\n450\nintensity of the FeO main peak based on a harmonic model of the seasonal variations of 23.2 ± 1.1 R. Our sample shows a\nmean of 27.0 R, which indicates good agreement under consideration of the differences in the sample and the measurement\napproaches. For comparison, the mean of the peak at 1,510 nm amounts to 1,371 R, i.e. it is about 51 times stronger. The ratio\nwould even be higher for wider feature limits around 1,510 nm that would be reasonable for the X(NIR) component in Fig. 3. For example, the interval between 1,472 and 1,591 nm would lead to 1,983 R, i.e. a rise by a factor of 1.45 compared to the\n455\ntighter interval defined in Fig. https://doi.org/10.5194/egusphere-2023-2087\nPreprint. Discussion started: 28 September 2023\nc⃝Author(s) 2023. CC BY 4.0 License. emission below 1,270 nm. Nevertheless, Becker et al. (1974) could measure the vibronic (002-000) band near 1,130 nm (in\n425\na gap in Fig. 3) and explained it by already vibrationally excited HO2 as reaction partner. In a similar way, Holstein et al. (1983) assumed that two subsequent collisions with O2(a1∆g) are required to excite this band and additional weaker bands in\nthe range between 800 and 1,100 nm that involve 2A′ v3 states between 3 and 6. The lower wavelength limit for the observed\nemission would be consistent with the shape of the X(NIR) component. Importantly, Holstein et al. (1983) found that chemiluminescence can also be generated at wavelengths longer than 800 nm\n430\nby the main atmospheric production process of HO2 (e.g., Makhlouf et al., 1995)\nH + O2 + M →HO∗\n2 + M\n(R9) Importantly, Holstein et al. (1983) found that chemiluminescence can also be generated at wavelengths longer than 800 nm\n430\nby the main atmospheric production process of HO2 (e.g., Makhlouf et al., 1995) Importantly, Holstein et al. (1983) found that chemiluminescence can also be generated at wavelengths longer than 800 nm\n430\nby the main atmospheric production process of HO2 (e.g., Makhlouf et al., 1995)\nH + O2 + M →HO∗\n2 + M\n(R9)\nwith M being an arbitrary collision partner (i.e. N2 and O2 in the mesosphere). Here, the spectrum showed a weaker dependence\nof the intensities of the vibronic (00v′ 000) bands on v′ than in the case of collisions with O (a1∆) The recombination of Importantly, Holstein et al. (1983) found that chemiluminescence can also be generated at wavelengths longer than 800 nm\n430\nby the main atmospheric production process of HO2 (e.g., Makhlouf et al., 1995) H + O2 + M →HO∗\n2 + M (R9) with M being an arbitrary collision partner (i.e. N2 and O2 in the mesosphere). Here, the spectrum showed a weaker dependence\nof the intensities of the vibronic (00v′\n3-000) bands on v′\n3 than in the case of collisions with O2(a1∆g). The recombination of\nH and O2 is also sufficiently exothermic to produce emission potentially as far as about 600 nm. Other chemical reactions\n435\nproducing excited HO2 could also play a role (see Sect. 4). 3.3\nIntensity climatologies 2, which we preferred for the measurements in the full spectra in order to avoid the varying\ncontamination by the residuals of the O2(a-X)(0-1) band. For example, the interval between 1,472 and 1,591 nm would lead to 1,983 R, i.e. a rise by a factor of 1.45 compared to the\n455\ntighter interval defined in Fig. 2, which we preferred for the measurements in the full spectra in order to avoid the varying\ncontamination by the residuals of the O2(a-X)(0-1) band. 17 Hence, the uncertainties in the\nregression results do not critically affect the quality of the climatologies. The effective intensities of the two features derived from the final climatologies are 27.3 and 1,386 R, which are very close to the mean values for the individual measurements. 480\nIn order to better understand the quality of the climatologies, we also calculated them for a minimum sample size of 400 for\neach grid point as this was the limit used by Noll et al. (2023b) for a total number of bins of up to 19,570. As the NMF-related\ndata set is distinctly smaller, this choice causes smoother climatologies due to the necessary increase of the selection radius. Between 20:00 and 04:00 LT, its mean is 1.43. On the other hand, larger subsamples can reduce the statistical uncertainties. Despite these differences, the intensity climatologies look very similar. The correlation coefficients for the comparison of the\n485\nversions with lower limits of 200 and 400 bins (only considering grid cells with a nighttime fraction higher than 20%) for the\ntwo features are higher than +0.98. The impact is larger on the climatologies of the solar cycle effect (SCE), i.e. the relations\nbetween the investigated property and the solar radio flux. For this comparison, the coefficients are +0.86 and +0.80 for the\nfeatures at 595 and 1,510 nm. Despite these differences, the intensity climatologies look very similar. The correlation coefficients for the comparison of the\n485\nversions with lower limits of 200 and 400 bins (only considering grid cells with a nighttime fraction higher than 20%) for the\ntwo features are higher than +0.98. The impact is larger on the climatologies of the solar cycle effect (SCE), i.e. the relations\nbetween the investigated property and the solar radio flux. For this comparison, the coefficients are +0.86 and +0.80 for the\nfeatures at 595 and 1,510 nm. As another test, we investigated the impact of the increase of the total sample size on the climatologies. For the two contin-\n490\nuum features, the data selection can be extended as it is only required that they can be measured satisfactorily irrespective of the\nsituation at other wavelengths. As the feature at 1,510 nm is relatively bright, the number of suitable spectra could be increased As another test, we investigated the impact of the increase of the total sample size on the climatologies. In the case of fewer bins, the radius was increased in steps of 0.1 until the criterion was fulfilled. As this issue\nmainly concerns grid points close to twilight, the temporal resolution at the margins of the climatologies is lower than in the\nmiddle of the night. In the LT range between 20:00 and 04:00, the mean relative radius was 1.08. The final climatologies are\nprovided relative to the effective mean, for which the grid point data were averaged weighted by the night contribution (defined points were derived from the average of all bins within a radius of 1 h and 1 average month at least if a minimum of 200 bins\n470\nwere selected. In the case of fewer bins, the radius was increased in steps of 0.1 until the criterion was fulfilled. As this issue\nmainly concerns grid points close to twilight, the temporal resolution at the margins of the climatologies is lower than in the\nmiddle of the night. In the LT range between 20:00 and 04:00, the mean relative radius was 1.08. The final climatologies are\nprovided relative to the effective mean, for which the grid point data were averaged weighted by the night contribution (defined by a minimum solar zenith angle of 100◦) of the surrounding cells. Moreover, they are given for a reference solar radio flux at\n475\n10.7 cm (Tapping, 2013) averaged for 27 days of 100 solar flux units (sfu). This approach compensates for values between 88\nand 110 sfu (with an effective value of 99 sfu) for the different grid points assuming a linear relation between the investigated\nproperty and the solar radio flux. The corrections are of the order of a few per cent at most. Hence, the uncertainties in the\nregression results do not critically affect the quality of the climatologies. The effective intensities of the two features derived by a minimum solar zenith angle of 100◦) of the surrounding cells. Moreover, they are given for a reference solar radio flux at\n475\n10.7 cm (Tapping, 2013) averaged for 27 days of 100 solar flux units (sfu). This approach compensates for values between 88\nand 110 sfu (with an effective value of 99 sfu) for the different grid points assuming a linear relation between the investigated\nproperty and the solar radio flux. The corrections are of the order of a few per cent at most. https://doi.org/10.5194/egusphere-2023-2087\nPreprint. Discussion started: 28 September 2023\nc⃝Author(s) 2023. CC BY 4.0 License. For the study of the variability, we calculated 2D climatologies of local time and day of year in the same way as described\nin Noll et al. (2023b) for OH emission lines. The measured OH line intensities were not directly used (see also Noll et al.,\n2022a). Instead, the time series were divided into bins of 30 min and intensities of data with central times in a certain bin were\n460\naveraged weighted by the exposure time. The reason for this approach was the wide range of exposure times down to 10 s,\nwhich could lead to a high weight of a large number of short low-quality exposures (partly clustered in time) in the resulting\nclimatologies if the individual measurements were used. For the NMF-related sample of this study, this is less problematic\nas only exposures with a minimum length of 10 min were considered. Nevertheless, we also performed this preparatory step for the sake of consistency. Noll et al. (2023b) only selected those bins with a minimum filling of 10 min. This criterion is\n465\nautomatically fulfilled by the NMF-related sample. However, this approach led to a reduction of the number of data points\nfrom 10,633 to 7,971 (75.0%). The climatologies consist of a grid of the centres of the 12 hours between 18:00 and 06:00 LT (the local time related to\nthe solar mean time at Cerro Paranal) and the centres of the 12 months in days of year. The reference values for these grid for the sake of consistency. Noll et al. (2023b) only selected those bins with a minimum filling of 10 min. This criterion is\n465\nautomatically fulfilled by the NMF-related sample. However, this approach led to a reduction of the number of data points\nfrom 10,633 to 7,971 (75.0%). The climatologies consist of a grid of the centres of the 12 hours between 18:00 and 06:00 LT (the local time related to\nthe solar mean time at Cerro Paranal) and the centres of the 12 months in days of year The reference values for these grid points were derived from the average of all bins within a radius of 1 h and 1 average month at least if a minimum of 200 bins\n470\nwere selected. The result correlates very well with the climatology of the small sample with high resolution. The correlation coefficient r is +0.996. On the other hand, the SCE-related climatology indicates an r of only +0.38, probably\npartly caused by a vanished outlier in the case of the large sample. Hence, the details of the SCE with respect to LT and day of\nyear remain uncertain, whereas the intensity-related results appear to be quite robust. to 45,037 including data with minimum exposure times of 3 min (instead of 10 min). This sample resulted in 17,482 30 min\nbins (an increase by a factor of 2.2), which allowed us to calculate an intensity climatology with a minimum subsample size\nof 400 without resolution losses. The result correlates very well with the climatology of the small sample with high resolution. to 45,037 including data with minimum exposure times of 3 min (instead of 10 min). This sample resulted in 17,482 30 min\nbins (an increase by a factor of 2.2), which allowed us to calculate an intensity climatology with a minimum subsample size (\ny\n),\ny\ngy\np\nof 400 without resolution losses. The result correlates very well with the climatology of the small sample with high resolution. 95\nThe correlation coefficient r is +0.996. On the other hand, the SCE-related climatology indicates an r of only +0.38, probably\npartly caused by a vanished outlier in the case of the large sample. Hence, the details of the SCE with respect to LT and day of\nyear remain uncertain, whereas the intensity-related results appear to be quite robust. of 400 without resolution losses. The result correlates very well with the climatology of the small sample with high resolution. 495\nThe correlation coefficient r is +0.996. On the other hand, the SCE-related climatology indicates an r of only +0.38, probably\npartly caused by a vanished outlier in the case of the large sample. Hence, the details of the SCE with respect to LT and day of\nyear remain uncertain, whereas the intensity-related results appear to be quite robust. In the case of the FeO main peak, the extension of the data set was more limited as the feature is distinctly fainter and In the case of the FeO main peak, the extension of the data set was more limited as the feature is distinctly fainter and\nthe sample of VIS-arm spectra is smaller. https://doi.org/10.5194/egusphere-2023-2087\nPreprint. Discussion started: 28 September 2023\nc⃝Author(s) 2023. CC BY 4.0 License. 0\n100\n200\n300\nDay of year\n4\n2\n0\n2\n4\nLocal time [h]\n(a)\nFeature at 595 nm indicating FeO\n0\n100\n200\n300\nDay of year\n4\n2\n0\n2\n4\nLocal time [h]\n(b)\nFeature at 1,510 nm indicating X\n0.6\n0.7\n0.8\n0.9\n1.0\n1.1\n1.2\n1.3\n1.4\n1.5\nRelative intensity\n0.6\n0.7\n0.8\n0.9\n1.0\n1.1\n1.2\n1.3\n1.4\n1.5\n1.6\n1.7\n1.8\nRelative intensity\nFigure 4. Climatologies of intensity relative to the mean as a function of local time (step size of 1 h) and day of year (step size of 1 month)\nfor the continuum features at (a) 595 nm and (b) 1,510 nm based on a sample of 7,971 30 min bins and a minimum subsample size of 200. The climatologies are representative of a solar radio flux of 100 sfu. The coloured contours are limited to times with solar zenith angles larger\nthan 100◦. Lighter colours at the left and right margins mark repeated parts of the variability pattern. 0\n100\n200\n300\nDay of year\n4\n2\n0\n2\n4\nLocal time [h]\n(a)\nFeature at 595 nm indicating FeO\n0.6\n0.7\n0.8\n0.9\n1.0\n1.1\n1.2\n1.3\n1.4\n1.5\nRelative intensity 0\n100\n200\n300\nDay of year\n4\n2\n0\n2\n4\nLocal time [h]\n(b)\nFeature at 1,510 nm indicating X\n0.6\n0.7\n0.8\n0.9\n1.0\n1.1\n1.2\n1.3\n1.4\n1.5\n1.6\n1.7\n1.8\nRelative intensity Figure 4. Climatologies of intensity relative to the mean as a function of local time (step size of 1 h) and day of year (step size of 1 month)\nfor the continuum features at (a) 595 nm and (b) 1,510 nm based on a sample of 7,971 30 min bins and a minimum subsample size of 200. The climatologies are representative of a solar radio flux of 100 sfu. The coloured contours are limited to times with solar zenith angles larger\nthan 100◦. Lighter colours at the left and right margins mark repeated parts of the variability pattern. to 45,037 including data with minimum exposure times of 3 min (instead of 10 min). This sample resulted in 17,482 30 min\nbins (an increase by a factor of 2.2), which allowed us to calculate an intensity climatology with a minimum subsample size\nof 400 without resolution losses. For the two contin-\n490\nuum features, the data selection can be extended as it is only required that they can be measured satisfactorily irrespective of the\nsituation at other wavelengths. As the feature at 1,510 nm is relatively bright, the number of suitable spectra could be increased 18 https://doi.org/10.5194/egusphere-2023-2087\nPreprint. Discussion started: 28 September 2023\nc⃝Author(s) 2023. CC BY 4.0 License. Finally, we selected 22,322 intensity measurements with a minimum exposure time\n500\nof 5 min, which were converted into 12,785 bins corresponding to an increase of the sample size by a factor of 1.6. The\nclimatology was then also calculated using a minimum subsample size of 400. The resulting intensity variations show a high\nsimilarity with those of the small sample as an r of +0.986 indicates. Nevertheless, there appears to be an issue with the large\nsample with respect to the effective intensity of the climatology, which turned out to be 11.5% higher than in the case of the the sample of VIS-arm spectra is smaller. Finally, we selected 22,322 intensity measurements with a minimum exposure time\n500\nof 5 min, which were converted into 12,785 bins corresponding to an increase of the sample size by a factor of 1.6. The\nclimatology was then also calculated using a minimum subsample size of 400. The resulting intensity variations show a high\nsimilarity with those of the small sample as an r of +0.986 indicates. Nevertheless, there appears to be an issue with the large\nsample with respect to the effective intensity of the climatology, which turned out to be 11.5% higher than in the case of the small sample. The effective intensity of the 1,510 nm feature only increased by 2.3%. This points to a significant contamination\n505\nby remnants especially of astronomical objects, suggesting that a relaxation of the selection criteria is problematic for the\n595 nm feature. Interestingly, the correlation coefficient for the SCE and the 595 nm feature is +0.76, i.e. it is higher than for\nthe NIR-arm feature. This could be related to a smoother climatology without clear outliers. 19 the chemical set-up appears to be different between\nday and night. Examples of such cases are OH emission especially below 84 km (Marsh et al., 2006; Noll et al., 2023b) due to\ncessation of O2 photolysis, and O2(a-X) emission (Noll et al., 2016) due to the cessation of O3 photolysis. Interestingly, Trinh\net al. (2013) previously reported a decrease of the continuum between 1,516 and 1,522 nm in the first half of the night based on in all months of the year. Only in the middle of the year in the morning, a plateau appears to be reached. This pattern points\n530\nto a loss of the excited radiating molecules with the start of the night, i.e. the chemical set-up appears to be different between\nday and night. Examples of such cases are OH emission especially below 84 km (Marsh et al., 2006; Noll et al., 2023b) due to\ncessation of O2 photolysis, and O2(a-X) emission (Noll et al., 2016) due to the cessation of O3 photolysis. Interestingly, Trinh\net al. (2013) previously reported a decrease of the continuum between 1,516 and 1,522 nm in the first half of the night based on in all months of the year. Only in the middle of the year in the morning, a plateau appears to be reached. This pattern points\n530\nto a loss of the excited radiating molecules with the start of the night, i.e. the chemical set-up appears to be different between\nday and night. Examples of such cases are OH emission especially below 84 km (Marsh et al., 2006; Noll et al., 2023b) due to\ncessation of O2 photolysis, and O2(a-X) emission (Noll et al., 2016) due to the cessation of O3 photolysis. Interestingly, Trinh\net al. (2013) previously reported a decrease of the continuum between 1,516 and 1,522 nm in the first half of the night based on spectra from the Anglo-Australian Telescope (31◦S) taken during five nights in September 2011 (see Sect. 1). The decrease in\n535\nthe evening appeared to be slightly faster than in the case of the Q branch of OH(3-1). This is consistent with our results from\na comparison with the corresponding OH line climatologies from Noll et al. (2023b), which indicated an about 15% higher\nintensity reduction between 19:30 and 21:30 LT for the continuum peak on average. The changes do not exceed 10 to 20% of the mean value in most parts of the\nclimatology. On average, there is a shallow minimum in the middle of the night. The month-dependent nocturnal variations instrument onboard the Thermosphere Ionosphere Mesosphere Energetics Dynamics (TIMED) satellite (Russell et al., 1999)\n520\nfor Cerro Paranal at 89 km analysed by Noll et al. (2019). Unterguggenberger et al. (2017) also investigated the average\nnocturnal patterns in the different seasons and found only weak changes without clear trend. With the larger sample of this\nstudy, these observations can be confirmed. The changes do not exceed 10 to 20% of the mean value in most parts of the\nclimatology. On average, there is a shallow minimum in the middle of the night. The month-dependent nocturnal variations could be related to the impact of tides. The corresponding features are visible more clearly in the O number density at about\n525\n89 km (Noll et al., 2019) and OH emissions especially of lines with relatively high rotational quantum number (Noll et al.,\n2023b), which are not particularly affected by the rapid nocturnal loss of daytime-produced O close to 80 km. The 2D climatology of the continuum feature at 1,510 nm in Fig. 4b is very different from the pattern observed for the\nstructure at 595 nm. There is a striking decrease of the intensity by a factor of 2 to 3 from the beginning to the end of the night could be related to the impact of tides. The corresponding features are visible more clearly in the O number density at about\n525\n89 km (Noll et al., 2019) and OH emissions especially of lines with relatively high rotational quantum number (Noll et al.,\n2023b), which are not particularly affected by the rapid nocturnal loss of daytime-produced O close to 80 km. The 2D climatology of the continuum feature at 1,510 nm in Fig. 4b is very different from the pattern observed for the\nstructure at 595 nm. There is a striking decrease of the intensity by a factor of 2 to 3 from the beginning to the end of the night in all months of the year. Only in the middle of the year in the morning, a plateau appears to be reached. This pattern points\n530\nto a loss of the excited radiating molecules with the start of the night, i.e. https://doi.org/10.5194/egusphere-2023-2087\nPreprint. Discussion started: 28 September 2023\nc⃝Author(s) 2023. CC BY 4.0 License. As illustrated by the previous discussion, the 2D climatologies of the relative intensity variations of the 595 and 1,510 nm\nfeatures can be considered as robust. For the NMF-related sample and a minimum subsample size of 200, these climatologies\n510\nare shown in Fig. 4. The variations of the FeO emission peak in (a) are mainly characterised by a semiannual oscillation (SAO)\nwith maxima in April/May (nightly averaged relative intensity of 1.40) and October (1.17) and minima in January (0.61) and\nJuly/August (0.86). The higher intensities for the maxima and minima in April/May and July/August also indicate an annual\noscillation (AO) with a maximum in austral autumn/winter. This result is in good agreement with the harmonic fits of the smaller X-shooter data set of Unterguggenberger et al. (2017) (see Sect. 1), which only included spectra until March 2013. 515\nWACCM simulations (Feng et al., 2013) suggest that the AO is mainly driven by the Fe concentration, which depends on the\nmeteoric injection rate (maximum in March/April) and subsequent chemical reactions, whereas the SAO is mainly linked to\nthe intra-annual variations of the other FeO-producing reactant, i.e. O3. The concentration maxima of the latter shortly after\nthe equinoxes can also be seen in data of the Sounding of the Atmosphere using Broadband Emission Radiometry (SABER) smaller X-shooter data set of Unterguggenberger et al. (2017) (see Sect. 1), which only included spectra until March 2013. 515\nWACCM simulations (Feng et al., 2013) suggest that the AO is mainly driven by the Fe concentration, which depends on the\nmeteoric injection rate (maximum in March/April) and subsequent chemical reactions, whereas the SAO is mainly linked to\nthe intra-annual variations of the other FeO-producing reactant, i.e. O3. The concentration maxima of the latter shortly after\nthe equinoxes can also be seen in data of the Sounding of the Atmosphere using Broadband Emission Radiometry (SABER) instrument onboard the Thermosphere Ionosphere Mesosphere Energetics Dynamics (TIMED) satellite (Russell et al., 1999)\n520\nfor Cerro Paranal at 89 km analysed by Noll et al. (2019). Unterguggenberger et al. (2017) also investigated the average\nnocturnal patterns in the different seasons and found only weak changes without clear trend. With the larger sample of this\nstudy, these observations can be confirmed. The seasonal variations of the 1,510 nm\nfeature show a main maximum in January (nightly averaged relative intensity of 1.59), a secondary maximum in July/August spectra from the Anglo-Australian Telescope (31◦S) taken during five nights in September 2011 (see Sect. 1). The decrease in\n535\nthe evening appeared to be slightly faster than in the case of the Q branch of OH(3-1). This is consistent with our results from\na comparison with the corresponding OH line climatologies from Noll et al. (2023b), which indicated an about 15% higher\nintensity reduction between 19:30 and 21:30 LT for the continuum peak on average. The seasonal variations of the 1,510 nm\nfeature show a main maximum in January (nightly averaged relative intensity of 1.59), a secondary maximum in July/August (1.02), and minima in April (0.77) and October (0.84). This behaviour is almost the exact opposite of the seasonal variations\n540\nof the FeO main peak. The correlation coefficient for the monthly mean values is −0.90. This anticorrelation does not seem to\nsupport a strong impact of O3 in the production of emitter X. This can be an issue for OFeOH as produced by Reaction R6. On the other hand, the seasonal variability of the 1,510 nm emission is reminiscent of the one expected for atomic hydrogen (1.02), and minima in April (0.77) and October (0.84). This behaviour is almost the exact opposite of the seasonal variations\n540\nof the FeO main peak. The correlation coefficient for the monthly mean values is −0.90. This anticorrelation does not seem to\nsupport a strong impact of O3 in the production of emitter X. This can be an issue for OFeOH as produced by Reaction R6. On the other hand, the seasonal variability of the 1,510 nm emission is reminiscent of the one expected for atomic hydrogen 20 https://doi.org/10.5194/egusphere-2023-2087\nPreprint. Discussion started: 28 September 2023\nc⃝Author(s) 2023. CC BY 4.0 License. 0\n100\n200\n300\nDay of year\n4\n2\n0\n2\n4\nLocal time [h]\n(a)\nNMF comp. 1 indicating X(NIR)\n0\n100\n200\n300\nDay of year\n4\n2\n0\n2\n4\nLocal time [h]\n(b)\nNMF comp. 2 indicating FeO(VIS)\n0\n100\n200\n300\nDay of year\n4\n2\n0\n2\n4\nLocal time [h]\n(c)\nNMF comp. 3 indicating O2(NIR)\n0\n100\n200\n300\nDay of year\n4\n2\n0\n2\n4\nLocal time [h]\n(d)\nNMF comp. 4 indicating O2(UVB)\n0.6\n0.7\n0.8\n0.9\n1.0\n1.1\n1.2\n1.3\n1.4\n1.5\n1.6\n1.7\n1.8\n1.9\nRelative scaling factor\n0.6\n0.7\n0.8\n0.9\n1.0\n1.1\n1.2\n1.3\n1.4\n1.5\n1.6\n1.7\nRelative scaling factor\n0.6\n0.7\n0.8\n0.9\n1.0\n1.1\n1.2\n1.3\n1.4\n1.5\n1.6\n1.7\n1.8\n1.9\n2.0\nRelative scaling factor\n0.6\n0.7\n0.8\n0.9\n1.0\n1.1\n1.2\n1.3\nRelative scaling factor\nFigure 5. Climatologies of the scaling factors of the four continuum components X(NIR) (a), FeO(VIS) (b), O2(NIR) (c), and O2(UVB)\n(d) from non-negative matrix factorisation shown in Fig. 3a. Consistent with Fig. 4, the climatologies are also based on a sample of 7,971\n30 min bins and a minimum subsample size of 200. 0\n100\n200\n300\nDay of year\n4\n2\n0\n2\n4\nLocal time [h]\n(a)\nNMF comp. 1 indicating X(NIR)\n0.6\n0.7\n0.8\n0.9\n1.0\n1.1\n1.2\n1.3\n1.4\n1.5\n1.6\n1.7\n1.8\n1.9\nRelative scaling factor 0\n100\n200\n300\nDay of year\n4\n2\n0\n2\n4\nLocal time [h]\n(b)\nNMF comp. 2 indicating FeO(VIS)\n0.6\n0.7\n0.8\n0.9\n1.0\n1.1\n1.2\n1.3\n1.4\n1.5\n1.6\n1.7\nRelative scaling factor Local time [h] Local time [h] 0\n100\n200\n300\nDay of year\n4\n2\n0\n2\n4\nLocal time [h]\n(c)\nNMF comp. 3 indicating O2(NIR)\n0.6\n0.7\n0.8\n0.9\n1.0\n1.1\n1.2\n1.3\n1.4\n1.5\n1.6\n1.7\n1.8\n1.9\n2.0\nRelative scaling factor 0\n100\n200\n300\nDay of year\n4\n2\n0\n2\n4\nLocal time [h]\n(d)\nNMF comp. 4 indicating O2(UVB)\n0.6\n0.7\n0.8\n0.9\n1.0\n1.1\n1.2\n1.3\nRelative scaling factor NMF comp. 3 indicating O2(NIR) NMF comp. 4 indicating O2(UVB) Local time [h] Figure 5. Climatologies of the scaling factors of the four continuum components X(NIR) (a), FeO(VIS) (b), O2(NIR) (c), and O2(UVB)\n(d) from non-negative matrix factorisation shown in Fig. 3a. Consistent with Fig. 4, the climatologies are also based on a sample of 7,971\n30 min bins and a minimum subsample size of 200. (H) (Mlynczak et al., 2014), which could be an argument for the participation of H in the production of the radiating molecule. Interestingly, this is fulfilled by the HO2 production process given in Reaction R9. Based on our WACCM simulations, we\n5\ndiscuss this topic in Sect. 4.2 in more detail. Interestingly, this is fulfilled by the HO2 production process given in Reaction R9. The decrease of the intensity with increasing LT might complicate the dynamical separation\nof O2(NIR) and X(NIR), which could contribute to the uncertainties around the O2(a-X)(0-0) band at 1,270 nm in Fig. 3. The correlation of the FeO(VIS) component and the 595 nm peak is weaker (+0.926). The\n560\nmain difference in the 2D climatologies is a lower intensity for the NMF component in the evening compared to the morning\n(Fig. 5b). This might be caused by the decreasing nocturnal trend in the stronger X(NIR) component, which partly overlaps\nwith FeO(VIS). Thus, the NMF obviously led to more different climatologies than the direct feature measurements showed. The separation of the two O2-related components probably succeeded due to a relatively weak SAO in the climatologies The separation of the two O2 related components probably succeeded due to a relatively weak SAO in the climatologies\n(panels (c) and (d) of Fig. 5). The climatological patterns are more reminiscent of the case for O (Noll et al., 2019) with\n565\ntidal features that are also visible in OH intensity climatologies (Noll et al., 2023b). This similarity is reasonable as the\nnocturnal production process of these bands is probably related to O recombination (e.g., Slanger and Copeland, 2003) as\nwell as collisions of O2 with excited oxygen atoms in the case of the near-IR emissions (Kalogerakis, 2019). Nevertheless,\nthe correlation coefficient for O2(UVB) and O2(NIR) is −0.22. The largest discrepancy is present in the evening, when the (panels (c) and (d) of Fig. 5). The climatological patterns are more reminiscent of the case for O (Noll et al., 2019) with\n565\ntidal features that are also visible in OH intensity climatologies (Noll et al., 2023b). This similarity is reasonable as the\nnocturnal production process of these bands is probably related to O recombination (e.g., Slanger and Copeland, 2003) as\nwell as collisions of O2 with excited oxygen atoms in the case of the near-IR emissions (Kalogerakis, 2019). Nevertheless,\nthe correlation coefficient for O2(UVB) and O2(NIR) is −0.22. The largest discrepancy is present in the evening, when the intensity of O2(NIR) steeply decreases due to the decay of the O2(a1∆g) population produced by O3 photolysis at daytime\n570\n(e.g., Noll et al., 2016), whereas the intensity of O2(UVB) that is related to electronic states without such a pathway is relatively\nlow. Interestingly, the excess O2(a1∆g) population seems to show an SAO which is consistent with a dependence on the O3\ndensity as in the case of FeO(VIS). Based on our WACCM simulations, we\n545\ndiscuss this topic in Sect. 4.2 in more detail. The two discussed features only cover a small part of the corresponding NMF-related component spectra. In the studied\nwavelength ranges (see Fig. 3), FeO(VIS) and X(NIR) indicate mean intensities of about 2.5 and 9.9 kR (explaining about\n18 and 69% of the mean spectrum), i.e. the features at 595 and 1,510 nm have a contribution of about 1.1 and 13.8%. These 21 https://doi.org/10.5194/egusphere-2023-2087\nPreprint. Discussion started: 28 September 2023\nc⃝Author(s) 2023. CC BY 4.0 License. percentages further decrease if the radiance in the spectral gaps is roughly approximated by a simple linear interpolation, which\n550\nresults in about 2.9 and 11.8 kR for the two components. In particular, the X(NIR) intensity could further increase as the flux\nis still relatively high at the upper wavelength limit of 1,780 nm. Apart from the limited wavelength coverage, these values are\naffected by uncertainties in the separation of the component spectra from other contributions. Nevertheless, the basic structure\nof the FeO(VIS) and X(NIR) components appears to be realistic. The 2D climatology of the 595 nm feature is well correlated percentages further decrease if the radiance in the spectral gaps is roughly approximated by a simple linear interpolation, which\n550\nresults in about 2.9 and 11.8 kR for the two components. In particular, the X(NIR) intensity could further increase as the flux\nis still relatively high at the upper wavelength limit of 1,780 nm. Apart from the limited wavelength coverage, these values are\naffected by uncertainties in the separation of the component spectra from other contributions. Nevertheless, the basic structure\nof the FeO(VIS) and X(NIR) components appears to be realistic. The 2D climatology of the 595 nm feature is well correlated (\n)\n(\n)\np\npp\ngy\nwith the one of the underlying continuum (r = +0.961). Moreover, the integrated flux between minima at 679 and 927 nm\n555\n(Fig. 2) shows a high r of +0.974. For the 1,510 nm feature, the r values are even above +0.99 if they are calculated for the\ncontinuum below the feature or the secondary peak at 1,620 nm measured between 1,596 and 1,662 nm. Even in the continuum\nbelow the O2(a-X)(1-0) band at about 1,080 nm, r is still quite high with +0.966. Although partly forced by the wavelength\nweighting of our NMF procedure, an r of +1.000 is remarkable for the correlation of the X(NIR) component (Fig. 5a) and\nh\n1 510\nk (Fi\n4b) Th\nl i\nf h\nF O(VIS)\nd h\n595\nk i\nk\n( 0 926) Th with the one of the underlying continuum (r = +0.961). Moreover, the integrated flux between minima at 679 and 927 nm\n555\n(Fig. 2) shows a high r of +0.974. For the 1,510 nm feature, the r values are even above +0.99 if they are calculated for the\ncontinuum below the feature or the secondary peak at 1,620 nm measured between 1,596 and 1,662 nm. Even in the continuum\nbelow the O2(a-X)(1-0) band at about 1,080 nm, r is still quite high with +0.966. Although partly forced by the wavelength\nweighting of our NMF procedure, an r of +1.000 is remarkable for the correlation of the X(NIR) component (Fig. 5a) and with the one of the underlying continuum (r = +0.961). Moreover, the integrated flux between minima at 679 and 927 nm\n555\n(Fig. 2) shows a high r of +0.974. For the 1,510 nm feature, the r values are even above +0.99 if they are calculated for the\ncontinuum below the feature or the secondary peak at 1,620 nm measured between 1,596 and 1,662 nm. Even in the continuum\nbelow the O2(a-X)(1-0) band at about 1,080 nm, r is still quite high with +0.966. Although partly forced by the wavelength\nweighting of our NMF procedure, an r of +1.000 is remarkable for the correlation of the X(NIR) component (Fig. 5a) and the 1,510 nm peak (Fig. 4b). The correlation of the FeO(VIS) component and the 595 nm peak is weaker (+0.926). The\n560\nmain difference in the 2D climatologies is a lower intensity for the NMF component in the evening compared to the morning\n(Fig. 5b). This might be caused by the decreasing nocturnal trend in the stronger X(NIR) component, which partly overlaps\nwith FeO(VIS). Thus, the NMF obviously led to more different climatologies than the direct feature measurements showed. The separation of the two O2-related components probably succeeded due to a relatively weak SAO in the climatologies the 1,510 nm peak (Fig. 4b). The correlation of the FeO(VIS) component and the 595 nm peak is weaker (+0.926). The\n560\nmain difference in the 2D climatologies is a lower intensity for the NMF component in the evening compared to the morning\n(Fig. 5b). This might be caused by the decreasing nocturnal trend in the stronger X(NIR) component, which partly overlaps\nwith FeO(VIS). Thus, the NMF obviously led to more different climatologies than the direct feature measurements showed. The separation of the two O2-related components probably succeeded due to a relatively weak SAO in the climatologies the 1,510 nm peak (Fig. 4b). 3.4\nSolar cycle effect\n575 As the X-shooter data set covers 10 years between October 2009 and September 2019, the resulting continuum features can\nalso be investigated with respect to the solar cycle. As already discussed in Sect. 3.3, we also calculated 2D climatologies for\nthe SCE. With respect to the features at 595 and 1,510 nm, it turned out that the structures in these climatologies are relatively\nuncertain. Based on the largest analysed sample for the FeO main peak with 12,785 bins, Fig. 6a indicates the largest positive As the X-shooter data set covers 10 years between October 2009 and September 2019, the resulting continuum features can\nalso be investigated with respect to the solar cycle. As already discussed in Sect. 3.3, we also calculated 2D climatologies for\nthe SCE. With respect to the features at 595 and 1,510 nm, it turned out that the structures in these climatologies are relatively\nuncertain. Based on the largest analysed sample for the FeO main peak with 12,785 bins, Fig. 6a indicates the largest positive\nSCE values around the austral summer solstice and in the austral winter The lowest (and possibly negative) values appear to\n580 As the X-shooter data set covers 10 years between October 2009 and September 2019, the resulting continuum features can\nalso be investigated with respect to the solar cycle. As already discussed in Sect. 3.3, we also calculated 2D climatologies for\nthe SCE. With respect to the features at 595 and 1,510 nm, it turned out that the structures in these climatologies are relatively\nuncertain. Based on the largest analysed sample for the FeO main peak with 12,785 bins, Fig. 6a indicates the largest positive SCE values around the austral summer solstice and in the austral winter. The lowest (and possibly negative) values appear to\n580\nbe present around March. Figure 6b for the sample with 17,482 bins of the 1,510 nm feature shows possible maxima in July\nand November and a minimum in austral autumn, which could possibly be negative. SCE values around the austral summer solstice and in the austral winter. The lowest (and possibly negative) values appear to\n580\nbe present around March. Figure 6b for the sample with 17,482 bins of the 1,510 nm feature shows possible maxima in July\nand November and a minimum in austral autumn, which could possibly be negative. 22 https://doi.org/10.5194/egusphere-2023-2087\nPreprint. Discussion started: 28 September 2023\nc⃝Author(s) 2023. CC BY 4.0 License. 3.4\nSolar cycle effect\n575 In any case, the SCEs for both continuum features are relatively small, which may explain the relatively high\nuncertainties in the discussed climatological patterns. In contrast, the O2-related features in the continuum show large effects\nof about +40 % per 100 sfu (e.g., using the ranges 335 to 388 nm and 1,254 to 1,297 nm for the NMF-related sample). For and +7.5 ± 1.4 % per 100 sfu. For the individual measurements, we obtain +4.0 ± 1.2 and +6.7 ± 0.9 % per 100 sfu. The\n585\ndifferences between these results show the uncertainties related to the sample size and the climatological weighting of the\ndata points. In any case, the SCEs for both continuum features are relatively small, which may explain the relatively high\nuncertainties in the discussed climatological patterns. In contrast, the O2-related features in the continuum show large effects\nof about +40 % per 100 sfu (e.g., using the ranges 335 to 388 nm and 1,254 to 1,297 nm for the NMF-related sample). For OH, the X-shooter data set indicates line-specific effective SCEs between +8 and +23 % per 100 sfu (Noll et al., 2023b). On\n590\nthe other hand, chemiluminescent 770 nm potassium (K) emission measured between April 2000 and March 2015 at Cerro\nParanal in spectra of the Ultraviolet and Visual Echelle Spectrograph (UVES; Dekker et al., 2000) resulted in a negative effect\nof −7.4 ± 1.3 % per 100 sfu (Noll et al., 2019). This seems to be related to an even more negative SCE for the K column\ndensity, as shown by WACCM simulations for the long period from 1955 to 2005 (Dawkins et al., 2016). For the latitude range from 0 to 30◦S, about −14.4 % per 100 sfu are given. The same study also provides −4.7 % per 100 sfu for the Fe column\n595\ndensity. Considering that Fe and K react with O3 to form monoxides that are directly (FeO) or indirectly (KO with subsequent\nreaction with O) the basis for the chemiluminescence, the difference in the SCEs for the column density of about 10% would\nsupport a slightly positive value for FeO nightglow, which would be consistent with our measurements (see also Sect. 4.2). from 0 to 30◦S, about −14.4 % per 100 sfu are given. The same study also provides −4.7 % per 100 sfu for the Fe column\n595\ndensity. 3.4\nSolar cycle effect\n575 0\n100\n200\n300\nDay of year\n4\n2\n0\n2\n4\nLocal time [h]\n(a)\nFeature at 595 nm indicating FeO\n0\n100\n200\n300\nDay of year\n4\n2\n0\n2\n4\nLocal time [h]\n(b)\nFeature at 1,510 nm indicating X\n0.2\n0.1\n0.0\n0.1\n0.2\n0.3\n0.4\nRelative intensity change per 100 sfu\n0.2\n0.1\n0.0\n0.1\n0.2\nRelative intensity change per 100 sfu\nFigure 6. Climatologies of the solar cycle effect for the continuum features at (a) 595 nm and (b) 1,510 nm. For each grid point (see caption\nof Fig. 4), the given value indicates the change of the intensity relative to the corresponding mean for an increase of the solar radio flux\naveraged for 27 days by 100 sfu. The climatologies were calculated for (a) 12,785 and (b) 17,482 30 min bins and the minimum sample size\nfor each grid point was 400 (cf. Fig. 4). 0\n100\n200\n300\nDay of year\n4\n2\n0\n2\n4\nLocal time [h]\n(a)\nFeature at 595 nm indicating FeO\n0.2\n0.1\n0.0\n0.1\n0.2\n0.3\n0.4 0\n100\n200\n300\nDay of year\n4\n2\n0\n2\n4\nLocal time [h]\n(b)\nFeature at 1,510 nm indicating X\n0.2\n0.1\n0.0\n0.1\n0.2\nRelative intensity change per 100 sfu Figure 6. Climatologies of the solar cycle effect for the continuum features at (a) 595 nm and (b) 1,510 nm. For each grid point (see caption\nof Fig. 4), the given value indicates the change of the intensity relative to the corresponding mean for an increase of the solar radio flux\naveraged for 27 days by 100 sfu. The climatologies were calculated for (a) 12,785 and (b) 17,482 30 min bins and the minimum sample size\nfor each grid point was 400 (cf. Fig. 4). The resulting effective SCEs derived from the averaging of the 595 and 1,510 nm climatologies are +10.7 and +4.2 % per\n100 sfu, respectively. If these percentages are directly derived from the intensities of the 30 min bins, the results are +8.1±1.5 ,\np\ny\np\ng\ny\n,\n+\nand +7.5 ± 1.4 % per 100 sfu. For the individual measurements, we obtain +4.0 ± 1.2 and +6.7 ± 0.9 % per 100 sfu. The\n585\ndifferences between these results show the uncertainties related to the sample size and the climatological weighting of the\ndata points. https://doi.org/10.5194/egusphere-2023-2087\nPreprint. Discussion started: 28 September 2023\nc⃝Author(s) 2023. CC BY 4.0 License. 3.5\nEffective emission heights The selection criteria include a minimum exposure time of 3 min, the requirement of positive values\nfor the feature and the underlying continuum (for the latter also an upper limit of 18 R nm−1), and the rejection of additional 88 for the OH-related sample. However, the sample size can easily be increased to 92 bins if the bin filling threshold is set\n615\nslightly lower to 8 min. Then, only three bins of the original OH-related sample are lost, all of them present in the evening. As the 595 nm feature is distinctly weaker and the smaller sample of VIS-arm spectra has to be used, the final sample just\ncomprises 125 spectra. The selection criteria include a minimum exposure time of 3 min, the requirement of positive values\nfor the feature and the underlying continuum (for the latter also an upper limit of 18 R nm−1), and the rejection of additional spectra contaminated by the astronomical targets (identification by visual inspection). Then, the binning results in 63 bins if a\n620\nminimum filling of 8 min is also required (otherwise only 57 bins). The resulting bin-related intensities normalised by the sample mean were fitted as described in Noll et al. (2022a). The fit\nformula f(t,tLT) = c(tLT)\n\u0012\na(tLT)cos\n\u0012\n2π\n\u0012 t\nT −ϕ\n\u0013\u0013\n+ 1\n\u0013\n, os\n\u0012\n2π\n\u0012 t\nT −ϕ\n\u0013\u0013\n+ 1\n\u0013\n,\n(1) (1) contains a cosine with the time t relative to the period T minus a reference phase ϕ for 30 January 2017 12:00 LT. The cosine\n625\nis multiplied by an amplitude c·a and a constant c (which can also be considered as a scaling factor for the mean) is added to\nthis term. As T was set to 44 h, i.e. the optimum derived from the OH data analysed by Noll et al. (2022a), the final fitting\nparameters were ϕ, c, and, a, the latter being the amplitude of the cosine. As the OH time series showed a strong dependence\nof the amplitude c·a on local time, LT intervals with a length of 1 h centred on tLT were fitted separately. First, this was done contains a cosine with the time t relative to the period T minus a reference phase ϕ for 30 January 2017 12:00 LT. 3.4\nSolar cycle effect\n575 Considering that Fe and K react with O3 to form monoxides that are directly (FeO) or indirectly (KO with subsequent\nreaction with O) the basis for the chemiluminescence, the difference in the SCEs for the column density of about 10% would\nsupport a slightly positive value for FeO nightglow, which would be consistent with our measurements (see also Sect. 4.2). 23 3.5\nEffective emission heights Using the X-shooter NIR-arm data set, Noll et al. (2022a) investigated eight nights in 2017 and seven nights in 2019 with\n600\nrespect to the signatures of passing quasi-two-day waves (Q2DWs) in the intensities of OH emission lines. Q2DWs are only\npresent for a few weeks in austral summer but constitute the strongest wave phenomenon at low southern latitudes (Ern et al.,\n2013; Gu et al., 2019; Tunbridge et al., 2011). The particularly strong wave between 26 January and 3 February 2017 was used\nto estimate the effective emission heights of the selected 298 OH lines based on fits of wave phases for a most likely period ofi 44 h. Apart from the line intensities from the X-shooter data, the study also used OH emission profiles from TIMED/SABER\n605\n(Russell et al., 1999) for the derivation of the required phase–height relation. In order to better understand the emission features at 595 and 1,510 nm, which are obviously representative of a large fraction\nof the nightglow continuum (Sect. 3.3), we also attempted to derive wave phases and the related emission heights for these\ntwo features. For a good time coverage during the crucial eight nights, we had to further relax the selection criteria described 44 h. Apart from the line intensities from the X-shooter data, the study also used OH emission profiles from TIMED/SABER\n605\n(Russell et al., 1999) for the derivation of the required phase–height relation. In order to better understand the emission features at 595 and 1,510 nm, which are obviously representative of a large fraction\nof the nightglow continuum (Sect. 3.3), we also attempted to derive wave phases and the related emission heights for these\ntwo features. For a good time coverage during the crucial eight nights, we had to further relax the selection criteria described 44 h. Apart from the line intensities from the X-shooter data, the study also used OH emission profiles from TIMED/SABER\n605\n(Russell et al., 1999) for the derivation of the required phase–height relation. In order to better understand the emission features at 595 and 1,510 nm, which are obviously representative of a large fraction\nf th\ni ht l\nti\n(S\nt 3 3)\nl\ntt\nt d t\nd i\nh\nd th\nl t d\ni i\nh i ht f\nth in Sect. 3.3. Like the investigated OH lines, the 1,510 nm feature is covered by the NIR arm. 3.5\nEffective emission heights With a minimum exposure\n610\ntime of 1 min and only intensities between 200 and 4,800 R, 265 of 388 observations remained in the sample. We manually\nchecked every spectrum and rejected 13 additional spectra with suspicious astronomical targets, i.e. the final sample comprises\n252 intensity measurements. Consistent with Noll et al. (2022a), the intensities of 30 min bins were calculated. If the default\nlower limit of 10 min for the bin filling is used, the resulting sample comprises 82 bins, which is lower than the maximum of in Sect. 3.3. Like the investigated OH lines, the 1,510 nm feature is covered by the NIR arm. With a minimum exposure\n610\ntime of 1 min and only intensities between 200 and 4,800 R, 265 of 388 observations remained in the sample. We manually\nchecked every spectrum and rejected 13 additional spectra with suspicious astronomical targets, i.e. the final sample comprises\n252 intensity measurements. Consistent with Noll et al. (2022a), the intensities of 30 min bins were calculated. If the default\nlower limit of 10 min for the bin filling is used, the resulting sample comprises 82 bins, which is lower than the maximum of 88 for the OH-related sample. However, the sample size can easily be increased to 92 bins if the bin filling threshold is set\n615\nslightly lower to 8 min. Then, only three bins of the original OH-related sample are lost, all of them present in the evening. As the 595 nm feature is distinctly weaker and the smaller sample of VIS-arm spectra has to be used, the final sample just\ncomprises 125 spectra. The selection criteria include a minimum exposure time of 3 min, the requirement of positive values\nfor the feature and the underlying continuum (for the latter also an upper limit of 18 R nm−1), and the rejection of additional 88 for the OH-related sample. However, the sample size can easily be increased to 92 bins if the bin filling threshold is set\n615\nslightly lower to 8 min. Then, only three bins of the original OH-related sample are lost, all of them present in the evening. As the 595 nm feature is distinctly weaker and the smaller sample of VIS-arm spectra has to be used, the final sample just\ncomprises 125 spectra. 4\n2\n0\n2\n4\nDeviation from 30 Jan 2017 12:00 LT [days]\n0.5\n1.0\n1.5\nNormalised intensity\nX-shooter: Q2DW in 2017 (26 Jan - 3 Feb, 02:00-03:00 LT)\nFeO(595nm) model (a = 0.337, = 0.322, T = 44h)\nX(1510nm) model (a = 0.470, = 0.485, T = 44h)\nFeO(595nm) obs.\nX(1510nm) obs.\nFigure 7. Relative intensities of the features at 595 nm (blue) and 1,510 nm (red) for the 14 30 min bins in the interval between 02:00 and\n03:00 LT between 26 January and 3 February 2017 and the related fit of a cosine with a period T of 44 h (solid curves with small dots for\nthe effective times of the bins). Measurements and models are given relative to the fitted scaling factor c. The remaining fit parameters a\n(amplitude) and ϕ (phase) are provided in the plot.\nhttps://doi.org/10.5194/egusphere-2023-2087\nPreprint. Discussion started: 28 September 2023\nc⃝Author(s) 2023. CC BY 4.0 License. https://doi.org/10.5194/egusphere-2023-2087\nPreprint. Discussion started: 28 September 2023\nc⃝Author(s) 2023. CC BY 4.0 License. 4\n2\n0\n2\n4\nDeviation from 30 Jan 2017 12:00 LT [days]\n0.5\n1.0\n1.5\nNormalised intensity\nX-shooter: Q2DW in 2017 (26 Jan - 3 Feb, 02:00-03:00 LT)\nFeO(595nm) model (a = 0.337, = 0.322, T = 44h)\nX(1510nm) model (a = 0.470, = 0.485, T = 44h)\nFeO(595nm) obs. X(1510nm) obs. Figure 7. Relative intensities of the features at 595 nm (blue) and 1,510 nm (red) for the 14 30 min bins in the interval between 02:00 and\n03:00 LT between 26 January and 3 February 2017 and the related fit of a cosine with a period T of 44 h (solid curves with small dots for\nthe effective times of the bins). Measurements and models are given relative to the fitted scaling factor c. The remaining fit parameters a\n(amplitude) and ϕ (phase) are provided in the plot. 4\n2\n0\n2\n4\nDeviation from 30 Jan 2017 12:00 LT [days]\n0.5\n1.0\n1.5\nNormalised intensity\nX-shooter: Q2DW in 2017 (26 Jan - 3 Feb, 02:00-03:00 LT)\nFeO(595nm) model (a = 0.337, = 0.322, T = 44h)\nX(1510nm) model (a = 0.470, = 0.485, T = 44h)\nFeO(595nm) obs. X(1510nm) obs. 4\n2\n0\n2\n4\nDeviation from 30 Jan 2017 12:00 LT [days]\n0.5\n1.0\n1.5\nNormalised intensity\nX-shooter: Q2DW in 2017 (26 Jan - 3 Feb, 02:00-03:00 LT)\nFeO(595nm) model (a = 0.337, = 0.322, T = 44h)\nX(1510nm) model (a = 0.470, = 0.485, T = 44h)\nFeO(595nm) obs. X(1510nm) obs. Figure 7. Relative intensities of the features at 595 nm (blue) and 1,510 nm (red) for the 14 30 min bins in the interval between 02:00 and\n03:00 LT between 26 January and 3 February 2017 and the related fit of a cosine with a period T of 44 h (solid curves with small dots for\nthe effective times of the bins). Measurements and models are given relative to the fitted scaling factor c. The remaining fit parameters a\n(amplitude) and ϕ (phase) are provided in the plot. For the derivation of the phase, only reliable LT intervals with a good time coverage and small phase uncertainties should be\nused. Noll et al. (2022a) selected four to five LT hours depending on the line. 3.5\nEffective emission heights The cosine\n625\nis multiplied by an amplitude c·a and a constant c (which can also be considered as a scaling factor for the mean) is added to\nthis term. As T was set to 44 h, i.e. the optimum derived from the OH data analysed by Noll et al. (2022a), the final fitting\nparameters were ϕ, c, and, a, the latter being the amplitude of the cosine. As the OH time series showed a strong dependence\nof the amplitude c·a on local time, LT intervals with a length of 1 h centred on tLT were fitted separately. First, this was done for the derivation of the optimum phase, which represents the average for the selected LT hours weighted by the inverse of the\n630\nphase uncertainty. In a second step, the phase ϕ was fixed and the LT-dependent parameters c and a were fitted. 24 4\n2\n0\n2\n4\nDeviation from 30 Jan 2017 12:00 LT [days]\n0.5\n1.0\n1.5\nNormalised intensity\nX-shooter: Q2DW in 2017 (26 Jan - 3 Feb, 02:00-03:00 LT)\nFeO(595nm) model (a = 0.337, = 0.322, T = 44h)\nX(1510nm) model (a = 0.470, = 0.485, T = 44h)\nFeO(595nm) obs. X(1510nm) obs. Figure 7. Relative intensities of the features at 595 nm (blue) and 1,510 nm (red) for the 14 30 min bins in the interval between 02:00 and\n03:00 LT between 26 January and 3 February 2017 and the related fit of a cosine with a period T of 44 h (solid curves with small dots for\nthe effective times of the bins). Measurements and models are given relative to the fitted scaling factor c. The remaining fit parameters a\n(amplitude) and ϕ (phase) are provided in the plot. https://doi.org/10.5194/egusphere-2023-2087\nPreprint. Discussion started: 28 September 2023\nc⃝Author(s) 2023. CC BY 4.0 License. 4\n2\n0\n2\n4\nDeviation from 30 Jan 2017 12:00 LT [days]\n0.5\n1.0\n1.5\nNormalised intensity\nX-shooter: Q2DW in 2017 (26 Jan - 3 Feb, 02:00-03:00 LT)\nFeO(595nm) model (a = 0.337, = 0.322, T = 44h)\nX(1510nm) model (a = 0.470, = 0.485, T = 44h)\nFeO(595nm) obs.\nX(1510nm) obs.\nFigure 7. Relative intensities of the features at 595 nm (blue) and 1,510 nm (red) for the 14 30 min bins in the interval between 02:00 and\n03:00 LT between 26 January and 3 February 2017 and the related fit of a cosine with a period T of 44 h (solid curves with small dots for\nthe effective times of the bins). Measurements and models are given relative to the fitted scaling factor c. The remaining fit parameters a\n(amplitude) and ϕ (phase) are provided in the plot.\nhttps://doi.org/10.5194/egusphere-2023-2087\nPreprint. Discussion started: 28 September 2023\nc⃝Author(s) 2023. CC BY 4.0 License. The evening data were always rejected because\nof low wave amplitudes and a relatively small number of bins. For the 1,510 nm feature, the extended sample with 92 bins\nincludes the same 39 bins between 01:00 and 04:00 LT that were also considered for the OH-related fits. In the case of the\n635\n595 nm feature, the sample with 63 entries shows 38 bins in this range. Alternatively, the fits can be restricted to the interval\nbetween 02:00 and 03:00 LT, where all samples include the same (and maximum number of) 14 bins. For the latter case, Fig. 7\nshows the measured intensities and the resulting fits divided by c for both continuum features. This normalisation allows one to\ndirectly read the amplitude a from the plotted wave fit. The amplitude is higher for the 1,510 nm feature (0.47 vs. 0.34). This feature also shows a later phase (0.485 vs. 0.322 relative to T). Concerning the fit quality, it is clearly visible that the deviations\n640\nfor the strong 1,510 nm feature are distinctly smaller than in the case of the 595 nm feature. The root mean square results\nin 0.14 compared to 0.23. Nevertheless, the phase for the FeO main peak does not seem to be less robust since the standard\ndeviation for the independent fits of the three intervals between 01:00 and 04:00 LT indicates 0.033 compared to 0.042 for the\npeak at 1,510 nm. The mean phase from these intervals is slightly higher in both cases (0.489 and 0.339). For both continuum features, Fig. 8 shows the LT-dependent amplitudes c·a and scaling constants c for an optimum phase ϕ\n645\nthat is only based on the interval centred on 02:30 LT. For 595 nm in (a), there were only sufficient data (at least seven bins)\nfor a fit in the LT range between 23:00 and 04:00 LT. Hence, the situation in the evening remains unclear. For the covered time\nrange, the amplitude relative to the mean is about 0.2 with a peak of 0.32 for 02:00 to 03:00 LT, i.e. the decisive interval for\nthe phase derivation. The constant c is around 1, which indicates that there was not a clear trend of the mean with local time. For both continuum features, Fig. 4\n2\n0\n2\n4\nDeviation from 30 Jan 2017 12:00 LT [days]\n0.5\n1.0\n1.5\nNormalised intensity\nX-shooter: Q2DW in 2017 (26 Jan - 3 Feb, 02:00-03:00 LT)\nFeO(595nm) model (a = 0.337, = 0.322, T = 44h)\nX(1510nm) model (a = 0.470, = 0.485, T = 44h)\nFeO(595nm) obs.\nX(1510nm) obs.\nFigure 7. Relative intensities of the features at 595 nm (blue) and 1,510 nm (red) for the 14 30 min bins in the interval between 02:00 and\n03:00 LT between 26 January and 3 February 2017 and the related fit of a cosine with a period T of 44 h (solid curves with small dots for\nthe effective times of the bins). Measurements and models are given relative to the fitted scaling factor c. The remaining fit parameters a\n(amplitude) and ϕ (phase) are provided in the plot.\nhttps://doi.org/10.5194/egusphere-2023-2087\nPreprint. Discussion started: 28 September 2023\nc⃝Author(s) 2023. CC BY 4.0 License. 8 shows the LT-dependent amplitudes c·a and scaling constants c for an optimum phase ϕ\n645\nthat is only based on the interval centred on 02:30 LT. For 595 nm in (a), there were only sufficient data (at least seven bins)\nfor a fit in the LT range between 23:00 and 04:00 LT. Hence, the situation in the evening remains unclear. For the covered time\nrange, the amplitude relative to the mean is about 0.2 with a peak of 0.32 for 02:00 to 03:00 LT, i.e. the decisive interval for\nthe phase derivation. The constant c is around 1, which indicates that there was not a clear trend of the mean with local time. For both continuum features, Fig. 8 shows the LT-dependent amplitudes c·a and scaling constants c for an optimum phase ϕ\n645\nthat is only based on the interval centred on 02:30 LT. For 595 nm in (a), there were only sufficient data (at least seven bins)\nfor a fit in the LT range between 23:00 and 04:00 LT. Hence, the situation in the evening remains unclear. For the covered time\nrange, the amplitude relative to the mean is about 0.2 with a peak of 0.32 for 02:00 to 03:00 LT, i.e. the decisive interval for\nthe phase derivation. The constant c is around 1, which indicates that there was not a clear trend of the mean with local time. 25 https://doi.org/10.5194/egusphere-2023-2087\nPreprint. Discussion started: 28 September 2023\nc⃝Author(s) 2023. CC BY 4.0 License. 0.0\n0.5\n1.0\n1.5\nIntensity relative to mean\n(a)\nX-shooter: Q2DW in 2017 (26 Jan - 3 Feb) with T = 44 h\nFeO(595nm) ( = 0.322)\nOH(8-5)P2(1) ( = 0.321)\n3\n2\n1\n0\n1\n2\n3\nMean local time of bin [h]\n0.0\n0.5\n1.0\n1.5\nIntensity relative to mean\n(b)\nAmplitude ca\nConstant c\nX(1510nm) ( = 0.485)\nOH(2-0)P1(1) ( = 0.421)\nFigure 8. Amplitudes c·a (magenta solid curves with circles) and scaling constants c (magenta dotted curves with circles) relative to the\nsample mean as a function of local time (step size of 1 h; only intervals with sufficient data) for cosine fits of the Q2DW in 2017 with a\nperiod of 44 h based on intensity data of the (a) 595 nm (sample of 63 bins) and (b) 1,510 nm (sample of 92 bins) features. 4\n2\n0\n2\n4\nDeviation from 30 Jan 2017 12:00 LT [days]\n0.5\n1.0\n1.5\nNormalised intensity\nX-shooter: Q2DW in 2017 (26 Jan - 3 Feb, 02:00-03:00 LT)\nFeO(595nm) model (a = 0.337, = 0.322, T = 44h)\nX(1510nm) model (a = 0.470, = 0.485, T = 44h)\nFeO(595nm) obs.\nX(1510nm) obs.\nFigure 7. Relative intensities of the features at 595 nm (blue) and 1,510 nm (red) for the 14 30 min bins in the interval between 02:00 and\n03:00 LT between 26 January and 3 February 2017 and the related fit of a cosine with a period T of 44 h (solid curves with small dots for\nthe effective times of the bins). Measurements and models are given relative to the fitted scaling factor c. The remaining fit parameters a\n(amplitude) and ϕ (phase) are provided in the plot.\nhttps://doi.org/10.5194/egusphere-2023-2087\nPreprint. Discussion started: 28 September 2023\nc⃝Author(s) 2023. CC BY 4.0 License. The given phases\nare only based on fits of the interval between 02:00 and 03:00 LT. In addition, the corresponding curves for OH emission lines (green curves\nwith squares) with similar phases ϕ at 30 January 12:00 LT from the same fitting procedure are shown (cf. Noll et al., 2022a). 0.0\n0.5\n1.0\n1.5\nIntensity relative to mean\n(a)\nX-shooter: Q2DW in 2017 (26 Jan - 3 Feb) with T = 44 h\nFeO(595nm) ( = 0.322)\nOH(8-5)P2(1) ( = 0.321)\n3\n2\n1\n0\n1\n2\n3\nMean local time of bin [h]\n0.0\n0.5\n1.0\n1.5\nIntensity relative to mean\n(b)\nAmplitude ca\nConstant c\nX(1510nm) ( = 0.485)\nOH(2-0)P1(1) ( = 0.421) Figure 8. Amplitudes c·a (magenta solid curves with circles) and scaling constants c (magenta dotted curves with circles) relative to the\nsample mean as a function of local time (step size of 1 h; only intervals with sufficient data) for cosine fits of the Q2DW in 2017 with a\nperiod of 44 h based on intensity data of the (a) 595 nm (sample of 63 bins) and (b) 1,510 nm (sample of 92 bins) features. The given phases\nare only based on fits of the interval between 02:00 and 03:00 LT. In addition, the corresponding curves for OH emission lines (green curves\nwith squares) with similar phases ϕ at 30 January 12:00 LT from the same fitting procedure are shown (cf. Noll et al., 2022a). We compare these curves with those of an OH line with almost the same phase for the 02:30 LT interval. Note that the given ϕ\n650\nof 0.321 is slightly lower than the value of 0.328 in the data release of Noll et al. (2022b), which is based on several LT hours. The data for OH(8-5)P2(1) indicate a significantly larger maximum amplitude c·a of 0.71 (between 01:00 and 02:00 LT). Even\nif the different scaling factors are considered and only the cosine amplitudes a are compared (0.54 vs. 0.34 between 02:00 and\n03:00 LT), the impact of the Q2DW on OH lines appears to be stronger, which probably reveals dynamical differences if O3 reactions with Fe and H are compared. The remarkable decrease of the wave amplitude towards the beginning of the night is\n655\nnot covered by the data for the 595 nm feature. 4\n2\n0\n2\n4\nDeviation from 30 Jan 2017 12:00 LT [days]\n0.5\n1.0\n1.5\nNormalised intensity\nX-shooter: Q2DW in 2017 (26 Jan - 3 Feb, 02:00-03:00 LT)\nFeO(595nm) model (a = 0.337, = 0.322, T = 44h)\nX(1510nm) model (a = 0.470, = 0.485, T = 44h)\nFeO(595nm) obs.\nX(1510nm) obs.\nFigure 7. Relative intensities of the features at 595 nm (blue) and 1,510 nm (red) for the 14 30 min bins in the interval between 02:00 and\n03:00 LT between 26 January and 3 February 2017 and the related fit of a cosine with a period T of 44 h (solid curves with small dots for\nthe effective times of the bins). Measurements and models are given relative to the fitted scaling factor c. The remaining fit parameters a\n(amplitude) and ϕ (phase) are provided in the plot.\nhttps://doi.org/10.5194/egusphere-2023-2087\nPreprint. Discussion started: 28 September 2023\nc⃝Author(s) 2023. CC BY 4.0 License. Hence, a clear difference in the nocturnal trends in the joint LT range is not\nobvious. The 1,510 nm data in Fig. 8b show the entire OH-related night interval. The scaling factor c indicates a clear decrease in the\ncourse of the night, which implies that the average nocturnal behaviour as shown in the climatology in Fig. 4b is also relevant for the eight nights affected by the strong Q2DW. On the other hand, there is no detection of this wave except for the last three\n660\nintervals between 01:00 and 04:00 LT, which explains why only this range was useful for phase fits. There c·a is clearly larger for the eight nights affected by the strong Q2DW. On the other hand, there is no detection of this wave except for the last three\n660\nintervals between 01:00 and 04:00 LT, which explains why only this range was useful for phase fits. There c·a is clearly larger for the eight nights affected by the strong Q2DW. On the other hand, there is no detection of this wave except for the last three\n660\nintervals between 01:00 and 04:00 LT, which explains why only this range was useful for phase fits. There c·a is clearly larger 26 (2022a) also applied a correction that considers differences in the properties of the X-shooter\nand SABER samples. Based on a comparison of phase fits for the vertically integrated emission profiles for both OH-related\nSABER channels and the phases from the X-shooter data weighted for the transmission curves of these channels, a general\n675\nshift of the heights by −0.43 ± 0.13 km was performed. As the phases slightly change if only the LT interval between 02:00\nand 03:00 is used for their derivation as described above, we recalculated this shift and found about −0.79 km. As a result\n(which also considers the systematic decrease in ϕ), the mean effective emission height of all 298 OH lines was 0.10 km\nlower than given by Noll et al. (2022a). If the mean of the phases from the three intervals between 01:00 and 04:00 LT\nis used instead, the resulting offset of −0.45 km is very close to the original value and the mean height decreases just by\n680\n0.05 km. Hence, the change in the calculation of the optimum phase does not appear to have a significant effect on the resulting\nemission heights. Using the SABER-based phase–height relation and X-shooter-based phases for the 02:30 LT interval with the\nestimated corrections (i.e. −0.79 km and +0.1 km to be consistent with the published OH-related heights), we finally obtain\naltitudes of 85.2 and 80.0 km for the 595 and 1,510 nm features, respectively. From the comparison of heights for OH lines\nwith the same or similar ro-vibrational upper levels, Noll et al. (2022a) found uncertainties of several tenths of a kilometre. If\n685\nwe take the reported phase standard deviations of about 0.04 as derived from the LT hours between 01:00 and 04:00 for the\ntwo continuum features as an indicator, then the uncertainties might even be of the order of 1 km. Moreover, the use of the\nfull time series is important for the quality of the results. For example, the heights would be unrealistically high (near 100 km)\nif the first night was excluded from the fits. However, the difference between the values for both features would only slightly\nchange and rejecting the last night would only have a minor effect. 690 2.1 µm channel (Russell et al., 1999), which were taken around Cerro Paranal in the eight relevant nights at about 04:00 LT. However, the difference between the values for both features would only slightly\nh\nd\nj\ni\nh l\ni h\nld\nl h\ni\nff with the same or similar ro-vibrational upper levels, Noll et al. (2022a) found uncertainties of several tenths of a kilometre. If\n685\nwe take the reported phase standard deviations of about 0.04 as derived from the LT hours between 01:00 and 04:00 for the\ntwo continuum features as an indicator, then the uncertainties might even be of the order of 1 km. Moreover, the use of the\nfull time series is important for the quality of the results. For example, the heights would be unrealistically high (near 100 km)\nif the first night was excluded from the fits. However, the difference between the values for both features would only slightly with the same or similar ro-vibrational upper levels, Noll et al. (2022a) found uncertainties of several tenths of a kilometre. If\n685\nwe take the reported phase standard deviations of about 0.04 as derived from the LT hours between 01:00 and 04:00 for the\ntwo continuum features as an indicator, then the uncertainties might even be of the order of 1 km. Moreover, the use of the\nfull time series is important for the quality of the results. For example, the heights would be unrealistically high (near 100 km)\nif the first night was excluded from the fits. However, the difference between the values for both features would only slightly\nh\nd\nj\nti\nth l\nt i ht\nld\nl h\ni\nff\nt\n690 change and rejecting the last night would only have a minor effect. 690\nThe given altitudes are representative of the effective height for the strongest absolute variations related to the passing\nQ2DW. They differ from the effective mean height of the emission. Noll et al. (2022a) found that the average centroid emission\naltitude for the two OH-related SABER channels at Cerro Paranal (Noll et al., 2017) was about 4.07 km higher than in the\ncase of the corresponding variability-related heights. Significant discrepancies are not surprising in this context since the steep change and rejecting the last night would only have a minor effect. 690\nThe given altitudes are representative of the effective height for the strongest absolute variations related to the passing\nQ2DW. They differ from the effective mean height of the emission. Noll et al. The regression for the height range from 80 to 97 km resulted in an intercept of 3.027±0.049 at 0 km and a vertical wavelength\nof 31.74 ± 0.56 km. Noll et al. (2022a) also applied a correction that considers differences in the properties of the X-shooter\nand SABER samples. Based on a comparison of phase fits for the vertically integrated emission profiles for both OH-related SABER channels and the phases from the X-shooter data weighted for the transmission curves of these channels, a general\n675\nshift of the heights by −0.43 ± 0.13 km was performed. As the phases slightly change if only the LT interval between 02:00\nand 03:00 is used for their derivation as described above, we recalculated this shift and found about −0.79 km. As a result\n(which also considers the systematic decrease in ϕ), the mean effective emission height of all 298 OH lines was 0.10 km\nlower than given by Noll et al. (2022a). If the mean of the phases from the three intervals between 01:00 and 04:00 LT is used instead, the resulting offset of −0.45 km is very close to the original value and the mean height decreases just by\n680\n0.05 km. Hence, the change in the calculation of the optimum phase does not appear to have a significant effect on the resulting\nemission heights. Using the SABER-based phase–height relation and X-shooter-based phases for the 02:30 LT interval with the\nestimated corrections (i.e. −0.79 km and +0.1 km to be consistent with the published OH-related heights), we finally obtain\naltitudes of 85.2 and 80.0 km for the 595 and 1,510 nm features, respectively. From the comparison of heights for OH lines with the same or similar ro-vibrational upper levels, Noll et al. (2022a) found uncertainties of several tenths of a kilometre. If\n685\nwe take the reported phase standard deviations of about 0.04 as derived from the LT hours between 01:00 and 04:00 for the\ntwo continuum features as an indicator, then the uncertainties might even be of the order of 1 km. Moreover, the use of the\nfull time series is important for the quality of the results. For example, the heights would be unrealistically high (near 100 km)\nif the first night was excluded from the fits. https://doi.org/10.5194/egusphere-2023-2087\nPreprint. Discussion started: 28 September 2023\nc⃝Author(s) 2023. CC BY 4.0 License. than for the FeO main peak (like a in Fig. 7). We compare the 1,510 nm feature with OH(2-0)P1(1), which shows the highest\nphase for the studied OH lines. The nocturnal trend in c·a of this line seems to be roughly consistent, although the increase\nin the middle of the night starts earlier and is slower. These differences might be related to the remaining ∆ϕ of 0.064. The\ndiscrepancies between the absolute c·a of continuum feature and OH line appear to be mainly related to the different nocturnal\n665\nmean behaviour. The deviation of the 1,510 nm feature with respect to the cosine amplitude a is relatively small at the end of\nthe night (0.54 vs. 0.62 for 03:00 to 04:00 LT), i.e. the responses to the passing Q2DW appear to be comparable. The agreement\nin the nocturnal development of the amplitude also suggests that the high phase value for the 1,510 nm feature is realistic. 665 discrepancies between the absolute c·a of continuum feature and OH line appear to be mainly related to the different nocturnal\n665\nmean behaviour. The deviation of the 1,510 nm feature with respect to the cosine amplitude a is relatively small at the end of\nthe night (0.54 vs. 0.62 for 03:00 to 04:00 LT), i.e. the responses to the passing Q2DW appear to be comparable. The agreement\nin the nocturnal development of the amplitude also suggests that the high phase value for the 1,510 nm feature is realistic. As described by Noll et al. (2022a), the X-shooter-based reference phases of the Q2DW were converted into heights by\nusing the linear phase–height relation derived from altitude-dependent wave fits of 22 OH emission profiles in the SABER\n670 As described by Noll et al. (2022a), the X-shooter-based reference phases of the Q2DW were converted into heights by\nusing the linear phase–height relation derived from altitude-dependent wave fits of 22 OH emission profiles in the SABER\n670\n2.1 µm channel (Russell et al., 1999), which were taken around Cerro Paranal in the eight relevant nights at about 04:00 LT. The regression for the height range from 80 to 97 km resulted in an intercept of 3.027±0.049 at 0 km and a vertical wavelength\nof 31.74 ± 0.56 km. Noll et al. Modelling also suggests that the HO2 density maximises near 80 km (Makhlouf et al., 1995). Such altitudes were also obtained from nocturnal\n710\nmicrowave measurements of HO2, although the density peaks could also be several kilometres higher in the second half of the\nnight (Kreyling et al., 2013; Millán et al., 2015). Overall, the discussed candidates for emitter X appear to produce emission at\nheights consistent with our measurements. With our optimised WACCM simulations, we can discuss the height distributions\nmore quantitatively (see Sect. 4.2). suggests that the HO2 density maximises near 80 km (Makhlouf et al., 1995). Such altitudes were also obtained from nocturnal\n710\nmicrowave measurements of HO2, although the density peaks could also be several kilometres higher in the second half of the\nnight (Kreyling et al., 2013; Millán et al., 2015). Overall, the discussed candidates for emitter X appear to produce emission at\nheights consistent with our measurements. With our optimised WACCM simulations, we can discuss the height distributions\nmore quantitatively (see Sect. 4.2). (2022a) found that the average centroid emission\naltitude for the two OH-related SABER channels at Cerro Paranal (Noll et al., 2017) was about 4.07 km higher than in the\ncase of the corresponding variability-related heights. Significant discrepancies are not surprising in this context since the steep change and rejecting the last night would only have a minor effect. 690\nThe given altitudes are representative of the effective height for the strongest absolute variations related to the passing\nQ2DW. They differ from the effective mean height of the emission. Noll et al. (2022a) found that the average centroid emission\naltitude for the two OH-related SABER channels at Cerro Paranal (Noll et al., 2017) was about 4.07 km higher than in the\ncase of the corresponding variability-related heights. Significant discrepancies are not surprising in this context since the steep\ndecrease of the O number density in the lower parts of the OH emission profile (e.g., Smith et al., 2010) lead to stronger relative\n695\nintensity variations towards lower heights. Nevertheless, the amount of the discrepancy is quite high, which might be explained decrease of the O number density in the lower parts of the OH emission profile (e.g., Smith et al., 2010) lead to stronger relative\n695\nintensity variations towards lower heights. Nevertheless, the amount of the discrepancy is quite high, which might be explained decrease of the O number density in the lower parts of the OH emission profile (e.g., Smith et al., 2010) lead to stronger relative\n695\nintensity variations towards lower heights. Nevertheless, the amount of the discrepancy is quite high, which might be explained 27 4.1\nModel set-up For a better understanding of the X-shooter-based nightglow continuum and its variability as discussed in Sect. 3, we performed\ndedicated WACCM simulations. Community Earth System Model (CESM1, WACCM4) simulations with metal chemistry have\npreviously been used for combined observational and modelling studies of chemiluminescent FeO (Unterguggenberger et al., 2017) and K(42P) emissions (Noll et al., 2019) above Cerro Paranal. Here, we carried out modelling simulations from the\n720\nupdated version of CESM2 (WACCM6) with Na and Fe chemistry to check the FeO-related results and to explore potential\ncandidates for the new pseudo-continuum. CESM2 (WACCM6) is described by Gettelman et al. (2019). Na and Fe chemistry\nis updated based on Plane et al. (2015). The meteoric injection function (MIF) of Fe is from Carrillo-Sánchez et al. (2016),\nwhich is different to that used in Feng et al. (2013). We divided the Fe MIF by 5 to match lidar observations (e.g., Daly et al.,\n2020). Here, we use the specified dynamics version of WACCM6 nudged with NASA’s Modern Era Retrospective Analysis for\n725\nResearch and Application MERRA2 reanalysis data set (Molod et al., 2015). The model has a resolution of 1.9◦in latitude and 2017) and K(42P) emissions (Noll et al., 2019) above Cerro Paranal. Here, we carried out modelling simulations from the\n720\nupdated version of CESM2 (WACCM6) with Na and Fe chemistry to check the FeO-related results and to explore potential\ncandidates for the new pseudo-continuum. CESM2 (WACCM6) is described by Gettelman et al. (2019). Na and Fe chemistry\nis updated based on Plane et al. (2015). The meteoric injection function (MIF) of Fe is from Carrillo-Sánchez et al. (2016),\nwhich is different to that used in Feng et al. (2013). We divided the Fe MIF by 5 to match lidar observations (e.g., Daly et al., 2020). Here, we use the specified dynamics version of WACCM6 nudged with NASA’s Modern Era Retrospective Analysis for\n725\nResearch and Application MERRA2 reanalysis data set (Molod et al., 2015). The model has a resolution of 1.9◦in latitude and\n2.5◦in longitude and contains 88 vertical levels from the surface to 140 km. The simulation covers the period from 1 Jan 2003\nto 28 Dec 2014 (Universal Time). Monthly mean values of selected variables were calculated to save disc space. The model 2020). https://doi.org/10.5194/egusphere-2023-2087\nPreprint. Discussion started: 28 September 2023\nc⃝Author(s) 2023. CC BY 4.0 License. by the large amplitude of the Q2DW. It is questionable whether the effective emission heights for the continuum features need\nto be shifted by a similar value. However, as OH and FeO are produced by reactions that involve O3, it is not unlikely that\nthe impact of the O profile is similar for the 595 nm peak at least. Moreover, the variability-related height for FeO is well in\nthe range between 81.8 and 89.7 km found for the OH lines by Noll et al. (2022a). Thus, also assuming a shift of 4.07 km, we\n700\nwould obtain a centroid altitude of 89.2 km. This value appears to be close to other observations. For the FeO orange bands,\nEvans et al. (2010) measured with OSIRIS on Odin between 0 and 40◦S in April/May 2003 a centroid emission height slightly\n(up to 1 km) higher than the peak at about 87 km. Modelling of the FeO layer involving FeMOD (Gardner et al., 2005) at\n20◦N in March 2000 even resulted in a peak height of 89.5 km (Saran et al., 2011). Without a good knowledge of the chemistry related to the 1,510 nm feature, the difference between mean centroid and\n705\nQ2DW-related effective emission height is uncertain. If the OH-based shift is applied, the former would be about 84.1 km. This is possibly an upper limit and indicates that the emission layer appears to be lower than the OH and FeO layers. Previ-\nous simulations of the Fe-related layers with WACCM by Feng et al. (2013) showed that the densities of neutral molecular\nreservoir species such as FeO3, FeOH, and Fe(OH)2 can peak several kilometres lower than the FeO density. Modelling also Without a good knowledge of the chemistry related to the 1,510 nm feature, the difference between mean centroid and\n705\nQ2DW-related effective emission height is uncertain. If the OH-based shift is applied, the former would be about 84.1 km. This is possibly an upper limit and indicates that the emission layer appears to be lower than the OH and FeO layers. Previ-\nous simulations of the Fe-related layers with WACCM by Feng et al. (2013) showed that the densities of neutral molecular\nreservoir species such as FeO3, FeOH, and Fe(OH)2 can peak several kilometres lower than the FeO density. 4.1\nModel set-up Here, we use the specified dynamics version of WACCM6 nudged with NASA’s Modern Era Retrospective Analysis for\n725\nResearch and Application MERRA2 reanalysis data set (Molod et al., 2015). The model has a resolution of 1.9◦in latitude and\n2.5◦in longitude and contains 88 vertical levels from the surface to 140 km. The simulation covers the period from 1 Jan 2003\nto 28 Dec 2014 (Universal Time). Monthly mean values of selected variables were calculated to save disc space. The model 28 https://doi.org/10.5194/egusphere-2023-2087\nPreprint. Discussion started: 28 September 2023\nc⃝Author(s) 2023. CC BY 4.0 License. output was also sampled every half an hour for 24◦S and 70◦W near Cerro Paranal and interpolated in the height range from\n40 to 130 km with a step size of 1 km. The latter is used for the analysis in Sect. 4.2. 730 output was also sampled every half an hour for 24◦S and 70◦W near Cerro Paranal and interpolated in the height range from\n40 to 130 km with a step size of 1 km. The latter is used for the analysis in Sect. 4.2. 730 output was also sampled every half an hour for 24◦S and 70◦W near Cerro Paranal and interpolated in the height range from\n40 to 130 km with a step size of 1 km. The latter is used for the analysis in Sect. 4.2. 30 Table 2. Emission from electronically excited Fe-containing molecules Table 2. Emission from electronically excited Fe-containing molecules\nNumbera\nReaction\nRate coefficientb\nReference\n(cm3molecule−1s−1)\nR2\nFe + O3 →FeO∗+ O2\n2.9 × 10−10e−174/T\nFeng et al. (2013)\nR6\nFeOH + O3 →OFeOH∗+ O2\n7.3 × 10−10(−200/T)−1.65\nThis work\nR10\nFeO + O3 →FeO∗\n2 + O2\n3.0 × 10−10e−177/T\nRollason and Plane (2000)\nR11\nOFeOH + O →FeOH + O2\n6.0 × 10−10(−200/T)−1.68\nThis work\nR12\nOFeOH + FeOH →MSPc\n9.0 × 10−10\nThis work\nR13\nOFeOH + OFeOH →MSPc\n9.0 × 10−10\nThis work\na consistent with numbering in text\nb temperature T in Kelvin\nc meteoric smoke particles Table 3. Potential mechanisms for generating HO2 emission\nNumbera\nReaction\nRate coefficient\nReference\n(cm3molecule−1s−1)\nR8\nHO2 + O2(a1∆g) →HO∗\n2 + O2\n1.0 × 10−10\nThis work\nR9\nH + O2 + M →HO∗\n2 + M\nk0(4.4 × 10−32,n = 1.3),\nBurkholder et al. (2015)\nk∞(7.5 × 10−11,m = −0.2)b\nR14\nH + O3 →HO∗\n2 + O\n7.0 × 10−13 (upper limit)\nHoward and Finlayson-Pitts (1980)\nR15\nHO2 + O →OH + O2(a1∆g)\n0.95 × 2.7 × 10−11e222.5/T\nThis workc\nR16\nHO2 + O →OH + O2(X3Σ−\ng )\n0.05 × 2.7 × 10−11e222.5/T\nThis workc\na consistent with numbering in text\nb low- and high-pressure limits with exponents n and m for (Tref/T ) with Tref = 300 K (three-body recombination)\nc c.f. Burkholder et al. (2015) Table 3. Another source of a1∆g at even lower heights could be Reaction R9 if M is O2. However, the efficiency is quite\nuncertain. Hence, we focus on Reaction 16, which also provides a1∆g at heights relevant for HO2. We evaluate this choice in\nSect. 4.2. 770 nighttime production of a1∆g. With a branching ratio of 95%, we explore the maximum possible contribution of this pathway. 755\nFor a better understanding of the impact of this percentage, we also performed a simulation with a relative a1∆g yield of 40%. The main effect is the decrease of the nocturnal HO2 emission due to Reaction R8 around midnight and later in agreement\nwith the reduced percentage. At the beginning of the night, the impact is smaller as a1∆g mainly originates from the daytime\nO3 photolysis, which is considered in WACCM. The decay of this population shows a time constant of the order of 1 hour in nighttime production of a1∆g. With a branching ratio of 95%, we explore the maximum possible contribution of this pathway. 755\nFor a better understanding of the impact of this percentage, we also performed a simulation with a relative a1∆g yield of 40%. The main effect is the decrease of the nocturnal HO2 emission due to Reaction R8 around midnight and later in agreement\nwith the reduced percentage. At the beginning of the night, the impact is smaller as a1∆g mainly originates from the daytime\nO3 photolysis, which is considered in WACCM. The decay of this population shows a time constant of the order of 1 hour in the mesopause region (Noll et al., 2016). There are other possible mechanisms that could contribute to the nighttime a1∆g\n760\npopulation. However, there is a remarkable lack of knowledge with respect to the efficiency of these reactions. The ‘classical’\npathway via O recombination and subsequent collisions (e.g., Barth and Hildebrandt, 1961; Slanger and Copeland, 2003) that\nis important for the production of the b1Σ+\ng and higher electronic states does not appear to lead to a sufficient a1∆g population,\nincluding heights around the peak of the O2(b-X)(0-0) band at 762 nm near 94 km (e.g., Yee et al., 1997). O2(a-X)(0-0) at the mesopause region (Noll et al., 2016). There are other possible mechanisms that could contribute to the nighttime a1∆g\n760\npopulation. However, there is a remarkable lack of knowledge with respect to the efficiency of these reactions. https://doi.org/10.5194/egusphere-2023-2087\nPreprint. Discussion started: 28 September 2023\nc⃝Author(s) 2023. CC BY 4.0 License. is sufficiently exothermic by 339 kJ mol−1 if O2(X3Σ−\ng ) is produced, or 244 kJ mol−1 if O2(a1∆g) is the product (which is\nthe spin-conserving channel). OFeOH has an abundance of low-lying electronic states (eight states below 2.5 eV) which could\nbe involved in emission from the visual to the near-IR. Reaction R11 is exothermic by 60 kJ mol−1. Both reactions should\nnot have significant barriers and hence calculated capture rate coefficients (Georgievskii and Klippenstein, 2005) are assigned\nto these reactions. Reactions R12 and R13 represent polymerisation of OFeOH and FeOH to make meteoric smoke particles,\n740\nwhich are treated as a permanent sink. is sufficiently exothermic by 339 kJ mol−1 if O2(X3Σ−\ng ) is produced, or 244 kJ mol−1 if O2(a1∆g) is the product (which is\nthe spin-conserving channel). OFeOH has an abundance of low-lying electronic states (eight states below 2.5 eV) which could\nbe involved in emission from the visual to the near-IR. Reaction R11 is exothermic by 60 kJ mol−1. Both reactions should\nnot have significant barriers and hence calculated capture rate coefficients (Georgievskii and Klippenstein, 2005) are assigned\nto these reactions. Reactions R12 and R13 represent polymerisation of OFeOH and FeOH to make meteoric smoke particles,\n740\nwhich are treated as a permanent sink. Th fi t th\nti\ni T bl 3\ntit t\nt\nti l\nh\ni\nf\nth\nti\nf\nit d HO\ntt\nti\ndid t is sufficiently exothermic by 339 kJ mol−1 if O2(X3Σ−\ng ) is produced, or 244 kJ mol−1 if O2(a1∆g) is the product (which is\nthe spin-conserving channel). OFeOH has an abundance of low-lying electronic states (eight states below 2.5 eV) which could\nbe involved in emission from the visual to the near-IR. Reaction R11 is exothermic by 60 kJ mol−1. Both reactions should\nnot have significant barriers and hence calculated capture rate coefficients (Georgievskii and Klippenstein, 2005) are assigned\nto these reactions. Reactions R12 and R13 represent polymerisation of OFeOH and FeOH to make meteoric smoke particles,\n740\nwhich are treated as a permanent sink. The first three reactions in Table 3 constitute potential mechanisms for the generation of excited HO2, an attractive candidate\nfor the source of the X(NIR) component of the nightglow continuum measured by X-shooter. Potential mechanisms for generating HO2 emission g\ng\n2\nNumbera\nReaction\nRate coefficient\nReference\n(cm3molecule−1s−1)\nR8\nHO2 + O2(a1∆g) →HO∗\n2 + O2\n1.0 × 10−10\nThis work\nR9\nH + O2 + M →HO∗\n2 + M\nk0(4.4 × 10−32,n = 1.3),\nBurkholder et al. (2015)\nk∞(7.5 × 10−11,m = −0.2)b\nR14\nH + O3 →HO∗\n2 + O\n7.0 × 10−13 (upper limit)\nHoward and Finlayson-Pitts (1980)\nR15\nHO2 + O →OH + O2(a1∆g)\n0.95 × 2.7 × 10−11e222.5/T\nThis workc\nR16\nHO2 + O →OH + O2(X3Σ−\ng )\n0.05 × 2.7 × 10−11e222.5/T\nThis workc b low- and high-pressure limits with exponents n and m for (Tref/T ) with Tref = 300 K (three-body recombination)\nc c.f. Burkholder et al. (2015) b low- and high-pressure limits with exponents n and m for (Tref/T ) with Tref = 300 K (three-body recombination) b low- and high-pressure limits with exponents n and m for (Tref/T ) with Tref = 300 K (three-body recombination)\nc c f Burkholder et al (2015) Table 2 lists potential Fe-related nightglow chemistry that was explored. Reaction R2 generates FeO emission (Feng et al.,\n2013). According to Helmer and Plane (1994), it is exothermic by 301 ± 8 kJ mol−1, i.e. almost the entire wavelength range\nof the X-shooter nightglow spectrum could be covered. Reaction R10 that produces FeO2 indicates a similar exothermicity of\n311±48 kJ mol−1 (Rollason and Plane, 2000). For the other reactions in Table 2, the reaction exothermicities were calculated\nusing the high accuracy complete basis set CBS-QB3 method (Frisch et al., 2016). The production of OFeOH via Reaction R6\n735 735 29 We list the already mentioned\nReaction R8 that is most relevant for the production of chemiluminescent emission in the laboratory and Reaction R9 that 740 The first three reactions in Table 3 constitute potential mechanisms for the generation of excited HO2, an attractive candidate\nfor the source of the X(NIR) component of the nightglow continuum measured by X-shooter. We list the already mentioned\nReaction R8 that is most relevant for the production of chemiluminescent emission in the laboratory and Reaction R9 that also produces chemiluminescence and is the main production process of HO2 (Sect. 3.2). In principle, the direct radiative\n745\nrecombination of H and O2 could also contribute. However, this mechanism is very unlikely to compete with the termolecular\nReaction R9 at the relatively high pressures of the mesopause region. It would need a probability of the order of 10−8 to make\na small contribution at least. As confirmed by tests, the intensity variations from this reaction are very similar to those of the\ntermolecular case. Hence, an estimate of the relevance would be very challenging. We neglect this possible minor channel also produces chemiluminescence and is the main production process of HO2 (Sect. 3.2). In principle, the direct radiative\n745\nrecombination of H and O2 could also contribute. However, this mechanism is very unlikely to compete with the termolecular\nReaction R9 at the relatively high pressures of the mesopause region. It would need a probability of the order of 10−8 to make\na small contribution at least. As confirmed by tests, the intensity variations from this reaction are very similar to those of the\ntermolecular case. Hence, an estimate of the relevance would be very challenging. We neglect this possible minor channel in the following. Lastly, the reaction between H and O3 (Reaction R14) is sufficiently exothermic to produce excited HO2. 750\nHowever, the channel producing HO2 + O is known from experiment to be minor (3%) compared with the channel producing\nOH + O2 (Howard and Finlayson-Pitts, 1980). Reactions R15 and R16 lead to the destruction of HO2 by collisions with O. The difference between both reactions is the\nelectronic state of the resulting O2 molecule. We included this distinction as we consider Reaction R15 as the source of the in the following. Lastly, the reaction between H and O3 (Reaction R14) is sufficiently exothermic to produce excited HO2. 750\nHowever, the channel producing HO2 + O is known from experiment to be minor (3%) compared with the channel producing\nOH + O2 (Howard and Finlayson-Pitts, 1980). Reactions R15 and R16 lead to the destruction of HO2 by collisions with O. The difference between both reactions is the\nelectronic state of the resulting O2 molecule. We included this distinction as we consider Reaction R15 as the source of the Reactions R15 and R16 lead to the destruction of HO2 by collisions with O. The difference between both reactions is the\nelectronic state of the resulting O2 molecule. We included this distinction as we consider Reaction R15 as the source of the\nnighttime production of a1∆g. With a branching ratio of 95%, we explore the maximum possible contribution of this pathway. 755\nFor a better understanding of the impact of this percentage, we also performed a simulation with a relative a1∆g yield of 40%. The main effect is the decrease of the nocturnal HO2 emission due to Reaction R8 around midnight and later in agreement\nwith the reduced percentage. At the beginning of the night, the impact is smaller as a1∆g mainly originates from the daytime\nO3 photolysis, which is considered in WACCM. The decay of this population shows a time constant of the order of 1 hour in\nthe mesopause region (Noll et al., 2016). There are other possible mechanisms that could contribute to the nighttime a1∆g\n760\npopulation. However, there is a remarkable lack of knowledge with respect to the efficiency of these reactions. The ‘classical’\npathway via O recombination and subsequent collisions (e.g., Barth and Hildebrandt, 1961; Slanger and Copeland, 2003) that\nis important for the production of the b1Σ+\ng and higher electronic states does not appear to lead to a sufficient a1∆g population,\nincluding heights around the peak of the O2(b-X)(0-0) band at 762 nm near 94 km (e.g., Yee et al., 1997). O2(a-X)(0-0) at\n1,270 nm shows a mean centroid emission height of about 89 km at Cerro Paranal (Noll et al., 2016). This altitude is similar\n765\nto the centroid emission heights of OH lines, particularly those with relatively high vibrational excitation (Noll et al., 2022a). Therefore, reactions between OH and O might lead to the generation of excited O2 molecules in the altitude range of the OH\nemission. 4.2\nResults from simulations Figure 9 provides an overview of the typical nighttime emission and density profiles of the different relevant species. Only\nprofiles close to local midnight were considered for the calculation of the mean curves. The climatological variations with profiles close to local midnight were considered for the calculation of the mean curves. The climatological variations with\nrespect to local time and day of year for relative intensity of FeO and OFeOH are shown in Fig. 10. For the four HO2-\n790\nrelated emission processes listed in Table 3, the corresponding climatologies are displayed in Fig. 11. The reference intensities\n⟨I⟩for these climatologies are provided in Table 4. They are compared to the corresponding results for the X-shooter-based\nanalysis, which involves the measurement of individual continuum features and the derivation of continuum components. For\nthe intensity, the table also shows the correlation coefficients r for the correlation of the model climatologies of the different respect to local time and day of year for relative intensity of FeO and OFeOH are shown in Fig. 10. For the four HO2-\n790\nrelated emission processes listed in Table 3, the corresponding climatologies are displayed in Fig. 11. The reference intensities\n⟨I⟩for these climatologies are provided in Table 4. They are compared to the corresponding results for the X-shooter-based\nanalysis, which involves the measurement of individual continuum features and the derivation of continuum components. For\nthe intensity, the table also shows the correlation coefficients r for the correlation of the model climatologies of the different analysed emission processes with the variability patterns of the measured continuum features at 595 nm (f06a) and 1,510 nm\n795\n(f15a) that are displayed in Fig. 4. The table also lists average centroid emission heights ⟨hcen⟩from the model-based nighttime\nclimatologies, compared with the ranges indicated from the Q2DW-related analysis of the two continuum features in Sect. 3.5. Finally, the climatology-based effective solar cycle effect ⟨SCE⟩is provided for the modelled and measured intensities. Although the covered time interval from 2003 to 2014 only partly overlaps with the X-shooter sample (Oct 2009 to\nSep 2019), the mean solar radio flux of all nighttime climatological grid points was also very close to this reference value (97 to 107 sfu with a mean of 100 sfu), which caused only very small corrections. We also compared the effective solar cycle effects\n780\nfor the nighttime climatologies of the measured and modelled emissions. The shift of the time interval certainly contributes to\nthe systematic uncertainties but does not appear to significantly increase them. Based on the results for the different calculation\nmethods discussed in Sect. 3.4, we expect total uncertainties of the order of a few per cent per 100 sfu. Apart from intensity\nclimatologies, we also derived climatologies for the centroid heights of the emissions, i.e. emission-weighted heights for the whole range from 40 to 130 km. The typical nighttime emission profiles were mostly well localised in the mesopause region. 785\nFinally, we calculated climatologies for the number densities of different relevant atmospheric species at specific heights. https://doi.org/10.5194/egusphere-2023-2087\nPreprint. Discussion started: 28 September 2023\nc⃝Author(s) 2023. CC BY 4.0 License. To be consistent with the analysis of the nocturnal/seasonal variations in the X-shooter-based measurements (Sect. 3.3), we\nderived model climatologies for the vertically integrated volume emission rates between 40 and 130 km in a similar way. We\nonly considered nighttime data with solar zenith angles larger than 100◦, which reduced the sample from 210,240 to 92,064\ntime steps for 12 years. The time resolution of 30 min is consistent with the binning of the X-shooter data. As the resulting To be consistent with the analysis of the nocturnal/seasonal variations in the X-shooter-based measurements (Sect. 3.3), we\nderived model climatologies for the vertically integrated volume emission rates between 40 and 130 km in a similar way. We\nonly considered nighttime data with solar zenith angles larger than 100◦, which reduced the sample from 210,240 to 92,064\ntime steps for 12 years. The time resolution of 30 min is consistent with the binning of the X-shooter data. As the resulting\nsample is still much larger than those used for the climatologies of the binned measured data, it is was not necessary to partly\n775\ndecrease the resolution to achieve minimum subsample sizes of 200 or 400 for each relevant grid point (Sect. 3.3). Consistent\nwith the X-shooter-related results, the intensity climatologies are given for a fixed solar radio flux averaged for 27 days of\n100 sfu. Although the covered time interval from 2003 to 2014 only partly overlaps with the X-shooter sample (Oct 2009 to\nSep 2019), the mean solar radio flux of all nighttime climatological grid points was also very close to this reference value (97 to sample is still much larger than those used for the climatologies of the binned measured data, it is was not necessary to partly\n775\ndecrease the resolution to achieve minimum subsample sizes of 200 or 400 for each relevant grid point (Sect. 3.3). Consistent\nwith the X-shooter-related results, the intensity climatologies are given for a fixed solar radio flux averaged for 27 days of\n100 sfu. The ‘classical’\npathway via O recombination and subsequent collisions (e.g., Barth and Hildebrandt, 1961; Slanger and Copeland, 2003) that\nis important for the production of the b1Σ+\ng and higher electronic states does not appear to lead to a sufficient a1∆g population,\nincluding heights around the peak of the O2(b-X)(0-0) band at 762 nm near 94 km (e.g., Yee et al., 1997). O2(a-X)(0-0) at 1,270 nm shows a mean centroid emission height of about 89 km at Cerro Paranal (Noll et al., 2016). This altitude is similar\n765\nto the centroid emission heights of OH lines, particularly those with relatively high vibrational excitation (Noll et al., 2022a). Therefore, reactions between OH and O might lead to the generation of excited O2 molecules in the altitude range of the OH\nemission. Another source of a1∆g at even lower heights could be Reaction R9 if M is O2. However, the efficiency is quite\nuncertain. Hence, we focus on Reaction 16, which also provides a1∆g at heights relevant for HO2. We evaluate this choice in\nSect 4 2\n770 30 4.2.1\nFeO and OFeOH emission 8,760 profiles with local times of 23:48 and 00:18) at 24◦S and 0\n10\n20\nVolume emission rate [R km\n1]\n70\n80\n90\n100\nHeight [km]\n(a)\nFe-related emission profiles at midnight\nFeO3 (R2)\nOFeOH (R6)\nFeO2 (R10) 10\n6\n10\n4\n10\n2\n100\n102\n104\nNumber density [cm\n3]\n70\n80\n90\n100\nHeight [km]\n(b)\nFe-related density profiles at midnight\nFe\nFeO\nFeO2\nFeOH\nOFeOH Fe-related density profiles at midnight Height [km] Volume emission rate [R km\n1] Number density [cm\n3] 0\n5\n10\nVolume emission rate [kR km\n1]\n70\n80\n90\n100\nHeight [km]\n(c)\nHO2-related emission profiles at midnight\nHO2 (R8)\nHO2 (R9)\nHO2 (R14) y \n100\n102\n104\n106\n108\nNumber density [cm\n3]\n70\n80\n90\n100\nHeight [km]\n(d)\nHO2-related density profiles at midnight\nHO2\nO2(a1\ng)\nH\nO3 HO2-related emission profiles at midnight HO2-related density profiles at midnight HO2-related density profiles at midnight Height [km] Figure 9. WACCM-related mean profiles of (a) volume emission rates of excited Fe-containing molecules (see Table 2), (b) number densities\nof Fe-containing molecules, (c) volume emission rates of excited HO2 produced by different processes (see Table 3), and (d) number densities\nof species relevant for the production of excited HO2 for local midnight (i.e. 8,760 profiles with local times of 23:48 and 00:18) at 24◦S and\n70◦W. pattern with only slight shifts in the peak positions. Although the moderate nocturnal decrease between austral autumn and pattern with only slight shifts in the peak positions. Although the moderate nocturnal decrease between austral autumn and pattern with only slight shifts in the peak positions. Although the moderate nocturnal decrease between austral autumn and\nspring in the WACCM data is not present in the measured climatology, the overall agreement is nevertheless satisfactory. 805\nThe correlation coefficient r for the grid cells with significant nighttime contribution is +0.81. Table 4 also shows an average\ncentroid height for the FeO emission of Reaction R2 of 87.9 km (see also Fig. 9a), which is located between the low variability-\nbased and maximum centroid emission heights from the analysis of Q2DW-related variations of the 595 nm variations in spring in the WACCM data is not present in the measured climatology, the overall agreement is nevertheless satisfactory. 805\nThe correlation coefficient r for the grid cells with significant nighttime contribution is +0.81. 4.2.1\nFeO and OFeOH emission The best-known structure of the nightglow continuum is the peak at about 595 nm, which is identified to be caused by FeO\n800\nemission (Evans et al., 2010; Saran et al., 2011; Gattinger et al., 2011a; Unterguggenberger et al., 2017). The related WACCM\nclimatology in Fig. 10a shows a primary maximum in May and a secondary one in October, whereas the lowest nocturnal\naverages occur around the turn of the year. The climatology for the 595 nm feature in Fig. 4a shows a similar seasonal variability 31 0\n10\n20\nVolume emission rate [R km\n1]\n70\n80\n90\n100\nHeight [km]\n(a)\nFe-related emission profiles at midnight\nFeO3 (R2)\nOFeOH (R6)\nFeO2 (R10)\n10\n6\n10\n4\n10\n2\n100\n102\n104\nNumber density [cm\n3]\n70\n80\n90\n100\nHeight [km]\n(b)\nFe-related density profiles at midnight\nFe\nFeO\nFeO2\nFeOH\nOFeOH\n0\n5\n10\nVolume emission rate [kR km\n1]\n70\n80\n90\n100\nHeight [km]\n(c)\nHO2-related emission profiles at midnight\nHO2 (R8)\nHO2 (R9)\nHO2 (R14)\n100\n102\n104\n106\n108\nNumber density [cm\n3]\n70\n80\n90\n100\nHeight [km]\n(d)\nHO2-related density profiles at midnight\nHO2\nO2(a1\ng)\nH\nO3\nFigure 9. WACCM-related mean profiles of (a) volume emission rates of excited Fe-containing molecules (see Table 2), (b) number densities\nof Fe-containing molecules, (c) volume emission rates of excited HO2 produced by different processes (see Table 3), and (d) number densities\nof species relevant for the production of excited HO2 for local midnight (i.e. 3.1 and 3.2, this appears to be a\nrobust identification of FeO chemiluminescence However the 595 nm feature is only a very small part of the entire well- LT) of 86.3 and 88.9 km are inside this interval. Moreover, the moderate positive solar cycle effects from the modelled and\n810\nmeasured climatologies of about +16 and +11% per 100 sfu agree quite well within their uncertainties (Sects. 4.1 and 3.4,\nrespectively). Together with the spectral structure of the continuum in the VIS arm discussed in Sects. 3.1 and 3.2, this appears to be a\nrobust identification of FeO chemiluminescence. However, the 595 nm feature is only a very small part of the entire well- robust identification of FeO chemiluminescence. However, the 595 nm feature is only a very small part of the entire well-\ncorrelated FeO(VIS) component plotted in Fig. 3. Table 4 lists a mean intensity of the measured feature of about 27 R, whereas\n815\nthe FeO(VIS) component could emit about 2.9 kR. In contrast, the simulated mean intensity is only 170 R assuming a quantum\nyield (QY) of unity. This value is sufficient for the main peak of the orange bands, which would imply a QY of about 16%. This percentage is consistent with the result of Unterguggenberger et al. (2017) of 13 ± 3 %, which is also based on X-shooter\nmeasurements and WACCM simulations, although the samples and analysis approaches differ. If other features and more correlated FeO(VIS) component plotted in Fig. 3. Table 4 lists a mean intensity of the measured feature of about 27 R, whereas\n815\nthe FeO(VIS) component could emit about 2.9 kR. In contrast, the simulated mean intensity is only 170 R assuming a quantum\nyield (QY) of unity. This value is sufficient for the main peak of the orange bands, which would imply a QY of about 16%. This percentage is consistent with the result of Unterguggenberger et al. (2017) of 13 ± 3 %, which is also based on X-shooter\nmeasurements and WACCM simulations, although the samples and analysis approaches differ. If other features and more correlated FeO(VIS) component plotted in Fig. 3. Table 4 lists a mean intensity of the measured feature of about 27 R, whereas\n815\nthe FeO(VIS) component could emit about 2.9 kR. In contrast, the simulated mean intensity is only 170 R assuming a quantum\nyield (QY) of unity. 4.2.1\nFeO and OFeOH emission Table 4 also shows an average\ncentroid height for the FeO emission of Reaction R2 of 87.9 km (see also Fig. 9a), which is located between the low variability-\nbased and maximum centroid emission heights from the analysis of Q2DW-related variations of the 595 nm variations in 32 https://doi.org/10.5194/egusphere-2023-2087\nPreprint. Discussion started: 28 September 2023\nc⃝Author(s) 2023. CC BY 4.0 License. https://doi.org/10.5194/egusphere-2023-2087\nPreprint. Discussion started: 28 September 2023\nc⃝Author(s) 2023. CC BY 4.0 License. 0\n100\n200\n300\nDay of year\n4\n2\n0\n2\n4\nLocal time [h]\n(a)\nFeO emission from Fe + O3 (R2)\n0\n100\n200\n300\nDay of year\n4\n2\n0\n2\n4\nLocal time [h]\n(b)\nOFeOH emission from FeOH + O3 (R6)\n0.8\n0.9\n1.0\n1.1\n1.2\n1.3\n1.4\nRelative intensity\n0.5\n0.6\n0.7\n0.8\n0.9\n1.0\n1.1\n1.2\n1.3\n1.4\n1.5\nRelative intensity\nFigure 10. Climatologies of intensity relative to the mean for the vertically-integrated WACCM-simulated emission of (a) FeO and (b)\nOFeOH (see Table 2) at 24◦S and 70◦W. The climatologies were derived in a similar way as those in Fig. 4. With 92,064 selected nighttime\ndata points, the subsample size for the relevant grid points was well above the limit of 200 (and even 400) used for the X-shooter data. 0\n100\n200\n300\nDay of year\n4\n2\n0\n2\n4\nLocal time [h]\n(a)\nFeO emission from Fe + O3 (R2)\n0.8\n0.9\n1.0\n1.1\n1.2\n1.3\n1.4\nRelative intensity 0\n100\n200\n300\nDay of year\n4\n2\n0\n2\n4\nLocal time [h]\n(b)\nOFeOH emission from FeOH + O3 (R6)\n0.5\n0.6\n0.7\n0.8\n0.9\n1.0\n1.1\n1.2\n1.3\n1.4\n1.5\nRelative intensity Figure 10. Climatologies of intensity relative to the mean for the vertically-integrated WACCM-simulated emission of (a) FeO and (b)\nOFeOH (see Table 2) at 24◦S and 70◦W. The climatologies were derived in a similar way as those in Fig. 4. With 92,064 selected nighttime\ndata points, the subsample size for the relevant grid points was well above the limit of 200 (and even 400) used for the X-shooter data. ect. 3.5. Even the minimum and maximum values of the simulated climatology (which shows an Sect. 3.5. Even the minimum and maximum values of the simulated climatology (which shows an increase with increasing\nLT) of 86.3 and 88.9 km are inside this interval. Moreover, the moderate positive solar cycle effects from the modelled and\n810\nmeasured climatologies of about +16 and +11% per 100 sfu agree quite well within their uncertainties (Sects. 4.1 and 3.4,\nrespectively). Together with the spectral structure of the continuum in the VIS arm discussed in Sects. https://doi.org/10.5194/egusphere-2023-2087\nPreprint. Discussion started: 28 September 2023\nc⃝Author(s) 2023. CC BY 4.0 License. 0\n100\n200\n300\nDay of year\n4\n2\n0\n2\n4\nLocal time [h]\n(a)\nHO2 emission from HO2 + O2(a1\ng) (R8)\n0\n100\n200\n300\nDay of year\n4\n2\n0\n2\n4\nLocal time [h]\n(b)\nHO2 emission from H + O2 + M (R9)\n0\n100\n200\n300\nDay of year\n4\n2\n0\n2\n4\nLocal time [h]\n(c)\nHO2 emission from H + O3 (R14)\n0\n100\n200\n300\nDay of year\n4\n2\n0\n2\n4\nLocal time [h]\n(d)\nHO2 emission from R8 + R9 + R14\n0.3\n0.6\n0.9\n1.2\n1.5\n1.8\n2.1\n2.4\n2.7\n3.0\n3.3\n3.6\n3.9\nRelative intensity\n0.6\n0.8\n1.0\n1.2\n1.4\n1.6\n1.8\n2.0\nRelative intensity\n0.7\n0.8\n0.9\n1.0\n1.1\n1.2\n1.3\n1.4\nRelative intensity\n0.6\n0.8\n1.0\n1.2\n1.4\n1.6\n1.8\n2.0\n2.2\n2.4\n2.6\n2.8\nRelative intensity\nFigure 11. Climatologies of intensity relative to the mean for the vertically-integrated WACCM-simulated emission of excited HO2 produced\nby three different processes (see Table 3) and the sum of them at 24◦S and 70◦W. Sample and calculation of the climatologies were the\nsame as for Fig. 10. This value is sufficient for the main peak of the orange bands, which would imply a QY of about 16%. This percentage is consistent with the result of Unterguggenberger et al. (2017) of 13 ± 3 %, which is also based on X-shooter\nmeasurements and WACCM simulations, although the samples and analysis approaches differ. If other features and more underlying continuum is added to the calculation of the intensity, the simulated FeO emission budget is consumed quite fast. 820\nAdding just the continuum below the integration range of the 595 nm feature between 584 and 607 nm leads to 148 R for the\nmean continuum and 123 R if only the FeO(VIS) component is considered. Integration of the nightglow spectrum between 560\nand 620 nm and subtraction of a constant flux that was measured at 500 nm returned 221 R. This kind of measurement was\nalready performed by Saran et al. (2011) for ESI spectra taken at Mauna Kea (see Sect. 1). They found intensities up to 157 R underlying continuum is added to the calculation of the intensity, the simulated FeO emission budget is consumed quite fast. 820\nAdding just the continuum below the integration range of the 595 nm feature between 584 and 607 nm leads to 148 R for the\nmean continuum and 123 R if only the FeO(VIS) component is considered. Integration of the nightglow spectrum between 560\nand 620 nm and subtraction of a constant flux that was measured at 500 nm returned 221 R. This kind of measurement was\nalready performed by Saran et al. (2011) for ESI spectra taken at Mauna Kea (see Sect. 1). They found intensities up to 157 R in two nights. A simulation based on FeMOD (Gardner et al., 2005) returned 61 R, which was then compared to a measured\n825\nintensity of about 80 R. Interestingly, their ratio of 1.3 for measurement vs. model is the same that we obtain for our X-shooter in two nights. A simulation based on FeMOD (Gardner et al., 2005) returned 61 R, which was then compared to a measured\n825\nintensity of about 80 R. Interestingly, their ratio of 1.3 for measurement vs. model is the same that we obtain for our X-shooter 33 https://doi.org/10.5194/egusphere-2023-2087\nPreprint. Discussion started: 28 September 2023\nc⃝Author(s) 2023. CC BY 4.0 License. As the climatology in (a) shows a very large dynamical range, the colour scale was cut at a relative intensity of 4, which\nd\nd th\ni\nli\nd\nb\nth\nf\nt\nf 2 0\n100\n200\n300\nDay of year\n4\n2\n0\n2\n4\nLocal time [h]\n(a)\nHO2 emission from HO2 + O2(a1\ng) (R8)\n0.3\n0.6\n0.9\n1.2\n1.5\n1.8\n2.1\n2.4\n2.7\n3.0\n3.3\n3.6\n3.9\nRelative intensity 0\n100\n200\n300\nDay of year\n4\n2\n0\n2\n4\nLocal time [h]\n(b)\nHO2 emission from H + O2 + M (R9)\n0.6\n0.8\n1.0\n1.2\n1.4\n1.6\n1.8\n2.0\nRelative intensity HO2 emission from H + O2 + M (R9) Local time [h] Local time [h] Day of year 0\n100\n200\n300\nDay of year\n4\n2\n0\n2\n4\nLocal time [h]\n(c)\nHO2 emission from H + O3 (R14)\n0.7\n0.8\n0.9\n1.0\n1.1\n1.2\n1.3\n1.4\nRelative intensity 0\n100\n200\n300\nDay of year\n4\n2\n0\n2\n4\nLocal time [h]\n(d)\nHO2 emission from R8 + R9 + R14\n0.6\n0.8\n1.0\n1.2\n1.4\n1.6\n1.8\n2.0\n2.2\n2.4\n2.6\n2.8\nRelative intensity HO2 emission from R8 + R9 + R14 HO2 emission from H + O3 (R14) Local time [h] Local time [h] Figure 11. Climatologies of intensity relative to the mean for the vertically-integrated WACCM-simulated emission of excited HO2 produced\nby three different processes (see Table 3) and the sum of them at 24◦S and 70◦W. Sample and calculation of the climatologies were the\nsame as for Fig. 10. As the climatology in (a) shows a very large dynamical range, the colour scale was cut at a relative intensity of 4, which\ndecreased the visualised range by more than a factor of 2. and WACCM data. Moreover, Unterguggenberger et al. (2017) stated that the FeO main peak only contributes about 3.9% to\nthe entire spectrum of the orange bands calculated by Gattinger et al. (2011a). For our case, this would be a total emission of\n692 R. Unterguggenberger et al. (2017) also measured a fraction of 3.3 ± 0.8% of the main peak contribution to the emission\nbetween 500 and 720 nm. This is consistent with our results. We obtain 2.8% for the full nightglow continuum and 3.1% for\n830\nthe FeO(VIS) component. and WACCM data. Moreover, Unterguggenberger et al. (2017) stated that the FeO main peak only contributes about 3.9% to\nthe entire spectrum of the orange bands calculated by Gattinger et al. (2011a). For our case, this would be a total emission of\n692 R. Unterguggenberger et al. (2017) also measured a fraction of 3.3 ± 0.8% of the main peak contribution to the emission\nbetween 500 and 720 nm. This is consistent with our results. We obtain 2.8% for the full nightglow continuum and 3.1% for\n830\nthe FeO(VIS) component. the entire spectrum of the orange bands calculated by Gattinger et al. (2011a). For our case, this would be a total emission of\n692 R. Unterguggenberger et al. (2017) also measured a fraction of 3.3 ± 0.8% of the main peak contribution to the emission\nbetween 500 and 720 nm. This is consistent with our results. We obtain 2.8% for the full nightglow continuum and 3.1% for\n830\nthe FeO(VIS) component. between 500 and 720 nm. This is consistent with our results. We obtain 2.8% for the full nightglow continuum and 3.1% for\n830\nthe FeO(VIS) component. 830 34 6 for the\nX-shooter-related features) Comparison of nightglow continuum emissions from X-shooter spectra and WACCM simulations of po\nEmissiona\n⟨I⟩b\nrf06a\nc\nrf15a\nd\n⟨hcen⟩e\n⟨SCE⟩f\n(kR)\n(km)\n(10−2 sfu−1)\n595 nm (f06a)\n0.027\n+1.000\n−0.305\n85.2–89.2\n+0.107\nFeO(VIS)\n2.90\n+0.926\n−0.600\nFeO (R2)\n0.170\n+0.807\n+0.116\n87.9\n+0.158\nOFeOH (R6)\n0.220\n+0.867\n−0.190\n82.3\n+0.053\nFeO2 (R10)\n0.0002\n+0.744\n+0.262\n85.8\n+0.102\n1,510 nm (f15a)\n1.37\n−0.305\n+1.000\n80.0–84.1\n+0.042\nX(NIR)\n11.81\n−0.320\n+1.000\nHO2 (R8)\n12.74\n+0.118\n+0.644\n78.0\n+0.083\nHO2 (R9)\n81.52\n+0.008\n+0.852\n80.8\n+0.084\nHO2 (R14)\n7.27\n+0.371\n+0.635\n86.0\n+0.115\nHO2 (sum)\n101.53\n+0.062\n+0.805\n80.8\n+0.087 a continuum feature or component (X-shooter) or emission of given molecule and reaction in\nTables 2 and 3 (WACCM) b mean intensity from nighttime climatologies in Figs. 4, 10, and 11, or continuum component in\nFig. 3 c correlation coefficient for correlation with climatology of 595 nm feature in Fig. 4a d correlation coefficient for correlation with climatology of 1,510 nm feature in Fig. 4b e range of possible centroid emission heights from Q2DW-related analysis in Sect. 3.5 (X-shooter)\nand mean centroid emission heights from nighttime climatologies (WACCM) f\nmean relative solar cycle effect for the intensity for a change of the solar radio flux averaged for\n27 days by 100 sfu from the corresponding nighttime climatologies (plotted in Fig. 6 for the\nX-shooter-related features) Hence, the emissions of the apparent structures of the FeO orange bands in the nightglow continuum are already an issue for\nthe model. Furthermore, the simulated intensity is more than an order of magnitude too low if the entire FeO(VIS) component\nspectrum is compared. This result is difficult to explain as WACCM agrees well with Fe concentrations measured by lidars (Feng et al., 2013). Moreover, the rate coefficient for Reaction R2 has been measured in the laboratory (Helmer and Plane,\n835\n1994) and is close to the capture rate, i.e. the physical upper limit. A possible alternative production pathway of FeO would\nbe the reaction of relatively abundant FeOH (see Fig. 9b) and H. However, this reaction is exothermic by only 61 kJ mol−1,\nwhich is not sufficient to produce the observed spectrum. In principle, the latter would be possible by the sufficiently exothermic\nReaction R10 in Table 2 that produces excited FeO2. However, our simulation indicates that this emission is very faint (Fig. 9a). (Feng et al., 2013). https://doi.org/10.5194/egusphere-2023-2087\nPreprint. Discussion started: 28 September 2023\nc⃝Author(s) 2023. CC BY 4.0 License. Table 4. Comparison of nightglow continuum emissions from X-shooter spectra and WACCM simulations of potential emission processes\nEmissiona\n⟨I⟩b\nrf06a\nc\nrf15a\nd\n⟨hcen⟩e\n⟨SCE⟩f\n(kR)\n(km)\n(10−2 sfu−1)\n595 nm (f06a)\n0.027\n+1.000\n−0.305\n85.2–89.2\n+0.107\nFeO(VIS)\n2.90\n+0.926\n−0.600\nFeO (R2)\n0.170\n+0.807\n+0.116\n87.9\n+0.158\nOFeOH (R6)\n0.220\n+0.867\n−0.190\n82.3\n+0.053\nFeO2 (R10)\n0.0002\n+0.744\n+0.262\n85.8\n+0.102\n1,510 nm (f15a)\n1.37\n−0.305\n+1.000\n80.0–84.1\n+0.042\nX(NIR)\n11.81\n−0.320\n+1.000\nHO2 (R8)\n12.74\n+0.118\n+0.644\n78.0\n+0.083\nHO2 (R9)\n81.52\n+0.008\n+0.852\n80.8\n+0.084\nHO2 (R14)\n7.27\n+0.371\n+0.635\n86.0\n+0.115\nHO2 (sum)\n101.53\n+0.062\n+0.805\n80.8\n+0.087 Table 4. Comparison of nightglow continuum emissions from X-shooter spectra and WACCM simulations of potential emission processes Table 4. Comparison of nightglow continuum emissions from X-shooter spectra and WACCM simulations o htglow continuum emissions from X-shooter spectra and WACCM simulations of potential emission processes Table 4. Comparison of nightglow continuum emissions from X-shooter spectra and WACCM simulations of potential emission processes\nEmissiona\n⟨I⟩b\nrf06a\nc\nrf15a\nd\n⟨hcen⟩e\n⟨SCE⟩f\n(kR)\n(km)\n(10−2 sfu−1)\n595 nm (f06a)\n0.027\n+1.000\n−0.305\n85.2–89.2\n+0.107\nFeO(VIS)\n2.90\n+0.926\n−0.600\nFeO (R2)\n0.170\n+0.807\n+0.116\n87.9\n+0.158\nOFeOH (R6)\n0.220\n+0.867\n−0.190\n82.3\n+0.053\nFeO2 (R10)\n0.0002\n+0.744\n+0.262\n85.8\n+0.102\n1,510 nm (f15a)\n1.37\n−0.305\n+1.000\n80.0–84.1\n+0.042\nX(NIR)\n11.81\n−0.320\n+1.000\nHO2 (R8)\n12.74\n+0.118\n+0.644\n78.0\n+0.083\nHO2 (R9)\n81.52\n+0.008\n+0.852\n80.8\n+0.084\nHO2 (R14)\n7.27\n+0.371\n+0.635\n86.0\n+0.115\nHO2 (sum)\n101.53\n+0.062\n+0.805\n80.8\n+0.087\na continuum feature or component (X-shooter) or emission of given molecule and reaction in\nTables 2 and 3 (WACCM)\nb mean intensity from nighttime climatologies in Figs. 4, 10, and 11, or continuum component in\nFig. 3\nc correlation coefficient for correlation with climatology of 595 nm feature in Fig. 4a\nd correlation coefficient for correlation with climatology of 1,510 nm feature in Fig. 4b\ne range of possible centroid emission heights from Q2DW-related analysis in Sect. 3.5 (X-shooter)\nand mean centroid emission heights from nighttime climatologies (WACCM)\nf\nmean relative solar cycle effect for the intensity for a change of the solar radio flux averaged for\n27 days by 100 sfu from the corresponding nighttime climatologies (plotted in Fig. Moreover, the rate coefficient for Reaction R2 has been measured in the laboratory (Helmer and Plane,\n835\n1994) and is close to the capture rate, i.e. the physical upper limit. A possible alternative production pathway of FeO would\nbe the reaction of relatively abundant FeOH (see Fig. 9b) and H. However, this reaction is exothermic by only 61 kJ mol−1,\nwhich is not sufficient to produce the observed spectrum. In principle, the latter would be possible by the sufficiently exothermic\nReaction R10 in Table 2 that produces excited FeO2. However, our simulation indicates that this emission is very faint (Fig. 9a). The mean intensity in Table 4 is only 0.2 R. 840 35 https://doi.org/10.5194/egusphere-2023-2087\nPreprint. Discussion started: 28 September 2023\nc⃝Author(s) 2023. CC BY 4.0 License. 0\n100\n200\n300\nDay of year\n4\n2\n0\n2\n4\nLocal time [h]\n(a)\nO3 at 80 km\n0\n100\n200\n300\nDay of year\n4\n2\n0\n2\n4\nLocal time [h]\n(b)\nO3 at 85 km\n0\n100\n200\n300\nDay of year\n4\n2\n0\n2\n4\nLocal time [h]\n(c)\nH at 80 km\n0\n100\n200\n300\nDay of year\n4\n2\n0\n2\n4\nLocal time [h]\n(d)\nH at 85 km\n0.8\n1.2\n1.6\n2.0\n2.4\n2.8\n3.2\nRelative number density\n0.5\n0.6\n0.7\n0.8\n0.9\n1.0\n1.1\n1.2\n1.3\n1.4\n1.5\nRelative number density\n0.4\n0.6\n0.8\n1.0\n1.2\n1.4\n1.6\n1.8\nRelative number density\n0.8\n0.9\n1.0\n1.1\n1.2\n1.3\n1.4\nRelative number density\nFigure 12. Climatologies of WACCM-simulated relative number density at 80 km (left) and 85 km (right) for the chemically important,\nstrongly variable species O3 (top) and H (bottom) at 24◦S and 70◦W. Sample and calculation of the climatologies were the same as for\nFig. 10. So far, we have not the contribution of both emission processes cannot be distinguished as in the case of the centroid heights. 855\nThese results suggests that OFeOH emission could significantly contribute to the FeO(VIS) component, although the emis-\nsion spectrum (if any) is unknown, and the rate coefficient has not been measured. Here, it is set to the collision frequency, and\na QY of unity is assumed to provide an upper limit to the contribution of this reaction. Despite this, the summed emission of\nReactions R2 and R6 is still too low to explain the full nightglow continuum in the X-shooter VIS arm. So far, we have not succeeded to identify another metal-related or any reaction that could explain the missing emission. In any case, it would be\n860\nessential that the climatological variability pattern is mainly determined by the variations of O3, which is a reactant in both\nFe-related reactions. As shown by Fig. 12b for an altitude of 85 km, the semiannual pattern with maxima near the equinoxes\nand the main minimum in austral summer is a clear indicator of O3 density changes in the mesopause region above Cerro\nParanal. succeeded to identify another metal-related or any reaction that could explain the missing emission. In any case, it would be\n860\nessential that the climatological variability pattern is mainly determined by the variations of O3, which is a reactant in both\nFe-related reactions. As shown by Fig. 12b for an altitude of 85 km, the semiannual pattern with maxima near the equinoxes\nand the main minimum in austral summer is a clear indicator of O3 density changes in the mesopause region above Cerro\nParanal. succeeded to identify another metal-related or any reaction that could explain the missing emission. In any case, it would be\n860\nessential that the climatological variability pattern is mainly determined by the variations of O3, which is a reactant in both\nFe-related reactions. As shown by Fig. 12b for an altitude of 85 km, the semiannual pattern with maxima near the equinoxes\nand the main minimum in austral summer is a clear indicator of O3 density changes in the mesopause region above Cerro\nParanal. 0\n100\n200\n300\nDay of year\n4\n2\n0\n2\n4\nLocal time [h]\n(a)\nO3 at 80 km\n0.8\n1.2\n1.6\n2.0\n2.4\n2.8\n3.2\nRelative number density 0\n100\n200\n300\nDay of year\n4\n2\n0\n2\n4\nLocal time [h]\n(b)\nO3 at 85 km\n0.5\n0.6\n0.7\n0.8\n0.9\n1.0\n1.1\n1.2\n1.3\n1.4\n1.5\nRelative number density Relative number density Local time [h] 0\n100\n200\n300\nDay of year\n4\n2\n0\n2\n4\nLocal time [h]\n(d)\nH at 85 km\n0.8\n0.9\n1.0\n1.1\n1.2\n1.3\n1.4\nRelative number density 0\n100\n200\n300\nDay of year\n4\n2\n0\n2\n4\nLocal time [h]\n(c)\nH at 80 km\n0.4\n0.6\n0.8\n1.0\n1.2\n1.4\n1.6\n1.8\nRelative number density Local time [h] Figure 12. Climatologies of WACCM-simulated relative number density at 80 km (left) and 85 km (right) for the chemically important,\nstrongly variable species O3 (top) and H (bottom) at 24◦S and 70◦W. Sample and calculation of the climatologies were the same as for\nFig. 10. The last imaginable Fe-related emission process would be related to Reaction R6 of FeOH and O3. The resulting OFeOH\nradiation could cover the entire wavelength regime of the FeO(VIS) component, although wavelengths above 500 nm would\nbe more likely (Sect. 4.1). As listed by Table 4, this nightglow process could produce up to 220 R, which is more than in the\ncase of FeO. In order to be relevant for the FeO(VIS) component, the variability needs to be similar to the climatology of\nthe 595 nm feature in Fig. 4a. Indeed, the pattern in Fig. 10b is very similar. The correlation coefficient is +0.87, which is\n845\neven higher that in the case of the simulated FeO emission. Compared to the latter, the OFeOH climatology shows a more 845 36 4.2.2\nHO2 emission\n865 The climatologies of the Fe-related emissions in Fig. 10 are very different from the variations of the 1,510 nm feature in Fig. 4b. The correlation coefficients are close to 0 (Table 4). Hence, we can focus our discussion of the possible emitter of the peak\nat 1,510 nm and the other structures of the X(NIR) continuum on HO2, which appears to be the primary candidate for these\nemission features according to the discussion in Sect. 3.2. The climatologies of the Fe-related emissions in Fig. 10 are very different from the variations of the 1,510 nm feature in Fig. 4b. The correlation coefficients are close to 0 (Table 4). Hence, we can focus our discussion of the possible emitter of the peak\nat 1,510 nm and the other structures of the X(NIR) continuum on HO2, which appears to be the primary candidate for these\nemission features according to the discussion in Sect. 3.2. The mean intensities in Table 4 show that there should be sufficient emission to produce the entire X(NIR) continuum. For\n870\nthe sum of the three reactions of about 102 kR, an effective QY of only about 12% would be necessary if we neglect possible\nemission beyond 1,800 nm (Sect. 3.3). If we only consider Reaction R9, it would be 14%. Although the individual QYs could\nbe quite different, the reaction involving H and O2 appears to be the dominating pathway. The intensity discrepancy is fairly\nlarge (see also Fig. 9c). The mean intensities in Table 4 show that there should be sufficient emission to produce the entire X(NIR) continuum. For\n870\nthe sum of the three reactions of about 102 kR, an effective QY of only about 12% would be necessary if we neglect possible\nemission beyond 1,800 nm (Sect. 3.3). If we only consider Reaction R9, it would be 14%. Although the individual QYs could\nbe quite different, the reaction involving H and O2 appears to be the dominating pathway. The intensity discrepancy is fairly\nlarge (see also Fig. 9c). The mean intensities in Table 4 show that there should be sufficient emission to produce the entire X(NIR) continuum. For\n870\nthe sum of the three reactions of about 102 kR, an effective QY of only about 12% would be necessary if we neglect possible\nemission beyond 1,800 nm (Sect. 3.3). If we only consider Reaction R9, it would be 14%. https://doi.org/10.5194/egusphere-2023-2087\nPreprint. Discussion started: 28 September 2023\nc⃝Author(s) 2023. CC BY 4.0 License. prominent secondary peak in austral spring and a later nocturnal maximum. However, the discrepancies appear to be small\nenough that both emissions could contribute to the same NMF component. A clear difference are the emission profiles as\nshown in Fig. 9a. The mean nighttime centroid emission height for OFeOH is 82.3 km, which is 5.6 km lower than in the\ncase of FeO. It is also clearly lower than the derived range for the 595 nm feature. This is not an issue if this feature is mostly\n850\nproduced by the FeO-related Reaction R2 and the contribution of Reaction R6 between 564 and 680 nm is rather small in\ngeneral. The latter constraint results from the OSIRIS-based emission profile with a peak at about 87 km (Sect. 3.5) that was\nderived for this wavelength range by Evans et al. (2010). The effective solar cycle effect as shown in Table 4 should also mainly\nbe determined by Reaction R2. As the value for Reaction R6 is also not far away from the measurement for the 595 nm feature, 850 the contribution of both emission processes cannot be distinguished as in the case of the centroid heights. 855\nThese results suggests that OFeOH emission could significantly contribute to the FeO(VIS) component, although the emis-\nsion spectrum (if any) is unknown, and the rate coefficient has not been measured. Here, it is set to the collision frequency, and\na QY of unity is assumed to provide an upper limit to the contribution of this reaction. Despite this, the summed emission of\nReactions R2 and R6 is still too low to explain the full nightglow continuum in the X-shooter VIS arm. So far, we have not the contribution of both emission processes cannot be distinguished as in the case of the centroid heights. 855\nThese results suggests that OFeOH emission could significantly contribute to the FeO(VIS) component, although the emis-\nsion spectrum (if any) is unknown, and the rate coefficient has not been measured. Here, it is set to the collision frequency, and\na QY of unity is assumed to provide an upper limit to the contribution of this reaction. Despite this, the summed emission of\nReactions R2 and R6 is still too low to explain the full nightglow continuum in the X-shooter VIS arm. 4.2.2\nHO2 emission\n865 Although the individual QYs could\nbe quite different, the reaction involving H and O2 appears to be the dominating pathway. The intensity discrepancy is fairly\nlarge (see also Fig. 9c). The climatology of Reaction R9 also indicates the best correlation with the climatology of the 1,510 nm feature in Fig. 4b. 875\nThe corresponding r value is about +0.85, whereas these coefficients are close to +0.64 for the two other reactions. The\nreasons for these differences are illustrated in Fig. 11. All reactions show a decrease of the intensity in the course of the night. However, the relatively constant rate of this decrease for (b) and (c) provides a much better agreement with the climatology of\nthe 1,510 nm feature than the steep exponential drop of the intensity from Reaction R8 at the beginning of the night in (a). The The climatology of Reaction R9 also indicates the best correlation with the climatology of the 1,510 nm feature in Fig. 4b. 875\nThe corresponding r value is about +0.85, whereas these coefficients are close to +0.64 for the two other reactions. The\nreasons for these differences are illustrated in Fig. 11. All reactions show a decrease of the intensity in the course of the night. However, the relatively constant rate of this decrease for (b) and (c) provides a much better agreement with the climatology of\nthe 1,510 nm feature than the steep exponential drop of the intensity from Reaction R8 at the beginning of the night in (a). The 37 4\n2\n0\n2\n4\nLocal time [h]\n0.5\n1.0\n1.5\n2.0\n2.5\n3.0\nRelative to midnight\nHO2 (R8)\nHO2 (R9)\nHO2 (R14)\nHO2 (sum)\n1,510 nm\nFigure 13. Climatology-based mean nighttime trend of WACCM HO2 intensities for the individual reactions in Table 3 and the sum of them\nin comparison to the result for the climatology of the 1,510 nm emission plotted in Fig. 4b. All curves are provided relative to the mean\nintensity of the two data points close to midnight. The highest value for the curve for Reaction R8 (see legend), which is partly outside the\nplotted range, is 10.0. The given local times are the averages of the data sets that were used to calculate the climatological grid. The shorter\ntime coverage of the curve for the 1,510 nm feature reflects the lack of observations with central LTs close to twilight. https://doi.org/10.5194/egusphere-2023-2087\nPreprint. 4.2.2\nHO2 emission\n865 At later LTs, O2(a1∆g) is then\n880\nmainly produced by Reaction R15 in our model. For an easier comparison, Fig. 13 shows the mean nocturnal trends from the different climatologies scaled to midnight. Reaction R8 is a clear outlier. Moreover, the intensity from Reaction R14 appears to decrease too slowly compared to the also be coincidence to some extent. A check of the monthly nocturnal trends also indicates clear deviations. The trend for\n885\nthe simulated emission tends to be steeper from November to March and flatter from April to October. Although possible\nsystematic deviations of the model are difficult to estimate, this result favours Reaction R9. The large contribution of the latter\nto the summed intensity means that the nocturnal trends of the summed intensity and due just to Reaction R9 look very similar\nin Fig. 13. The only noteworthy discrepancy occurs at the beginning of the night due to the high intensity related to Reaction R8 also be coincidence to some extent. A check of the monthly nocturnal trends also indicates clear deviations. The trend for\n885\nthe simulated emission tends to be steeper from November to March and flatter from April to October. Although possible\nsystematic deviations of the model are difficult to estimate, this result favours Reaction R9. The large contribution of the latter\nto the summed intensity means that the nocturnal trends of the summed intensity and due just to Reaction R9 look very similar\nin Fig. 13. The only noteworthy discrepancy occurs at the beginning of the night due to the high intensity related to Reaction R8 (see also Fig. 11d). However, the difference is still relatively small at the earliest data point for the 1,510 nm emission. Hence,\n890\nsome contribution of this reaction to the total emission cannot be excluded, but it should not be significantly higher than\nmodelled for equal QYs. This statement refers to the branch of the HO2 production by Reaction R8 related to daytime O3\nphotolysis. The mean intensity after midnight is only 5.0 kR, i.e. 39% of the mean of the full nighttime climatology. However,\nthis value is quite uncertain as our discussion of the nocturnal O2(a1∆g) generation in Sect. 4.1 illustrates. (see also Fig. 11d). However, the difference is still relatively small at the earliest data point for the 1,510 nm emission. 4.2.2\nHO2 emission\n865 Discussion started: 28 September 2023\nc⃝Author(s) 2023. CC BY 4.0 License. https://doi.org/10.5194/egusphere-2023-2087\nPreprint. Discussion started: 28 September 2023\nc⃝Author(s) 2023. CC BY 4.0 License. 4\n2\n0\n2\n4\nLocal time [h]\n0.5\n1.0\n1.5\n2.0\n2.5\n3.0\nRelative to midnight\nHO2 (R8)\nHO2 (R9)\nHO2 (R14)\nHO2 (sum)\n1,510 nm Figure 13. Climatology-based mean nighttime trend of WACCM HO2 intensities for the individual reactions in Table 3 and the sum of them\nin comparison to the result for the climatology of the 1,510 nm emission plotted in Fig. 4b. All curves are provided relative to the mean\nintensity of the two data points close to midnight. The highest value for the curve for Reaction R8 (see legend), which is partly outside the\nplotted range, is 10.0. The given local times are the averages of the data sets that were used to calculate the climatological grid. The shorter\ntime coverage of the curve for the 1,510 nm feature reflects the lack of observations with central LTs close to twilight. latter is related to the decay of the O2(a1∆g) population produced by O3 photolysis at daytime. At later LTs, O2(a1∆g) is then\n880\nmainly produced by Reaction R15 in our model. For an easier comparison, Fig. 13 shows the mean nocturnal trends from the different climatologies scaled to midnight. Reaction R8 is a clear outlier. Moreover, the intensity from Reaction R14 appears to decrease too slowly compared to the\ncurve for the 1,510 nm emission. On the other hand, Reaction R9 seems to match almost perfectly. Of course, this could latter is related to the decay of the O2(a1∆g) population produced by O3 photolysis at daytime. At later LTs, O2(a1∆g) is then\n880\nmainly produced by Reaction R15 in our model. latter is related to the decay of the O2(a1∆g) population produced by O3 photolysis at daytime. At later LTs, O2(a1∆g) is then\n880\nmainly produced by Reaction R15 in our model. For an easier comparison, Fig. 13 shows the mean nocturnal trends from the different climatologies scaled to midnight. Reaction R8 is a clear outlier. Moreover, the intensity from Reaction R14 appears to decrease too slowly compared to the\ncurve for the 1,510 nm emission. On the other hand, Reaction R9 seems to match almost perfectly. Of course, this could latter is related to the decay of the O2(a1∆g) population produced by O3 photolysis at daytime. On the other hand, the corresponding intensity for In any case, the good agreement of the WACCM and SABER time constants indicate that the related temporal variations are\n910\nwell simulated by WACCM. For the integration from 80 to 85 km, the intensities of the exponential component are 71.8 kR\nfor WACCM and 169.9 kR for SABER 60 min after sunset. As these values are 21 to 22% of the corresponding intensities\nfor the whole column, WACCM also performs quite well with respect to the vertical distribution of O2(a-X)(0-0) produced\nby O3 photolysis. However, the WACCM-related intensity is clearly lower. On the other hand, the corresponding intensity for the nighttime production is somewhat higher than the value from SABER. If we assume a constant ratio of the WACCM and\n915\nSABER intensities for the entire night, then the branching ratio in Reaction R15 needs to be lowered to about 33%. Of course,\nthe uncertainties of this comparison are quite high. For example, the height-dependent impact of collisions can play a role. However, the results appear to show that a distinctly higher contribution of Reaction R8 to the generation of excited HO2 in\nthe night than simulated is unlikely, which strengthens the importance of Reaction R9. the nighttime production is somewhat higher than the value from SABER. If we assume a constant ratio of the WACCM and\n915\nSABER intensities for the entire night, then the branching ratio in Reaction R15 needs to be lowered to about 33%. Of course,\nthe uncertainties of this comparison are quite high. For example, the height-dependent impact of collisions can play a role. However, the results appear to show that a distinctly higher contribution of Reaction R8 to the generation of excited HO2 in\nthe night than simulated is unlikely, which strengthens the importance of Reaction R9. The climatology of the 1,510 nm feature in Fig. 4b indicates semiannual variations with a main maximum in austral summer\n920\nand a secondary maximum in winter. The HO2-related climatologies in Fig. 11 show discrepancies with respect to the seasonal\nvariations. Nevertheless, the highest intensities are also present in summer for Reaction R9. If the first few hours of the night are\nexcluded, this also appears to be true for Reaction R8. The climatologies of these reactions are also characterised by minimum\nintensities in May to June slightly depending on LT. 4.2.2\nHO2 emission\n865 Hence,\n890\nsome contribution of this reaction to the total emission cannot be excluded, but it should not be significantly higher than\nmodelled for equal QYs. This statement refers to the branch of the HO2 production by Reaction R8 related to daytime O3\nphotolysis. The mean intensity after midnight is only 5.0 kR, i.e. 39% of the mean of the full nighttime climatology. However,\nthis value is quite uncertain as our discussion of the nocturnal O2(a1∆g) generation in Sect. 4.1 illustrates. In order to obtain a rough estimate of the quality of our assumptions, we made a simple conversion of the O2(a1∆g) densities\n895\nfrom WACCM (mean midnight profile in Fig. 9d) to emission rates assuming a QY of unity and using an effective Einstein-A\ncoefficient of 2.28 × 10−4 s−1 for the O2(a-X)(0-0) band emission at 1,270 nm (Noll et al., 2016). We then compared the In order to obtain a rough estimate of the quality of our assumptions, we made a simple conversion of the O2(a1∆g) densities\n895\nfrom WACCM (mean midnight profile in Fig. 9d) to emission rates assuming a QY of unity and using an effective Einstein-A\ncoefficient of 2.28 × 10−4 s−1 for the O2(a-X)(0-0) band emission at 1,270 nm (Noll et al., 2016). We then compared the 895 38 The seasonal pattern of Reaction R14 is very different as it indicates The climatology of the 1,510 nm feature in Fig. 4b indicates semiannual variations with a main maximum in austral summer\n920\nand a secondary maximum in winter. The HO2-related climatologies in Fig. 11 show discrepancies with respect to the seasonal\nvariations. Nevertheless, the highest intensities are also present in summer for Reaction R9. If the first few hours of the night are\nexcluded, this also appears to be true for Reaction R8. The climatologies of these reactions are also characterised by minimum\nintensities in May to June slightly depending on LT. The seasonal pattern of Reaction R14 is very different as it indicates a semiannual oscillation with maxima around the equinoxes, which explains the low correlation coefficient in Table 4. This\n925\npattern is obviously related to the important role of O3 in the production of HO2. The similarities are clearly visible in the\ntop row of Fig. 12, where the climatologies of the O3 densities at 80 and 85 km are displayed. Moreover, the bottom row\nof the same figure, which shows H for the same heights, explains the location of the seasonal maxima and minima for the\nother reactions. This makes sense as H is the only strongly variable reactant in the production of HO2 via Reaction R9. a semiannual oscillation with maxima around the equinoxes, which explains the low correlation coefficient in Table 4. This\n925\npattern is obviously related to the important role of O3 in the production of HO2. The similarities are clearly visible in the\ntop row of Fig. 12, where the climatologies of the O3 densities at 80 and 85 km are displayed. Moreover, the bottom row\nof the same figure, which shows H for the same heights, explains the location of the seasonal maxima and minima for the\nother reactions. This makes sense as H is the only strongly variable reactant in the production of HO2 via Reaction R9. a semiannual oscillation with maxima around the equinoxes, which explains the low correlation coefficient in Table 4. This\n925\npattern is obviously related to the important role of O3 in the production of HO2. The similarities are clearly visible in the\ntop row of Fig. 12, where the climatologies of the O3 densities at 80 and 85 km are displayed. https://doi.org/10.5194/egusphere-2023-2087\nPreprint. Discussion started: 28 September 2023\nc⃝Author(s) 2023. CC BY 4.0 License. vertically integrated emission rates with those from SABER measurements in the corresponding channel. For this purpose,\nwe used the 4,496 profiles that were collected for Cerro Paranal by Noll et al. (2017). Next, we performed a similar analysis vertically integrated emission rates with those from SABER measurements in the corresponding channel. For this purpose,\nwe used the 4,496 profiles that were collected for Cerro Paranal by Noll et al. (2017). Next, we performed a similar analysis\nof the nocturnal intensity trend as described by Noll et al. (2016), i.e. we fitted an exponential function and a constant for\n900\nthe time after sunset. As the WACCM data set is quite large, we performed this for each month separately and averaged the\nresults. The fit functions were scaled to the mean of the second half of the night. For the intensities for the entire column\nabove 40 km, these reference constants are 29.7 kR for WACCM and 102.0 kR for SABER. However, the vertical emission\ndistribution for O2(a-X)(0-0) with a centroid emission height of about 89 km around midnight (Noll et al., 2016) is quite\ndifferent from the WACCM-based profile shown in Fig. 9d. Hence, we restricted the comparison to the height range between\n905\n80 and 85 km. Then, we obtain reference intensities of 18.4 kR (62%) for WACCM and 15.4 kR (15%) for SABER. For the pi\ny\np\ny\nof the nocturnal intensity trend as described by Noll et al. (2016), i.e. we fitted an exponential function and a constant for\n900\nthe time after sunset. As the WACCM data set is quite large, we performed this for each month separately and averaged the\nresults. The fit functions were scaled to the mean of the second half of the night. For the intensities for the entire column\nabove 40 km, these reference constants are 29.7 kR for WACCM and 102.0 kR for SABER. However, the vertical emission\ndistribution for O2(a-X)(0-0) with a centroid emission height of about 89 km around midnight (Noll et al., 2016) is quite of the nocturnal intensity trend as described by Noll et al. (2016), i.e. we fitted an exponential function and a constant for\n900\nthe time after sunset. As the WACCM data set is quite large, we performed this for each month separately and averaged the\nresults. The fit functions were scaled to the mean of the second half of the night. For the intensities for the entire column\nabove 40 km, these reference constants are 29.7 kR for WACCM and 102.0 kR for SABER. However, the vertical emission\ndistribution for O2(a-X)(0-0) with a centroid emission height of about 89 km around midnight (Noll et al., 2016) is quite different from the WACCM-based profile shown in Fig. 9d. Hence, we restricted the comparison to the height range between\n905\n80 and 85 km. Then, we obtain reference intensities of 18.4 kR (62%) for WACCM and 15.4 kR (15%) for SABER. For the\nexponential component, we fitted time constants of about 74 and 76 min, which are very close to the radiative lifetime of about\n73 min from the Einstein-A coefficient. For the entire vertical column, the lifetimes decrease to 55 and 50 min in agreement\nwith the results from Noll et al. (2016). The change is related to the higher impact of collisional deactivation at lower altitudes. different from the WACCM-based profile shown in Fig. 9d. Hence, we restricted the comparison to the height range between\n905\n80 and 85 km. Then, we obtain reference intensities of 18.4 kR (62%) for WACCM and 15.4 kR (15%) for SABER. For the\nexponential component, we fitted time constants of about 74 and 76 min, which are very close to the radiative lifetime of about\n73 min from the Einstein-A coefficient. For the entire vertical column, the lifetimes decrease to 55 and 50 min in agreement\nwith the results from Noll et al. (2016). The change is related to the higher impact of collisional deactivation at lower altitudes. In any case, the good agreement of the WACCM and SABER time constants indicate that the related temporal variations are\n910\nwell simulated by WACCM. For the integration from 80 to 85 km, the intensities of the exponential component are 71.8 kR\nfor WACCM and 169.9 kR for SABER 60 min after sunset. As these values are 21 to 22% of the corresponding intensities\nfor the whole column, WACCM also performs quite well with respect to the vertical distribution of O2(a-X)(0-0) produced\nby O3 photolysis. However, the WACCM-related intensity is clearly lower. 1\n2\n3\n4\n5\n6\n7\n8\n9\n10\n11\n12\nMonth\n0.5\n1.0\n1.5\n2.0\nRelative to mean\nX-shooter 1,510 nm intensity\nWACCM HO2 (R9) intensity\nWACCM HO2 (R9) emission at 85 km\nWACCM H density at 85 km\nSABER H density at 85 km\nSABER HO2 (R9) emission at 85 km\nFigure 14. Seasonal variations of monthly averages of time series of the X-shooter-based 1,510 nm intensity (7,931 30 min bins), the\nWACCM HO2 intensity for the dominating Reaction R9 (92,064 time steps), the corresponding HO2 emission rate and H density at 85 km,\nand the SABER-based HO2 emission rate and H density at the same altitude (16,079 profiles) for Cerro Paranal. The different curves (see\nlegend) are provided relative to the mean for the 12 months.\nhttps://doi.org/10.5194/egusphere-2023-2087\nPreprint. Discussion started: 28 September 2023\nc⃝Author(s) 2023. CC BY 4.0 License. 1\n2\n3\n4\n5\n6\n7\n8\n9\n10\n11\n12\nMonth\n0.5\n1.0\n1.5\n2.0\nRelative to mean\nX-shooter 1,510 nm intensity\nWACCM HO2 (R9) intensity\nWACCM HO2 (R9) emission at 85 km\nWACCM H density at 85 km\nSABER H density at 85 km\nSABER HO2 (R9) emission at 85 km\nFigure 14. Seasonal variations of monthly averages of time series of the X-shooter-based 1,510 nm intensity (7,931 30 min bins), the\nWACCM HO2 intensity for the dominating Reaction R9 (92,064 time steps), the corresponding HO2 emission rate and H density at 85 km,\nand the SABER-based HO2 emission rate and H density at the same altitude (16,079 profiles) for Cerro Paranal. The different curves (see\nlegend) are provided relative to the mean for the 12 months. https://doi.org/10.5194/egusphere-2023-2087\nPreprint. Discussion started: 28 September 2023\nc⃝Author(s) 2023. CC BY 4.0 License. https://doi.org/10.5194/egusphere-2023-2087\nPreprint. Discussion started: 28 September 2023\nc⃝Author(s) 2023. CC BY 4.0 License. 1\n2\n3\n4\n5\n6\n7\n8\n9\n10\n11\n12\nMonth\n0.5\n1.0\n1.5\n2.0\nRelative to mean\nX-shooter 1,510 nm intensity\nWACCM HO2 (R9) intensity\nWACCM HO2 (R9) emission at 85 km\nWACCM H density at 85 km\nSABER H density at 85 km\nSABER HO2 (R9) emission at 85 km Figure 14. Seasonal variations of monthly averages of time series of the X-shooter-based 1,510 nm intensity (7,931 30 min bins), the\nWACCM HO2 intensity for the dominating Reaction R9 (92,064 time steps), the corresponding HO2 emission rate and H density at 85 km,\nand the SABER-based HO2 emission rate and H density at the same altitude (16,079 profiles) for Cerro Paranal. The different curves (see\nlegend) are provided relative to the mean for the 12 months. feature (Table 4). Hence, this pathway (despite some similarities with the Fe-related emissions discussed in Sect. 4.2.1) does\nnot appear to be a suitable contributor to the FeO(VIS) continuum component. In order to also identify H as the main driver of the climatological variations of the 1,510 nm feature, we need to find the\nreason for the missing secondary maximum in the WACCM simulation in winter. Mlynczak et al. (2014) performed global H\n935\nretrievals based on the 2.1 µm channel of SABER (Russell et al., 1999). As a result, they found semiannual seasonal variations\nat 84 km and a latitude of 16.5◦S with a secondary maximum in austral summer. 1\n2\n3\n4\n5\n6\n7\n8\n9\n10\n11\n12\nMonth\n0.5\n1.0\n1.5\n2.0\nRelative to mean\nX-shooter 1,510 nm intensity\nWACCM HO2 (R9) intensity\nWACCM HO2 (R9) emission at 85 km\nWACCM H density at 85 km\nSABER H density at 85 km\nSABER HO2 (R9) emission at 85 km\nFigure 14. Seasonal variations of monthly averages of time series of the X-shooter-based 1,510 nm intensity (7,931 30 min bins), the\nWACCM HO2 intensity for the dominating Reaction R9 (92,064 time steps), the corresponding HO2 emission rate and H density at 85 km,\nand the SABER-based HO2 emission rate and H density at the same altitude (16,079 profiles) for Cerro Paranal. The different curves (see\nlegend) are provided relative to the mean for the 12 months.\nhttps://doi.org/10.5194/egusphere-2023-2087\nPreprint. Discussion started: 28 September 2023\nc⃝Author(s) 2023. CC BY 4.0 License. This pattern was confirmed by a comparison\nwith older results at 20◦S from Thomas (1990) based on measurements with the near-IR spectrometer on the Solar Mesosphere\nExplorer. Mlynczak et al. (2018) improved the OH-based retrieval algorithm for O and H, which reduced the densities. We In order to also identify H as the main driver of the climatological variations of the 1,510 nm feature, we need to find the\nreason for the missing secondary maximum in the WACCM simulation in winter. Mlynczak et al. (2014) performed global H\n935\nretrievals based on the 2.1 µm channel of SABER (Russell et al., 1999). As a result, they found semiannual seasonal variations\nat 84 km and a latitude of 16.5◦S with a secondary maximum in austral summer. This pattern was confirmed by a comparison\nwith older results at 20◦S from Thomas (1990) based on measurements with the near-IR spectrometer on the Solar Mesosphere\nExplorer. Mlynczak et al. (2018) improved the OH-based retrieval algorithm for O and H, which reduced the densities. We 935 already used this data set for the years 2002 to 2014 for an analysis of K emissions above Cerro Paranal (Noll et al., 2019). 940\nThis allows us to reuse these data for the study of the seasonal H variations. For this purpose, we calculated simple monthly\nmean values for the SABER and WACCM time series. For an altitude of 85 km, Fig. 14 confirms that there is a weak sec-\nondary maximum in the SABER H density. Moreover, the primary peak in summer is more pronounced than in the WACCM\nsimulation. In the next step, we compared HO2 emission rates. For the dominating Reaction R9, these were calculated from the SABER densities of H and air and the rate coefficients in Table 3. Only the weakly-varying O2 volume mixing ratio was\n945\ntaken from WACCM. The results for 85 km are also presented in Fig. 14. The deviations from the variations of H are small and\nsimilar for both data sets, which illustrates the dominating role of H for the HO2 emission variability. The comparison of the\nWACCM HO2 emission at 85 km and for the entire vertical column indicates a smoothing of the seasonal pattern in the latter\ncase. Moreover, the bottom row\nof the same figure, which shows H for the same heights, explains the location of the seasonal maxima and minima for the\nother reactions. This makes sense as H is the only strongly variable reactant in the production of HO2 via Reaction R9. As Reaction R8 requires the previous generation of HO2, there is also an impact of the H variability on this reaction. It also\n930\nexplains why the climatology of Reaction R14 still better correlates with the variations of the 1,510 nm feature than the 595 nm As Reaction R8 requires the previous generation of HO2, there is also an impact of the H variability on this reaction. It also\n930\nexplains why the climatology of Reaction R14 still better correlates with the variations of the 1,510 nm feature than the 595 nm 39 1\n2\n3\n4\n5\n6\n7\n8\n9\n10\n11\n12\nMonth\n0.5\n1.0\n1.5\n2.0\nRelative to mean\nX-shooter 1,510 nm intensity\nWACCM HO2 (R9) intensity\nWACCM HO2 (R9) emission at 85 km\nWACCM H density at 85 km\nSABER H density at 85 km\nSABER HO2 (R9) emission at 85 km\nFigure 14. Seasonal variations of monthly averages of time series of the X-shooter-based 1,510 nm intensity (7,931 30 min bins), the\nWACCM HO2 intensity for the dominating Reaction R9 (92,064 time steps), the corresponding HO2 emission rate and H density at 85 km,\nand the SABER-based HO2 emission rate and H density at the same altitude (16,079 profiles) for Cerro Paranal. The different curves (see\nlegend) are provided relative to the mean for the 12 months.\nhttps://doi.org/10.5194/egusphere-2023-2087\nPreprint. Discussion started: 28 September 2023\nc⃝Author(s) 2023. CC BY 4.0 License. We cannot test the same for the SABER data as the noise in the H retrievals quickly increases at lower altitudes due to the weaker emission of the OH(8-6) and OH(9-7) bands that were essentially used for the derivation of the H density (Mlynczak\n950 40 https://doi.org/10.5194/egusphere-2023-2087\nPreprint. Discussion started: 28 September 2023\nc⃝Author(s) 2023. CC BY 4.0 License. et al., 2018). This is also the main reason why the decreasing nocturnal trend in the HO2 emission could not be studied in this\nway. Figure 12 indicates that this trend is obviously generated distinctly lower than 85 km. Nevertheless, if we assume that the\nsmoothing in the seasonal pattern in the WACCM data is similar for the observations, it is likely that we would obtain a vari-\nability structure that resembles the curve for the 1,510 nm feature plotted in Fig. 14. Hence, the differences between modelled\nand observed emission variations appear to be mostly caused by the WACCM-based reproduction of temporal changes in the\n955 O, which is crucial for the upper limit of 84 km, is not involved in the chemical production of excited HO2 for this pathway. 960\nThe simulated climatological variations show increasing heights during the night and the highest values in austral summer with\nmaximum deviations from the mean lower than 2 km in most cases. The emission of Reaction R8 just reaches 80 km close\nto sunrise, whereas the centroid heights are even below 70 km at the beginning of the night due to the high concentrations of\nO2(a1∆g) related to daytime O3 photolysis in the lower mesosphere (Noll et al., 2016). Reaction R14 shows a similar vari- ability pattern as Reaction R9 but with a mean value of 86 km the emission is too high. The reason is the impact of O3, which\n965\nshows its density peak at a higher altitude than H in the mesopause region in Fig. 9d. This plot also indicates that the density\ndistribution of all HO2 peaks at 78 km, which is lower than the emission maximum of excited HO2 shown in Fig. 9c. Finally, Table 4 shows that at least the results for Reactions R8 and R9 appear to agree with a positive but weak solar cycle\neffect that was derived for the 1,510 nm feature in Sect. 3.4. Although the uncertainties are of the order of several per cent, the almost doubled deviation from the measured value compared to the other reactions, make Reaction R14 less likely with respect\n970\nto the response to solar activity. Our investigation of the three proposed production mechanisms for excited HO2 shows promising results. https://doi.org/10.5194/egusphere-2023-2087\nPreprint. Discussion started: 28 September 2023\nc⃝Author(s) 2023. CC BY 4.0 License. It is likely that\nHO2 is the radiating molecule X that produces the 1,510 nm feature and the strongly correlated X(NIR) continuum. Moreover,\nthe recombination reaction of H and O2 with participation of an additional collision partner is the most probable production almost doubled deviation from the measured value compared to the other reactions, make Reaction R14 less likely with respect\n970\nto the response to solar activity. Our investigation of the three proposed production mechanisms for excited HO2 shows promising results. It is likely that\nHO2 is the radiating molecule X that produces the 1,510 nm feature and the strongly correlated X(NIR) continuum. Moreover,\nthe recombination reaction of H and O2 with participation of an additional collision partner is the most probable production process for excited HO2. All investigated properties such as total emission, nocturnal and seasonal variations, emission heights,\n975\nand solar cycle effect point to this interpretation. It also helps that chemiluminescence by this mechanism was already observed\nin the laboratory between about 800 and 1,550 nm (Holstein et al., 1983), although an extension to higher wavelengths would\nbe important to test the presence of the 1,620 nm feature (Fig. 3). Reaction R8 that involves O2(a1∆g) can only be a minor\nemission source, otherwise the observed nocturnal trend would not fit. It is also more challenging to produce emission below process for excited HO2. All investigated properties such as total emission, nocturnal and seasonal variations, emission heights,\n975\nand solar cycle effect point to this interpretation. It also helps that chemiluminescence by this mechanism was already observed\nin the laboratory between about 800 and 1,550 nm (Holstein et al., 1983), although an extension to higher wavelengths would\nbe important to test the presence of the 1,620 nm feature (Fig. 3). Reaction R8 that involves O2(a1∆g) can only be a minor\nemission source, otherwise the observed nocturnal trend would not fit. It is also more challenging to produce emission below 1,270 nm for this process. Finally, Reaction R14 that involves O3 shows clear discrepancies in the emission properties which\n980\ncan only be tolerated if the contribution to the total emission is very small. 41 5\nConclusions Own simulations of\nthe chemiluminescence from the reaction of Fe and O3 with WACCM can reproduce most of the measured properties of the and found a weakly positive relation. Using an approach for the estimate of effective emission heights based on the analysis of\n990\na strong passing Q2DW that was initially developed for OH lines, we obtained a range for the mean centroid height between\nabout 85 and 89 km. In previous studies, the feature at 595 nm was identified as the main peak of the FeO orange bands. Own simulations of\nthe chemiluminescence from the reaction of Fe and O3 with WACCM can reproduce most of the measured properties of the emission, which suggests that the NMF component dominating the X-shooter VIS arm could have contributions from various\n995\nFeO bands. However, WACCM returns a maximum mean intensity of only 170 R, whereas the whole correlated spectrum could\nhave 2.9 kR. We discovered that potential OFeOH emission (with unknown spectral distribution) from the reaction between\nFeOH and O3 would have a very similar climatology according to our simulations. Nevertheless, this reaction would only add\nup to 220 R. Therefore, a major discrepancy remains. If there is another emitter, the basic precondition for a good correlation with the 595 nm feature appears to be that the variability is mainly determined by O3. 1000\nThe second continuum component dominates the X-shooter NIR arm. In particular, a strong narrow peak at about 1,510 nm\nand a secondary feature at about 1,620 nm were found, which indicates a complex band system. Our best estimate of the\naverage intensity of the entire system is about 12 kR. The seasonal variations with maxima near the solstices are actually in\nopposition to those of the 595 nm feature. There is also a clear decrease of the intensity in the course of the night for the entire year. The solar cycle effect is only weakly positive and the average effective emission height appears to be most likely between\n1005\nabout 80 and 84 km for the 1,510 nm feature. The most promising candidate for the emitter is HO2. Existing near-IR spectra from the laboratory suggest that the 1,510 nm\nfeature could be the vibrational (200-000) transition of the electronic ground state 2A′′. 5\nConclusions There would also be an explanation\nof the enhanced emission near 1,270 nm, where only a part appears to be due to residual O2 emission. Other features from year. The solar cycle effect is only weakly positive and the average effective emission height appears to be most likely between\n1005\nabout 80 and 84 km for the 1,510 nm feature. The most promising candidate for the emitter is HO2. Existing near-IR spectra from the laboratory suggest that the 1,510 nm\nfeature could be the vibrational (200-000) transition of the electronic ground state 2A′′. There would also be an explanation\nof the enhanced emission near 1,270 nm, where only a part appears to be due to residual O2 emission. Other features from of the enhanced emission near 1,270 nm, where only a part appears to be due to residual O2 emission. Other features from\nthe experiments could not be checked due to gaps in our continuum spectrum. We investigated different potential production\n1010\nprocesses of excited HO2 with WACCM. The recombination reaction between H and O2 under participation of another col-\nlision partner showed the best performance. It is the main production process of HO2 in the mesosphere. With a modelled\nmaximum mean radiance of 82 kR, a moderate quantum yield of the reaction would be sufficient to produce the continuum in\nthe X-shooter NIR arm. Moreover, this process indicates the best agreement with respect to the climatological variations. Re-\nmaining discrepancies (especially a missing secondary peak in austral winter) can be explained by deviations of the modelled\n1015 the experiments could not be checked due to gaps in our continuum spectrum. We investigated different potential production\n1010\nprocesses of excited HO2 with WACCM. The recombination reaction between H and O2 under participation of another col-\nlision partner showed the best performance. It is the main production process of HO2 in the mesosphere. With a modelled\nmaximum mean radiance of 82 kR, a moderate quantum yield of the reaction would be sufficient to produce the continuum in\nthe X-shooter NIR arm. Moreover, this process indicates the best agreement with respect to the climatological variations. Re-\nmaining discrepancies (especially a missing secondary peak in austral winter) can be explained by deviations of the modelled\n1015 the experiments could not be checked due to gaps in our continuum spectrum. We investigated different potential production\n1010\nprocesses of excited HO2 with WACCM. 5\nConclusions Our analysis of the nightglow (pseudo-)continuum with high-quality X-shooter data essentially reveals two contributions in\nthe wavelength range between 300 and 1,800 nm if remnants from different O2 bands are excluded. Our results of the correlation analysis of continuum structures and non-negative matrix factorisation (NMF) of the contin-\n985\nuum variability show that the peak at 595 nm is well correlated with other features and the underlying continuum in a wide\nwavelength range, especially between about 500 and 900 nm. The variations as mainly studied for the feature at 595 nm reveal\na climatology with a mixture of semiannual and annual oscillation with a main maximum in April/May and a main minimum in\nJanuary that confirms previous results based on a smaller sample. For the first time, we estimated the effective solar cycle effect Our results of the correlation analysis of continuum structures and non-negative matrix factorisation (NMF) of the contin-\n985\nuum variability show that the peak at 595 nm is well correlated with other features and the underlying continuum in a wide\nwavelength range, especially between about 500 and 900 nm. The variations as mainly studied for the feature at 595 nm reveal\na climatology with a mixture of semiannual and annual oscillation with a main maximum in April/May and a main minimum in\nJanuary that confirms previous results based on a smaller sample. For the first time, we estimated the effective solar cycle effect and found a weakly positive relation. Using an approach for the estimate of effective emission heights based on the analysis of\n990\na strong passing Q2DW that was initially developed for OH lines, we obtained a range for the mean centroid height between\nabout 85 and 89 km. In previous studies, the feature at 595 nm was identified as the main peak of the FeO orange bands. Own simulations of\nthe chemiluminescence from the reaction of Fe and O3 with WACCM can reproduce most of the measured properties of the and found a weakly positive relation. Using an approach for the estimate of effective emission heights based on the analysis of\n990\na strong passing Q2DW that was initially developed for OH lines, we obtained a range for the mean centroid height between\nabout 85 and 89 km. In previous studies, the feature at 595 nm was identified as the main peak of the FeO orange bands. 5\nConclusions The recombination reaction between H and O2 under participation of another col-\nlision partner showed the best performance. It is the main production process of HO2 in the mesosphere. With a modelled\nmaximum mean radiance of 82 kR, a moderate quantum yield of the reaction would be sufficient to produce the continuum in\nthe X-shooter NIR arm. Moreover, this process indicates the best agreement with respect to the climatological variations. Re- 42 The NIR-arm data were already used for the study of OH emission lines (Noll\net al., 2022a, 2023b). Some results of these investigations, which are available via the public repository Zenodo (Noll et al., 2022b, 2023c),\nwere also considered for this study. We performed dedicated WACCM6 runs with modified chemistry for the years from 2003 to 2014. Data availability. The basic X-shooter data for this project originate from the ESO Science Archive Facility at http://archive.eso.org and are\n1030\nrelated to various observing programmes that were carried out between October 2009 and September 2019. The raw spectra were processed\n(using the corresponding calibration data) and then analysed. The NIR-arm data were already used for the study of OH emission lines (Noll\net al., 2022a, 2023b). Some results of these investigations, which are available via the public repository Zenodo (Noll et al., 2022b, 2023c),\nwere also considered for this study. We performed dedicated WACCM6 runs with modified chemistry for the years from 2003 to 2014. The crucial results are stored at the University of Leeds. We also made use of TIMED/SABER data sets that were already collected for\n1035\nprevious studies for Cerro Paranal from the SABER website at http://saber.gats-inc.com. These are the v2.0 products from 2002 to 2015\nanalysed by Noll et al. (2017) and the improved O and H retrievals described by Mlynczak et al. (2018) for the years 2002 to 2014 that\nwere used by Noll et al. (2019). Results from the study of v2.0 products from January and February 2017 by Noll et al. (2022a) were\nalso considered. A comprehensive collection of data of our analysis (especially with respect to the plotted data) is provided by Zenodo at\nhttps://zenodo.org/record/8335836 (Noll et al., 2023a). 1040 The crucial results are stored at the University of Leeds. We also made use of TIMED/SABER data sets that were already collected for\n1035\nprevious studies for Cerro Paranal from the SABER website at http://saber.gats-inc.com. These are the v2.0 products from 2002 to 2015\nanalysed by Noll et al. (2017) and the improved O and H retrievals described by Mlynczak et al. (2018) for the years 2002 to 2014 that\nwere used by Noll et al. (2019). Results from the study of v2.0 products from January and February 2017 by Noll et al. (2022a) were\nalso considered. https://doi.org/10.5194/egusphere-2023-2087\nPreprint. Discussion started: 28 September 2023\nc⃝Author(s) 2023. CC BY 4.0 License. H densities from those of SABER-based retrievals. The simulated weak solar cycle effect and the average centroid emission\nheight of about 81 km also show good agreement. Finally, the observed chemiluminescence in the laboratory for this mecha-\nnism indicated emission down to about 800 nm, which is consistent with the shape of the derived continuum component. As\nwavelengths above about 1,550 nm were not studied in the only known laboratory experiment, there is no evidence of the exis-\ntence of the 1,620 nm feature, so far. The other studied potential emission processes appear to be much less efficient. Relatively\n020\nweak or even negligible emission rates are probably related to the direct radiative recombination of H and O2, the reaction of\nH and O3, and collisions of HO2 with O2(a1∆g). The latter would produce a steep decline of the emission after dusk due to\nthe decay of the population of excited O2 molecules produced by O3 photolysis, which is not observed in the X-shooter data. The reaction involving H and O3 would generate a very different seasonal variability as observed. H densities from those of SABER-based retrievals. The simulated weak solar cycle effect and the average centroid emission\nheight of about 81 km also show good agreement. Finally, the observed chemiluminescence in the laboratory for this mecha-\nnism indicated emission down to about 800 nm, which is consistent with the shape of the derived continuum component. As\nwavelengths above about 1,550 nm were not studied in the only known laboratory experiment, there is no evidence of the exis- tence of the 1,620 nm feature, so far. The other studied potential emission processes appear to be much less efficient. Relatively\n1020\nweak or even negligible emission rates are probably related to the direct radiative recombination of H and O2, the reaction of\nH and O3, and collisions of HO2 with O2(a1∆g). The latter would produce a steep decline of the emission after dusk due to\nthe decay of the population of excited O2 molecules produced by O3 photolysis, which is not observed in the X-shooter data. The reaction involving H and O3 would generate a very different seasonal variability as observed. tence of the 1,620 nm feature, so far. The other studied potential emission processes appear to be much less efficient. Relatively\n1020\nweak or even negligible emission rates are probably related to the direct radiative recombination of H and O2, the reaction of\nH and O3, and collisions of HO2 with O2(a1∆g). The latter would produce a steep decline of the emission after dusk due to\nthe decay of the population of excited O2 molecules produced by O3 photolysis, which is not observed in the X-shooter data. The reaction involving H and O3 would generate a very different seasonal variability as observed. tence of the 1,620 nm feature, so far. The other studied potential emission processes appear to be much less efficient. Relatively\n1020\nweak or even negligible emission rates are probably related to the direct radiative recombination of H and O2, the reaction of\nH and O3, and collisions of HO2 with O2(a1∆g). The latter would produce a steep decline of the emission after dusk due to\nthe decay of the population of excited O2 molecules produced by O3 photolysis, which is not observed in the X-shooter data. The reaction involving H and O3 would generate a very different seasonal variability as observed. The intriguing discoveries of this study will certainly trigger further investigations for a better understanding of the chemistry\n1025\nand dynamics in the Earth’s mesopause region. The origin of the whole VIS-arm continuum still needs to be solved. The study\nalso revealed that the nighttime production of O2(a1∆g) is not understood well, although these excited molecules are essential\nfor the strong emission at 1,270 nm. These examples illustrate that there are still many things at these altitudes that we do not\nknow. The intriguing discoveries of this study will certainly trigger further investigations for a better understanding of the chemistry\n1025\nand dynamics in the Earth’s mesopause region. The origin of the whole VIS-arm continuum still needs to be solved. The study\nalso revealed that the nighttime production of O2(a1∆g) is not understood well, although these excited molecules are essential\nfor the strong emission at 1,270 nm. These examples illustrate that there are still many things at these altitudes that we do not\nknow. Data availability. The basic X-shooter data for this project originate from the ESO Science Archive Facility at http://archive.eso.org and are\n1030\nrelated to various observing programmes that were carried out between October 2009 and September 2019. The raw spectra were processed\n(using the corresponding calibration data) and then analysed. A comprehensive collection of data of our analysis (especially with respect to the plotted data) is provided by Zenodo at\nhttps://zenodo.org/record/8335836 (Noll et al., 2023a). 1040 The crucial results are stored at the University of Leeds. We also made use of TIMED/SABER data sets that were already collected for\n1035\nprevious studies for Cerro Paranal from the SABER website at http://saber.gats-inc.com. These are the v2.0 products from 2002 to 2015\nanalysed by Noll et al. (2017) and the improved O and H retrievals described by Mlynczak et al. (2018) for the years 2002 to 2014 that\nwere used by Noll et al. (2019). Results from the study of v2.0 products from January and February 2017 by Noll et al. (2022a) were\nalso considered. A comprehensive collection of data of our analysis (especially with respect to the plotted data) is provided by Zenodo at\nhttps://zenodo.org/record/8335836 (Noll et al., 2023a). 1040 Author contributions. SN designed and organised the project, performed the preparation and analysis of the X-shooter spectra, visualised\nthe results based on X-shooter, WACCM, and SABER data, and is the main author of the paper text. The co-authors contributed to the\nimprovement of the paper content. Moreover, JP designed the WACCM runs, investigated the involved chemistry, and significantly influenced\nthe scientific discussion. WF performed the WACCM simulations and a preliminary analysis of the data. KK significantly contributed to the\ndiscussion of the chemistry. In particular, he first proposed HO2 as possible emitter. WK carried out the basic processing of the X-shooter\n1045\nspectra. CS contributed to the discussion of the X-shooter-based analysis. MB was involved in the management of the project. SK managed\nthe infrastructure for the processing and storage of the X-shooter data and contributed to the discussion of the measured continuum features. discussion of the chemistry. In particular, he first proposed HO2 as possible emitter. WK carried out the basic processing of the X-shooter\n1045\nspectra. CS contributed to the discussion of the X-shooter-based analysis. MB was involved in the management of the project. SK managed\nthe infrastructure for the processing and storage of the X-shooter data and contributed to the discussion of the measured continuum features. 43 References H.: Chemiluminescent Reactions\nof Nickel, Iron, and Cobalt Carbonyls with Ozone, Appl. Spectrosc., 60, 99–102, https://doi.org/10.1366/000370206775382730, 2006. kh ld\nS\nd\nS\nAbb\nk\ni\nlb C\nl\nO ki\nil\nh\nd\ni of Nickel, Iron, and Cobalt Carbonyls with Ozone, Appl. Spectrosc., 60, 99–102, https://doi.org/10.1366/000370206775382730, 2006. Burkholder, J. B., Sander, S. P., Abbatt, J., Barker, J. R., Huie, R. E., Kolb, C. E., Kurylo, M. J., Orkin, V. L., Wilmouth, D. M., and Wine,\nP. H.: Chemical Kinetics and Photochemical Data for Use in Atmospheric Studies, Evaluation No. 18, JPL Publ. 15-10, Jet Propulsion\nLaboratory Pasadena http://jpldataeval jpl nasa gov 2015\n1075 Laboratory, Pasadena, http://jpldataeval.jpl.nasa.gov, 2015. 1075\nCarrillo-Sánchez, J. D., Nesvorný, D., Pokorný, P., Janches, D., and Plane, J. M. C.: Sources of cosmic dust in the Earth’s atmosphere,\nGeophys. Res. Lett., 43, 11,979–11,986, https://doi.org/10.1002/2016GL071697, 2016. Cheung, A. S. C., Lyyra, A. M., Merer, A. J., and Taylor, A. W.: Laser spectroscopy of FeO: Rotational analysis of some subbands of the\norange system, J. Mol. Spectrosc., 102, 224–257, https://doi.org/10.1016/0022-2852(83)90240-0, 1983. Carrillo-Sánchez, J. D., Nesvorný, D., Pokorný, P., Janches, D., and Plane, J. M. C.: Sources of cosmic dust in the Earth’s atmosphere,\nGeophys. Res. Lett., 43, 11,979–11,986, https://doi.org/10.1002/2016GL071697, 2016. Cheung, A. S. C., Lyyra, A. M., Merer, A. J., and Taylor, A. W.: Laser spectroscopy of FeO: Rotational analysis of some subbands of the Carrillo-Sánchez, J. D., Nesvorný, D., Pokorný, P., Janches, D., and Plane, J. M. C.: Sources of cosmic dust in the Earth’s atmosphere,\nGeophys. Res. Lett., 43, 11,979–11,986, https://doi.org/10.1002/2016GL071697, 2016. Cheung, A. S. C., Lyyra, A. M., Merer, A. J., and Taylor, A. W.: Laser spectroscopy of FeO: Rotational analysis of some subbands of the\norange system, J. Mol. Spectrosc., 102, 224–257, https://doi.org/10.1016/0022-2852(83)90240-0, 1983. Clancy, R. T., Sandor, B. J., Rusch, D. W., and Muhleman, D. O.: Microwave observations and modeling of O3, H2O, and HO2 in the\n1080\nmesosphere, J. Geophys. Res., 99, 5465–5474, https://doi.org/10.1029/93JD03471, 1994. mesosphere, J. Geophys. Res., 99, 5465–5474, https://doi.org/10.1029/93JD03471, 1994. Clough, P. N. and Thrush, B. A.: Mechanism of chemiluminescent reaction between nitric oxide and ozone, Trans. Faraday Soc., 63, 915–925,\nhttps://doi.org/10.1039/TF9676300915, 1967. Clough, P. N. and Thrush, B. A.: Mechanism of chemiluminescent reaction between nitric oxide and ozone, Trans. Faraday Soc., 63, 915–925,\nhttps://doi.org/10.1039/TF9676300915, 1967. Cosby, P. C., Sharpee, B. D., Slanger, T. G., Huestis, D. L., and Hanuschik, R. https://doi.org/10.5194/egusphere-2023-2087\nPreprint. Discussion started: 28 September 2023\nc⃝Author(s) 2023. CC BY 4.0 License. https://doi.org/10.5194/egusphere-2023-2087\nPreprint. Discussion started: 28 September 2023\nc⃝Author(s) 2023. CC BY 4.0 License. https://doi.org/10.5194/egusphere-2023-2087\nPreprint. Discussion started: 28 September 2023\nc⃝Author(s) 2023. CC BY 4.0 License. https://doi.org/10.5194/egusphere-2023-2087\nPreprint. Discussion started: 28 September 2023\nc⃝Author(s) 2023. CC BY 4.0 License. Competing interests. Co-author John Plane is a member of the editorial board of Atmospheric Chemistry and Physics. The authors do not\nhave other competing interests to declare. Acknowledgements. Stefan Noll was financed by the project NO 1328/1-3 of the German Research Foundation (DFG). John Plane and Wuhu\n1050\nFeng were supported by grant NE/T006749/1 from the UK Natural Environment Research Council. We thank Sabine Möhler from ESO for\nher support with respect to the X-shooter calibration data. 44 44 References Barbier, D., Dufay, J., and Williams, D.: Recherches sur l’émission de la raie verte du Ciel nocturne, Ann. Astrophys., 14, 392, 1951. Barbier, D., Dufay, J., and Williams, D.: Recherches sur l’émission de la raie verte du Ciel nocturne, Ann. Astrophys., 14, 392, 1951. Barnes, M., Fraser, M. M., Hajigeorgiou, P. G., and Merer, A. J.: Isotope and Hyperfine Structure in the “Orange” System of FeO: Evidence\n1055\nfor Two 5∆i Excited States, J. Mol. Spectrosc., 170, 449–465, https://doi.org/10.1006/jmsp.1995.1084, 1995. Bates, D. R.: Cause of Terrestrial Nightglow Continuum, Proc. R. Soc. Lond. A, 443, 227–237, https://doi.org/10.1098/rspa.1993.0141, 1993. Becker, K. H., Groth, W., and Thran, D.: The mechanism of the air-afterglow NO + O →NO 2 + hν, Chem. Phys. Lett., 15, 215–220,\nhttps://doi.org/10.1016/0009-2614(72)80152-0, 1972. Becker, K. H., Fink, E. H., Langen, P., and Schurath, U.: Near infrared emission bands of the HO2 radical, J. Chem. Phys., 60, 4623–4625,\n1065\nhttps://doi.org/10.1063/1.1680950, 1974. Becker, K. H., Fink, E. H., Langen, P., and Schurath, U.: Near infrared emission bands of the HO2 radical, J. Chem. Phys., 60, 4623–4625,\n1065\nhttps://doi.org/10.1063/1.1680950, 1974. Becker, K. H., Fink, E. H., Leiss, A., and Schurath, U.: A study of the near infrared emission bands of the hydroperoxyl radical at medium\nresolution, Chem. Phys. Lett., 54, 191–196, https://doi.org/10.1016/0009-2614(78)85694-2, 1978. B\ndf\nt\nA\nL\nd\nK\nd ll\nK\nR\nTh\ni\nl\nt\n3100 10 000\nA\nJ\nG\nh\nR\n73\n426 https://doi.org/10.1063/1.1680950, 1974. Becker, K. H., Fink, E. H., Leiss, A., and Schurath, U.: A study of the near infrared emission bands of the hydroperoxyl radical at medium\nresolution, Chem. Phys. Lett., 54, 191–196, https://doi.org/10.1016/0009-2614(78)85694-2, 1978. Broadfoot,\nA. L. and\nKendall,\nK. R.:\nThe\nairglow\nspectrum,\n3100-10,000\nA,\nJ. Geophys. Res.,\n73,\n426,\nhttps://doi.org/10.1029/JA073i001p00426, 1968. 1070 https://doi.org/10.1029/JA073i001p00426, 1968. 1070\nBurgard, D. A., Abraham, J., Allen, A., Craft, J., Foley, W., Robinson, J., Wells, B., Xu, C., and Stedman, D. H.: Chemiluminescent Reactions\nof Nickel, Iron, and Cobalt Carbonyls with Ozone, Appl. Spectrosc., 60, 99–102, https://doi.org/10.1366/000370206775382730, 2006. Burkholder, J. B., Sander, S. P., Abbatt, J., Barker, J. R., Huie, R. E., Kolb, C. E., Kurylo, M. J., Orkin, V. L., Wilmouth, D. M., and Wine,\nP. H.: Chemical Kinetics and Photochemical Data for Use in Atmospheric Studies, Evaluation No. 18, JPL Publ. 15-10, Jet Propulsion Burgard, D. A., Abraham, J., Allen, A., Craft, J., Foley, W., Robinson, J., Wells, B., Xu, C., and Stedman, D. https://doi.org/10.5194/egusphere-2023-2087\nPreprint. Discussion started: 28 September 2023\nc⃝Author(s) 2023. CC BY 4.0 License. https://doi.org/10.5194/egusphere-2023-2087\nPreprint. Discussion started: 28 September 2023\nc⃝Author(s) 2023. CC BY 4.0 License. Davis, T. N. and Smith, L. L.: Latitudinal and Seasonal Variations in the Night Airglow, J. Geophys. Res., 70, 1127–1138,\nhttps://doi.org/10.1029/JZ070i005p01127, 1965. 1090 Dawkins, E. C. M., Plane, J. M. C., Chipperfield, M. P., Feng, W., Marsh, D. R., Höffner, J., and Janches, D.: Solar cycle response and\nlong-term trends in the mesospheric metal layers, J. Geophys. Res. Space Phys., 121, 7153–7165, https://doi.org/10.1002/2016JA022522,\n2016. Dekker, H., D’Odorico, S., Kaufer, A., Delabre, B., and Kotzlowski, H.: Design, construction, and performance of UVES, the echelle\nspectrograph for the UT2 Kueyen Telescope at the ESO Paranal Observatory, in: Optical and IR Telescope Instrumentation and Detectors,\nedited by Iye M and Moorwood A F vol 4008 of SPIE Proc Ser pp 534–545 https://doi org/10 1117/12 395512 2000 Dekker, H., D’Odorico, S., Kaufer, A., Delabre, B., and Kotzlowski, H.: Design, construction, and perfo spectrograph for the UT2 Kueyen Telescope at the ESO Paranal Observatory, in: Optical and IR Telescope Instrumentation and Detectors,\n1095\nedited by Iye, M. and Moorwood, A. F., vol. 4008 of SPIE Proc. Ser., pp. 534–545, https://doi.org/10.1117/12.395512, 2000. Ellis, S. C., Bland-Hawthorn, J., Lawrence, J., Horton, A. J., Trinh, C., Leon-Saval, S. G., Shortridge, K., Bryant, J., Case, S., Colless, M.,\nCouch, W., Freeman, K., Gers, L., Glazebrook, K., Haynes, R., Lee, S., Löhmannsröben, H. G., O’Byrne, J., Miziarski, S., Roth, M.,\nSchmidt, B., Tinney, C. G., and Zheng, J.: Suppression of the near-infrared OH night-sky lines with fibre Bragg gratings - first results, spectrograph for the UT2 Kueyen Telescope at the ESO Paranal Observatory, in: Optical and IR Telescope Instrumentation and Detectors,\n5\nedited by Iye, M. and Moorwood, A. F., vol. 4008 of SPIE Proc. Ser., pp. 534–545, https://doi.org/10.1117/12.395512, 2000. Couch, W., Freeman, K., Gers, L., Glazebrook, K., Haynes, R., Lee, S., Löhmannsröben, H. G., O’Byrne, J., Miziarski, S., Roth, M., Schmidt, B., Tinney, C. G., and Zheng, J.: Suppression of the near-infrared OH night-sky lines with fibre Bragg gratings - first results,\nMon. Not. R. Astron. Soc., 425, 1682–1695, https://doi.org/10.1111/j.1365-2966.2012.21602.x, 2012. 1100 Mon. Not. R. Astron. Soc., 425, 1682–1695, https://doi.org/10.1111/j.1365-2966.2012.21602.x, 2012. 1100\nEndres, S. C., Sandrock, C., and Focke, W. W.: A simplicial homology algorithm for Lipschitz optimisation, J. Glob. Optim., 72, 181–217,\nhttps://doi.org/10.1007/s10898-018-0645-y, 2018. Ern, M., Preusse, P., Kalisch, S., Kaufmann, M., and Riese, M.: Role of gravity waves in the forcing of quasi two-day waves in the meso-\nsphere: An observational study, J. Geophys. Res. Atmos., 118, 3467–3485, https://doi.org/10.1029/2012JD018208, 2013. Endres, S. C., Sandrock, C., and Focke, W. W.: A simplicial homology algorithm for Lipschitz optimisation, J. Glob. Optim., 72, 181–217,\nhttps://doi.org/10.1007/s10898-018-0645-y, 2018. p\ng\ny\nErn, M., Preusse, P., Kalisch, S., Kaufmann, M., and Riese, M.: Role of gravity waves in the forcing of quasi two-day waves in the meso-\nsphere: An observational study, J. Geophys. Res. Atmos., 118, 3467–3485, https://doi.org/10.1029/2012JD018208, 2013. Evans, W. F. J., Gattinger, R. L., Slanger, T. G., Saran, D. V., Degenstein, D. A., and Llewellyn, E. J.: Discovery of the FeO or-\n1105\nange bands in the terrestrial night airglow spectrum obtained with OSIRIS on the Odin spacecraft, Geophys. Res. Lett., 37, L22105,\nhttps://doi.org/10.1029/2010GL045310, 2010. Evans, W. F. J., Gattinger, R. L., Broadfoot, A. L., and Llewellyn, E. J.: The observation of chemiluminescent NiO* emissions in the g\ng\ng\np\np\n,\np y\n,\n,\n,\nhttps://doi.org/10.1029/2010GL045310, 2010. Evans, W. F. J., Gattinger, R. L., Broadfoot, A. L., and Llewellyn, E. J.: The observation of chemiluminescent NiO* emissions in the\nlaboratory and in the night airglow, Atmos. Chem. Phys., 11, 9595–9603, https://doi.org/10.5194/acp-11-9595-2011, 2011. Evans, W. F. J., Gattinger, R. L., Broadfoot, A. L., and Llewellyn, E. J.: The observation of chemiluminescent NiO* emissions in the\nlaboratory and in the night airglow, Atmos. Chem. Phys., 11, 9595–9603, https://doi.org/10.5194/acp-11-9595-2011, 2011. Feng, W., Marsh, D. R., Chipperfield, M. P., Janches, D., Höffner, J., Yi, F., and Plane, J. M. C.: A global atmospheric model of meteoric\n1110\niron, J. Geophys. Res. Atmos., 118, 9456–9474, https://doi.org/10.1002/jgrd.50708, 2013. Feng, W., Marsh, D. R., Chipperfield, M. P., Janches, D., Höffner, J., Yi, F., and Plane, J. M. C.: A global atmospheric model of meteoric\n1110\niron, J. Geophys. Res. Atmos., 118, 9456–9474, https://doi.org/10.1002/jgrd.50708, 2013. Fink, E. H. and Ramsay, D. A.: High-Resolution Study of the Ã2A’ →˜X2A” Transition of HO2: Analysis of the 000-000 Band, J. Mol. Feng, W., Marsh, D. R., Chipperfield, M. P., Janches, D., Höffner, J., Yi, F., and Plane, J. M. C.: A global atmospheric model of meteoric\n1110\niron, J. Geophys. Res. Atmos., 118, 9456–9474, https://doi.org/10.1002/jgrd.50708, 2013. Fink, E. H. and Ramsay, D. A.: High-Resolution Study of the Ã2A’ →˜X2A” Transition of HO2: Analysis of the 000-000 Band, J. Mol. Spectrosc., 185, 304–324, https://doi.org/10.1006/jmsp.1997.7401, 1997. Fontijn, A., Meyer, C. B., and Schiff, H. I.: Absolute Quantum Yield Measurements of the NO-O Reaction and Its Use as a Standard for iron, J. Geophys. Res. Atmos., 118, 9456–9474, https://doi.org/10.1002/jgrd.50708, 2013. Fink, E. H. and Ramsay, D. A.: High-Resolution Study of the Ã2A’ →˜X2A” Transition of HO2: Analysis of the 000-000 Band, J. Mol. Spectrosc., 185, 304–324, https://doi.org/10.1006/jmsp.1997.7401, 1997. Fink, E. H. and Ramsay, D. A.: High-Resolution Study of the Ã2A’ →˜X2A” Transition of HO2: Analysis of the 000-000 Band, J. Mol. Spectrosc., 185, 304–324, https://doi.org/10.1006/jmsp.1997.7401, 1997. Fontijn, A., Meyer, C. B., and Schiff, H. I.: Absolute Quantum Yield Measurements of the NO-O Reaction and Its Use as a Standard for\nChemiluminescent Reactions, J. Chem. Phys., 40, 64–70, https://doi.org/10.1063/1.1724895, 1964. 1115 Chemiluminescent Reactions, J. Chem. Phys., 40, 64–70, https://doi.org/10.1063/1.1724895, 1964. 1115\nFrisch, M. J., Trucks, G. W., Schlegel, H. B., Scuseria, G. E., Robb, M. A., Cheeseman, J. R., Scalmani, G., Barone, V., Petersson, G. A.,\nNakatsuji, H., Li, X., Caricato, M., Marenich, A. V., Bloino, J., Janesko, B. G., Gomperts, R., Mennucci, B., Hratchian, H. P., Ortiz, J. V.,\nIzmaylov, A. F., Sonnenberg, J. L., Williams-Young, D., Ding, F., Lipparini, F., Egidi, F., Goings, J., Peng, B., Petrone, A., Henderson,\nT., Ranasinghe, D., Zakrzewski, V. G., Gao, J., Rega, N., Zheng, G., Liang, W., Hada, M., Ehara, M., Toyota, K., Fukuda, R., Hasegawa, Frisch, M. J., Trucks, G. W., Schlegel, H. B., Scuseria, G. E., Robb, M. A., Cheeseman, J. R., Scalmani, G., Barone, V., Petersson, G. A.,\nNakatsuji, H., Li, X., Caricato, M., Marenich, A. V., Bloino, J., Janesko, B. G., Gomperts, R., Mennucci, B., Hratchian, H. P., Ortiz, J. V.,\nIzmaylov, A. F., Sonnenberg, J. L., Williams-Young, D., Ding, F., Lipparini, F., Egidi, F., Goings, J., Peng, B., Petrone, A., Henderson, T., Ranasinghe, D., Zakrzewski, V. G., Gao, J., Rega, N., Zheng, G., Liang, W., Hada, M., Ehara, M., Toyota, J., Ishida, M., Nakajima, T., Honda, Y., Kitao, O., Nakai, H., Vreven, T., Throssell, K., Montgomery, Jr., J. A., Peralta, J. E., Ogliaro, F.,\n1120\nBearpark, M. J., Heyd, J. J., Brothers, E. N., Kudin, K. N., Staroverov, V. N., Keith, T. A., Kobayashi, R., Normand, J., Raghavachari,\nK., Rendell, A. P., Burant, J. C., Iyengar, S. References W.: High-resolution terrestrial nightglow emission line\natlas from UVES/VLT: Positions, intensities, and identifications for 2808 lines at 314-1043 nm, J. Geophys. Res., 111, A12307,\n1085\nhttps://doi.org/10.1029/2006JA012023, 2006. Cosby, P. C., Sharpee, B. D., Slanger, T. G., Huestis, D. L., and Hanuschik, R. W.: High resolution terrestrial nightglow emission line\natlas from UVES/VLT: Positions, intensities, and identifications for 2808 lines at 314-1043 nm, J. Geophys. Res., 111, A12307,\n1085\nhttps://doi.org/10.1029/2006JA012023, 2006. Daly S M Feng W Mangan T P Gerding M and Plane J M C : The Meteoric Ni Layer in the Upper Atmosphere J Geophys Res atlas from UVES/VLT: Positions, intensities, and identifications for 2808 lines at 314-1043 nm, J. Geophys. Res., 111, A12307,\n1085\nhttps://doi.org/10.1029/2006JA012023, 2006. Daly, S. M., Feng, W., Mangan, T. P., Gerding, M., and Plane, J. M. C.: The Meteoric Ni Layer in the Upper Atmosphere, J. Geophys. Res. Space Phys 125 e28083 https://doi org/10 1029/2020JA028083 2020 Daly, S. M., Feng, W., Mangan, T. P., Gerding, M., and Plane, J. M. C.: The Meteoric Ni Layer in the Upper Atmosphere, J. Geophys. Res. Space Phys., 125, e28083, https://doi.org/10.1029/2020JA028083, 2020. 45 Gadsden, M. and Marovich, E.: The nightglow continuum, J. Atmos. Terr. Phys., 35, 1601–1614, https://doi.org/10.1016/0021-\n1125\n9169(73)90179-7, 1973. S., Tomasi, J., Cossi, M., Millam, J. M., Klene, M., Adamo, C., Cammi, R., Ochterski, J. W.,\nMartin, R. L., Morokuma, K., Farkas, O., Foresman, J. B., and Fox, D. J.: Gaussian 16 Revision C.01, Gaussian Inc. Wallingford CT,\n2016. J., Ishida, M., Nakajima, T., Honda, Y., Kitao, O., Nakai, H., Vreven, T., Throssell, K., Montgomery, Jr., J. A Bearpark, M. J., Heyd, J. J., Brothers, E. N., Kudin, K. N., Staroverov, V. N., Keith, T. A., Kobayashi, R., N K., Rendell, A. P., Burant, J. C., Iyengar, S. S., Tomasi, J., Cossi, M., Millam, J. M., Klene, M., Adamo, C., C Gadsden, M. and Marovich, E.: The nightglow continuum, J. Atmos. Terr. Phys., 35, 1601–1614, https://doi.org/10.1016/0021-\n1125\n9169(73)90179-7, 1973. 46 J.: The Whole Atmosphere Community Climate Model Version\n1145\n6 (WACCM6), J. Geophys. Res. Atmos., 124, 12,380–12,403, https://doi.org/10.1029/2019JD030943, 2019. Gordon, I. E., Rothman, L. S., Hargreaves, R. J., Hashemi, R., Karlovets, E. V., Skinner, F. M., Conway, E. K., Hill, C., Kochanov, R. V., 6 (WACCM6), J. Geophys. Res. Atmos., 124, 12,380–12,403, https://doi.org/10.1029/2019JD030943, 2019. Gordon, I. E., Rothman, L. S., Hargreaves, R. J., Hashemi, R., Karlovets, E. V., Skinner, F. M., Conway, E. K., Hill, C., Kochanov, R. V.,\nTan, Y., Wcisło, P., Finenko, A. A., Nelson, K., Bernath, P. F., Birk, M., Boudon, V., Campargue, A., Chance, K. V., Coustenis, A., Drouin,\nB J Flaud J M Gamache R R Hodges J T Jacquemart D Mlawer E J Nikitin A V Perevalov V I Rotger M Tennyson ordon, I. E., Rothman, L. S., Hargreaves, R. J., Hashemi, R., Karlovets, E. V., Skinner, F. M., Conway, E. K. Tan, Y., Wcisło, P., Finenko, A. A., Nelson, K., Bernath, P. F., Birk, M., Boudon, V., Campargue, A., Chance, K B. J., Flaud, J. M., Gamache, R. R., Hodges, J. T., Jacquemart, D., Mlawer, E. J., Nikitin, A. V., Perevalov, V B. J., Flaud, J. M., Gamache, R. R., Hodges, J. T., Jacquemart, D., Mlawer, E. J., Nikitin, A. V., Perevalov, V. I., Rotger, M., Tennyson, J., Toon, G. C., Tran, H., Tyuterev, V. G., Adkins, E. M., Baker, A., Barbe, A., Canè, E., Császár, A. G., Dudaryonok, A., Egorov, O.,\n1150\nFleisher, A. J., Fleurbaey, H., Foltynowicz, A., Furtenbacher, T., Harrison, J. J., Hartmann, J. M., Horneman, V. M., Huang, X., Karman,\nT., Karns, J., Kassi, S., Kleiner, I., Kofman, V., Kwabia-Tchana, F., Lavrentieva, N. N., Lee, T. J., Long, D. A., Lukashevskaya, A. A.,\nLyulin, O. M., Makhnev, V. Y., Matt, W., Massie, S. T., Melosso, M., Mikhailenko, S. N., Mondelain, D., Müller, H. S. P., Naumenko,\nO. V., Perrin, A., Polyansky, O. L., Raddaoui, E., Raston, P. L., Reed, Z. D., Rey, M., Richard, C., Tóbiás, R., Sadiek, I., Schwenke, D. W., Fleisher, A. J., Fleurbaey, H., Foltynowicz, A., Furtenbacher, T., Harrison, J. J., Hartmann, J. M., Horneman, Starikova, E., Sung, K., Tamassia, F., Tashkun, S. A., Vander Auwera, J., Vasilenko, I. A., Vigasin, A. A., Villanueva, G. L., Vispoel, B.,\n1155\nWagner, G., Yachmenev, A., and Yurchenko, S. N.: The HITRAN2020 molecular spectroscopic database, J. Quant. Spectrosc. Radiat. Transf., 277, 107949, https://doi.org/10.1016/j.jqsrt.2021.107949, 2022. https://doi.org/10.5194/egusphere-2023-2087\nPreprint. Discussion started: 28 September 2023\nc⃝Author(s) 2023. CC BY 4.0 License. https://doi.org/10.5194/egusphere-2023-2087\nPreprint. Discussion started: 28 September 2023\nc⃝Author(s) 2023. CC BY 4.0 License. Gardner, C. S., Plane, J. M. C., Pan, W., Vondrak, T., Murray, B. J., and Chu, X.: Seasonal variations of the Na and Fe layers at the South\nPole and their implications for the chemistry and general circulation of the polar mesosphere, J. Geophys. Res. Atmos., 110, D10302,\nhttps://doi.org/10.1029/2004JD005670, 2005. Gattinger, R. L., Evans, W. F. J., McDade, I. C., Degenstein, D. A., and Llewellyn, E. J.: Observation of the chemiluminescent NO + O →NO2\n+ hν reaction in the upper mesospheric dark polar regions by OSIRIS on Odin, Can. J. Phys., 87, 925–932, https://doi.org/10.1139/P09-\n051, 2009. Gattinger, R. L., Evans, W. F. J., McDade, I. C., Degenstein, D. A., and Llewellyn, E. J.: Observation of the chemiluminescent NO + O →NO2\n1130\n+ hν reaction in the upper mesospheric dark polar regions by OSIRIS on Odin, Can. J. Phys., 87, 925–932, https://doi.org/10.1139/P09-\n051, 2009. Gattinger, R. L., McDade, I. C., Alfaro Suzán, A. L., Boone, C. D., Walker, K. A., Bernath, P. F., Evans, W. F. J., Degenstein, D. A., Yee, J. H.,\nSheese, P., and Llewellyn, E. J.: NO2 air afterglow and O and NO densities from Odin-OSIRIS night and ACE-FTS sunset observations in the Antarctic MLT region, Journal of Geophysical Research (Atmospheres), 115, D12301, https://doi.org/10.1029/2009JD013205, 2010. 1135\nGattinger, R. L., Evans, W. F. J., Degenstein, D. A., and Llewellyn, E. J.: A spectral model of the FeO orange bands with a com-\nparison between a laboratory spectrum and a night airglow spectrum observed by OSIRIS on Odin, Can. J. Phys., 89, 239–248,\nhttps://doi.org/10.1139/P11-003, 2011a. Gattinger, R. L., Evans, W. F. J., and Llewellyn, E. J.: Chemiluminescent NiO* emissions: band systems and spectral simulation, Can. J. Phys., 89, 869–874, https://doi.org/10.1139/p11-068, 2011b. 1140 Gattinger, R. L., Evans, W. F. J., and Llewellyn, E. J.: Chemiluminescent NiO* emissions: band systems and spectral simulation, Can. J. Phys., 89, 869–874, https://doi.org/10.1139/p11-068, 2011b. 1140\nGeorgievskii, Y. and Klippenstein, S. J.: Long-range transition state theory, J. Chem. Phys., 122, 194 103, https://doi.org/10.1063/1.1899603,\n2005. Gettelman, A., Mills, M. J., Kinnison, D. E., Garcia, R. R., Smith, A. K., Marsh, D. R., Tilmes, S., Vitt, F., Bardeen, C. G., McInerny, J., Liu, y ,\n,\n,\np\ng\np\n,\nGeorgievskii, Y. and Klippenstein, S. J.: Long-range transition state theory, J. Chem. Phys., 122, 194 103, https://doi.org/10.1063/1.1899603,\n2005. Gettelman, A., Mills, M. J., Kinnison, D. E., Garcia, R. R., Smith, A. K., Marsh, D. R., Tilmes, S., Vitt, F., Bardeen, C. G., McInerny, J., Liu,\nH L Solomon S C Polvani L M Emmons L K Lamarque J F Richter J H Glanville A S Bacmeister J T Phillips A S Georgievskii, Y. and Klippenstein, S. J.: Long-range transition state theory, J. Chem. Phys., 122, 194 103, https://doi.org/10.1063/1.1899603,\n2005. 2005. Gettelman, A., Mills, M. J., Kinnison, D. E., Garcia, R. R., Smith, A. K., Marsh, D. R., Tilmes, S., Vitt, F., Bardeen, C. G., McInerny, J., Liu,\nH. L., Solomon, S. C., Polvani, L. M., Emmons, L. K., Lamarque, J. F., Richter, J. H., Glanville, A. S., Bacmeister, J. T., Phillips, A. S., Gettelman, A., Mills, M. J., Kinnison, D. E., Garcia, R. R., Smith, A. K., Marsh, D. R., Tilmes, S., Vitt, F., Bardeen, C. G., McInerny, J., Liu,\nH. L., Solomon, S. C., Polvani, L. M., Emmons, L. K., Lamarque, J. F., Richter, J. H., Glanville, A. S., Bacmeister, J. T., Phillips, A. S., H. L., Solomon, S. C., Polvani, L. M., Emmons, L. K., Lamarque, J. F., Richter, J. H., Glanville, A. S H. L., Solomon, S. C., Polvani, L. M., Emmons, L. K., Lamarque, J. F., Richter, J. H., Glanville, A. S., Bacmeister, J. T., Phillips, A. S., Neale, R. B., Simpson, I. R., DuVivier, A. K., Hodzic, A., and Randel, W. J.: The Whole Atmosphere Community Climate Model Version\n1145\n6 (WACCM6), J. Geophys. Res. Atmos., 124, 12,380–12,403, https://doi.org/10.1029/2019JD030943, 2019. Neale, R. B., Simpson, I. R., DuVivier, A. K., Hodzic, A., and Randel, W. J.: The Whole Atmosphere Community Climate Model Version\n1145\n6 (WACCM6), J. Geophys. Res. Atmos., 124, 12,380–12,403, https://doi.org/10.1029/2019JD030943, 2019. Gordon, I. E., Rothman, L. S., Hargreaves, R. J., Hashemi, R., Karlovets, E. V., Skinner, F. M., Conway, E. K., Hill, C., Kochanov, R. V.,\nTan, Y., Wcisło, P., Finenko, A. A., Nelson, K., Bernath, P. F., Birk, M., Boudon, V., Campargue, A., Chance, K. V., Coustenis, A., Drouin,\nB. J., Flaud, J. M., Gamache, R. R., Hodges, J. T., Jacquemart, D., Mlawer, E. J., Nikitin, A. V., Perevalov, V. I., Rotger, M., Tennyson, Neale, R. B., Simpson, I. R., DuVivier, A. K., Hodzic, A., and Randel, W. Starikova, E., Sung, K., Tamassia, F., Tashkun, S. A., Vander Auwera, J., Vasilenko, I. A., Vigasin, A. A., Villanueva, G. L., Vispoel, B.,\n1155\nWagner, G., Yachmenev, A., and Yurchenko, S. N.: The HITRAN2020 molecular spectroscopic database, J. Quant. Spectrosc. Radiat. Transf., 277, 107949, https://doi.org/10.1016/j.jqsrt.2021.107949, 2022. Gu, S.-Y., Dou, X.-K., Yang, C.-Y., Jia, M., Huang, K.-M., Huang, C.-M., and Zhang, S.-D.: Climatology and Anomaly of the\nQuasi-Two-Day Wave Behaviors During 2003-2018 Austral Summer Periods, J. Geophys. Res. Space Phys.), 124, 544–556, Wagner, G., Yachmenev, A., and Yurchenko, S. N.: The HITRAN2020 molecular spectroscopic database, J. Quant. Spectrosc. Radiat. Transf., 277, 107949, https://doi.org/10.1016/j.jqsrt.2021.107949, 2022. Gu, S.-Y., Dou, X.-K., Yang, C.-Y., Jia, M., Huang, K.-M., Huang, C.-M., and Zhang, S.-D.: Climatology and Anomaly of the\nQuasi-Two-Day Wave Behaviors During 2003-2018 Austral Summer Periods, J. Geophys. Res. Space Phys.), 124, 544–556,\nhttps://doi.org/10.1029/2018JA026047, 2019. 1160 Helmer, M. and Plane, J. M. C.: Kinetic study of the reaction between Fe and O3 under mesospheric conditions, J. Chem. Soc. Faraday\nTrans., 90, 31–37, https://doi.org/10.1039/FT9949000031, 1994. Holstein, K. J., Fink, E. H., and Zabel, F.: The ν3 vibration of electronically excited HO2(A2A′), J. Mol. Spectrosc., 99, 231–234, Helmer, M. and Plane, J. M. C.: Kinetic study of the reaction between Fe and O3 under mesospheric conditions, J. Chem. Soc. Faraday\nTrans., 90, 31–37, https://doi.org/10.1039/FT9949000031, 1994. ,\n,\ny\n3\np\n,\ny\nTrans., 90, 31–37, https://doi.org/10.1039/FT9949000031, 1994. Holstein, K. J., Fink, E. H., and Zabel, F.: The ν3 vibration of electronically excited HO2(A2A′), J. Mol. Spectrosc., 99, 231–234,\nhttps://doi.org/10.1016/0022-2852(83)90307-7, 1983. Holstein, K. J., Fink, E. H., and Zabel, F.: The ν3 vibration of electronically excited HO2(A2A′), J. Mol. Spectrosc., 99, 231–234,\nhttps://doi.org/10.1016/0022-2852(83)90307-7, 1983. 47 https://doi.org/10.5194/egusphere-2023-2087\nPreprint. Discussion started: 28 September 2023\nc⃝Author(s) 2023. CC BY 4.0 License. https://doi.org/10.5194/egusphere-2023-2087\nPreprint. Discussion started: 28 September 2023\nc⃝Author(s) 2023. CC BY 4.0 License. Howard, C. J. and Finlayson-Pitts, B. J.: Yields of HO2 in the reaction of hydrogen atoms with ozone, J. Chem. Phys., 72, 3842–3843,\n1165\nhttps://doi.org/10.1063/1.439601, 1980. Howard, C. J. and Finlayson-Pitts, B. J.: Yields of HO2 in the reaction of hydrogen atoms with ozone, J. Chem. Phys., 72, 3842–3843,\n1165\nhttps://doi.org/10.1063/1.439601, 1980. Hunziker,\nH. E. and\nWendt,\nH. R.:\nNear\ninfrared\nabsorption\nspectrum\nof\nHO2,\nJ. Chem. Phys.,\n60,\n4622–4623,\nhttps://doi.org/10.1063/1.1680949, 1974. Jenniskens, P., Lacey, M., Allan, B. J., Self, D. E., and Plane, J. M. C.: FeO “Orange Arc” Emission Detected in Optical Spectrum of Leonid Hunziker,\nH. E. and\nWendt,\nH. R.:\nNear\ninfrared\nabsorption\nspectrum\nof\nHO2,\nJ. Chem. Phys.,\n60,\n4622–4623,\nhttps://doi.org/10.1063/1.1680949, 1974. https://doi.org/10.1063/1.1680949, 1974. Jenniskens, P., Lacey, M., Allan, B. J., Self, D. E., and Plane, J. M. C.: FeO “Orange Arc” Emission Detected in Optical Spectrum of Leonid\nP\ni\nT i\nE\nh M\nPl\n82 429 438 h\n//d i\n/10 1023/A 1017079725808 2000\n1170 Jenniskens, P., Lacey, M., Allan, B. J., Self, D. E., and Plane, J. M. C.: FeO “Orange Arc” Emission Detected in Optical Spectrum of Leonid\nPersistent Train, Earth Moon Planets, 82, 429–438, https://doi.org/10.1023/A:1017079725808, 2000. 170 Persistent Train, Earth Moon Planets, 82, 429–438, https://doi.org/10.1023/A:1017079725808, 2000. 1170 Persistent Train, Earth Moon Planets, 82, 429–438, https://doi.org/10.1023/A:1017079725808, 2000. 1170\nJones, A., Noll, S., Kausch, W., Szyszka, C., and Kimeswenger, S.: An advanced scattered moonlight model for Cerro Paranal, Astron. Astrophys., 560, A91, https://doi.org/10.1051/0004-6361/201322433, 2013. Kalogerakis, K. S.: A previously unrecognized source of the O2 Atmospheric band emission in Earth’s nightglow, Sci. Adv., 5, eaau9255, Persistent Train, Earth Moon Planets, 82, 429–438, https://doi.org/10.1023/A:1017079725808, 2000. 70 Persistent Train, Earth Moon Planets, 82, 429–438, https://doi.org/10.1023/A:1017079725808, 2000. 1170\nJones, A., Noll, S., Kausch, W., Szyszka, C., and Kimeswenger, S.: An advanced scattered moonlight model for Cerro Paranal, Astron. Astrophys., 560, A91, https://doi.org/10.1051/0004-6361/201322433, 2013. Kalogerakis, K. S.: A previously unrecognized source of the O2 Atmospheric band emission in Earth’s nightglow, Sci. Adv., 5, eaau9255,\nhttps://doi.org/10.1126/sciadv.aau9255, 2019. Jones, A., Noll, S., Kausch, W., Szyszka, C., and Kimeswenger, S.: An advanced scattered moonlight model for Cerro Paranal, Astron. Astrophys., 560, A91, https://doi.org/10.1051/0004-6361/201322433, 2013. Kalogerakis, K. S.: A previously unrecognized source of the O2 Atmospheric band emission in Earth’s nightglow, Sci. 84463N,\n1180\nhttps://doi.org/10.1117/12.924340, 2012. Krassovsky, V. I.: The effect of water vapor and oxides of carbon and nitrogen on night sky luminosity, Dokl. Akad. Nauk. SSSR, 78,\n669–672, 1951. Kenner, R. D. and Ogryzlo, E. A.: Orange chemiluminescence from NO2, J. Chem. Phys., 80, 1–6, https://doi.org/10.1063/1.446479, 1984. den Ancker, M. E., Cure, M., and Naylor, D. A.: A water vapour monitor at Paranal Observatory, in: G https://doi.org/10.1117/12.924340, 2012. Krassovsky, V. I.: The effect of water vapor and oxides of carbon and nitrogen on night sky luminosity, Dokl. Akad. Nauk. SSSR, 78,\n669–672, 1951. Krassovsky, V. I.: The effect of water vapor and oxides of carbon and nitrogen on night sky luminosity, Dokl. Akad. Nauk. SSSR, 78,\n669–672, 1951. Kreyling, D., Sagawa, H., Wohltmann, I., Lehmann, R., and Kasai, Y.: SMILES zonal and diurnal variation climatology of stratospheric\nand mesospheric trace gasses: O3, HCl, HNO3, ClO, BrO, HOCl, HO2, and temperature, J. Geophys. Res. Atmos.), 118, 11,888–11,903,\n1185\nhttps://doi.org/10.1002/2012JD019420, 2013. Lee, D. D. and Seung, H. S.: Learning the parts of objects by non-negative matrix factorization, Nature, 401, 788–791,\nhttps://doi.org/10.1038/44565, 1999. Leinert, C., Bowyer, S., Haikala, L. K., Hanner, M. S., Hauser, M. G., Levasseur-Regourd, A. C., Mann Leinert, C., Bowyer, S., Haikala, L. K., Hanner, M. S., Hauser, M. G., Levasseur-Regourd, A. C., Mann, I., Mattila, K., Reach, W. T., Leinert, C., Bowyer, S., Haikala, L. K., Hanner, M. S., Hauser, M. G., Levasseur-Regourd, A. C., Mann, I., Mattila, K., Reach, W. T.,\nSchlosser, W., Staude, H. J., Toller, G. N., Weiland, J. L., Weinberg, J. L., and Witt, A. N.: The 1997 reference of diffuse night sky\n1190\nbrightness, Astron. Astrophys. Sup., 127, 1–99, https://doi.org/10.1051/aas:1998105, 1998. Schlosser, W., Staude, H. J., Toller, G. N., Weiland, J. L., Weinberg, J. L., and Witt, A. N.: The 1997 reference of diffuse night sky\n1190\nbrightness, Astron. Astrophys. Sup., 127, 1–99, https://doi.org/10.1051/aas:1998105, 1998. Schlosser, W., Staude, H. J., Toller, G. N., Weiland, J. L., Weinberg, J. L., and Witt, A. N.: The 1997 reference of diffuse night sky\n1190\nbrightness, Astron. Astrophys. Sup., 127, 1–99, https://doi.org/10.1051/aas:1998105, 1998. Maihara, T., Iwamuro, F., Yamashita, T., Hall, D. N. B., Cowie, L. L., Tokunaga, A. T., and Pickles, A.: Observations of the OH Airglow\nEmission, Publ. Astron. Soc. Pac., 105, 940, https://doi.org/10.1086/133259, 1993. Makhlouf, U. B., Picard, R. H., and Winick, J. Adv., 5, eaau9255, Jones, A., Noll, S., Kausch, W., Szyszka, C., and Kimeswenger, S.: An advanced scattered moonlight model for Cerro Paranal, Astron. Astrophys., 560, A91, https://doi.org/10.1051/0004-6361/201322433, 2013. Kalogerakis, K. S.: A previously unrecognized source of the O2 Atmospheric band emission in Earth’s nightglow, Sci. Adv., 5, eaau9255,\nhttps://doi.org/10.1126/sciadv.aau9255, 2019. Kane, T. J. and Gardner, C. S.: Lidar Observations of the Meteoric Deposition of Mesospheric Metals, Science, 259, 1297–1300,\n1175\nhttps://doi.org/10.1126/science.259.5099.1297, 1993. Kane, T. J. and Gardner, C. S.: Lidar Observations of the Meteoric Deposition of Mesospheric Metals, Science, 259, 1297–1300,\n1175\nhttps://doi.org/10.1126/science.259.5099.1297, 1993. Kenner, R. D. and Ogryzlo, E. A.: Orange chemiluminescence from NO2, J. Chem. Phys., 80, 1–6, https://doi.org/10.1063/1.446479, 1984. Kerber, F., Rose, T., Chacón, A., Cuevas, O., Czekala, H., Hanuschik, R., Momany, Y., Navarrete, J., Querel, R. R., Smette, A., van\nden Ancker, M. E., Cure, M., and Naylor, D. A.: A water vapour monitor at Paranal Observatory, in: Ground-based and Airborne In-\nstrumentation for Astronomy IV, edited by McLean, I. S., Ramsay, S. K., and Takami, H., vol. 8446 of SPIE Proc. Ser., p. 84463N,\n1180\nhttps://doi.org/10.1117/12.924340, 2012. Krassovsky, V. I.: The effect of water vapor and oxides of carbon and nitrogen on night sky luminosity, Dokl. Akad. Nauk. SSSR, 78,\n669–672, 1951. Kreyling, D., Sagawa, H., Wohltmann, I., Lehmann, R., and Kasai, Y.: SMILES zonal and diurnal variation climatology of stratospheric\nand mesospheric trace gasses: O3, HCl, HNO3, ClO, BrO, HOCl, HO2, and temperature, J. Geophys. Res. Atmos.), 118, 11,888–11,903,\n1185\nhttps://doi.org/10.1002/2012JD019420, 2013. Lee, D. D. and Seung, H. S.: Learning the parts of objects by non-negative matrix factorization, Nature, 401, 788–791,\nhttps://doi.org/10.1038/44565, 1999. Leinert, C., Bowyer, S., Haikala, L. K., Hanner, M. S., Hauser, M. G., Levasseur-Regourd, A. C., Mann, I., Mattila, K., Reach, W. T., Kane, T. J. and Gardner, C. S.: Lidar Observations of the Meteoric Deposition of Mesospheric Metals, Science, 259, 1297–1300,\n1175\nhttps://doi.org/10.1126/science.259.5099.1297, 1993. Kenner, R. D. and Ogryzlo, E. A.: Orange chemiluminescence from NO2, J. Chem. Phys., 80, 1–6, https://doi.org/10.1063/1.446479, 1984. Kerber, F., Rose, T., Chacón, A., Cuevas, O., Czekala, H., Hanuschik, R., Momany, Y., Navarrete, J., Querel, R. R., Smette, A., van\nden Ancker, M. E., Cure, M., and Naylor, D. A.: A water vapour monitor at Paranal Observatory, in: Ground-based and Airborne In-\nstrumentation for Astronomy IV, edited by McLean, I. S., Ramsay, S. K., and Takami, H., vol. 8446 of SPIE Proc. Ser., p. Molod, A., Takacs, L., Suarez, M., and Bacmeister, J.: Development of the GEOS-5 atmospheric general circulation model: evolution from\n1215\nMERRA to MERRA2, Geosci. Model Dev., 8, 1339–1356, https://doi.org/10.5194/gmd-8-1339-2015, 2015. Molod, A., Takacs, L., Suarez, M., and Bacmeister, J.: Development of the GEOS-5 atmospheric general circulation model: evolution from\n1215\nMERRA to MERRA2, Geosci. Model Dev., 8, 1339–1356, https://doi.org/10.5194/gmd-8-1339-2015, 2015. Nelder, J. A. and Mead, R.: A simplex method for function minimization, Comput. J., 7, 308–313, https://doi.org/10.1093/comjnl/7.4.308, Molod, A., Takacs, L., Suarez, M., and Bacmeister, J.: Development of the GEOS-5 atmospheric general circulation model: evolution from\n1215\nMERRA to MERRA2, Geosci. Model Dev., 8, 1339–1356, https://doi.org/10.5194/gmd-8-1339-2015, 2015. Nelder, J. A. and Mead, R.: A simplex method for function minimization, Comput. J., 7, 308–313, https://doi.org/10.1093/comjnl/7.4.308,\n1965. N ll S K\nh W B d\nM J\nA M S\nk\nC Ki\nS\nd Vi h\nJ\nA\nh i\ndi i\nd l f\nC MERRA to MERRA2, Geosci. Model Dev., 8, 1339 1356, https://doi.org/10.5194/gmd 8 1339 2015, 2015. Nelder, J. A. and Mead, R.: A simplex method for function minimization, Comput. J., 7, 308–313, https://doi.org/10.1093/comjnl/7.4.308,\n1965. Noll, S., Kausch, W., Barden, M., Jones, A. M., Szyszka, C., Kimeswenger, S., and Vinther, J.: An atmospheric radiation model for Cerro\nParanal. I. The optical spectral range, Astron. Astrophys., 543, A92, https://doi.org/10.1051/0004-6361/201219040, 2012. 1220 Noll, S., Kausch, W., Barden, M., Jones, A. M., Szyszka, C., Kimeswenger, S., and Vinther, J.: An atmospheric radiation model for Cerro Paranal. I. The optical spectral range, Astron. Astrophys., 543, A92, https://doi.org/10.1051/0004-6361/201219040, 2012. 1220\nNoll, S., Kausch, W., Kimeswenger, S., Barden, M., Jones, A. M., Modigliani, A., Szyszka, C., and Taylor, J.: Skycorr: A general tool for\nspectroscopic sky subtraction, Astron. Astrophys., 567, A25, https://doi.org/10.1051/0004-6361/201423908, 2014. Noll, S., Kausch, W., Kimeswenger, S., Unterguggenberger, S., and Jones, A. M.: Comparison of VLT/X-shooter OH and O2 rota-\ntional temperatures with consideration of TIMED/SABER emission and temperature profiles, Atmos. Chem. Phys., 16, 5021–5042, Noll, S., Kausch, W., Kimeswenger, S., Barden, M., Jones, A. M., Modigliani, A., Szyszka, C., and Taylor, J.: Skycorr: A general tool for\nspectroscopic sky subtraction, Astron. Astrophys., 567, A25, https://doi.org/10.1051/0004-6361/201423908, 2014. Noll, S., Kausch, W., Kimeswenger, S., Unterguggenberger, S., and Jones, A. M.: Comparison of VLT/X-shooter OH and O2 rota-\ntional temperatures with consideration of TIMED/SABER emission and temperature profiles, Atmos. Chem. Phys., 16, 5021–5042,\nhttps://doi.org/10.5194/acp-16-5021-2016, 2016. 1225 https://doi.org/10.5194/acp-16-5021-2016, 2016. R.: Photochemical-dynamical modeling of the measured response of airglow to gravity waves Schlosser, W., Staude, H. J., Toller, G. N., Weiland, J. L., Weinberg, J. L., and Witt, A. N.: The 1997 reference of diffuse night sky\n1190\nbrightness, Astron. Astrophys. Sup., 127, 1–99, https://doi.org/10.1051/aas:1998105, 1998. Maihara, T., Iwamuro, F., Yamashita, T., Hall, D. N. B., Cowie, L. L., Tokunaga, A. T., and Pickles, A.: Observations of the OH Airglow brightness, Astron. Astrophys. Sup., 127, 1–99, https://doi.org/10.1051/aas:1998105, 1998. Maihara, T., Iwamuro, F., Yamashita, T., Hall, D. N. B., Cowie, L. L., Tokunaga, A. T., and Pickles, A.: Observations of the OH Airglow\nEmission, Publ. Astron. Soc. Pac., 105, 940, https://doi.org/10.1086/133259, 1993. Makhlouf, U. B., Picard, R. H., and Winick, J. R.: Photochemical-dynamical modeling of the measured response of airglow to gravity waves\n1 B\ni\nd l f\nOH i\nl\nJ G\nh\nR\n100 11 289 11 312 htt\n//d i\n/10 1029/94JD03327 1995\n5 Makhlouf, U. B., Picard, R. H., and Winick, J. R.: Photochemical-dynamical modeling of the measured response of airglow to gravity waves\n1. Basic model for OH airglow, J. Geophys. Res., 100, 11 289–11 312, https://doi.org/10.1029/94JD03327, 1995. 1195 Makhlouf, U. B., Picard, R. H., and Winick, J. R.: Photochemical-dynamical modeling of the measured respo 1. Basic model for OH airglow, J. Geophys. Res., 100, 11 289–11 312, https://doi.org/10.1029/94JD03327, 1995. 1195\nMarsh, D. R., Smith, A. K., Mlynczak, M. G., and Russell, III, J. M.: SABER observations of the OH Meinel airglow variability near the\nmesopause, J. Geophys. Res., 111, A10S05, https://doi.org/10.1029/2005JA011451, 2006. McDade, I. C., Llewellyn, E. J., Greer, R. G. H., and Murtagh, D. P.: ETON 3: Altitude profiles of the nightglow continuum at green and\nnear infrared wavelengths, Planet. Space. Sci., 34, 801–810, https://doi.org/10.1016/0032-0633(86)90076-0, 1986. 1. Basic model for OH airglow, J. Geophys. Res., 100, 11 289–11 312, https://doi.org/10.1029/94JD03327, 19 Marsh, D. R., Smith, A. K., Mlynczak, M. G., and Russell, III, J. M.: SABER observations of the OH Meinel airglow variability near the\nmesopause, J. Geophys. Res., 111, A10S05, https://doi.org/10.1029/2005JA011451, 2006. McDade, I. C., Llewellyn, E. J., Greer, R. G. H., and Murtagh, D. P.: ETON 3: Altitude profiles of the nightglow continuum at green and\nnear infrared wavelengths, Planet. Space. Sci., 34, 801–810, https://doi.org/10.1016/0032-0633(86)90076-0, 1986. Merer,\nA. J.:\nSpectroscopy\nof\nthe\nDiatomic\n3d\nTransition\nMetal\nOxides,\nAnn. Rev. Phys. Chem.,\n40,\n407–438,\n1200\nhttps://doi.org/10.1146/annurev.pc.40.100189.002203, 1989. 48 https://doi.org/10.5194/egusphere-2023-2087\nPreprint. Discussion started: 28 September 2023\nc⃝Author(s) 2023. CC BY 4.0 License. https://doi.org/10.5194/egusphere-2023-2087\nPreprint. Discussion started: 28 September 2023\nc⃝Author(s) 2023. CC BY 4.0 License. Millán, L., Wang, S., Livesey, N., Kinnison, D., Sagawa, H., and Kasai, Y.: Stratospheric and mesospheric HO2 observations from the Aura\nMicrowave Limb Sounder, Atmos. Chem. Phys., 15, 2889–2902, https://doi.org/10.5194/acp-15-2889-2015, 2015. Millán, L., Wang, S., Livesey, N., Kinnison, D., Sagawa, H., and Kasai, Y.: Stratospheric and mesospheric HO2 observations from the Aura\nMicrowave Limb Sounder, Atmos. Chem. Phys., 15, 2889–2902, https://doi.org/10.5194/acp-15-2889-2015, 2015. Mlynczak, M. G., Hunt, L. A., Marshall, B. T., Mertens, C. J., Marsh, D. R., Smith, A. K., Russell, J. M., Siskind, D. E., and Gordley, L. L.:\nAtomic hydrogen in the mesopause region derived from SABER: Algorithm theoretical basis, measurement uncertainty, and results, J. 1205\nGeophys. Res. Atmos., 119, 3516–3526, https://doi.org/10.1002/2013JD021263, 2014. Mlynczak, M. G., Hunt, L. A., Russell, J. M., and Marshall, B. T.: Updated SABER Night Atomic Oxygen and Implications for SABER\nOzone and Atomic Hydrogen, Geophys. Res. Lett., 45, 5735–5741, https://doi.org/10.1029/2018GL077377, 2018. Modigliani, A., Goldoni, P., Royer, F., Haigron, R., Guglielmi, L., François, P., Horrobin, M., Bristow, P., Vernet, J., Moehler, S., Kerber, F., Mlynczak, M. G., Hunt, L. A., Russell, J. M., and Marshall, B. T.: Updated SABER Night Atomic Oxygen and Implications for SABER\nOzone and Atomic Hydrogen, Geophys. Res. Lett., 45, 5735–5741, https://doi.org/10.1029/2018GL077377, 2018. Ballester, P., Mason, E., and Christensen, L.: The X-shooter pipeline, in: Observatory Operations: Strategies, Processes, and Systems III,\n1210\nedited by Silva, D. R., Peck, A. B., and Soifer, B. T., vol. 7737 of SPIE Proc. Ser., p. 773728, https://doi.org/10.1117/12.857211, 2010. Moehler, S., Modigliani, A., Freudling, W., Giammichele, N., Gianninas, A., Gonneau, A., Kausch, W., Lançon, A., Noll, S., Rauch, T.,\nand Vinther, J.: Flux calibration of medium-resolution spectra from 300 nm to 2500 nm: Model reference spectra and telluric correction,\nAstron. Astrophys., 568, A9, https://doi.org/10.1051/0004-6361/201423790, 2014. edited by Silva, D. R., Peck, A. B., and Soifer, B. T., vol. 7737 of SPIE Proc. Ser., p. 773728, https://doi.org/10.1117/12.857211, 2010. Moehler, S., Modigliani, A., Freudling, W., Giammichele, N., Gianninas, A., Gonneau, A., Kausch, W., Lançon, A., Noll, S., Rauch, T.,\nand Vinther, J.: Flux calibration of medium-resolution spectra from 300 nm to 2500 nm: Model reference spectra and telluric correction,\nAstron. Astrophys., 568, A9, https://doi.org/10.1051/0004-6361/201423790, 2014. https://doi.org/10.5194/egusphere-2023-2087\nPreprint. Discussion started: 28 September 2023\nc⃝Author(s) 2023. CC BY 4.0 License. https://doi.org/10.5194/egusphere-2023-2087\nPreprint. Discussion started: 28 September 2023\nc⃝Author(s) 2023. CC BY 4.0 License. Noll, S., Schmidt, C., Kausch, W., Bittner, M., and Kimeswenger, S.: Data for the paper \"Climatologies of Various OH Lines From About\n40\n90,000 X-shooter Spectra\" [Dataset], https://doi.org/10.5281/zenodo.7826060, 2023c. Noll, S., Schmidt, C., Kausch, W., Bittner, M., and Kimeswenger, S.: Data for the paper \"Climatologies of Various OH Lines From About\n1240\n90,000 X-shooter Spectra\" [Dataset], https://doi.org/10.5281/zenodo.7826060, 2023c. Noxon, J. F.: The near infrared nightglow continuum, Planet. Space Sci., 26, 191–192, https://doi.org/10.1016/0032-0633(78)90019-3, 1978. Oliva, E., Origlia, L., Scuderi, S., Benatti, S., Carleo, I., Lapenna, E., Mucciarelli, A., Baffa, C., Biliotti, V., Carbonaro, L., Falcini, G., Giani,\nE., Iuzzolino, M., Massi, F., Sanna, N., Sozzi, M., Tozzi, A., Ghedina, A., Ghinassi, F., Lodi, M., Harutyunyan, A., and Pedani, M.: Lines\nand continuum sky emission in the near infrared: observational constraints from deep high spectral resolution spectra with GIANO-TNG,\n1245\nAstron. Astrophys., 581, A47, https://doi.org/10.1051/0004-6361/201526291, 2015. Panka, P. A., Kutepov, A. A., Zhu, Y., Kaufmann, M., Kalogerakis, K. S., Rezac, L., Feofilov, A. G., Marsh, D. R., and Janches, D.:\nSimultaneous Retrievals of Nighttime O(3P) and Total OH Densities From Satellite Observations of Meinel Band Emissions, Geophys. Res. Lett., 48, e91053, https://doi.org/10.1029/2020GL091053, 2021. Panka, P. A., Kutepov, A. A., Zhu, Y., Kaufmann, M., Kalogerakis, K. S., Rezac, L., Feofilov, A. G., Marsh, D. R., and Janches, D.:\nSimultaneous Retrievals of Nighttime O(3P) and Total OH Densities From Satellite Observations of Meinel Band Emissions, Geophys. Res. Lett., 48, e91053, https://doi.org/10.1029/2020GL091053, 2021. Pickett, H. M., Drouin, B. J., Canty, T., Salawitch, R. J., Fuller, R. A., Perun, V. S., Livesey, N. J., Waters, J. W., Stachnik, R. A., Sander,\n1250\nS. P., Traub, W. A., Jucks, K. W., and Minschwaner, K.: Validation of Aura Microwave Limb Sounder OH and HO2 measurements, J. Geophys. Res., 113, D16S30, https://doi.org/10.1029/2007JD008775, 2008. Pickett, H. M., Drouin, B. J., Canty, T., Salawitch, R. J., Fuller, R. A., Perun, V. S., Livesey, N. J., Waters, J. W., Stachnik, R. A., Sander,\n1250\nS. P., Traub, W. A., Jucks, K. W., and Minschwaner, K.: Validation of Aura Microwave Limb Sounder OH and HO2 measurements, J. Geophys. Res., 113, D16S30, https://doi.org/10.1029/2007JD008775, 2008. Plane, J. M. C.: Atmospheric Chemistry of Meteoric Metals, Chem. Rev., 103, 4963–4984, https://doi.org/10.1021/cr0205309, 2003. Plane, J. M. C., Feng, W., and Dawkins, E. Sandor, B. J. and Clancy, R. T.: Mesospheric HOx chemistry from diurnal microwave observations of HO2, O3, and H2O, J. Geophys. Res.,\n103, 13,337–13,351, https://doi.org/10.1029/98JD00432, 1998. Saran, D. V., Slanger, T. G., Feng, W., and Plane, J. M. C.: FeO emission in the mesosphere: Detectability, diurnal behavior, and modeling,\n1265\nJ. Geophys. Res. Atmos., 116, D12303, https://doi.org/10.1029/2011JD015662, 2011. Saran, D. V., Slanger, T. G., Feng, W., and Plane, J. M. C.: FeO emission in the mesosphere: Detectability, diurnal behavior, and modeling,\n1265\nJ. Geophys. Res. Atmos., 116, D12303, https://doi.org/10.1029/2011JD015662, 2011. Semenov, A. I., Shefov, N. N., and Medvedeva, I. V.: Empirical model of variations in the continuum emission in the upper atmosphere. 1. I t\nit\nG\nA\n54 488 499 htt\n//d i\n/10 1134/S0016793214040148 2014 Saran, D. V., Slanger, T. G., Feng, W., and Plane, J. M. C.: FeO emission in the mesosphere: Detectability, diurnal behavior, and modeling,\n1265\nJ. Geophys. Res. Atmos., 116, D12303, https://doi.org/10.1029/2011JD015662, 2011. Semenov, A. I., Shefov, N. N., and Medvedeva, I. V.: Empirical model of variations in the continuum emission in the upper atmosphere. 1. Intensity, Geomagn. Aeron., 54, 488–499, https://doi.org/10.1134/S0016793214040148, 2014a. Semenov, A. I., Shefov, N. N., and Medvedeva, I. V.: Empirical model for variation of the continuum emission in the upper atmosphere. 2. Semenov, A. I., Shefov, N. N., and Medvedeva, I. V.: Empirical model of variations in the continuum emission in the upper atmosphere. 1. Intensity, Geomagn. Aeron., 54, 488–499, https://doi.org/10.1134/S0016793214040148, 2014a. Semenov, A. I., Shefov, N. N., and Medvedeva, I. V.: Empirical model for variation of the continuum emission in the upper atmosphere. 2. Infrared components, Geomagn. Aeron., 54, 655–665, https://doi.org/10.1134/S0016793214050168, 2014b. 1270 Semenov, A. I., Shefov, N. N., and Medvedeva, I. V.: Empirical model for variation of the continuum emission in the upper atmosphere. 2. Semenov, A. I., Shefov, N. N., and Medvedeva, I. V.: Empirical model for variation of the continuum em rared components, Geomagn. Aeron., 54, 655–665, https://doi.org/10.1134/S0016793214050168, 2014b. Infrared components, Geomagn. Aeron., 54, 655–665, https://doi.org/10.1134/S0016793214050168, 2014b. 1270\nSlanger, T. G. and Copeland, R. A.: Energetic Oxygen in the Upper Atmosphere and the Laboratory, Chem. Rev., 103, 4731–4766,\nhttps://doi.org/10.1021/cr0205311, 2003. Smith, A. K., Marsh, D. R., Mlynczak, M. G., and Mast, J. C.: Temporal variations of atomic oxygen in the upper mesosphere from SABER,\nJ. Geophys. Res., 115, D18309, https://doi.org/10.1029/2009JD013434, 2010. Slanger, T. G. and Copeland, R. 1225\nNoll, S., Kimeswenger, S., Proxauf, B., Unterguggenberger, S., Kausch, W., and Jones, A. M.: 15 years of VLT/UVES OH intensities and tem-\nperatures in comparison with TIMED/SABER data, J. Atmos. Sol.-Terr. Phys., 163, 54–69, https://doi.org/10.1016/j.jastp.2017.05.012,\n2017. Noll S Plane J M C Feng W Proxauf B Kimeswenger S and Kausch W : Observations and modeling of potassium emission in the Noll, S., Plane, J. M. C., Feng, W., Proxauf, B., Kimeswenger, S., and Kausch, W.: Observations and modeling of potassium emission in the\nterrestrial nightglow, J. Geophys. Res. Atmos., 124, 6612–6629, https://doi.org/10.1029/2018JD030044, 2019. 1230 Noll, S., Plane, J. M. C., Feng, W., Proxauf, B., Kimeswenger, S., and Kausch, W.: Observations and modelin No , S.,\na e, J. . C.,\ne g, W.,\no au ,\n.,\neswe ge , S., a d\nausc , W.: Obse vat o s a d\node\ng o potass u\ne\nss o\nt e\nterrestrial nightglow, J. Geophys. Res. Atmos., 124, 6612–6629, https://doi.org/10.1029/2018JD030044, 2019. 1230 estrial nightglow, J. Geophys. Res. Atmos., 124, 6612–6629, https://doi.org/10.1029/2018JD030044, 2019. Noll,\nS.,\nSchmidt,\nC.,\nKausch,\nW.,\nBittner,\nM.,\nand\nKimeswenger,\nS.:\nEffective\nemission\nheights\nof\nvarious\nOH\nlines\nfrom X-shooter and SABER observations of a passing quasi-2-day wave, J. Geophys. Res. Atmos., 127, e2022JD036610,\nhttps://doi.org/10.1029/2022JD036610, 2022a. Noll, S., Schmidt, C., Kausch, W., Bittner, M., and Kimeswenger, S.: Data for the paper \"Effective emission heights of various OH lines\nfrom X-shooter and SABER observations of a passing quasi-2-day wave\" [Dataset], https://doi.org/10.5281/zenodo.7371927, 2022b. 1235 Noll, S., Schmidt, C., Kausch, W., Bittner, M., and Kimeswenger, S.: Data for the paper \"Effective em Noll, S., Plane, J. M. C., Feng, W., Kalogerakis, K. S., Kausch, W., Schmidt, C., Bittner, M., and Kimeswenger, S.: Measurements and\nsimulations of the nightglow continuum at Cerro Paranal [Dataset], https://doi.org/10.5281/zenodo.8335836, 2023a. Noll, S., Schmidt, C., Kausch, W., Bittner, M., and Kimeswenger, S.: Climatologies of Various OH Lines From About 90,000 X-shooter\nSpectra, J. Geophys. Res. Atmos., 128, e2022JD038275, https://doi.org/10.1029/2022JD038275, 2023b. 49 C. M.: The Mesosphere and Metals: Chemistry and Changes, Chem. Rev., 115, 4497–4541, S. P., Traub, W. A., Jucks, K. W., and Minschwaner, K.: Validation of Aura Microwave Limb Sounder OH and HO2 measurements, J. Geophys. Res., 113, D16S30, https://doi.org/10.1029/2007JD008775, 2008. Plane, J. M. C.: Atmospheric Chemistry of Meteoric Metals, Chem. Rev., 103, 4963–4984, https://doi.org/10.1021/cr0205309, 2003. Plane, J. M. C., Feng, W., and Dawkins, E. C. M.: The Mesosphere and Metals: Chemistry and Changes, Chem. Rev., 115, 4497–4541,\nhttps://doi.org/10.1021/cr500501m, 2015. 1255 heric Chemistry of Meteoric Metals, Chem. Rev., 103, 4963–4984, https://doi.org/10.1021/cr0205309, 2003. Plane, J. M. C.: Atmospheric Chemistry of Meteoric Metals, Chem. Rev., 103, 4963–4984, https://doi.org/10 Plane, J. M. C., Feng, W., and Dawkins, E. C. M.: The Mesosphere and Metals: Chemistry and Changes, Chem. Rev., 115, 4497–4541,\nhttps://doi.org/10.1021/cr500501m, 2015. 1255 https://doi.org/10.1021/cr500501m, 2015. 1255\nRollason, R. J. and Plane, J. M. C.: The reactions of FeO with O3, H2, H2O, O2 and CO2, Phys. Chem. Chem. Phys., 2, 2335–2343,\nhttps://doi.org/10.1039/B000877J, 2000. Rousselot, P., Lidman, C., Cuby, J.-G., Moreels, G., and Monnet, G.: Night-sky spectral atlas of OH emission lines in the near-infrared,\nAstron. Astrophys., 354, 1134–1150, 2000. Rollason, R. J. and Plane, J. M. C.: The reactions of FeO with O3, H2, H2O, O2 and CO2, Phys. Chem. Chem. Phys., 2, 2335–2343,\nhttps://doi.org/10.1039/B000877J, 2000. R\nl\nP Lid\nC\nC b\nJ G\nM\nl\nG\nd M\nG\nNi h\nk\nl\nl\nf OH\ni i\nli\ni\nh\ni f\nd Rousselot, P., Lidman, C., Cuby, J.-G., Moreels, G., and Monnet, G.: Night-sky spectral atlas of OH emission lines in the near-infrared,\nAstron. Astrophys., 354, 1134–1150, 2000. Russell, III, J. M., Mlynczak, M. G., Gordley, L. L., Tansock, J., and Esplin, R.: Overview of the SABER experiment and preliminary\n1260\ncalibration results, in: Optical Spectroscopic Techniques and Instrumentation for Atmospheric and Space Research III, edited by Larar,\nA. M., vol. 3756 of SPIE Proc. Ser., pp. 277–288, https://doi.org/10.1117/12.366382, 1999. Russell, III, J. M., Mlynczak, M. G., Gordley, L. L., Tansock, J., and Esplin, R.: Overview of the SABER experiment and preliminary\n1260\ncalibration results, in: Optical Spectroscopic Techniques and Instrumentation for Atmospheric and Space Research III, edited by Larar,\nA. M., vol. 3756 of SPIE Proc. Ser., pp. 277–288, https://doi.org/10.1117/12.366382, 1999. Sandor, B. J. and Clancy, R. T.: Mesospheric HOx chemistry from diurnal microwave observations of HO2, O3, and H2O, J. Geophys. Res.,\n103, 13,337–13,351, https://doi.org/10.1029/98JD00432, 1998. A.: Energetic Oxygen in the Upper Atmosphere and the Laboratory, Chem. Rev., 103, 4731–4766,\nhttps://doi.org/10.1021/cr0205311, 2003. https://doi.org/10.1021/cr0205311, 2003. Smith, A. K., Marsh, D. R., Mlynczak, M. G., and Mast, J. C.: Temporal variations of atomic oxygen in the upper mesosphere from SABER,\nJ. Geophys. Res., 115, D18309, https://doi.org/10.1029/2009JD013434, 2010. Sobolev, V. G.: Continuum in night airglow between 8000 and 11,000 Å, Planet. Space Sci., 26, 703–704, https://doi.org/10.1016/0032-\n1275\n0633(78)90103-4, 1978. 50 Xu, J., Gao, H., Smith, A. K., and Zhu, Y.: Using TIMED/SABER nightglow observations to investigate hydroxyl emission mechanisms in\nthe mesopause region, J. Geophys. Res., 117, D02301, https://doi.org/10.1029/2011JD016342, 2012. I., Binetruy, P., Bristow, P., Castillo, R., Chemla, F.,\nChristensen, L., Conconi, P., Conzelmann, R., Dam, J., de Caprio, V., de Ugarte Postigo, A., Delabre, B., di Marcantonio, P., Downing, M.,\nElswijk, E., Finger, G., Fischer, G., Flores, H., François, P., Goldoni, P., Guglielmi, L., Haigron, R., Hanenburg, H., Hendriks, I., Horrobin,\n1300\nM., Horville, D., Jessen, N. C., Kerber, F., Kern, L., Kiekebusch, M., Kleszcz, P., Klougart, J., Kragt, J., Larsen, H. H., Lizon, J.-L., Lucuix,\nC., Mainieri, V., Manuputy, R., Martayan, C., Mason, E., Mazzoleni, R., Michaelsen, N., Modigliani, A., Moehler, S., Møller, P., Norup\nSørensen, A., Nørregaard, P., Péroux, C., Patat, F., Pena, E., Pragt, J., Reinero, C., Rigal, F., Riva, M., Roelfsema, R., Royer, F., Sacco,\nG., Santin, P., Schoenmaker, T., Spano, P., Sweers, E., Ter Horst, R., Tintori, M., Tromp, N., van Dael, P., van der Vliet, H., Venema, L.,\nVidali, M., Vinther, J., Vola, P., Winters, R., Wistisen, D., Wulterkens, G., and Zacchei, A.: X-shooter, the new wide band intermediate\n1305\nresolution spectrograph at the ESO Very Large Telescope, Astron. Astrophys., 536, A105, https://doi.org/10.1051/0004-6361/201117752,\n2011. Elswijk, E., Finger, G., Fischer, G., Flores, H., François, P., Goldoni, P., Guglielmi, L., Haigron, R., Hanenburg, H., Hendriks, I., Horrobin,\n1300\nM., Horville, D., Jessen, N. C., Kerber, F., Kern, L., Kiekebusch, M., Kleszcz, P., Klougart, J., Kragt, J., Larsen, H. H., Lizon, J.-L., Lucuix,\nC., Mainieri, V., Manuputy, R., Martayan, C., Mason, E., Mazzoleni, R., Michaelsen, N., Modigliani, A., Moehler, S., Møller, P., Norup\nSørensen, A., Nørregaard, P., Péroux, C., Patat, F., Pena, E., Pragt, J., Reinero, C., Rigal, F., Riva, M., Roelfsema, R., Royer, F., Sacco,\nG., Santin, P., Schoenmaker, T., Spano, P., Sweers, E., Ter Horst, R., Tintori, M., Tromp, N., van Dael, P., van der Vliet, H., Venema, L.,\nVidali, M., Vinther, J., Vola, P., Winters, R., Wistisen, D., Wulterkens, G., and Zacchei, A.: X-shooter, the new wide band intermediate\n1305\nresolution spectrograph at the ESO Very Large Telescope, Astron. Astrophys., 536, A105, https://doi.org/10.1051/0004-6361/201117752, Elswijk, E., Finger, G., Fischer, G., Flores, H., François, P., Goldoni, P., Guglielmi, L., Haigron, R., Hanenburg, H., Hendriks, I., Horrobin,\n1300\nM., Horville, D., Jessen, N. C., Kerber, F., Kern, L., Kiekebusch, M., Kleszcz, P., Klougart, J., Kragt, J., Larsen, H. https://doi.org/10.5194/egusphere-2023-2087\nPreprint. Discussion started: 28 September 2023\nc⃝Author(s) 2023. CC BY 4.0 License. https://doi.org/10.5194/egusphere-2023-2087\nPreprint. Discussion started: 28 September 2023\nc⃝Author(s) 2023. CC BY 4.0 License. Sternberg,\nJ. R. and\nIngham,\nM. F.:\nObservations\nof\nthe\nairglow\ncontinuum,\nMon. Not. R. Astron. Soc.,\n159,\n1,\nhttps://doi.org/10.1093/mnras/159.1.1, 1972. Sullivan, P. W. and Simcoe, R. A.: A Calibrated Measurement of the Near-IR Continuum Sky Brightness Using Magellan/FIRE, Publ. Astron. Soc. Pac., 124, 1336, https://doi.org/10.1086/668849, 2012. Thomas, R. J.: Atomic hydrogen and atomic oxygen density in the mesopause region: Global and seasonal variations deduced from Solar\nMesosphere Explorer near-infrared emissions, J. Geophys. Res., 95, 16,457–16,476, https://doi.org/10.1029/JD095iD10p16457, 1990. Tuckett, R. P., Freedman, P. A., and Jones, W. J.: The emission bands of HO2 between 1·43 and 1·51 µm, Mol. Phys., 37, 379–401,\nhttps://doi.org/10.1080/00268977900100331, 1979. Tunbridge, V. M., Sandford, D. J., and Mitchell, N. J.: Zonal wave numbers of the summertime 2 day planetary wave observed in the\nmesosphere by EOS Aura Microwave Limb Sounder, J. Geophys. Res. Atmos., 116, D11103, https://doi.org/10.1029/2010JD014567,\n1290\n2011. Unterguggenberger, S., Noll, S., Feng, W., Plane, J. M. C., Kausch, W., Kimeswenger, S., Jones, A., and Moehler, S.: Measuring FeO\nvariation using astronomical spectroscopic observations, Atmos. Chem. Phys., 17, 4177–4187, https://doi.org/10.5194/acp-17-4177-2017,\n2017. Unterguggenberger, S., Noll, S., Feng, W., Plane, J. M. C., Kausch, W., Kimeswenger, S., Jones, A., and Moehler, S.: Measuring FeO\nvariation using astronomical spectroscopic observations, Atmos. Chem. Phys., 17, 4177–4187, https://doi.org/10.5194/acp-17-4177-2017,\n2017. van Rhijn, P. J.: On the brightness of the sky at night and the total amount of starlight, Publ. Kapteyn Astron. Lab. Groningen, 31, 1–83,\n1295\n1921. Vernet, J., Dekker, H., D’Odorico, S., Kaper, L., Kjaergaard, P., Hammer, F., Randich, S., Zerbi, F., Groot, P. J., Hjorth, J., Guinouard, I.,\nNavarro, R., Adolfse, T., Albers, P. W., Amans, J.-P., Andersen, J. J., Andersen, M. I., Binetruy, P., Bristow, P., Castillo, R., Chemla, F.,\nChristensen, L., Conconi, P., Conzelmann, R., Dam, J., de Caprio, V., de Ugarte Postigo, A., Delabre, B., di Marcantonio, P., Downing, M., Vernet, J., Dekker, H., D’Odorico, S., Kaper, L., Kjaergaard, P., Hammer, F., Randich, S., Zerbi, F., Groot, P. J., Hjorth, J., Guinouard, I.,\nNavarro, R., Adolfse, T., Albers, P. W., Amans, J.-P., Andersen, J. J., Andersen, M. H., Lizon, J.-L., Lucuix,\nC., Mainieri, V., Manuputy, R., Martayan, C., Mason, E., Mazzoleni, R., Michaelsen, N., Modigliani, A., Moehler, S., Møller, P., Norup\nSørensen, A., Nørregaard, P., Péroux, C., Patat, F., Pena, E., Pragt, J., Reinero, C., Rigal, F., Riva, M., Roelfsema, R., Royer, F., Sacco,\nG S\ni\nP S h\nk\nT S\nP S\nE T\nH\nR Ti\ni M T\nN\nD\nl P\nd\nVli\nH V\nL Elswijk, E., Finger, G., Fischer, G., Flores, H., François, P., Goldoni, P., Guglielmi, L., Haigron, R., Hanenburg, H., Hendriks, I.,\n1300\nM., Horville, D., Jessen, N. C., Kerber, F., Kern, L., Kiekebusch, M., Kleszcz, P., Klougart, J., Kragt, J., Larsen, H. H., Lizon, J.-L\nC., Mainieri, V., Manuputy, R., Martayan, C., Mason, E., Mazzoleni, R., Michaelsen, N., Modigliani, A., Moehler, S., Møller,\nSørensen, A., Nørregaard, P., Péroux, C., Patat, F., Pena, E., Pragt, J., Reinero, C., Rigal, F., Riva, M., Roelfsema, R., Royer,\nG., Santin, P., Schoenmaker, T., Spano, P., Sweers, E., Ter Horst, R., Tintori, M., Tromp, N., van Dael, P., van der Vliet, H., Ve\nVidali, M., Vinther, J., Vola, P., Winters, R., Wistisen, D., Wulterkens, G., and Zacchei, A.: X-shooter, the new wide band int\n1305\nresolution spectrograph at the ESO Very Large Telescope, Astron. Astrophys., 536, A105, https://doi.org/10.1051/0004-6361/20\n2011. von Savigny, C. H. A., McDade, I. C., Shepherd, G. G., and Rochon, Y.: Lower thermospheric nitric oxide concentrations der\nWINDII observations of the green nightglow continuum at 553.1 nm, Ann. Geophys., 17, 1439–1446, https://doi.org/10.100\n999-1439-9, 1999. 1310\nWest, J. B. and Broida, H. P.: Chemiluminescence and photoluminescence of diatomic iron oxide, J. Chem. Phys., 62, 25\nhttps://doi.org/10.1063/1.430837, 1975. Xu, J., Gao, H., Smith, A. K., and Zhu, Y.: Using TIMED/SABER nightglow observations to investigate hydroxyl emission mech\nthe mesopause region, J. Geophys. Res., 117, D02301, https://doi.org/10.1029/2011JD016342, 2012. M., Horville, D., Jessen, N. C., Kerber, F., Kern, L., Kiekebusch, M., Kleszcz, P., Klougart, J., Kragt, J., Larsen, H. H., Lizon, J.-L., Lucuix,\nC., Mainieri, V., Manuputy, R., Martayan, C., Mason, E., Mazzoleni, R., Michaelsen, N., Modigliani, A., Moehler, S., Møller, P., Norup\nSørensen, A., Nørregaard, P., Péroux, C., Patat, F., Pena, E., Pragt, J., Reinero, C., Rigal, F., Riva, M., Roelfsema, R., Royer, F., Sacco,\nG., Santin, P., Schoenmaker, T., Spano, P., Sweers, E., Ter Horst, R., Tintori, M., Tromp, N., van Dael, P., van der Vliet, H., Venema, L.,\nVidali M\nVinther J\nVola P Winters R\nWistisen D\nWulterkens G\nand Zacchei A : X shooter the new wide band intermediate\n1305 G., Santin, P., Schoenmaker, T., Spano, P., Sweers, E., Ter Horst, R., Tintori, M., Tromp, N., van Dael, P. 1305 Vidali, M., Vinther, J., Vola, P., Winters, R., Wistisen, D., Wulterkens, G., and Zacchei, A.: X-shooter, the new wide band intermediate\nresolution spectrograph at the ESO Very Large Telescope, Astron. Astrophys., 536, A105, https://doi.org/10.1051/0004-6361/201117752,\n2011. von Savigny, C. H. A., McDade, I. C., Shepherd, G. G., and Rochon, Y.: Lower thermospheric nitric oxide concentrations derived from\nWINDII observations of the green nightglow continuum at 553.1 nm, Ann. Geophys., 17, 1439–1446, https://doi.org/10.1007/s00585-\n999-1439-9, 1999. 1310 West, J. B. and Broida, H. P.: Chemiluminescence and photoluminescence of diatomic iron oxide, J. Chem. Phys., 62, 2566–2574,\nhttps://doi.org/10.1063/1.430837, 1975. West, J. B. and Broida, H. P.: Chemiluminescence and photoluminescence of diatomic iron oxide, J. Chem. Phys., 62, 2566–2574,\nhttps://doi.org/10.1063/1.430837, 1975. Xu, J., Gao, H., Smith, A. K., and Zhu, Y.: Using TIMED/SABER nightglow observations to investigate hydroxyl emission mechanisms in\nthe mesopause region, J. Geophys. Res., 117, D02301, https://doi.org/10.1029/2011JD016342, 2012. 51 Yee, J.-H., Crowley, G., Roble, R. G., Skinner, W. R., Burrage, M. D., and Hays, P. B.: Global simulations and observations of O(1S), O2(1Σ)\n1315\nand OH mesospheric nightglow emissions, J. Geophys. Res., 102, 19 949–19 968, https://doi.org/10.1029/96JA01833, 1997. Yee, J.-H., Crowley, G., Roble, R. G., Skinner, W. R., Burrage, M. D., and Hays, P. B.: Global simulations and observations of O(1S), O2(1Σ)\n15\nand OH mesospheric nightglow emissions, J. Geophys. Res., 102, 19 949–19 968, https://doi.org/10.1029/96JA01833, 1997.\nhttps://doi.org/10.5194/egusphere-2023-2087\nPreprint. Discussion started: 28 September 2023\nc⃝Author(s) 2023. CC BY 4.0 License. https://doi.org/10.5194/egusphere-2023-2087\nPreprint. Discussion started: 28 September 2023\nc⃝Author(s) 2023. CC BY 4.0 License. https://doi.org/10.5194/egusphere-2023-2087\nPreprint. Discussion started: 28 September 2023\nc⃝Author(s) 2023. CC BY 4.0 License. Yee, J.-H., Crowley, G., Roble, R. G., Skinner, W. R., Burrage, M. D., and Hays, P. B.: Global simulations and observations of O(1S), O2(1Σ)\n1315\nand OH mesospheric nightglow emissions, J. Geophys. Res., 102, 19 949–19 968, https://doi.org/10.1029/96JA01833, 1997. 52 52"
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https://www.nature.com/articles/s41467-022-33427-1.pdf
English
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High-resolution genome topology of human retina uncovers super enhancer-promoter interactions at tissue-specific and multifactorial disease loci
Nature communications
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Article https://doi.org/10.1038/s41467-022-33427-1 1Neurobiology, Neurodegeneration and Repair Laboratory, National Eye Institute, National Institutes of Health, MSC0610, 6 Center Drive, Bethesda, MD 20892, USA. 2In silichrom Ltd, First Floor, Angel Court, 81 St Clements St, Oxford OX4 1AW, UK. 3These authors contributed equally: Claire Marchal, Nivedita Singh, Zachary Batz, Jayshree Advani. e-mail: swaroopa@nei.nih.gov High-resolution genome topology of human retina uncovers super enhancer-promoter interactions at tissue-specific and multi- factorial disease loci Claire Marchal1,2,3, Nivedita Singh1,3, Zachary Batz 1,3, Jayshree Advani1,3, Catherine Jaeger 1, Ximena Corso-Díaz1 & Anand Swaroop 1 Received: 1 June 2022 Accepted: 16 September 2022 Check for updates Chromatin organization and enhancer-promoter contacts establish unique spatiotemporal gene expression patterns in distinct cell types. Non-coding genetic variants can influence cellular phenotypes by modifying higher-order transcriptional hubs and consequently gene expression. To elucidate genomic regulation in human retina, we mapped chromatin contacts at high resolution and integrated with super-enhancers (SEs), histone marks, binding of CTCF and select transcription factors. We show that topologically associated domains (TADs) with central SEs exhibit stronger insulation and augmented contact with retinal genes relative to TADs with edge SEs. Merging genome- wide expression quantitative trait loci (eQTLs) with topology map reveals physical links between 100 eQTLs and corresponding eGenes associated with retinal neurodegeneration. Additionally, we uncover candidate genes for susceptibility variants linked to age-related macular degeneration and glau- coma. Our study of high-resolution genomic architecture of human retina provides insights into genetic control of tissue-specific functions, suggests paradigms for missing heritability, and enables the dissection of common blinding disease phenotypes. The three-dimensional (3D) architecture of the human genome is regulated across multiple levels of organization, yielding precise spa- tiotemporal patterns of gene expression for morphogenesis and functional specification1,2. Gene regulation occurs within transcrip- tional units through productive enhancer-promoter contacts and/or by inclusion within transcriptionally active membraneless structures, called phase-separated condensates3–6. The transcriptional units are contained within megabase-sized self-interacting chromatin structures known as topologically associated domains (TADs). The boundaries of TADs are enriched for binding of structural proteins including CTCF and cohesin7–9. Genome organization also exhibits A (active) and B (inactive) chromatin compartments, which display distinct patterns of DNA replication and transcription along with differences in regulatory marks10–13. Across the 3D hierarchy, genome topology undergoes dynamic and contextual physical alterations in distinct tissues and cell types14,15. These adaptations correlate with activation of specific cis- regulatory elements (CREs) that contribute to the establishment of unique gene expression patterns14,16,17. Cell-type specific gene expres- sion is further orchestrated by super-enhancers (SEs), regulatory regions spanning over tens of kilobases that are highly enriched for master transcription factor (TF) binding and co-localized with the active histone mark H3K27Ac18–20. 1Neurobiology, Neurodegeneration and Repair Laboratory, National Eye Institute, National Institutes of Health, MSC0610, 6 Center Drive, Bethesda, MD 20892, USA. Results Distinct chromatin interactions at retinal genes suggest their important role in tissue-specific gene regulation. We then assessed whether these interactions are conserved between human and mouse retina. To quantify shared chromatin interactions, we evaluated the number of gene pairs present in the same TAD in our human and a previously reported mouse retina Hi-C datasets32. We observed that 21.8% of mouse gene pairs in a mouse TAD are also localized in the corresponding human TAD (Fig. 2E top panel), and that35.7% of mouse gene pairs interacting through a chromatin loop in the retina are also interacting in human (Fig. 2E bottom panel). These numbers likely represent an underestimate of shared chromatin structure due to the relatively lower resolution of the mouse retina Hi-C data. As an example, the PITX2/EGF locus, located in a human/mouse syntenic region, extends over 3 TADs in the human retina. This region encom- passes several expressed genes, with EGF and ENPEP genes interacting together, each at a TAD boundary (Fig. 2F). Self-interacting domains corresponding to the human TADs (Fig. 2F, dashed lines) are detect- able in the mouse retina (Fig. 2F), even though not identified as TADs in the original study. Furthermore, in both species, chromatin loops are observed between EGF and ENPEP (Fig. 2F). These findings show that retina-expressed genes exhibit a conserved chromatin topology, underlining its importance for the regulation of retinal genes and likely involving tissue-specific CREs. Article Article Over the past decade, millions of human genetic variations have been cataloged21,22, permitting exploration of evolutionary divergence as well as healthy and disease phenotypes. Genome-wide association studies (GWAS) of common multifactorial retinal diseases afflicting adult human populations, such as age-related macular degeneration (AMD) and glaucoma, have predominantly identified common variants in non-coding regions of the genome23,24. However, the biological relevance of association signals has been difficult to assess because of the local linkage disequilibrium (LD) in the region of lead variants, hindering identification of specific causal genes and variants25. Even in Mendelian retinal diseases with over 200 associated genes identified (RetNet; https://sph.uth.edu/retnet/disease.htm), causal mutations can only be identified in about half of the patients (primarily in Eur- opean population)26 and genotype-phenotype correlations have been difficult to decipher. Non-coding variants in cis-regulatory regions may lead to variable penetrance of pathogenic coding mutations in their target genes27, genetic epistasis28, or account for missing heritability29. Widespread variability in gene expression observed in humans can be assigned to cis- or trans-acting variants (expression quantitative trait loci, eQTLs) and epistasis30. Elucidating how trait-associated genetic variations impact the regulatory landscape and consequently pheno- types requires understanding the 3D genome topology in relevant tissues and cell types. qualitatively and quantitatively precise regulation6. We then char- acterized the loops associated with expressed chromatin at the genome-wide level. Intra-A compartment loops are shorter compared to the intra-B (Tukey HSD: p < 0.001; 95% CI 416–449 kb) and the A-B compartment loops (Tukey HSD: p < 0.001; 95% CI 308–398 kb; Fig. 1E). These intra-A loops, corresponding to the active chromatin, span less than 1 Mb on average (Fig. 1E) and are mostly constrained within TADs (Supplementary fig. 1D). Human retina chromatin topology is tissue-specific and con- served in mouse To assess whether the identified chromatin features are specific to the retina, we compared our dataset with Hi-C datasets from human neurons (anterior cingulate cortex (ACC) neurons)31, GM12878 lym- phoblastoid immortalized cells (LCL)2, and colon cancer cells (HCT116; generated in this study). The correlation, as measured by SCC, is the highest among our four retina samples (Fig. 2A). Retina compartments reveal high correlation with those of ACC neurons though limited to few chromosomes, likely because of the improper calling of com- partments in the low-resolution ACC dataset (Fig. 2B, Supplementary fig. 2A). The compartments in the non-transformed LCL dataset are broadly similar with retinal compartments, whereas the cancer cells exhibit the lowest correlation (Fig. 2B). We hypothesized that regions in the A compartment, which are detected in retina but not in other tissues, are related to retina-specific functions. Indeed, retina-specific genes such as OTX2, EYS, PDC are present in the A compartment only in the retina (Fig. 2C). Given the high correlation between retina and ACC neurons, we compared the contact maps of PAX6, OTX2 and CRX between the two datasets. As predicted, interactions at the PAX6 locus are similar in neurons and retina concordant with its expression in both tissues (Fig. 2D, left panel), whereas loci encoding OTX2 and CRX, two key retinal TFs, demonstrate a high number of local interactions in the retina but not in neurons (Fig. 2D, central and right panels). Here, we report a high-resolution chromatin contact map of the adult human retina by performing Hi-C1. Further integration of chro- matin contacts with histone marks, chromatin accessibility, selected TF binding, and gene expression datasets reveals targets of CREs and uncovers properties of 3D chromatin organization of SEs in human retina. Finally, we combine the resulting retinal genomic regulation network with eQTLs and genetic variants identified through GWAS of AMD and glaucoma. Thus, our analysis of regulatory 3D genome architecture contributes to better understanding of genetic control of human retinal phenotypes. Nature Communications| (2022) 13:5827 High-resolution genome topology of human retina uncovers super enhancer-promoter interactions at tissue-specific and multi- factorial disease loci 2In silichrom Ltd, First Floor, Angel Court, 81 St Clements St, Oxford OX4 1AW, UK. 3These authors contributed equally: Claire Marchal, Nivedita Singh, Zachary Batz, Jayshree Advani. e-mail: swaroopa@nei.nih.gov Nature Communications| (2022) 13:5827 Nature Communications| (2022) 13:5827 Nature Communications| (2022) 13:5827 1 https://doi.org/10.1038/s41467-022-33427-1 Deep Hi-C sequencing identifies chromatin structures in human retina at 5 kb resolution Moreov active and poised enhancers are enriched at regions upstream to T C E D B 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 X 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 X Compartments Loops NRL ABHD12B BMP4 OTX2 KCNH5 VSX2 ESRRB FLRT2 Chr14:17-107 Mb Chromosome Chromosome 0 10,000+ 0 400+ H3K27Ac (ChromHMM) Super-enhancers (ROSE) heritability T Retinal eQTLs DHRS2 NRL PCK2 NOP9 23,750 24,000 24,250 NEDD8 DHRS4 0 28 0 28 74,500 75,000 75,500 76,000 76,500 LIN52 ABCD4 FOS TTLL5 TGFB3 GPATCH2L ESRRB NPC2 YLPM1 NEK9 JDP2 VASH1 PROX2 VSX2 0.1 1 10 Loop size (Mb) Compartments A-B B-B A-A Super-enhancers (ROSE) C B 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 X 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 X Compartments NRL ABHD12B BMP4 OTX2 KCNH5 VSX2 ESRRB FLRT2 Chr14:17-107 Mb Chromosome Chromosome 0 10,000+ 0 400+ (ROSE) Retinal eQTLs C B 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 X 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 X Chromosome Chromosome 0 10,000+ ( C B 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 X 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 X Chr14:17-107 Mb Chromosome Chromosome 0 10,000+ ( ) B C E D 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 X 12 13 14 15 16 17 18 19 20 21 22 X Compartments Loops VSX2 ESRRB FLRT2 Chromosome DHRS2 NRL PCK2 NOP9 23,750 24,000 24,250 NEDD8 DHRS4 0 28 0 28 74,500 75,000 75,500 76,000 76,500 LIN52 ABCD4 FOS TTLL5 TGFB3 GPATCH2L ESRRB NPC2 YLPM1 NEK9 JDP2 VASH1 PROX2 VSX2 0.1 1 10 Loop size (Mb) Compartments A-B B-B A-A E 0.1 1 10 Loop size (Mb) Compartments A-B B-B A-A D E 1 H3K4me234) and repressive (H3K9me3) histone marks. Deep Hi-C sequencing identifies chromatin structures in human retina at 5 kb resolution Figure 1A illustrates the design of our study to elucidate regulatory networks controlling gene expression in the human retina and their potential disruption by genetic variants associated with clinical phe- notypes. Briefly, we have generated a high-resolution chromatin con- tact map of the human retina using Hi-C and integrated this data with histone marks, chromatin accessibility, CTCF, and binding of selected TFs. We then explored the genome topology of eQTLs and variants associated with AMD and glaucoma (Fig. 1A). To decipher the 3D organization of chromatin, we performed Hi-C analysis of four independent postmortem human retina samples. The Hi-C data exhibited high similarity among samples with a stratified correlation coefficient (SCC) of >0.97 for all autosomes. We therefore combined the data from all samples to obtain a total sequencing depth of 1.148 billion read pairs. A high proportion of valid interactions (>95% of the total mapped interactions) and typical percentage of trans- interactions (23.6%; Supplementary table 1) indicated the high quality of our dataset. We obtained 704 million valid chromatin contacts (Supplementary table 1), which are equally distributed among the chromosomes, attaining a resolution of 3 kb (Fig. 1B, C, Supplementary fig. 1A). Our data identified 67,841 significant chromatin contacts and 2948 TADs (Fig. 1A, C, D). Retinal SEs overlap with highly expressed tissue-specific genes and are enriched for accessible retinal TF binding motifs As predicted, the genes expressed in the retina are detected in the A chromatin compartment, while most silent genes appear in the B compartment (Fig. 1C; Supplementary Fig. 1B, C). For example, NRL is expressed in rods, ESRRB in rods and horizontal cells, and VSX2 in bipolar and Muller glia cells; each of the three genes is present within a well-defined A compartment TAD and participates in extensive intra- TAD chromatin looping (Fig. 1D), which is likely required for Chromatin looping plays a crucial role in promoting physical interac- tions between CREs and their target genes to precisely control gene expression. To identify retinal CREs, we determined chromatin states using a Hidden Markov Model (ChromHMM)33 based on chromatin accessibility (Supplementary fig. Deep Hi-C sequencing identifies chromatin structures in human retina at 5 kb resolution C E D B 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 X 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 X Compartments Loops NRL ABHD12B BMP4 OTX2 KCNH5 VSX2 ESRRB FLRT2 Chr14:17-107 Mb Chromosome Chromosome 0 10,000+ 0 400+ Hi-C H3K4me3 H3K9me3 H3K4me2 H3K27Ac ATAC-seq Chromatin states (ChromHMM) Super-enhancers (ROSE) Promoter Enhancer Enhancer Enhancer Pol II y tili b is s e c c A sfi t o M c a 7 2 a 3 H s r e c n a h n E − r e p u S CTCF Retinal TFs AMD + Glaucoma GWAS Candidate causal disease genes g regulation in 3D Identify missing heritability A T Retinal eQTLs DHRS2 NRL PCK2 NOP9 23,750 24,000 24,250 NEDD8 DHRS4 0 28 0 28 74,500 75,000 75,500 76,000 76,500 LIN52 ABCD4 FOS TTLL5 TGFB3 GPATCH2L ESRRB NPC2 YLPM1 NEK9 JDP2 VASH1 PROX2 VSX2 0.1 1 10 Loop size (Mb) Compartments A-B B-B A-A Nature Communications| (2022)13:5827 Identify missing heritability C E D B 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 X 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 X Compartments Loops NRL ABHD12B BMP4 OTX2 KCNH5 VSX2 ESRRB FLRT2 Chr14:17-107 Mb Chromosome Chromosome 0 10,000+ 0 400+ H3K27Ac Chromatin states (ChromHMM) Super-enhancers (ROSE) Promoter Identify missing heritability T Retinal eQTLs DHRS2 NRL PCK2 NOP9 23,750 24,000 24,250 NEDD8 DHRS4 0 28 0 28 74,500 75,000 75,500 76,000 76,500 LIN52 ABCD4 FOS TTLL5 TGFB3 GPATCH2L ESRRB NPC2 YLPM1 NEK9 JDP2 VASH1 PROX2 VSX2 0.1 1 10 Loop size (Mb) Compartments A-B B-B A-A 4me234) and repressive (H3K9me3) histone marks. We set the el for 10 chromatin states (see Methods, and Supplementary 3B) and performed manual annotation. Of these states, we oved three with low signal and annotated one as promoters (high matin accessibility and enriched for all active marks), five as active active marks except H3K4me3), and one as heterochromatin (enrich for H3K9me3) (Fig. 3A). Deep Hi-C sequencing identifies chromatin structures in human retina at 5 kb resolution We set the model for 10 chromatin states (see Methods, and Supplementary fig. 3B) and performed manual annotation. Of these states, we removed three with low signal and annotated one as promoters (high chromatin accessibility and enriched for all active marks), five as active or poised enhancers (high chromatin accessibility and enriched for all active marks except H3K4me3), and one as heterochromatin (enric for H3K9me3) (Fig. 3A). Promoters and active or poised enhancer enriched for binding of CTCF and key retinal TFs such as CRX, OTX2, MEF2D, CREB, and RORB (Supplementary fig. 3C). Moreo active and poised enhancers are enriched at regions upstream to whereas promoters are enriched at TSS only (Supplementary fig. Deep Hi-C sequencing identifies chromatin structures in human retina at 5 kb resolution 3A) and active (H3K4me3, H3K27Ac, Nature Communications| (2022) 13:5827 2 Article https://doi.org/10.1038/s41467-022-33427-1 A Hi-C H3K4me3 H3K9me3 H3K4me2 H3K27Ac ATAC-seq Chromatin states (ChromHMM) Super-enhancers (ROSE) Promoter Enhancer Enhancer Enhancer Pol II High resolution (3kb) chromatin contacts Integrated mapping of retinal cis-regulatory elements y tili b is s e c c A sfi t o M c a 7 2 a 3 H s r e c n a h n E − r e p u S >60,000 loops CTCF Retinal TFs AMD + Glaucoma GWAS Candidate causal disease genes Retinal gene regulation in 3D Identify missing heritability A T Retinal eQTLs C E D B A 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 X 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 X Compartments Loops NRL ABHD12B BMP4 OTX2 KCNH5 VSX2 ESRRB FLRT2 Chr14:17-107 Mb Chromosome Chromosome 0 10,000+ 0 400+ Hi-C H3K4me3 H3K9me3 H3K4me2 H3K27Ac ATAC-seq Chromatin states (ChromHMM) Super-enhancers (ROSE) Promoter Enhancer Enhancer Enhancer Pol II High resolution (3kb) chromatin contacts Integrated mapping of retinal cis-regulatory elements y tili b is s e c c A sfi t o M c a 7 2 a 3 H s r e c n a h n E − r e p u S >60,000 loops CTCF Retinal TFs AMD + Glaucoma GWAS Candidate causal disease genes Retinal gene regulation in 3D Identify missing heritability A T Retinal eQTLs DHRS2 NRL PCK2 NOP9 23,750 24,000 24,250 NEDD8 DHRS4 74,500 75,000 75,500 76,000 76,500 LIN52 ABCD4 FOS TTLL5 TGFB3 GPATCH2L ESRRB NPC2 YLPM1 NEK9 JDP2 VASH1 PROX2 VSX2 0.1 1 10 Loop size (Mb) A B B B A A A Hi-C H3K4me3 H3K9me3 H3K4me2 H3K27Ac ATAC-seq Chromatin states (ChromHMM) Super-enhancers (ROSE) Promoter Enhancer Enhancer Enhancer Pol II High resolution (3kb) chromatin contacts Integrate cis-reg >60,000 loops CTCF Retinal TFs AM R A 0 400+ Integrated mapping of retinal cis-regulatory elements y tili b is s e c c A sfi t o M c a 7 2 a 3 H s r e c n a h n E − r e p u S AMD + Glaucoma GWAS Candidate causal disease genes Retinal gene regulation in 3D Identify missing heritability A T Retinal eQTLs Integrated mapping of retinal cis-regulatory elements Integrated mapping of retinal cis-regulatory elements H3K4me234) and repressive (H3K9me3) histone marks. Deep Hi-C sequencing identifies chromatin structures in human retina at 5 kb resolution Promoters and active or poised enhancers enriched for binding of CTCF and key retinal TFs such as CRX, N OTX2, MEF2D, CREB, and RORB (Supplementary fig. 3C). https://doi.org/10.1038/s41467-022-33427-1 Fig. 1 | High-resolution Hi-C identifies human retinal chromatin structures. Fig. 1 | High-resolution Hi-C identifies human retinal chromatin structures. A Schematic of project workflow. Input data on blue backgrounds were generated in this manuscript; input data on yellow backgrounds were downloaded from public databases. Hi-C contact maps of observed contacts across (B) all chromo- somes, (C) the q arm of chromosome 14, and (D) the NRL and VSX2/ESRRB loci. Scale represents the number of raw contacts. Loops at the NRL and VSX2/ESRRB loci are plotted on the top; contact maps are below with TADs plotted as black triangles. E Distribution of chromatin loop sizes within and across A/B compartments (n = 15,441 loops within A compartment, n = 4318 loops within B compartments, n = 2697 loops in A-B compartments). Boxplots represent the median and inter- quartile range (IQR); whiskers mark 1.5x the IQR; data beyond 1.5x the IQR are plotted as individual points. The three groups differ significantly (one-way ANOVA, F2,22453 = 2232, p < 0.001). Abbreviations: ROSE Rank Ordering of Super-Enhancers, AMD Age-related macular degeneration, GWAS Genome-wide association study. Fig. 1 | High-resolution Hi-C identifies human retinal chromatin structures. A Schematic of project workflow. Input data on blue backgrounds were generated in this manuscript; input data on yellow backgrounds were downloaded from public databases. Hi-C contact maps of observed contacts across (B) all chromo- somes, (C) the q arm of chromosome 14, and (D) the NRL and VSX2/ESRRB loci. Scale represents the number of raw contacts. Loops at the NRL and VSX2/ESRRB loci are plotted on the top; contact maps are below with TADs plotted as black triangles. A Schematic of project workflow. Input data on blue backgrounds were generated in this manuscript; input data on yellow backgrounds were downloaded from public databases. Hi-C contact maps of observed contacts across (B) all chromo- somes, (C) the q arm of chromosome 14, and (D) the NRL and VSX2/ESRRB loci. Scale represents the number of raw contacts. Loops at the NRL and VSX2/ESRRB loci are plotted on the top; contact maps are below with TADs plotted as black triangles. represents the number of raw contacts. Loops at the NRL and VSX2/ESRRB loci are plotted on the top; contact maps are below with TADs plotted as black triangles. F2,22453 2232, p 0.001). Abbreviations: ROSE Rank Ordering of Super Enhancer AMD Age-related macular degeneration, GWAS Genome-wide association study. https://doi.org/10.1038/s41467-022-33427-1 Mouse Chr3, PITX2/EGF locus Human Chr4, PITX2/EGF locus 0 10+ 0 10+ A D F LCL Colon cancer ACC Neuron Retina 1 Retina 2 Retina 3 Retina 4 Colon cancer ACC Neuron Retina 1 Retina 2 Retina 3 Retina 4 LCL 0 1 B ACC Neuron Colon cancer LCL 0.5 0.9 Compartment Correlation with Retina 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 Chromosome <0.5 Retina-enriched genes DUXB EYS GJD2 OTX2 CDH15 PDC Retina ACC Neuron LCL Colon cancer 457 182 279 390 310 205 343 119 388 244 306 1,858 347 730 11,477 C GNGT1 HCN1 IMPG1 PRTG RARB RCVRN E 51,175 (21.8%) 13,824 183,704 Human Mouse In TADs 70 (35.7%) 5,125 126 Human Mouse In Loops Conservation of gene-gene pairs TMEM260 EXOC5 OTX2-AS1 AP5M1 OTX2 Chr14:56.5-57.4 Mb, OTX2 locus Chr11:30.9-32.1 Mb, PAX6 locus DCDC1 DNAJC24 RCN1 IMMP1L PAX6 Retina ACC Neuron CRX SELENOW Chr19:47.6-47.9 Mb, CRX locus 0 20+ 0 10+ 0 10+ Fig. 2 | Retinal chromatin interactions are tissue specific and conserved in mouse. A Stratum-adjusted correlation coefficient (SCC) showing similarity of contact maps between tissue types averaged across all autosomal chromosomes. B Chromosome-level correlation of A/B compartments between retina and various tissues. C Venn diagram of gene transcription start sites present in the A com- partment across sample types. A selection of retina-enriched genes (see methods) exclusively identified as A compartment in retina samples are highlighted. D Comparison of Hi-C contact maps for retina and ACC neuron at the PAX6, OTX2 and CRX loci. Scales represent the number of Knight-Ruiz (KR) normalized contact counts. E Human-mouse conservation of gene-gene shared occupancywithin a TA (top) and gene-gene contacts via Hi-C loop calls (bottom). Percentages given are relative to the number of mouse gene-gene pairs. F Hi-C contact maps and loops a syntenic region of the human and mouse genomes. Solid lines on contact map indicate computationally called TADs; dashed lines on the mouse contact map show human TAD boundaries overlaid on mouse genome. Scales represent the number of KR normalized contacts. Abbreviations LCL Lymphoblastoid B-cell lin ACC Anterior cingulate cortex, TADs Topologically associating domains. Deep Hi-C sequencing identifies chromatin structures in human retina at 5 kb resolution We set the model for 10 chromatin states (see Methods, and Supplementary fig. 3B) and performed manual annotation. Of these states, we removed three with low signal and annotated one as promoters (high chromatin accessibility and enriched for all active marks), five as active or poised enhancers (high chromatin accessibility and enriched for all active marks except H3K4me3), and one as heterochromatin (enriched for H3K9me3) (Fig. 3A). Promoters and active or poised enhancers are enriched for binding of CTCF and key retinal TFs such as CRX, NRL, OTX2, MEF2D, CREB, and RORB (Supplementary fig. 3C). Moreover, active and poised enhancers are enriched at regions upstream to TSS, whereas promoters are enriched at TSS only (Supplementary fig. 3D). Nature Communications| (2022) 13:5827 Nature Communications| (2022) 13:5827 3 Article https://doi.org/10.1038/s41467-022-33427-1 B ACC Neuron Colon cancer LCL 0.5 0.9 Compartment Correlation with Retina 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 Chromosome <0.5 A LCL Colon cancer ACC Neuron Retina 1 Retina 2 Retina 3 Retina 4 Colon cancer ACC Neuron Retina 1 Retina 2 Retina 3 Retina 4 LCL 0 1 B B A D tin TMEM260 EXOC5 OTX2-AS1 AP5M1 OTX2 Chr14:56.5-57.4 Mb, OTX2 locus Chr11:30.9-32.1 Mb, PAX6 locus DCDC1 DNAJC24 RCN1 IMMP1L PAX6 Retina ACC Neuron CRX SELENOW Chr19:47.6-47.9 Mb, CRX locus 0 20+ 0 10+ 0 10+ D Colon ACC Retina-enriched genes DUXB EYS GJD2 OTX2 CDH15 PDC Retina ACC Neuron LCL Colon cancer 457 182 279 390 310 205 343 119 388 244 306 1,858 347 730 11,477 C GNGT1 HCN1 IMPG1 PRTG RARB RCVRN D D C F E 51,175 (21.8%) 13,824 183,704 Human Mouse In TADs 70 (35.7%) 5,125 126 Human Mouse In Loops Conservation of gene-gene pairs Mouse Chr3, PITX2/EGF locus Human Chr4, PITX2/EGF locus 0 10+ 0 10+ E F counts. E Human-mouse conservation of gene-gene shared occupancywithin a TAD (top) and gene-gene contacts via Hi-C loop calls (bottom). Percentages given are relative to the number of mouse gene-gene pairs. F Hi-C contact maps and loops in a syntenic region of the human and mouse genomes. Solid lines on contact maps indicate computationally called TADs; dashed lines on the mouse contact map show human TAD boundaries overlaid on mouse genome. Scales represent the number of KR normalized contacts. Abbreviations LCL Lymphoblastoid B-cell line, ACC Anterior cingulate cortex, TADs Topologically associating domains. Fig. 2 | Retinal chromatin interactions are tissue specific and conserved in Fig. 2 | Retinal chromatin interactions are tissue specific and conserved in mouse. A Stratum-adjusted correlation coefficient (SCC) showing similarity of contact maps between tissue types averaged across all autosomal chromosomes. B Chromosome-level correlation of A/B compartments between retina and various tissues. C Venn diagram of gene transcription start sites present in the A com- partment across sample types. A selection of retina-enriched genes (see methods) exclusively identified as A compartment in retina samples are highlighted. D Comparison of Hi-C contact maps for retina and ACC neuron at the PAX6, OTX2 and CRX loci. Scales represent the number of Knight-Ruiz (KR) normalized contact Fig. 2 | Retinal chromatin interactions are tissue specific and conserved in mouse. https://doi.org/10.1038/s41467-022-33427-1 A Stratum-adjusted correlation coefficient (SCC) showing similarity of contact maps between tissue types averaged across all autosomal chromosomes. B Chromosome-level correlation of A/B compartments between retina and various tissues. C Venn diagram of gene transcription start sites present in the A com- partment across sample types. A selection of retina-enriched genes (see methods) exclusively identified as A compartment in retina samples are highlighted. D Comparison of Hi-C contact maps for retina and ACC neuron at the PAX6, OTX2 and CRX loci. Scales represent the number of Knight-Ruiz (KR) normalized contact Nature Communications| (2022) 13:5827 4 4 A B C E G F H D H3K9me3 H3K27Ac H3K4me3 H3K4me2 ATAC-seq NRL OTX1/2 CRX CREB RORB CTCF 24,070 kb 24,100 kb CPNE6 NRL PCK2 SE Genes 20 40 60 % Genes Overlapping Non-Retina Ubiquitous Retina & Brain Retina Horizontal Bipolar Cone Müller Rod SE Random 0 50 100 150 200 100 200 300 SE Size (kb) SEs 4 8 12 16 Mean FPKM SE CRE Random 0 10 10 10 10 10 10 1 0 5 0 20 0 5 0 50 10 Relative position ATAC H3K4me2 H3K4me3 H3K27Ac H3K9me3 0 Coverage Promoter Active or Poised Enhancer Hetero- chromatin R2 = 0.86 0 50 100 250 500 750 1000 1250 Retina−expressed genes per chromosome SEs per chromosome 50 100 150 200 250 Chromosome Size (Mb) 0 50 100 SEs per chromosome R2 = 0.32 Rod expression Cone expression SE 0 50 100+ Normalized Expression C2H2 ZFs ZBTB18 ZFP82 bZIP FOS DBP JUNB FOSB NFE2L2 NFE2L1 MAFG MAFB BACH2 NR with C4 ZFs RORA NR4A1 ESRRG NR2C1 ESRRA ESRRB NR4A2 HOX CRX OTX2 POU2F1 MEIS1 POU3F1 bHLH NEUROD1 TCF12 TCF3 MADS MEF2C MEF2D MEF2A HMG TCF7 FOX FOXO3 FOXP1 FOXK1 Tryptophan cluster SMARCA1 In SE Out SE 5 10 CRX, no NRL NRL, no CRX NRL & CRX CREB CRX MEF2D NRL OTX RORB Accessible Footprints Overlapping ChIP-seq Peak (%) In SE Out SE 20 40 Fig. 3 | Retinal SE identification and characterization. A Chromatin states iden- tified from histone marks and ATAC-seq data (low signal states not shown, see Fig. S3). Plots in each cell indicate the mean coverage for each mark across the genomic regions aligned and resized to a 0 to 1 scale, e.g., regions assigned the heterochromatin state contain uniformly high H3K9me3 coverage across the entire region and low coverage of all other marks. https://doi.org/10.1038/s41467-022-33427-1 H Rod expression Cone expression SE bZIP FOS DBP JUNB FOSB NFE2L2 NFE2L1 MAFG MAFB BACH2 NR with C4 ZFs RORA NR4A1 ESRRG NR2C1 ESRRA ESRRB NR4A2 In SE Out SE CRX, NRL, H Rod expression Cone expression SE 0 50 100+ Normalized Expression C2H2 ZFs ZBTB18 ZFP82 bZIP FOS DBP JUNB FOSB NFE2L2 NFE2L1 MAFG MAFB BACH2 NR with C4 ZFs RORA NR4A1 ESRRG NR2C1 ESRRA ESRRB NR4A2 HOX CRX OTX2 POU2F1 MEIS1 POU3F1 bHLH NEUROD1 TCF12 TCF3 MADS MEF2C MEF2D MEF2A HMG TCF7 FOX FOXO3 FOXP1 FOXK1 In SE Out SE CRX, NRL, NR H 0 50 100+ Normalized Expression C2H2 ZFs ZBTB18 ZFP82 HOX CRX OTX2 POU2F1 MEIS1 POU3F1 bHLH NEUROD1 TCF12 TCF3 MADS MEF2C MEF2D MEF2A HMG TCF7 FOX FOXO3 FOXP1 FOXK1 Tryptophan cluster SMARCA1 Fig. 3 | Retinal SE identification and characterization. A Chromatin states iden- tified from histone marks and ATAC-seq data (low signal states not shown, see Fig. S3). Plots in each cell indicate the mean coverage for each mark across the genomic regions aligned and resized to a 0 to 1 scale, e.g., regions assigned the heterochromatin state contain uniformly high H3K9me3 coverage across the entire region and low coverage of all other marks. B Number of SE per chromosome versus chromosome size (left) and versus number of retina-expressed genes (right). Correlation is measured as Pearson’s r2. C Size distribution of SEs in retina. D Mean expression of genes with transcription start sites (TSS) in SE (n = 1), CRE (n = 1), and random SE-sized genomic regions (n = 100). Boxplots represent the median and interquartile range (IQR); whiskers mark 1.5x the IQR; data beyond 1.5x the IQR are plotted as individual points. E Percentage of genes in various enrichment groups (see methods) with at least one TSS located in a SE (n = 1) or random SE-sized region (n = 100). Boxplots represent the median and interquartile range (IQR); whiskers mark 1.5x the IQR; data beyond 1.5x the IQR are plotted as individual points. [F] SEs, histone marks, chromatin accessibility, and TF residency for the NRL locus. Fig. 3 | Retinal SE identification and characterization. A Chromatin states iden- G Percentage of accessible genomic footprints (defined via ATAC-seq) inside and outside of SEs which contain ChIP-seq narrow peaks for the indicated TF(s). outside of SEs which contain ChIP seq narrow peaks for the indicated TF(s). https://doi.org/10.1038/s41467-022-33427-1 Plots in each cell indicate the mean coverage for each mark across the genomic regions aligned and resized to a 0 to 1 scale, e.g., regions assigned the heterochromatin state contain uniformly high H3K9me3 coverage across the entire region and low coverage of all other marks. B Number of SE per chromosome versus chromosome size (left) and versus number of retina-expressed genes (right). Correlation is measured as Pearson’s r2. C Size distribution of SEs in retina. D Mean expression of genes with transcription start sites (TSS) in SE (n = 1), CRE (n = 1), and random SE-sized genomic regions (n = 100). Boxplots represent the median and interquartile range (IQR); whiskers mark 1.5x the IQR; data beyond 1.5x the IQR are plotted as individual points. E Percentage of genes in various enrichment groups (see methods) with at least one TSS located in a SE (n = 1) or random SE-sized region (n = 100). Boxplots represent the median and interquartile range (IQR); whiskers mark 1.5x the IQR; data beyond 1.5x the IQR are plotted as individual points. [F] SEs, histone marks, chromatin accessibility, and TF residency for the NRL locus. G Percentage of accessible genomic footprints (defined via ATAC-seq) inside a outside of SEs which contain ChIP-seq narrow peaks for the indicated TF(s). H Selection of TF motifs enriched in SE-overlapping accessible genomic footpri containing NRL and CRX relative to accessible footprints without NRL or CRX. T bar on top indicates whether the gene coding for the TF is overlapping a SE (red) not (grey). The heatmap shows normalized gene expression in rods and cones fr the Human Protein Atlas. TF families as defined by TFClass are indicated along bottom edge. Abbreviations ATAC-seq Assay for transposase-accessible chroma sequencing, SE Super-enhancer, FPKM Fragments per kilobase million, TSS Tra scription start site, ChIP-seq Chromatin immunoprecipitation sequencing, C2H ZFs C2H2 zinc finger factors, bZIP Basic leucine zipper factors, NR with C4 ZFs Nuclear receptors with C4 zinc fingers, HOX Homeodomain factors, bHLH Bas helix-loop-helix factors, MADS MADS-box factors, HMG High-mobility group domain factors, FOX Fork head/winged helix factors, RHR Rel homology region factors. https://doi.org/10.1038/s41467-022-33427-1 Article https://doi.org/10.1038/s41467-022-33427 https://doi.org/10.1038/s41467-022-33427-1 Article A B C E G F H D H3K9me3 H3K27Ac H3K4me3 H3K4me2 ATAC-seq NRL OTX1/2 CRX CREB RORB CTCF 24,070 kb 24,100 kb CPNE6 NRL PCK2 SE Genes 20 40 60 % Genes Overlapping Non-Retina Ubiquitous Retina & Brain Retina Horizontal Bipolar Cone Müller Rod SE Random 0 50 100 150 200 100 200 300 SE Size (kb) SEs 4 8 12 16 Mean FPKM SE CRE Random 0 10 10 10 10 10 10 1 0 5 0 20 0 5 0 50 10 Relative position ATAC H3K4me2 H3K4me3 H3K27Ac H3K9me3 0 Coverage Promoter Active or Poised Enhancer Hetero- chromatin R2 = 0.86 0 50 100 250 500 750 1000 1250 Retina−expressed genes per chromosome SEs per chromosome 50 100 150 200 250 Chromosome Size (Mb) 0 50 100 SEs per chromosome R2 = 0.32 SE 5 10 CRX, no NRL NRL, no CRX NRL & CRX CREB CRX MEF2D NRL OTX RORB Accessible Footprints Overlapping ChIP-seq Peak (%) In SE Out SE 20 40 B 50 100 150 200 250 Chromosome Size (Mb) 0 50 100 SEs per chromosome R2 = 0.32 A 0 10 10 10 10 10 10 1 0 5 0 20 0 5 0 50 10 Relative position ATAC H3K4me2 H3K4me3 H3K27Ac H3K9me3 0 Coverage Promoter Active or Poised Enhancer Hetero- chromatin B C A E F D H3K H3K H3K H3K G 20 40 60 % Genes Overlapping Non-Retina Ubiquitous Retina & Brain Retina Horizontal Bipolar Cone Müller Rod SE Random 4 8 12 16 Mean FPKM SE CRE Random E D F G A R 5 10 CRX, no NRL NRL, no CRX NRL & CRX CREB CRX MEF2D NRL OTX RORB Accessible Footprints Overlapping ChIP-seq Peak (%) In SE Out SE 20 40 G H CTCF Rod expression Cone expression SE 0 50 100+ Normalized Expression C2H2 ZFs ZBTB18 ZFP82 bZIP FOS DBP JUNB FOSB NFE2L2 NFE2L1 MAFG MAFB BACH2 NR with C4 ZFs RORA NR4A1 ESRRG NR2C1 ESRRA ESRRB NR4A2 HOX CRX OTX2 POU2F1 MEIS1 POU3F1 bHLH NEUROD1 TCF12 TCF3 MADS MEF2C MEF2D MEF2A HMG TCF7 FOX FOXO3 FOXP1 FOXK1 Tryptophan cluster SMARCA1 In SE Out SE CRX, NRL, NRL Fig. 3 | Retinal SE identification and characterization. A Chromatin states iden- tified from histone marks and ATAC-seq data (low signal states not shown, see Fig. S3). https://doi.org/10.1038/s41467-022-33427-1 B Number of SE per chromosome versus chromosome size (left) and versus number of retina-expressed genes (right). Correlation is measured as Pearson’s r2. C Size distribution of SEs in retina. D Mean expression of genes with transcription start sites (TSS) in SE (n = 1), CRE (n = 1), and random SE-sized genomic regions (n = 100). Boxplots represent the median and interquartile range (IQR); whiskers mark 1.5x the IQR; data beyond 1.5x the IQR are plotted as individual points. E Percentage of genes in various enrichment groups (see methods) with at least one TSS located in a SE (n = 1) or random SE-sized region (n = 100). Boxplots represent the median and interquartile range (IQR); whiskers mark 1.5x the IQR; data beyond 1.5x the IQR are plotted as individual points. [F] SEs, histone marks chromatin accessibility and TF residency for the NRL locus G Percentage of accessible genomic footprints (defined via ATAC-seq) inside an outside of SEs which contain ChIP-seq narrow peaks for the indicated TF(s). H Selection of TF motifs enriched in SE-overlapping accessible genomic footprin containing NRL and CRX relative to accessible footprints without NRL or CRX. Th bar on top indicates whether the gene coding for the TF is overlapping a SE (red) o not (grey). The heatmap shows normalized gene expression in rods and cones fro the Human Protein Atlas. TF families as defined by TFClass are indicated along th bottom edge. Abbreviations ATAC-seq Assay for transposase-accessible chromat sequencing, SE Super-enhancer, FPKM Fragments per kilobase million, TSS Tran scription start site, ChIP-seq Chromatin immunoprecipitation sequencing, C2H2 ZFs C2H2 zinc finger factors, bZIP Basic leucine zipper factors, NR with C4 ZFs Nuclear receptors with C4 zinc fingers, HOX Homeodomain factors, bHLH Basic helix-loop-helix factors, MADS MADS-box factors, HMG High-mobility group domain factors, FOX Fork head/winged helix factors, RHR Rel homology region factors. https://doi.org/10.1038/s41467-022-33427-1 H Selection of TF motifs enriched in SE-overlapping accessible genomic footprints containing NRL and CRX relative to accessible footprints without NRL or CRX. The bar on top indicates whether the gene coding for the TF is overlapping a SE (red) or not (grey). The heatmap shows normalized gene expression in rods and cones from the Human Protein Atlas. TF families as defined by TFClass are indicated along the bottom edge. Abbreviations ATAC-seq Assay for transposase-accessible chromatin sequencing, SE Super-enhancer, FPKM Fragments per kilobase million, TSS Tran- scription start site, ChIP-seq Chromatin immunoprecipitation sequencing, C2H2 ZFs C2H2 zinc finger factors, bZIP Basic leucine zipper factors, NR with C4 ZFs Nuclear receptors with C4 zinc fingers, HOX Homeodomain factors, bHLH Basic helix-loop-helix factors, MADS MADS-box factors, HMG High-mobility group domain factors, FOX Fork head/winged helix factors, RHR Rel homology region factors. We then identified 1,325 SEs using the density of H3K27Ac at the retinal CREs (promoters and active or poised enhancers) after removing loci corresponding to TSS. The distribution of SEs along chromosomes is not homogenous and shows a very low correlation (R2 = 0.31) between the number of SEs per chromosome and the chromosome size (Fig. 3B left panel and Supplementary fig. 3E). Interestingly, however, we detected a high correlation (R2 = 0.86) between the number of retina-expressed genes and the number of SEs per chromosome (Fig. 3B, right panel). Retinal SEs also form large chromatin domains spanning over 10 to 300 kb (Fig. 3C). Nature Communications| (2022) 13:5827 5 https://doi.org/10.1038/s41467-022-33427-1 Article Article Integration of SEs with transcriptome data revealed 2.17x higher average expression of genes overlapping with SEs compared to those with CREs and 2.89x higher than 100 sets of random SE-sized loci (henceforth called “random regions”, see Methods for details) (Fig. 3D, Supplementary Data 1). Notably, nearly 50% of retina-enriched genes and 70% of rod-enriched genes show an overlap with a SE compared to ~5% with random regions (Fig. 3E). The key photoreceptor-specific gene NRL is included within a large SE enriched for active histone marks and accessible chromatin regions (Fig. 3F). Accessible footprints within SEs are enriched for binding peaks of retinal TFs such as NRL, CRX, OTX1/2, CREB and RORB (Fig. 3G). Furthermore, hotspots of TF binding sites are present predominantly in SEs compared to CREs or random regions (Supplementary fig. 3F). https://doi.org/10.1038/s41467-022-33427-1 We also confirmed that accessible chromatin regions in retinal SEs are enriched for binding of two key photoreceptor TFs, CRX and NRL, alone or in combination (Fig. 3G, right panel). We discovered that CRX and NRL bound loci are enriched for binding motifs of other TFs involved in retinal gene reg- ulation including OTX2, MEF2C, NEUROD1 and MAFG (Fig. 3H, Sup- plementary fig. 3G, Supplementary Data 2). In addition, we uncovered an enrichment of motifs for retina-expressed TFs, e.g., ZBTB18, for which a specific function has not been delineated in retinal cell types (Fig. 3H, Supplementary Data 2). The genes encoding many of these TFs with enriched binding motifs also overlap SEs, suggesting their potential role in maintaining retinal homeostasis (Fig. 3H, Supple- mentary Data 2). which, for each genomic locus, quantifies the interaction frequency between neighboring loci; a lower score indicates stronger insulation. Our analysis showed that the presence of SEs at the edge of TADs is associated with weaker insulation, i.e., increased contact between neighboring TADs (Fig. 5A, right panel). We then evaluated whether SE positioning within TADs was associated with the number of inter-TAD contacts. We identified more chromatin interactions within SE- containing TADs compared to other TADs, despite no significant dif- ference in loop size among A-compartment TADs (Fig. 5B). In con- cordance with the observed weaker insulation, TADs with a SE at one edge have a significantly higher proportion of loops crossing the TAD boundary compared to other TADs (Fig. 5B). Next, we looked at the function of the SE target genes, i.e., genes with TSS overlapping or interacting with SE. We observed that TADs with edge SEs are enriched for stress response genes indicating the need for more dynamic and transitional interactions (Fig. 5C), whereas retinal genes are primarily enriched in TADs with central SEs (Fig. 5C, Supplementary fig. 5A). The SE overlapping the stress-response gene FOS is an example of an edge SE within a low insulation TAD that may be affected by variation in regions extending beyond their own TAD boundaries (Fig. 5D). Similarly, at the ATF4 locus, a SE lying at the edge of a lowly insulated TAD is in contact with regions outside of the TAD (Supplementary fig. 5B). Integration of chromatin loops, SEs and CREs with retinal eQTLs eQTLs link specific genetic variants to changes in expression of a target gene (henceforth called “eGene”). SEs are enriched for intra-TAD looping and contacts with reg- ulatory elements SEs may contact other regulatory regions to form large transcriptional units capable of regulating multiple genes, as previously observed in cell lines35,36. Integrated analysis revealed that retinal SEs are enriched for shorter chromatin loops compared to the random regions (t99 = 69.46; p < 0.001; Fig. 4A) and show extensive intra-SE looping (Fig. 4B). Distinctly, nearly all SE-interacting loops are <1 Mb (Fig. 4A) indicating that SEs primarily harbor interactions within TADs. To vali- date this observation, we quantified the percentage of intra-TAD loops overlapping with SEs. We detected an enrichment of loops interacting within the same TAD compared to the random regions (t99 = −24.76; p < 0.001), whereas we observed fewer than expected loops interact- ing across TADs (t99 = −18.81; p < 0.001; Fig. 4C). To quantify the significance of chromatin looping at SEs, we defined SE interactions as those with another regulatory element or with a target gene. We discovered that SEs are enriched for regulatory interactions compared to random regions, making direct contact with 3,059 unique CREs (t99 = −361; p < 0.001), 1,701 unique TSS (t99 = −346; p < 0.001), and 217 unique SEs (t99 = −651; p < 0.001; Fig. 4D). Remarkably, the genes specifically expressed in the retina and/or brain are mostly overlapping with SEs, whereas the genes interacting but not overlapping with SEs are enriched for ubiquitous genes (Supplemen- tary fig. 4A). Some SEs interact with many CREs and thereby likely play important roles in coordinating gene expression patterns. For exam- ple, the SE overlapping with MIR9-2, a non-coding gene crucial for neuronal development37 localizes at a TAD boundary and contacts several CREs (Fig. 4E). We also identified several clusters of SEs inter- acting with one another via chromatin looping near retina-enriched genes, including VEGFA (Fig. 4F) and UBE4B (Fig. 4G). We then assessed the physical proximity between a variant and the promoter region (±2.5 kb from TSS) of its eGene, as described39. This analysis allowed us to discriminate between promoter eQTLs, distal eQTLs, and distal eQTLs interacting with a promoter (pieQTLs, see methods) (Fig. 6C). We identified 2,374 eQTLs overlapping with a loop foot; of these, 1,275 are pieQTLs and 100 interact with their own eGene promoter (Fig. 6D). Among these pieQTLs, 27 are associated with retinopathies, including 3 that interact with their own eGene promoter (MYO7A, MERTK and PRPH2 genes). https://doi.org/10.1038/s41467-022-33427-1 To identify eQTLs that are poten- tially relevant for retinal gene regulation, we incorporated 14,859 previously reported retina eQTLs38 with our dataset and observed that 77% of these localize to the A compartment compared to 18.5% in the B compartment (Fig. 6A, Supplementary Data 3). Interestingly, the A compartment includes 82.9% of eQTLs linked to retinopathy genes (RetNet, https://sph.uth.edu/RetNet/), 90% of those associated with AMD loci23, and 53.5% eQTLs correlated to glaucoma loci24 (Fig. 6A). eQTLs are enriched for variant-eGene pairs sharing the same TAD (67.1% of all eQTLs, 75.4% of those in retinopathies, 73.3% AMD- associated eQTLs, and 79.2% glaucoma eQTLs) compared to randomly generated TADs (Fig. 6B; Supplementary Data 3). Thus, most retinal eQTLs are present within the active chromatin compartment and reside in the same TAD, providing a direct mechanism to explain the impact of a variant on the eGene. SEs are enriched for intra-TAD looping and contacts with reg- ulatory elements Finally, 4 pieQTLs are each associated with AMD and glaucoma loci (Supplemen- tary Data 3). Additional analysis identified 2,410 and 880 eQTLs in CREs (CRE- eQTLs) and SEs (SE-eQTLs), respectively, with 58.5% of CRE-eQTLs and 69.3% of SE-eQTLs also intersecting the associated eGene (Fig. 6E, Supplementary Data 3). A majority of retinopathy-associated CRE- eQTLs (39/60) and SE-eQTLs (38/42) overlaps the respective eGene (Fig. 6E, Supplementary Data 3). Furthermore, we discovered 3 CRE- eQTLs and 2 SE-eQTLs in AMD-associated loci and 17 CRE-eQTLs and 5 SE-eQTLs in glaucoma-associated loci (Fig. 6E). In accordance with their potential role in gene regulation, all CRE- and SE-overlapping eQTLs exhibit prominent H3K27Ac marks, with promoter eQTLs showing even higher levels compared to distal eQTLs, though not statistically significant for the disease-associated eQTLs, due to the lower number of eQTLs (all eQTLs at CREs: t1059.5 = −14.266, p < 2.2e-16, Intra-TAD positioning of SEs is associated with boundary insu- lation and biological function of target genes Nature Communications| (2022) 13:5827 Intra-TAD positioning of SEs is associated with boundary insu- lation and biological function of target genes Boxplots represent the median and interquartile ran (IQR); whiskers mark 1.5x the IQR; data beyond 1.5x the IQR are plotted as individ points. E–G Chromatin loops, SEs, CREs, TADs, and Hi-C contact maps for the MIR9-2 (zoom-in on right panel), [F] VEGFA, and [G] UBE4B loci. Abbreviations Super-enhancer, TAD Topologically associating domain, CRE Cis-regulatory ele ment, TSS Transcription start site. Intra-TAD positioning of SEs is associated with boundary insu- lation and biological function of target genes To explore the chromatin landscape around SEs, we assessed physical properties of the corresponding host TADs. We first compared the TAD size in relation to the position of SE within the TAD. We observed that, within the A compartment, TADs containing SEs are larger than TADs without SEs, except when the SE is located at one of the TAD edges (Fig. 5A, left panel). We then calculated the insulation score, Nature Communications| (2022) 13:5827 6 https://doi.org/10.1038/s41467-022-33427-1 Article 0 50 100 150 200 250 0 10 20 30 40 Number of Loops All loopings with the region Loopings internal to the region 100 50 10 1 % of regions RBP7 UBE4B KIF1B SLC25A33 TMEM201 PIK3CDA CLSTN1 PGD CENPS LZIC NMNAT1 9,750 10,250 10,000 chr1: 9.6-10.5 Mb, UBE4B locus POLH GTPBP2 RSPH9 MRPS18A VEGFA MRPL14 CAPN11 MYMX SLC29A1 HSP90AB1 SPATS1 TCTE1 AARS2 TMEM63B 43,750 44,000 44,250 chr6: 43.6-44.4 Mb, VEGFA locus CETN3 TMEM161B MIR9-2 MEF2C 88,000 89,000 90,000 chr5: 87.4-90.4 Mb, MIR9-2 locus MIR9-2 chr5: 88.6-88.9 Mb, MIR9-2 locus MEF2C 85,600 85,700 85,800 85,900 SEs Genes Loops Contact Map & TADs CREs SEs Genes Loops Contact Map & TADs CREs 1000 2000 3000 SE-SE SE-CRE Unique Pairs SE-TSS SE Random 25 50 75 Within TAD Across TAD % SE Loops 105 106 107 SE Random Loop size (bp) A B C E D F G ig. 4 | SEs display a distinct chromatin looping pattern. A Size distribution of oops intersecting with at least one SE (n = 14,491 loops) or random SE-sized enomic region (n = 299,795 total loops across 100 randomly generated regions, ee methods). Boxplots represent the median and interquartile range (IQR); whis- ers mark 1.5x the IQR; data beyond 1.5x the IQR are plotted as individual points. B Distribution of loops per SE or random SE-sized genomic region either making ontact with at least one foot touching an SE/random region (left) or both feet ontained within a single SE/random region (right). C Percentage of loops in con- act with SEs (n = 1) or random regions (n = 100) that cross TAD boundaries. Boxplots represent the median and interquartile range (IQR); whiskers mark 1. the IQR; data beyond 1.5x the IQR are plotted as individual points. D Number o unique pairs of features connected by chromatin looping (n = 1 SEs dataset, n = 1 random regions datasets). Intra-TAD positioning of SEs is associated with boundary insu- lation and biological function of target genes Article https://doi.org/10.1038/s41467-022-3342 0 50 100 150 200 250 0 10 20 30 40 Number of Loops All loopings with the region Loopings internal to the region 100 50 10 1 % of regions CETN3 TMEM161B MIR9-2 MEF2C 88,000 89,000 90,000 chr5: 87.4-90.4 Mb, MIR9-2 locus MIR9-2 chr5: 88.6-88.9 Mb, MIR9-2 locus MEF2C 85,600 85,700 85,800 85,900 SEs Genes Loops Contact Map & TADs CREs 1000 2000 3000 SE-SE SE-CRE Unique Pairs SE-TSS SE Random 25 50 75 Within TAD Across TAD % SE Loops 105 106 107 SE Random Loop size (bp) A B C E D 0 50 100 150 200 250 0 10 20 30 40 Number of Loops All loopings with the region Loopings internal to the region 100 50 10 1 % of regions SE Random 105 106 107 SE Random Loop size (bp) B 0 50 100 150 200 250 0 10 20 30 40 Number of Loops All loopings with the region Loopings internal to the region 100 50 10 1 % of regions 1000 2000 3000 SE-SE SE-CRE Unique Pairs SE-TSS SE Random 25 50 75 Within TAD Across TAD % SE Loops 105 106 107 SE Random Loop size (bp) A B C D 25 50 75 Within TAD Across TAD % SE Loops C 105 106 107 SE Random Loop size (bp) A B 0 50 100 150 200 250 0 10 20 30 40 Number of Loops All loopings with the region Loopings internal to the region 100 50 10 1 % of regions SE Random 25 50 75 Within TAD cross TA % SE Loops B C 1000 2000 3000 SE-SE SE-CRE Unique Pairs SE-TSS D D C B A E E CETN3 TMEM161B MIR9-2 MEF2C 88,000 89,000 90,000 chr5: 87.4-90.4 Mb, MIR9-2 locus SEs Genes Loops Contact Map & TADs CREs W E MIR9-2 chr5: 88.6-88.9 Mb, MIR9-2 locus MEF2C 85,600 85,700 85,800 85,900 POLH GTPBP2 RSPH9 MRPS18A VEGFA MRPL14 CAPN11 MYMX SLC29A1 HSP90AB1 SPATS1 TCTE1 AARS2 TMEM63B 43,750 44,000 44,250 chr6: 43.6-44.4 Mb, VEGFA locus SEs Genes Loops Contact Map & TADs CREs F RBP7 UBE4B KIF1B SLC25A33 TMEM201 PIK3CDA CLSTN1 PGD CENPS LZIC NMNAT1 9,750 10,250 10,000 chr1: 9.6-10.5 Mb, UBE4B locus G G F chr1: 9.6-10.5 Mb, UBE4B locus Boxplots represent the median and interquartile range (IQR); whiskers mark 1.5x Fig. 4 | SEs display a distinct chromatin looping pattern. Nature Communications| (2022) 13:5827 Genome topology links target genes to AMD- and Glaucoma- associated risk variants CFDP1 and AC009054.2 through 6 chromatin loops (Fig. 7B, bottom panel). We also identified 5 AMD lead variants overlapping with a CRE and localizing to gene bodies (ARHGAP21, ARMS2/HTRA1, CNN2, APOE and TNFRSF10A genes) and one AMD lead variant (rs3750846) over- lapping with a SE and gene bodies of ARMS2 and BX842242.1 (Supple- mentary Data 4). We then leveraged our dataset to investigate chromatin contacts of 52 and 127 lead GWAS variants identified for AMD and glaucoma, respectively23,24. We also identified and filtered variants in linkage dis- equilibrium (LD) with the lead variants (filtered LD variants, see methods)21 and integrated these with retinal chromatin loops and regulatory elements. Among glaucoma variants, 12 lead variants and 493 filtered LD variants overlap a chromatin loop (Fig. 7C, Supplementary Data 4). Of these, 8 lead variants (TRAPPC3, LPP, TFAP2B/PKHD1, PDE7B, FBXO32, ADAMTS8, RIC8B and LINC00396/COL4A1 loci) and 363 fil- tered LD variants are in contact with gene bodies or TSS (Fig. 7C, Supplementary Data 4). In ACC neurons, 10 lead variants and 2,118 filtered LD variants overlap loops; of these, 9 lead variants and 1,890 filtered LD variants are in contact with a gene body or a TSS. For example, the lead variant rs72904286, associated with TFAP2B/ PKHD1 locus is in contact with the gene body and TSS of TFAP2B through a chromatin loop (Fig. 7D, top panel). The lead variant rs1037013, associated with RIC8B locus is in contact with the gene body of 4 target genes which include RIC8B, RFX4, POLR3B, and AC079385.1 and with the TSS of RFX4 through chromatin looping (Fig. 7D, bottom panel). We also detected 16 glaucoma lead variants overlapping a CRE with 14 of these localizing to gene bodies or TSS, and 5 glaucoma lead variants overlapping a SE and a gene body or TSS (Supplementary Data 4). g y Among AMD variants, 4 lead and 142 filtered LD variants overlap with chromatin loops (Fig. 7A, Supplementary Data 4). Of these, 3 lead variants (C20orf85, CTRB2/CTRB1 and KMT2E/SRPK2 loci) and 136 fil- tered LD variants distributed among 10 loci [COL8A1, PILRB/PILRA, TGFBR1, ARHGAP21, RDH5/CD63, ACAD10, RAD51B, C3 (NRTN/FUT6), APOE (EXOC3L2/MARK4) and SLC16A8 loci] are in contact with gene bodies or TSS through chromatin loops (Fig. 7A, Supplementary Data 4). Intra-TAD positioning of SEs is associated with boundary insu- lation and biological function of target genes A Size distribution of loops intersecting with at least one SE (n = 14,491 loops) or random SE-sized genomic region (n = 299,795 total loops across 100 randomly generated regions, see methods). Boxplots represent the median and interquartile range (IQR); whis- kers mark 1.5x the IQR; data beyond 1.5x the IQR are plotted as individual points. B Distribution of loops per SE or random SE-sized genomic region either making contact with at least one foot touching an SE/random region (left) or both feet contained within a single SE/random region (right). C Percentage of loops in con- tact with SEs (n = 1) or random regions (n = 100) that cross TAD boundaries. Boxplots represent the median and interquartile range (IQR); whiskers mark 1.5x the IQR; data beyond 1.5x the IQR are plotted as individual points. D Number of unique pairs of features connected by chromatin looping (n = 1 SEs dataset, n = 100 random regions datasets). Boxplots represent the median and interquartile range (IQR); whiskers mark 1.5x the IQR; data beyond 1.5x the IQR are plotted as individual points. E–G Chromatin loops, SEs, CREs, TADs, and Hi-C contact maps for the [E] MIR9-2 (zoom-in on right panel), [F] VEGFA, and [G] UBE4B loci. Abbreviations SE Super-enhancer, TAD Topologically associating domain, CRE Cis-regulatory ele- ment, TSS Transcription start site. potentially functionally-relevant eQTLs overlapping a SE and in physical contact with the promoter of their eGene (e.g., PRPH2 and MYO7A loci; Fig. 6G, top panels) or through chromatin looping (PRPH2 locus; Fig. 6G, top left panel). We also identified eQTLs overlapping a CRE, either at the promoter of the eGene (e.g., ABCA1 locus; Fig. 6G, bottom left panel) or by contacting the promoter through chromatin looping (e.g., PCK2 locus; Fig. 6G, bottom right panel). retinopathies-associated eQTLs at CREs: t16.603 = −3.6947, p = 0.001861, glaucoma-associated eQTLs at CREs: t4.0371 = −2.2145, p = 0.09055, all eQTLs at SEs: t133.15 = −8.3212, p = 9.098e-14, retinopathies-associated eQTLs at SEs: t8.0834 = −2.8884, p = 0.02003, glaucoma-associated eQTLs at SEs: t1.0051 = −1.2834, p = 0.4206, Fig. 6F). p g Overall, most eQTLs are physically close to their respective eGene, either overlapping the eGene or its promoter, or being in contact through chromatin looping. Intra-TAD positioning of SEs is associated with boundary insu- lation and biological function of target genes Our analysis identified multiple Nature Communications| (2022) 13:5827 7 https://doi.org/10.1038/s41467-022-33427-1 Article A B C D 500 1000 TAD Size (kb) Compartment B A A A SE Present - - + + SE at TAD edge - - - + *** *** *** *** *** −0.4 −0.2 Log2Insulation Compartment B A A A SE Present - - + + SE at TAD edge - - - + *** *** *** **** *** 15 30 Total loops in TAD Compartment B A A A SE Present - - + + SE at TAD edge - - - + *** * ****** 5 15 25 % Loops crossing TAD boundaries B A A A - - + + - - - + *** *** ** *** ** 400 800 Mean Loop Size (Kb) B A A A - - + + - - - + *** *** *** HSP90 chaperone cycle for steroid hormone receptors Cellular responses to external stimuli Cellular responses to stress Visual phototransduction The phototransduction cascade Non-Edge Edge 0.0050 0.0001 Adj. p Gene Ratio 0.025 0.125 SE Position in TAD Reactome 0.075 0.01 TMED10 FOS JDP2 NEK9 75,100 75,300 75,500 FOS locus, chr14: 75.1 - 75.5 Mb Loops SEs CREs Genes Insulation TADs 0 20+ Fig. 5 | SEs intra-TAD positioning is linked to TADs biological features. Char- cterizing TADs fully contained within B compartment or A compartment; A ompartment TADs are further divided based upon SE presence/absence and SE position (edge SEs are SEs <5 kb from TAD boundary) (n = 680 TADs in B com- partment, n = 670 TADs without SE in A compartment, n = 495 TADs with non- edge SE in A compartment, n = 183 TADs with edge SE in A compartment). These groups vary in [A] mean TAD size (two-sided, one-way ANOVA, F2,1557 = 270.8, p < 0.001) and TAD boundary insulation (two-sided, one-way ANOVA, F2,1548 = 91.01, p < 0.001; lower log2 insulation score corresponds to stronger nsulation) as well as in [B] the number of chromatin loops in contact with the TAD (two-sided, one-way ANOVA F3,2722 = 19.85, p < 0.001), mean size of those loops (two-sided, one-way ANOVA F3,2722 = 75.47, p < 0.001), and percentage of loops which cross TAD boundaries (two-sided, one-way ANOVA F3,2722 = 18.66, p < 0.001). * indicates p < 0.05; ** p < 0.01; ***p < 0.001 by ANOVA with Tukey HSD post-hoc test. Intra-TAD positioning of SEs is associated with boundary insu- lation and biological function of target genes These groups vary in [A] mean TAD size (two-sided, one-way ANOVA, F2,1557 = 270.8, p < 0.001) and TAD boundary insulation (two-sided, one-way ANOVA, F2,1548 = 91.01, p < 0.001; lower log2 insulation score corresponds to stronger insulation) as well as in [B] the number of chromatin loops in contact with the loops which cross TAD boundaries (two-sided, one-way ANOVA F3,2722 = 18.66, p < 0.001). * indicates p < 0.05; ** p < 0.01; ***p < 0.001 by ANOVA with Tukey HSD post-hoc test. Error bars represent standard error of the mean. C Enriched Reactome terms among genes with a TSS residing within or in contact via chro- matin looping with a non-edge or edge SE. D Chromatin loops, SEs, CREs, log2 insulation score, TADs, and Hi-C contact maps for the FOS locus. Abbreviations SE: Super-enhancer, TAD: Topologically associating domain; CRE: Cis-regulatory element; TSS: Transcription start site. Intra-TAD positioning of SEs is associated with boundary insu- lation and biological function of target genes D Chromatin loops, SEs, CREs, log2 insulation score, TADs, and Hi-C contact maps for the FOS locus. Abbreviations SE: Super-enhancer, TAD: Topologically associating domain; CRE: Cis-regulatory element; TSS: Transcription start site. B 15 30 Total loops in TAD Compartment B A A A SE Present - - + + SE at TAD edge - - - + *** * ****** 5 15 25 % Loops crossing TAD boundaries B A A A - - + + - - - + *** *** ** *** ** 400 800 Mean Loop Size (Kb) B A A A - - + + - - - + *** *** *** B A D 15 30 Total loops in TAD partment B A A A Present - - + + AD edge - - - + *** * ****** 5 15 25 % Loops crossing TAD boundaries B A A A - - + + - - - + *** *** ** *** ** 400 800 Mean Loop Size (Kb) B A A A - - + + - - - + *** *** *** TMED10 FOS JDP2 NEK9 75,100 75,300 75,500 FOS locus, chr14: 75.1 - 75.5 Mb Loops SEs CREs Genes Insulation TADs 0 20+ TAD (two-sided, one-way ANOVA F3,2722 = 19.85, p < 0.001), mean size of those loops (two-sided, one-way ANOVA F3,2722 = 75.47, p < 0.001), and percentage of loops which cross TAD boundaries (two-sided, one-way ANOVA F3,2722 = 18.66, p < 0.001). * indicates p < 0.05; ** p < 0.01; ***p < 0.001 by ANOVA with Tukey HSD post-hoc test. Error bars represent standard error of the mean. C Enriched Reactome terms among genes with a TSS residing within or in contact via chro- matin looping with a non-edge or edge SE. D Chromatin loops, SEs, CREs, log2 insulation score, TADs, and Hi-C contact maps for the FOS locus. Abbreviations SE: Super-enhancer, TAD: Topologically associating domain; CRE: Cis-regulatory element; TSS: Transcription start site. D TMED10 FOS JDP2 NEK9 75,100 75,300 75,500 FOS locus, chr14: 75.1 - 75.5 Mb Loops SEs CREs Genes Insulation TADs 0 20+ C D HSP90 chaperone cycle for steroid hormone receptors Cellular responses to external stimuli Cellular responses to stress Visual phototransduction The phototransduction cascade Non-Edge Edge 0.0050 0.0001 Adj. p Gene Ratio 0.025 0.125 SE Position in TAD Reactome 0.075 0.01 C C D 0 Fig. Intra-TAD positioning of SEs is associated with boundary insu- lation and biological function of target genes 5 | SEs intra-TAD positioning is linked to TADs biological features. Char- TAD (two-sided, one-way ANOVA F3,2722 = 19.85, p < 0.001), mean size of those loops (two-sided, one-way ANOVA F3,2722 = 75.47, p < 0.001), and percentage of loops which cross TAD boundaries (two-sided, one-way ANOVA F3,2722 = 18.66, p < 0.001). * indicates p < 0.05; ** p < 0.01; ***p < 0.001 by ANOVA with Tukey HSD post-hoc test. Error bars represent standard error of the mean. C Enriched Reactome terms among genes with a TSS residing within or in contact via chro- matin looping with a non-edge or edge SE. D Chromatin loops, SEs, CREs, log2 insulation score, TADs, and Hi-C contact maps for the FOS locus. Abbreviations SE: Super-enhancer, TAD: Topologically associating domain; CRE: Cis-regulatory element; TSS: Transcription start site. Fig. 5 | SEs intra-TAD positioning is linked to TADs biological features. Char- acterizing TADs fully contained within B compartment or A compartment; A compartment TADs are further divided based upon SE presence/absence and SE position (edge SEs are SEs <5 kb from TAD boundary) (n = 680 TADs in B com- partment, n = 670 TADs without SE in A compartment, n = 495 TADs with non- edge SE in A compartment, n = 183 TADs with edge SE in A compartment). These groups vary in [A] mean TAD size (two-sided, one-way ANOVA, F2,1557 = 270.8, p < 0.001) and TAD boundary insulation (two-sided, one-way ANOVA, F2,1548 = 91.01, p < 0.001; lower log2 insulation score corresponds to stronger insulation) as well as in [B] the number of chromatin loops in contact with the Fig. 5 | SEs intra TAD positioning is linked to TADs biological features. Char acterizing TADs fully contained within B compartment or A compartment; A compartment TADs are further divided based upon SE presence/absence and SE position (edge SEs are SEs <5 kb from TAD boundary) (n = 680 TADs in B com- partment, n = 670 TADs without SE in A compartment, n = 495 TADs with non- edge SE in A compartment, n = 183 TADs with edge SE in A compartment). Intra-TAD positioning of SEs is associated with boundary insu- lation and biological function of target genes Error bars represent standard error of the mean. C Enriched Reactome terms among genes with a TSS residing within or in contact via chro- matin looping with a non-edge or edge SE. D Chromatin loops, SEs, CREs, log2 insulation score, TADs, and Hi-C contact maps for the FOS locus. Abbreviations SE: Super-enhancer, TAD: Topologically associating domain; CRE: Cis-regulatory element; TSS: Transcription start site. A 500 1000 TAD Size (kb) Compartment B A A A SE Present - - + + SE at TAD edge - - - + *** *** *** *** *** −0.4 −0.2 Log2Insulation Compartment B A A A SE Present - - + + SE at TAD edge - - - + *** *** *** **** *** B D 0.4 0.2 ent B A A A ent - - + + ge - - - + *** *** *** **** *** 15 30 Total loops in TAD Compartment B A A A SE Present - - + + SE at TAD edge - - - + *** * ****** 5 15 25 % Loops crossing TAD boundaries B A A A - - + + - - - + *** *** ** *** ** 400 800 Mean Loop Size (Kb) B A A A - - + + - - - + *** *** *** Edge 0.0050 0.0001 Adj. p Gene Ratio 0.025 0.125 on in TAD 0.075 0.01 TMED10 FOS JDP2 NEK9 75,100 75,300 75,500 FOS locus, chr14: 75.1 - 75.5 Mb Loops SEs CREs Genes Insulation TADs 0 20+ s biological features. Char- ent or A compartment; A SE presence/absence and SE y) (n = 680 TADs in B com- nt, n = 495 TADs with non- SE in A compartment). These ay ANOVA, F2,1557 = 270.8, one-way ANOVA, corresponds to stronger n loops in contact with the TAD (two-sided, one-way ANOVA F3,2722 = 19.85, p < 0.001), mean size of those loops (two-sided, one-way ANOVA F3,2722 = 75.47, p < 0.001), and percentage of loops which cross TAD boundaries (two-sided, one-way ANOVA F3,2722 = 18.66, p < 0.001). * indicates p < 0.05; ** p < 0.01; ***p < 0.001 by ANOVA with Tukey HSD post-hoc test. Error bars represent standard error of the mean. C Enriched Reactome terms among genes with a TSS residing within or in contact via chro- matin looping with a non-edge or edge SE. Nature Communications| (2022) 13:5827 Genome topology links target genes to AMD- and Glaucoma- associated risk variants In contrast, no overlap is detected between chromatin loops in ACC neurons and AMD leadvariants even though 162 of the 196 filtered LD variants overlapping a loop in ACC are in contact with a gene body or TSS. Notably, at the KMT2E/SRPK2 locus, the AMD-associated lead variant rs1142 is in contact with the TSS of KMT2E and SRPK2 and with the gene body of 7 genes, which include KMT2E, SRPK2, EFCAB10, LINC01004, PUS7, AC007384.1 and AC005070.3 through 9 chromatin loops (Fig. 7B, top panel). The lead variant rs72802342, associated with the CTRB2/CTRB1 locus, connects with the gene bodies and TSS of Nature Communications| (2022) 13:5827 8 rs414285 PRPH2 TBCC URB2 42,660 kb 42,700 kb 42,740 kb chr6: 42.6-42.7 Mb, PRPH2 locus rs2437817 ABCA1 CT70 104,800 kb 105,000 kb 105,200 kb Loops eQTLs SEs CREs H3K27Ac TADs Genes chr9:104.7-105.2 Mb, ABCA1 locus CAPN5 MYO7A OMP 77,100 kb 77,150 kb 77,200 kb rs113813737 rs1893759 chr11: 77.1-77.2 Mb, MYO7A locus Loops eQTLs SEs CREs H3K27Ac TADs Genes rs11624730 CARMIL3 CPNE6 NRL PCK2 24,060 kb 24,080 kb 24,100 kb chr14: 24.0-24.1 Mb, PCK2 locus 1 Mb Promoter eQTL TSS Promoter Distal eQTL SE or CRE Promoter-interacting eQTL 10 100 500 1000 H3K27Ac total signal CRE SE 100 1175 1099 eQTL Only Loop Overlaps: All Retinopathies AMD Non-eGene pieQTL eGene pieQTL Glaucoma 0 50 100 All Retinopathies AMD % of eQTLs Comp. A Comp. B N/A Glaucoma 0 40 80 % eQTL-eGene in same TAD Random Real All Retinopathies AMD Glaucoma *** *** *** *** B A C E D F G eQTLs Overlapping Promoter Distal Overlaps eGene CRE SE Retinopathies All CRE SE CRE SE AMD Glaucoma 3 24 21 4 2 4 8 AMD CRE SE 1 2 Retinopathies CRE SE 10 30 50 CRE SE All 1000 2000 CRE SE Glaucoma 8 16 3 ig. 6 | Epigenetic context of retinal eQTLs and eQTLs associated with eye isease. Proportion of unique eQTLs (variant / eGene pairs) and unique eQTLs volving genes associated with eye disease (A) overlapping each chromatin com- artment or (B) share the same observed (n = 1) or random TAD (n = 100; see meth- ds). Boxplots represent the median and interquartile range (IQR); whiskers mark 1.5x he IQR; data beyond 1.5x the IQR are plotted as individual points.; *** indicates < 0.001 by two-sided t-test between observed and random TADs. Genome topology links target genes to AMD- and Glaucoma- associated risk variants B N/A Glaucoma A E eQTLs Overlapping Promoter Distal Overlaps eGene AMD CRE SE 1 2 Retinopathies CRE SE 10 30 50 CRE SE All 1000 2000 CRE SE Glaucoma 8 16 3 D E C A eQTL Only Loop Overlaps: AMD Non-eGene pieQTL eGene pieQTL Glaucoma 4 2 4 8 10 100 500 1000 H3K27Ac total signal CRE SE F Promoter Distal Overlaps eGene CRE SE Retinopathies All CRE SE CRE SE AMD Glaucoma F F Promoter eQTL TSS Promoter Distal eQTL SE or CRE Promoter-interacting eQTL Ret G 0 40 80 % eQTL-eGene in same TAD Random Real All Retinopathies AMD Glaucoma *** *** *** *** B G B cus 0 kb cus CAPN5 MYO7A OMP 77,100 kb 77,150 kb 77,200 kb rs113813737 rs1893759 chr11: 77.1-77.2 Mb, MYO7A locus rs11624730 CARMIL3 CPNE6 NRL PCK2 24,060 kb 24,080 kb 24,100 kb chr14: 24.0-24.1 Mb, PCK2 locus H CRE SE Non-eGene pieQTL eGene pieQTL CRE SE CRE SE CRE SE th- .5x f r- ith of nd SE pes r- involving genes associated eye disease, overlapping a CRE or SE (n = 1677 eQTLs overlapping a distal CRE, n = 744 eQTLs overlapping a promoter CRE, n = 12 glaucoma eQTLs overlapping a distal CRE, n = 5 glaucoma eQTLs overlapping a promoter CRE, n = 44 retinal disease eQTLs overlapping a distal CRE, n = 16 retinal disease eQTLs overlapping a promoter CRE, n = 2 AMD eQTLs overlapping a distal CRE; n = 763 eQTLs overlapping a distal SE, n = 121 eQTLs overlapping a promoter SE, n = 3 glau- coma eQTLs overlapping a distal SE, n = 2 glaucoma eQTLs overlapping a promoter SE, n = 34 retinal disease eQTLs overlapping a distal SE, n = 8 retinal disease eQTLs overlapping a promoter SE, n = 2 AMD eQTLs overlapping a distal SE). Boxplots represent the median and interquartile range (IQR); whiskers mark 1.5x the IQR; data beyond 1.5x the IQR are plotted as individual points. G Examples of promoters and pieQTLs associated to retinopathies (PRPH2 locus), glaucoma (MYO7A locus, top panels), AMD (ABCA1 locus, bottom left panel) and at PCK2 locus (bottom right panel). Tracks represent the chromatin loops, eQTLs variants, SEs, CREs, H3K27Ac coverage, TADs and genes. Genome topology links target genes to AMD- and Glaucoma- associated risk variants G rs414285 PRPH2 TBCC URB2 42,660 kb 42,700 kb 42,740 kb chr6: 42.6-42.7 Mb, PRPH2 locus Loops eQTLs SEs CREs H3K27Ac TADs Genes Retin Gl G CAPN5 MYO7A OMP 77,100 kb 77,150 kb 77,200 kb rs113813737 rs1893759 chr11: 77.1-77.2 Mb, MYO7A locus rs11624730 CARMIL3 CPNE6 NRL PCK2 24,060 kb 24,080 kb 24,100 kb chr14: 24.0-24.1 Mb, PCK2 locus rs2437817 ABCA1 CT70 104,800 kb 105,000 kb 105,200 kb Loops eQTLs SEs CREs H3K27Ac TADs Genes chr9:104.7-105.2 Mb, ABCA1 locus Fig. 6 | Epigenetic context of retinal eQTLs and eQTLs associated with eye disease. Proportion of unique eQTLs (variant / eGene pairs) and unique eQTLs involving genes associated with eye disease (A) overlapping each chromatin com- partment or (B) share the same observed (n = 1) or random TAD (n = 100; see meth- ods). Boxplots represent the median and interquartile range (IQR); whiskers mark 1.5x the IQR; data beyond 1.5x the IQR are plotted as individual points.; *** indicates p < 0.001 by two-sided t-test between observed and random TADs. C Schematic of eQTL annotation depending on the variant position relative to TSS. D Number of unique eQTLs and unique eQTLs involving genes associated with eye disease over- lapping with a loop that are not in contact with any TSS (eQTL only), in contact with any TSS excluding the eGene TSS (non-eGene pieQTL), or in contact with the TSS of their eGene (eGene pieQTL). E Number of unique eQTLs (variants / eGene pairs) and unique eQTLs involving eye disease genes with the variant overlapping a CRE or SE with plain colors indicating the variant position relative to the eGene TSS and stripes indicating variants overlapping their eGene. F Total H3K27Ac coverage around var- iants (±100 bp) of each unique eQTLs (variants / eGene pairs) and unique eQTLs Fig. 6 | Epigenetic context of retinal eQTLs and eQTLs associated with eye Fig. 6 | Epigenetic context of retinal eQTLs and eQTLs associated with eye disease. Proportion of unique eQTLs (variant / eGene pairs) and unique eQTLs involving genes associated with eye disease (A) overlapping each chromatin com- partment or (B) share the same observed (n = 1) or random TAD (n = 100; see meth- ods). Boxplots represent the median and interquartile range (IQR); whiskers mark 1.5x the IQR; data beyond 1.5x the IQR are plotted as individual points.; *** indicates p < 0.001 by two-sided t-test between observed and random TADs. Genome topology links target genes to AMD- and Glaucoma- associated risk variants C Schematic of QTL annotation depending on the variant position relative to TSS. D Number of nique eQTLs and unique eQTLs involving genes associated with eye disease over- pping with a loop that are not in contact with any TSS (eQTL only), in contact with ny TSS excluding the eGene TSS (non-eGene pieQTL), or in contact with the TSS of heir eGene (eGene pieQTL). E Number of unique eQTLs (variants / eGene pairs) and nique eQTLs involving eye disease genes with the variant overlapping a CRE or SE ith plain colors indicating the ariant position relati e to the eGene TSS and stripes involving genes associated eye disease, overlapping a CRE or SE (n = 1677 eQTL overlapping a distal CRE, n = 744 eQTLs overlapping a promoter CRE, n = 12 glauc eQTLs overlapping a distal CRE, n = 5 glaucoma eQTLs overlapping a promoter n = 44 retinal disease eQTLs overlapping a distal CRE, n = 16 retinal disease eQT overlapping a promoter CRE, n = 2 AMD eQTLs overlapping a distal CRE; n = 76 eQTLs overlapping a distal SE, n = 121 eQTLs overlapping a promoter SE, n = 3 g coma eQTLs overlapping a distal SE, n = 2 glaucoma eQTLs overlapping a prom SE, n = 34 retinal disease eQTLs overlapping a distal SE, n = 8 retinal disease eQT overlapping a promoter SE, n = 2 AMD eQTLs overlapping a distal SE). Boxplots represent the median and interquartile range (IQR); whiskers mark 1.5x the IQR; beyond 1.5x the IQR are plotted as individual points. G Examples of promoters pieQTLs associated to retinopathies (PRPH2 locus), glaucoma (MYO7A locus, top panels), AMD (ABCA1 locus, bottom left panel) and at PCK2 locus (bottom right pa Tracks represent the chromatin loops eQTLs ariants SEs CREs H3K27Ac co e Article https://doi.org/10.1038/s41467-022-334 https://doi.org/10.1038/s41467-022-33427-1 Article 100 1175 1099 eQTL Only Loop Overlaps: All Retinopathies AMD Non-eGene pieQTL eGene pieQTL Glaucoma D 3 24 21 4 2 4 8 1 Mb Promoter eQTL TSS Promoter Distal eQTL SE or CRE Promoter-interacting eQTL C 0 50 100 All Retinopathies AMD % of eQTLs Comp. A Comp. Genome topology links target genes to AMD- and Glaucoma- associated risk variants C Schematic of eQTL annotation depending on the variant position relative to TSS. D Number of unique eQTLs and unique eQTLs involving genes associated with eye disease over- lapping with a loop that are not in contact with any TSS (eQTL only), in contact with any TSS excluding the eGene TSS (non-eGene pieQTL), or in contact with the TSS of their eGene (eGene pieQTL). E Number of unique eQTLs (variants / eGene pairs) and unique eQTLs involving eye disease genes with the variant overlapping a CRE or SE with plain colors indicating the variant position relative to the eGene TSS and stripes indicating variants overlapping their eGene. F Total H3K27Ac coverage around var- iants (±100 bp) of each unique eQTLs (variants / eGene pairs) and unique eQTLs involving genes associated eye disease, overlapping a CRE or SE (n = 1677 eQTLs overlapping a distal CRE, n = 744 eQTLs overlapping a promoter CRE, n = 12 glaucoma eQTLs overlapping a distal CRE, n = 5 glaucoma eQTLs overlapping a promoter CRE, n = 44 retinal disease eQTLs overlapping a distal CRE, n = 16 retinal disease eQTLs overlapping a promoter CRE, n = 2 AMD eQTLs overlapping a distal CRE; n = 763 eQTLs overlapping a distal SE, n = 121 eQTLs overlapping a promoter SE, n = 3 glau- coma eQTLs overlapping a distal SE, n = 2 glaucoma eQTLs overlapping a promoter SE, n = 34 retinal disease eQTLs overlapping a distal SE, n = 8 retinal disease eQTLs overlapping a promoter SE, n = 2 AMD eQTLs overlapping a distal SE). Boxplots represent the median and interquartile range (IQR); whiskers mark 1.5x the IQR; data beyond 1.5x the IQR are plotted as individual points. G Examples of promoters and pieQTLs associated to retinopathies (PRPH2 locus), glaucoma (MYO7A locus, top panels), AMD (ABCA1 locus, bottom left panel) and at PCK2 locus (bottom right panel). Tracks represent the chromatin loops, eQTLs variants, SEs, CREs, H3K27Ac coverage, TADs and genes. https://doi.org/10.1038/s41467-022-33427-1 Article AMD GWAS lead variants 52 (1196 variants in LD) Retina SEs 1 (62) Retina Loops 4 (142) ACC Neuron Loops 0 (196) Gene body TSS 3 (136) 3 (64) 5 (118) 4 (86) 1 (57) 0 (0) 0 (162) 0 (65) Retina CREs 5 (122) A B Glaucoma GWAS lead variants 127 (12,658 variants in LD) Retina SEs 5 (221) Retina Loops 12 (493) ACC Neuron Loops 10 (2118) Gene body TSS 8 (363) 3 (157) 14 (368) 8 (180) 5 (221) 5 (221) 9 (1890) 2 (730) Retina CREs 16 (434) C D C A B D 104,000 kb 104,500 kb 105,000 kb 105,500 kb RELN ORC5 LHFPL3 PUS7 SYPL1 ATXN7L1 KMT2E RINT1 SRPK2 EFCAB10 CDHR3 rs1142 Loops Lead Variant LD Variants CTCF Insulation SE CRE Genes TADs chr7: 103.9-106.4 Mb, KMT2E/SRPK2 locus B 51,000 kb 51,500 kb 52,000 kb TFAP2D IL17A IL17F TFAP2B PKHD1 51,000 kb 51,500 kb 52,000 kb rs72904286 TFAP2D IL17A IL17F TFAP2B PKHD1 chr6:50.6-52.4 Mb, TFAP2B/PKHD1 locus D 75,000 kb 75,250 kb 75,500 kb CTRB2 CHST5 WDR59 CTRB1 TERF2IP DUXB ZNRF1 ZFP1 CHST6 TMEM231 KARS1 LDHD CFDP1 BCAR1 TMEM170A ADAT1 rs72802342 chr16: 74.9-76.0 Mb, CTRB2/CTRB1 locus Loops Lead Variant LD Variants CTCF Insulation SE CRE Genes TADs 106,500 kb 107,000 kb rs1037013 CKAP4 POLR3B RFX4 CRY1 TCP11L2 TMEM263 MTERF2 RIC8B 106,750 kb 106,250 kb chr12: 106.3-107.1 Mb, RIC8B locus chr12: 106.3-107.1 Mb, RIC8B locus chr16: 74.9-76.0 Mb, CTRB2/CTRB1 locus via chromatin loops in retina or ACC neurons, or residing in retina CREs or SEs. D Chromatin loops, lead variants, LD variants, CTCF binding, SEs, CREs, TADs, and Hi-C contact maps for two glaucoma GWAS loci. Abbreviations AMD Age-related macular degeneration, GWAS Genome-wide association study, LD Linkage dis- equilibrium, TSS Transcription start site, MAF Minor allele frequency, CTCF CCCTC-binding factor, SE Super-enhancer, TAD Topologically associating domain, CRE Cis-regulatory element. Fig. 7 | AMD and glaucoma variants are connected to target genes via retinal chromatin loops. A Count of AMD lead variants and variants in linkage dis- equilibrium (LD variants; MAF ≥1% & R2 score ≥0.7, shown in parenthesis) con- tacting genes via chromatin loops in retina or ACC neurons, or residing in retina CREs or SEs. B Chromatin loops, lead variants, LD variants, CTCF binding,SEs, CREs, TADs, and Hi-C contact maps for two AMD GWAS loci. C Count of glaucoma lead and LD variants (MAF ≥1% & R2 score ≥0.7, shown in parenthesis) contacting genes Genome topology links target genes to AMD- and Glaucoma- associated risk variants Nature Communications| (2022) 13:5827 9 9 104,000 kb 104,500 kb 105,000 kb 105,500 kb RELN ORC5 LHFPL3 PUS7 SYPL1 ATXN7L1 KMT2E RINT1 SRPK2 EFCAB10 CDHR3 rs1142 Loops Lead Variant LD Variants CTCF Insulation SE CRE Genes TADs chr7: 103.9-106.4 Mb, KMT2E/SRPK2 locus 51,000 kb 51,500 kb 52,000 kb TFAP2D IL17A IL17F TFAP2B PKHD1 51,000 kb 51,500 kb 52,000 kb rs72904286 TFAP2D IL17A IL17F TFAP2B PKHD1 chr6:50.6-52.4 Mb, TFAP2B/PKHD1 locus 75,000 kb 75,250 kb 75,500 kb CTRB2 CHST5 WDR59 CTRB1 TERF2IP DUXB ZNRF1 ZFP1 CHST6 TMEM231 KARS1 LDHD CFDP1 BCAR1 TMEM170A ADAT1 rs72802342 chr16: 74.9-76.0 Mb, CTRB2/CTRB1 locus Loops Lead Variant LD Variants CTCF Insulation SE CRE Genes TADs 106,500 kb 107,000 kb rs1037013 CKAP4 POLR3B RFX4 CRY1 TCP11L2 TMEM263 MTERF2 RIC8B 106,750 kb 106,250 kb chr12: 106.3-107.1 Mb, RIC8B locus AMD GWAS lead variants 52 (1196 variants in LD) Retina SEs 1 (62) Retina Loops 4 (142) ACC Neuron Loops 0 (196) Gene body TSS 3 (136) 3 (64) 5 (118) 4 (86) 1 (57) 0 (0) 0 (162) 0 (65) Retina CREs 5 (122) Glaucoma GWAS lead variants 127 (12,658 variants in LD) Retina SEs 5 (221) Retina Loops 12 (493) ACC Neuron Loops 10 (2118) Gene body TSS 8 (363) 3 (157) 14 (368) 8 (180) 5 (221) 5 (221) 9 (1890) 2 (730) Retina CREs 16 (434) A B C D ig. 7 | AMD and glaucoma variants are connected to target genes via retinal hromatin loops. A Count of AMD lead variants and variants in linkage dis- quilibrium (LD variants; MAF ≥1% & R2 score ≥0.7, shown in parenthesis) con- acting genes via chromatin loops in retina or ACC neurons, or residing in retina REs or SEs. B Chromatin loops, lead variants, LD variants, CTCF binding,SEs, CREs, ADs, and Hi-C contact maps for two AMD GWAS loci. C Count of glaucoma lead nd LD variants (MAF ≥1% & R2 score ≥0.7, shown in parenthesis) contacting genes via chromatin loops in retina or ACC neurons, or residing in retina CREs or SE D Chromatin loops, lead variants, LD variants, CTCF binding, SEs, CREs, TADs, Hi-C contact maps for two glaucoma GWAS loci. Abbreviations AMD Age-relat macular degeneration, GWAS Genome-wide association study, LD Linkage dis equilibrium, TSS Transcription start site, MAF Minor allele frequency, CTCF CCCTC-binding factor, SE Super-enhancer, TAD Topologically associating dom CRE Cis-regulatory element. Article https://doi.org/10.1038/s41467-022-3342 https://doi.org/10.1038/s41467-022-33427-1 Discussion We believe this could be due to differing approaches to insulation score calculation. We measure boundary insulation based on contacts crossing a TAD boundary region, as recommended by the 4D Nucleome consortium (i.e., cool- tools diamond insulation). In contrast, other study normalized this count using the contacts in adjacent regions44, leading to a bias of insulation score for adjacent regions rich in local loops (such as the SE- containing regions). We should point out that TAD boundary locali- zation varies at the single cell level45,46, therefore the insulation score at boundaries can also reflect the heterogeneity in the tissue. Thus, we propose that chromatin architecture could be more dynamic around these transcription hotspots. For example, a SE and its asso- ciated genes could be dynamically targeted to, and released from subnuclear compartments, temporally disrupting the TAD boundary in a subset of cells. This would be reflected at the population level by a lower insulation at the affected TAD boundary. In con- cordance with this hypothesis, SE at the edge of a TAD could affect the boundary to a greater extent compared to SE in the middle of a TAD, leading to a weaker insulation at edge-SE TAD boundaries, as we observe here. Adult-onset multifactorial diseases affecting retinal function are the major cause of irreversible vision impairment in humans. GWAS of Glaucoma and AMD have identified a large number of non-coding variants, and additional studies including eQTL analysis have provided further insights; yet, the causal genes and variants continue to be elusive for many associated loci. Our integrated analysis of adult human retinal genome topology with GWAS lead and LD variants has uncovered several previously unidentified genes potentially con- tributing to glaucoma and AMD. For example, we show a remarkable long-range interaction leading to identification of the target gene TFAP2B for glaucoma-associated variant rs72904286 at the TFAP2B/ PKHD1 locus. Disruption of TFAP2B expression in mouse results in a strong pathologic phenotype consistent with glaucoma51,52. Interest- ingly, this phenotype is believed to be due to defects in the eye tissues originating from the neural crest52, while we identified TFAP2B through data from the retina, originating from the neuroepithelium. It is pos- sible that this apparent discrepancy is due to a lack of tissue specificity of the regulatory region containing the variant rs72904286, which could form non-tissue specific contacts with TFAP2B. Discussion These hubs often connect genomic regions across long distances (>250 kb); e.g., contacts between the CREs of MEF2C, VEGFA and CLSTN1 with distant genes Notably at the MIR9-2 locus Most SEs we identified are associated with rod genes reflecting rod cell-dominance in human retinal samples. However, we also cap- tured signals from divergent low abundance retinal cell types. For example, relative to random regions, we observe elevated SE overlap with bipolar, cone photoreceptor, and Müller glia genes as well as increased chromatin looping between SEs and horizontal cell genes. Additionally, we noted several retinal pigment epithelial cell markers with TSS overlapping A Compartment and enriched for active reg- ulatory marks (e.g., BEST-1, MERTK, RLBP1, MITF, PMEL). A previous study of human retina identified accessible chromatin and TF binding peaks assessed by ChIP-seq at regulatory elements of both rod and non-rod genes34. In contrast, mostly rod-associated gene states were identified in mouse retina via ChromHMM analysis42, and no robust chromatin interactions detected between non-rod enhancers/pro- moters and SE via Hi-C32. As predicted, many chromatin interactions correlate with tissue-specific expression and are conserved in mouse. Retinal CREs and eQTLs having high resolution chromatin con- tacts should permit systematic analysis of relevant non-coding reg- ulating regions for missing heritability and help in addressing issues of variable penetrance in inherited retinal diseases26. Rare coding variants in over 200 genes associated with photoreceptor and/or retinal pig- ment epithelium (RPE) function can lead to vision impairment (RetNet; https://sph.uth.edu/retnet/); yet, only in few instances, non-coding or structural alterations have been associated with human retinal disease34,49. Variants in regulatory elements have been implicated in altering the effect of coding mutations on phenotypes27,50. We propose that the analysis of functionally-relevant non-coding regions in rho- dopsin, ABCA4 and other known retinopathy genes, as identified in this study, would greatly augment our understanding of Mendelian retinal diseases. p p We demonstrate that the biological function of SE target genes can be associated with SE localization in TADs as well as TAD boundary insulation. Notably, SEs themselves show interaction mostly with loci in close proximity, suggesting strong insulation at the local, sub-TAD level likely due to the enrichment for CTCF binding and to avoid ran- dom activation of nearby genes, consistent with previous studies43. Unexpectedly, we detect weaker insulation at SE-containing TAD boundaries, in contrast to a previous study showing the association of SEs with increased TAD insulation44. Discussion In contrast, mostly rod-associated gene states were identified in mouse retina via ChromHMM analysis42, and no robust chromatin interactions detected between non-rod enhancers/pro- moters and SE via Hi-C32. As predicted, many chromatin interactions correlate with tissue-specific expression and are conserved in mouse. We demonstrate that the biological function of SE target genes can be associated with SE localization in TADs as well as TAD boundary insulation. Notably, SEs themselves show interaction mostly with loci in close proximity, suggesting strong insulation at the local, sub-TAD level likely due to the enrichment for CTCF binding and to avoid ran- dom activation of nearby genes, consistent with previous studies43. Unexpectedly, we detect weaker insulation at SE-containing TAD boundaries, in contrast to a previous study showing the association of SEs with increased TAD insulation44. We believe this could be due to differing approaches to insulation score calculation. We measure boundary insulation based on contacts crossing a TAD boundary region, as recommended by the 4D Nucleome consortium (i.e., cool- tools diamond insulation). In contrast, other study normalized this count using the contacts in adjacent regions44, leading to a bias of insulation score for adjacent regions rich in local loops (such as the SE- containing regions). We should point out that TAD boundary locali- zation varies at the single cell level45,46, therefore the insulation score at boundaries can also reflect the heterogeneity in the tissue. Thus, we propose that chromatin architecture could be more dynamic around these transcription hotspots. For example, a SE and its asso- ciated genes could be dynamically targeted to, and released from subnuclear compartments, temporally disrupting the TAD boundary in a subset of cells. This would be reflected at the population level by a lower insulation at the affected TAD boundary. In con- cordance with this hypothesis, SE at the edge of a TAD could affect the boundary to a greater extent compared to SE in the middle of a TAD, leading to a weaker insulation at edge-SE TAD boundaries, as we observe here. Our integrated analysis has uncovered multi-way SE-chromatin interactions centered around hub-like genomic regions, as observed in other tissues46–48. For example, the SE overlapping FOS connects large transcriptional units across multiple TADs and may facilitate rapid stress response. Discussion enhancer interactions. Our data have a resolution of almost 3 kb, which means that significant chromatin contacts spanning over just few kilobases can be identified. We noted a non-homogeneous average resolution across the genome, with some regions requiring additional sequencing to reach this resolution whereas others exceeding this at our sequencing depth. This heterogeneity was considered when sta- tistically calling significant contacts at each genomic location. Spatial architecture of chromatin is highly dynamic and requires active control mechanisms40. The adult retina is comprised of non-dividing and highly-specialized sensory neurons and thus offers a relatively stable environment for investigating the role of 3D genome in con- trolling genetic information. Hi-C allows the exploration of 3D genome architecture by identifying chromatin contacts but can only reveal pairwise interactions. Thus, it is not possible to determine whether several regions interacting together in a Hi-C contact map coexist in each cell of the population, or whether these reflect a heterogeneous cell population each with unique pairs of interacting regions. At higher resolution, fine regulatory structures can resolve such promoter- Our deep sequencing of chromatin contacts integrated with chromatin accessibility and histone marks in human retina has pro- vided detailed information on contacts of distal regulatory elements, including SEs, with their cognate promoter regions. Integrating this regulatory 3D map with CTCF and retinal TF binding and CREs34 has Nature Communications| (2022) 13:5827 Nature Communications| (2022) 13:5827 10 https://doi.org/10.1038/s41467-022-33427-1 Article allowed us to construct a comprehensive gene regulatory network. We show that retina SEs frequently overlap with retina-enriched genes coding for key retinal TFs including NRL, CRX, OTX2, RORB and MEF2D, whereas TFs they encode bind extensively to SEs. This inter- connected, self-regulating TF network may represent a core tran- scriptional regulatory circuit for maintaining cell identity as observed in embryonic stem cells (sensu41). We have taken advantage of this regulatory architecture to delineate tissue-specific genomic regulation and identify the link between eQTL variants and eGenes via regulatory elements and/or chromatin looping. Finally, by combining our findings with AMD and Glaucoma GWAS, we have uncovered candidate causal genes contributing to these complex traits. variations could impact retinal homeostasis and disease by targeting genes over very large distance. allowed us to construct a comprehensive gene regulatory network. We show that retina SEs frequently overlap with retina-enriched genes coding for key retinal TFs including NRL, CRX, OTX2, RORB and MEF2D, whereas TFs they encode bind extensively to SEs. Discussion This inter- connected, self-regulating TF network may represent a core tran- scriptional regulatory circuit for maintaining cell identity as observed in embryonic stem cells (sensu41). We have taken advantage of this regulatory architecture to delineate tissue-specific genomic regulation and identify the link between eQTL variants and eGenes via regulatory elements and/or chromatin looping. Finally, by combining our findings with AMD and Glaucoma GWAS, we have uncovered candidate causal genes contributing to these complex traits. Long-range regulation is facilitated by the physical interaction between regulatory regions and their target genes, providing a prob- able mechanism for eQTLs to influence expression of eGenes located far from their variants. By integrating retina eQTLs38 with chromatin looping, SEs, and CREs, we uncovered multiple variants lying in reg- ulatory regions interacting with their target eGene including several pieQTLs, i.e., variants directly contacting the promoter of their eGene. Remarkably, we have identified multiple pieQTLs involving genes associated with retinal neurodegeneration illustrating the value of unbiased genetic association studies to identify genes linked to retinal diseases. Examining the chromatin state at these eQTLs can help prioritize specific variants for further investigation. For example, the variant associated with PCK2 is lying in a large CRE enriched for active histone marks. Despite being almost 100 kb away from PCK2, it is in direct contact with its promoter through a chromatin loop. Thus, dif- ferent alleles at this locus could impact PCK2 regulation affecting CRE efficiency, TF binding, and/or chromatin loop formation or stability. elements and/or chromatin looping. Finally, by combining our findings with AMD and Glaucoma GWAS, we have uncovered candidate causal genes contributing to these complex traits. Most SEs we identified are associated with rod genes reflecting rod cell-dominance in human retinal samples. However, we also cap- tured signals from divergent low abundance retinal cell types. For example, relative to random regions, we observe elevated SE overlap with bipolar, cone photoreceptor, and Müller glia genes as well as increased chromatin looping between SEs and horizontal cell genes. Additionally, we noted several retinal pigment epithelial cell markers with TSS overlapping A Compartment and enriched for active reg- ulatory marks (e.g., BEST-1, MERTK, RLBP1, MITF, PMEL). A previous study of human retina identified accessible chromatin and TF binding peaks assessed by ChIP-seq at regulatory elements of both rod and non-rod genes34. Discussion Indeed, we demonstrate a similar number of chromatin interactions among glaucoma associated eQTLs and risk variants in both retina and in neurons, demonstrating weak tissue specificity for this eye disease. In contrast, AMD-associated eQTLs and risk variants reveal a strong enrichment for chromatin looping in the retina compared to neurons, demonstrating the value of examining genomic architecture of disease variants in the affected tissue. Our integrated analysis has uncovered multi-way SE-chromatin interactions centered around hub-like genomic regions, as observed in other tissues46–48. For example, the SE overlapping FOS connects large transcriptional units across multiple TADs and may facilitate rapid stress response. These hubs often connect genomic regions across long distances (>250 kb); e.g., contacts between the CREs of MEF2C, VEGFA and CLSTN1 with distant genes. Notably, at the MIR9-2 locus, MEF2C interacts with the gene CETN3 which is associated with retinitis pigmentosa and located over 1 Mb away. This suggests that genetic Our study has also led to identification of candidate causal genes for AMD. For example, we establish CFDP1 as a candidate gene involved in AMD at the CTRB2/CTRB1 locus. While the lead variant found at this locus (rs72802342) was previously associated to the target gene BCAR153, we show association of filtered variants in LD with rs72802342 to the gene coding for CFDP1. Indeed, the LD region at this Nature Communications| (2022) 13:5827 11 https://doi.org/10.1038/s41467-022-33427-1 Article using a Mr. Frosty container (Invitrogen, CA, USA). CUT&RUN was performed as previously described57 using 200,000–300,000 cells per experiment. Briefly, cells were bound to activated concavalin A beads for 7 min at room temperature. Antibodies against H3K9me3 (Rabbit, cat.no. ab8898, Abcam, Cambridge, UK), H3K4me3 (Rabbit, cat.no. ab8580, Abcam, Cambridge, UK) and control IgG (Rabbit, cat.no. 011- 000-002, Jackson ImmunoResearch Laboratories, PA, USA) were used at a concentration of 1:100 in 100 µl overnight at 4 °C. pA-MNase conjugated to protein A (generous gift of Dr. Steven Henikoff, Howard Hughes Medical Institute, WA, USA) was used at a concentration of 700 ng/ml for 1 hr at 4 oC and activated with calcium chloride for 30 mins at 0 °C. Released DNA fragments were purified using QIAquick PCR Purification Kit (QIAGEN, Hilden, Germany). Libraries were pre- pared with SMARTer® ThruPLEX® DNA-Seq Kit (Takara Bio USA, Inc, CA, USA) and amplified with 15 PCR cycles (60 °C extension). Discussion Pair-end sequencing was performed with read length of 50 base pairs using the HiSeq 2500 platform (Illumina, CA, USA). lead variant is overlapping a retinal SE (chr16:75233500-75267000), which interacts with CFDP1 through chromatin looping. We suggest that this variant could alter the expression of CFDP1 by disrupting the SE structure and the interactions it facilitates. This hypothesis is strongly supported by the presence of a variant (rs11641532) in this LD region previously linked to the expression of CFDP1 in TWAS analysis23,38. Conservation of this genomic region from zebrafish to mammals54 further underscores the importance of regulatory ele- ments contained within. Notably, zebrafish mutants of Cfdp1 exhibit a loss of Neurod1 positive cells in the retina55. Altogether, this places regulation of CFDP1 expression in the retina as a strong candidate for AMD risk. This example demonstrates how the integration of reg- ulatory elements to 3D chromatin interactions can help clarify the biological impact of variants associated with retinal, and more broadly, human diseases. Notably, one limitation of the Hi-C approach is that the physical interaction between candidate enhancers and promoters does not directly demonstrate a functional relationship with respect to gene regulation. Additional studies are necessary to validate the sig- nificance of chromatin interaction on retina-specific gene expression. Hi-C data processing p g Hi-C analysis was performed with HiCUP v0.8.059 using Arima- specific in silico digested hg38 genome for the retina and HCT116 samples, and MboI in silico digested hg38 genome for the published neuron and GM12878 samples2. Filtered bam files pro- duced by HiCUP v0.8.059 were converted to.hic files60 and to HOMER61,62 tag directories. Retina Hi-C resolution was estimated at 3.06 kb using HiCRes63. Reproducibility between samples as well as correlation with Hi-C from other tissues were assessed using HiCRep v1.0.064: by computing the average SCC for chromosomes 1 to 22. Compartments were called with Homer v4.161,62 using 100 kb sliding windows with a step of 50 kb (using options superRes and res, respectively). Compartment correlation between different tissues was computed using R. Loops were called using FitHiC v2.0.765 on the merged Hi-C datasets, using 5 kb resolution and an FDR threshold of 0.01. TADs calling was performed on the merged samples with domaincaller66, using raw contact maps of 10 kb bins. Insulation scores were computed using the diamond insulation tool from cooltools v0.4.0, using 100 kb windows with 5 kb bins. Assay for Transposase-Accessible Chromatin using sequencing (ATAC-seq) In summary, we have generated a significant resource for the human retina, by integrating high resolution Hi-C data with epigenetic profiles and CREs, thereby facilitating investigations of genomic reg- ulation, identification of missing heritability in retinopathies, and candidate causal genes and variants for common blinding diseases including AMD and glaucoma. Our studies thus provide a framework for connecting regulatory variants with retinal disease phenotypes and may assist in design of targeted translational paradigms by modulating genomic regulation. ( q) ATAC-seq was performed using fresh dissociated cells from five retinas (2 females and 3 males of 65–77 years age at the time of death). Tagmentation and library preparation were carried out as described58 using Nextera DNA Library Prep kit (FC-121-1030, Illu- mina, San Diego, CA). Dissociated cells were quantified using a hemocytometer, and the nuclear fraction of 50,000 cells was incu- bated with tagmentation reaction mix (5 µl Tn5, 25 µl 2x tagmentation buffer, 20 µl nuclease-free water) in a thermomix with 600 rpm agi- tation. The DNA was purified by “MinElute PCR Purification” kit (Qiagen, 28004) followed by a two-sided size selection using a 0.5 and 1.5 ratio of SPRIselect reagent (Beckman Coulter B233181). All of the DNA was used to prepare the libraries, which were sequenced pair-end using the HiSeq 2500 platform (Illumina, CA, USA) at a read length of 50 base pairs. Hi-C experiment Freshly dissected human retina tissue (from 3 male and 1 female of 75–77 years age at the time of death) was crosslinked with 1% for- maldehyde in PBS for 10 min, quenched with 125 mM glycine for 5 min and frozen until use for Hi-C experiments. Before processing for Hi-C, samples were crosslinked again in 2% formaldehyde for 10 min, then quenched with 125 mM glycine 5 min at room temperature. Hi-C was performed on isolated nuclei using Arima-Hi-C kit (Arima Genomics, CA, USA) and Hyper Prep DNA-seq library prep kit (KK8502; Kapa Biosciences, MA, USA), following the manufacturers’ instructions. For HCT116 cell line (ATCC, VA, USA), 7 × 106 cells were crosslinked with 2% formaldehyde for 10 min, quenched for 5 min with stop solution I, lysed, and processed for Hi-C using ARIMA-Hi-C kit. All libraries were sequenced on HiSeq 2500 platform (Illumina, CA, USA) at a read length of 101 to 126 base pairs with a depth of approximately 300 million read pairs per sample for retina and 50 million read pairs for HCT116. Retina tissues Five postmortem human donor eyes (from 2 females and 3 males of 65–77 years age at the time of death) were procured from The National Disease Research Interchange (Philadelphia, PA) (protocol DSWAS 001). Autopsy material from unidentified deceased persons is exclu- ded from review by Institutional Review Board and does not require an Office of Human Subjects Research Protections (OHSRP) determina- tion per 45 CFR 46 and NIH policy (OHSRP ID#: 18-NEI-00619). Eyes were enucleated within 14 h of death and stored in Dulbecco’s Mod- ified Eagle Medium (DMEM) (Thermofisher, Waltham, MA) supple- mented with antibiotics at 4 °C until dissection. Retinas were dissected and divided into four regions (dorsal, ventral, nasal and temporal) for further processing. Dorsal regions were used in further experiments. SE characterization Basic SE characteristics were computed using R. Correlation between SE count and chromosome size or number of retina-expressed genes is measured as Pearson’s r2 computed with ggpubr v0.4.0. To identify statistically significant enrichment in SE characteristics, 100 random region datasets have been generated using bedtools random v2.29.275 with a length corresponding to the median length of SE and the number of regions per dataset equal to the number of SE. SEs and random regions have been overlapped with the Hi-C loops using bedtools PairToBed v2.29.275. Statistics of the overlaps were computed using R. SEs and random regions were overlapped with all expressed genes as well as tissue- and cell type-enriched genes from the Human Protein Atlas73 using bedtools intersect v2.29.275. Genomic regions in contact with a SE or random region through chromatin were also overlapped with tissue- and cell type-enriched genes, CREs, and het- erochromatin regions (from chromHMM33 annotated states) using bedtools intersect v2.29.275. Characterization of retinal eQTLs The chromatin annotation used for this project is an integration of public (H3K4me2, H3K27Ac) and lab-produced (H3K4me3, H3k9me3) chromatin histone marks with our best chromatin accessibility dataset (see ATAC-seq processing section). This integration was performed by transforming the read coverage to 500 bp signal and computing chromatin states using the ChromHMM33 tool v1.19. Models defining between 5 and 20 chromatin states were tested. For each model, we calculated the mean correlation between each chromatin state and the most similar chromatin state in each model with additional states. After 10 chromatin states, this correlation plateaued indicating that additional chromatin states provide minimal information. For each state of the 10-states model, the average coverage for the chromatin marks and accessibility were computed using HOMER61,62 and the chromatin signatures for each segment were used to manually infer a biological annotation of each state. The average distributions of each state around the expressed and non-expressed genes were computed as a quality control using HOMER61,62, with our previously published list of expressed genes in human retina38 and all the other genes from HOMER TSS list as non-expressed genes. The 14,859 eQTLs identified previously38 were classified based on the location of the variants relative to the canonical TSS of the associated eGene from Ensembl 102. Expression quantitative trait loci variants located within ±2.5 kb of the eGene TSS were identified as promoter eQTLs while those located >2.5 kb from the eGene were identified as distal eQTLs. One hundred sets of random TADs of the same count and mean length as the real TADs were generated using regioneR v1.26.179. For each set of TADs, real and random, we determined what propor- tion of eQTL variants resided within the same TAD as their associated eGene TSS. Next, eQTL variants which overlap a chromatin loop foot were classified based on the location contacted by opposite loop foot; variants in contact with their eGene promoter were identified as eGene pieQTLs, variants in contact with a promoter other than the eGene as non-eGene pieQTLs, and variants not in contact with any promoter as eQTL only. Finally, eQTLs were checked for overlap with CREs and SEs then subsequently checked if those regions overlapped the associated eGene. All overlaps were performed using GenomicRanges v1.4280 in R. Identification of linkage disequilibrium (LD) variants for AMD and Glaucoma GWAS loci Tissue- and cell type-enriched genes Tissue- and cell type-enriched genes Tissue-enriched genes and cell type-enriched gene lists used in Figs. 2C, 3E and Supplementary Fig. 4 were downloaded from the Human Protein Atlas73. Article the aligned read pairs by computing the normalized enrichment at TSS using HOMER61,62, and by computing the fragment size. Retina 1 was chosen as the best dataset from this QC and used as input for ChromHMM33 annotation v1.19 (see Chromatin annotation section). Cut&Run processing Cut&Run datasets from one retina were processed by trimming the adaptors using cutadapt v3.067 and mapping locally with bowtie2 v2.3.5.168, allowing dovetail on a chimeric genome (Human hg38, S. cerevisiae S288C; E. coli ASM584v2). No internal normalization was performed in these datasets since the proportion of read mapping on the yeast or on the bacterial genome was too low. Reads mapping on the human genome were then extracted, filtered for quality, dupli- cates, and blacklisted regions (ENCODE dataset ENCFF419RSJ) using samtools v1.969. Quality of the experiment was visualized on IGV v2.11.970 after conversion to bigwig using deepTools71 (Supplemen- tary Fig. 6). ChIP-seq data processing Public ChIP-seq datasets from human retina (GSE13731134) were rea- nalyzed using the same parameters as for Cut&Run, i.e., locally map- ping the reads and allowing dovetail. Mapped reads were filtered for quality, duplicates, and blacklisted regions (ENCODE dataset ENCFF419RSJ) using samtools v1.969. To select only one dataset per chromatin mark, autocorrelation was assessed using HOMER61,62 and datasets with the highest same and different strand enrichments and the ratio same / different strand fold enrichment closer to one were selected for further analysis. Global quality was visually assessed using IGV v2.11.970 on mapped reads converted to bigwig using deepTools v3.3.071 (Supplementary Fig. 6). Chromatin binding peaks of CREB, CRX, CTCF, MEF2D, NRL, Otx1/2 and RORB were identified using MACS2 v2.2.7.172. To identify accessible motifs, accessible chromatin loci were identified using MACS2 v2.2.7.172 on each dataset and the average coverage at ATAC peaks has been computed as a quality control using HOMER61,62. Footprints have been extracted from each list of accessible loci using rgt-HINT v0.13.176. Accessible footprint loci less than 20 bp apart have been merged for all ATAC-seq experiments. Loci found in at least 3 retinas have been kept for motif finding. To control the quality of accessible footprint discovery, we identified binding motifs present within these footprints at an FDR < 0.05 using FIMO77 with the motif database HOCOMOCOv1178. Then, the read coverage from CRX, NRL, CTCF and Input ChIP-seq around each CRX, NRL or CTCF accessible motifs were computed using HOMER and plotted using R. Enriched TF binding motifs from Fig. 3H were computed by run- ning AME from MEME suite v5.4.1 on accessible footprints within SE and containing CRX and NRL binding sites. SE-overlapping footprints without NRL or CRX binding sites were used as background. Finally, motifs from expressed TFs were filtered to those expressed in a pre- vious retina transcriptome study (GSE115828). ATAC-seq data processing ATAC seq data processing ATAC-seq from five human retinas was analyzed by trimming the reads for Nextera transposase sequence and reducing their size to maximum 25 bp using cutadapt v3.067 and FASTX toolkit (FASTX-Toolkit v0.0.14, RRID:SCR_005534). Trimmed reads were mapped on hg38 using bow- tie2 v2.3.5.168 and filtered for quality, duplicates and blacklisted regions (ENCODE dataset ENCFF419RSJ) using samtools v1.969. Two sets of aligned read pairs were produced: TN5-shifted and non-shifted, to use with general tools (TN5-shifted) or specialized tools already including a TN5 shifting step (non-shifted). Quality controls were performed on Cleavage under targets and release using nuclease (CUT&RUN) Peripheral retina sample (from 1 female of 75 years age at the time of death) was dissociated using papain as previously described56, cryo- preserved in HBSS solution containing 10% DMSO and slowly frozen Nature Communications| (2022) 13:5827 12 https://doi.org/10.1038/s41467-022-33427-1 Article Reporting summary 17. Finn, E. H. et al. Extensive heterogeneity and intrinsic variation in spatial genome organization. Cell 176, 1502–1515 e10 (2019). Further information on research design is available in the Nature Research Reporting Summary linked to this article. 18. Hnisz, D. et al. Super-enhancers in the control of cell identity and disease. Cell 155, 934–947 (2013). Figure plots 14. Paulsen, J. et al. Long-range interactions between topologically associating domains shape the four-dimensional genome during differentiation. Nat. Genet. 51, 835–843 (2019). Contact maps were plotted using the Washington University Epigen- ome browser82 or using HOMER61,62 and R v3.6 and v4.0.3. Chromatin profiles and chromatin loops were plotted using IGV v2.11.970. Graphs were plotted using R v3.6 and v4.0.3, ggplot2 v3.3.5 and dplyr v1.07 and ComplexHeatmap v2.7.10.9002. 15. Batut, P. J. et al. Genome organization controls transcriptional dynamics during development. Science 375, 566–570 (2022). 16. Dixon, J. R. et al. Chromatin architecture reorganization during stem cell differentiation. Nature 518, 331–336 (2015). Data availability 19. Grosveld, F., van Staalduinen, J. & Stadhouders, R. Transcriptional regulation by (super)enhancers: from discovery to mechanisms. Annu. Rev. Genomics Hum. Genet. 22, 127–146 (2021). y The data that support this study are available from the corresponding author upon reasonable request. Datasets produced in this study are accessible in GEO under the accession numbers: GSE202471 (Hi-C), GSE202472 (ATAC-seq), GSE202473 (Cut&Run) and GSE202474 (full series). These data can be explored using our user-friendly application on computer, tablet, or smartphone on http://grn.nei.nih.gov. hg38 genome was used for alignment. Gene expression data are from our previous study, under the accession GSE11582838. The public ChIP-seq raw data used in this study are accessible under the following SRA numbers34: SRR10172858 (H3K27Ac), SRR10172898 (H3K4me2), SRR10172903 (CRX), SRR10172897 (NRL), SRR10172909 (CTCF), SRR10172910 (MEF2D), SRR10172908 (RORB), SRR10172914 (CREB), SRR10172882 (OTX1 / OTX2), SRR10172850 (Input). Public Hi-C data are accessible under the following accession numbers: GSE135465 (Mouse retina32), Synapse syn12978758 and syn12978762 (Purified neurons31) and SRR1658572 (GM128782). 20. Whyte, W. A. et al. Master transcription factors and mediator establish super-enhancers at key cell identity genes. Cell 153, 307–319 (2013). 21. Genomes Project, C. et al. A global reference for human genetic variation. Nature 526, 68–74 (2015). 22. Bergstrom, A. et al. Insights into human genetic variation and population history from 929 diverse genomes. Science 367 eaay5012 (2020). 23. Fritsche, L. G. et al. A large genome-wide association study of age- related macular degeneration highlights contributions of rare and common variants. Nat. Genet. 48, 134–143 (2016). 24. Gharahkhani, P. et al. Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries. Nat. Commun. 12, 1258 (2021). 25. Tam, V. et al. Benefits and limitations of genome-wide association studies. Nat. Rev. Genet. 20, 467–484 (2019). Identification of AMD and Glaucoma GWAS loci target genes Identification of AMD and Glaucoma GWAS loci target genes The closest target genes overlapping with loops, CRE, SE, 52 AMD lead variants, 1,196 filtered AMD LD variants, 127 glaucoma lead variants and 12,658 filtered glaucoma LD variants were obtained using the closestBed command from bedtools v2.29.275. Gene and TSS hg38 coordinates from Ensembl version 102 were used to overlap with the coordinates of the 52 AMD lead variants, 1,196 filtered AMD LD var- iants, 127 glaucoma lead variants and 12,658 filtered glaucoma LD variants. For a loop target gene, one foot of the loop overlaps the AMD/ glaucoma GWAS lead variants or filtered AMD/glaucoma LD variants, and the second foot of the loop overlaps the gene body or TSS of a gene. CRE and SE target genes were defined by both the AMD/Glau- coma GWAS lead variant (or filtered AMD/glaucoma LD variant) and the gene body (or TSS of a gene) overlapping the same CRE. 9. Robson, M. I., Ringel, A. R. & Mundlos, S. Regulatory landscaping: how enhancer-promoter communication is sculpted in 3D. Mol. Cell 74, 1110–1122 (2019). 10. Marchal, C., Sima, J. & Gilbert, D. M. Control of DNA replication timing in the 3D genome. Nat.Rev. Mol. Cell Biol. 20, 721–737 (2019). 11. van Steensel, B. & Furlong, E. E. M. The role of transcription in shaping the spatial organization of the genome. Nat. Rev. Mol. Cell Biol. 20, 327–337 (2019). 12. Janssen, S. M. & Lorincz, M. C. Interplay between chromatin marks in development and disease. Nat Rev Genet 23 137–153 (2021). 13. Gu H, H. H., et al. Fine-mapping of nuclear compartments using ultra-deep Hi-C shows that active promoter and enhancer elements localize in the active A compartment even when adjacent sequen- ces do not. bioRxiv (2021). CREs elements and SEs identification Fifty-two AMD associated variants distributed across 34 loci and 127 glaucoma associated variants and loci were considered for the analysis23,24. We calculated linkage disequilibrium (LD) for 52 AMD lead genetic variants and for 127 glaucoma lead variants within 1 MB using LDlink v5.1, among individuals with Europe ancestry from 1000 Gen- omes Project data21,81. Using hg38 coordinates, we identified 65,625 Chromatin states enriched for active histone marks identified by ChromHMM v1.19 were merged to generate a set of regions called here CREs. This list of CREs was integrated with the H3K27Ac ChIP-seq coverage and the corresponding input coverage to identify SE using the ROSE algorithm20,74. Nature Communications| (2022) 13:5827 13 Article https://doi.org/10.1038/s41467-022-33427-1 AMD variants and 188,465 glaucoma variants in LD; of these, 1,196 filtered AMD variants and 12,658 filtered glaucoma variants in LD with MAF ≥1% and r2 ≥0.7 were selected for further analysis. AMD variants and 188,465 glaucoma variants in LD; of these, 1,196 filtered AMD variants and 12,658 filtered glaucoma variants in LD with MAF ≥1% and r2 ≥0.7 were selected for further analysis. 7. Hnisz, D., Day, D. S. & Young, R. A. Insulated Neighborhoods: structural and functional units of mammalian gene control. Cell 167, 1188–1200 (2016). 8. 8. Rowley, M. J. & Corces, V. G. Organizational principles of 3D gen- ome architecture. Nat. Rev. Genet. 19, 789–800 (2018). References Chromatin-state discovery and genome anno- tation with ChromHMM. Nat. Protoc. 12, 2478–2492 (2017). 58. Buenrostro, J. D., Wu, B., Chang, H. Y. & Greenleaf, W. J. ATAC-seq: a method for assaying chromatin accessibility genome-wide. Curr. Protoc. Mol. Biol. 109, 21 29 1–21 29 9 (2015). 34. Cherry, T. J. et al. Mapping the cis-regulatory architecture of the human retina reveals noncoding genetic variation in disease. Proc. Natl Acad. Sci. USA 117, 9001–9012 (2020). 59. Wingett, S. et al. HiCUP: pipeline for mapping and processing Hi-C data. F1000Res 4, 1310 (2015). 35. Huang, J. et al. Dissecting super-enhancer hierarchy based on chromatin interactions. Nat. Commun. 9, 943 (2018). 60. Durand, N. C. et al. Juicer provides a one-click system for analyzing loop-resolution Hi-C experiments. Cell Syst. 3, 95–98 (2016). 36. Thibodeau, A., Marquez, E. J., Shin, D. G., Vera-Licona, P. & Ucar, D. Chromatin interaction networks revealed unique connectivity pat- terns of broad H3K4me3 domains and super enhancers in 3D chromatin. Sci. Rep. 7, 14466 (2017). 61. Heinz, S. et al. Simple combinations of lineage-determining tran- scription factors prime cis-regulatory elements required for mac- rophage and B cell identities. Mol. Cell 38, 576–589 (2010). 37. Coolen, M., Katz, S. & Bally-Cuif, L. miR-9: a versatile regulator of neurogenesis. Front. Cell Neurosci. 7, 220 (2013). 62. Heinz, S. et al. Transcription elongation can affect genome 3D structure. Cell 174, 1522–1536 e22 (2018). 38. Ratnapriya, R. et al. Retinal transcriptome and eQTL analyses identify genes associated with age-related macular degeneration. Nat. Genet. 51, 606–610 (2019). 63. Marchal, C., Singh, N., Corso-Diaz, X. & Swaroop, A. HiCRes: a computational method to estimate and predict the genomic reso- lution of Hi-C libraries. Nucleic Acids Res. 50, e35 (2022). 39. Chandra, V. et al. Promoter-interacting expression quantitative trait loci are enriched for functional genetic variants. Nat. Genet. 53, 110–119 (2021). 64. Yang, T. et al. HiCRep: assessing the reproducibility of Hi-C data using a stratum-adjusted correlation coefficient. Genome Res. 27, 1939–1949 (2017). 40. Dekker, J. & Mirny, L. The 3D genome as moderator of chromosomal communication. Cell 164, 1110–1121 (2016). 6 65. Ay, F., Bailey, T. L. & Noble, W. S. Statistical confidence estimation for Hi-C data reveals regulatory chromatin contacts. Genome Res. 24, 999–1011 (2014). 41. Saint-Andre, V. et al. Models of human core transcriptional reg- ulatory circuitries. Genome Res. 26, 385–396 (2016). 66. Dixon, J. R. et al. References 26. Hanany, M., Rivolta, C. & Sharon, D. Worldwide carrier frequency and genetic prevalence of autosomal recessive inherited retinal diseases. Proc. Natl Acad. Sci. USA 117, 2710–2716 (2020). 1. Lieberman-Aiden, E. et al. Comprehensive mapping of long-range interactions reveals folding principles of the human genome. Sci- ence 326, 289–293 (2009). 2. Rao, S. S. et al. A 3D map of the human genome at kilobase reso- lution reveals principles of chromatin looping. Cell 159, 1665–1680 (2014). 27. Castel, S. E. et al. Modified penetrance of coding variants by cis- regulatory variation contributes to disease risk. Nat. Genet. 50, 1327–1334 (2018). 28. Cooper, D. N., Krawczak, M., Polychronakos, C., Tyler-Smith, C. & Kehrer-Sawatzki, H. Where genotype is not predictive of phenotype: towards an understanding of the molecular basis of reduced penetrance in human inherited disease. Hum. Genet. 132, 1077–1130 (2013). 3. Boija, A. et al. Transcription factors activate genes through the phase-separation capacity of their activation domains. Cell 175, 1842–1855 e16 (2018). 4. Furlong, E. E. M. & Levine, M. Developmental enhancers and chro- mosome topology. Science 361, 1341–1345 (2018). 5. Cramer, P. Organization and regulation of gene transcription. Nat- ure 573, 45–54 (2019). 29. Maroilley, T. & Tarailo-Graovac, M. Uncovering missing heritability in rare diseases. Genes 10, 275 (2019). 6. Schoenfelder, S. & Fraser, P. Long-range enhancer-promoter con- tacts in gene expression control. Nat. Rev. Genet. 20, 437–455 (2019). 30. Cheung, V. G. & Spielman, R. S. Genetics of human gene expres- sion: mapping DNA variants that influence gene expression. Nat. Rev. Genet. 10, 595–604 (2009). Nature Communications| (2022) 13:5827 14 Article https://doi.org/10.1038/s41467-022-33427-1 55. Itoh, T. et al. Cfdp1 controls the cell cycle and neural differentiation in the zebrafish cerebellum and retina. Dev. Dyn. 250, 1618–1633 (2021). 55. Itoh, T. et al. Cfdp1 controls the cell cycle and neural differentiation in the zebrafish cerebellum and retina. Dev. Dyn. 250, 1618–1633 (2021). 31. Espeso-Gil, S.et al. A chromosomal connectome for psychiatric and metabolic risk variants in adult dopaminergic neurons. Genome Med. 12, 19 (2020). 56. Fadl, B. R. et al. An optimized protocol for retina single-cell RNA sequencing. Mol. Vis. 26, 705–717 (2020). 32. Norrie, J. L. et al. Nucleome dynamics during retinal development. Neuron 104, 512–528 e11 (2019). 57. Skene, P. J. & Henikoff, S. An efficient targeted nuclease strategy for high-resolution mapping of DNA binding sites. Elife 6, e21856 (2017). 33. Ernst, J. & Kellis, M. References Topological domains in mammalian genomes identified by analysis of chromatin interactions. Nature 485, 376–380 (2012). 42. Aldiri, I. et al. The dynamic epigenetic landscape of the retina during development, reprogramming, and tumorigenesis. Neuron 94, 550–568 e10 (2017). 67. Martin, M. V. Cutadapt removes adapter sequences from high- throughput sequencing reads. EMBnet. J. 17, 3 (2011). 43. Dowen, J. M. et al. Control of cell identity genes occurs in insulated neighborhoods in mammalian chromosomes. Cell 159, 374–387 (2014). 68. Langmead, B. & Salzberg, S. L. Fast gapped-read alignment with Bowtie 2. Nat. Methods 9, 357–359 (2012). 69. Li, H. et al. The Sequence Alignment/Map format and SAMtools. Bioinformatics 25, 2078–2079 (2009). 44. Gong, Y. et al. Stratification of TAD boundaries reveals preferential insulation of super-enhancers by strong boundaries. Nat. Commun. 9, 542 (2018). 70. Robinson, J. T., Thorvaldsdottir, H., Wenger, A. M., Zehir, A. & Mesirov, J. P. Variant review with the integrative genomics viewer. Cancer Res. 77, e31–e34 (2017). 45. Nagano, T. et al. Cell-cycle dynamics of chromosomal organization at single-cell resolution. Nature 547, 61–67 (2017). 71. Ramirez, F., Dundar, F., Diehl, S., Gruning, B. A. & Manke, T. deep- Tools: a flexible platform for exploring deep-sequencing data. Nucleic Acids Res. 42, W187–W191 (2014). 46. Bintu, B. et al. Super-resolution chromatin tracing reveals domains and cooperative interactions in single cells. Science 362, eaau1783 (2018). 72. Zhang, Y. et al. Model-based analysis of ChIP-Seq (MACS). Genome Biol. 9, R137 (2008). 47. Quinodoz, S. A. et al. Higher-order inter-chromosomal hubs shape 3D genome organization in the nucleus. Cell 174, 744–757 e24 (2018). 73. Uhlen, M. et al. A pathology atlas of the human cancer tran- scriptome. Science 357, eaan2507 (2017). 48. Beagrie, R. A. et al. Complex multi-enhancer contacts captured by genome architecture mapping. Nature 543, 519–524 (2017). 74. Loven, J. et al. Selective inhibition of tumor oncogenes by disrup- tion of super-enhancers. Cell 153, 320–334 (2013). 49. Ghiasvand, N. M. et al. Deletion of a remote enhancer near ATOH7 disrupts retinal neurogenesis, causing NCRNA disease. Nat. Neu- rosci. 14, 578–586 (2011). p , ( ) 75. Quinlan, A. R. BEDTools: the swiss-army tool for genome feature analysis. Curr. Protoc. Bioinforma. 47, 11 12 1–11 1234 (2014). 76. Li, Z. et al. Identification of transcription factor binding sites using ATAC-seq. Genome Biol. 20, 45 (2019). 75. Quinlan, A. R. BEDTools: the swiss-army tool for genome feature analysis. Curr. Protoc. Bioinforma. References 47, 11 12 1–11 1234 (2014). 50. Kim-Hellmuth, S. et al. Cell type-specific genetic regulation of gene expression across human tissues. Science 369 eaaz8528 (2020). 76. Li, Z. et al. Identification of transcription factor binding sites using ATAC-seq. Genome Biol. 20, 45 (2019). 77. Grant, C. E., Bailey, T. L. & Noble, W. S. FIMO: scanning for occur- rences of a given motif. Bioinformatics 27, 1017–1018 (2011). 51. Barzago, M. M. et al. Generation of a new mouse model of glaucoma characterized by reduced expression of the AP-2beta and AP-2delta proteins. Sci. Rep. 7, 11140 (2017). 78. Kulakovskiy, I. V. et al. HOCOMOCO: towards a complete collection of transcription factor binding models for human and mouse via large-scale ChIP-Seq analysis. Nucleic Acids Res. 46, D252–D259 (2018). 52. Martino, V. B. et al. Conditional deletion of AP-2beta in mouse cra- nial neural crest results in anterior segment dysgenesis and early- onset glaucoma. Dis. Model. Mech. 9, 849–861 (2016). 53. Orozco, L. D. et al. Integration of eQTL and a single-cell atlas in the human eye identifies causal genes for age-related macular degeneration. Cell Rep. 30, 1246–1259 e6 (2020). 79. Gel, B. et al. regioneR: an R/Bioconductor package for the asso- ciation analysis of genomic regions based on permutation tests. Bioinformatics 32, 289–291 (2016). 54. Messina, G. et al. The Bucentaur (BCNT) protein family: a long- neglected class of essential proteins required for chromatin/chro- mosome organization and function. Chromosoma 124, 153–162 (2015). 80. Lawrence, M. et al. Software for computing and annotating geno- mic ranges. PLoS Comput. Biol. 9, e1003118 (2013). 81. Machiela, M. J. & Chanock, S. J. LDlink: a web-based application for exploring population-specific haplotype structure and linking Nature Communications| (2022) 13:5827 15 Article https://doi.org/10.1038/s41467-022-33427-1 correlated alleles of possible functional variants. Bioinformatics 31, 3555–3557 (2015). Correspondence and requests for materials should be addressed to Anand Swaroop. Correspondence and requests for materials should be addressed to Anand Swaroop. 82. Li, D., Hsu, S., Purushotham, D., Sears, R. L. & Wang, T. WashU epigenome browser update 2019. Nucleic Acids Res. 47, W158–W165 (2019). Peer review information Nature Communications thanks the other anonymous reviewer(s) for their contribution to the peer review of this work. Peer review reports are available. Reprints and permission information is available at http://www.nature.com/reprints We are grateful to Freekje van Asten and Benjamin Fadl for help in dis- section of retinal tissue, Linn Gieser for assistance with next generation sequencing, and Matthew Brooks, Laura Campello Blasco, Kamil Kruc- zek, Anupam Mondal and Zepeng Qu for helpful discussions. This work was supported by Intramural Research Program of the National Eye Institute (ZIAEY000450 and ZIAEY000546) and utilized the high- performance computational capabilities of the Biowulf Linux cluster at NIH (http://biowulf.nih.gov). Publisher’s note Springer Nature remains neutral with regard to jur- isdictional claims in published maps and institutional affiliations. Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/ licenses/by/4.0/. Nature Communications| (2022) 13:5827 Author contributions Overall Conceptualization, C.M., N.S., X.C.D., and A.S.; Experimental work, N.S., C.J., and X.C.D.; Data analysis, C.M., Z.B., and J.A.; writing original draft, C.M., N.S., Z.B., J.A., X.C.D., and A.S.; Editing, all authors; Funding Acquisition, Supervision, and Project Administration, A.S. Competing interests The authors declare no competing interests. Additional information Supplementary information The online version contains supplementary material available at https://doi.org/10.1038/s41467-022-33427-1. Competing interests The authors declare no competing interests. Competing interests Competing interests The authors declare no competing interests. p g The authors declare no competing interests. Additional information Supplementary information The online version contains supplementary material available at https://doi.org/10.1038/s41467-022-33427-1. Additional information Supplementary information The online version contains supplementary material available at https://doi.org/10.1038/s41467-022-33427-1. This is a U.S. Government work and not under copyright protection in the US; foreign copyright protection may apply 2022 Nature Communications| (2022) 13:5827 16
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Increased Incidence of Herpes Zoster and Postherpetic Neuralgia in Adult Patients following Traumatic Brain Injury: A Nationwide Population-Based Study in Taiwan
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RESEARCH ARTICLE Abstract Citation: Tung Y-C, Tu H-P, Tsai W-C, Chen C-S, Su C-H, Shi H-Y, et al. (2015) Increased Incidence of Herpes Zoster and Postherpetic Neuralgia in Adult Patients following Traumatic Brain Injury: A Nationwide Population-Based Study in Taiwan. PLoS ONE 10(6): e0129043. doi:10.1371/journal. pone.0129043 The aims of this study were to estimate the incidences of herpes zoster (HZ) and postherpetic neuralgia (PHN) in patients after traumatic brain injury (TBI). Furthermore, we aimed to ex- plore the risk factors of the development of HZ and PHN in patients after TBI. This population- based, longitudinal analysis was conducted using the Taiwan National Health Insurance Research Database (consisting of 1,000,000 beneficiaries) from 1996 to 2010. Using the lon- gitudinal National Health Insurance Research Database, we conducted a retrospective popu- lation-based cohort study to evaluate the incidence of HZ and PHN in adult TBI patients and controls. Kaplan-Meier analysis and Cox regression were used to compare differences in the development of HZ and PHN. The effects of gender, comorbidity and surgery on the risk of HZ and PHN development were assessed by subgroup analyses. Over a 15-year follow-up, the cumulative incidence of HZ in 28,234 TBI patients (604.00/100,000 person-years) was significantly higher than 34,085 controls (322.21/100,000 person-years) (P<0.0001, by log- rank test). Females showed a significantly higher incidence of HZ than males (p for interaction = 0.0010). The time to HZ development in the follow-up period was 5.9 years in TBI patients compared to 9.9 years in the control set (p <0.0001). TBI patients were 2.93 and 2.11 times likely to develop HZ and PHN, respectively, than the general population. The incidences of HZ and PHN in TBI patients were also significantly greater than for controls in the CCI = 0 subgroup. To our knowledge, this is the first population-based cohort study to reveal that TBI is an independent risk factor for HZ and PHN in TBI patients, especially in females. Physician should pay attention to the possibility of HZ and PHN in TBI patients and be aware that HZ vaccination early after brain trauma may lower the incidence of HZ and PHN. Academic Editor: Li-Min Huang, National Taiwan University Hospital, TAIWAN Received: November 28, 2014 Accepted: May 4, 2015 Published: June 11, 2015 Published: June 11, 2015 Copyright: © 2015 Tung et al. * chihlung1@yahoo.com Abstract This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Data Availability Statement: All relevant data are within the paper. Increased Incidence of Herpes Zoster and Postherpetic Neuralgia in Adult Patients following Traumatic Brain Injury: A Nationwide Population-Based Study in Taiwan Yi-Ching Tung1, Hung-Pin Tu1, Wen-Chan Tsai2, Cheng-Sheng Chen3, Chen-Hsiang Su3, Hon-Yi Shi4, Chih-Lung Lin5* 1 Department of Public Health and Environmental Medicine, College of Medicine, Kaohsiung Medical University, Kaohsiung, Taiwan, R.O.C, 2 Departments of Internal Medicine, Kaohsiung Medical University Hospital, Kaohsiung, Taiwan, R.O.C, 3 Departments of Psychiatry, Kaohsiung Medical University Hospital, Kaohsiung, Taiwan, R.O.C, 4 Department of Healthcare Administration and Medical Informatics, Kaohsiung Medical University, Kaohsiung, Taiwan, R.O.C, 5 Department of Neurosurgery, Kaohsiung Medical University Hospital, Kaohsiung, Taiwan, R.O.C * chihlung1@yahoo.com Introduction Herpes zoster (HZ) is a neurocutaneous disease caused by the reactivation of the latent varicella zoster virus (VZV). Direct involvement of the ganglia and the destruction of neurons during VZV reactivation have been suggested in the HZ syndrome. The acute phase is typically signi- fied by neurologic pain that often subsides spontaneously within 2–4 weeks. Complications of HZ include bacterial superinfection and postherpetic neuralgia (PHN) in 20–25% of HZ pa- tients [1–3]. Any complication could increase the cost of HZ-related care, imposing a substan- tial burden on the health care system [4]. Specific T-cell immunity is responsible for the body’s defense against VZV infection [3]. Declining cellular immunity due to increasing age or immu- nosuppression has been known to trigger reactivation of VZV [5]. Thus, HZ has been known to occur more frequently in patients with malignancies, human immunodeficiency virus (HIV) infection, transplantation, and immunosuppressive disorders, as well as in those undergoing treatment with immune suppressants [5]. Various diseases associated with impaired immunity, for example, rheumatic and peptic ulcer diseases and malignancies, have been reported to be correlated with an increased risk of HZ [6–8]. However, as many as 90% of HZ cases occur in immunocompetent individuals [9,10]. Although the HZ vaccine, which can reduce the inci- dence of HZ, has been available since 2006 for adults, the list of high risk groups that the vacci- nation would be appropriate for has not been clearly defined [11,12]. Thus, successful identification of potential predictors of HZ may help to define high risk patients and assist in the decision-making of administration of HZ vaccinations. With an annual estimate of 10 million victims affected by new traumatic brain injury (TBI) events, mainly including young adults, TBI is the leading cause of long-term disability and mortality worldwide [13–16]. Considering its impact, TBI is expected to become the third larg- est cause of global disease burden by 2020 [15]. The incidence of TBI is estimated to be 200– 558 per 100,000 people, equaling 1.7 million people in the USA, and the overall economic cost was estimated to be approximately $406 billion USD in 2000 [17–19]. In Taiwan, as many as 52,000 TBIs occur annually, among which, up to 25% are fatal [20,21]. The risk of HZ has been linked to cellular immunity associated with aging and nutrition sta- tus [22]. Data Availability Statement: All relevant data are within the paper. Funding: The authors have no support or funding to report. Competing Interests: The authors have declared that no competing interests exist. Competing Interests: The authors have declared that no competing interests exist. 1 / 12 PLOS ONE | DOI:10.1371/journal.pone.0129043 June 11, 2015 Herpes Zoster and Postherpetic Neuralgia after TBI Introduction Some postulated mechanisms have been reported to explain the association of TBI with immunosuppression and malnutrition. However, the duration and degree of immunosup- pression after TBI are still not clear [23]. Previous research has illustrated that patients with TBI suffer from an increased risk of malnutrition, resulting in altered immunity, which causes the body to be more susceptible to infections [24]. We therefore hypothesized that patients might have a greater risk of developing HZ and PHN after TBI. However, to date, statistical ev- idence regarding the association between TBI and the incidences of HZ and PHN is limited and therefore worthy of investigation. The Taiwan National Health Insurance Research Database (NHIRD) is an exceptional data- base from which we could obtain a representative and reliable calculation of the incidences of HZ and PHN in TBI patients in Taiwan. The aims of this study were to estimate the rates of HZ and PHN in patients following TBI using the NHIRD and to determine whether individu- als with TBI were at increased risk for HZ and PHN. Furthermore, we aimed to explore the risk factors in TBI patients for the development of HZ and PHN. Definitions of TBI, HZ and PHN TBI patients were identified by their associated International Classification of Diseases, 9th re- vision (ICD-9) codes. The following ICD-9 Clinical Modification (ICD-9-CM) codes were used to identify the patient records in this study: 800.x for a fracture of the vault and base of the skull, 803.x-804.x for other skull fractures, and 850.x-854.x for a concussion, brain contu- sion, or brain hemorrhage. To exclude very mild TBI patients, TBI patients in outpatient data sets were not included. For the definition of brain surgeries, the relevant procedure codes in- cluded craniectomy (01.23, 01.25, 01.39, and 02.01), removal of an epidural hematoma (01.24), removal of an acute subdural hematoma (01.31), removal of a chronic subdural hematoma (01.31), and removal of an intracerebral hematoma (01.39). Exclusion criteria included codes for multiple TBI procedures. Incident HZ cases were identified by an auto-matched search for codes for HZ and HZ complications (ICD-9 code 053.x) present in either an outpatient or in- patient service claim. Patients who were diagnosed with HZ prior to TBI were excluded from the analysis of cumulative incidence. PHN cases were identified by ICD-9 code 053.19. Addi- tionally, we excluded the patients younger than 18 and older than 100 years of age. Controls were selected using pair matching by age, sex and year of cohort entry in a ratio of approximately 1 to 2 through random selection from the LHID 2010 membership using the PROC SQL procedure of SAS (SAS Institute, Cary, NC). In addition, we also excluded TBI in- patients and healthy subjects who had diagnostic codes in the Charlson Comorbidity Index (CCI) [25] for HIV infection (ICD-9-CM 042.x–044.x), chronic pulmonary disease (416.8, 416.9, 490.x–505.x, 506.4, 508.1, 508.8), rheumatic disease (446.5, 710.0–710.4, 714.0–714.2, 714.8, 725.x), and metastatic solid tumor (196.x–199.x) from the study and control cohorts be- cause these patients may have been treated with immunosuppressive medication or suffered from immunosuppressive conditions that lead to the potential development of HZ [7,26]. Therefore, AIDS/HIV infection, chronic pulmonary disease and metastatic solid tumor were not included in the CCI scores, which included myocardial infarction, congestive heart failure, peripheral vascular disease, cerebrovascular disease, dementia, peptic ulcer disease, mild liver disease, diabetes without chronic complications, diabetes with chronic complications, hemiple- gia or paraplegia, renal disease, any malignancy (including lymphoma and leukemia, except for malignant neoplasm of the skin), and moderate or severe liver disease. Study design We conducted a retrospective cohort study from 1996–2010 using the Longitudinal Health In- surance Database (LHID), computed by the Taiwan National Health Insurance program, which contains one million random subjects. The NHIRD releases sets of sampling files for re- search purposes. The LHID 2010 contains the original claims of 1,000,000 beneficiaries ran- domly sampled during the period of Jan. 1, 2010 to Dec. 31, 2010. There were no significant differences in the sex, age distribution or insured payroll-related amounts between the patients in the LHID 2010 and those in the original NHIRD. Definitions of TBI, HZ and PHN The CCI scores were subsequently categorized into three levels: 0, 1, and  2. Ethics Statement The Institutional Review Board of the Kaohsiung Medical University Hospital approved this study in Taiwan. Written consent from study patients was not obtained because the Taiwan 2 / 12 PLOS ONE | DOI:10.1371/journal.pone.0129043 June 11, 2015 Herpes Zoster and Postherpetic Neuralgia after TBI Bureau of National Health Insurance (BNHI) is the sole payer in Taiwan and the BNHI dataset consists of de-identified secondary data for research purposes. Bureau of National Health Insurance (BNHI) is the sole payer in Taiwan and the BNHI dataset consists of de-identified secondary data for research purposes. Results Table 1 shows the patient characteristics in this study. We identified 28,234 adults with TBI and 34,085 controls matched by age and gender from 1996 to 2010. The TBI patients had a lower percentage of CCI scores equal to or greater than 1 based on the dichotomized outcome of the Charlson scores. The HZ development period was significantly faster in the TBI group (5.9 years) compared to the control group (9.9 years) during the follow-up period. The 1-, 5-, 10-, and 15-year actuarial rates of HZ were 0.45%, 2.63%, 5.82%, and 9.53% among TBI pa- tients and 0.00%, 0.43%, 2.23%, and 4.76% among controls, respectively. The cumulative inci- dence of HZ in TBI patients was significantly higher than that of the control cohorts (Log rank P <0.0001) over the follow-up period (Fig 1). Table 2 shows that the adjusted hazard ratios (HR) for HZ in males and females in the TBI group compared to controls were 2.39 (95% CI 2.13–2.69, p<0.0001) and 2.85 (95% CI 2.50– 3.24, p<0.0001), respectively, after adjusting for potential confounders. In addition, the Table 2 shows that the adjusted hazard ratios (HR) for HZ in males and females in the TBI group compared to controls were 2.39 (95% CI 2.13–2.69, p<0.0001) and 2.85 (95% CI 2.50– 3.24, p<0.0001), respectively, after adjusting for potential confounders. In addition, the Table 1. Characteristics of adult patients with traumatic brain injury and control cohorts in Taiwan, 1996–2010. TBI cases Controls P value n = 28,234 n = 34,085 Age (SD), years 45.6 (16.4) 45.7 (15.3) 0.8399 Age group, n (%) 18–29 5,695 (20.2) 6,268 (18.4) 30–39 6,497 (23.0) 7,848 (23.0) 40–49 5,033 (17.8) 6,554 (19.2) 50–59 5,112 (18.1) 6,528 (19.2) 60–69 3,232 (11.5) 4,488 (13.2) 70 2,665 (9.4) 2,399 (7.0) 0.5045 TBI-surgical cases, n (%) 1,637 (5.8) Gender, n (%) Males 16,753 (59.3) 19,991 (58.7) Females 11,481 (40.7) 14,094 (41.3) 0.0832 Charlson Comorbidity Index, n (%) 0 25,729 (91.1) 17,419 (51.1) 1 1,959 (6.9) 8,092 (23.7) 2 546(1.9) 8,574 (25.2) <0.0001 Herpes zoster, n (%) 1,466 (5.2) 1,621 (4.8) <0.0001 Period of developing HZ (SD), years 5.9 (3.6) 9.9 (3.3) <0.0001 TBI, traumatic brain injury; SD, standard deviation; HZ, herpes zoster doi:10.1371/journal.pone.0129043.t001 Table 1. Characteristics of adult patients with traumatic brain injury and control cohorts in Taiwan, 1996–2010. ith traumatic brain injury and control cohorts in Taiwan, 1996–2010. Statistical analysis Baseline characteristics were compared by t-tests for continuous data and by Pearson’s chi- square test for categorical variables. Incidence was calculated as the number of new cases from 1996 through 2010 divided by the total number of person-years in the available records. We 3 / 12 PLOS ONE | DOI:10.1371/journal.pone.0129043 June 11, 2015 Herpes Zoster and Postherpetic Neuralgia after TBI assessed the annual incidence of HZ in all adult TBI patients during the follow-up period. Dif- ferences in HZ occurrence between TBI patients and the controls were compared using the log-rank test. Kaplan–Meier analysis was used to calculate the cumulative incidence of HZ be- tween the two groups. Cox proportional hazards models were constructed, and a dichotomous variable denoted whether the patient had HZ or PHN during the study period. Stratified analy- sis was performed for males and females with HZ after TBI. The covariates used in the models included age, sex and CCI. Interactions between gender and TBI were analyzed using a multi- ple Cox proportional hazards model with an added interaction term (gender × TBI) and covar- iates. All statistical analyses were performed using SAS statistical software, version 9.3 (SAS Institute, Cary, NC), and the significance level was set at P < 0.05. Results Cox regression revealed that TBI was an independent predictor for HZ after adjusting for age, sex and CCI scores (HR 2.61, 95% CI 2.39–2.85, p<0.0001) (Table 2). incidence of HZ in TBI was significantly higher in females than in males (P for interac- tion = 0.0010). The incidence of HZ in TBI patients (604.00 per 100,000 person-years) was sig- nificantly greater than that in the control cohort (322.21 per 100,000 person-years). Cox regression revealed that TBI was an independent predictor for HZ after adjusting for age, sex and CCI scores (HR 2.61, 95% CI 2.39–2.85, p<0.0001) (Table 2). Among the HZ patients, TBI was a significant predictor for PHN after adjusting for age, sex and CCI scores (HR 2.00, 95% CI 1.44–2.76, P<0.0001) in both non-surgical (HR 1.97, 95% CI 1.42–2.74, P<0.0001) and surgical cases (HR 2.36, 95% CI 1.16–4.81, 0.0178) (Table 3). Fur- thermore, our data suggested that the incidence of HZ in TBI patients, in both nonsurgical and surgical patients, was also significantly greater than in controls in the CCI = 0 subgroup (HR 2.46, 95% CI 2.22–2.72, P<0.0001) or the 1 subgroup (HR 2.94, 95% CI 2.48–3.49, P<0.0001) (Table 4). Table 5 shows that the incidence of PHN in TBI patients with HZ was also significantly greater than in controls in the CCI 0 subgroup (HR 1 67 95% CI 1 11 2 50 P<0.0001) (Table 4). Table 5 shows that the incidence of PHN in TBI patients with HZ was also significantly greater than in controls in the CCI = 0 subgroup (HR 1.67, 95% CI 1.11–2.50, Table 2. Incidence and hazard ratios for herpes zoster during the follow-up period for adult patients with traumatic brain injury versus control cohorts. HZ Person-years at risk Incidence per 100,000 person-years (95% CI) Adjusted HR (95% CI) P P for interaction Male cohort set Controls 891 295,404.64 301.62(282.45–322.09) 1.0 TBI cases 747 144,931.02 515.42(479.75–553.74) 2.39a(2.13–2.69) <0.0001 Female cohort set Controls 730 207,679.32 351.50(326.91–377.95) 1.00 TBI cases 719 97,785.88 735.28(683.45–791.04) 2.85a(2.50–3.24) <0.0001 0.19, 0.0010 Total cohort set Controls 1,621 503,083.95 322.21(306.90–338.29) 1.00 TBI cases 1,466 242,716.89 604.00(573.86–635.72) 2.61b (2.39–2.85) <0.0001 HZ, herpes zoster; CI, confidence interval; HR, hazard ratio; TBI, traumatic brain injury. aAdjusted HRs with 95% CI and their P values. The results were adjusted for age and Charlson comorbidity index using a Cox proportional-hazards regression model. bAdjusted HRs with 95% CI and their P values. Results haracteristics of adult patients with traumatic brain injury and control cohorts in Taiwan, 1996–2010. PLOS ONE | DOI:10.1371/journal.pone.0129043 June 11, 2015 4 / 12 Herpes Zoster and Postherpetic Neuralgia after TBI incidence of HZ in TBI was significantly higher in females than in males (P for interac- tion = 0.0010). The incidence of HZ in TBI patients (604.00 per 100,000 person-years) was sig- nificantly greater than that in the control cohort (322.21 per 100,000 person-years). Cox regression revealed that TBI was an independent predictor for HZ after adjusting for age, sex and CCI scores (HR 2.61, 95% CI 2.39–2.85, p<0.0001) (Table 2). Among the HZ patients, TBI was a significant predictor for PHN after adjusting for age, sex and CCI scores (HR 2.00, 95% CI 1.44–2.76, P<0.0001) in both non-surgical (HR 1.97, 95% CI 1.42–2.74, P<0.0001) and surgical cases (HR 2.36, 95% CI 1.16–4.81, 0.0178) (Table 3). Fur- thermore, our data suggested that the incidence of HZ in TBI patients, in both nonsurgical and surgical patients, was also significantly greater than in controls in the CCI = 0 subgroup (HR 2.46, 95% CI 2.22–2.72, P<0.0001) or the 1 subgroup (HR 2.94, 95% CI 2.48–3.49, P<0.0001) (Table 4). Table 5 shows that the incidence of PHN in TBI patients with HZ was also significantly greater than in controls in the CCI = 0 subgroup (HR 1.67, 95% CI 1.11–2.50, Fig 1. Cumulative incidence of herpes zoster for adult patients with traumatic brain injury and the general population control cohort. doi:10.1371/journal.pone.0129043.g001 Table 2. Incidence and hazard ratios for herpes zoster during the follow-up period for adult patients with traumatic brain injury versus control cohorts. HZ Person-years at risk Incidence per 100,000 person-years (95% CI) Adjusted HR (95% CI) P P for interaction Fig 1. Cumulative incidence of herpes zoster for adult patients with traumatic brain injury and the general population control cohort. doi:10 1371/journal pone 0129043 g001 Fig 1. Cumulative incidence of herpes zoster for adult patients with traumatic brain injury and the general population control cohort. doi:10.1371/journal.pone.0129043.g001 doi:10.1371/journal.pone.0129043.g001 doi:10.1371/journal.pone.0129043.g001 incidence of HZ in TBI was significantly higher in females than in males (P for interac- tion = 0.0010). The incidence of HZ in TBI patients (604.00 per 100,000 person-years) was sig- nificantly greater than that in the control cohort (322.21 per 100,000 person-years). doi:10.1371/journal.pone.0129043.t002 Herpes Zoster and Postherpetic Neuralgia after TBI Table 3. Incidence and hazard ratios for post-herpetic neuralgia during the follow-up period for adult patients with traumatic brain injury among herpes zoster patients. Total PHN, n (%) Person-years at risk Incidence per 100,000 person-years (95% CI) Adjusted HR (95% CI) P HZ without TBI 1,621 88 (5.43) 7,769.57 1,132.62 (919.06–1,395.81) 1.00 HZ with TBI Nonsurgical TBI 1,398 141 (10.09) 5,756.38 2,449.46 (2,076.75–2,889.05) 1.97 (1.42–2.74) <0.0001 Surgical TBI 68 9 (13.24) 238.64 3,771.34 (1,962.26–7,248.29) 2.36 (1.16–4.81) 0.0178 Combined TBI 1,466 150 (10.23) 5,995.02 2,502.08 (2,132.06–2,936.31) 2.00 (1.44–2.76) <0.0001 PHN, postherpetic neuralgia; CI, confidence interval; HR, hazard ratio; HZ, herpes zoster; TBI, traumatic brain injury; Adjusted HRs with 95% CI and their P values were adjusted for age, sex and Charlson comorbidity index using a Cox proportional-hazards regression model. r post-herpetic neuralgia during the follow-up period for adult patients with traumatic brain injury among Table 3. Incidence and hazard ratios for post-herpetic neuralgia during the follow-up period for adult patien herpes zoster patients. nce interval; HR, hazard ratio; HZ, herpes zoster; TBI, traumatic brain injury; Adjusted HRs with 95% CI and their Charlson comorbidity index using a Cox proportional-hazards regression model. PHN, postherpetic neuralgia; CI, confidence interval; HR, hazard ratio; HZ, herpes zoster; TBI, traumatic brain injury; Adjusted HRs with 95% CI and their P values were adjusted for age, sex and Charlson comorbidity index using a Cox proportional-hazards regression model. PHN, postherpetic neuralgia; CI, confidence interval; HR, hazard ratio; HZ, herpes zoster; TBI, traumatic b P values were adjusted for age, sex and Charlson comorbidity index using a Cox proportional-hazards reg P = 0.0130) or the 1 subgroup (HR 2.24, 95% CI 1.33–3.79, P = 0.0026). These results suggest that TBI is associated with an increased risk of developing HZ and PHN, independent of other comorbidities (CCI). P = 0.0130) or the 1 subgroup (HR 2.24, 95% CI 1.33–3.79, P = 0.0026). These results suggest that TBI is associated with an increased risk of developing HZ and PHN, independent of other comorbidities (CCI). The ratios of hazard ratio (RHR) of HZ in controls and TBI patients with a CCI 1 com- pared with a CCI = 0 were 1.36 (95% CI 1.22–1.51, P<0.0001) and 1.11 (95% CI 0.94–1.31, P = 0.2261), respectively (Table 6). Similarly, when we compared patients in the CCI 1 and CCI = 0 subgroups, the RHRs of PHN in these HZ patients with and without TBI were not sig- nificantly different (Table 6). These data suggested that TBI is a significant prediction factor for either HZ or PHN development, independent of the CCI factor. The subgroup of TBI patients with surgical treatment had higher incidences and HRs for HZ (HR 1.05, 95% CI 0.82–1.34, P = 0.1318) and PHN (HR 1.29, 95% CI 0.66–2.54, P = 0.4567) when compared with TBI patients without surgical treatment. However, the differ- ences were not statistically significant (Table 7). Results The results were adjusted for age, sex and Charlson comorbidity index using a Cox proportional-hazards regression model. P for interaction: a Cox proportional-hazards regression model including a gender x TBI interaction was applied doi:10.1371/journal.pone.0129043.t002 Table 2. Incidence and hazard ratios for herpes zoster during the follow-up period for adult patients with traumatic brain injury versus control cohorts. ble 2. Incidence and hazard ratios for herpes zoster during the follow-up period for adult patients with trauma horts Table 2. Incidence and hazard ratios for herpes zoster during the follow-up period for adult patients with cohorts. rpes zoster during the follow-up period for adult patients with traumatic brain injury versus control HZ, herpes zoster; CI, confidence interval; HR, hazard ratio; TBI, traumatic brain injury. aAdjusted HRs with 95% CI and their P values. The results were adjusted for age and Charlson comorbidity index using a Cox proportional-hazards regression model. regression model. bAdjusted HRs with 95% CI and their P values. The results were adjusted for age, sex and Charlson comorbidity index using a Cox proportional-hazards regression model. f C bAdjusted HRs with 95% CI and their P values. The results were adjusted for age, sex and Charlson comorbidity index using a Cox proportional-hazards regression model. PLOS ONE | DOI:10.1371/journal.pone.0129043 June 11, 2015 5 / 12 Herpes Zoster and Postherpetic Neuralgia after TBI r postherpetic neuralgia during the follow-up period for herpes zoster patients with traumatic brain injury n comorbidity index = 0 or  1. Table 5. Incidence and hazard ratios for postherpetic neuralgia during the follow-up period for herpes zoster patients with traumatic brain injury (TBI) versus without TBI with a Charlson comorbidity index = 0 or  1. Total PHN n (%) Person years at risk Incidence per 100 000 person years (95% CI) HR (95% CI) P Table 5. Incidence and hazard ratios for postherpetic neuralgia during the follow-up period for herpes zoster patients with traumatic brain injury (TBI) versus without TBI with a Charlson comorbidity index = 0 or  1. Table 5. Incidence and hazard ratios for postherpetic neuralgia during the follow-up period for herpes zoste (TBI) versus without TBI with a Charlson comorbidity index = 0 or  1. Table 5. Incidence and hazard ratios for postherpetic neuralgia during the follow-up period for herpes zoster patients with traumatic brain injury (TBI) versus without TBI with a Charlson comorbidity index = 0 or  1. Total PHN, n (%) Person-years at risk Incidence per 100,000 person-years (95% CI) HR (95% CI) P CCI = 0 HZ patients without TBI 647 31 (4.79) 3,073.66 1,008.57 (709.29–1,434.13) 1.00 HZ patients with TBI Nonsurgical TBI 1,247 120 (9.62) 5,163.05 2,324.21 (1,943.43–2,779.58) 1.65 (1.10–2.48) 0.0155 Surgical cases TBI 56 9 (16.07) 193.24 4,657.31 (2,423.24–8,951.06) 2.19 (1.00–4.75) 0.0487 Combined TBI 1,303 129 (9.9) 5,356.30 2,408.38 (2,026.65–2,862.01) 1.67 (1.11–2.50) 0.0130 CCI 1 HZ patients without TBI 974 57 (5.85) 4,695.91 1,213.82 (936.29–1,573.63) 1.00 HZ patients with TBI Nonsurgical TBI 151 21 (13.91) 593.33 3,539.38 (2,307.68–5,428.47) 2.41 (1.43–4.05) 0.0009 Surgical TBI 12 0 (0.0) 45.40 - - - Combined TBI 163 21 (12.88) 638.72 3,287.81 (2,143.66–5,042.64) 2.24 (1.33–3.79) 0.0026 PHN, postherpetic neuralgia; CI, confidence interval; HR, hazard ratio; CCI, Charlson comorbidity index; HZ, herpes zoster; TBI, traumatic brain injury; HRs with a 95% CI and their P values were calculated using a Cox proportional-hazards regression model. PHN, postherpetic neuralgia; CI, confidence interval; HR, hazard ratio; CCI, Charlson comorbidity index; HZ, herpes zoster; TBI, traumatic brain injury; HRs with a 95% CI and their P values were calculated using a Cox proportional-hazards regression model. greater risk of developing HZ and PHN than the control cohort. Discussion To our knowledge, this is the first population-based cohort study to assess the risk of HZ and PHN in an adult population following TBI. In this study, adults with TBI were found to be at Table 4. Incidence and hazard ratios for herpes zoster during the follow-up period for adult patients with traumatic brain injury versus control co- horts with a Charlson comorbidity index = 0 or  1. Total HZ, n (%) Person-years at risk Incidence per 100,000 person-years (95% CI) HR (95% CI) P CCI = 0 Controls 17,419 647 (3.71) 258,060.22 250.72(232.12–270.80) 1.00 TBI Nonsurgical TBI 24,386 1,247 (5.11) 215,107.94 579.71(548.41–612.80) 2.47 (2.23–2.70) <0.0001 Surgical TBI 1,343 56 (4.17) 9,447.50 592.75(456.17–770.23) 2.27 (1.72–2.99) <0.0001 Combined TBI 25,729 1,303 (5.06) 224,555.44 580.26 (549.59–612.64) 2.46 (2.22–2.72) <0.0001 CCI 1 Controls 16,666 974 (5.84) 245,023.74 397.51(373.32–423.28) 1.00 TBI Nonsurgical TBI 2,211 151 (6.83) 16,577.03 910.90(776.60–1,068.42) 2.96 (2.48–3.53) <0.0001 Surgical TBI 294 12 (4.08) 1,584.42 757.38(430.12–1,333.63) 2.73 (1.54–4.85) 0.0006 Combined TBI 2,505 163(6.51) 18,161.45 897.51 (769.78–1,046.43) 2.94 (2.48–3.49) <0.0001 HZ, herpes zoster; CI, confidence interval; HR, hazard ratio; CCI, Charlson comorbidity index; TBI, traumatic brain injury; HRs with a 95% CI and their P values were adjusted for age and sex using a Cox proportional-hazards regression model. / Table 4. Incidence and hazard ratios for herpes zoster during the follow-up period for adult patients with traumatic brain injury versus control co- horts with a Charlson comorbidity index = 0 or  1. Table 4. Incidence and hazard ratios for herpes zoster during the follow-up period for adult patients with tra horts with a Charlson comorbidity index = 0 or  1. HZ, herpes zoster; CI, confidence interval; HR, hazard ratio; CCI, Charlson comorbidity index; TBI, traumatic brain injury; HRs with a 95% CI and their P values were adjusted for age and sex using a Cox proportional-hazards regression model. PLOS ONE | DOI:10.1371/journal.pone.0129043 June 11, 2015 6 / 12 doi:10.1371/journal.pone.0129043.t005 PLOS ONE | DOI:10.1371/journal.pone.0129043 June 11, 2015 Herpes Zoster and Postherpetic Neuralgia after TBI r herpes zoster and postherpetic neuralgia during the follow-up period for surgical versus nonsurgical trau- Table 7. Incidence and hazard ratios for herpes zoster and postherpetic neuralgia during the follow-up period for surgical versus nonsurgical trau- matic brain injury patients. Event Person-years at risk Incidence per 100,000 person-years (95% CI) HR (95% CI) p Herpes zoster Nonsurgical TBI 1,398 231,684.97 603.41(572.59–635.88) 1.00 Surgical TBI 68 11,031.92 616.39(486.00–781.78) 1.05 (0.82–1.34) 0.1318 Post-herpetic neuralgia Nonsurgical TBI 141 5,756.38 2,449.46 (2,076.75–2,889.05) 1.00 Surgical TBI 9 238.64 3,771.34 (1,962.26–7,248.29) 1.29 (0.66–2.54) 0.4567 CI, confidence interval; HR, hazard ratio; TBI, traumatic brain injury; HRs with a 95% CI and their P values were calculated using a Cox proportional- hazards regression model. the selected comorbidities was 2.79 compared with the controls (P<0.0001). The data indicate that TBI is an independent risk factor for HZ, and all of the listed confounding effects of co- morbidities were excluded. There has been an active discussion of age and immunosuppression factors [30]. The rela- tionship of these two factors to post-TBI HZ has been excluded by adopting age-adjusted mea- sures (HRs) in this study and by the exclusion of patients with HIV infection, chronic pulmonary disease, rheumatic disease, and metastatic solid tumor as participants. According to previous studies, women are at higher risk of HZ development in some, but not all, age groups [5]. Our study demonstrated that women have a higher incidence of HZ than men in both the control and TBI groups, with much higher incidence rates in the TBI group (P for interaction = 0.0010). At the same time, the incidences of HZ among women and men in the TBI group were 3.4 and 2.6 times those of women and men in the control group, re- spectively. However, the information from this study is not sufficient to offer possible explana- tions for this gender difference in HZ incidence after TBI. Although some possibilities have been mentioned [5], whether women are more vulnerable to HZ than men due to certain psy- chological, physiological or social differences is worth examining. The incidence of HZ in the TBI group was significantly higher than that in the control group. Moreover, HZ occurred significantly earlier in the TBI patients than in the controls. Despite statistical evidence re- vealing TBI to be the leading cause of morbidity and mortality in the below-45 age group in the industrialized world, TBI is still a growing worldwide medical problem. Globally speaking, the annual incidence rate of HZ ranges from 1.2 to 3.4 among every 1,000 healthy individuals, with a higher rate of 3.9–11.8 among the individuals older than 65 [27–29]. Our results were consis- tent with a previous report and showed that TBI patients were 2.93 times more likely to develop HZ than the general population with incidences of 604.00 and 322.21 per 100,000 person-years in TBI and control groups, respectively. The adjusted HR of HZ in TBI patients with none of Table 6. Ratios of hazard ratio for herpes zoster and postherpetic neuralgia for adult patients with a Charlson comorbidity index (CCI)  1 versus a CCI = 0. CCI 1 versus CCI = 0 RHR (95% CI) P HZ Controls 1.36 (1.22–1.51) <0.0001 TBI Nonsurgical TBI 1.13 (0.95–1.34) 0.1646 Surgical TBI 0.97 (0.51–1.83) 0.9259 Combined TBI 1.11 (0.94–1.31) 0.2261 PHN HZ patients without TBI 1.10 (0.70–1.73) 0.6891 HZ patients with TBI Nonsurgical TBI 1.23 (0.77–1.97) 0.3895 Surgical TBI - - Combined TBI 1.09 (0.68–1.73) 0.7298 CCI, Charlson comorbidity index; RHR, ratio of hazard ratio; CI, confidence interval; HZ, herpes zoster; TBI, traumatic brain injury; PHN, postherpetic neuralgia RHRs with a 95% CI and their P values were adjusted for age and sex using a Cox proportional-hazards regression model. doi:10.1371/journal.pone.0129043.t006 Table 6. Ratios of hazard ratio for herpes zoster and postherpetic neuralgia for adult patients with a Charlson comorbidity index (CCI)  1 versus a CCI = 0. CCI, Charlson comorbidity index; RHR, ratio of hazard ratio; CI, confidence interval; HZ, herpes zoster; TBI, traumatic brain injury; PHN, postherpetic neuralgia RHRs with a 95% CI and their P values were adjusted for age and sex using a Cox proportional-hazards regression model. 7 / 12 PLOS ONE | DOI:10.1371/journal.pone.0129043 June 11, 2015 PLOS ONE | DOI:10.1371/journal.pone.0129043 June 11, 2015 Ad- ditionally, the growth rate was faster and higher in the TBI patients than in the controls from the beginning until 15 years of the follow-up period. Hence, the risk of HZ should be consid- ered when the treatment of TBI patients is initiated, and preventive measures for HZ should be administered early. Complications of HZ include bacterial superinfection and PHN in 20–25% of HZ patients [1–3]. Any HZ-related complication could substantially increase the cost and burden of medi- cal care [4]. In the United States, approximately 1 million individuals develop HZ annually, among which 20% of these cases result in PHN [31]. As far as age is concerned, patients with HZ have a lower incidence of PHN in the below-60 age group (less than 10%) compared to the above-60 age group (approximately 40%). Often, the older, more debilitated or immune com- promised a population is, the higher its risk of PHN is. In this study, TBI patients with HZ were 2.11 times more likely to develop PHN compared to the general population with HZ. Our results showed that incidences per 100,000 person-years were 1008.57 and 2408.38 in the con- trol and TBI groups, respectively. The lower incidences of PHN in our study may be due to the exclusion of immunocompromised patients in our enrolled cases. The adjusted HRs of PHN in TBI patients with none of the selected comorbidities was 1.67 compared with the controls 8 / 12 PLOS ONE | DOI:10.1371/journal.pone.0129043 June 11, 2015 Herpes Zoster and Postherpetic Neuralgia after TBI (P = 0.0130). The data indicate that TBI is associated with an increased risk for developing PHN even after excluding the potential confounding effects of comorbidities. (P = 0.0130). The data indicate that TBI is associated with an increased risk for developing PHN even after excluding the potential confounding effects of comorbidities. While considering the impact of comorbidity, patients with a CCI 1 had a significantly higher risk, compared with those with a CCI = 0, for the development of HZ, but not for PHN, in the control group. However, regarding both HZ and PHN in the TBI patients, there were no significant differences between the CCI 1 and CCI = 0 subgroups. Previous studies have shown that some comorbidities are risk factors of HZ [8]. Our results found the independent impact of TBI on the development of HZ and PHN. When categorizing the TBI group into sur- gical and non-surgical subgroups, the surgical subgroup was 1.05 and 1.29 times more likely to develop HZ and PHN, respectively, than the non-surgical subgroup. However, the differences were not statistically significant. The small sample size of the subject groups with HZ and PHN undergoing surgical treatment may have caused the lack of statistical significance. Higher CCI in the control group compared to TBI group could be a bias in this study. Thus, the result may underestimate the significance of HZ in the TBI group. Since the HZ vaccine became available for adults in 2006, and for adults in Taiwan in 2014, its administration has been recommended for immunocompetent individuals aged 60 years or older. However, vaccination rates of zoster vaccine are low [11,12]. There are various studies on the possible risk factors for HZ aimed at producing better strategies for HZ vaccination [6,26]. A recent study by Chen et al. suggested that adults with peptic ulcer disease are at a higher risk for HZ development compared with the general population; therefore, the benefits for HZ vaccination need detailed clinical examination in patients with peptic ulcer disease [8]. Despite the evidence that the HZ vaccine is effective in the prevention of HZ, its effect on PHN is yet to be confirmed. Essentially, if HZ could be prevented, PHZ could also be avoided [29]. Our results showed significantly higher incidences of HZ and PHN in patients following TBI, and the duration of the development of HZ was shorter compared with the control group. We also found that TBI is an independent risk factor for HZ and PHN. Thus, TBI patients have a greater need for vaccination than the general population to lower the incidence of HZ and PHN. In Taiwan, we implemented massive and free varicella vaccination for children in 2014. The impact of this policy on HZ infection in the general population has not yet been observed. The risk of HZ has been linked to cellular immunity associated with aging and nutrition sta- tus [22]. In addition, nutritional deficiencies of vitamin C and zinc have also been identified as predictors for HZ and PHN [32,33]. Possible underlying mechanisms to explain the association of TBI with HZ, as well as with PHN, could be proposed. In an attempt to determine a possible mechanism of immunosuppression in post-TBI patients with HZ, many uncertainties have been demonstrated. PLOS ONE | DOI:10.1371/journal.pone.0129043 June 11, 2015 First, the CNS has been regarded as an entity that is reactive to peripheral immune infiltration. Nevertheless, recent studies have proven that the opposite may be true, central immunoactivation may impose its effect on the periphery, resulting in peripheral im- munological events [34]. Thus various immunologic mediators of the CNS are suggested to be involved in the immune functions and may play a role in the host response to endogenous or exogenous stimuli. Second, in patients suffering from brain injury and undergoing neurosur- gery, the release of proinflammatory cytokines into the cerebrospinal fluid may occur with no signs of systemic inflammation, but this has been associated with systemic immunosuppression and an increased risk of infection [35–37]. Third, the early, delayed, and systemic effects of TBI are the result of inflammatory mediators that initiate systemic inflammatory response syn- drome (SIRS), resulting in a vicious cycle of hyperinflammation. Consequently, the hypothala- mus-pituitary-axis and the sympathetic nervous system provide negative feedback for the hyperinflammation, resulting in compensatory anti-inflammatory response syndrome (CARS). However, in the case of acute TBI, the activation of CARS often causes complications of immunosuppression, such as multi-organ dysfunction syndrome and mortality. Currently, PLOS ONE | DOI:10.1371/journal.pone.0129043 June 11, 2015 9 / 12 Herpes Zoster and Postherpetic Neuralgia after TBI the duration and degree of immunosuppression after TBI are still elusive [23]. Fourth, previous studies have illustrated that patients with TBI suffer from an increased risk of malnutrition, an- other major factor for immunosuppression. The possible causes are multi-factorial, including poor or imbalanced nutritional intake, decreased mobility, and adverse effects of medication or treatment plans. Subsequently, malnutrition complicates the clinical progression of such pa- tients, hence disturbing the immune system and leaving the body more vulnerable to infections [24]. Other complications of TBI, such as lifelong cognitive, physical and behavioral impair- ments, may lead to malnutrition, even in patients with mild TBIs [38,39]. In summary, TBI pa- tients are prone to developing HZ and PHN through the possible common pathways of impaired cellular immunity and/or depressed nutritional status after TBI. Our study is based on non-biased samples from a nationwide population-based database, the NHIRD. With approximately 96% of Taiwan’s population enrolled in the database, the re- sults of our study can be generalized to the population of Taiwan [21]. This study, similar to the situations encountered by studies based on large-scale databases, has the following limitations. First, the clinical picture of TBI, HZ and PHN obtained by ana- lyzing insurance claims data without review of medical records is not as precise as that obtained by analyzing prospective clinical trial data. The difference may be caused by possible errors in the coding of primary diagnoses and treatment modalities in those databases. Moreover, some risk factors could not be obtained through the NHIRD; therefore, the relationship between these factors and the HZ and PHN rates could not be evaluated. Fortunately, given the relative homogeneity of Taiwan’s population, potential confounding factors induced by racial diversity, which may be a risk factor for developing HZ, could be reduced [40]. Nonetheless, future large-scale investigations into other racial groups and geographical regions is needed to deter- mine whether our results may be applicable to the worldwide population [41]. Second, infor- mation on nutritional and immunological status of the subjects was not available from our database. Although we adjusted our data for age, sex and comorbidity to validate the negative influence of TBI on the incidence of HZ and PHN in the present study, some unknown con- founding factors might still have impacted our results. A further prospective large-scale study is needed to evaluate some unknown confounding factors on the impact of the incidence of HZ and PHN. Third, the Glasgow Coma Scale (GCS) scores and Glasgow Outcome Scale (GOS), which are important factors in evaluating the severity and outcome of TBI, were not included in this study due to their unavailability from the NHIRD database. Therefore, the correlation between the severity and outcome of TBI and the incidences of HZ and PHN could not be es- tablished. We found that TBI patients following surgery had a higher tendency to develop HZ and PHN compared with TBI patients without surgery. The patients with surgery were selected from inpatient clinics with moderate to severe TBIs, excluding most of the patients with mild or very severe injuries (GCS of 15 or 3, respectively). Therefore, the severity of the TBI could not be inferred from whether the patient underwent surgery. A further prospective large-scale study is needed to evaluate the impacts of GCS and GOS on the incidence of HZ and PHN. References 1. Kinchington PR, Leger AJ, Guedon JM, Hendricks RL. (2012) Herpes simplex virus and varicella zoster virus, the house guests who never leave. Herpesviridae 3:5. doi: 10.1186/2042-4280-3-5 PMID: 22691604 1. Kinchington PR, Leger AJ, Guedon JM, Hendricks RL. (2012) Herpes simplex virus and varicella zoster virus, the house guests who never leave. Herpesviridae 3:5. doi: 10.1186/2042-4280-3-5 PMID: 22691604 2. Gnann JW Jr., Whitley RJ. (2002) Clinical practice. Herpes zoster. N Engl J Med 347:340–46. PMID: 12151472 3. Arvin A. (2005) Aging, immunity, and the varicella-zoster virus. N Engl J Med 352:2266–67. PMID: 15930416 4. Yawn BP, Itzler RF, Wollan PC, Pellissier JM, Sy LS, Saddier P. (2009) Health care utilization and cost burden of herpes zoster in a community population. Mayo Clin Proc 84:787–94. doi: 10.1016/S0025- 6196(11)60488-6 PMID: 19720776 5. Thomas SL, Hall AJ. (2004) What does epidemiology tell us about risk factors for herpes zoster? Lancet Infect Dis 4:26–33. PMID: 14720565 6. Joesoef RM, Harpaz R, Leung J, Bialek SR. (2012) Chronic medical conditions as risk factors for her- pes zoster. Mayo Clin Proc 87:961–67. doi: 10.1016/j.mayocp.2012.05.021 PMID: 23036671 7. ng YW, Chen YH, Wang KH, Wang CY, Lin HW. (2011) Risk of herpes zoster among patients with chronic obstructive pulmonary disease: a population-based study. CMAJ 183:E275–80. doi: 10.1503/ cmaj.101137 PMID: 21343261 8. Chen JY, Cheng TJ, Chang CY, Lan KM, Weng SF, Sheu MJ et al. (2013) Increased incidence of her- pes zoster in adult patients with peptic ulcer disease: a population-based cohort study. Int J Epidemiol 42:1873–81. doi: 10.1093/ije/dyt213 PMID: 24536094 9. Jih JS, Chen YJ, Lin MW, Chen YC, Chen TJ, Huang YL et al. (2009) Epidemiological features and costs of herpes zoster in Taiwan: a national study 2000 to 2006. Acta Derm Venereol 89:612–16. doi: 10.2340/00015555-0729 PMID: 19997693 10. Lin YH, Huang LM, Chang IS, Tsai FY, Lu CY, Shao PL et al. (2010) Disease burden and epidemiology of herpes zoster in pre-vaccine Taiwan. Vaccine 28:1217–20. doi: 10.1016/j.vaccine.2009.11.029 PMID: 19944790 11. Rimland D, Moanna A. (2010) Increasing incidence of herpes zoster among Veterans. Clin Infect Dis 50:1000–05. doi: 10.1086/651078 PMID: 20178416 12. Opstelten W, van Essen GA, Hak E. (2009) Determinants of non-compliance with herpes zoster vacci- nation in the community-dwelling elderly. Vaccine 27:192–96. doi: 10.1016/j.vaccine.2008.10.047 PMID: 18996427 13. Ruff RL, Riechers RG. (2012) Effective treatment of traumatic brain injury: learning from experience. Jama 308:2032–33. doi: 10.1001/jama.2012.14008 PMID: 23168827 14. Washington CW, Grubb RL Jr. Conclusion To our knowledge, this population based cohort study is the first report to assess the risk of HZ and PHN in an adult population with TBI. In this study, TBI was found to be an independent risk factor for HZ and PHN. The results from our study could draw the attention of physicians to the possibility of HZ and PHN in TBI patients and could bring awareness that early HZ vac- cination after brain trauma may be helpful for TBI patients, especially female patients, to lower the incidences of HZ and PHN. Early prevention is the best way to prevent post-herpetic com- plications, improve the quality of life and reduce the medical burden. The effects of vaccination 10 / 12 PLOS ONE | DOI:10.1371/journal.pone.0129043 June 11, 2015 Herpes Zoster and Postherpetic Neuralgia after TBI in TBI patients are worth evaluating. If the mechanism underlying the association between HZ and PHN and TBI could be illustrated in further studies, more effective strategies could hope- fully be implemented. in TBI patients are worth evaluating. If the mechanism underlying the association between HZ and PHN and TBI could be illustrated in further studies, more effective strategies could hope- fully be implemented. Author Contributions Conceived and designed the experiments: YCT HPT CLL. Performed the experiments: YCT HPT WCT CLL. Analyzed the data: YCT HPT WCT CSC CHS HYS CLL. Contributed re- agents/materials/analysis tools: YCT HPT CLL. Wrote the paper: YCT HPT CLL. Conceived and designed the experiments: YCT HPT CLL. Performed the experiments: YCT HPT WCT CLL. Analyzed the data: YCT HPT WCT CSC CHS HYS CLL. Contributed re- agents/materials/analysis tools: YCT HPT CLL. Wrote the paper: YCT HPT CLL. PLOS ONE | DOI:10.1371/journal.pone.0129043 June 11, 2015 References Dworkin RH, Johnson RW, Breuer J, Gnann JW, Levin MJ, Backonja M et al. (2007) Recommendations for the management of herpes zoster. Clin Infect Dis 44 Suppl 1:S1–26. PMID: 17143845 28. Donahue JG, Choo PW, Manson JE, Platt R. (1995) The incidence of herpes zoster. Arch Intern Med 155:1605–09. PMID: 7618983 29. Araujo LQ, Macintyre CR, Vujacich C. (2007) Epidemiology and burden of herpes zoster and post-her- petic neuralgia in Australia, Asia and South America. Herpes 14 Suppl 2:40–44. PMID: 17939895 30. Wung PK, Holbrook JT, Hoffman GS, Tibbs AK, Specks U, Min YI et al. (2005) Herpes zoster in immu- nocompromised patients: incidence, timing, and risk factors. Am J Med 118:1416. PMID: 16378799 31. Schmader KE. (2002) Epidemiology and impact on quality of life of postherpetic neuralgia and painful diabetic neuropathy. Clin J Pain 18:350–54. PMID: 12441828 32. Chen JY, Chang CY, Lin YS, Hu ML. (2012) Nutritional factors in herpes zoster, postherpetic neuralgia, and zoster vaccination. Popul Health Manag 15:391–97. doi: 10.1089/pop.2012.1563 PMID: 23088666 33. Chen JY, Chang CY, Feng PH, Chu CC, So EC, Hu ML. (2009) Plasma vitamin C is lower in postherpe- tic neuralgia patients and administration of vitamin C reduces spontaneous pain but not brush-evoked pain. Clin J Pain 25:562–69. doi: 10.1097/AJP.0b013e318193cf32 PMID: 19692796 34. Morganti-Kossmann MC, Satgunaseelan L, Bye N, Kossmann T. (2007) Modulation of immune re- sponse by head injury. Injury 38:1392–400. PMID: 18048036 35. Asadullah K, Woiciechowsky C, Docke WD, Egerer K, Kox WJ, Vogel S et al. (1995) Very low monocyt- ic HLA-DR expression indicates high risk of infection—immunomonitoring for patients after neurosur- gery and patients during high dose steroid therapy. Eur J Emerg Med 2:184–90. PMID: 9422205 36. Asadullah K, Woiciechowsky C, Docke WD, Liebenthal C, Wauer H, Kox W et al. (1995) Immunode- pression following neurosurgical procedures. Crit Care Med 23:1976–83. PMID: 7497720 37. Woiciechowsky C, Asadullah K, Nestler D, Eberhardt B, Platzer C, Schöning B et al. (1998) Sympathet- ic activation triggers systemic interleukin-10 release in immunodepression induced by brain injury. Nat Med 4:808–13. PMID: 9662372 38. Shi HY, Hwang SL, Lee KT, Lin CL. (2013) Temporal trends and volume-outcome associations after traumatic brain injury: a 12-year study in Taiwan. J Neurosurg 118:732–38. doi: 10.3171/2012.12. JNS12693 PMID: 23350773 39. Feigin VL, Theadom A, Barker-Collo S, Starkey NJ, McPherson K, Kahan M et al. (2013) Incidence of traumatic brain injury in New Zealand: a population-based study. References (2012) Are routine repeat imaging and intensive care unit admission necessary in mild traumatic brain injury? J Neurosurg 116:549–57. doi: 10.3171/2011.11.JNS111092 PMID: 22196096 15. Hyder AA, Wunderlich CA, Puvanachandra P, Gururaj G, Kobusingye OC. (2007) The impact of trau- matic brain injuries: a global perspective. NeuroRehabilitation 22:341–53. PMID: 18162698 16. Chiu HY, Chen PY, Chen NH, Chuang LP, Tsai PS. (2013) Trajectories of sleep changes during the acute phase of traumatic brain injury: a 7-day actigraphy study. J Formos Med Assoc 112:545–53. doi: 10.1016/j.jfma.2013.06.007 PMID: 23906685 17. Leibson CL, Brown AW, Ransom JE, Diehl NN, Perkins PK, Mandrekar J et al. (2011) Incidence of trau- matic brain injury across the full disease spectrum: a population-based medical record review study. Epidemiology 22:836–44. doi: 10.1097/EDE.0b013e318231d535 PMID: 21968774 18. Thurman DJ, Alverson C, Dunn KA, Guerrero J, Sniezek JE. (1999) Traumatic brain injury in the United States: A public health perspective. J Head Trauma Rehabil 14:602–15. PMID: 10671706 PLOS ONE | DOI:10.1371/journal.pone.0129043 June 11, 2015 11 / 12 Herpes Zoster and Postherpetic Neuralgia after TBI 19. Corso P, Finkelstein E, Miller T, Fiebelkorn I, Zaloshnja E. (2006) Incidence and lifetime costs of injuries in the United States. Inj Prev 12:212–18. PMID: 16887941 20. Chiu WT, Huang SJ, Tsai SH, Lin JW, Tsai MD, Lin TJ et al. The impact of time, legislation, and geogra- phy on the epidemiology of traumatic brain injury. (2007) J Clin Neurosci 14:930–35. PMID: 17646104 21. Shi HY, Hwang SL, Lee KT, Lin CL. (2013) In-hospital mortality after traumatic brain injury surgery: a nationwide population-based comparison of mortality predictors used in artificial neural network and lo- gistic regression models. J Neurosurg 118:746–52. doi: 10.3171/2013.1.JNS121130 PMID: 23373802 22. Lesourd B. (2006) Nutritional factors and immunological ageing. Proc Nutr Soc 65:319–25. PMID: 16923315 23. Woodcock T, Morganti-Kossmann MC. (2013) The role of markers of inflammation in traumatic brain in- jury. Front Neurol 4:18. doi: 10.3389/fneur.2013.00018 PMID: 23459929 24. Planas Vila M. (2014) [Nutritional and metabolic aspects of neurological diseases]. Nutr Hosp 29 Suppl 2:3–12. PMID: 25077336 25. Quan H, Sundararajan V, Halfon P, Fong A, Burnand B, Luthi JC et al. (2005) Coding algorithms for de- fining comorbidities in ICD-9-CM and ICD-10 administrative data. Med Care 43:1130–39. PMID: 16224307 26. Hata A, Kuniyoshi M, Ohkusa Y. (2011) Risk of Herpes zoster in patients with underlying diseases: a retrospective hospital-based cohort study. Infection 39:537–44. doi: 10.1007/s15010-011-0162-0 PMID: 21800108 27. PLOS ONE | DOI:10.1371/journal.pone.0129043 June 11, 2015 References Lancet Neurol 12:53–64. doi: 10. 1016/S1474-4422(12)70262-4 PMID: 23177532 40. Schmader K, George LK, Burchett BM, Pieper CF, Hamilton JD. (1995) Racial differences in the occur- rence of herpes zoster. J Infect Dis 171:701–04. PMID: 7876622 41. Borkar DS, Tham VM, Esterberg E, Ray KJ, Vinoya AC, Parker JV et al. (2013) Incidence of herpes zoster ophthalmicus: results from the Pacific Ocular Inflammation Study. Ophthalmology 120:451–56. doi: 10.1016/j.ophtha.2012.09.007 PMID: 23207173 12 / 12 PLOS ONE | DOI:10.1371/journal.pone.0129043 June 11, 2015
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Determining dominant partial waves in photoproduction via moment analysis
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Determining dominant partial waves in photoproduction via moment analysis sität Bonn, Helmholtz-Institut für Strahlen- und Kernphysik, 53115 Bonn, Germany 1Universität Bonn, Helmholtz-Institut für Strahlen- und Kernphysik, 53115 Bonn, Germany Abstract. Important insights into the excitation spectra of baryons are provided by measurements of polar- ization observables in reactions that involve particles with spin. The photoproduction of a single pseudoscalar meson constitutes an example-reaction that has been under intense investigation recently. We present the basic method of moment-analysis for pseudoscalar meson photoproduction, in which just the angular distributions are analyzed. Using this method, the total angular momentum quantum number of the dominant partial waves contributing in the data can be extracted quickly. Furthermore, the Legendre-coefficients extracted from the angular distributions show interesting composition-patterns in terms of multipoles and allow for instructive comparisons to models. In this contribution, recent results for moment analyses of polarization data for the photoproduction of pions and eta-mesons are shown. aσ0 n (W) = ℓmax  ℓ,k=0 A∗ ℓ(W)Cn ℓkAk(W). (3) In baryon spectroscopy, the extraction of resonance pa- rameters from scattering data represents the most impor- tant central problem. A standard-approach to the solution of this problem, which has taken center stage over the last 50 years, is given by fits of so-called energy-dependent (ED) partial-wave analysis (PWA-) models. Well-known examples for such approaches are the Bonn-Gatchina (BnGa-) model [1], the Jülich-Bonn (JüBo-) model [2, 3], the MAID-analysis [4] and the SAID-PWA [5]. A com- prehensive overview of these examples is given in refer- ence [6]. In each case, a reaction-theory is constructed, which satisfies the well-established theoretical S -Matrix principles [7] (analyticity, unitarity and crossing) with varying degrees of rigor. Within the context of such a model, resonances are extracted as poles on the second Riemann-sheet of the scattering amplitude. (3) Here, for the scalar example, the coupling-coefficients Cn ℓk in the bilinear equation (3) are well-known and given by [8, 9] Cn ℓk = ⟨ℓ, 0; k, 0|n, 0⟩2 (2ℓ+ 1) (2k + 1) (2n + 1) . (4) (4) Here, the ⟨ℓ, m; ℓ′, m′|n, M⟩are the usual Clebsch-Gordan coefficients. The central problem in a SE fit is then to solve for the real- and imaginary parts of generally phase-constrained1 par- tial waves. Thus, one first extracts the Legendre-moments using equation (2). Then, one solves the bilinear equa- tions (3) and it is this second step in which multiple dis- crete ambiguities [9, 10] can, and probably will, occur. 1Some kind of constraint has to be introduced on the overall phase of the partial waves due to the bilinear nature of the equations (3). EPJ Web of Conferences 241, 0300 (2020) NSTAR 2019 6 EPJ Web of Conferences 241, 0300 (2020) NSTAR 2019 6 http://doi.org/10.1051/epjconf/202024103006 © The Authors, published by EDP Sciences. This is an open access article distributed under the terms of the Creative Commons Attribution License 4.0 (http://creativecommons.org/licenses/by/4.0/). ∗e-mail: wunderlich@hiskp.uni-bonn.de © The Authors, published by EDP Sciences. This is an open access article distributed under the terms of the Creative Commons Attribution License 4.0 (http://creativecommons org/licenses/by/4 0/) DP Sciences. This is an open access article distributed under the terms of the Creative Commons Attribution License 4.0 ses/by/4 0/) Determining dominant partial waves in photoproduction via moment analysis Such ambiguities require additional theoretical input on some subset of the partial waves in order to be resolved. However, one could also remain, in a first instance, with the moment-analysis using (2) and try to use it in order to learn as much about the present dataset as possible. Another approach to analyze scattering observables is rep- resented by single-energy (SE) fits, or truncated partial- wave analyses (TPWAs). The simplest possible example is given by 2 →2-scattering of spinless particles. The only possible observable, i.e. the differential cross section σ0, is defined in terms of the amplitude as σ0 = |A(W, θ)|2. The infinite partial-wave series for the amplitude reads This latter idea can be generalized to more complicated re- actions involving particles with spin without a lot of addi- tional effort. The photoproduction of a single pseudoscalar meson is one example for such a reaction. We write the process in the most general form as γN −→ϕB, where ϕ is a pseudoscalar meson and B a recoil-baryon. The follow- ing formalism can thus be applied to the most commonly met example of pion-photoproduction ϕB = πN, but also other reactions such as eta-photoproduction ϕB = ηN or the production of kaons ϕB = KΛ, . . . may be studied. A(W, θ) = ∞  ℓ=0 (2ℓ+ 1)AℓPℓ(cos θ). (1) (1) In case one truncates this series at some maximal angular momentum quantum number ℓmax, one obtains the follow- ing expansion for the cross section (see reference [8]) In case one truncates this series at some maximal angular momentum quantum number ℓmax, one obtains the follow- ing expansion for the cross section (see reference [8]) σ0(W, θ) = q k 2ℓmax  n=0 aσ0 n (W)Pn(cos θ), (2) (2) The photoproduction reaction is described using 4 ∗e-mail: wunderlich@hiskp.uni-bonn.de ∗e-mail: wunderlich@hiskp.uni-bonn.de Therefore, we introduce a short-notation [14] for these interference- blocks, using the spectroscopic notation of S, P, D, . . . for the angular momenta ℓ= 0, 1, 2, . . .. For example, a con- tribution coming from an interference-block complex spin-amplitudes, for instance CGLN-amplitudes {Fi(W, θ), i = 1, . . . , 4} [11], accompanied by 16 polariza- tion observables [12, 13]. The observables are defined in terms of the amplitudes as bilinear hermitean forms and they divide into the subsets of group S observables {σ0, Σ, T, P} and furthermore three classes of beam-target (BT ), beam-recoil (BR) and target-recoil (T R) observ- ables with four quantities each. The CGLN-amplitudes can be expanded into a well-known partial-wave series us- ing electric and magnetic multipoles Eℓ±, Mℓ±  [11, 12]. In case one truncates the multipole-series at some ℓmax, the observables acquire the following standard-form [9, 15], which is tantamount to the equations (2,3) in the scalar case: complex spin-amplitudes, for instance CGLN-amplitudes {Fi(W, θ), i = 1, . . . , 4} [11], accompanied by 16 polariza- tion observables [12, 13]. The observables are defined in terms of the amplitudes as bilinear hermitean forms and they divide into the subsets of group S observables {σ0, Σ, T, P} and furthermore three classes of beam-target (BT ), beam-recoil (BR) and target-recoil (T R) observ- ables with four quantities each. The CGLN-amplitudes can be expanded into a well-known partial-wave series us- ing electric and magnetic multipoles Eℓ±, Mℓ±  [11, 12]. complex spin-amplitudes, for instance CGLN-amplitudes {Fi(W, θ), i = 1, . . . , 4} [11], accompanied by 16 polariza- tion observables [12, 13]. The observables are defined in terms of the amplitudes as bilinear hermitean forms and they divide into the subsets of group S observables {σ0, Σ, T, P} and furthermore three classes of beam-target (BT ), beam-recoil (BR) and target-recoil (T R) observ- ables with four quantities each. The CGLN-amplitudes can be expanded into a well-known partial-wave series us- ing electric and magnetic multipoles Eℓ±, Mℓ±  [11, 12].  M,M′={E,M}  p,p′={±} cM,M′ p,p′ M∗ 0pM′ 1p′. (8) (8) In case one truncates the multipole-series at some ℓmax, the observables acquire the following standard-form [9, 15], which is tantamount to the equations (2,3) in the scalar case: between S - and P-wave multipoles would be just written as ⟨S, P⟩. ∗e-mail: wunderlich@hiskp.uni-bonn.de © The Authors, published by EDP Sciences. This is an open access article distributed under the terms of the Creative Commons Attribution License 4.0 (http://creativecommons.org/licenses/by/4.0/). ess article distributed under the terms of the Creative Commons Attribution License 4.0 EPJ Web of Conferences 241, 0300 (2020) NSTAR 2019 6 EPJ Web of Conferences 241, 0300 (2020) 6 http://doi.org/10.1051/epjconf/202024103006 Type ˇΩα βα γα Type ˇΩα βα γα σ0 0 0 ˇOx′ 1 0 S ˇΣ 2 −2 BR ˇOz′ 2 −1 ˇT 1 −1 ˇCx′ 1 0 ˇP 1 −1 ˇCz′ 0 +1 ˇE 0 0 ˇTx′ 2 −1 BT ˇG 2 −2 T R ˇTz′ 1 0 ˇH 1 −1 ˇLx′ 1 0 ˇF 1 −1 ˇLz′ 0 +1 Table 1: We list here the parameters needed to evaluate the angular parametrizations for the 16 polarization observables of pseudoscalar meson photoproduction given in equations (5) and (6). Such a Table was first published by Tiator [15] (see also references [9, 14]). Type ˇΩα βα γα Type ˇΩα βα γα σ0 0 0 ˇOx′ 1 0 S ˇΣ 2 −2 BR ˇOz′ 2 −1 ˇT 1 −1 ˇCx′ 1 0 ˇP 1 −1 ˇCz′ 0 +1 ˇE 0 0 ˇTx′ 2 −1 BT ˇG 2 −2 T R ˇTz′ 1 0 ˇH 1 −1 ˇLx′ 1 0 ˇF 1 −1 ˇLz′ 0 +1 Table 1: We list here the parameters needed to evaluate the angular parametrizations for the 16 polarization observables of pseudoscalar meson photoproduction given in equations (5) and (6). Such a Table was first published by Tiator [15] (see also references [9, 14]). Table 1: We list here the parameters needed to evaluate the angular parametrizations for the 16 polarization observables of pseudoscalar meson photoproduction given in equations (5) and (6). Such a Table was first published by Tiator [15] (see also references [9, 14]). Table 1: We list here the parameters needed to evaluate the angular parametrizations for the 16 polarization observables of pseudoscalar meson photoproduction given in equations (5) and (6). Such a Table was first published by Tiator [15] (see also references [9, 14]). It is a fact that once the matrices C ˇΩα k are evaluated, one ob- serves that in all cases the matrixes decompose into blocks of interference-terms among multipoles of certain definite orbital angular momentum quantum number ℓ. ∗e-mail: wunderlich@hiskp.uni-bonn.de Each Legendre-moment generally contains mul- tiple such blocks and therefore, several of the short-forms for interference-blocks are added together in order to de- scribe the partial wave decomposition of a particular mo- ment (see Table 2). ˇΩα(W, θ) = q k 2ℓmax+βα+γα  n=βα aℓmax  ˇΩα n (W) Pβα n (cos θ), (5) aℓmax  ˇΩα k (W) = Mℓmax (W)  C ˇΩα k Mℓmax (W) . (6) ˇΩα(W, θ) = q k 2ℓmax+βα+γα  n=βα aℓmax  ˇΩα n (W) Pβα n (cos θ), (5) The question whether or not specific minimal subsets of the bilinear forms (6) allow for an unambiguous amplitude extraction in so-called complete experiments has been ad- dressed in the classic work by Omelaenko [16] and in the more recent references [9, 17]. (6) where we have adopted a notation by Chiang and Tabakin [13] to denote the observables ˇΩα and the index α runs as α = 1, . . . , 16. The Pβα n (cos θ) are associated Legendre polynomials. The multipoles which are present in a certain truncation-order define the vector The formalism outline above allows for moment-analyses in pseudoscalar meson photoproduction. The following two main aspects are important: Mℓmax = E0+, E1+, M1+, M1−, E2+, E2−, . . . , Mℓmax− T . (7) (I) ℓmax-analysis: The parametrization (5) of the angular distribution is fitted for different ℓmax. The χ2/ndf is compared for different fits, ascending from the lowest possible order. In case the goodness of fit is unsatis- factory, one has to increase ℓmax. Once a good fit is obtained, the resulting ℓmax gives, in a lot of cases, al- ready quite a good estimate for the maximal angular momentum detectable in the data. Plots of χ2/ndf vs. energy show ’bumps’ whenever new important contri- butions from higher angular momenta enter the data (cf. Figures 3,4, top). (I) ℓmax-analysis: The parametrization (5) of the angular distribution is fitted for different ℓmax. The χ2/ndf is compared for different fits, ascending from the lowest possible order. In case the goodness of fit is unsatis- factory, one has to increase ℓmax. Once a good fit is obtained, the resulting ℓmax gives, in a lot of cases, al- ready quite a good estimate for the maximal angular momentum detectable in the data. Plots of χ2/ndf vs. ∗e-mail: wunderlich@hiskp.uni-bonn.de In case of π0-photoproduction, we consider a dataset for the observable ˇE recently measured by the A2- collaboration at MAMI, and which has been first pub- lished in the PhD-thesis [18]. The formula (5) reads, when adapted to the observable ˇE, as follows (see also Table 1) The same effect can be seen in the plot for a ˇE 2 on the right of Figure 1. The extracted values for the Legendre- moment show a pronounced cusp right at the pη-threshold. Furthermore, the cusp enters into the BnGa model-curves once the D-waves are included. Here, this cusp-effect is due to the ⟨S, D⟩- and ⟨D, D⟩interference-blocks. However, contrary to the results for the moment a ˇE 0 , (small) F-wave corrections are important already below the pη-threshold. ˇE(W, θ) = q k 2ℓmax  n=0 aℓmax  ˇE n (W) Pn(cos θ). (9) (9) This expression has been fitted to the data for different ℓmax and an order of ℓmax = 4 was sufficient to yield a sat- isfactory fit over the whole measured energy-region. The plot of χ2/ndf vs. energy, as well as several exemplary angular distributions, are shown in Figure 3. This expression has been fitted to the data for different ℓmax and an order of ℓmax = 4 was sufficient to yield a sat- isfactory fit over the whole measured energy-region. The plot of χ2/ndf vs. energy, as well as several exemplary angular distributions, are shown in Figure 3. For the process of η-photoproduction, we consider a dataset for the beam-asymmetry ˇΣ, which has been recently measured by the CBELSA/TAPS- collaboration [18–20]. When using the general ex- pression (5) for the observable ˇΣ, one obtains the following angular parametrization Furthermore, we show plots of the two selected Legendre- moments a ˇE 0 and a ˇE 2 in Figure 1 (see also the thesis [18]). In these plots, the energy-region has been zoomed in, in order to facilitate a more detailed view of the fit-results for the moments. Furthermore, a model-comparison is shown for the Bonn-Gatchina solution BnGa 2017_02, which has been used to re-evaluate both of the moments using different truncation orders. We see that for a ˇE 0 below the pη-threshold, i.e. for roughly W < 1500 MeV, BnGa S - and P-waves are largely sufficient to describe the fit-results for the moment. Very close to the pη-threshold, a small correction due to D-waves is needed. ∗e-mail: wunderlich@hiskp.uni-bonn.de for ℓ= 0, 1, 2, . . .. Table 2: The matrix C ˇE 0 which defines the coefficient (a2) ˇE 0 for an expansion of ˇE up to ℓmax = 2 is shown. Every matrix element defines a particular multipole-interference term. As a generic feature, the matrices C ˇΩα n decompose into blocks of interference terms between multipoles with definite orbital angular momentum quantum number ℓ(cf. equations (6) and (7)). Therefore, a short-notation for interference-terms is introduced, using the spectroscopic notation of S, P, D, . . . for ℓ= 0, 1, 2, . . .. certain model partial waves. In this way, sometimes one obtains valuable information on which partial wave in- terferences are important. Furthermore, one can try to interpret the results of such comparisons in view of im- portant physical effects visible in the data. to cusp-like behaviours and they are basically a direct consequence of the combination of the principles of analyticity and unitarity. We conclude that this particular polarization measurement is precise enough to show such sophisticated theoretical effects directly in the data, or more precisely in the extracted Legendre-moments. Furthermore, we see in the comparison-plot that for a ˇE 0 , the cusp-effect enters due to a ⟨D, D⟩interference-term. ˇ to cusp-like behaviours and they are basically a direct consequence of the combination of the principles of analyticity and unitarity. We conclude that this particular polarization measurement is precise enough to show such sophisticated theoretical effects directly in the data, or more precisely in the extracted Legendre-moments. Furthermore, we see in the comparison-plot that for a ˇE 0 , the cusp-effect enters due to a ⟨D, D⟩interference-term. The same effect can be seen in the plot for a ˇE 2 on the right of Figure 1. The extracted values for the Legendre- moment show a pronounced cusp right at the pη-threshold. Furthermore, the cusp enters into the BnGa model-curves once the D-waves are included. Here, this cusp-effect is due to the ⟨S, D⟩- and ⟨D, D⟩interference-blocks. However, contrary to the results for the moment a ˇE 0 , (small) F-wave corrections are important already below the pη-threshold. We commence with the discussion of results obtained from new data for π0- and η-photoproduction [18–20]. ∗e-mail: wunderlich@hiskp.uni-bonn.de energy show ’bumps’ whenever new important contri- butions from higher angular momenta enter the data (cf. Figures 3,4, top). A set of parameters which defines the photoproduction moment-expansion for all 16 observables is given in Ta- ble 1 (cf. reference [14]). Tiator [15] first published sim- ilarly formalized expansions for an expansion into powers of cos(θ). The matrices defining the coefficients (6) as bilinear forms are hermitean and have dimensions (4ℓmax) × (4ℓmax), for ℓmax ≥1. We have to report that during the course of the thesis [9], no closed expression for these matrices has been found, which would be analogous to the result (4) from the scalar reactions. However, they can be calculated numer- ically for each relevant truncation order ℓmax. The results for group S and BT observables in the order ℓmax = 5 have been collected in the appendices of [9]. As an exam- ple, the matrix C ˇE 0 is shown in Table 2 for the truncation order ℓmax = 2. (II) Model-comparisons: The fitted Legendre-moments aℓmax  ˇΩα k can be compared to the right hand side of equa- tion (6), i.e. to the definitions of the moments as bilinear forms in terms of multipoles. The latter can be evalu- ated using multipoles Mℓstemming from an ED model. These comparisons can be performed switching on/off 2 EPJ Web of Conferences 241, 0300 (2020) NSTAR 2019 6 EPJ Web of Conferences 241, 0300 (2020) 6 http://doi.org/10.1051/epjconf/202024103006 C ˇE 0 = ⎡⎢⎢⎢⎢⎢⎢⎢⎢⎢⎢⎢⎢⎢⎢⎢⎢⎢⎢⎢⎢⎢⎢⎢⎢⎢⎢⎢⎢⎢⎢⎢⎢⎢⎣ 1 0 0 0 0 0 0 0 0 3 3 0 0 0 0 0 0 3 −1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 6 0 12 0 0 0 0 0 0 −1 0 −3 0 0 0 0 12 0 −3 0 0 0 0 0 0 −3 0 3 ⎤⎥⎥⎥⎥⎥⎥⎥⎥⎥⎥⎥⎥⎥⎥⎥⎥⎥⎥⎥⎥⎥⎥⎥⎥⎥⎥⎥⎥⎥⎥⎥⎥⎥⎦ ≡⟨S, S ⟩+ ⟨P, P⟩+ ⟨D, D⟩ Table 2: The matrix C ˇE 0 which defines the coefficient (a2) ˇE 0 for an expansion of ˇE up to ℓmax = 2 is shown. Every matrix element defines a particular multipole-interference term. As a generic feature, the matrices C ˇΩα n decompose into blocks of interference terms between multipoles with definite orbital angular momentum quantum number ℓ(cf. equations (6) and (7)). Therefore, a short-notation for interference-terms is introduced, using the spectroscopic notation of S, P, D, . . . ∗e-mail: wunderlich@hiskp.uni-bonn.de Then, for all energies above the pη-threshold, the BnGa F-waves are required to correct the continuous curve such that it coincides with the fitted values for the Legendre-moment. One feature of the shown result is striking: exactly at the pη-threshold, the fitted values show a pronounces, sudden change in direction, or ’cusp’. Furthermore, analytic S -Matrix theory requires amplitudes to have branch-point singularities precisely at the energies corresponding to the opening of thresholds [7, 21]. Such singularities lead ˇΣ(W, θ) = q k 2ℓmax  n=2 aℓmax ˇΣ n (W) P2 n(cos θ). (10) (10) The resulting plots of χ2/ndf vs. energy, as well as some fitted angular distributions, can be seen in Figure 4. Over the whole fitted energy-region, again a truncation-order of ℓmax = 4 is found to yield a satisfactory fit quality. As an example for an extracted Legendre-moment, we consider here the quantity aˇΣ 4. A plot of the extracted val- ues, as well as a comparison to the Bonn-Gatchina so- lution BnGa 2014_02, are shown in Figure 2a. The fit- ted Legendre-moment, which is consistent with zero in the lower energy region, shows a pronounced rise, which looks like a cusp-like structure, right at the pη′-threshold. Furthermore, the solution BnGa 2014_02 cannot describe this structure. As can be seen in some exemplary angu- lar distributions shown in Figure 2a, the rise of the mo- ment aˇΣ 4 to values significantly larger than zero is in corre- spondence with the appearance of a backward-peak in the 3 EPJ Web of Conferences 241, 0300 (2020) NSTAR 2019 6 EPJ Web of Conferences 241, 0300 (2020) 6 http://doi.org/10.1051/epjconf/202024103006 W [MeV] 1400 1600 1800 b/sr] μ [ 0 E) 4 (a 1 − 0 1 (a4) ˇE 0 = ⟨S, S ⟩+ ⟨P, P⟩ +⟨D, D⟩+ ⟨F, F⟩ + ⟨G,G⟩ preliminary pη pη′ KΣ KΛ multipoles: BnGa 2017_02 W [MeV] 1400 1600 1800 b/sr] μ [ 2 E) 4 (a 0.5 − 0 0.5 1 1.5 (a4) ˇE 2 = ⟨P, P⟩+ ⟨S, D⟩ +⟨D, D⟩+ ⟨P, F⟩ +⟨F, F⟩+ ⟨D,G⟩ + ⟨G,G⟩ preliminary pη pη′ KΣ KΛ Figure 1: Shown are the two Legendre-moments a ˇE 0 (left) and a ˇE 2 (right), extracted from a recent dataset for the observable ˇE measured in the reaction γp →π0p by the A2-collaboration at MAMI [18]. The coefficients have been extracted using equation (9) in the truncation-order ℓmax = 4. ∗e-mail: wunderlich@hiskp.uni-bonn.de The fitted values for the moments are shown as blue dots. Continuous curves show the respective Legendre-moment, evaluated using multipoles from the recent Bonn-Gatchina solution BnGa 2017_02, up to the finite truncation orders: ℓmax = 1 (green curve), ℓmax = 2 (blue), ℓmax = 3 (red) and ℓmax = 4 (black). The composition of the respective Legendre moment as a bilinear form in the multipoles is written in the short-notation on the right of the respective plot. Threshold-energies of important photoproduction final-states are illustrated by dash-dotted vertical lines. (color online) W [MeV] 1400 1600 1800 b/sr] μ [ 2 E) 4 (a 0.5 − 0 0.5 1 1.5 (a4) ˇE 2 = ⟨P, P⟩+ ⟨S, D⟩ +⟨D, D⟩+ ⟨P, F⟩ +⟨F, F⟩+ ⟨D,G⟩ + ⟨G,G⟩ preliminary pη pη′ KΣ KΛ W [MeV] 1400 1600 1800 b/sr] μ [ 0 E) 4 (a 1 − 0 1 ( preliminary pη pη′ KΣ KΛ pη Figure 1: Shown are the two Legendre-moments aE 0 (left) and aE 2 (right), extracted from a recent dataset for the observable ˇE measured in the reaction γp →π0p by the A2-collaboration at MAMI [18]. The coefficients have been extracted using equation (9) in the truncation-order ℓmax = 4. The fitted values for the moments are shown as blue dots. Continuous curves show the respective Legendre-moment, evaluated using multipoles from the recent Bonn-Gatchina solution BnGa 2017_02, up to the finite truncation orders: ℓmax = 1 (green curve), ℓmax = 2 (blue), ℓmax = 3 (red) and ℓmax = 4 (black). The composition of the respective Legendre moment as a bilinear form in the multipoles is written in the short-notation on the right of the respective plot. Threshold-energies of important photoproduction final-states are illustrated by dash-dotted vertical lines. (color online) measured angular distribution for ˇΣ. This backward-peak needs the modulation aˇΣ 4P2 4(cos θ) in order to be described. This will be discussed in more detail in upcoming publi- cations (for instance [19]). For a comparison of the extracted values for the mo- ment aˇΣ 4 to a more recent BnGa-solution, see Figure 2b. There, it is seen that the more recent solution BnGa 2017_02 can describe the cusp a lot better and that further- more, the cusp-structure enters the model-curve once the G-waves are included, via an ⟨S,G⟩interference-block. ∗e-mail: wunderlich@hiskp.uni-bonn.de For a more involved discussion of the physical meaning of this cusp-effect in η-photoproduction data, see upcom- ing publications [19]. We conclude that in a new era of polarization- measurements, the precision of the data has become good enough to be directly sensitive to singularities in the am- plitudes as dictated by S -matrix theory. This puts new in- creased demands to the construction and fit of ED mod- els. Furthermore, moment-analysis is the ideal method to make sensitivities to such singularities visible. 4 EPJ Web of Conferences 241, 0300 (2020) NSTAR 2019 6 EPJ Web of Conferences 241, 0300 (2020) 6 http://doi.org/10.1051/epjconf/202024103006 W [MeV] 1800 1900 2000 b/sr] μ [ 4 Σ) 4 (a 0.005 − 0 0.005 0.01 (a4)ˇΣ 4 = ⟨D, D⟩+ ⟨P, F⟩ +⟨F, F⟩+ ⟨S,G⟩ + ⟨D,G⟩+ ⟨G,G⟩ +⟨P, H⟩+ ⟨F, H⟩ +⟨H, H⟩ preliminary pη′ multipoles: BnGa 2014_02 -1.0 -0.5 0.0 0.5 1.0 -0.1 0.0 0.1 0.2 0.3 cos() 0*[b] W = 1781 MeV −−−−−−−−−−−−−−−−→ preliminary -1.0 -0.5 0.0 0.5 1.0 -0.05 0.00 0.05 0.10 0.15 0.20 cos() 0*[b] W = 1900 MeV −−−−−−−→ preliminary -1.0 -0.5 0.0 0.5 1.0 -0.05 0.00 0.05 0.10 0.15 0.20 cos() 0*[b] W = 2018 MeV −−−−−−−−−−−−−−−−−→ preliminary (a) The Legendre-moments aˇΣ 4, extracted from a recent dataset for the observable ˇΣ measured in the reaction γp →ηp by the CBELSA/TAPS-collaboration [18–20] is shown at the top. The coefficient has been extracted using equation (10) in the truncation- order ℓmax = 4. The fitted values are shown as black dots. Continuous curves show the Legendre-moment, evaluated using multipoles from the Bonn-Gatchina solution BnGa 2014_02, up to the finite truncation orders: ℓmax = 1 (green curve), ℓmax = 2 (blue), ℓmax = 3 (red), ℓmax = 4 (black) and ℓmax = 5 (cyan). The composition of the Legendre moment as a bilinear form in the multipoles is written in the short-notation on the right of the plot. The threshold-energy of the pη′ final state is illustrated by the dash-dotted vertical line. Furthermore, three angular distributions of the profile function ˇE = σ0E are shown at the bottom of the figure. For the three exemplary energies, the different contributions from individual Legendre-moments to the fitted function are shown as modulations. In particular, these are the contributions (cf. ∗e-mail: wunderlich@hiskp.uni-bonn.de equation (10)): aˇΣ 2P2 2(cos θ) (green solid line), aˇΣ 3P2 3(cos θ) (blue solid line), aˇΣ 4P2 4(cos θ) (blue dashed line), aˇΣ 5P2 5(cos θ) (red solid line), aˇΣ 6P2 6(cos θ) (red dashed line), aˇΣ 7P2 7(cos θ) (black solid line), aˇΣ 8P2 8(cos θ) (black dashed line). Arrows indicate the corresponding energy-bins in the plot of aˇΣ 4. (color online) -1.0 -0.5 0.0 0.5 1.0 -0.1 0.0 0.1 0.2 0.3 cos() 0*[b] W = 1781 MeV −−−− preliminary -1.0 -0.5 0.0 0.5 1.0 -0.05 0.00 0.05 0.10 0.15 0.20 cos() 0*[b] W = 2018 MeV −−−−− preliminary W = 1781 MeV (a) The Legendre-moments aˇΣ 4, extracted from a recent dataset for the observable ˇΣ measured in the reaction γp →ηp by the CBELSA/TAPS-collaboration [18–20] is shown at the top. The coefficient has been extracted using equation (10) in the truncation- order ℓmax = 4. The fitted values are shown as black dots. Continuous curves show the Legendre-moment, evaluated using multipoles from the Bonn-Gatchina solution BnGa 2014_02, up to the finite truncation orders: ℓmax = 1 (green curve), ℓmax = 2 (blue), ℓmax = 3 (red), ℓmax = 4 (black) and ℓmax = 5 (cyan). The composition of the Legendre moment as a bilinear form in the multipoles is written in the short-notation on the right of the plot. The threshold-energy of the pη′ final state is illustrated by the dash-dotted vertical line. Furthermore, three angular distributions of the profile function ˇE = σ0E are shown at the bottom of the figure. For the three exemplary energies, the different contributions from individual Legendre-moments to the fitted function are shown as modulations. In particular, these are the contributions (cf. equation (10)): aˇΣ 2P2 2(cos θ) (green solid line), aˇΣ 3P2 3(cos θ) (blue solid line), aˇΣ 4P2 4(cos θ) (blue dashed line), aˇΣ 5P2 5(cos θ) (red solid line), aˇΣ 6P2 6(cos θ) (red dashed line), aˇΣ 7P2 7(cos θ) (black solid line), aˇΣ 8P2 8(cos θ) (black dashed line). Arrows indicate the corresponding energy-bins in the plot of aˇΣ 4. (color online) Furthermore, three angular distributions of the profile function E = σ0E are shown at the bottom of the figure. For the three exemplary energies, the different contributions from individual Legendre-moments to the fitted function are shown as modulations. In particular, these are the contributions (cf. ∗e-mail: wunderlich@hiskp.uni-bonn.de equation (10)): aˇΣ 2P2 2(cos θ) (green solid line), aˇΣ 3P2 3(cos θ) (blue solid line), aˇΣ 4P2 4(cos θ) (blue dashed line), aˇΣ 5P2 5(cos θ) (red solid line), aˇΣ 6P2 6(cos θ) (red dashed line), aˇΣ 7P2 7(cos θ) (black solid line), aˇΣ 8P2 8(cos θ) (black dashed line). Arrows indicate the corresponding energy-bins in the plot of aˇΣ 4. (color online) W [MeV] 1800 1900 2000 b/sr] μ [ 4 ) 4 (a 0.005  0 0.005 0.01 W [MeV] 1800 1900 2000 (a4)ˇΣ 4 = ⟨D, D⟩+ ⟨P, F⟩ +⟨F, F⟩+ ⟨S, G⟩ + ⟨D,G⟩+ ⟨G,G⟩ +⟨P, H⟩+ ⟨F, H⟩ +⟨H, H⟩ preliminary preliminary multipoles: BnGa 2014_02 multipoles: BnGa 2017_02 (b) Here, the same Legendre-moment is shown as in Figure 2a (see also references [18, 19]). However, for the two plots different BnGa- solutions were used in order to evaluate the continuous curves, i.e. the solutions BnGa 2014_02 (left) and BnGa 2017_02 (right). In particular, in case of BnGa 2017_02, one can see the pη′-cusp in the continuous curves once the G-waves are included. The composition of the Legendre-moment in terms of the short-notations for interference terms is shown on the right of the plots. The threshold-energy of the pη′ final state is shown as a dash-dotted vertical line. (color online) multipoles: BnGa 2014_02 multipoles: BnGa 2014_02 multipoles: BnGa 2017_02 (b) Here, the same Legendre-moment is shown as in Figure 2a (see also references [18, 19]). However, for the two plots different BnGa- solutions were used in order to evaluate the continuous curves, i.e. the solutions BnGa 2014_02 (left) and BnGa 2017_02 (right). In particular, in case of BnGa 2017_02, one can see the pη′-cusp in the continuous curves once the G-waves are included. The composition of the Legendre-moment in terms of the short-notations for interference terms is shown on the right of the plots. The threshold-energy of the pη′ final state is shown as a dash-dotted vertical line. (color online) Figure 2: Plots showing the Legendre-moment aˇΣ 4, extracted from η-photoproduction data [18–20]. Figure 2: Plots showing the Legendre-moment aˇΣ 4, extracted from η-photoproduction data [18–20]. ∗e-mail: wunderlich@hiskp.uni-bonn.de 5 http://doi.org/10.1051/epjconf/202024103006 EPJ Web of Conferences 241, 0300 (2020) NSTAR 2019 6 EPJ Web of Conferences 241, 0300 (2020) 6 W [MeV] 1200 1400 1600 1800 /ndf 2 χ 0 5 10 15 =1 max L =2 max L =3 max L =4 max L [MeV] γ E 500 1000 preliminary (a) Figure 3: The double- polarization observable ˇE data from the A2-collaboration at MAMI [18], with only statistical error, was fitted using associated Legendre polynomials accord- ing to the Legendre moment expansions (5,9) and truncating the expansion at ℓmax = 1, . . . , 4. (a) The resulting χ2/ndf values for fits with different orders ℓmax as a function of the center of mass energy W and photon LAB-energy Eγ are shown. (b) 12 out of 38 selected angular distributions of ˇΣ (black points) are plotted together with fit- curves for different ℓmax (solid lines), starting at W= 1484 MeV up to 1855 MeV. ∗e-mail: wunderlich@hiskp.uni-bonn.de (color online) θ cos 1 − 0.5 − 0 0.5 1 b/sr] μ [ E 0 0.5 1 1.5 W=1484 MeV preliminary (b) θ cos 1 − 0.5 − 0 0.5 1 b/sr] μ [ E 0 0.5 1 1.5 W=1522 MeV preliminary θ cos 1 − 0.5 − 0 0.5 1 b/sr] μ [ E 0.5 − 0 0.5 1 W=1558 MeV preliminary θ cos 1 − 0.5 − 0 0.5 1 b/sr] μ [ E 1 − 0 1 W=1594 MeV preliminary θ cos 1 − 0.5 − 0 0.5 1 b/sr] μ [ E 1.5 − 1 − 0.5 − 0 0.5 W=1629 MeV preliminary θ cos 1 − 0.5 − 0 0.5 1 b/sr] μ [ E 3 − 2 − 1 − 0 W=1663 MeV preliminary θ cos 1 − 0.5 − 0 0.5 1 b/sr] μ [ E 2 − 1 − 0 W=1697 MeV preliminary θ cos 1 − 0.5 − 0 0.5 1 b/sr] μ [ E 1 − 0.5 − 0 0.5 W=1730 MeV preliminary θ cos 1 − 0.5 − 0 0.5 1 b/sr] μ [ E 0.5 − 0 0.5 W=1762 MeV preliminary θ cos 1 − 0.5 − 0 0.5 1 b/sr] μ [ E 0.5 − 0 0.5 W=1794 MeV preliminary θ cos 1 − 0.5 − 0 0.5 1 b/sr] μ [ E 0.5 − 0 0.5 W=1825 MeV preliminary θ cos 1 − 0.5 − 0 0.5 1 b/sr] μ [ E 0.5 − 0 0.5 W=1855 MeV preliminary W [MeV] 1200 1400 1600 1800 /ndf 2 χ 0 5 10 15 =1 max L =2 max L =3 max L =4 max L [MeV] γ E 500 1000 preliminary (a) Figure 3: The double- polarization observable ˇE data from the A2-collaboration at MAMI [18], with only statistical error, was fitted using associated Legendre polynomials accord- ing to the Legendre moment expansions (5,9) and truncating the expansion at ℓmax = 1, . . . , 4. (a) The resulting χ2/ndf values for fits with different orders ℓmax as a function of the center of mass energy W and photon LAB-energy Eγ are shown. (b) 12 out of 38 selected angular distributions of ˇΣ (black points) are plotted together with fit- curves for different ℓmax (solid lines), starting at W= 1484 MeV up to 1855 MeV. ∗e-mail: wunderlich@hiskp.uni-bonn.de (color online) /ndf 2 χ (a) θ cos 1 − 0.5 − 0 0.5 1 b/sr] μ [ E 0 0.5 1 1.5 W=1484 MeV preliminary θ cos 1 − 0.5 − 0 0.5 1 b/sr] μ [ E 0 0.5 1 1.5 W=1522 MeV preliminary θ cos 1 − 0.5 − 0 0.5 1 b/sr] μ [ E 1 − 0 1 W=1594 MeV preliminary θ cos 1 − 0.5 − 0 0.5 1 b/sr] μ [ E 1.5 − 1 − 0.5 − 0 0.5 W=1629 MeV preliminary sr] W=1697 MeV sr] W=1730 MeV θ cos 1 − 0.5 − 0 0.5 1 b/sr] μ [ E 0 0.5 1 1.5 W=1484 MeV preliminary (b) θ cos 1 − 0.5 − 0 0.5 1 b/sr] μ [ E 0 0.5 1 1.5 W=1522 MeV preliminary θ cos 1 − 0.5 − 0 0.5 1 b/sr] μ [ E 0.5 − 0 0.5 1 W=1558 MeV preliminary θ cos 1 − 0.5 − 0 0.5 1 b/sr] μ [ E 1 − 0 1 W=1594 MeV preliminary θ cos 1 − 0.5 − 0 0.5 1 b/sr] μ [ E 1.5 − 1 − 0.5 − 0 0.5 W=1629 MeV preliminary θ cos 1 − 0.5 − 0 0.5 1 b/sr] μ [ E 3 − 2 − 1 − 0 W=1663 MeV preliminary θ cos 1 − 0.5 − 0 0.5 1 b/sr] μ [ E 2 − 1 − 0 W=1697 MeV preliminary θ cos 1 − 0.5 − 0 0.5 1 b/sr] μ [ E 1 − 0.5 − 0 0.5 W=1730 MeV preliminary θ cos 1 − 0.5 − 0 0.5 1 b/sr] μ [ E 0.5 − 0 0.5 W=1762 MeV preliminary θ cos 1 − 0.5 − 0 0.5 1 b/sr] μ [ E 0.5 − 0 0.5 W=1794 MeV preliminary θ cos 1 − 0.5 − 0 0.5 1 b/sr] μ [ E 0.5 − 0 0.5 W=1825 MeV preliminary θ cos 1 − 0.5 − 0 0.5 1 b/sr] μ [ E 0.5 − 0 0.5 W=1855 MeV preliminary θ cos 1 − 0.5 − 0 0.5 1 b/sr] μ [ E 0 0.5 1 1.5 W=1522 MeV preliminary θ cos 1 − 0.5 − 0 0.5 1 b/sr] μ [ E 1.5 − 1 − 0.5 − 0 0.5 W=1629 MeV preliminary ] W=1730 MeV θ cos 1 − 0.5 − 0 0.5 1 b/sr] μ [ E 0 0.5 1 1.5 W=1484 MeV preliminary (b) θ cos 1 − 0.5 − 0 0.5 1 b/sr] μ [ E 0 0.5 1 1.5 W=1522 MeV preliminary θ cos 1 − 0.5 − 0 0.5 1 b/sr] μ [ E 0.5 − 0 0.5 1 W=1558 MeV preliminary θ cos 1 − 0.5 − 0 0.5 1 b/sr] μ [ E 1 − 0 1 W=1594 MeV preliminary θ cos 1 − 0.5 − 0 0.5 1 b/sr] μ [ E 1.5 − 1 − 0.5 − 0 0.5 W=1629 MeV preliminary θ cos 1 − 0.5 − 0 0.5 1 b/sr] μ [ E 3 − 2 − 1 − 0 W=1663 MeV preliminary θ cos 1 − 0.5 − 0 0.5 1 b/sr] μ [ E 2 − 1 − 0 W=1697 MeV preliminary θ cos 1 − 0.5 − 0 0.5 1 b/sr] μ [ E 1 − 0.5 − 0 0.5 W=1730 MeV preliminary θ cos 1 − 0.5 − 0 0.5 1 b/sr] μ [ E 0.5 − 0 0.5 W=1762 MeV preliminary θ cos 1 − 0.5 − 0 0.5 1 b/sr] μ [ E 0.5 − 0 0.5 W=1794 MeV preliminary θ cos 1 − 0.5 − 0 0.5 1 b/sr] μ [ E 0.5 − 0 0.5 W=1825 MeV preliminary θ cos 1 − 0.5 − 0 0.5 1 b/sr] μ [ E 0.5 − 0 0.5 W=1855 MeV preliminary θ cos 1 − 0.5 − 0 0.5 1 b/sr] μ [ E 0 0.5 1 1.5 W=1484 MeV preliminary (b) W=1594 MeV θ cos 1 − 0.5 − 0 0.5 1 b/sr] μ [ E 0.5 − 0 0.5 1 W=1558 MeV preliminary θ cos 1 − 0.5 − 0 0.5 1 b/sr] μ [ E 3 − 2 − 1 − 0 W=1663 MeV preliminary r] 0 5 W=1762 MeV b/sr] μ [ E 1 b/sr] μ [ E W=1663 MeV b/sr] μ [ E θ cos 1 − 0.5 − 0 0.5 1 b/sr] μ [ E 1 − 0 1 preliminary W=1697 MeV b/sr] μ [ E b/sr] μ [ E θ cos 1 − 0.5 − 0 0.5 1 b/sr] μ [ E 2 − 1 − 0 W 1697 MeV preliminary W=1794 MeV θ cos 1 − 0.5 − 0 0.5 1 b/sr] μ [ E 0.5 − 0 0.5 preliminary W=1855 MeV b/sr] μ [ E 0 b/sr] μ [ E 0 θ cos 1 − 0.5 − 0 0.5 1 b/sr] μ [ E 0.5 − 0 0.5 W 1794 MeV preliminary 6 6 http://doi.org/10.1051/epjconf/202024103006 EPJ Web of Conferences 241, 0300 (2020) 6 W [MeV] 1800 1900 2000 /ndf 2 χ 0 5 10 15 =1 max L =2 max L =3 max L =4 max L [MeV] γ E 1200 1400 1600 preliminary (a) Figure 4: The beam-asymmetry ˇΣ data from the CBELSA/TAPS- collaboration [18, 19], with only statistical error, was fitted using the expansion into Legendre mo- ments given in equations (5,10) and truncating the expansion at ℓmax = 1, . ∗e-mail: wunderlich@hiskp.uni-bonn.de . . , 4. (a) The resulting χ2/ndf values for fits with different or- ders ℓmax as a function of the cen- ter of mass energy W and photon LAB-energy Eγ are shown. (b) 6 out of 11 selected angular dis- tributions of ˇΣ (black points) are plotted together with curves corre- sponding to fits with different ℓmax (solid lines), starting at W= 1748 MeV up to 2045 MeV. (color on- line) Θ cos 1 − 0.5 − 0 0.5 1 b/sr] μ [ Σ 0 0.2 0.4 W=1748 MeV preliminary (b) Θ cos 1 − 0.5 − 0 0.5 1 b/sr] μ [ Σ 0 0.1 0.2 0.3 W=1812 MeV preliminary Θ cos 1 − 0.5 − 0 0.5 1 b/sr] μ [ Σ 0 0.1 0.2 W=1873 MeV preliminary Θ cos 1 − 0.5 − 0 0.5 1 b/sr] μ [ Σ 0.1 − 0 0.1 0.2 W=1932 MeV preliminary b/sr] μ [ Σ 0 0.1 0.2 W=1989 MeV preliminary b/sr] μ [ Σ 0.1 0.2 W=2045 MeV preliminary W [MeV] 1800 1900 2000 /ndf 2 χ 0 5 10 15 =1 max L =2 max L =3 max L =4 max L [MeV] γ E 1200 1400 1600 preliminary (a) Figure 4: The beam-asymmetry ˇΣ data from the CBELSA/TAPS- collaboration [18, 19], with only statistical error, was fitted using the expansion into Legendre mo- ments given in equations (5,10) and truncating the expansion at ℓmax = 1, . . . , 4. (a) The resulting χ2/ndf values for fits with different or- ders ℓmax as a function of the cen- ter of mass energy W and photon LAB-energy Eγ are shown. (b) 6 out of 11 selected angular dis- tributions of ˇΣ (black points) are plotted together with curves corre- sponding to fits with different ℓmax (solid lines), starting at W= 1748 MeV up to 2045 MeV. ∗e-mail: wunderlich@hiskp.uni-bonn.de (color on- line) /ndf 2 χ (a) Θ cos 1 − 0.5 − 0 0.5 1 b/sr] μ [ Σ 0 0.2 0.4 W=1748 MeV preliminary (b) Θ cos 1 − 0.5 − 0 0.5 1 b/sr] μ [ Σ 0 0.1 0.2 0.3 W=1812 MeV preliminary b/sr] μ [ Σ 0.1 0.2 W=1873 MeV eliminary b/sr] μ [ Σ 0.1 0.2 W=1932 MeV eliminary Θ cos 1 − 0.5 − 0 0.5 1 b/sr] μ [ Σ 0 0.2 0.4 W=1748 MeV preliminary (b) Θ cos 1 − 0.5 − 0 0.5 1 b/sr] μ [ Σ 0 0.1 0.2 0.3 W=1812 MeV preliminary Θ cos 1 − 0.5 − 0 0.5 1 b/sr] μ [ Σ 0 0.1 0.2 W=1873 MeV preliminary Θ cos 1 − 0.5 − 0 0.5 1 b/sr] μ [ Σ 0.1 − 0 0.1 0.2 W=1932 MeV preliminary b/sr] μ [ Σ 0 0.1 0.2 W=1989 MeV preliminary b/sr] μ [ Σ 0 0.1 0.2 W=2045 MeV preliminary Θ cos 1 − 0.5 − 0 0.5 1 b/sr] μ [ Σ 0 0.2 0.4 W=1748 MeV preliminary (b) Θ cos 1 − 0.5 − 0 0.5 1 b/sr] μ [ Σ 0 0.1 0.2 0.3 W=1812 MeV preliminary Θ cos 1 − 0.5 − 0 0.5 1 b/sr] μ [ Σ 0 0.1 0.2 W=1873 MeV preliminary Θ cos 1 − 0.5 − 0 0.5 1 b/sr] μ [ Σ 0.1 − 0 0.1 0.2 W=1932 MeV preliminary Θ cos 1 − 0.5 − 0 0.5 1 b/sr] μ [ Σ 0.1 − 0 0.1 0.2 W=1989 MeV preliminary Θ cos 1 − 0.5 − 0 0.5 1 b/sr] μ [ Σ 0 0.1 0.2 W=2045 MeV preliminary 7 Θ cos 1 − 0.5 − 0 0.5 1 b/sr] μ [ Σ 0 0.2 0.4 W=1748 MeV preliminary (b) W=1873 MeV Θ cos 1 − 0.5 − 0 0.5 1 b/sr] μ [ Σ 0 0.1 0.2 0.3 W=1812 MeV preliminary W=1932 MeV W=1748 MeV b/sr] μ [ Σ 0 (b) (b) W=1932 MeV W=1873 MeV Θ cos 1 − 0.5 − 0 0.5 1 b/sr] μ [ Σ 0 0.1 0.2 W=1873 MeV preliminary W=1989 MeV Θ cos 1 − 0.5 − 0 0.5 1 b/sr] μ [ Σ 0.1 − 0 0.1 0.2 W=1932 MeV preliminary W=2045 MeV b/sr] μ [ Σ W=1989 MeV W=2045 MeV Θ cos 1 − 0.5 − 0 0.5 1 b/sr] μ [ Σ 0 0.1 0.2 W=2045 MeV preliminary b/sr] μ [ Σ b/sr] μ [ Σ EPJ Web of Conferences 241, 0300 (2020) NSTAR 2019 6 http://doi.org/10.1051/epjconf/202024103006 References of Bonn (2019). [10] A. Gersten, Nucl. Phys. B 12, p. 537 (1969). [1] A. V. Anisovich, R. Beck, E. Klempt, V. A. Nikonov, A. V. Sarantsev and U. Thoma, Eur. Phys. J. A 48, 15 (2012). [11] G. F. Chew, M. L. Goldberger, F. E. Low, and Y. Nambu, Phys. Rev. 106, 1345 (1957). [12] A. M. Sandorfi, S. Hoblit, H. Kamano, T. -S. H. Lee, J. Phys. G 38, 053001 (2011). [2] D. Ronchen et al., Eur. Phys. J. A 49, 44 (2013) doi:10.1140/epja/i2013-13044-5 [arXiv:1211.6998 [nucl-th]]. [13] W.-T. Chiang and F. Tabakin, Phys. Rev. C 55, 2054 (1997). [3] M. Doring, C. Hanhart, F. Huang, S. Krewald and U.-G. Meißner, Phys. Lett. B 681, 26 (2009) doi:10.1016/j.physletb.2009.09.052 [arXiv:0903.1781 [nucl-th]]. [14] Y. Wunderlich, F. Afzal, A. Thiel and R. Beck, Eur. Phys. J. A 53, no. 5, 86 (2017). [15] L. Tiator, AIP Conf. Proc. 1432, 162 (2012). [16] A. S. Omelaenko, Sov. J. Nucl. Phys. 34, 406 (1981). [4] D. Drechsel, S. S. Kamalov and L. Tiator, Eur. Phys. J. A 34, 69 (2007). [17] Y. Wunderlich, R. Beck and L. Tiator, Phys. Rev. C 85, 055203 (2014). [5] R. A. Arndt, W. J. Briscoe, I. I. Strakovsky and R. L. Workman, Phys. Rev. C 74, 045205 (2006). [18] F. Afzal, "Measurement of the beam and helicity asymmetries in the reactions γp →pπ0 and γp →pη", url: http://hss.ulb.uni-bonn.de/2019/5551/5551.htm, PhD-thesis, University of Bonn (2019). [6] A. V. Anisovich et al., Eur. Phys. J. A 52, no. 9, 284 (2016) doi:10.1140/epja/i2016-16284-9 [arXiv:1604.05704 [nucl-th]]. [19] F. Afzal et al., "Precise beam asymmetry Σ data for γp →ηp in the pη′ threshold region", in preparation (2019). [7] R. J. Eden, P. V. Landshoff, D. I. Olive and J. C. Polk- inghorne, "The analytic S-matrix", Cambridge Univer- sity Press, (1966). [20] F. Afzal [CBELSA/TAPS Collaboration], "Recent results from the CBELSA/TAPS experiment at ELSA", contribution to NSTAR2019 (2019). [8] J. E. Bowcock and H. Burkhardt, Rep. Prog. Phys. 38, 1099 (1975). [9] Y. Wunderlich, "The complete experiment problem of pseudoscalar meson photoproduction in a trun- cated partial wave analysis", url: http://hss.ulb.uni- bonn.de/2019/5353/5353.htm, PhD-thesis, University [21] S. Ceci, M. Doring, C. Hanhart, S. Krewald, U.- G. Meissner and A. Svarc, Phys. Rev. C 84, 015205 (2011). 8
https://openalex.org/W4322629398
https://abacus.universidadeuropea.com/bitstream/11268/11846/2/Lado_Cerpa_IJMS_2023.pdf
English
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Coarse-Grained Molecular Dynamics of pH-Sensitive Lipids
International journal of molecular sciences
2,023
cc-by
7,978
Isabel Lado-Touriño * and Arisbel Cerpa-Naranjo Engineering Department, School of Architecture, Engineering and Design, Universidad Europea de Madrid, 28670 Villaviciosa de Odón, Spain * Correspondence: misabel.lado@universidadeuropea.es Abstract: pH-sensitive lipids represent a class of lipids that can be protonated and destabilized in acidic environments, as they become positively charged in response to low-pH conditions. They can be incorporated into lipidic nanoparticles such as liposomes, which are able to change their proper- ties and allow specific drug delivery at the acidic conditions encountered in some pathological mi- croenvironments. In this work, we used coarse-grained molecular-dynamic simulations to study the stability of neutral and charged lipid bilayers containing POPC (1-palmitoyl-2-oleoyl-sn-glycero-3- phosphocholine) and various kinds of ISUCA ((F)2-(imidazol-1-yl)succinic acid)-derived lipids, which can act as pH-sensitive molecules. In order to explore such systems, we used a MARTINI- derived forcefield, previously parameterized using all-atom simulation results. We calculated the average area per lipid, the second-rank order parameter and the lipid diffusion coefficient of both lipid bilayers made of pure components and mixtures of lipids in different proportions, under neu- tral or acidic conditions. The results show that the use of ISUCA-derived lipids disturbs the lipid bilayer structure, with the effect being particularly marked under acidic conditions. Although more- in depth studies on these systems must be carried out, these initial results are encouraging and the lipids designed in this research could be a good basis for developing new pH-sensitive liposomes. Keywords: pH-sensitive lipids; coarse-grained; molecular dynamics Citation: Lado-Touriño, I.; Cerpa-Naranjo, A. Coarse-Grained Molecular Dynamics of pH-Sensitive Lipids. Int. J. Mol. Sci. 2023, 24, 4632. https://doi.org/10.3390/ijms24054632 Academic Editors: Samuel De Visser and M. Natália D. S. Cordeiro Received: 20 January 2023 Revised: 20 February 2023 Accepted: 25 February 2023 Published: 27 February 2023 1. Introduction 2023, 24, 4632 2 of 16 Liposomes are usually formulated using modified natural diacyl-chain phospholipid components, such as phosphatidylethanolamine (PE), phosphatidylcholine (PC), phos- phatidylserine (PS) or oleic acid (OA) [18], among others. The phospholipid membrane, which forms the lipid bilayer of a liposomal structure, consists of two clearly differenti- ated parts: a hydrophobic tail and a hydrophilic head. Although there are numerous chemical structures that can act as pH-sensitive hydrophilic headgroups, in this work, imidazole-derived molecules were chosen for the design of new pH-sensitive lipids, as they can protonate even in response to weakly acidic pH [19,20]. Specifically, Provent et al. [21] synthesized one of such molecules, ISUCA ((F)2-(imidazol-1-yl)succinic acid) and used this new imidazole derivative as a probe agent to measure the extracellular pH in C6 cell gliomas in rat brains. Due to its excellent response to pH changes, we selected the ISUCA molecule to build the headgroups of our new pH-sensitive lipids. g p p p Among the different methods that are successfully applied to the study of lipid bi- layers and liposomes, notable are those based on computational approaches. Thus, all- atoms simulations have been employed for many years to study and understand a wide variety of properties related to these systems [21–24]. However, this kind of method is very compute-intensive and its use is limited to small systems. To study large-scale struc- tures or processes that need very long time scales to complete, using other type of simu- lation approaches is mandatory. Coarse-grained (CG) methods seems to be a good alter- native. They involve grouping together several atoms into single sites, the so-called beads, and significantly reduce the number of interactions between particles that need to be cal- culated and hence, computational cost. Thus, many properties of interest in mesoscopic- scale systems can be studied using CG simulations [25–27]. In conclusion, CG models al- low for studies of larger systems for longer times, compared with all-atom models. They are fast enough to simulate processes occurring even at a nanosecond time scale. For all these reasons, the CG approach has experienced huge success in recent years. Several dif- ferent CG models have been developed and applied to the study of diverse atomistic sys- tems [28–31]. Notable among these is the MARTINI forcefield [28]. 1. Introduction Citation: Lado-Touriño, I.; Cerpa-Naranjo, A. Coarse-Grained Molecular Dynamics of pH-Sensitive Lipids. Int. J. Mol. Sci. 2023, 24, 4632. https://doi.org/10.3390/ijms24054632 Academic Editors: Samuel De Visser and M. Natália D. S. Cordeiro Received: 20 January 2023 Revised: 20 February 2023 Accepted: 25 February 2023 Published: 27 February 2023 Nanoparticles that are sensitive to a variety of physical and chemical stimuli have potentially important applications in drug delivery, and currently their development is an area of intensive research [1–3]. Although there are many different kinds of stimuli- sensitive nanoparticles, such as those based on polymers, colloids or liquid crystals, it is worth highlighting among them liposomes, spherical-shaped vesicles that consist mainly of phospholipids forming a lipid bilayer surrounding an aqueous core [4]. They show many advantages over other types of nanostructures, such as easy production methods, good control of liposome size and ease of charge with high drug/lipid ratios. They are usually made of lipids that mimic biological membranes [5]. Thus, they can be used as simple models to understand and characterize real cell membranes, which are sometimes difficult to study. Different activation methods have been used to deliver drugs contained inside stimuli-sensitive liposomes in a controlled manner, such as light, strain, pH, heat or magnetic and electric fields, among others [6–12]. Specifically, pH-sensitive liposomes are able to respond to pH changes. Their structures contain functional groups that proto- nate/deprotonate as a function of pH value, giving rise to morphological changes in their lipid bilayers. Thus, alteration in pH (as in tumor tissues, which present low pH due to an increased glycolysis, which stimulates the production of lactic acid [13]), can cause release of the entrapped drug, due to instability of the bilayers when changing their struc- ture [14–17]. This pH change in cancer cells is a key factor for the use of these liposomes in cancer treatment. Academic Editors: Samuel De Visser and M. Natália D. S. Cordeiro Academic Editors: Samuel De Visser and M. Natália D. S. Cordeiro Copyright: © 2023 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/license s/by/4.0/). www.mdpi.com/journal/ijms Int. J. Mol. Sci. 2023, 24, 4632. https://doi.org/10.3390/ijms24054632 Int. J. Mol. Sci. 1. Introduction This forcefield has been successfully used to study different biological systems such as lipids [32], liposomes [33], proteins [34], carbohydrates [35] and amino acids [36]. In this work, we report novel types of lipids derived from the ISUCA molecule and use them to build models of pure-lipid bilayers (ISUCA and POPC-(1-palmitoyl-2-oleoyl- sn-glycero-3-phosphocholine)), as well as mixed-lipid bilayers made of POPC and ISUCA-derived lipids. We studied these new bilayers under neutral and acidic conditions, using CG molecular dynamics (CGMD).We explored their structural stability by means of calculation of some characteristic parameters of the lipids, such as the average area per lipid, hydrophobic thickness, second-rank order parameters and diffusion coefficients. Bearing in mind that the ultimate goal of our research is the design and synthesis of new pH-sensitive liposomes made of this kind of lipid, we think that we can start our study through the simulation of the structural and dynamical properties, under different pH- conditions, of smaller and simpler models, such as those presented herein. If the results are satisfactory, the best structures may be subsequently used to produce liposomes in the laboratory. 2.1. Structural Properties: Equlilibrium Area per Lipid, Hydrophobic Thickness and Second-Rank Order Parameter 2. Results and Discussion The characterization of the lipid bilayers was carried out by computing structural and dynamical properties from the CGMD trajectory obtained from the simulations. The results for both kind of properties are presented separately in the following sections: 2.1. Structural Properties: Equlilibrium Area per Lipid, Hydrophobic Thickness and Second-Rank Order Parameter The equilibrium area per lipid (APL) and the hydrophobic thickness of all lipid bi- layers considered in this study, are shown in Table 1. The composition of each system is Int. J. Mol. Sci. 2023, 24, 4632 3 of 16 described in the Materials and Methods section, as detailed below. Both properties pro- vide information about the structure of the lipid bilayer. If, for some reason, this structure changes, this should be reflected in the values of APL and hydrophobic thickness. described in the Materials and Methods section, as detailed below. Both properties pro- vide information about the structure of the lipid bilayer. If, for some reason, this structure changes, this should be reflected in the values of APL and hydrophobic thickness. Table 1. APL and hydrophobic thickness of bilayers. The calculated volumes of the lipid head- groups are also shown in the last two rows. Model APL (Å2) Hydrophobic Thickness (Å) POPC 67.0 ± 0.1 (exp: 62–68) 1 14.8 ± 1.2 ISUCA-2 Pal 70.3 ± 0.2 15.7 ± 0.4 ISUCA-2 Ol 73.1 ± 0.1 14.4 ± 0.7 ISUCA-Pal Ol 71.3 ± 0.1 14.5 ± 0.5 50:50 POPC/ISUCA-2 Pal 70.3 ± 0.1 14.8 ± 0.6 50:50 POPC/ISUCA-2 Ol 70.4 ± 0.1 11.7 ± 0.4 50:50 POPC/ISUCA-Pal-Ol 70.4 ± 0.2 12.9 ± 0.8 90:10 POPC/ISUCA ISUCA-Pal-Ol 70.4 ± 0.1 13.1 ± 0.5 90:10 POPC/ISUCA+-Pal-Ol (protonated ISUCA) 70.8 ± 0.1 12.5 ± 0.5 Headgroup Volume (Å3) POPC 170 ISUCA 158 1 Depending on the hydration level of the bilayer. Interaction of head groups with surrounding wa- ter influences APL. Table 1. APL and hydrophobic thickness of bilayers. The calculated volumes of the lipid head- groups are also shown in the last two rows. The APL is defined as the area of the surface bilayer (perpendicular to the bilayer) divided by the number of lipids in each monolayer. For instance, the value for POPC (67 Å2) is obtained by multiplying the dimensions of its surface (see Figure 1: 62.4 Å × 62.4 Å) by the number of lipids in the monolayer (58). It is an important property of biological and synthetic membranes. 2. Results and Discussion In more ordered systems, the lipids are more densely packed, which results in smaller distances between them and lower APL values. Thus, it is lower for more ordered systems and also for lipids with smaller headgroups [37,38]. The APL of POPC calculated in this work, is close to the experimental value of 68 Å2 at high hydration levels [39,40]. The number of water molecules per lipid is 63.4 in our models, which means an elevated hydration level. To rule out the effect of lipid size on the APL (as smaller lipids usually have lower APL values), the headgroup volume was calculated for both kinds of lipids (POPC and ISUCA-derived lipids), and is shown in the last two rows of Table 1. Hydrophobic tails are not taken into account, as they are the same for all lipids, that is to say, what differentiates POPC from ISUCA-derived lipids is only the headgroup. Alt- hough the ISUCA headgroup is smaller, the APL of ISUCA-derived lipids is larger, which could indicate less-structured bilayers. The increase in APL values is observed in both pure and mixed bilayers, although it is much more accentuated in pure systems (see first four rows in Table 1). Mixed bilayers present APL values falling between those of the pure bilayers. Furthermore, the effect of introducing an unsaturated fatty acid in the lipid tails, results in an increase in APL values. The ISUCA-2 Ol bilayer, containing two unsaturated chains in its structure, present the highest value of all (73.1 Å2). This result is well-known and has been found by many other authors [41–44] in different lipid bilayers, as unsatu- rated chains give rise to less-ordered structures, which in turn leads to higher APL values. All mixed bilayers present APL values lower than that of pure POPC. This could indicate that, when ISUCA-derived lipids are introduced into a POPC membrane, its structure is somewhat disrupted and its disorder increases. Protonation of the structure leads to a slight increase in APL. The hydrophobic thickness, the thickness of the hydrocarbon tails, follows the same trend as that of the APL values. For clarity, Figure 2 shows a schematic representation of a lipid bilayer, indicating how hydrophobic thickness is defined. It is well known that ordered structures present higher hydrophobic-thickness values, as they are more rigid Int. J. Mol. Sci. 2023, 24, 4632 4 of 16 4 of 16 and longer [39,41]. 2. Results and Discussion Unsaturated chains decrease hydrophobic thickness. In general, bi- layers containing ISUCA-derived lipids, both pure or mixed, present lower hydrophobic thicknesses. The only exception is ISUCA-2 Pal (see second row of Table 1). This could be because it is the only lipid in this study with two saturated hydrocarbon chains in its structure, which are longer than unsaturated chains. The effect of concentration and pro- tonation on the hydrophobic thickness is clearly seen in the last three rows of the table (only POPC/ISUCA-Pal-Ol bilayers were considered for this study). Increasing the ISUCA-derived lipid concentration (pure POPC: 14.8 Å; 90% POPC: 13.1 Å; 50% POPC: 12.9 Å) or protonating the imidazole ring (12.5 Å, compare the last two rows of Table 1 for lipid bilayers containing 90% POPC) shortens the hydrophobic thickness, which points, once again, to more disordered structures. However, hydrophobic-thickness results must be taken with caution, as the calculated standard deviations of the data are high. g As an example, Figure 1 shows the top view (normal for the lipid bilayer) of two of the bilayers studied (pure POPC and ISUCA-2 Pal) at the end of the simulation. For clarity, water molecules, located above and below the lipid bilayer, are hidden. As can be seen, the pure POPC bilayer shows a more regular and ordered distribution of lipids, in accord- ance with APL and hydrophobic-thickness results. ISUCA-derived lipids heads tend to agglomerate, resulting in more disorganized structures. Figure 1. Top view of pure POPC and ISUCA-2 Pal lipid bilayers. Grey balls represent hydrocarbon tails. Figure 1. Top view of pure POPC and ISUCA-2 Pal lipid bilayers. Grey balls represent hydrocarbon tails. 5 of 16 Int. J. Mol. Sci. 2023, 24, 4632 Figure 2. Schematic representation of a lipid bilayer and hydrophobic thickness. Figure 2. Schematic representation of a lipid bilayer and hydrophobic thickness. The second-rank order parameter, P2, is another way of quantifying the packing and ordering of lipids. It represents a measure of the alignment of hydrocarbon tails with the bilayer normal. P2 is defined as P2 = <1/2 (3cos2θ − 1)> (1) (1) with θ the angle between the direction of a bond (or a vector) and bilayer normal. Perfect alignment of bonds of the hydrocarbon tails with the lipid bilayer is indicated by P2 = 1, and a random orientation with P2 = 0 (Figure 3). 2. Results and Discussion In this work, two different P2 parameters were defined and calculated: the bond order parameter (P2b), for consecutive tail bonds, and the tail order parameter (P2t), for the vector joining beads C1 and C4 of the hydrocar- bon tail (see Figure 4). Figure 3. Relationship between P2 and degree of order of a lipid bilayer. Figure 3. Relationship between P2 and degree of order of a lipid bilayer. 6 of 16 Int. J. Mol. Sci. 2023, 24, 4632 Figure 4. Numbering of beads used to calculate order parameters. Figure 4. Numbering of beads used to calculate order parameters. Figures 5 and 6 show the calculated values of both order parameters, P2b and P2t, of the pure bilayers considered in this study. It must be noted that the results of each indi- vidual hydrocarbon chain (palmitic- and oleic-acid-derived chains) are presented sepa- rately for all lipids. Figure 5. P2b for pure lipids: pal = palmitic hydrocarbon chain, ol = oleic hydrocarbon chain. Figure 5. P2b for pure lipids: pal = palmitic hydrocarbon chain, ol = oleic hydrocarbon chain. 7 of 16 Int. J. Mol. Sci. 2023, 24, 4632 7 of 16 Figure 6. P2t for pure lipids: pal = palmitic hydrocarbon chain, ol = oleic hydrocarbon chain. It is well-known, and also found in this work, that the order parameter decreases with the distance from the headgroup (c1-c2 > c2-c3 > c3-c4), with the bonds closest to the hydrophilic head being, more ordered than the bonds farther apart. The POPC P2b values of these bonds are around 0.3. These results agree with typical experimental values found in reference [45]. The calculated average P2t for POPC (average value for the two hydro- phobic chains) has a value of 0.31, which is close to the result found by other authors [46]. In the same way, P2b parameters are similar to those calculated in reference [47]. Moreover, the P2 of the saturated hydrocarbon chains (pal) are greater than those of the unsaturated chains (ol), which indicates a more regular packing of the former. This result applies to both P2b and P2t. In addition, in all systems studied in this work, the ISUCA-derived lipids have a lower degree of order, as evidenced by their smaller P2 values (note the decreasing trend of the P2 values from left to right in Figures 5 and 6). As expected, the unsaturated chains show smaller P2 values. Figures 7–9 depict results for 50:50 lipid mixtures. To enable a comparison between pure and mixed bilayers, P2 values of pure lipids are also shown in these figures. Figure 7. P2t and P2b for POPC/ISUCA-Pal Pal mixtures. Figure 7. P2t and P2b for POPC/ISUCA-Pal Pal mixtures. Int. J. Mol. Sci. 2023, 24, 4632 8 of 16 8 of 16 Figure 8. P2t and P2b for POPC/ISUCA-Pal Ol mixtures. Figure 8. P2t and P2b for POPC/ISUCA-Pal Ol mixtures. Figure 9. P2t and P2b for POPC/ISUCA-Ol Ol mixtures. Figure 9. P2t and P2b for POPC/ISUCA-Ol Ol mixtures. POPC/ISUCA mixtures follow the same trend as that of bilayers made of pure lipids: a smaller-order parameter for bonds farther away from headgroups (c1-c2 > c2-c3 > c3-c4), and unsaturated chains. The most remarkable result shown in these figures is the fact that that both P2t and P2b parameters of pure-lipid bilayers are clearly larger than those of their respective mixtures. This clearly indicate that mixed bilayers are less ordered than pure bilayers, as previously found by APL and hydrophobic-thickness calculations. y p y y y p Finally, the effect of lipid-bilayer composition, as well as that of protonation of the ISUCA moiety in POPC/ISUCA-Pal Ol mixtures, is shown in Figure 10. Finally, the effect of lipid-bilayer composition, as well as that of protonation of the ISUCA moiety in POPC/ISUCA-Pal Ol mixtures, is shown in Figure 10. 9 of 16 Int. J. Mol. Sci. 2023, 24, 4632 Figure 10. P2t (top) and P2b (bottom) for POPC/ISUCA Pal Ol mixtures of varying composition. Figure 10. P2t (top) and P2b (bottom) for POPC/ISUCA Pal Ol mixtures of varying composition. As expected, both P2t and P2b parameters decrease when the ISUCA-derived lipid concentration increases (0% > 10% > 50%). What is worth noting is the effect of protonation (marked with a plus sign in Figure 10). A noticeable reduction in both the P2t and P2b pa- rameters is observed (compare values for protonated and unprotonated 90 POPC + 10 ISUCA Pal Ol bilayers), which indicates a less-ordered structure in the protonated case. This result is very promising in terms of accomplishing our goals, the design of new pH- sensitive liposomes, as it shows that a pH change could lead to a variation in the lipid bilayer structure, towards a more disordered state. In short, the introduction and protonation of ISUCA-derived lipids in a POPC bilayer causes a significant increase in disorder, as indicated by the values of the three structural parameters, APL, hydrophobic thickness and P2, calculated in this work. 2.2. Dynamic Properties: Diffusion Coefficient 2.2. Dynamic Properties: Diffusion Coefficient In addition to characterizing the structural parameters of these new membranes, the dynamics of the lipids was also studied by calculating the lipid lateral-diffusion coeffi- cient, D. D can also provide information about the structure and ordering of the mem- brane. It is related to lipid mobility inside each monolayer. Thus, lipid lateral diffusion reflects the translational motion of lipids along the monolayer. Highly fluctuating and mobile lipids are indicative of disorder. The packing of lipids and how they are arranged in the bilayer are important properties that seem to strongly affect the lateral-diffusion coefficients [48]. In general, a closer packing of the lipids and well-ordered bilayers results in a decrease in D and reduced lateral diffusivity. D was derived from the slope of the mean squared displacement (MSD) of lipids versus time plots, assuming Fickian diffusion: 𝑀𝑀𝑀𝑟𝑡𝛥𝛥𝑟𝑟𝑡𝐷𝑡𝑁 𝑀𝑀𝑀𝑀𝑀𝑀= ෍ൻ൫𝑟𝑟𝑖𝑖(𝑡𝑡+ 𝛥𝛥𝛥𝛥) −𝑟𝑟𝑟𝑟(𝑡𝑡)൯ 2 ൿ= 4 · 𝐷𝐷· 𝑡𝑡 𝑁𝑁 𝑖𝑖=1 (2) (2) where vector ri(t) is the position of the ith bead at time t, and ri(t + Δt) the position of the same bead, an interval Δt later. The calculated D values are shown in Table 2. Int. J. Mol. Sci. 2023, 24, 4632 10 of 16 Table 2. Calculated D of the different bilayers studied. Table 2. Calculated D of the different bilayers studied. Model D (×07 cm2·s−1) POPC 2.2 (exp.: 1.9) ISUCA-2 Pal 3.3 ISUCA-2 Ol 5.7 ISUCA-Pal Ol 5.6 50:50 POPC/ISUCA-2 Pal 3.0 50:50 POPC/ISUCA-2 Ol 3.4 50:50 POPC/ISUCA-Pal-Ol 3.4 90:10 POPC/ISUCA ISUCA-Pal-Ol 2.4 90:10 POPC/ISUCA+-Pal-Ol 2.6 (protonated ISUCA) The calculated lateral D of all lipid bilayers are of the order of 10−7 cm2·s−1, typical for lateral-diffusion rates of lipids in the fluid phase [49]. The POPC diffusion coefficient is close to the experimental result [50]. The diffusion coefficients of pure systems are larger for ISUCA-derived lipid bilayers (compare the first four rows of Table 2) and a noticeable increase is seen when unsaturated chains are introduced into the lipid composition (2 Pal: 3.3; Pal Ol: 5.6; Ol Ol: 5.7). The ISUCA-2 Pal system present a diffusion coefficient that is larger than that of pure POPC (2.2), but lower than those of the other two mixed bilayers. These results are in accordance with results found in previous investigations [46], which, moreover, established a relationship between APL and D. Apajalahti et al. 2.2. Dynamic Properties: Diffusion Coefficient [51] also found a clear positive correlation between D values and disordered structures: the more ordered the system is, the slower the diffusion. Once again, our results seem to indicate that ISUCA and oleic acid help to disrupt lipid bilayers, making them more fluid, disordered and dy- namic. Mixed bilayers present D values falling between those of pure bilayers. The greater the amount of ISUCA, the greater the D value (pure POPC: 2.2; 90% POPC: 2.4; 50% POPC: 3.4): the protonated structure shows a slightly higher D value (2.6) than that of the unpro- tonated system (2.4), although the effect of protonation and hydrocarbon-chain composi- tion on D is less accentuated in mixed systems than in pure systems. Although lipid bilayers are not the ultimate goal of our research, we think that the use of such simpler models can be useful to study the behavior of more complex systems, such as liposomes, under different pH conditions. We have found that by using ISUCA- derived headgroups, changing the composition of the hydrocarbon tails and lowering the pH, all parameters calculated (APL, P2, D, and hydrophobic thickness) point to an increase in disorder in the lipid bilayers. This, although not definitive, could be a good starting point to design new pH-sensitive liposomes made of this kind of lipids. Future work must focus on varying the proportions of the three ISUCA derivatives, different degrees of pro- tonation and, of course, the CGMD of liposomes, incorporating the most promising com- ponents found in our lipid-bilayer simulations. 3. Materials and Methods The models used to represent the lipid bilayers, as well as the computational proce- dure followed to calculate the properties discussed in the previous section, are presented below: 3.1. Models The chemical structures used to construct the lipid bilayers are shown in Figure 9. We designed three different ISUCA-derived lipids: they all consisted of a hydrophilic Int. J. Mol. Sci. 2023, 24, 4632 11 of 16 11 of 16 head (ISUCA) and two hydrophobic tails made of hydrocarbon chains derived from pal- mitic acid (ISUCA-2 Pal), oleic acid (ISUCA-2 Ol) or both (ISUCA-Pal-Ol). The POPC structure is also shown in Figure 11. Different lipid bilayers were then built from lipids shown in Figure 11: pure lipid bilayers (POPC and ISUCA-derived lipids), as well as their mixtures in different propor- tions. Although we are mainly interested in mixed systems, pure bilayers were used in this study for the sake of comparability. The composition of all models considered in this study, is shown in Table 3. To study the effect of concentration and protonation, only ISUCA-Pal Ol structures were used. Table 3. Composition of the bilayers studied by CGMD. Pure Lipids Mixtures POPC 50:50 POPC/ISUCA-2 Pal ISUCA-2 Pal 50:50 POPC/ISUCA-2 Ol ISUCA-2 Ol 50:50 POPC/ISUCA-Pal-Ol ISUCA-Pal Ol 90:10 POPC/ISUCA-Pal-Ol 90:10 POPC/ISUCA+-Pal-Ol (protonated ISUCA) Figure 11. Chemical structures of POPC and ISUCA-derived lipids used in the construction of the lipid bilayers. The lipids were represented by beads, as shown in Figure 12. This bead representa- tion is typical of the MARTINI forcefield and is well documented in reference [28]. The Martini forcefield was chosen to calculate bead interactions, and has been successfully applied to the study of numerous systems, including both liposomes [33] and lipid bi- Table 3. Composition of the bilayers studied by CGMD. Table 3. Composition of the bilayers studied by CGMD. Table 3. Composition of the bilayers studied by CGMD. Pure Lipids Mixtures POPC 50:50 POPC/ISUCA-2 Pal ISUCA-2 Pal 50:50 POPC/ISUCA-2 Ol ISUCA-2 Ol 50:50 POPC/ISUCA-Pal-Ol ISUCA-Pal Ol 90:10 POPC/ISUCA-Pal-Ol 90:10 POPC/ISUCA+-Pal-Ol (protonated ISUCA) Figure 11. Chemical structures of POPC and ISUCA-derived lipids used in the construction of the lipid bilayers. Figure 11. Chemical structures of POPC and ISUCA-derived lipids used in the construction of the lipid bilayers. Figure 11. Chemical structures of POPC and ISUCA-derived lipids used in the construction of the lipid bilayers. The lipids were represented by beads, as shown in Figure 12. This bead representa- tion is typical of the MARTINI forcefield and is well documented in reference [28]. 3.1. Models The Martini forcefield was chosen to calculate bead interactions, and has been successfully applied to the study of numerous systems, including both liposomes [33] and lipid bi- layers [34]. For POPC, the headgroup consisted of two hydrophilic beads to represent the Int. J. Mol. Sci. 2023, 24, 4632 12 of 16 12 of 16 amine group and the phosphate moiety, and two intermediately hydrophilic ones for the glycerol moiety. Each of the two tails was modeled by four hydrophobic particles. We took the parameter set for POPC from ref [28]. The tails of the ISUCA-derived lipids were represented in the same way, while the headgroup consisted of three beads for the imid- azole group and two beads for glycerol (right panel in Figure 10). Because this structure was not previously parameterized in the Martini forcefield and because of the lack of ex- perimental data, bonded parameters for the headgroups of ISUCA-derived lipids were obtained from all-atoms molecular dynamics. The force-field parametrization procedure as well as the parameters obtained from the all-atoms calculations that were subsequently used in our model, are given in the Supplementary Material. The coarse-grained model used to parameterize the ISUCA headgroup and the atomistic model of the lipid bilayer are shown in Figure S1 and Figure S2, respectively. Figure S3 depicts a comparison of structural parameters obtained from both atomistic and CG molecular dynamics simula- tions. The functional forms and parameters used to describe bonded interactions of the headgroup of ISUCA-derived lipids are listed in Table S1. Some other parameters for the imidazole group were taken from reference [29]. The solvent was modeled by individual hydrophilic particles, each representing four real water molecules. A specific problem of the CG model used (and which we found in our simulations) is that the water has a freez- ing temperature that is somewhat too high, compared to real water. This phenomenon is accentuated in systems containing nucleation sites, confined geometries and periodic con- ditions, as in our models. This results in the solidification of water and leads to unrealistic results. To overcome the effects of higher freezing temperatures, we used 30% antifreeze particles in our calculations, as recommended in reference [28]. Figure 12. Structures of the molecules in the CG model. Figure 12. Structures of the molecules in the CG model. All lipid bilayers contained 116 lipids (58 in each monolayer) and 1840 water beads (including antifreeze particles). 3.2. Calculation Method All systems were simulated with the Mesocite module [52] of the Materials Studio 7.0 software [53], using periodic boundary conditions (cell parameters are shown in Table 4) in the NPT ensemble (number of particles N, pressure P and temperature T, constant) and an effective simulation time of 4 μs using a time step of 20 fs. The effective simulation time is defined as the actual simulation time multiplied by a factor of 4. This scaling factor was previously found to reproduce both lipid lateral-diffusion rates and the self-diffusion of water [54]. Monitoring the APL value indicated that the systems had reached equilib- rium after 4 μs. The temperature was controlled by a Nose thermostat [55] and kept con- stant at 310K. An Andersen barostat [56] was used to maintain pressure at 1 bar. To cal- culate Coulomb interactions between charged particles, the Ewald summation method was used and a bead-based cutoff method was applied for van der Waals interactions. The cutoff distance for both interactions was 12.5 Å. Due to the long computational times required to characterize the systems, all simulations started in the bilayer state. Before starting the CGMD simulations, the starting configurations of the lipid bilayers were en- ergy minimized to remove any possible bad contacts among the atoms. 3.1. Models The composition of each bilayer, as well as the model di- mensions used in the simulations, are shown in Table 4. Table 4. Number of beads and cell dimensions of the bilayers studied by CGMD. Table 4. Number of beads and cell dimensions of the bilayers studied by CGMD. Model No. of POPC No. of ISUCA Model Dimensions (Å3) POPC 116 ISUCA-2 Pal 0 116 63.8 × 63.9 × 90.0 ISUCA-2 Ol 0 116 65.1 × 65.1 × 87.9 ISUCA.-Pal Ol 0 116 64.3 × 64.3 × 89.5 50:50 POPC/ISUCA-2 Pal 58 58 64.3 × 63.4 × 91.9 50:50 POPC/ISUCA-2 Ol 58 58 64.3 × 63.4 × 91.9 50:50 POPC/ISUCA-Pal-Ol 58 58 64.3 × 63.4 × 91.9 Table 4. Number of beads and cell dimensions of the bilayers studied by CGMD. Model No. of POPC No. of ISUCA Model Dimensions (Å3) Int. J. Mol. Sci. 2023, 24, 4632 13 of 16 90:10 POPC/ISUCA ISUCA-Pal-Ol 104 12 64.3 × 63.5 × 92.0 90:10 POPC/ISUCA+-Pal-Ol (protonated ISUCA) 1 104 12 64.4 × 63.5 × 91.9 1 Cl− counterions were added to ensure the overall neutrality of the system under acidic conditions They were represented by a charged Qai particle. Author Contributions: Methodology, I.L.-T. and A.C.-N.; software, I.L.-T.; investigation, I.L.-T. and A.C.-N.; resources, I.L.-T. and A.C.-N.; writing—original draft preparation, I.L.-T.; writing—review 4. Conclusions Informed Consent Statement: Not applicable. Data Availability Statement: Not applicable. Acknowledgements. We would like to dedicate this work to the memory of Sebastián Cerdán Gar- cía-Esteller. It would not have been possible without his valuable help. This article is our personal tribute to him. The authors also want to thank Universidad Europea de Madrid for financial sup- port. Conflicts of Interest: The authors declare no conflicts of interest. The funders had no role in the design of the study; in the collection, analyses, or interpretation of data; in the writing of the manu- script; or in the decision to publish the results. References 1. Drummond, D.C.; Zignani, M.; Leroux, J.-C. Current status of pH-sensitive liposomes in drug delivery. Prog. Lipid Res. 2000, 39, 409–460. https://doi.org/10.1016/s0163-7827(00)00011-4. 2. Fang, Y.; Vadlamudi, M.; Huang, Y.; Guo, X. Lipid-Coated, pH-Sensitive Magnesium Phosphate Particles for Intracellular Pro- tein Delivery. Pharm. Res. 2019, 36, 81. https://doi.org/10.1007/s11095-019-2607-6. 3. Zheng, Y.; Liu, X.; Samoshina, N.M.; Samoshin, V.V.; Franz, A.H.; Guo, X. Fliposomes: Trans-2-aminocyclohexanol-based am- phiphiles as pH-sensitive conformational switches of liposome membrane—A structure-activity relationship study. Chem. Phys. Lipids 2017, 210, 129–141. https://doi.org/10.1016/j.chemphyslip.2017.10.004. 4. Bangham, A.D.; Standish, M.M.; Watkins, J.C. Diffusion of univalent ions across the lamellae of swollen phospholipids. J. Mol. Biol. 1965, 13, 238–252. https://doi.org/10.1016/s0022-2836(65)80093-6. 5. Andra, V.V.S.N.L.; Pammi, S.V.N.; Bhatraju, L.V.K.P.; Ruddaraju, L.K. A Comprehensive Review on Novel Liposomal Meth- odologies, Commercial Formulations, Clinical Trials and Patents. Bionanoscience 2022, 12, 274–291. https://doi.org/10.1007/s12668-022-00941-x. p g 6. Bulbake, U.; Doppalapudi, S.; Kommineni, N.; Khan, W. Liposomal Formulations in Clinical Use: An Updated Review. Phar- maceutics 2017, 9, 12. https://doi.org/10.3390/pharmaceutics9020012. 7. Beltrán-Gracia, E.; López-Camacho, A.; Higuera-Ciapara, I.; Velázquez-Fernández, J.B.; Vallejo-Cardona, A.A. Nanomedicine review: Clinical developments in liposomal applications. Cancer Nanotechnol. 2019, 10, 11. https://doi.org/10.1186/s12645-019- 0055-y. y 8. Needham, D.; Park, J.-Y.; Wright, A.M.; Tong, J. Materials characterization of the low temperature sensitive liposome (LTSL): Effects of the lipid composition (lysolipid and DSPE–PEG2000) on the thermal transition and release of doxorubicin. Faraday Discuss. 2013, 161, 515–534. https://doi.org/10.1039/c2fd20111a. p g 9. Clares, B.; Biedma-Ortiz, R.A.; Sáez-Fernández, E.; Prados, J.C.; Melguizo, C.; Cabeza, L.; Ortiz, R.; Arias, J.L. Nano-engineering of 5-fluorouracil-loaded magnetoliposomes for combined hyperthermia and chemotherapy against colon cancer. Eur. J. Pharm. Biopharm. 2013, 85, 329–338. https://doi.org/10.1016/j.ejpb.2013.01.028. p p g j jp 10. Zhu, L.; Torchilin, V.P. Stimulus-responsive nanopreparations for tumor targeting. Integr. Biol. 2013, 5, 96–107. https://doi.org/10.1039/c2ib20135f. 11. Chi, Y.; Yin, X.; Sun, K.; Feng, S.; Liu, J.; Chen, D.; Guo, C.; Wu, Z. Redox-sensitive and hyaluronic acid functionalized liposomes for cytoplasmic drug delivery to osteosarcoma in animal models. J. Control. Release 2017, 261, 113–125. https://doi.org/10.1016/j.jconrel.2017.06.027. p g j j 12. Li, H.; Yang, X.; Zhou, Z.; Wang, K.; Li, C.; Qiao, H.; Oupicky, D.; Sun, M. Near-infrared light-triggered drug release from a multiple lipid carrier complex using an all-in-one strategy. J. Control. Release 2017, 261, 126–137. https://doi.org/10.1016/j.jcon- rel.2017.06.029. 13. Stubbs, M.; McSheehy, P.M.; Griffiths, J.R. Causes and consequences of acidic pH in tumors: A magne Enzym. Regul. 1999, 39, 13–30. https://doi.org/10.1016/s0065-2571(98)00018-1. 14. 4. Conclusions In this work, we calculated the structural and dynamic properties of new lipid bi- layers made of POPC and/or ISUCA-derived lipids, using CGMD simulations. We think that these new chemical structures can be used as a good starting point to study and, if the results are promising, synthesize pH-sensitives liposomes made of the lipids studied in this work. The values obtained for the area per lipid, hydrophobic thickness, order pa- rameter and diffusion coefficients seem to indicate an increase in disorder of the structures when ISUCA-derived lipids form part of the bilayer. The area per lipid increases with increasing concentration of ISUCA-derived lipids and the introduction of unsaturated bonds in the hydrocarbon tails. The increase in area per lipid is observed in both pure and mixed bilayers. The same trends are observed for order parameters. They are smaller when greater amounts of unsaturated ISUCA-derived lipids are present in the structure. Hydrophobic thickness points in the same direction, although due to higher standard de- viations of the data, these results should be interpreted with caution. Diffusion coefficients are larger for ISUCA-derived lipid bilayers and a noticeable increase is seen when unsatu- rated chains are introduced into the lipid composition. Protonating the ISUCA-derived headgroup probably disrupts the bilayer, as indicated by a marked decrease in the order parameter compared to the non-protonated structure, a slight increase in the diffusion coefficient and hydrophobic thickness, and a larger APL value. y p g Although more calculations of more diverse structures, both lipid bilayers and lipo- somes, with varying concentrations of ISUCA-derived lipids and different degrees of pro- tonation are required to reach firmer conclusions, we think that these initial results are encouraging. The introduction of ISUCA disrupts the structure of the POPC bilayer, and therefore the new lipids designed in this research could be a good basis for developing new pH-sensitive liposomes. Supplementary Materials: The following supporting information can be downloaded at https://www.mdpi.com/article/10.3390/ijms24054632/s1. References [29,57–62] are cited in the Sup- plementary Materials. Author Contributions: Methodology, I.L.-T. and A.C.-N.; software, I.L.-T.; investigation, I.L.-T. and A.C.-N.; resources, I.L.-T. and A.C.-N.; writing—original draft preparation, I.L.-T.; writing—review Int. J. Mol. Sci. 2023, 24, 4632 14 of 16 14 of 16 and editing, I.L.-T. and A.C.-N. All authors have read and agreed to the published version of the manuscript. Funding: This research received no funding. Institutional Review Board Statement: Not applicable. Informed Consent Statement: Not applicable. References Skjevik, Å.A.; Madej, B.D.; Dickson, C.J.; Lin, C.; Teigen, K.; Walker, R.C.; Gould, I.R. Simulation of lipid bilayer self assembly using all-atom lipid force fields. Phys. Chem. Chem. Phys. 2016, 18, 10573–10584. https://doi.org/10.1039/c5cp07379k. j g p y atom lipid force fields. Phys. Chem. Chem. Phys. 2016, 18, 10573–10584. https://doi.org/10.1039/c5cp07379k. 24. Hakobyan, D.; Heuer, A. Comparing an All-Atom and a Coarse-Grained Description of Lipid Bilayers in Terms of Enthalpies and Entropies: From MD Simulations to 2D Lattice Models. J. Chem. Theory Comput. 2019, 15, 6393–6402. https://doi.org/10.1021/acs.jctc.9b00390. p g j 25. Hsieh, M.-K.; Yu, Y.; Klauda, J.B. All-Atom Modeling of Complex Cellular Membranes. Langmuir 2021, 38, 3–17. https://doi.org/10.1021/acs.langmuir.1c02084. p g g 26. Lee, H. Molecular Simulations of PEGylated Biomolecules, Liposomes, and Nanoparticles for Drug Delivery Applications. Phar- maceutics 2020, 12, 533. https://doi.org/10.3390/pharmaceutics12060533. p g p 27. Lemaalem, M.; Hadrioui, N.; Derouiche, A.; Ridouane, H. Structure and dynamics of liposomes designed for drug delivery: Coarse-grained molecular dynamics simulations to reveal the role of lipopolymer incorporation. RSC Adv. 2020, 10, 3745–3755. https://doi.org/10.1039/c9ra08632c. p g 28. Parchekani, J.; Allahverdi, A.; Taghdir, M.; Naderi-Manesh, H. Design and simulation of the liposomal model by using a coarse- grained molecular dynamics approach towards drug delivery goals. Sci. Rep. 2022, 12, 2371. https://doi.org/10.1038/s41598-022- 06380-8. 29. Marrink, S.J.; Risselada, H.J.; Yefimov, S.; Tieleman, D.P.; de Vries, A.H. The MARTINI force field: Coarse grained model for biomolecular simulations. J. Phys. Chem. B 2007, 111, 7812–7824. https://doi.org/10.1021/jp071097f. 30. Markvoort, A.J.; Smeijers, A.F.; Pieterse, K.; van Santen, R.A.; Hilbers, P.A.J. Lipid-Based Mechanisms for Vesicle Fission. J. Phys. Chem. B 2007, 111, 5719–5725. https://doi.org/10.1021/jp068277u. 31. Shinoda, W.; DeVane, R.; Klein, M.L. Computer simulation studies of self-assembling macromolecules. Curr. Opin. Struct. Biol. 2012, 22, 175–186. https://doi.org/10.1016/j.sbi.2012.01.011. 32. Van Hoof, B.; Markvoort, A.J.; Van Santen, R.A.; Hilbers, P.A.J. On Protein Crowding and Bilayer Bulging in Spontaneous Vesicle Formation. J. Phys. Chem. B 2012, 116, 12677–12683. https://doi.org/10.1021/jp3062306. 33. Frallicciardi, J.; Melcr, J.; Siginou, P.; Marrink, S.J.; Poolman, B. Membrane thickness, lipid phase and sterol type are determining factors in the permeability of membranes to small solutes. Nat. Commun. 2022, 13, 1605. https://doi.org/10.1038/s41467-022- 29272-x. 34. Risselada, H.J.; Marrink, S.J. Curvature effects on lipid packing and dynamics in liposomes revealed by coarse grained molec- ular dynamics simulations. Phys. Chem. Chem. Phys. 2009, 11, 2056–2067. https://doi.org/10.1039/b818782g. ewald, F.; Kroon, P.C.; Souza, P.C.T.; Marrink, S.J. Protocol for Simulations of PEGylated Proteins with M 35. References Madni, A.; Sarfraz, M.; Rehman, M.; Ahmad, M.; Akhtar, N.; Ahmad, S.; Tahir, N.; Ijaz, S.; Al-Kassas, R.; Löbenberg, R. Liposo- mal Drug Delivery: A Versatile Platform for Challenging Clinical Applications. J. Pharm. Pharm. Sci. 2014, 17, 401–426. https://doi.org/10.18433/j3cp55. p g j p 15. Zhao, Y.; Ren, W.; Zhong, T.; Zhang, S.; Huang, D.; Guo, Y.; Yao, X.; Wang, C.; Zhang, W.-Q.; Zhang, X.; et al. Tumor-specific pH-responsive peptide-modified pH-sensitive liposomes containing doxorubicin for enhancing glioma targeting and anti-tu- mor activity. J. Control. Release 2016, 222, 56–66. https://doi.org/10.1016/j.jconrel.2015.12.006. Int. J. Mol. Sci. 2023, 24, 4632 15 of 16 15 of 16 16. Yoshizaki, Y.; Yuba, E.; Sakaguchi, N.; Koiwai, K.; Harada, A.; Kono, K. Potentiation of pH-sensitive polymer-modified lipo- somes with cationic lipid inclusion as antigen delivery carriers for cancer immunotherapy. Biomaterials 2014, 35, 8186–8196. https://doi.org/10.1016/j.biomaterials.2014.05.077. p g j 17. Yoshizaki, Y.; Yuba, E.; Komatsu, T.; Udaka, K.; Harada, A.; Kono, K. Improvement of Peptide-Based Tumor Immunotherapy Using pH-Sensitive Fusogenic Polymer-Modified Liposomes. Molecules 2016, 21, 1284. https://doi.org/10.3390/mole- cules21101284. 18. Nsairat, H.; Khater, D.; Sayed, U.; Odeh, F.; Al Bawab, A.; Alshaer, W. Liposomes: Structure, composition, types, and clinical applications. Heliyon 2022, 8., e09394. https://doi.org/10.1016/j.heliyon.2022.e09394. 19. Oya, T.A.; Ishiyama, A.A.; Nishikawa, N.A. Imidazole Compound and Liposome Containing Same. European Patent EP 3170812A1, 2017. Available online: https://data.epo.org/publication-server/document?iDocId=5335445&iFormat=0 (accessed on 16th October 2022). 20. Huang, R.; Gyanani, V.; Zhao, S.; Lu, Y.; Guo, X. Imidazole-Based pH-Sensitive Convertible Liposomes for Anticancer Drug Delivery. Pharmaceuticals 2022, 15, 306. https://doi.org/10.3390/ph15030306. 21. Provent, P.; Benito, M.; Hiba, B.; Farion, R.; López-Larrubia, P.; Ballesteros, P.; Rémy, C.; Segebarth, C.; Cerdán, S.; Coles, J.A.; et al. Serial In vivo Spectroscopic Nuclear Magnetic Resonance Imaging of Lactate and Extracellular pH in Rat Gliomas Shows Redistribution of Protons Away from Sites of Glycolysis. Cancer Res. 2007, 67, 7638–7645. https://doi.org/10.1158/0008-5472.can- 06-3459. 22. Woo, S.Y.; Lee, H. All-atom simulations and free-energy calculations of coiled-coil peptides with lipid bilayers: Binding strength, structural transition, and effect on lipid dynamics. Sci. Rep. 2016, 6, 22299. https://doi.org/10.1038/srep22299. p y p p g p jevik, Å.A.; Madej, B.D.; Dickson, C.J.; Lin, C.; Teigen, K.; Walker, R.C.; Gould, I.R. Simulation of lipid bila p y p p 23. Skjevik, Å.A.; Madej, B.D.; Dickson, C.J.; Lin, C.; Teigen, K.; Walker, R.C.; Gould, I.R. Simulation of lipid bilayer self-assembly using all-atom lipid force fields. Phys. Chem. Chem. Phys. 2016, 18, 10573–10584. https://doi.org/10.1039/c5cp07379k. 23. References Grünewald, F.; Kroon, P.C.; Souza, P.C.T.; Marrink, S.J. Protocol for Simulations of PEGylated Protei tural Genomics. Methods Mol. Biol. 2021, 2199, 315–335. https://doi.org/10.1007/978-1-0716-0892-0_18. y Genomics. Methods Mol. Biol. 2021, 2199, 315–335. https://doi.org/10.1007/978-1-0716-0892-0_18. 36. López, C.A.; Rzepiela, A.J.; de Vries, A.H.; Dijkhuizen, L.; Hünenberger, P.H.; Marrink, S.J. Martini Coarse-Grained Force Field: Extension to Carbohydrates. J. Chem. Theory Comput. 2009, 5, 3195–3210. https://doi.org/10.1021/ct900313w. y p g 37. Ramadurai, S.; Holt, A.; Schäfer, L.V.; Krasnikov, V.V.; Rijkers, D.T.; Marrink, S.J.; Killian, J.A.; Poolman, B. Influence of Hydro- phobic Mismatch and Amino Acid Composition on the Lateral Diffusion of Transmembrane Peptides. Biophys. J. 2010, 99, 1447– 1454. https://doi.org/10.1016/j.bpj.2010.05.042. p g j pj 38. Nagle, J.F.; Tristram-Nagle, S. Structure of lipid bilayers. Biochim. Biophys. Acta (BBA)-Rev. Biomembr. 2000, 1469, 159–195. https://doi.org/10.1016/s0304-4157(00)00016-2. p g ( ) 39. Risselada, H.J.; Marrink, S.J. The freezing process of small lipid vesicles at molecular resolution. Soft Matter 2009, 5, 4531–4541. https://doi.org/10.1039/b913210d. p g 40. Smirnova, Y.G.; Aeffner, S.; Risselada, H.J.; Salditt, T.; Marrink, S.J.; Müller, M.; Knecht, V. Interbilayer repulsion forces between tension-free lipid bilayers from simulation. Soft Matter 2013, 9, 10705–10718. https://doi.org/10.1039/c3sm51771c. p g 40. Smirnova, Y.G.; Aeffner, S.; Risselada, H.J.; Salditt, T.; Marrink, S.J.; Müller, M.; Knecht, V. Interbilayer repulsion forces between tension-free lipid bilayers from simulation. Soft Matter 2013, 9, 10705–10718. https://doi.org/10.1039/c3sm51771c. Int. J. Mol. Sci. 2023, 24, 4632 16 of 16 16 of 16 41. Kucerka, N.; Tristram-Nagle, S.; Nagle, J. Structure of Fully Hydrated Fluid Phase Lipid Bilayers with Monounsaturated Chains. J. Membr. Biol. 2006, 208, 193–202. https://doi.org/10.1007/s00232-005-7006-8. p g 42. Risselada, H.J.; Marrink, S.J. The molecular face of lipid rafts in model membranes. Proc. Natl. Acad. Sci. USA 2008, 105, 17367– 17372. https://doi.org/10.1073/pnas.0807527105. p g p 43. Bennett, W.F.D.; MacCallum, J.L.; Hinner, M.J.; Marrink, S.J.; Tieleman, D.P. Molecular View of Cholesterol Flip-Flop and Chemical Potential in Different Membrane Environments. J. Am. Chem. Soc. 2009, 131, 12714–12720. https://doi.org/10.1021/ja903529f. 44. Karlovská, J.; Uhríková, D.; Kučerka, N.; Teixeira, J.; Devínsky, F.; Lacko, I.; Balgavý, P. Influence of N-dodecyl-N,N-dimethyl- amine N-oxide on the activity of sarcoplasmic reticulum Ca2þ-transporting ATPase reconstituted into diacylphosphatidylcho- line vesicles: Effects of bilayer physical parameters. Biophys. Chem. 2006, 119, 69–77. https://doi.org/10.1016/j.bpc.2005.09.007. y p y p p y p g j p 45. Kucerka, N.; Gallová, J.; Uhríková, D.; Balgavý, P.; Bulacu, M.; Marrink, S.; Katsaras, J. Areas of Monounsaturated Di- acylphosphatidylcholines. Biophys. J. 2009, 97, 1926–1932. https://doi.org/10.1016/j.bpj.2009.06.050. 46. Disclaimer/Publisher’s Note: The statements, opinions and data contained in all publications are solely those of the individual au- thor(s) and contributor(s) and not of MDPI and/or the editor(s). MDPI and/or the editor(s) disclaim responsibility for any injury to people or property resulting from any ideas, methods, instructions or products referred to in the content. References Arnarez, C.; Uusitalo, J.J.; Masman, M.F.; Ingólfsson, H.I.; de Jong, D.H.; Melo, M.N.; Periole, X.; de Vries, A.H.; Marrink, S.J. Dry Martini, a Coarse-Grained Force Field for Lipid Membrane Simulations with Implicit Solvent. J. Chem. Theory Comput. 2015, 11, 260–275. https://doi.org/10.1021/ct500477k. p g 47. Wang, Z.-J.; Deserno, M. Systematic implicit solvent coarse-graining of bilayer membranes: Lipid and phase transferability of the force field. New J. Phys. 2010, 12, 095004. https://doi.org/10.1088/1367-2630/12/9/095004. y p g 48. Lindblom, G.; Orädd, G. Lipid lateral diffusion and membrane heterogeneity. Biochim. Biophys. Acta 2009, 1788, 234–244. https://doi.org/10.1016/j.bbamem.2008.08.016. p g j 49. Fahey, P.F.; Koppel, D.E.; Barak, L.S.; Wolf, D.E.; Elson, E.L.; Webb, W.W. Lateral Diffusion in Planar Lipid Bilayers. Science 1977, 195, 305–306. https://doi.org/10.1126/science.831279. p g 50. Lindblom, G.; Orädd, G. NMR Studies of translational diffusion in lyotropic liquid crystals and lipid membranes. Prog. Nucl. Magn. Reson. Spectrosc. 1994, 26, 483–515. https://doi.org/10.1016/0079-6565(94)80014-6. 51. Apajalahti, T.; Niemelä, P.; Govindan, P.N.; Miettinen, M.S.; Salonen, E.; Marrink, S.-J.; Vattulainen, I. Concerted diffusion of lipids in raft-like membranes. Faraday Discuss. 2010, 144, 411–430. https://doi.org/10.1039/b901487j. y p g j https://www.3ds.com/fileadmin/PRODUCTS-SERVICES/BIOVIA/PDF/BIOVIA-Material-Studio-meso- n 22th January 2023). 52. Available online: https://www.3ds.com/fileadmin/PRODUCTS-SERVICES/BIOVIA/PDF/BIOVI cite.pdf (accessed on 22th January 2023). 53. Materials Studio Materials Modeling & Simulation Application|Dassault Systèmes BIOVIA. Available online: https://www.3ds.com/products-services/biovia/products/molecular-modeling-simulation/biovia-materials-studio/ (accessed on 22th January 2023). ) es, A.H.; Mark, A.E. Coarse Grained Model for Semiquantitative Lipid Simulations. J. Phys. Chem. B 2004, /doi.org/10.1021/jp036508g. y ) 54. Marrink, S.J.; de Vries, A.H.; Mark, A.E. Coarse Grained Model for Semiquantitative Lipid Simulatio 108, 750–760. https://doi.org/10.1021/jp036508g. 55. Nosé, S. Constant Temperature Molecular Dynamics Methods. Prog. Theor. Phys. Suppl. 1991, 103, 1–46. https://doi.org/10.1143/ptps.103.1. p g p p 56. Andersen, H.C. Molecular dynamics simulations at constant pressure and/or temperature. J. Chem. Phys. 1980, 72, 2384–2393. https://doi.org/10.1063/1.439486. p g 57. Hollingsworth, S.A.; Dror, R.O. Molecular Dynamics Simulation for All. Neuron 2018, 99, 1129–1143. https://doi.org/10.1016/j.neuron.2018.08.011. p g j 58. Scholarly Community Encyclopedia. Available online: https://encyclopedia.pub/entry/33716 (acce j munity Encyclopedia. Available online: https://encyclopedia.pub/entry/33716 (accessed on 9 February 2023) ong, G.S.; Bennett, W.F.; Arnarez, C.; Wassenaar, T.A.; Lars, V.S.; Periole, X.; Tieleman, D.P.; Marrink, S.J. 58. Scholarly Community Encyclopedia. Available online: https://encyclopedia.pub/entry/33716 (accessed on 9 February 2023). 59. Djurre, H.; de Jong, G.S.; Bennett, W.F.; Arnarez, C.; Wassenaar, T.A.; Lars, V.S.; Periole, X.; Tieleman, D.P.; Marrink, S.J. Im- proved Parameters for the Martini Coarse-Grained Protein Force Field. J. Chem. Theory Comput. 2013, 9, 687–697. https://doi.org/10.1021/ct300646g. References y y y p p y p p y y 59. Djurre, H.; de Jong, G.S.; Bennett, W.F.; Arnarez, C.; Wassenaar, T.A.; Lars, V.S.; Periole, X.; Tieleman, D.P.; Marrink, S.J. Im- proved Parameters for the Martini Coarse-Grained Protein Force Field. J. Chem. Theory Comput. 2013, 9, 687–697. https://doi.org/10.1021/ct300646g. J g ameters for the Martini Coarse-Grained Protein Force Field. J. Chem. Theory Comput. 2013, 9, 6 rg/10.1021/ct300646g. p g g 60. Sun, H.; Pengyu, R.; Fried, J.R. The COMPASS force field: Parameterization and validation for p Polym. Sci. 1998, 8, 229–246. https://doi.org/10.1016/S1089-3156(98)00042-7. gyu, R.; Fried, J.R. The COMPASS force field: Parameterization and validation for phosphazenes. Comput 998, 8, 229–246. https://doi.org/10.1016/S1089-3156(98)00042-7. y p g 61. Alessandri, R.; Uusitalo, J.J.; de Vries, A.H.; Havenith, R.W.A.; Marrink, S.J. Bulk Heterojunction Morphologies with Atomistic Resolution from Coarse-Grain Solvent Evaporation Simulations. J. Am. Chem. Soc. 2017, 139, 3697–3705. https://doi.org/10.1021/jacs.6b11717. p g j 62. Qiu, L.; Liu, J.; Alessandri, R.; Qiu, X.; Koopmans, M.; Havenith, R.W.A.; Marrink, S.J.; Chiechi, R.C.; Koster, L.J.A.; Hummelen, J.C. Enhancing doping efficiency by improving host-dopant miscibility for fullerene-based n-type thermoelectrics. J. Mater. Chem. A 2017, 5, 21234–21241. https://doi.org/10.1039/C7TA06609K. Disclaimer/Publisher’s Note: The statements, opinions and data contained in all publications are solely those of the individual au- thor(s) and contributor(s) and not of MDPI and/or the editor(s). MDPI and/or the editor(s) disclaim responsibility for any injury to people or property resulting from any ideas, methods, instructions or products referred to in the content. Disclaimer/Publisher’s Note: The statements, opinions and data contained in all publications are solely those of the individual au- thor(s) and contributor(s) and not of MDPI and/or the editor(s). MDPI and/or the editor(s) disclaim responsibility for any injury to people or property resulting from any ideas, methods, instructions or products referred to in the content.
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A peptide from the staphylococcal protein Efb binds P‐selectin and inhibits the interaction of platelets with leukocytes
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Citation for published version: Wallis, S, Wolska, N, Englert, H, Posner, M, Upadhyay, A, Renne, T, Eggleston, I, Bagby, S & Pula, G 2022, 'A peptide from the staphylococcal protein Efb binds P-selectin and inhibits the interaction of platelets with leukocytes', Journal of Thrombosis and Haemostasis, vol. 20, no. 3, pp. 729-741. https://doi.org/10.1111/jth.15613 DOI: 10.1111/jth.15613 DOI: 10.1111/jth.15613 Publication date: 2022 Document Version Publisher's PDF, also known as Version of record Publisher Rights CC BY University of Bath General rights General rights Copyright and moral rights for the publications made accessible in the public portal are retained by the authors and/or other copyright owners and it is a condition of accessing publications that users recognise and abide by the legal requirements associated with these rights. Take down policy If you believe that this document breaches copyright please contact us providing details, and we will remove access to the work immediately and investigate your claim. Citation for published version: Wallis, S, Wolska, N, Englert, H, Posner, M, Upadhyay, A, Renne, T, Eggleston, I, Bagby, S & Pula, G 2022, 'A peptide from the staphylococcal protein Efb binds P-selectin and inhibits the interaction of platelets with leukocytes', Journal of Thrombosis and Haemostasis, vol. 20, no. 3, pp. 729-741. https://doi.org/10.1111/jth.15613 Alternative formats If you require this document in an alternative format, please contact: openaccess@bath.ac.uk General rights Copyright and moral rights for the publications made accessible in the public portal are retained by the authors and/or other copyright owners and it is a condition of accessing publications that users recognise and abide by the legal requirements associated with these rights. SHORT TITLE: A novel peptide antagonist of P-selectin d Stuart Wallis 1,2, Nina Wolska 2, Hanna Englert2, Mareike Posner1,3, Abhishek Upadhyay1, Thomas Renné2,4, Ian Eggleston5, Stefan Bagby1 and Giordano Pula2§. ed Stuart Wallis 1,2, Nina Wolska 2, Hanna Englert2, Mareike Posner1,3, Abhishek Upadhyay1, Thomas Renné2,4, Ian Eggleston5, Stefan Bagby1 and Giordano Pula2§. 1Departments of Biology and Biochemistry, University of Bath, United Kingdom; 2Institute of Clinical Chemistry and Laboratory Medicine, University Medical Center Eppendorf - Hamburg, Hamburg, Germany; 3Department of Life Sciences, Manchester Metropolitan University, Manchester, United Kingdom; 4Center for Thrombosis and Hemostasis (CTH), Johannes Gutenberg University Medical Center, Mainz, Germany, 5Department of Pharmacy and Pharmacology, University of Bath, United Kingdom. §Corresponding author: University Medical Center Eppendorf Hamburg (UKE), Institute for Clinical Chemistry and Laboratory Medicine, Martinistrasse 52, 20246 Hamburg, Germany Email: g pula@uke de Phone: +49 (0) 40 7410 54552 cepted 1Departments of Biology and Biochemistry, University of Bath, United Kingdom; 2Institute of Clinical Chemistry and Laboratory Medicine, University Medical Center Eppendorf - Hamburg, Hamburg, Germany; 3Department of Life Sciences, Manchester Metropolitan University, Manchester, United Kingdom; 4Center for Thrombosis and Hemostasis (CTH), Johannes Gutenberg University Medical Center, Mainz, Germany, 5Department of Pharmacy and Pharmacology, University of Bath, United Kingdom. epte §Corresponding author: University Medical Center Eppendorf Hamburg (UKE), Institute for Clinical Chemistry and Laboratory Medicine, Martinistrasse 52, 20246 Hamburg, Germany. Email: g.pula@uke.de, Phone: +49 (0) 40 7410 54552. cce MR STUART WALLIS (Orcid ID : 0000-0002-6908-9168) DR NINA MALGORZATA WOLSKA (Orcid ID : 0000-0002-8982-9741) DR GIORDANO PULA (Orcid ID : 0000-0002-7769-1140) cle Article type : Original Article rt TITLE: A peptide from the staphylococcal protein Efb binds P-selectin and inhibits the interaction of platelets with leukocytes A SHORT TITLE: A novel peptide antagonist of P-selectin d ESSENTIALS Ac  Efb, an S. aureus protein, binds P-selectin and inhibits the platelet/leukocyte interaction. A  Efb, an S. aureus protein, binds P-selectin and inhibits the platelet/leukocyte interaction. A This article has been accepted for publication and undergone full peer review but has not been through the copyediting, typesetting, pagination and proofreading process, which may lead to differences between this version and the Version of Record. Please cite this article as doi: 10.1111/JTH.15613 A This article has been accepted for publication and undergone full peer review but has not been through the copyediting, typesetting, pagination and proofreading process, which may lead to differences between this version and the Version of Record. Please cite this article as doi: 10.1111/JTH.15613 A 10.1111/JTH.15613 This article is protected by copyright. All rights reserved  Here, we aimed to identity and characterise the Efb motif responsible for P- selectin binding. e  Efb68-87 binds platelets in a P-selectin-dependent manner without affecting their activation. le  Efb68-87 binds platelets in a P-selectin-dependent manner without affecting their activation. le  Efb68-87 inhibits the formation of PLAs and the platelet-dependent stimulation of NETs in vitro. c ABSTRACT ti Aims: P-selectin is a key surface adhesion molecule for the interaction of platelets with leukocytes. We have shown previously that the N-terminal domain of S. aureus extracellular fibrinogen-binding protein (Efb) binds to P-selectin and interferes with platelet-leukocyte aggregate formation. Here, we aimed to identify the minimal Efb motif required for binding platelets and to characterise its ability to interfering with the formation of platelet-leukocyte aggregates. Art Methods and Results: Using a library of synthetic peptides, we mapped the platelet- binding site to a continuous 20 amino acid stretch. The peptide Efb68-87 was able to bind to resting and, to a greater extent, thrombin-stimulated platelets in the absence of fibrinogen. Dot blots, pull-down assays and P-selectin glycoprotein ligand-1 (PSGL-1) competitive binding experiments identified P-selectin as the cellular docking site mediating Efb68-87 platelet binding. Accordingly, Efb68-87 did not bind to other blood cells and captured platelets from human whole blood under low shear stress conditions. Efb68- 87 did not affect platelet activation as tested by aggregometry, flow cytometry and immunoblotting, but inhibited the formation of platelet-leukocyte aggregates (PLAs). Efb68-87 also interfered with the platelet-dependent stimulation of neutrophil extracellular traps (NETs) formation in vitro. epted A Conclusions: We have identified Efb68-87 as a novel selective platelet-binding peptide. Efb68-87 binds directly to P-selectin and inhibits interactions of platelets with leukocytes that lead to PLA and NET formation. As PLAs and NETs play a key role in thromboinflammation, Efb68-87 is an exciting candidate for the development of novel selective inhibitors of the proinflammatory activity of platelets. Acce Word count (abstract): 246 A Word count (abstract): 246 A Word count (abstract): 246 A This article is protected by copyright. All rights reserved This article is protected by copyright. All rights reserved Word count (main text)): 4,113 Number of References: 50 Keywords: thromboinflammation, P-selectin, platelet, leukocyte, platelet-leukocyte aggregate, neutrophil extracellular trap. le This article is protected by copyright. All rights reserved INTRODUCTION c Our understanding of the role of platelets in vascular health has significantly progressed in recent years. In addition to platelets’ established role in haemostasis and thrombosis, their participation in inflammatory responses has become evident (1). The role of platelet pro-inflammatory activity for progression of cardiovascular disease has attracted considerable attention (2). In addition to their ability to release pro-inflammatory cytokines (3) and modulate the release of cytokines by leukocytes (4), platelets directly interact with leukocytes to form platelet-leukocyte aggregates (PLAs) (5). PLA formation has been shown to facilitate leukocyte homing and extravasation at the site of vascular injury, thus promoting inflammation (6). Inflammation is a key factor in vascular complications and cardiovascular diseases (7). PLAs are in fact increased in coronary syndromes, in the form of platelet-monocyte (8-12) and platelet-neutrophil complexes (13). PLA formation also increases as a consequence of coronary surgical intervention (14). Although CD40- CD40L interactions (15) and the binding of the leukocyte receptor CD11b/CD18 (Mac-1) with either platelet glycoprotein receptor GPIBα (16) or platelet integrin αIIbβ3 (17) participate in the formation of PLAs, the interaction of platelet P-selectin and its physiological ligand P-selectin glycoprotein ligand-1 (PSGL-1) on leukocytes is critical for the heterotypic aggregation of these cell types (18). The interaction of platelets with neutrophils has particularly important pathophysiological consequences. Platelets can induce the formation of neutrophil extracellular traps (NETs) (19). While NETs have originally been described in host-defence processes (20), their role in the onset and progression of venous and arterial thrombosis has been shown in animal models and clinical studies (21-23). As for PLAs, the binding of P-selectin on platelets with PSGL-1 on leukocytes is a critical step in NET formation (24). ccepted Artic Because of its role in the interaction of platelets with leukocytes, P-selectin has attracted increasing interest as a drug discovery target to develop pharmacobiological agents able to control inflammation and vascular degeneration via disruption or reduced formation of Ac This article is protected by copyright. All rights reserved PLAs and NETs. The clinical potential of P-selectin inhibitors requires further investigation. We have shown previously that extracellular fibrinogen binding protein (Efb), a protein secreted by Staphylococcus aureus (S. aureus), directly binds P-selectin and inhibits its interaction with PSGL-1 (25). INTRODUCTION c Efb comprises an N-terminal secretion signal, a N-terminal domain lacking structural organisation (Efb-N, residues Ser30-Thr104), and a tri-helical bundle C-terminal domain (Efb-C, residues Ile105-Lys165) (29) (Figure 1A). Efb-N includes two repeated motifs (residues Asn46-Pro67 and Asn77-Ala98) that are homologous to S. aureus coagulase repeats and that are part of fibrinogen binding sites comprising residues Ser30-Pro67 and Lys68-Ala98 (30). Efb-C plays an immunosuppressive role by interfering with the complement system (29, 31). In combination, Efb-N and Efb-C facilitate S. aureus escape from phagocytosis and increase S. aureus pathogenicity (32). In fact, S. aureus infections are significantly exacerbated in vivo in the presence of Efb (33). d Article In this study, we mapped the P-selectin-binding site in Efb-N using a peptide scanning approach. A 20 aa-peptide located within Efb-N between Lys68 and Glu87 bound P- selectin. We show here that this peptide selectively binds platelets, without affecting their haemostatic function, and inhibits platelets’ ability both to complex with leukocytes to form PLAs and to induce NET formation. The therapeutic potential of this Efb-derived peptide to control thromboinflammation in cardiovascular patients will require further investigation. pted INTRODUCTION c In contrast to numerous bacterial proteins that have been reported to positively modulate platelet function, Efb inhibits platelet activation and thrombus formation (26, 27), facilitating bacterial survival in the blood and aggravating infection (28). Efb comprises an N-terminal secretion signal, a N-terminal domain lacking structural organisation (Efb-N, residues Ser30-Thr104), and a tri-helical bundle C-terminal domain (Efb-C, residues Ile105-Lys165) (29) (Figure 1A). Efb-N includes two repeated motifs (residues Asn46-Pro67 and Asn77-Ala98) that are homologous to S. aureus coagulase repeats and that are part of fibrinogen binding sites comprising residues Ser30-Pro67 and Lys68-Ala98 (30). Efb-C plays an immunosuppressive role by interfering with the complement system (29, 31). In combination, Efb-N and Efb-C facilitate S. aureus escape from phagocytosis and increase S. aureus pathogenicity (32). In fact, S. aureus infections are significantly exacerbated in vivo in the presence of Efb (33). d Article PLAs and NETs. The clinical potential of P-selectin inhibitors requires further investigation. We have shown previously that extracellular fibrinogen binding protein (Efb), a protein secreted by Staphylococcus aureus (S. aureus), directly binds P-selectin and inhibits its interaction with PSGL-1 (25). In contrast to numerous bacterial proteins that have been reported to positively modulate platelet function, Efb inhibits platelet activation and thrombus formation (26, 27), facilitating bacterial survival in the blood and aggravating infection (28). Efb comprises an N-terminal secretion signal, a N-terminal domain lacking structural organisation (Efb-N, residues Ser30-Thr104), and a tri-helical bundle C-terminal domain (Efb-C, residues Ile105-Lys165) (29) (Figure 1A). Efb-N includes two repeated motifs (residues Asn46-Pro67 and Asn77-Ala98) that are homologous to S. aureus coagulase repeats and that are part of fibrinogen binding sites comprising residues Ser30-Pro67 and Lys68-Ala98 (30). Efb-C plays an immunosuppressive role by interfering with the complement system (29, 31). In combination, Efb-N and Efb-C facilitate S. aureus escape from phagocytosis and increase S. aureus pathogenicity (32). In fact, S. aureus infections are significantly exacerbated in vivo in the presence of Efb (33). d Article PLAs and NETs. The clinical potential of P-selectin inhibitors requires further investigation. We have shown previously that extracellular fibrinogen binding protein (Efb), a protein secreted by Staphylococcus aureus (S. aureus), directly binds P-selectin and inhibits its interaction with PSGL-1 (25). In contrast to numerous bacterial proteins that have been reported to positively modulate platelet function, Efb inhibits platelet activation and thrombus formation (26, 27), facilitating bacterial survival in the blood and aggravating infection (28). Blood collection and platelet isolation d Procedures utilising human blood conformed to the principles outlined in the Declaration of Helsinki. Human blood was collected at the Institute of Clinical Chemistry and Laboratory Medicine (University Medical Center Eppendorf - Hamburg) after informed volunteers’ consent was given in written form. Sodium citrate (0.5% w/v) was used as an anticoagulant. Platelet-rich plasma (PRP) was separated from whole blood by centrifugation (250g, 17 minutes) and platelets were separated from PRP by a second centrifugation step (500g, 10 minutes) in the presence of prostaglandin E1 (PGE1, 40 ng/mL) and indomethacin (10 μM). All centrifugations were performed with soft deceleration settings. Platelets were resuspended in modified Tyrode’s buffer at a density of 2×108 platelets/ml throughout the study. cepted Efb46-67 NIVEYNDGTFKYQSRPKFNSTP Efb46-67 (ctrl) RKVTPSFYQFNITDKNPGESNY Efb68-76 KYIKFKHDY Efb68-76 (ctrl) KIDKYYHKF Efb68-87 KYIKFKHDYNILEFNDGTFE Efb68-87 (ctrl) YKFEENLFGTNDKDFKIYHI Efb68-99 KYIKFKHDYNILEFNDGTFEYGARPQFNKPAA Efb68-99 (ctrl) KNFELAKAGYPQIAHKTNKPGFRFYDDNFIEY Efb77-99 NILEFNDGTFEYGARPQFNKPAA Efb77-99 (ctrl) PFYIAPLARAGTNDNEGFFQENK In order to fluorescently label lysine residues, synthetic peptides (or recombinant Efb-N30- 105) were coupled by direct reaction in 0.1 M sodium carbonate buffer with fluorescein isothiocyanate (FITC). The reaction mixture was incubated, with gentle agitation, at 4°C for 15 hours. Free FITC was eliminated by dialysis in PBS using a 500 Da MWCO cut-off membrane. Article Efb46-67 NIVEYNDGTFKYQSRPKFNSTP Efb46-67 (ctrl) RKVTPSFYQFNITDKNPGESNY Efb68-76 KYIKFKHDY Efb68-76 (ctrl) KIDKYYHKF Efb68-87 KYIKFKHDYNILEFNDGTFE Efb68-87 (ctrl) YKFEENLFGTNDKDFKIYHI Efb68-99 KYIKFKHDYNILEFNDGTFEYGARPQFNKPAA Efb68-99 (ctrl) KNFELAKAGYPQIAHKTNKPGFRFYDDNFIEY Efb77-99 NILEFNDGTFEYGARPQFNKPAA Efb77-99 (ctrl) PFYIAPLARAGTNDNEGFFQENK In order to fluorescently label lysine residues, synthetic peptides (or recombinant Efb-N30- 105) were coupled by direct reaction in 0.1 M sodium carbonate buffer with fluorescein isothiocyanate (FITC). The reaction mixture was incubated, with gentle agitation, at 4°C for 15 hours. Free FITC was eliminated by dialysis in PBS using a 500 Da MWCO cut-off membrane. Article Peptide synthesis and labelling e All peptides were synthesised by KareBay Bio with the following sequences (purity >98%, Supplementary Figure 1), where (ctrl) designates the scrambled control version: Efb30-45 SEGYGPREKKPVSINH Efb30-45 (ctrl) SPGGKHPVNYKSERIE Efb30-67 SEGYGPREKKPVSINHNIVEYNDGTFKYQSRPKFNSTP Efb30-67 (ctrl) DTYKINSEYPPVRSPNPGGKQYKFSTINGKHESFRVEN Acc This article is protected by copyright. All rights reserved Flow cytometry (Efb binding) c For isolated platelet binding, 107 platelets/ml were incubated in the presence or absence of 3 mg/ml fibrinogen and 0.2 U/ml thrombin for 10 minutes at room temperature. 1 µM FITC-Efb peptide, FITC-scrambled Efb peptide or FITC-BSA was then added to the Ac This article is protected by copyright. All rights reserved platelets followed by another 10 minute incubation. Platelet binding was assessed by flow cytometry using a FACSAria III (BD Biosciences). e Alternatively, 10 µM FITC-conjugated Efb peptide was incubated for 30 minutes at room temperature in heparin-anticoagulated (5 U/ml) human blood with CD42b/PE (#561854, BD Biosciences) and CD45/APC (#555745, BD Biosciences) antibodies. Cells were then fixed with 1% paraformaldehyde (PFA) for 15 minutes and binding was assessed by flow cytometry using a FACSCanto II (BD Biosciences). icle Flow cytometry (activation/degranulation markers) t Heparin-anticoagulated (5 U/ml) human blood was preincubated with the relevant peptide for 15 minutes at 37°C. Platelets were activated with 1 U/ml thrombin for 15 minutes at 37°C. Samples were then labelled with anti-CD42b/APC (#551061, BD Biosciences), anti-CD62P/PE (#550561, BD Biosciences), and PAC-1/FITC (#340507, BD Biosciences) antibodies for 15 minutes at room temperature. Samples were then fixed with 4% PFA for 15 minutes at RT. Directly before measurement, the samples were diluted 1:1 with PBS and the fluorescence labelling was measured in 10,000 CD42b/APC-positive events, using a FACSCanto II flow cytometer (BD Biosciences). The mean fluorescence intensity (MFI) of CD42b/APC-positive events in the PE and FITC spectrum bands was analysed. ed Ar Isolated platelet fluorescence imaging e Coverslips were coated with 0.01% w/v poly-L-lysine and blocked with 0.1% w/v solution of BSA in PBS. Isolated platelets (resting, or activated in suspension with 10 µM TRAP6 peptide for 5 minutes at 37°C) were dispensed onto the prepared coverslips at 0.5 x 107 platelets/ml density and incubated for 1h at RT. Platelets were then fixed for 15 minutes in 4% PFA and stained with 2 μM solution of FITC-labelled peptide (Efb68-87 or Efb68-87 (ctrl)) and, subsequently, with 1 U/ml phalloidin-rhodamine in PBS-Tween20 0.1% v/v. The coverslips were mounted onto the glass slides with Fluoromount mounting medium. Imaging was performed with a Leica TCS SP5 confocal microscope. cept Immunoblotting A Platelet suspensions prepared as described above were stimulated in the presence of 1 mM EGTA and lysed by adding lysis buffer (12.5 mM Tris, pH 8.3, 97 mM glycine, 2% sodium dodecyl sulphate (SDS), 0.5% dithiothreitol (DTT), 10% glycerol, and 0.01% bromophenol blue). Platelet proteins were separated by SDS-polyacrylamide gel electrophoresis (SDS-PAGE), transferred to polyvinylidene difluoride (PVDF) membrane, and analysed by immunoblotting for P-selectin (Abcam, #ab182135), thrombospondin 1 (Thermo Fisher Scientific, #MA5-13398), multimerin 1 (Santa Cruz Biotechnologies, #sc- 104427), actin (Merck Millipore #A5441), protein kinase C (PKC) phospho-substrates (#2261, Cell Signaling Technology) and phospho-Src (R&D Systems, # AF2685). Densitometry was performed using ImageJ 1.47v (Wayne Rasband, National Institute of Health, US) and presented as intensity ratio over actin staining (i.e. loading control). epted A He e Pull-down experiments c Efb68-87 or Efb68-87 (ctrl) was immobilised on CarboxyLink™ Coupling Resin (Thermo Fisher Scientific), according to the manufacturer’s instructions. Peptide-conjugated resin was incubated with platelet lysates prepared by sonication from isolated platelet solution. After binding overnight at 4°C, the peptide complexed to platelet proteins was eluted from the resin according to the manufacturer’s instructions. Eluates were subsequently utilised for immunoblotting. Arti Dot blots c 2 µg of Efb peptide (Karebay Bio, USA) was dotted onto nitrocellulose membrane and dried. The membrane was then blocked with 5% w/v BSA in TBS-T for 30 minutes before A This article is protected by copyright. All rights reserved This article is protected by copyright. All rights reserved being incubated in 0.1 ug/ml Fc-P-selectin (R&D Systems, # 137-PS-050) for 45 minutes. Subsequently, anti-P-selectin (Abcam, #ab182135) and IRDye® 800CW Donkey anti- Rabbit IgG (Licor, #926-32213) antibodies were used for staining the membrane. Imaging was performed with a Licor Odyssey CLx scanner. le PLA quantification r Heparin-anticoagulated (5 U/ml) human blood was treated with red blood cells (RBC) lysis solution (Miltenyi Biotec, Germany) and treated with Efb68-87 or Efb68-87 (ctrl) and collagen-related peptide (CRP) (1 µg/ml), TRAP6 (5 µM) and/or LPS from Staphylococcus aureus (1 µg/ml) to stimulate platelet-leukocyte aggregation. Anti- CD42b/PE (#561854, BD Biosciences) and anti-CD45/APC (#555745, BD Biosciences) antibodies were used to stain platelets and leukocytes, respectively. Following fixation in 1% w/v PFA, all samples were analysed using a FACSCanto II flow cytometer (BD Biosciences). PLAs were quantified as events positively stained for both markers (see Figure 5A) and their density was expressed as number of double-positive events over 10,000 events. ted Ar Platelet aggregation c Platelets resuspended in modified Tyrode’s buffer at a density of 2×108 platelets/ml were stimulated using a Chrono-Log 490 4+4 aggregometer. Aggregation was induced with 0.1 U/ml human thrombin or 3 µg/ml Horm collagen. Absorbance was measured for 10 minutes and expressed as % change of absorbance. Acc This article is protected by copyright. All rights reserved Platelet adhesion/thrombus formation under flow V ( e Vena8-Fluoro+ flow chambers were coated with 0.1mg/ml collagen or Efb68-87 or Efb68-87 (ctrl). Blood was taken in 0.25% w/v citrate and 25 µM D-Phenylalanyl-Prolyl-Arginyl Chloromethyl Ketone (PPACK) and labelled with 1 μM 3,3'-dihexyloxacarbocyanine iodide (DiOC6) for 10 minutes at 37°C. As indicated in the text, the flow was set to 1000 sec-1 (40 µl/minute) or 200 sec-1 (8 µl/minute). Quantification of platelet adhesion after 5 minutes of flow was obtained by LED fluorescence microscopy (EVOS Fl) and image analysis using ImageJ 1.47v (Wayne Rasband, National Institute of Health, USA). ticle This article is protected by copyright. All rights reserved NET visualisation and quantification pt Neutrophils were isolated from human peripheral blood as previously described (34). 5 x 104 neutrophils per well were seeded in 96-well plates and incubated at 37°C for 1 hour to allow cell adhesion. Platelet suspensions (1 x 107 platelets/ml) were incubated for 15 minutes with 5μM Efb68-87 or Efb68-87 (ctrl) before incubation with TRAP6 (5 µM) for 15 minutes to obtain platelet stimulation. Platelet suspensions were then added to the neutrophil monolayers (1 x 106 platelets/well) and incubated for 16 hours to induce NET formation. 0.1 µM phorbol-12-myristate-13-acetate (PMA) was added to positive control wells. Following fixation with 2% w/v PFA and staining with 1 µM Sytox Green (Life Technologies), NETs were visualised via fluorescence microscopy (Nikon ECLIPSE Accep This article is protected by copyright. All rights reserved This article is protected by copyright. All rights reserved Ts2R with Nikon DS-Fi3 camera) and quantified using a microplate reader (Tecan Spark 10M) using 485 nmexc / 535 nmem. e Statistical analysis l Data normality and homoscedasticity were tested with Shapiro-Wilk and Bartlett’s tests, respectively. For dual comparisons (i.e. WT vs 3KO) of normal/homoscedastic data, statistical analysis was performed by unpaired Student’s t-tests. Dual comparisons (i.e. WT vs 3KO) of non-normal/non-homoscedastic data were analysed by non-parametric Mann-Whitney test. One-way ANOVA with Bonferroni post-test was used for multiple comparison tests after testing that data are normal and homoscedastic. The software package GraphPad Prism Version 8.1.0 for Windows 64 bit was used for all statistical analyses. For the KD estimate, we utilised a sigmoidal regression model for one-site saturation binding within GraphPad Prism. Throughout the study, the results were expressed as the mean ± standard error (SEM). Differences were considered significant at P value < 0.05 (*), 0.01 (**) or 0.001 (***). Artic This article is protected by copyright. All rights reserved Efb68-87 selectively binds platelets and captures them from blood under flow d Efb68-87 selectively binds platelets and captures them from blood under flow Amongst blood cells, P-selectin is selectively expressed in platelets. Therefore, we assessed whether Efb68-87 selectively binds platelets or might interact with other blood cells. Antibodies for platelet-specific (CD42b) and leukocyte-specific (CD45) markers were utilised in flow cytometry to identify platelets and leukocytes (white blood cells (WBCs) and red blood cells (RBCs)) (Figure 3A). FITC-Efb68-87 exclusively bound to platelets, while binding of WBCs and RBCs was negligible. We then used an adhesion assay under physiological flow to probe the stability of Efb68-87 binding to platelets, assessing whether Efb68-87 can be used to capture platelets from whole blood. Platelets bound to surfaces coated with Efb68-87 at venous (200 sec-1) (Figure 3B), but not arterial shear stress (1,000 sec-1) (Supplementary Figure 2). Interestingly, platelet adhesion and thrombus formation on fibrous collagen were not affected by Efb68-87 (Figure 3C), suggesting that Efb68-87 does not interfere with platelet function. ccepted Efb68-87 binds to platelets via P-selectin d residues 42-771) and human IgG1 residues 100-330, was immobilised on nitrocellulose membrane and treated with the library of FITC-labelled Efb peptides. As detected by fluorescence imaging of the membrane, Efb68-87, Efb68-99 and Efb-N (i.e. Efb30-105), bound to immobilised P-selectin. All other Efb- and scrambled control-peptides did not exhibit any binding activity to P-selectin. In addition, when immobilised on agarose beads, Efb68-87 pulled down P-selectin from platelet lysates, whereas it did not show any binding of thrombospondin-1 or multimerin-1, which were previously identified and confirmed as Efb-interacting proteins (25) (Figure 2D). The role of P-selectin in the binding of Efb68-87 was confirmed by competitive binding experiments using a recombinant chimeric construct of the physiological P-selectin ligand P-selectin glycoprotein ligand- (PSGL-1) (Figure 2E). In these experiments, the binding of FITC- Efb68-87 was competitively inhibited by Fc-PSGL-1 (R&D Systems, # 3345-PS-050), confirming that P-selectin is the binding site for Efb68-87 on platelets. Article Efb68-87 binds to platelets via P-selectin d Binding experiments identified Efb68-87 (Figure 1A) as the minimal Efb sequence required to interact with platelets in the absence of fibrinogen (Figure 1B). Platelet stimulation with thrombin increased platelet-binding of Efb68-87 (Figure 1C). Efb68-99, a longer peptide including the newly-identified P-selectin-binding motif, displayed the ability to bind platelet upon platelet stimulation but not in unstimulated platelets. The addition of 3 mg/ml fibrinogen (i.e. physiological plasma concentration) stimulated binding of both Efb68-87 and Efb30-67 (Figure 1D), although it did not increase the level of Efb68-87 binding over the value for unstimulated platelets. Fluorescence microscopy (Figure 2A) and flow cytometry (Figure 2B) confirmed binding of FITC-Efb68-87 to unstimulated and stimulated platelets (TRAP6 and thrombin, respectively). The flow cytometry experiments showed that although the overall amount of bound Efb68-87 peptide is notably higher after platelet stimulation with thrombin (Figure 2B), the concentration-binding curve indicates a similar KD for the binding of Efb68-87 to resting and thrombin-stimulated platelets (5.7 μM and 3.4 μM, respectively). The binding site for Efb68-87 on platelets was investigated by dot blot Accepte This article is protected by copyright. All rights reserved (Figure 2C). Fc-P-selectin, a chimeric construct that allows effective suspension of P- selectin in aqueous solution, comprising the extracellular domain of human P-selectin (i.e. residues 42-771) and human IgG1 residues 100-330, was immobilised on nitrocellulose membrane and treated with the library of FITC-labelled Efb peptides. As detected by fluorescence imaging of the membrane, Efb68-87, Efb68-99 and Efb-N (i.e. Efb30-105), bound to immobilised P-selectin. All other Efb- and scrambled control-peptides did not exhibit any binding activity to P-selectin. In addition, when immobilised on agarose beads, Efb68-87 pulled down P-selectin from platelet lysates, whereas it did not show any binding of thrombospondin-1 or multimerin-1, which were previously identified and confirmed as Efb-interacting proteins (25) (Figure 2D). The role of P-selectin in the binding of Efb68-87 was confirmed by competitive binding experiments using a recombinant chimeric construct of the physiological P-selectin ligand P-selectin glycoprotein ligand- (PSGL-1) (Figure 2E). In these experiments, the binding of FITC- Efb68-87 was competitively inhibited by Fc-PSGL-1 (R&D Systems, # 3345-PS-050), confirming that P-selectin is the binding site for Efb68-87 on platelets. Article (Figure 2C). Fc-P-selectin, a chimeric construct that allows effective suspension of P- selectin in aqueous solution, comprising the extracellular domain of human P-selectin (i.e. Efb68-87 does not interfere with platelet activation and haemostatic function Ac Collectively, these results confirm that Efb68-87 binding does not interfere with platelet function. d Article a p le Efb68-87 does not interfere with platelet activation and haemostatic function Ac This article is protected by copyright. All rights reserved This article is protected by copyright. All rights reserved This article is protected by copyright. All rights reserved We investigated functional implications of Efb68-87 for platelet function. Platelet aggregation in response to the agonists collagen and thrombin was not affected by platelet pre-treatment with Efb68-87 compared to Efb68-87 (ctrl) (Figure 4A). The aggregation in response to secondary agonists ADP and U46619 (a stable analogue of thromboxane A2) was also unaffected by Efb68-87 (Supplementary Figure 3). In addition, platelet activation and degranulation were tested by flow cytometry. Data showed that the presence of Efb68-87 did not significantly change integrin αIIbβ3 activation (PAC1 antibody) or platelet degranulation (P-selectin externalisation) compared to Efb68-87 (ctrl) (Figure 4B). Finally, potential effect of Efb68-87 incubation on intracellular platelets signalling was tested by immunoblotting (Figure 4C). Basal (resting platelets) and activated (thrombin- stimulated platelets) levels of PKC activity and Src kinase activation in the presence of Efb68-87 and Efb68-87 (ctrl) were assessed using an anti-phospho PKC substrate antibody (detecting various proteins phosphorylated by classical platelet PKC isoforms α and β) and anti-phospho Src antibody (detecting Src in its active/phosphorylated form). Treatment with Efb68-87 did not affect activity of these two major platelet signalling pathways. Collectively, these results confirm that Efb68-87 binding does not interfere with platelet function. d Article We investigated functional implications of Efb68-87 for platelet function. Platelet aggregation in response to the agonists collagen and thrombin was not affected by platelet pre-treatment with Efb68-87 compared to Efb68-87 (ctrl) (Figure 4A). The aggregation in response to secondary agonists ADP and U46619 (a stable analogue of thromboxane A2) was also unaffected by Efb68-87 (Supplementary Figure 3). In addition, platelet activation and degranulation were tested by flow cytometry. Data showed that the presence of Efb68-87 did not significantly change integrin αIIbβ3 activation (PAC1 antibody) or platelet degranulation (P-selectin externalisation) compared to Efb68-87 (ctrl) (Figure 4B). Finally, potential effect of Efb68-87 incubation on intracellular platelets signalling was tested by immunoblotting (Figure 4C). Basal (resting platelets) and activated (thrombin- stimulated platelets) levels of PKC activity and Src kinase activation in the presence of Efb68-87 and Efb68-87 (ctrl) were assessed using an anti-phospho PKC substrate antibody (detecting various proteins phosphorylated by classical platelet PKC isoforms α and β) and anti-phospho Src antibody (detecting Src in its active/phosphorylated form). Treatment with Efb68-87 did not affect activity of these two major platelet signalling pathways. This article is protected by copyright. All rights reserved Efb68-87 inhibits formation of platelet-leukocyte aggregates and reduces formation of neutrophil extracellular traps e The formation of heterotypic cellular complexes between platelets and leukocytes (i.e. platelet-leukocyte aggregates or PLAs) is an important driver of thromboinflammation. Since PLA formation depends on binding of platelet P-selectin to leukocyte PSGL-1, we tested whether Efb68-87 can block the formation of PLAs in human whole blood. PLAs were detected by flow cytometry as an event highly stained by both anti-CD42b and anti- CD45 antibodies (Figure 5A). PLA levels were significantly increased by stimulation of whole blood with the GPVI receptor agonist CRP, but not the PAR1 agonist TRAP6 or the Toll-like receptor (TLR) agonist LPS used separately (Supplementary Figure 4). The study of Efb68-87‘s effect on PLA formation was performed with combined stimulation by CRP, TRAP6 and LPS. Substantial inhibition of PLA formation was observed at 1 μM or higher concentrations of Efb68-87 (Figure 5B). Since NET formation is another process dependent on P-selectin binding to PSGL-1 (24), we next investigated whether Efb68-87 Accept This article is protected by copyright. All rights reserved interferes with the stimulation of NET formation by platelets. Neutrophils isolated from human peripheral blood were allowed to adhere and were then treated with platelets. Resting platelets were compared to platelets treated with TRAP6 (5 µM). Stimulated platelets were able to induce a significant formation of NETs (Figure 6), which was inhibited by Efb68-87, but not with the control peptide for Efb68-87. The incubation of neutrophils with the above agonists in the absence of platelets did not lead to formation of NETs. Direct stimulation of NETs by neutrophil treatment with PMA was used as positive control, which was not affected by Efb68-87 (data not shown). ticle h e This article is protected by copyright. All rights reserved DISCUSSION r Discovery of their involvement in inflammatory responses and vascular degeneration has added an important new chapter in our understanding of the role of platelets in health and disease. In addition to the release of pro-inflammatory cytokines (35), the function of platelets in inflammatory processes involves the formation of PLAs, which mediate homing and extravasation of leukocytes at the site of vascular damage (6, 36). The interaction of P-selectin with PSGL-1 is the key molecular event for PLA formation (4). Other key surface receptors involved in PLA formation are activated in response to P- selectin-PSGL-1 interaction. The activation of the leukocyte integrin αMβ2 (macrophage-1 antigen or MAC-1) by P-selectin-PSGL-1 interaction, for example, is a key step in the formation of heterotypic complexes between platelets and leukocytes (37). In addition to linking inflammation with platelet activation and thrombus formation, and supporting the concept of thromboinflammation (38), the formation of PLAs has far-reaching consequences for cardiovascular health. Formation of heterotypic complexes between platelets and monocytes regulates the coagulation cascade through the upregulation of tissue factor (39), which exacerbates the thrombotic risk for patients with a variety of conditions, including COVID-19 (40). epted Ar The P-selectin/PSGL-1 axis is therefore an attractive target for the development of novel antiinflammatory and vasculoprotective drugs. Although some reduction of PLAs can be achieved by traditional antiplatelet therapy (41), it is important to find strategies for achieving more comprehensive abatement of PLAs and avoiding the bleeding risk associated with existing antithrombotics. This makes the development of a safe and efficacious P-selectin antagonist an attractive therapeutic option in cardiovascular Acc This article is protected by copyright. All rights reserved medicine. Although several P-selectin antagonists have been described and proposed as candidates for drug development, there is currently no P-selectin inhibitor validated for clinical use. Recombinantly expressed vimentin (42), synthetic glycomimetics of the N- terminus of PSGL-1 (43) and anti-P-selectin antibodies (44) have been characterised for their ability to compete with PLA formation in vitro and in vivo, while a promising small molecule failed to show any effect in vivo (45). The cost and pharmacokinetic properties of full recombinant proteins, large post-translationally modified peptides or antibodies make the search for novel candidate antagonists for P-selectin a relevant, timely and unresolved challenge for vascular drug discovery. In this study, we therefore followed a different approach. This article is protected by copyright. All rights reserved DISCUSSION r Efb68-87 represents a promising candidate for the development of a novel pharmacological agent with antiinflammatory or antithrombotic properties based on antagonism of P- selectin and inhibition of PLA formation. This approach would have the advantage of leaving unaffected the haemostatic function of platelets, which should reduce or abolish any bleeding side effects. The use of current antiplatelet drugs from acetylsalicylic acid (ASA) to P2Y12 antagonists (such as Clopidogrel, Prasugrel and Ticagrelor) to integrin inhibitors (such as Abciximab or Tirofiban) is associated with an increase in haemorrhagic risk for patients (47, 48). This is likely to be the consequence of targeting a molecular pathway normally required for haemostasis (i.e. cyclooxygenases, ADP receptors or integrins). By targeting a surface adhesion molecule such as P-selectin that is not involved in healthy haemostatic responses, Efb68-87 would selectively diminish or abolish the contribution of platelets to the onset and/or progression of thromboinflammation, with little or no risk of causing haemorrhagic complications. We demonstrated in addition that Efb68 87 does not bind to other blood cells (Figure 3A) ted Article with multimerin-1 and thrombospondin-1. Since the interaction of Efb-N with multimerin-1 and thrombospondin-1 was detected with the same approach utilised in this study (i.e. peptide conjugation and platelet protein pull-down), the most likely explanation is that the binding sites for these proteins map outside the Lys68-Glu87 portion of Efb-N. This observation emphasises the modular and multifunctional nature of Efb, with separate or overlapping binding sites for multiple target proteins. The modular multifunctionality of Efb could facilitate further biotechnological applications based on the use of this protein. icle Efb68-87 represents a promising candidate for the development of a novel pharmacological agent with antiinflammatory or antithrombotic properties based on antagonism of P- selectin and inhibition of PLA formation. This approach would have the advantage of leaving unaffected the haemostatic function of platelets, which should reduce or abolish any bleeding side effects. The use of current antiplatelet drugs from acetylsalicylic acid (ASA) to P2Y12 antagonists (such as Clopidogrel, Prasugrel and Ticagrelor) to integrin inhibitors (such as Abciximab or Tirofiban) is associated with an increase in haemorrhagic risk for patients (47, 48). This is likely to be the consequence of targeting a molecular pathway normally required for haemostasis (i.e. cyclooxygenases, ADP receptors or integrins). DISCUSSION r Based on our previous work showing that the bacterial protein Efb binds directly to P-selectin, inhibits its interaction with PSGL-1 and interferes with PLA formation (25), we set out to identify an Efb-derived peptide that retains the ability to bind P-selectin and inhibit PLA formation. Article The peptide we identified is Efb68-87, a twenty amino acid sequence from the N-terminal domain of Efb and part of one of two previously identified Efb binding sites for fibrinogen (30). Efb68-87 binding to platelets is not increased by addition of exogenous fibrinogen and is therefore fibrinogen-independent (Figure 1D). On the other hand, Efb30-67 interacts with platelets only in the presence of exogenous fibrinogen. Efb30-67 corresponds to the other previously identified fibrinogen binding site (30). Interestingly, Efb68-87 shows similar binding affinity to resting and stimulated platelets, but the Efb68-87 binding capacity of platelets (i.e. amount of peptide bound per platelet) is significantly increased by stimulation (Figures 1B and 1C). This binding profile is compatible with a Binding site that is present at a low level on the surface of resting platelets but that undergoes an activation-dependent increase in level. This is characteristic of P-selectin levels which increase on the surface of platelets as a consequence of stimulation-dependent degranulation (i.e. migration to the cell periphery and fusion with the plasma membrane of P-selectin-rich alpha granules) (46). These data were supported by dot blot experiments, which confirmed direct binding of Efb68-87 to P-selectin (Figure 2C). Efb68-99 was also able to bind to P-selectin in the dot blot experiments, although the level of staining was visibly lower. Further experiments would be required to assess whether the residues between Tyr88 and Ala99 may interfere with the binding of P-selectin. It is also noteworthy that contrarily to Efb30-105 (also known as Efb-N) (25), Efb68-87 does not interact Accepted A This article is protected by copyright. All rights reserved with multimerin-1 and thrombospondin-1. Since the interaction of Efb-N with multimerin-1 and thrombospondin-1 was detected with the same approach utilised in this study (i.e. peptide conjugation and platelet protein pull-down), the most likely explanation is that the binding sites for these proteins map outside the Lys68-Glu87 portion of Efb-N. This observation emphasises the modular and multifunctional nature of Efb, with separate or overlapping binding sites for multiple target proteins. The modular multifunctionality of Efb could facilitate further biotechnological applications based on the use of this protein. This article is protected by copyright. All rights reserved Conflict of Interest e The authors declare no conflict of interest. c The authors declare no conflict of interest. c Acknowledgements e The authors would like to thank the DFG-funded Cytometry and Cell Sorting Core Unit at the UKE hospital (Hamburg). This work was funded by the British Heart Foundation for the financial support of SW, SB and GP (FS/17/13/3269), the Werner Otto Foundation for the financial support of NW and GP (BN3/97) and the European Research Council for the support of GP (EU project 101025074). pte Author contribution statement A Author contribution statement SW, NW, HE, MP and AU performed experiments and part of the data analysis for this manuscript (the order reflects the level of involvement in this project). TR, IE and SB provided critical revisions of the manuscript. SB and GP designed the project and planned the experiments. GP wrote the manuscript. d A DISCUSSION r By targeting a surface adhesion molecule such as P-selectin that is not involved in healthy haemostatic responses, Efb68-87 would selectively diminish or abolish the contribution of platelets to the onset and/or progression of thromboinflammation, with little or no risk of causing haemorrhagic complications. ted Arti We demonstrated in addition that Efb68-87 does not bind to other blood cells (Figure 3A) and that Efb68-87 does not interfere with the activation and function of platelets in response to physiological stimuli (Figure 4). Efb68-87 can therefore be used as a tool to selectively label platelets without affecting their responsiveness, which could find application in research and diagnostic laboratory practice. The ability to sequester platelets from whole blood (Figure 3B) could be investigated further to develop a novel platelet isolation method. Since Efb68-87 displayed increased binding to activated platelets (Figure 2B), it may be possible to develop a method to selectively capture activated platelets from whole blood. The selective reduction of the count of circulating activated platelets could find clinical application because an increase in circulating activated platelets is observed in several cardiovascular diseases and is proposed as a disease mechanism leading to thrombosis (49, 50). Accept This article is protected by copyright. All rights reserved In summary, we present here the identification and validation of Efb68-87, a novel P- selectin antagonist derived from the N-terminal domain of the S. aureus protein Efb. In addition to confirming the selective binding to P-selectin, we have established the ability of Efb68-87 to interfere with PLA and platelet-induced NET formation in vitro without affecting platelet signalling and platelet functional responses. As the formation of PLAs and NETs is critical for the progression of vascular inflammation and its association with thrombotic complications, Efb68-87 has the potential to become a clinical tool for the treatment of conditions raging from major blood vessel atherosclerosis to microcirculatory dysfunction. Future clinical studies on this peptide may lead to the development of a novel treatment to help in the battle against thromboinflammatory conditions. rticle In summary, we present here the identification and validation of Efb68-87, a novel P- selectin antagonist derived from the N-terminal domain of the S. aureus protein Efb. In addition to confirming the selective binding to P-selectin, we have established the ability of Efb68-87 to interfere with PLA and platelet-induced NET formation in vitro without affecting platelet signalling and platelet functional responses. DISCUSSION r As the formation of PLAs and NETs is critical for the progression of vascular inflammation and its association with thrombotic complications, Efb68-87 has the potential to become a clinical tool for the treatment of conditions raging from major blood vessel atherosclerosis to microcirculatory dysfunction. Future clinical studies on this peptide may lead to the development of a novel treatment to help in the battle against thromboinflammatory conditions. rticle Data availability statement c Data in this article will be shared upon reasonable requests to the corresponding author by email. Ac This article is protected by copyright. All rights reserved This article is protected by copyright. All rights reserved FIGURE LEGENDS e Figure 1. Synthetic Efb peptides bind human platelets. (A) Structure of Efb and the design of synthetic peptides representing different regions of the Efb N-terminal domain (amino acids 30-105). The signal peptide is shown in light blue, the first fibrinogen binding motif (Fg B1) in red, the second fibrinogen binding motif (Fg B2) in green. Efb peptide binding to resting (B), thrombin-stimulated (C) or fibrinogen-treated (D) platelets. 1 µM FITC-labelled Efb or scrambled control peptides were incubated with isolated human platelets and their binding was assessed by flow cytometry. In C), thrombin stimulation was obtained with 0.1 u/ml human thrombin for 10 minutes, while in D) platelets were treated with 3 mg/ml fibrinogen for 10 minutes. Values are the median fluorescence intensity (MFI) from 10,000 events in five independent experiments (mean ± SEM). Statistical significance was assessed using one-way ANOVA with Bonferroni post- hoc test; P-value < 0.05 (*), P-value < 0.01 (**), P-value < 0.001 (***). Article Figure 2. Efb68-87 binding to platelet P-selectin. (A) Phalloidin-rhodamine (red, 1 U/ml) and FITC-labelled Efb68-87 (green, 2 μM) were used to stain human platelets fixed either before or after stimulation in suspension with TRAP6. FITC-labelled scrambled Efb68-87 was used as control. Images are representative of five independent experiments. The scale bar indicated in white is 10 μm. (B) Using different concentrations of FITC-Efb68-87 (0.1 – 100 μM), Efb68-87 binding affinity to resting and thrombin-stimulated platelets was assessed by flow cytometry. Data are % of the maximal binding values and are mean ± SEM from five independent experiments. (C) The direct interaction of Efb68-87 and P- selectin was confirmed by dot blot. Fc-P-selectin was dotted onto individual nitrocellulose membranes and allowed to dry. After blocking with 5% w/v BSA, each FITC-Efb and FITC-scrambled Efb peptide (0.3 µg/ml of 68-87) was incubated on the membrane. Fluorescence images of the membranes were obtained with a ChemiDoc Scanner (Bio- Rad) at 488 nmexc. The data are representative of six independent measurements. (D) Pull-down experiments performed with Efb68-87 conjugated to agarose beads confirmed P-selectin as the main candidate binding site for this peptide on platelets. Platelet lysate (lane 1), pull-downs with unconjugated beads (lane 2), pull-downs with beads conjugated with scrambled Efb68-87 (lane 3) and pull-downs with beads conjugated with Efb68-87 (lane 4) were compared. The immunoblotting was performed with antibodies for human P- Accepted A This article is protected by copyright. This article is protected by copyright. All rights reserved FIGURE LEGENDS e All rights reserved This article is protected by copyright. All rights reserved selectin, multimerin-1 or thrombospondin-1. The data are representative of five independent experiments. (E) Binding competition by Fc-PSGL-1. As described for (B), the binding of FITC-Efb68-87 to platelets was assessed by flow cytometry in the presence of different concentrations of Fc-PSGL-1 (0, 10 or 30 µM). Values are the median fluorescence intensity (MFI) from 10,000 events. Statistical significance was assessed using one-way ANOVA with Bonferroni post-hoc test: P-value < 0.05 (*), P-value < 0.01 (**), P-value < 0.001 (***). icle Figure 3. Efb68-87 binds to platelets in whole blood without interfering with collagen- dependent thrombus formation. (A) CD42b/PE and CD45-APC antibodies were used to distinguish platelets (CD42b+), leukocytes (CD42b-, CD45+) and red blood cells (CD42b-, CD45-) from human blood by flow cytometry. FITC-Efb68-87 binding to each cell population was tested by flow cytometry. Data are mean ± SEM of the MFI values from 10,000 events in 6 independent experiments. Statistical significance was assessed using one-way ANOVA with Bonferroni post-hoc test: P-value < 0.05 (*), P-value < 0.01 (**), P- value < 0.001 (***). (B) Platelet adhesion to Efb68-87 under physiological flow. Platelet adhesion to Efb68-87 was tested at shear stress 200 sec-1 (venous) and 1,000 sec-1 (arterial, not shown). In addition, (C) the effect of Efb68-87 (5 μM) on platelet adhesion and thrombus formation on collagen was tested (1,000 sec-1). Platelets in whole blood were fluorescently labelled with DiOC6 and their surface coverage was assessed by fluorescence imaging/densitometry analysis. Data presented are mean ± SEM of the surface coverage from 6 independent experiments. Statistical significance was assessed using the paired sample Student t-test (normality was assessed by Shapiro-Wilk test): P- value < 0.05 (*), P-value < 0.01 (**), P-value < 0.001 (***). pted Art Figure 4. Efb68-87 does not interfere with the normal functions of platelets. (A) Platelet aggregation induced by thrombin (0.1 U/ml) and collagen (10 μg/ml) was tested in the presence of 5 µM Efb68-87 or scrambled Efb68-87. Representative examples of aggregations from 4 independent experiments are shown and a bar graph shows mean ± SEM. No statistical significance was detected using the paired sample Student t-test. (B) Flow cytometry analysis of platelet activation and degranulation. Resting and thrombin- stimulated (1 U/ml) platelets were compared for degranulation (anti-CD42b/APC) and Acce This article is protected by copyright. All rights reserved This article is protected by copyright. FIGURE LEGENDS e All rights reserved integrin αIIbβ3 activation (anti-PAC-1/FITC) in the presence of 5 µM Efb68-87 or scrambled Efb68-87. A representative forward scattering (FSC) / side scattering (SSC) dot plot of isolated platelets in the presence of Efb68-87 at resting (blue) and thrombin-stimulated (red) is also shown. The statistical significance between Efb68-87 and the control peptide was assessed using one-way ANOVA with Bonferroni post-test; P-value < 0.01 (**), P- value < 0.001 (***), error bars represent mean ± SEM from 4 independent experiments. (C) Platelet signalling was studied by immunoblotting in the presence of Efb68-87 or Efb68- 87 ctrl peptides (10 μM). Platelets were activated with 0.1 U/ml thrombin (in the presence of 1mM EGTA to avoid platelet aggregation and so facilitate protein extraction). Following lysis and SDS-PAGE, lysates were immunoblotted for protein kinase C (PKC) phosphorylated substrates of classical protein kinase C (PKC) isoforms, phosphorylated Src and actin. Data were quantified by densitometry using ImageJ 1.47v, presented as intensity ratio over actin staining (i.e. loading control) and are mean ± SEM from five independent experiments. No statistical significance was detected using a paired sample Student t-test (normality was assessed by Shapiro-Wilk test). Article Figure 5. Efb68-87 inhibits the formation of PLAs in human whole blood. (A) Human blood was stimulated with CRP (1 µg/ml), TRAP6 (5 µM) and LPS from Staphylococcus aureus (1 µg/ml) for 30 minutes. Anti-CD42b/PE and anti-CD45/APC antibodies were used to stain platelets and leukocytes. PLAs were quantified in the top right quadrant of the PE/APC plot. (B) Where indicated, 0.1 - 100 μM Efb68-87 (or control peptide) was co- incubated with the agonists. Data are the number of PLA per 10,000 events (i.e. blood cells) and represent mean ± SEM from five independent experiments. Statistical significance was assessed using one-way ANOVA with Bonferroni post-hoc test: P-value < 0.05 (*), P-value < 0.01 (**), P-value < 0.001 (***). epted Figure 6. Efb68-87 inhibits the formation of platelet-induced NETs. 5 x 104/well neutrophils were seeded into 96-well plates and incubated at 37 ˚C for 1 hour. 5 µM Efb68-87, scrambled control peptide and vehicle solution were added to platelets before stimulation with TRAP6 (5 M). 1 x 106 platelets were added to each well. Negative control wells were prepared by adding either only neutrophils or only platelets with TRAP6 (5 M). The positive control wells are neutrophils treated with 0.1 µM PMA. This article is protected by copyright. All rights reserved FIGURE LEGENDS e The plates were Acc This article is protected by copyright. All rights reserved This article is protected by copyright. All rights reserved incubated for 16 hours at 37 °C with 5% CO2, before fixation in PFA and staining of NETs with Sytox Green. (A) Representative images of selected conditions from five independent experiments were obtained by fluorescence microscopy and are shown in the top panels. (B) The quantification of NET release was obtained by staining of the cell supernatants by fluorescence microplate reading after addition of Sytox green. Data are the mean ± SEM from five independent experiments. Statistical significance was assessed using one-way ANOVA with Bonferroni post-hoc test: P-value < 0.05 (*), P- value < 0.01 (**), P-value < 0.001 (***). ticle REFERENCES r 1. Kubes, P. (2016) The versatile platelet contributes to inflammation, infection, hemostasis, coagulation and cancer. Semin Immunol 28, 535 Ar 1. Kubes, P. (2016) The versatile platelet contributes to inflammation, infection, hemostasis, coagulation and cancer. Semin Immunol 28, 535 Ar 2. Koupenova, M., Clancy, L., Corkrey, H. A., and Freedman, J. E. (2018) Circulating Platelets as Mediators of Immunity, Inflammation, and Thrombosis. Circ Res 122, 337-351 A 3. Thomas, M. R., and Storey, R. F. (2015) The role of platelets in inflammation. Thromb Haemost 114, 449-458 d 4. Dib, P. R. B., Quirino-Teixeira, A. C., Merij, L. B., Pinheiro, M. B. M., Rozini, S. V., Andrade, F. B., and Hottz, E. D. (2020) Innate immune receptors in platelets and platelet-leukocyte interactions. J Leukoc Biol 108, 1157-1182 5. Schrottmaier, W. C., Mussbacher, M., Salzmann, M., and Assinger, A. (2020) Pl t l t l k t i t l d i l di Ath l i 307 109 120 ted 4. Dib, P. R. B., Quirino-Teixeira, A. C., Merij, L. B., Pinheiro, M. B. M., Rozini, S. V., Andrade, F. B., and Hottz, E. D. (2020) Innate immune receptors in platelets and platelet-leukocyte interactions. J Leukoc Biol 108, 1157-1182 ted 4. d j Andrade, F. B., and Hottz, E. D. (2020) Innate immune receptors in platelets and platelet-leukocyte interactions. J Leukoc Biol 108, 1157-1182 Schrottmaier, W. C., Mussbacher, M., Salzmann, M., and Assinger, A. (2020) Platelet-leukocyte interplay during vascular disease. Atherosclerosis 307, 109-120 p 5. Schrottmaier, W. C., Mussbacher, M., Salzmann, M., and Assinger, A. (2020) Platelet-leukocyte interplay during vascular disease. Atherosclerosis 307, 109-120 pt Platelet-leukocyte interplay during vascular disease. Atherosclerosis 307, 109-120 Diacovo, T. G., Roth, S. J., Buccola, J. M., Bainton, D. F., and Springer, T. A. (1996) Neutrophil rolling, arrest, and transmigration across activated, surface- adherent platelets via sequential action of P-selectin and the beta 2-integrin CD11b/CD18. Blood 88, 146-157 Ruparelia, N., Chai, J. T., Fisher, E. A., and Choudhury, R. P. (2017) Inflammatory processes in cardiovascular disease: a route to targeted therapies. Nat Rev Cardiol 14, 133-144 Allen, N., Barrett, T. J., Guo, Y., Nardi, M., Ramkhelawon, B., Rockman, C. B., Hochman, J. S., and Berger, J. S. (2019) Circulating monocyte-platelet aggregates Diacovo, T. G., Roth, S. J., Buccola, J. M., Bainton, D. F., and Springer, T. A. This article is protected by copyright. All rights reserved This article is protected by copyright. All rights reserved REFERENCES r (1996) Neutrophil rolling, arrest, and transmigration across activated, surface- adherent platelets via sequential action of P-selectin and the beta 2-integrin CD11b/CD18. Blood 88, 146-157 p Ruparelia, N., Chai, J. T., Fisher, E. A., and Choudhury, R. P. (2017) Inflammatory processes in cardiovascular disease: a route to targeted therapies. Nat Rev Cardiol 14, 133-144 Ruparelia, N., Chai, J. T., Fisher, E. A., and Choudhury, R. P. (2017) Inflammatory processes in cardiovascular disease: a route to targeted therapies. Nat Rev Cardiol 14, 133-144 Allen, N., Barrett, T. J., Guo, Y., Nardi, M., Ramkhelawon, B., Rockman, C. B., Hochman, J. S., and Berger, J. S. (2019) Circulating monocyte-platelet aggregates 8. c This article is protected by copyright. All rights reserved are a robust marker of platelet activity in cardiovascular disease. Atherosclerosis 282, 11-18 Brown, R. A., Lip, G. Y. H., Varma, C., and Shantsila, E. (2018) Impact of Mon2 monocyte-platelet aggregates on human coronary artery disease. Eur J Clin Invest 48, e12911 9. e 10. Czepluch, F. S., Kuschicke, H., Dellas, C., Riggert, J., Hasenfuss, G., and Schafer, K. (2014) Increased proatherogenic monocyte-platelet cross-talk in monocyte subpopulations of patients with stable coronary artery disease. J Intern Med 275, 144-154 tic 11. Wrigley, B. J., Shantsila, E., Tapp, L. D., and Lip, G. Y. (2013) Increased formation of monocyte-platelet aggregates in ischemic heart failure. Circ Heart Fail 6, 127- 135 Ar 12. Sarma, J., Laan, C. A., Alam, S., Jha, A., Fox, K. A., and Dransfield, I. (2002) Increased platelet binding to circulating monocytes in acute coronary syndromes. Circulation 105, 2166-2171 A 13. Nijm, J., Wikby, A., Tompa, A., Olsson, A. G., and Jonasson, L. (2005) Circulating levels of proinflammatory cytokines and neutrophil-platelet aggregates in patients with coronary artery disease. Am J Cardiol 95, 452-456 d 14. Ivert, T., Dalen, M., Ander, C., Stalesen, R., Lordkipanidze, M., and Hjemdahl, P. (2019) Increased platelet reactivity and platelet-leukocyte aggregation after elective coronary bypass surgery. Platelets 30, 975-981 te Willecke, F., Tiwari, S., Rupprecht, B., Wolf, D., Hergeth, S., Hoppe, N., Dufner, B., Schulte, L., Anto Michel, N., Bukosza, N., Marchini, T., Jackel, M., Stachon, P., Hilgendorf, I., Zeschky, K., Schleicher, R., Langer, H. F., von Zur Muhlen, C., Bode, C., Peter, K., and Zirlik, A. (2014) Interruption of classic CD40L-CD40 signalling but not of the novel CD40L-Mac-1 interaction limits arterial neointima formation in mice. Thromb Haemost 112, 379-389 Simon, D. REFERENCES r I., Chen, Z., Xu, H., Li, C. Q., Dong, J., McIntire, L. V., Ballantyne, C. M., Zhang, L., Furman, M. I., Berndt, M. C., and Lopez, J. A. (2000) Platelet glycoprotein ibalpha is a counterreceptor for the leukocyte integrin Mac-1 (CD11b/CD18). J Exp Med 192, 193-204 p Willecke, F., Tiwari, S., Rupprecht, B., Wolf, D., Hergeth, S., Hoppe, N., Dufner, B., Schulte, L., Anto Michel, N., Bukosza, N., Marchini, T., Jackel, M., Stachon, P., Hilgendorf, I., Zeschky, K., Schleicher, R., Langer, H. F., von Zur Muhlen, C., Bode, C., Peter, K., and Zirlik, A. (2014) Interruption of classic CD40L-CD40 signalling but not of the novel CD40L-Mac-1 interaction limits arterial neointima formation in mice. Thromb Haemost 112, 379-389 p Willecke, F., Tiwari, S., Rupprecht, B., Wolf, D., Hergeth, S., Hoppe, N., Dufner, B., Schulte, L., Anto Michel, N., Bukosza, N., Marchini, T., Jackel, M., Stachon, P., Hilgendorf, I., Zeschky, K., Schleicher, R., Langer, H. F., von Zur Muhlen, C., Bode, C., Peter, K., and Zirlik, A. (2014) Interruption of classic CD40L-CD40 signalling but not of the novel CD40L-Mac-1 interaction limits arterial neointima formation in mice. Thromb Haemost 112, 379-389 p 15. pt Simon, D. I., Chen, Z., Xu, H., Li, C. Q., Dong, J., McIntire, L. V., Ballantyne, C. M., Zhang, L., Furman, M. I., Berndt, M. C., and Lopez, J. A. (2000) Platelet glycoprotein ibalpha is a counterreceptor for the leukocyte integrin Mac-1 (CD11b/CD18). J Exp Med 192, 193-204 16. c This article is protected by copyright. All rights reserved 17. Patko, Z., Csaszar, A., Acsady, G., Peter, K., and Schwarz, M. (2012) Roles of Mac-1 and glycoprotein IIb/IIIa integrins in leukocyte-platelet aggregate formation: stabilization by Mac-1 and inhibition by GpIIb/IIIa blockers. Platelets 23, 368-375 le 17. Patko, Z., Csaszar, A., Acsady, G., Peter, K., and Schwarz, M. (2012) Roles of Mac-1 and glycoprotein IIb/IIIa integrins in leukocyte-platelet aggregate formation: stabilization by Mac-1 and inhibition by GpIIb/IIIa blockers. Platelets 23, 368-375 le 18. Yokoyama, S., Ikeda, H., Haramaki, N., Yasukawa, H., Murohara, T., and Imaizumi, T. (2005) Platelet P-selectin plays an important role in arterial thrombogenesis by forming large stable platelet-leukocyte aggregates. J Am Coll Cardiol 45, 1280-1286 icl 18. l 19. Caudrillier, A., Kessenbrock, K., Gilliss, B. M., Nguyen, J. X., Marques, M. B., Monestier, M., Toy, P., Werb, Z., and Looney, M. R. (2012) Platelets induce neutrophil extracellular traps in transfusion-related acute lung injury. This article is protected by copyright. All rights reserved REFERENCES r J Clin Invest 122, 2661-2671 rti 19. ti 20. Fuchs, T. A., Brill, A., and Wagner, D. D. (2012) Neutrophil extracellular trap (NET) impact on deep vein thrombosis. Arterioscler Thromb Vasc Biol 32, 1777-1783 A 21. Fuchs, T. A., Brill, A., Duerschmied, D., Schatzberg, D., Monestier, M., Myers, D. D., Jr., Wrobleski, S. K., Wakefield, T. W., Hartwig, J. H., and Wagner, D. D. (2010) Extracellular DNA traps promote thrombosis. Proc Natl Acad Sci U S A 107, 15880-15885 d A 22. Farkas, A. Z., Farkas, V. J., Gubucz, I., Szabo, L., Balint, K., Tenekedjiev, K., Nagy, A. I., Sotonyi, P., Hidi, L., Nagy, Z., Szikora, I., Merkely, B., and Kolev, K. (2019) Neutrophil extracellular traps in thrombi retrieved during interventional treatment of ischemic arterial diseases. Thromb Res 175, 46-52 ted 23. Sharma, S., Hofbauer, T. M., Ondracek, A. S., Chausheva, S., Alimohammadi, A., Artner, T., Panzenboeck, A., Rinderer, J., Shafran, I., Mangold, A., Winker, R., Wohlschlager-Krenn, E., Moser, B., Taghavi, S., Klepetko, W., Preissner, K. T., and Lang, I. M. (2021) Neutrophil extracellular traps promote fibrous vascular occlusions in chronic thrombosis. Blood 137, 1104-1116 ept 24. Etulain, J., Martinod, K., Wong, S. L., Cifuni, S. M., Schattner, M., and Wagner, D. D. (2015) P-selectin promotes neutrophil extracellular trap formation in mice. Blood 126, 242-246 cc 25. Posner, M. G., Upadhyay, A., Abubaker, A. A., Fortunato, T. M., Vara, D., Canobbio, I., Bagby, S., and Pula, G. (2016) Extracellular Fibrinogen-binding Ac 25. Posner, M. G., Upadhyay, A., Abubaker, A. A., Fortunato, T. M., Vara, D., Canobbio, I., Bagby, S., and Pula, G. (2016) Extracellular Fibrinogen-binding Ac This article is protected by copyright. All rights reserved Protein (Efb) from Staphylococcus aureus Inhibits the Formation of Platelet- Leukocyte Complexes. J Biol Chem 291, 2764-2776 e Protein (Efb) from Staphylococcus aureus Inhibits the Formation of Platelet- Leukocyte Complexes. J Biol Chem 291, 2764-2776 e 26. Shannon, O., Uekotter, A., and Flock, J. I. (2005) Extracellular fibrinogen binding protein, Efb, from Staphylococcus aureus as an antiplatelet agent in vivo. Thromb Haemost 93, 927-931 cle 27. Shannon, O., and Flock, J. I. (2004) Extracellular fibrinogen binding protein, Efb, from Staphylococcus aureus binds to platelets and inhibits platelet aggregation. Thromb Haemost 91, 779-789 tic 28. Zhang, X., Liu, Y., Gao, Y., Dong, J., Mu, C., Lu, Q., Shao, N., and Yang, G. (2011) Inhibiting platelets aggregation could aggravate the acute infection caused by Staphylococcus aureus. This article is protected by copyright. All rights reserved REFERENCES r Platelets 22, 228-236 rt 29. Hammel, M., Sfyroera, G., Ricklin, D., Magotti, P., Lambris, J. D., and Geisbrecht, B. V. (2007) A structural basis for complement inhibition by Staphylococcus aureus. Nat Immunol 8, 430-437 A 30. Ko, Y. P., Liang, X., Smith, C. W., Degen, J. L., and Hook, M. (2011) Binding of Efb from Staphylococcus aureus to fibrinogen blocks neutrophil adherence. J Biol Chem 286, 9865-9874 d A 31. Lee, L. Y., Hook, M., Haviland, D., Wetsel, R. A., Yonter, E. O., Syribeys, P., Vernachio, J., and Brown, E. L. (2004) Inhibition of complement activation by a secreted Staphylococcus aureus protein. J Infect Dis 190, 571-579 ed 32. Ko, Y. P., Kuipers, A., Freitag, C. M., Jongerius, I., Medina, E., van Rooijen, W. J., Spaan, A. N., van Kessel, K. P., Hook, M., and Rooijakkers, S. H. (2013) Phagocytosis escape by a Staphylococcus aureus protein that connects complement and coagulation proteins at the bacterial surface. PLoS Pathog 9, e1003816 ept 33. Jongerius, I., von Kockritz-Blickwede, M., Horsburgh, M. J., Ruyken, M., Nizet, V., and Rooijakkers, S. H. (2012) Staphylococcus aureus virulence is enhanced by secreted factors that block innate immune defenses. J Innate Immun 4, 301-311 34. Brinkmann, V., Laube, B., Abu Abed, U., Goosmann, C., and Zychlinsky, A. (2010) Neutrophil extracellular traps: how to generate and visualize them. J Vis Exp 35. Bakogiannis, C., Sachse, M., Stamatelopoulos, K., and Stellos, K. (2019) Platelet- derived chemokines in inflammation and atherosclerosis. Cytokine 122, 154157 Acce 33. Jongerius, I., von Kockritz-Blickwede, M., Horsburgh, M. J., Ruyken, M., Nizet, V., and Rooijakkers, S. H. (2012) Staphylococcus aureus virulence is enhanced by secreted factors that block innate immune defenses. J Innate Immun 4, 301-311 ce 33. Jongerius, I., von Kockritz-Blickwede, M., Horsburgh, M. J., Ruyken, M., Nizet, V., and Rooijakkers, S. H. (2012) Staphylococcus aureus virulence is enhanced by secreted factors that block innate immune defenses. J Innate Immun 4, 301-311 ce 34. Brinkmann, V., Laube, B., Abu Abed, U., Goosmann, C., and Zychlinsky, A. (2010) Neutrophil extracellular traps: how to generate and visualize them. J Vis Exp c 35. Bakogiannis, C., Sachse, M., Stamatelopoulos, K., and Stellos, K. (2019) Platelet- derived chemokines in inflammation and atherosclerosis. Cytokine 122, 154157 A 36. Diacovo, T. G., Puri, K. D., Warnock, R. A., Springer, T. A., and von Andrian, U. H. (1996) Platelet-mediated lymphocyte delivery to high endothelial venules. Science 273, 252-255 e 37. This article is protected by copyright. All rights reserved REFERENCES r Wang, H. B., Wang, J. T., Zhang, L., Geng, Z. H., Xu, W. L., Xu, T., Huo, Y., Zhu, X., Plow, E. F., Chen, M., and Geng, J. G. (2007) P-selectin primes leukocyte integrin activation during inflammation. Nat Immunol 8, 882-892 cl 38. Totani, L., and Evangelista, V. (2010) Platelet-leukocyte interactions in cardiovascular disease and beyond. Arterioscler Thromb Vasc Biol 30, 2357-2361 tic 38. Totani, L., and Evangelista, V. (2010) Platelet-leukocyte interactions in cardiovascular disease and beyond. Arterioscler Thromb Vasc Biol 30, 2357-2361 ti 39. Steiner, S., Seidinger, D., Huber, K., Kaun, C., Minar, E., and Kopp, C. W. (2003) Effect of glycoprotein IIb/IIIa antagonist abciximab on monocyte-platelet aggregates and tissue factor expression. Arterioscler Thromb Vasc Biol 23, 1697- 1702 Art 40. Hottz, E. D., Azevedo-Quintanilha, I. G., Palhinha, L., Teixeira, L., Barreto, E. A., Pao, C. R. R., Righy, C., Franco, S., Souza, T. M. L., Kurtz, P., Bozza, F. A., and Bozza, P. T. (2020) Platelet activation and platelet-monocyte aggregate formation trigger tissue factor expression in patients with severe COVID-19. Blood 136, 1330-1341 d A 41. Cao, Y. J., Wang, Y. M., Zhang, J., Zeng, Y. J., and Liu, C. F. (2009) The effects of antiplatelet agents on platelet-leukocyte aggregations in patients with acute cerebral infarction. J Thromb Thrombolysis 27, 233-238 ed 42. Lam, F. W., Da, Q., Guillory, B., and Cruz, M. A. (2018) Recombinant Human Vimentin Binds to P-Selectin and Blocks Neutrophil Capture and Rolling on Platelets and Endothelium. J Immunol 200, 1718-1726 pt 43. Chaikof, E. L., Wong, D. J., Park, D. D., Park, S. S., Haller, C., Chen, J., Dai, E., Liu, L., Mandhapati, A. R., Eradi, P., Dhakal, B., Wever, W., Hanes, M., Sun, L., and Cummings, R. D. (2021) A PSGL-1 Glycomimetic Reduces Thrombus Burden Without Affecting Hemostasis. Blood cep 43. Chaikof, E. L., Wong, D. J., Park, D. D., Park, S. S., Haller, C., Chen, J., Dai, E., Liu, L., Mandhapati, A. R., Eradi, P., Dhakal, B., Wever, W., Hanes, M., Sun, L., and Cummings, R. D. (2021) A PSGL-1 Glycomimetic Reduces Thrombus Burden Without Affecting Hemostasis. Blood cep 44. Kling, D., Stucki, C., Kronenberg, S., Tuerck, D., Rheaume, E., Tardif, J. C., Gaudreault, J., and Schmitt, C. (2013) Pharmacological control of platelet- leukocyte interactions by the human anti-P-selectin antibody inclacumab-- preclinical and clinical studies. Thromb Res 131, 401-410 Acc This article is protected by copyright. All rights reserved 45. REFERENCES r Japp, A. G., Chelliah, R., Tattersall, L., Lang, N. N., Meng, X., Weisel, K., Katz, A., Burt, D., Fox, K. A., Feuerstein, G. Z., Connolly, T. M., and Newby, D. E. (2013) Effect of PSI-697, a novel P-selectin inhibitor, on platelet-monocyte aggregate formation in humans. J Am Heart Assoc 2, e006007 le 46. Vandendries, E. R., Furie, B. C., and Furie, B. (2004) Role of P-selectin and PSGL-1 in coagulation and thrombosis. Thromb Haemost 92, 459-466 c 47. Palmerini, T., Bacchi Reggiani, L., Della Riva, D., Romanello, M., Feres, F., Abizaid, A., Gilard, M., Morice, M. C., Valgimigli, M., Hong, M. K., Kim, B. K., Jang, Y., Kim, H. S., Park, K. W., Colombo, A., Chieffo, A., Ahn, J. M., Park, S. J., Schupke, S., Kastrati, A., Montalescot, G., Steg, P. G., Diallo, A., Vicaut, E., Helft, G., Biondi-Zoccai, G., Xu, B., Han, Y., Genereux, P., Bhatt, D. L., and Stone, G. W. (2017) Bleeding-Related Deaths in Relation to the Duration of Dual-Antiplatelet Therapy After Coronary Stenting. J Am Coll Cardiol 69, 2011-2022 Artic 47. i 48. Costa, F., Van Klaveren, D., Feres, F., James, S., Raber, L., Pilgrim, T., Hong, M. K., Kim, H. S., Colombo, A., Steg, P. G., Bhatt, D. L., Stone, G. W., Windecker, S., Steyerberg, E. W., Valgimigli, M., and Investigators, P.-D. S. (2019) Dual Antiplatelet Therapy Duration Based on Ischemic and Bleeding Risks After Coronary Stenting. J Am Coll Cardiol 73, 741-754 d A 49. Xu, Y., Huo, Y., Toufektsian, M. C., Ramos, S. I., Ma, Y., Tejani, A. D., French, B. A., and Yang, Z. (2006) Activated platelets contribute importantly to myocardial reperfusion injury. Am J Physiol Heart Circ Physiol 290, H692-699 te 49. Xu, Y., Huo, Y., Toufektsian, M. C., Ramos, S. I., Ma, Y., Tejani, A. D., French, B. A., and Yang, Z. (2006) Activated platelets contribute importantly to myocardial reperfusion injury. Am J Physiol Heart Circ Physiol 290, H692-699 te 50. Huo, Y., Schober, A., Forlow, S. B., Smith, D. F., Hyman, M. C., Jung, S., Littman, D. R., Weber, C., and Ley, K. (2003) Circulating activated platelets exacerbate atherosclerosis in mice deficient in apolipoprotein E. Nat Med 9, 61-67 pt 50. Huo, Y., Schober, A., Forlow, S. B., Smith, D. F., Hyman, M. C., Jung, S., Littman, D. R., Weber, C., and Ley, K. (2003) Circulating activated platelets exacerbate atherosclerosis in mice deficient in apolipoprotein E. REFERENCES r Nat Med 9, 61-67 pt Accep This article is protected by copyright. All rights reserved This article is protected by copyright. All rights reserved This article is protected by copyright. All rights reserved This article is protected by copyright. All rights reserved Accepted Artic Acce This article is protected by copyright. All rights reserved This article is protected by copyright. All rights reserved Accepted Article p ted p
https://openalex.org/W2034335226
https://europepmc.org/articles/pmc2361479?pdf=render
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A randomised controlled trial of nurse-managed trial conclusion following early phase cancer trial participation
British journal of cancer
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A randomised controlled trial of nurse-managed trial conclusion following early phase cancer trial participation Clinical Studies K Cox*,1, E Wilson1, A Arthur1, R Elkan1 and S Armstrong2 K Cox*,1, E Wilson1, A Arthur1, R Elkan1 and S Armstrong2 K Cox*,1, E Wilson1, A Arthur1, R Elkan1 and S Armstrong2 1School of Nursing, University of Nottingham, Faculty of Medicine and Health Sciences, University of Nottingham, Nottingham NG7 2UH, UK; 2Trent Institute for Health Services Research, University of Nottingham, Faculty of Medicine and Health Sciences, University of Nottingham, Nottingham NG7 2UH, UK g 1School of Nursing, University of Nottingham, Faculty of Medicine and Health Sciences, University of Nottingham, Nottingham NG7 2UH, UK; 2Trent Institute for Health Services Research, University of Nottingham, Faculty of Medicine and Health Sciences, University of Nottingham, Nottingham NG7 2UH, UK The effect of a nurse-managed intervention, for early phase cancer trial participants at trial conclusion, on psychosocial outcomes was evaluated at two cancer centres in the Midlands, England using a randomised controlled trial. It involved 117 patients who were participating in an early phase cancer clinical trial. It was a nurse-managed trial exit, which included a trial exit interview, trial feedback information leaflet and telephone follow-up compared with standard care at trial conclusion. Psychological distress at 1 week and 4– 6 weeks post-trial conclusion, patient’s knowledge and understanding and patient’s satisfaction were assessed. The results showed there was no significant difference between the two groups regarding scores for anxiety and depression at time one and time two. There is some suggestion that the intervention reduced anxiety from trial conclusion to follow-up (P ¼ 0.27). Patients in both groups felt they had contributed to cancer research through trial participation. However, intervention patients were more likely to feel that they knew how the trial was going (Po0.001), knew how other people in the trial were doing (P ¼ 0.001), had all the feedback they needed about the trial they took part in (Po0.01) and knew how they would be followed up (P ¼ 0.02). Patient satisfaction with the intervention was high (median score ¼ 4.5 where 5 is greatest satisfaction). In conclusion, nurse-managed trial conclusion led to positive outcomes for patients who had recently completed a clinical trial. p p y p British Journal of Cancer (2005) 93, 41–45. doi:10.1038/sj.bjc.6602675 www.bjcancer.com p p y p British Journal of Cancer (2005) 93, 41–45. British Journal of Cancer (2005) 93, 41 – 45 & 2005 Cancer Research UK All rights reserved 0007 – 0920/05 $30.00 British Journal of Cancer (2005) 93, 41 – 45 & 2005 Cancer Research UK All rights reserved 0007 – 0920/05 $30.00 British Journal of Cancer (2005) 93, 41 – 45 www.bjcancer.com A randomised controlled trial of nurse-managed trial conclusion following early phase cancer trial participation EW participated in setting up the study, was responsible for data collection, management and entry, participated in the data analysis and helped produce the final report. RE helped analyse the qualitative data and helped produce the final report. SA provided advice and support for the randomisation aspects of the study and TA helped with the statistical analysis and presentation of the data. KC, TA and EW wrote the paper. All authors commented on all drafts. KC and EW are the guarantors. Received 18 February 2005; revised 11 April 2005; accepted 24 April 2005; published online 28 June 2005 A randomised controlled trial of nurse-managed trial conclusion following early phase cancer trial participation doi:10.1038/sj.bjc.6602675 www.bjcancer.com Published online 28 June 2005 & 2005 Cancer Research UK Keywords: clinical trials; nurse-managed care, randomised controlled trial; trial conclusion The management of trial conclusion is a neglected area. Staff resource in terms of support, time and information is directed at the stage of trial recruitment and trial participation. However, trials staff have an ethical responsibility to ensure appropriate support for those who have been research participants (Harth and Thong, 1995). Participation in clinical trials of new anticancer drugs has become an increasingly common treatment experience of individuals with cancer. This is due, in part, to an increasing societal demand for new treatments and the need to test these treatments in a systematic way (DOH, 1992). However, until recently there has been relatively little attention paid to the impact of the experience of clinical trials on those who participate in them (Mackillop and Johnston, 1986; Gotay, 1991; Kodish et al, 1992). There is evidence from qualitative research that trial conclusion is the most difficult time for the subjects of clinical research, who often feel abandoned, want feedback about the trial they took part in and have unmet information and psychosocial needs (Cox, 2000). p p g One of the ways individuals cope with cancer is that they seek more information (Weisman, 1979). If information is given effectively, anxiety and side effects of treatment can be reduced, enhancing an individuals ability to cope with their illness (Ridgeway and Matthews, 1982; Slevin et al, 1996). Recognising and meeting the very specific information and support require- ments at trial conclusion may be one way that on-going psychosocial support can be provided to trial patients and enable them and their families to cope better with trial conclusion. The study presented in this paper sought to provide an alternative model of trial conclusion management, which responded to the issues identified above and establish if this improved the trial conclusion experience for patients. In this study, trial conclusion is defined as the point in time when a patient has completed the planned course of treatment or they were withdrawn due to unacceptable toxicity or lack of response. *Correspondence: Professor K Cox; E-mail: Karen.cox@Nottingham.ac.uk Contributors: KC initiated the study, participated in the study set up, supervised the training of the trial nurses, helped analyse the data and produce the final report. Received 18 February 2005; revised 11 April 2005; accepted 24 April *Correspondence: Professor K Cox; E-mail: Karen.cox@Nottingham.ac.uk Contributors: KC initiated the study, participated in the study set up, supervised the training of the trial nurses, helped analyse the data and produce the final report. EW participated in setting up the study, was responsible for data collection, management and entry, participated in the data analysis and helped produce the final report. RE helped analyse the qualitative data and helped produce the final report. SA provided advice and support for the randomisation aspects of the study and TA helped with the statistical analysis and presentation of the data. KC, TA and EW wrote the paper. All authors commented on all drafts. KC and EW are the guarantors. Intervention p Psychological distress was measured using the Hospital Anxiety and Depression Scale (HADs) (Zigmond and Snaith, 1983) generating individual scores for anxiety and depression, both ranging from 0 to 21 with higher scores indicating a greater degree of anxiety or depression. Psychological and physical distress was also measured using the Rotterdam Symptom Checklist (Pruyn et al, 1980; de Haes et al, 1990). Psychological and physical distress scores were standardised so they represented a percentage of the maximum score with higher scores representing greater distress. Hopwood et al (1991) note that the HADs and the RSCL may screen out different individuals with affective disorders. With these factors in mind it was appropriate to use both the RSCL and the HADs in this study in order to assess psychological distress at trial conclusion. To assess satisfaction with the intervention patients in the intervention arm of the study also completed the Medical Interview Satisfaction Scale (MISS) (Wolf et al, 1978). The tool was designed to measure satisfaction with medical consultations/ interviews. While this tool is acknowledged as being a relatively crude measure, as responses on these kinds of scales tend to be skewed towards the satisfied (Ware and Hays, 1988), it was felt that it would provide some indication of patient’s satisfaction with the trial exit interview at data point one which could then be elaborated on in subsequent interviews at data point two. The reliability and validity of the tool has not been extensively tested but Kinnersley et al (1996) noted in a comparison of methods to measure satisfaction with consultations in primary care that levels of reliability for the overall scale and subscales was fair to good for the MISS. The tool was adapted for use in this study to refer to nurses rather than doctors and has 26 items that measure satisfaction with the affective, behavioural and cognitive aspects of medical encounters. The adaptation primarily involved substituting the word doctor with nurse and substituting reference to being ill to being in a trial. The intervention was developed in the light of findings from our earlier work (Cox, 2000), discussions with consultant oncologists, trials nurses and patients and families who were asked if they would comment on ideas and information sheets. This preliminary work and the findings from the earlier study indicated that the intervention would consist of three elements (see Box 1). Randomisation A computer-generated list of random codes using block randomi- sation was generated by SA and held by a research secretary. Participants to our study were randomly allocated following recruitment to the study. Each participant had an equal chance of being allocated to the intervention group (nurse-managed follow- up) or the control group (standard care). Clinical Studies Clinical Studies Intervention In addition to standard care, the trial exit interview and feedback leaflet were delivered in the week following trial conclusion and the telephone call was undertaken 2 weeks after trial conclusion. p The trial nurses who were to be involved in delivering the intervention all underwent a short training session to ensure their understanding of the process of undertaking the trial exit interview, how to complete the trial feedback sheets and how to conduct the telephone interviews. These training sessions were led by KC and EW and were designed to identify any problems with the intervention, make sure the documentation was appropriate and also to ensure that there was a consistency in its implementa- tion. Outcome measures Outcome measures were psychological distress at 1 week and 4–6 weeks post-trial conclusion, patient’s knowledge and under- Box 1 Key components of nurse-managed trial exit intervention Drug trial exit interview K Debriefing of decision around completion/withdrawal K Explanation of further follow-up support Information leaflet K A thank you for participating in the trial K Latest information about the drug being tested K News about other participants K Details about the participant’s contribution to cancer research K Available support after drug trial participation K Details on further follow-up Telephone follow-up at 2 weeks postdrug trial exit K Enquiry as to general health K Identification of unmet information needs K Emotional support if required Box 1 Key components of nurse-managed trial exit intervention Drug trial exit interview K Debriefing of decision around completion/withdrawal K Explanation of further follow-up support Information leaflet K A thank you for participating in the trial K Latest information about the drug being tested K News about other participants K Details about the participant’s contribution to cancer research K Available support after drug trial participation K Details on further follow-up Telephone follow-up at 2 weeks postdrug trial exit K Enquiry as to general health K Identification of unmet information needs K Emotional support if required Time two Patients completed repeat HADs and RSCL ques- tionnaires and took part in an in-depth interview (not reported here) examining patients’ experience of trial conclusion and follow-up, their knowledge and understanding of the trial out- come and their follow-up care, satisfaction with trial involvement and their care during the trial and adjustment to no longer being in the trial. METHODS The study was conducted in two cancer centres. All patients who were currently undergoing participation in all the phase I or II Nurse-managed trial following early phase cancer trial participation K Cox et al K Cox et al 42 anticancer drug trials underway in the two centres were invited to participate via a letter and information sheet given to them by their trials nurse. Those who agreed provided signed consent. It should be noted that patients offered phase I and II studies are often at the end of their disease trajectory and as such the patients in this study had a limited life expectancy. Ethical approval and NHS Trust approval was granted at each study site. standing and patient’s satisfaction. These were recorded either at the patient’s home or the cancer centre according to patient preference approximately 7–10 days following trial conclusion and after the intervention for the intervention group (time one) and approximately 6 weeks following trial conclusion (time two). Time one An evaluation questionnaire was specifically designed for the study. The questionnaire collected data on patients’ experience of trial conclusion and follow-up, their information requirements, knowledge and understanding of the trial outcome and their follow-up care, satisfaction with trial involvement and their care during the trial and adjustment to no longer being in the trial. Questions ranged from fixed choice, rating scales and likert scales to open comments. Patients either self-completed or completed the form with the researcher according to their personal preference. Standard care For patients allocated to standard care, information, support and follow-up was offered at the end of the drug trial by their trials doctor and consisted of a consultation that covered details of reasons for trial conclusion and a monthly follow-up appointment back at the cancer centre. Sample size Based on previous work (Cox, 2000) at the time of trial conclusion, 38% of patients had mild to severe anxiety as assessed by the HAD scale. It was estimated that through the intervention, this would be decreased by just over half to 15% at time one (taking into account reported prevalence rates for anxiety and depression in popula- tions of cancer patients of around 17% (Derogatis et al, 1983)). The British Journal of Cancer (2005) 93(1), 41 – 45 & 2005 Cancer Research UK & 2005 Cancer Research UK Eligible (n =129) Nurse-managed drug trial exit (n =59) Standard care following drug trial (n =58) Not randomised (n =12): Refused (n =12) Randomised (n =117) Received nurse- managed care and data available at time one (n =46) Did not receive nurse-managed care and data unavailable at time one (n =13): Died (n = 4) Too ill (n = 2) Refused (n =4) Remained on drug trial (n =2) Data incomplete (n =1) Data collected within 7 days of drug trial (n =49) Data unavailable at timeone (n =9): Died (n = 1) Too ill (n =5) Refused (n =1) Remained on drug trial (n =1) Data incomplete (n =1) Data available at time two (n =27) Data unavailable at time two (n =19): Unable to contact (n =6) Died (n = 3) Too ill (n = 10) Data available at time two (n =37) Data unavailable at time two (n =12): Unable to contact (n =8) Died (n = 2) Too ill (n = 2) • • • • • • • • • • • • • • • • • Figure 1 Flow of participants through trial. Nurse-managed trial following early phase cancer trial participation K Cox et al 4 Nurse-managed trial following early phase cancer trial participation K Cox et al n 43 Eligible (n =129) Randomised (n =117) Clinical Studies Nurse-managed drug trial exit (n =59) Standard care following drug trial (n =58) Received nurse- managed care and data available at time one (n =46) Data collected within 7 days of drug trial (n =49) Data available at time two (n =37) Data available at time two (n =37) Figure 1 Flow of participants through trial. required number of patients in each arm of the study was 57 (a ¼ 0.05 (two sided) with 80% power, Machin et al, 1997). participating. RESULTS Figure 1 reports the flow of participants through the study. Between 1 January 2001 and 1 February 2004, 129 patients were approached about participating in the study. A total of 12 chose not to be involved and the remaining 117 (91%) agreed to be part of the study providing signed written consent. These were randomly allocated to either the nurse-led follow-up group (n ¼ 59) or standard care (n ¼ 58). Measures at time one were collected on 46 out of 59 of the intervention group and 49 out of 58 of the control group. The main reasons for drop out were refusal, too ill to participate and death. Sample size There was an equal distribution of patients in both groups across both research sites. There were no obvious differences between the two groups. Anxiety and psychological distress Differences between scores on information received, infor- mation requirements, knowledge and understanding of the trial outcome, anxiety and depression, psychological and physical distress were compared between groups using the Mann–Whitney U test because the distribution of the scores was skewed. Table 2 presents the HADS median scores for anxiety and depression and the RSCL median scores for psychological and physical distress at the two data collection points for both the intervention and the control groups. The median scores for both anxiety and depression for these patients over the course of trial participation were within the normal range for both the HADs (0– 7) (Zigmond and Snaith, 1983). The average scores for psychological distress for these patients were comparable with those published by de Haes et al (1990) for patients receiving chemotherapy. There was no significant difference between the two groups regarding scores for anxiety and depression, psychological distress or physical distress at trial conclusion or follow-up. In the intervention group there was a greater reduction in the anxiety scores from baseline to follow-up (1.2) compared to the control group (0.6), although this was not statistically significant (P ¼ 0.27). & 2005 Cancer Research UK Satisfaction with the intervention A total of 44 respondents in the intervention group (from a possible 47) completed the MISS. Satisfaction with all elements (cognitive, emotional and behavioural) of the trial exit interview was good. Overall patient satisfaction with the intervention was high (median score ¼ 4.5 where 5 is greatest satisfaction). Clinical Studies DISCUSSION An individuals desire for ‘feedback’ and the provision of information about how the trial is going can be seen in the context of the process of adaptation within the context of life threatening situations (Turnquist et al, 1988), a kind of ‘search for meaning’. Research in this area suggests that an individual’s ability to search for and find a meaning in their illness and treatment may have a significant impact on psychosocial well-being and adjustment to the impact of cancer on their lives (Lewis, 1989; Luker et al, 1996). Providing feedback and information about the trial, an individual has participated in may be one way that on-going psychosocial support for patients can be offered and the contribution made through their trial participation acknowledged. This requirement is even more important in this particular group of patients who are at the end of their disease trajectory, have a limited life Distress and Psychological Distress scores within 7 days of trial exit and after 4–6 weeks Table 2 Anxiety, Depression Physical Distress and Psychological Distress scores within 7 days of trial exit and after 4–6 weeks Intervention mean (s.d.) Control mean (s.d.) P-valuea HADS Anxiety Scores Within 7 days 4.7 (4.2) (n ¼ 46) 4.8 (3.9) (n ¼ 49) 4–6 weeks 3.6 (3.8) (n ¼ 27) 4.4 (3.7) (n ¼ 37) Change over time 1.2 (3.6) (n ¼ 27) 0.6 (2.7) (n ¼ 37) 0.27 HADS Depression Scores Within 7 days 5.2 (4.3) (n ¼ 46) 4.9 (3.3) (n ¼ 49) 4–6 weeks 5.3 (5.0) (n ¼ 27) 4.7 (3.8) (n ¼ 37) Change over time 0.2 (2.7) (n ¼ 27) 0.2 (3.3) (n ¼ 27) 0.51 RSCL Physical Distress Scores Within 7 days 23.8 (13.8) (n ¼ 46) 20.4 (10.5) (n ¼ 49) 4–6 weeks 20.4 (14.7) (n ¼ 27) 18.9 (13.3) (n ¼ 37) Change over time 2.6 (13.8) (n ¼ 27) –2.2 (14.0) (n ¼ 37) 0.73 RSCL Psychological Distress Scores Within 7 days 21.8 (24.0) (n ¼ 46) 23.4 (18.9) (n ¼ 49) 4–6 weeks 18.9 (20.3) (n ¼ 27) 23.0 (20.4) (n ¼ 37) Change over time 2.3 (20.4) (n ¼ 27) 2.3 (18.4) (n ¼ 37) 0.49 aBetween groups, Mann–Whitney U test. Knowledge and understanding of the trial outcome and follow-up Table 3 presents respondents views on information needs and contribution made to cancer research. There were significant differences between those in the intervention group when compared to those in the control group in relation to the statements; I feel I know how the trial is going (Po0.001), I feel I know how other people in the trial are doing (P ¼ 0.001), I feel I p p Demographic and other characteristics for the two study groups at drug trial conclusion are reported in Table 1. More men were included in the study than women, the average age was just under 60 years and the majority was married. Patients were likely to have one of the common solid tumours. Patients were more likely to have been withdrawn from the trial in which they were British Journal of Cancer (2005) 93(1), 41 – 45 Table 1 Demographic factors, tumour and clinical trial type by study group Intervention group (n ¼ 59) Control group (n ¼ 58) Gender Male : female 1.1 : 1 1.4 : 1 Age in years Mean (s.d.) 59.8 (11.6) 57.4 (10.8) Marital status n (%) Living with spouse/partner 53 (89.8) 45 (81.8) Divorced 3 (5.1) 3 (5.5) Widowed 1 (1.7) 4 (7.3) Single 2 (3.4) 3 (5.5) Missing 3 Tumour type n (%) Breast 7 (12.1%) 5 (8.6%) Lung 8 (13.8%) 7 (12.1%) Upper GI 7 (12.1%) 10 (17.2%) Ovary 7 (12.1%) 5 (8.6%) Colorectal 11 (19.0%) 11 (19.0%) Other 18 (31.0%) 20 (34.5%) Drug Trial centre n (%) Centre 1 52 (88.1%) 51 (87.9%) Centre 2 7 (11.9%) 7 (12.1) Completed drug trial n (%) Yes 17 (28.8%) 20 (34.5%) No 42 (71.2%) 38 (65.5%) Days spent on drug trial Mean (s.d.) 96.8 (68.2) 97.8 (54.0) Nurse-managed trial following early phase cancer trial participation K Cox et al 44 Clinical Studies Nurse-managed trial following early phase cancer trial participation K Cox et al have had all the feedback that I need about the trial I took part in (Po0.01) and I feel I know how I will be followed up now I am no longer in the trial (P ¼ 0.02) with those in the intervention group indicating significantly higher levels of agreement with the statements. Interestingly, both groups felt that they had con- tributed to cancer research by taking part in the trial with no difference between the groups (P ¼ 0.11). aMann–Whitney U test. CONCLUSIONS expectancy, have complex needs and who are participating in a drug trial that is unlikely to have any therapeutic benefit (Estey et al, 1986; Marsoni et al, 1987; Decoster et al, 1990). With this underpinning rationale we designed an intervention to meet these needs. The findings show that nurse-managed trial conclusion meets patients’ information needs at trial conclusion. The intervention was acceptable to patients and this study supports previous work in relation to the acceptability of nurse-managed follow-up and satisfaction with this kind of care delivery (Moore et al, 2002). It would appear that, while there was no significant difference between the intervention and control group in terms of anxiety and depression levels at base line and follow-up, anxiety was reducing over time for those individuals in the intervention arm of the study but this requires further testing. Overall, the intervention was effective in providing patients with information and feedback about the trial that had been identified as a specific need at trial conclusion in our earlier work. expectancy, have complex needs and who are participating in a drug trial that is unlikely to have any therapeutic benefit (Estey et al, 1986; Marsoni et al, 1987; Decoster et al, 1990). With this underpinning rationale we designed an intervention to meet these needs. The findings show that nurse-managed trial conclusion meets patients’ information needs at trial conclusion. The intervention was acceptable to patients and this study supports previous work in relation to the acceptability of nurse-managed follow-up and satisfaction with this kind of care delivery (Moore et al, 2002). It would appear that, while there was no significant difference between the intervention and control group in terms of anxiety and depression levels at base line and follow-up, anxiety was reducing over time for those individuals in the intervention arm of the study but this requires further testing. Overall, the intervention was effective in providing patients with information and feedback about the trial that had been identified as a specific need at trial conclusion in our earlier work. Providing structured support and information at the end of a trial ensures information needs are met and is acceptable to patients. The trial conclusion strategy outlined here would therefore appear to be a simple and effective way to provide on-going psychosocial support to patients once the trial has completed. REFERENCES Luker K, Beaver K, Leinster SJ, Owens RG (1996) Meaning of illness for women with breast cancer. J Adv Nurs 23: 1194–1201 Cox K (2000) Enhancing cancer clinical trial management: recommenda- tions from a qualitative study of trial participants’ experiences. Psycho- Oncology 9: 314–322 Machin D, Campbell MJ, Fayers PM, Pinol A (1997) Sample Size Tables for Clinical Studies. Oxford: Blackwell gy Decoster G, Stein G, Holdener E (1990) Responses and toxic deaths in phase I clinical trials. Ann Oncol 1: 175–182 Mackillop WJ, Johnston PA (1986) Ethical problems in clinical research: the need for empirical studies of the clinical trials process. J Chronic Dis 39(3): 177–188 De Haes JC, Van Knippenberg FC, Neijt JP (1990) Measuring physical and psychological distress in cancer patients: structure and application of the Rotterdam Symptom Checklist. Br J Cancer 62: 1034–1038 Marsoni S, Hoth D, Simon R, Leyland-Jones B (1987) Clinical drug development: an analysis of phase II trials, 1970–1985. Cancer Treat Rep 71(1): 71–80 Department of Health (1992) Assessing the effects of Health Technologies: principles, practice, proposals. Advisory Group on Health Technology Assessment for the Director of Research and Development London: Department of Health Moore S, Corner J, Haviland J, Wells M, Salmon E, Normand C, Brada M, O’Brien M, Smith I (2002) Nurse led follow-up and conventional medical follow-up in management of patients with lung cancer: randomised trial. Br Med J Nov 16(235): 1145–1152 p Derogatis LR, Morrow GR, Fetting J (1983) The prevalence of psychiatric disorders among cancer patients. J Am Med Assoc 249: 751–757 Derogatis LR, Morrow GR, Fetting J (1983) The prevalence of psychiatric disorders among cancer patients. J Am Med Assoc 249: 751–757 Estey E, Hoth D, Simon R, Marsoni S (1986) Therapeutic response in phase I trials of anti-neoplastic agents. Cancer Treat Rep 70(9): 1105–1113 ( ) l l l l d f h Br Med J Nov 16(235): 1145–1152 Pruyn JFA, Van Den Heuvel WJA, Jonkers R (1980) Verantwoording van de klachtenlijst voor kankerpatineten.. Rotterdam: Studiecentrum Sociale Ongologie Estey E, Hoth D, Simon R, Marsoni S (1986) Therapeutic response in phase I trials of anti-neoplastic agents. Cancer Treat Rep 70(9): 1105–1113 ( ) l li i l i l di i f h Gotay CG (1991) Accrual to cancer clinical trials: directions from the research literature. Soc Sci Med 33(5): 569–577 Ridgeway V, Matthews A (1982) Psychological preparation for surgery: a comparison of methods. ACKNOWLEDGEMENTS We would like to thank Professor Veronica James, University of Nottingham for her advice in the early stages of the project. We also thank Professor James Carmichael, Dr Penella Woll, Dr Mike Sokal, Dr Chan and Dr David Fyfe (City Hospital Nottingham), Professor William Steward and Dr Anne Thomas (Leicester Royal Infirmary) for providing access to their clinics and patients. We especially thank the Trial Nurses, Lynn Osbourne, Kath Clayton, Karen Newcombe, Beverly Reynolds, Shameen Asif Suleman, Beverly Scothern, Carol Tasker, Tania Williamson, Emma Buckby, Samantha Moore, Louise Clark, Lynn Furber and Caroline Rosario for providing the nurse led intervention. This project was funded by Cancer Research UK Grant No. CP1037/0201. One key limitation of this study is the lack of power as a result of the high attrition between the two time points. This was perhaps inevitable due the high mortality rate associated with this group of patients. It may also be a reflection of an overestimation of the effect of the intervention in our initial sample size calculations. A further limitation relates to the mode of completion of the questionnaires. Patients completing their questionnaires with the help of a researcher may provide different responses to those who complete alone. CONCLUSIONS It can bridge the gap between the end of the trial and the next follow-up appointment and make a difference to the trial conclusion experience of vulnerable patients. Clinical Studies DISCUSSION Table 2 Anxiety, Depression Physical Distress and Psychological Distress scores within 7 days of trial exit and afte Table 3 Views on information needs and perception of contribution by study group (scores out of five, higher scores indicate greater agreement) Intervention group (n ¼ 46) median (IQR) Control group (n ¼ 49) median (IQR) P-valuea I have contributed to cancer research 5 (5,5) 5 (5,5) 0.11 I know how the trial is currently going 5 (3.75,5) 1 (1,4) o0.0005 I know how other people on the trial are doing 4 (1,5) 1 (1,4) 0.001 I have had all the feedback that I need about the trial I took part in 5 (4,5) 4 (1,5) 0.009 I know how I will be followed up now I am no longer in the trial 5 (5,5) 5 (1,5) 0.022 needs and perception of contribution by study group (scores out of five, higher scores indicate greater agreement) & 2005 Cancer Research UK British Journal of Cancer (2005) 93(1), 41 – 45 British Journal of Cancer (2005) 93(1), 41 – 45 British Journal of Cancer (2005) 93(1), 41 – 45 Nurse-managed trial following early phase cancer trial participation K Cox et al n 45 REFERENCES Br J Clin Psychol 2: 271–280 Harth SC, Thong YH (1995) After-care for participants in clinical research: ethical considerations in an asthma drug trial. J Med Ethics 21: 225–228 Slevin ML, Nichols SE, Downer SM, Wilson P, Lister TA, Arnott S, Maher J, Souhami RL, Tobias JS, Goldstone AH, Cody M (1996) Emotional support for cancer patients: what do patients really want? Br J Cancer 74(8): 1275–1279 Hopwood P, Howell AH, Maguire P (1991) Screening for psychiatric morbidity in patients with advanced breast cancer: validation of two self- report questionnaires. Br J Cancer 64: 353–356 Kinnersley P, Stott N, Peters T, Harvey I, Hackett P (1996) A comparison of methods for measuring patient satisfaction with consultations in primary care. Fam Pract 13(1): 41–51 Turnquist D, Harvey J, Anderson B (1988) Attributions and adjustment to life-threatening illness. Br J Clin Psychol 27(1): 55–65 g y Ware JE, Hays RD (1988) Methods for measuring patient satisfaction with specific medical encounters. Med Care 26: 393–402 specific medical encounters. Med Care 26: 393–402 Kodish E, Stocking C, Ratain MJ, Kohrman A (1992) Ethical issues in Phase I oncology research: a comparison of investigators and review board chairpersons. J Clin Oncol 10(11): 1810–1816 man AD (1979) Coping With Cancer. London: McGraw Hill Weisman AD (1979) Coping With Cancer. London: McGraw Hill W lf MH P SM J A S il WB ( ) Th M di l I i Weisman AD (1979) Coping With Cancer. London: Mc Wolf MH, Putnam SM, James A, Stiles WB (1978) The Medical Interview Satisfaction Scale. J Behav Med 1: 391 Lewis FM (1989) Attributions of control, experienced meaning, and psychosocial well being in patients with advanced cancer. J Pyschosoc Oncol 7: 105–110 Zigmond AS, Snaith RP (1983) The Hospital Anxiety and Depression scale. Acta Psychiatr Scand 67: 361–370 British Journal of Cancer (2005) 93(1), 41 – 45 & 2005 Cancer Research UK
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Effectiveness of the 23-valent pneumococcal polysaccharide vaccine against vaccine serotype pneumococcal pneumonia in adults: A case-control test-negative design study
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PLOS MEDICINE PLOS MEDICINE PLOS MEDICINE RESEARCH ARTICLE Effectiveness of the 23-valent pneumococcal polysaccharide vaccine against vaccine serotype pneumococcal pneumonia in adults: A case-control test-negative design study Hannah LawrenceID1,2, Harry PickID1, Vadsala BaskaranID1,2,3, Priya Daniel4, Chamira Rodrigo1, Deborah AshtonID1, Rochelle C. Edwards-PritchardID5, Carmen SheppardID6, Seyi D. EletuID6, David LittID6, Norman K. FryID6,7, Samuel RoseID6, Caroline Trotter8, Tricia M. McKeever2,3, Wei Shen Lim1* Hannah LawrenceID1,2, Harry PickID1, Vadsala BaskaranID1,2,3, Priya Daniel4, Chamira Rodrigo1, Deborah AshtonID1, Rochelle C. Edwards-PritchardID5, Carmen SheppardID6, Seyi D. EletuID6, David LittID6, Norman K. FryID6,7, Samuel RoseID6, Caroline Trotter8, Tricia M. McKeever2,3, Wei Shen Lim1* Hannah LawrenceID1,2, Harry PickID1, Vadsala BaskaranID1,2,3, Priya Daniel4, Chamira Rodrigo1, Deborah AshtonID1, Rochelle C. Edwards-PritchardID5, Carmen SheppardID6, Seyi D. EletuID6, David LittID6, Norman K. FryID6,7, Samuel RoseID6, Caroline Trotter8, Tricia M. McKeever2,3, Wei Shen Lim1* a1111111111 a1111111111 a1111111111 a1111111111 a1111111111 a1111111111 a1111111111 a1111111111 a1111111111 a1111111111 1 Department of Respiratory Medicine, Nottingham University Hospitals NHS Trust, Nottingham, United Kingdom, 2 Division of Epidemiology and Public Health, University of Nottingham, Nottingham, United Kingdom, 3 NIHR Nottingham Biomedical Research Centre, Queen’s Medical Centre, Nottingham, United Kingdom, 4 Department of Respiratory Medicine, University Hospitals of Derby and Burton NHS Foundation Trust, Derby, United Kingdom, 5 Division of Respiratory Medicine, University of Nottingham, Nottingham, United Kingdom, 6 Respiratory and Vaccine Preventable Bacteria Reference Unit, Public Health England– National Infection Service, Colindale, London, United Kingdom, 7 Immunisation and Countermeasures Division, Public Health England Colindale–National Infection Service, London, United Kingdom, 8 Disease Dynamic Unit, Department of Veterinary Medicine, University of Cambridge, Cambridge, United Kingdom OPEN ACCESS * weishen.lim@nuh.nhs.uk Citation: Lawrence H, Pick H, Baskaran V, Daniel P, Rodrigo C, Ashton D, et al. (2020) Effectiveness of the 23-valent pneumococcal polysaccharide vaccine against vaccine serotype pneumococcal pneumonia in adults: A case-control test-negative design study. PLoS Med 17(10): e1003326. https://doi org/10 1371/journal pmed 1003326 Academic Editor: Mirjam E. E. Kretzschmar, Universitair Medisch Centrum Utrecht, NETHERLANDS Vaccination with the 23-valent pneumococcal polysaccharide vaccine (PPV23) is available in the United Kingdom to adults aged 65 years or older and those in defined clinical risk groups. We evaluated the vaccine effectiveness (VE) of PPV23 against vaccine-type pneu- mococcal pneumonia in a cohort of adults hospitalised with community-acquired pneumonia (CAP). Received: March 13, 2020 Accepted: August 31, 2020 Published: October 23, 2020 Copyright: © 2020 Lawrence et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Background Academic Editor: Mirjam E. E. Kretzschmar, Universitair Medisch Centrum Utrecht, NETHERLANDS * weishen.lim@nuh.nhs.uk Methods and findings Using a case-control test-negative design, a secondary analysis of data was conducted from a prospective cohort study of adults (aged 16 years) with CAP hospitalised at 2 uni- versity teaching hospitals in Nottingham, England, from September 2013 to August 2018. The exposure of interest was PPV23 vaccination at any time point prior to the index admis- sion. A case was defined as PPV23 serotype-specific pneumococcal pneumonia and a con- trol as non-PPV23 serotype pneumococcal pneumonia or nonpneumococcal pneumonia. Pneumococcal serotypes were identified from urine samples using a multiplex immunoas- say or from positive blood cultures. Multivariable logistic regression was used to derive adjusted odds of case status between vaccinated and unvaccinated individuals; VE esti- mates were calculated as (1 −odds ratio) × 100%. Of 2,357 patients, there were 717 PPV23 cases (48% vaccinated) and 1,640 controls (54.5% vaccinated). The adjusted VE (aVE) Data Availability Statement: This study is a secondary analysis of data from a prospective observational cohort study. Posting the raw data would run against our contractual agreement with the funder of the primary study. Please contact researchsponsor@nuh.nhs.uk for data requests. Funding: This study is independent research funded in part by the University of Nottingham’s 2019-20 QR Strategic Priorities Fund and 1 / 17 PLOS Medicine | https://doi.org/10.1371/journal.pmed.1003326 October 23, 2020 PLOS MEDICINE Effectiveness of the PPV23 vaccine against vaccine serotype pneumococcal pneumonia supported by the Nottingham National Institute for Health Research Biomedical Research Centre (NIHR BRC). The study concept was developed and agreed upon by the authors with no input from the funding bodies. The data are the sole responsibility of the authors, and the sponsor for the study was Nottingham University Hospitals NHS Trust. The views expressed in this publication are those of the authors and not necessarily those of the NHS, the NIHR, JCVI, or PHE. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript. estimate against PPV23 serotype disease was 24% (95% CI 5%–40%, p = 0.02). Estimates were similar in analyses restricted to vaccine-eligible patients (n = 1,768, aVE 23%, 95% CI 1%–40%) and patients aged 65 years (n = 1,407, aVE 20%, 95% CI −5% to 40%), but not in patients aged 75 years (n = 905, aVE 5%, 95% CI −37% to 35%). Why was this study done? • Streptococcus pneumoniae is the commonest bacterial cause of community-acquired pneumonia (CAP) worldwide with over 90 different serotypes. • Streptococcus pneumoniae is the commonest bacterial cause of community-acquired pneumonia (CAP) worldwide with over 90 different serotypes. • A 23-valent pneumococcal polysaccharide vaccine (PPV23) targeting 23 common sero- types is recommended for use in adults in various countries to protect against pneumo- coccal infection. • A 23-valent pneumococcal polysaccharide vaccine (PPV23) targeting 23 common sero- types is recommended for use in adults in various countries to protect against pneumo- coccal infection. • The long-term vaccine effectiveness (VE) of PPV23 against vaccine serotype pneumo- coccal CAP in adults in the setting of an established childhood pneumococcal vaccine programme is not known. Conclusions Competing interests: The authors of this manuscript have read the journal’s policy and have the following competing interests: WSL’s institution has received unrestricted investigator- initiated research funding from Pfizer for a multicentre cohort study in which WSL is the Chief Investigator. WSL is a member of the UK Joint Committee on Vaccination and Immunisation. NKF declares: The Public Health England - National Infection Service, Immunisation and Countermeasures Division provides vaccine manufacturers with post-marketing surveillance reports, which Marketing Authorisation Holders are required to submit to the UK Licensing authority in compliance with their Risk Management Strategy. A cost recovery charge is made for these reports. SDE is an employee of Public Health England’s National Infection Service in the Vaccine Preventable Bacteria Section (VPBS). The VPBS conduct contract research for pharmaceutical industries on behalf of Public Health England. No personal remuneration is received. The Public Health England National Infection Service Immunisation and Countermeasures Division has provided vaccine manufacturers with post- marketing surveillance reports, which Marketing Authorisation Holders are required to submit to the UK Licensing authority in compliance with their Risk Management Strategy. A cost recovery charge is made for these reports. No other conflicts of interest are declared. In the setting of an established national childhood PCV13 vaccination programme, PPV23 vaccination of clinical at-risk patient groups and adults aged 65 years provided moderate long-term protection against hospitalisation with PPV23 serotype pneumonia. These find- ings suggest that PPV23 vaccination may continue to have an important role in adult pneu- mococcal vaccine policy, including the possibility of revaccination of older adults. Methods and findings The aVE estimate in relation to PPV23/non-13-valent pneumococcal conjugate vaccine (PCV13) serotype pneu- monia (n = 417 cases, 43.7% vaccinated) was 29% (95% CI 6%–46%). Key limitations of this study are that, due to high vaccination rates, there was a lack of power to reject the null hypothesis of no vaccine effect, and that the study was not large enough to allow robust sub- group analysis in the older age groups. Introduction Streptococcus pneumoniae is widely accepted as the most common bacterial cause of commu- nity-acquired pneumonia (CAP) worldwide and is associated with substantial morbidity, mor- tality, and economic burden [1,2]. Two different types of pneumococcal vaccine are currently available: the 23-valent pneumococcal polysaccharide vaccine (PPV23) and pneumococcal conjugate vaccines (PCVs). In the UK, a national pneumococcal vaccination policy with 7-valent PCV was introduced for children under 2 years old in September 2006 and replaced with the 13-valent PCV in 2010 [3]. Subsequent reductions in invasive pneumococcal disease (IPD) and nasopharyngeal carriage due to vaccine serotypes in children were observed [4]. Reductions in vaccine type IPD and non-invasive pneumococcal pneumonia (NIPP) in adults followed, largely due to herd protection effects [4]. However, with the emergence of replace- ment serotypes in the UK, recent studies have observed increases in the incidence rates of IPD and pneumococcal pneumonia due to non-PCV13 serotypes [5,6]. Vaccination with PPV23, containing the PCV13 serotypes (except 6A) and 11 additional serotypes (2, 8, 9N, 10A, 11A, 12F, 15B, 17F, 20, 22F, and 33F) has been available in England to those 65 years and those in a clinical risk group since 2003, with coverage in those 65 years at 69.5% in March 2018 [7]. PPV23 vaccination has been found to be effective in preventing IPD and displays a waning effect with time from vaccination [8,9]. However, the effectiveness of PPV23 against pneumococcal pneumonia is controversial [10]. There are scant data regard- ing PPV23 serotype-specific vaccine effectiveness (VE) against NIPP in the setting of a well- established national infant pneumococcal vaccination programme. Such data are important to inform future adult vaccination policies [11]. The aim of this work was to evaluate the VE of PPV23 against vaccine-type pneumococcal pneumonia in adults hospitalised with CAP. Secondary aims were to (i) estimate VE in defined patient subgroups, (ii) estimate VE against pneumococcal serotypes not covered by herd pro- tection from PCV13 (PPV23/non-PCV13 pneumonia), and (iii) examine the effect of time since vaccination on VE. What do these findings mean? • PPV23 vaccination provides moderate long-term protection against hospitalisation with PPV23 serotype pneumonia. • PPV23 vaccination provides moderate long-term protection against hospitalisation with PPV23 serotype pneumonia. • PPV23 vaccination may continue to have an important role in national pneumococcal immunisation policies, including the possibility of revaccination of older adults. • PPV23 vaccination may continue to have an important role in national pneumococcal immunisation policies, including the possibility of revaccination of older adults. What did the researchers do and find? • We retrospectively analysed data from a cohort of adults hospitalised with CAP in Not- tingham, England, who had a diagnostic blood or urine test to determine (i) whether they had pneumococcal disease and (ii) if so, whether or not it was a serotype covered by the PPV23 vaccine. Abbreviations: aVE, adjusted VE; CAP, community- acquired pneumonia; COPD, chronic obstructive pulmonary disease; CPS, common polysaccharide; IPD, invasive pneumococcal disease; IQR, interquartile range; NIPP, non-invasive pneumococcal pneumonia; PCV, pneumococcal conjugate vaccine; PPV23, 23-valent pneumococcal polysaccharide vaccine; RCT, randomised controlled trials; REC, Research Ethics Committee; STROBE, Strengthening the Reporting of Observational Studies in Epidemiology; VE, vaccine effectiveness. • We calculated the VE of PPV23 in our cohort by calculating the odds of infection with vaccine-type pneumococcal pneumonia (cases) versus pneumonia of an alternate cause (controls) between vaccinated and unvaccinated individuals. • In our group of 2,357 patients (717 PPV23 cases, 1,640 controls) with an average time of 10 years since PPV23 vaccination, we estimated the VE of PPV23 against PPV23 2 / 17 PLOS Medicine | https://doi.org/10.1371/journal.pmed.1003326 October 23, 2020 PLOS MEDICINE Effectiveness of the PPV23 vaccine against vaccine serotype pneumococcal pneumonia serotype pneumonia to be 24% after adjustment for patient factors (95% CI 5%–40%, p = 0.02). Control group A patient with non-PPV23 vaccine serotype pneumococcal disease or nonpneumococcal pneumonia was defined as a control. This included Bio-plex24 negative cases (pneumonia of alternate aetiology), Bio-plex24 assay common polysaccharide (CPS)-antigen–only positive cases, and non-PPV23 vaccine-type S. pneumoniae cases. No matching of cases with controls was conducted. The control group remained the same for both primary and secondary analy- ses and was restricted as appropriate for subgroup analyses. Methods Study design This study is a secondary analysis of data collected from a prospective observational cohort study of consecutive adult patients with CAP admitted to 2 large university hospitals in PLOS Medicine | https://doi.org/10.1371/journal.pmed.1003326 October 23, 2020 3 / 17 PLOS MEDICINE Effectiveness of the PPV23 vaccine against vaccine serotype pneumococcal pneumonia Nottingham, UK, between September 2013 and August 2018. The primary study was designed to determine trends in pneumococcal serotypes in adults hospitalised with CAP over time; study details including epidemiological results arising over the first 10 years of study have been published previously [6,12]. Ethical approval for the primary study was provided by the Not- tingham Research Ethics Committee (REC reference 08/H0403/80). For this analysis, as with previous influenza and pneumococcal vaccine studies estimating VE in a real-world popula- tion, a nested case-control test-negative design was used [13,14]. The exposure of interest was PPV23 vaccination prior to the index admission, and the primary outcome was PPV23 vaccine serotype pneumococcal pneumonia. The study is reported as per the Strengthening the Reporting of Observational Studies in Epidemiology (STROBE) guideline (S1 Text). Study cohort Study eligibility criteria, recruitment, and microbiological processes have been described in full previously [6]. Briefly, patients aged 16 years presenting with one or more acute lower respiratory tract symptoms, evidence of acute infiltrates consistent with respiratory infection on admission chest radiograph, and treated for a diagnosis of CAP were eligible. Exclusion cri- teria included prior hospitalisation within 10 days of index admission, a diagnosis of tubercu- losis, or a diagnosis of post-obstructive pneumonia. Following informed consent, information on demographics and clinical characteristics (including potential confounders) were collected using a standardised proforma via researcher interview and medical records. For this analysis, only patients providing a sample subjected to pneumococcal serotype-specific testing were included. Pneumococcal serotype was identified using the following: (i) for bacteraemic cases: slide agglutination tests with latex antisera (ImmuLex Pneumotest kit, SSI Diagnostica, Hil- lerød, Denmark) or standard factor sera (SSI Diagnostica), or (from October 2017) whole genome sequencing; (ii) for NIPP cases: multiplex immunoassay (Bio-plex24) applied to urine samples to detect pneumococcal serotypes 1, 2, 3, 4, 5, 6A, 6B, 7F, 8, 9N, 9V, 10A, 11A, 12F, 14, 15B, 17F, 18C, 19A, 19F, 20, 22F, 23F, 33F and the pneumococcal cell-wall polysaccharide plus some cross-reactive serotypes [6,15,16]. Case groups The primary case group of interest was patients with pneumococcal pneumonia caused by PPV23 vaccine serotypes. The secondary case group comprised patients with PPV23/non- PCV13 serotype pneumonia (2, 8, 9N, 10A, 11A, 12F, 15B, 17F, 20, 22F, 33F); cases caused by PPV23/PCV13 serotypes were censored from analysis of the secondary group. Statistical analysis The case and control groups and vaccinated and unvaccinated individuals were compared using the appropriate summary statistic for the variable (proportions for binary variables, median and interquartile range [IQR] for non-normally distributed continuous variables). Odds ratios with 95% CIs and p-values for significance testing were calculated for binary vari- ables. Logistic regression and chi-squared tests for trend were used to test associations between ordered categorical exposure variables (severity category, baseline performance status as defined by the ECOG Performance Scale) [17] and binary outcomes. Patients with missing data on vaccine status were excluded from the primary analysis. To investigate reporting bias, sensitivity analysis was performed by including this group as either vaccinated or unvaccinated in turn. Adjusted odds ratios were derived using multivariable logistic regression models to describe the odds of case status between vaccinated and unvaccinated individuals; the outcome variable was case versus control. For the main analysis following modelling using Directed Acyclic Graphs (www.dagitty.net) [18], confounders included in the model a priori were age, sex, flu vaccination status in the past year, and clinical at-risk groups defined in accordance with Pub- lic Health England’s ‘Immunisation against Infectious Diseases’ (The Green Book) [3]. Influ- enza vaccination was included as an a priori confounder due to evidence that it is associated with PPV23 uptake and linked with health-seeking behaviours [19]. Smoking status was tested as an adjustment variable; it did not alter the results and so was not included. To account for change in serotype distribution over study years, year of index admission was tested as an adjustment variable; it did not alter the results and was not included in the final model. Likeli- hood ratio testing of continuous variables was performed to determine best fit (continuous versus grouped). VE estimates were calculated as (1 −odds ratio) × 100%. Subgroup analyses were performed with the whole cohort (cases and controls) restricted to those who were: (i) vaccine eligible under current UK pneumococcal vaccine policy, (ii) those 65 years old, and (iii) those 75 years old. A secondary analysis examining the effect of time since vaccination on VE including patients with confirmed vaccine status only was performed using a categorical variable with 5 levels for time interval between vaccination date and index admission (never vaccinated, vacci- nated 0–5 years, 5–10 years, 10–15 years, and 15 years prior to admission). Vaccine status At the time of hospital admission, patient self-reported pneumococcal vaccine status was recorded. Date of vaccination was confirmed from primary care records where available. In the primary analysis, patients were considered vaccinated if (i) vaccine status was confirmed via primary care records or (ii) they self-reported having had the vaccine. Details on influenza vaccination (a potential confounding variable) were also collected. A patient was considered vaccinated against influenza if they had received the influenza vaccine in the 12 months prior to index admission only (confirmed and self-reported). Sensitivity analysis of the primary out- come including only patients with vaccine status confirmed via primary care records was per- formed. Cases with vaccination less than 14 days prior to disease were excluded. Multiple serotypes identified Where multiple serotypes were identified in a single patient, these were excluded from the pri- mary analysis if the identified serotypes crossed the case-control definition. For analysis of the PLOS Medicine | https://doi.org/10.1371/journal.pmed.1003326 October 23, 2020 4 / 17 PLOS MEDICINE Effectiveness of the PPV23 vaccine against vaccine serotype pneumococcal pneumonia PPV23/non-PCV13 group, a case was included if one of the identified serotypes fulfilled the case definition and none of the identified serotypes fulfilled the definition of a control. PLOS Medicine | https://doi.org/10.1371/journal.pmed.1003326 October 23, 2020 Cohort description During the 5-year study period, of 2,447 eligible study participants, 54 were excluded as no vaccine status was available, leaving 2,393 patients. In this cohort of predominantly NIPP, pneumococcal serotype was detected by Bio-plex24 assay in 968 (40.5%) and by blood culture in 110 (4.6%) patients, respectively. In 36 patients, multiple serotypes crossing the case-control definition were detected, leaving 2,357 patients for the primary analysis. The most common serotypes detected were serotype 3 (n = 197), 8 (n = 192), 12F (n = 60), 15A (n = 54), and 5 (n = 41). Comparison of the vaccinated versus unvaccinated groups Of 2,357 patients, vaccine status was obtained from primary care records in 1,820 (77.2%) patients and was self-reported in 537 (32.8%). Mean time between vaccination and index admission was 10.3 (SD 5.8) and 10.4 (SD 5.2) years in the cases and controls, respectively. The shortest interval between vaccination and index admission was 47 days. Vaccinated patients were older (74.1 versus 57.4 years, p < 0.001) with a poorer baseline performance sta- tus (p-trend < 0.0001) and higher severity disease on admission (29.7% versus 15.5% high severity by CURB65 category; p-trend < 0.001) (S1 Table). They were more likely to have comorbid diseases except liver disease, alcohol dependence, and asthma. Prior vaccination with PCV13 in our cohort was very low at <0.5%. Statistical analysis A logistic regres- sion model was used to derive the odds of being a case in each vaccination category compared to those never vaccinated. A p-trend across the groups was calculated using the likelihood ratio test. To further investigate long-term decline in VE, a categorical variable for each PLOS Medicine | https://doi.org/10.1371/journal.pmed.1003326 October 23, 2020 5 / 17 PLOS MEDICINE Effectiveness of the PPV23 vaccine against vaccine serotype pneumococcal pneumonia individual year from vaccination to index admission (up to 24 years) and a cubic spline model were calculated with knots at 1, 4, and 8 years [9]. All analyses were performed using Stata 16 [20]. The study was conceived in 2017, and a prospective analysis plan was written by HL, TM, and WSL in March 2019 (S2 Text). Following peer review, a serotype-specific VE analysis and an analysis of all PPV23 cases excluding serotype 5 were performed. Comparison between cases of PPV23 serotype pneumonia and controls There were 717 cases of PPV23 serotype pneumonia (48% vaccinated) and 1,640 controls (54.5% vaccinated). Compared to controls, cases were of a similar age (66.5 versus 65.4 years, p = 0.18) but were less likely to be male (47.6% versus 56.9%, p < 0.0001) (Table 1). Cases had a better baseline performance status (p-trend = 0.01), had higher severity disease on admission (26.2% versus 21.5% high severity by CURB65; p-trend = 0.01), were less likely to have malig- nancy or cardiac disease, but were more likely to be alcohol dependent. Primary analysis: VE against PPV23 serotypes In the primary analysis of all cases of PPV23 serotype disease, the crude VE estimate was 23% (95% CI 8%–35%) (Table 2). Following adjustment for age, sex, flu vaccination status, and clin- ical risk factors, estimated VE was 24% (95% CI 5%–40%, p = 0.02). Full model parameters are available in S2 Table. Adjusted estimates of VE (aVE) were similar in patient subgroups restricted by (i) vaccine eligibility (n = 1,768, aVE 23%, 95% CI 1%–40%, p = 0.04) and (ii) age  65 years (n = 1,407, aVE 20%, 95% CI −5% to 40%, p = 0.11). In patients aged 75 years (n = 905), aVE was only 5% (95% CI −37% to 35%, p = 0.77). The mean times from vaccination to index admission with CAP for these patient subgroups were 10.4 (SD 5.4) years, 10.8 (SD 5.3) years, and 11.8 (SD 4.8) years, correspondingly. PLOS Medicine | https://doi.org/10.1371/journal.pmed.1003326 October 23, 2020 6 / 17 Effectiveness of the PPV23 vaccine against vaccine serotype pneumococcal pneumonia PLOS MEDICINE Table 1. Characteristics of cases and control groups for the primary analysis. Primary analysis: VE against PPV23 serotypes Controls N (%) Case PPV23 Disease N (%) Odds Ratio (95% CI) p-Value Number 1,640 717 Mean Age (SD) 66.5 (18.3) 65.4 (18.7) 1.00 (0.99–1.00) 0.18 Sex, Male 932 (56.9) 341 (47.6) 0.69 (0.58–0.82) <0.001 Residential Care 57 (3.5) 24 (3.4) 0.96 (0.59–1.56) 0.88 Baseline Performance Status 0 522 (31.8) 285 (39.8) 1 1 587 (35.8) 229 (31.9) 0.71 (0.58–0.88) 2 291 (17.7) 123 (17.1) 0.77 (0.60–1.00) 3 81 (4.9) 31 (4.3) 0.70 (0.45–1.09) 4 55 (3.4) 16 (2.2) 0.53 (0.30–0.95) 0.009 Missing 104 (6.3) 33 (4.6) Severity by CURB65 Score Low 820 (50.0) 313 (43.7) 1 Moderate 467 (28.5) 216 (30.1) 1.21 (0.98–1.49) Severe 353 (21.5) 188 (26.2) 1.40 (1.12–1.74) 0.009 Comorbidity Malignancy 168 (10.3) 52 (7.3) 0.68 (0.49–0.95) 0.02 Liver disease 31 (1.9) 19 (2.7) 1.41 (0.79–2.52) 0.24 Cardiac failure 112 (6.8) 33 (4.6) 0.66 (0.44–0.98) 0.04 Cerebrovascular disease 127 (7.7) 52 (7.3) 0.93 (0.67–1.30) 0.68 Renal disease 157 (9.6) 67 (9.3) 0.97 (0.72–1.32) 0.86 Diabetes 266 (16.2) 110 (15.3) 0.94 (0.73–1.19) 0.59 IHD 188 (11.5) 63 (8.8) 0.74 (0.55–1.00) 0.05 Cognitive impairment 55 (3.4) 26 (3.6) 1.08 (0.67–1.74) 0.74 Asthma 163 (9.9) 84 (11.7) 1.20 (0.91–1.59) 0.19 COPD 393 (24.0) 169 (23.6) 0.98 (0.80–1.20) 0.84 Chronic heart disease 277 (16.9) 86 (12.0) 0.67 (0.52–0.87) 0.003 Chronic lung disease 446 (27.2) 192 (26.8) 0.98 (0.80–1.19) 0.83 Hypertension 389 (23.7) 182 (25.4) 1.09 (0.89–1.34) 0.39 Alcohol 34 (2.1) 26 (3.6) 1.78 (1.06–2.99) 0.03 Immunosuppression 75 (4.6) 33 (4.6) 1.01 (0.66–1.53) 0.98 Table 1. Characteristics of cases and control groups for the primary analysis. p-Trend derived from chi-squared test for trend. Secondary analysis: PPV23/non-PCV13 cases and serotype specific aAdjusted for age, sex, receipt of seasonal flu vaccination, and presence or absence of the following risk factors: malignancy, cardiac failure, cerebrovascular disease, chronic renal disease, chronic liver disease, diabetes, ischaemic heart disease, COPD, other chronic cardiac disease, other chronic lung disease, hypertension, alcohol dependence, and immunosuppression. bAdjusted for age, sex, receipt of seasonal flu vaccination. cAdjusted for age group over 65, sex, receipt of seasonal flu vaccination, and presence or absence of a clinical risk factor. ed for sex, receipt of seasonal flu vaccination, and presence or absence of a clinical risk factor only. Unadjusted and adjusted results of the primary analysis, subgroup analysis, and the secondary case group analysis in cases against controls. The baseline group for all analysis is the respective control group. Vaccine exposure confirmed and self-reported yes at any point prior to their index admission. p-Values in bold are <0.05. Abbreviations: aVE, adjusted VE; COPD, chronic obstructive pulmonary disease; PCV, pneumococcal conjugate vaccine; PPV23, 23-valent pneumococcal polysaccharide vaccine; VE, vaccine effectiveness serotypes 19A and 9N, while a negative aVE was observed for serotypes 5 (aVE −144%, 95% CI −503% to 1%, p = 0.05) and 11A (aVE −110%, 95% CI −415% to 14%, p = 0.1). serotypes 19A and 9N, while a negative aVE was observed for serotypes 5 (aVE −144%, 95% CI −503% to 1%, p = 0.05) and 11A (aVE −110%, 95% CI −415% to 14%, p = 0.1). Secondary analysis: PPV23/non-PCV13 cases and serotype specific In the secondary analysis of PPV23/non-PCV13 serotype disease (n = 417, 43.7% vaccinated), the aVE was 29% (95% CI 6%–46%, p = 0.02) (Table 2). Similar estimates were observed in the vaccine-eligible (aVE 26%, 95% CI 0%–46%, p = 0.05) and 65-year-old (aVE 24%, 95% CI −7% to 47%, p = 0.12) subgroups. No vaccine effect was observed in the 75-year-old sub- group (aVE −2%, 95% CI −65% to 37%, p = 0.93). Serotype-specific aVE estimates varied by serotype. The highest estimates were seen in serotypes 3 (aVE 40%, 95% CI 14%–59%, p = 0.01), 12F (aVE 39%, 95% CI −20% to 69%, p = 0.15), 19F (aVE 38%, 95% CI −60% to 76%, p = 0.32), and 8 (aVE 34%, 95% CI 1%–55%, p = 0.04) (S3 Table). No vaccine effect was seen for PLOS Medicine | https://doi.org/10.1371/journal.pmed.1003326 October 23, 2020 PLOS Medicine | https://doi.org/10.1371/journal.pmed.1003326 October 23, 2020 7 / 17 PLOS MEDICINE Effectiveness of the PPV23 vaccine against vaccine serotype pneumococcal pneumonia Table 2. Unadjusted VE and aVE estimates. Cases N (%) Controls N (%) Unadjusted VE % (95% CI) aVE % (95% CI) p-Value Adjusted Analysis Primary Analysis: All PPV23 Serotypes Whole Cohort Number 717 1,640 Not vaccinated 373 (52.0) 746 (45.5) Vaccinated 344 (48.0) 894 (54.5) 23 (8 to 35) 24 (5 to 40)a 0.02 Subgroup: Vaccine Eligible Number 503 1,265 Not vaccinated 189 (37.6) 416 (32.9) Vaccinated 314 (62.4) 849 (67.1) 19 (−1 to 34) 23 (1 to 40)b 0.04 Subgroup: 65 Years Number 414 993 Not vaccinated 133 (32.1) 267 (26.9) Vaccinated 281 (67.9) 726 (73.1) 22 (0 to 39) 20 (−5 to 40)c 0.11 Subgroup: 75 Years Number 246 659 Not vaccinated 65 (26.4) 168 (25.5) Vaccinated 181 (73.6) 491 (74.5) 5 (−33 to 32) 5 (−37 to 35)d 0.77 Secondary Analysis PPV23/non-PCV13 Serotypes (Whole Cohort) Number 417 1,640 Not vaccinated 235 (56.4) 746 (45.5) Vaccinated 182 (43.7) 894 (54.5) 35 (20 to 48) 29 (6 to 46)a 0.02 aAdjusted for age, sex, receipt of seasonal flu vaccination, and presence or absence of the following risk factors: malignancy, cardiac failure, cerebrovascular disease, chronic renal disease, chronic liver disease, diabetes, ischaemic heart disease, COPD, other chronic cardiac disease, other chronic lung disease, hypertension, alcohol dependence, and immunosuppression. bAdj d f i f l fl i i Table 2. Unadjusted VE and aVE estimates. Sensitivity analysis: Vaccine-confirmed cases Patients with vaccine status confirmed through primary health records were older (67.9 versus 62.3 years) and more likely to have comorbid disease with higher severity disease on admission (24.2% versus 18.8% high severity disease) (S4 Table). A higher proportion were vaccinated with PPV23 (59.6% versus 28.7%). Sensitivity analysis of those with confirmed vaccine status produced slightly lower aVE estimates for all PPV23 cases (aVE 19%, 95% CI −5% to 37%, p = 0.12) and PPV23/non-PCV13 cases (aVE 21%, 95% CI −10% to 43%, p = 0.16) with confidence intervals crossing zero in both instances. There was no change in the primary outcome follow- ing sensitivity analysis of those missing both confirmed and self-reported vaccine status (n = 54). PLOS Medicine | https://doi.org/10.1371/journal.pmed.1003326 October 23, 2020 8 / 17 PLOS MEDICINE Effectiveness of the PPV23 vaccine against vaccine serotype pneumococcal pneumonia Time from vaccination Data on date of vaccination were available for 535 (74.6%) cases of PPV23 serotype disease and 1,285 (78.3%) controls. The p-trend across time groups was 0.39, suggesting no association between time since vaccination and being a case (Table 3). For PPV23/non-PCV13 serotype disease, an association was observed (p-trend = 0.04); the highest aVE seen in those vaccinated within 5 years (aVE 46%) declining to 5% in those vaccinated 15 years prior (Table 3). A cubic spline model demonstrating change in VE with time since vaccination is shown in Fig 1. For PPV23 serotype disease, an inverted-U shape was observed suggesting a negative VE in those most recently vaccinated (Fig 1A). A post hoc descriptive analysis of cases vaccinated 0–5 years prior to admission found that the most commonly identified serotype was serotype 5 (n = 23, 34.6%) equating to 75.8% (23/33) of all serotype 5 cases. When serotype 5 cases were excluded from the PPV23 serotype case group, the inverted-U shape was not observed (Fig 1C). Discussion The key study findings are that PPV23 vaccination provides moderate long-term protection in vaccinated individuals against hospitalisation with PPV23 serotype pneumonia (aVE 24%), with similar levels of protection evident for patient subgroups restricted to those who are vac- cine eligible according to UK immunisation policy recommendations (aVE 23%) and patients aged 65 years (aVE 20%) but not for patients aged 75 years (aVE 5%). We also found pro- tection against hospitalisation with PPV23/non-PCV13 serotype pneumonia to be similar (aVE 29%). To our knowledge, only 2 other studies have previously reported on the serotype-specific effectiveness of PPV23 against pneumococcal pneumonia. Slightly higher VE estimates were Table 3. Time from vaccination analysis. Number Adjusted Odds Ratio p-Trend % aVE (95% CI) PPV23 Serotypes Never 736 1 0 >15 years 228 0.9 (0.62 to 1.3) 10 (−30 to 38) 10–15 years 360 0.71 (0.51 to 0.99) 29 (1 to 49) 5–10 years 293 0.7 (0.49 to 0.98) 30 (2 to 51) 0–5 years 203 1.07 (0.74 to 1.54) 0.39 −7 (−54 to 26) PPV23/non-PCV13 Serotypes Only Never 641 1 0 >15 years 196 0.95 (0.59 to 1.52) 5 (−52 to 41) 10–15 years 324 0.85 (0.56 to 1.29) 15 (−29 to 44) 5–10 years 264 0.81 (0.53 to 1.24) 19 (−24 to 47) 0–5 years 155 0.54 (0.31 to 0.95) 0.04 46 (5 to 69) Table 3. Time from vaccination analysis. Adjusted odds ratios for case status between vaccinated and unvaccinated individuals in each time from vaccination group, compared to the baseline never vaccinated group. The p-trend across groups is presented. All estimates are adjusted for age, sex, receipt of seasonal flu vaccination, and presence or absence of the following risk factors: malignancy, cardiac failure, cerebrovascular disease, chronic renal disease, chronic liver disease, diabetes, ischaemic heart disease, COPD, other chronic cardiac disease, other chronic lung disease, hypertension, alcohol dependence, and immunosuppression. VE estimates are calculated as (1 –adjusted odds ratio) × 100. Abbreviations: aVE, adjusted VE; COPD, chronic obstructive pulmonary disease; PCV, pneumococcal conjugate vaccine; PPV23, 23-valent pneumococcal polysaccharide vaccine; VE, vaccine effectiveness Adjusted odds ratios for case status between vaccinated and unvaccinated individuals in each time from vaccination group, compared to the baseline never vaccinated group. The p-trend across groups is presented. https://doi.org/10.1371/journal.pmed.1003326.t003 Discussion Our estimates therefore represent long- PLOS Medicine | https://doi.org/10.1371/journal.pmed.1003326 October 23, 2020 10 / 17 PLOS MEDICINE Effectiveness of the PPV23 vaccine against vaccine serotype pneumococcal pneumonia term VE estimates. Secondly, our study took place in the setting of established PCV13 use within a strong national childhood vaccination program and resultant herd protection against these serotypes. In contrast, PCV13 replaced PCV7 in the Japanese childhood vaccination pro- gram only in the last 6 months of the study by Suzuki and colleagues. A matched case-control study by Kim and colleagues of patients 65 years of age in the Republic of Korea found similar aVE estimates to ours in those aged 65–75 (aVE 21.0%) but no effect in those 75 years (aVE −35%) [21]. Of note, the median interval from vaccination to disease was short at 15 months, representing peak VE, and therefore their estimates are lower than might be expected. Both Suzuki and colleagues and Kim and colleagues relied on culture-based techniques of pneumococcal isolates to identify serotype [14,21]. As only a minority of patients with pneumococcal infection usually have positive respiratory and/or blood cultures, those studies represent a selected patient group [22]. Our VE estimates are lower than those reported for PPV23 vaccination against IPD. In a Cochrane review by Moberley and colleagues, the pooled odds of vaccination in cases of IPD was 0.26 (n = 11 randomised controlled trials [RCTs], 95% CI 0.14–0.45) and in vaccine-type IPD was 0.18 (n = 5 RCTs, 95% CI 0.1%–0.31%), equating to VE estimates of 74% and 82%, respectively [8]. As included clinical trials had shorter follow-up periods (2–3 years) compared to the mean time since vaccination observed in our study (10.4 years), their estimates likely represent maximal VE post-vaccination. In addition, Moberley and colleagues included older studies (pre-1970) that predominantly included cohorts of young, healthy individuals for whom the effect of immunosenescence is less important and consequently where VE estimates may be expected to be higher. Subgroup analysis by Moberley and colleagues of patients with known chronic disease from high-income countries found no protective effect, suggesting dif- ferential VE depending on underlying disease within IPD [8]. Discussion All estimates are adjusted for age, sex, receipt of seasonal flu vaccination, and presence or absence of the following risk factors: malignancy, cardiac failure, cerebrovascular disease, chronic renal disease, chronic liver disease, diabetes, ischaemic heart disease, COPD, other chronic cardiac disease, other chronic lung disease, hypertension, alcohol dependence, and immunosuppression. VE estimates are calculated as (1 –adjusted odds ratio) × 100. Abbreviations: aVE, adjusted VE; COPD, chronic obstructive pulmonary disease; PCV, pneumococcal conjugate vaccine; PPV23, 23-valent pneumococcal polysaccharide vaccine; VE, vaccine effectiveness https://doi.org/10.1371/journal.pmed.1003326.t003 9 / 17 PLOS Medicine | https://doi.org/10.1371/journal.pmed.1003326 October 23, 2020 PLOS MEDICINE Effectiveness of the PPV23 vaccine against vaccine serotype pneumococcal pneumonia reported b Suzuki and colleagues in their stud of PPV23 effecti eness in adults o er the age Fig 1. VE against time since vaccination using the spline model. VE by time since vaccination (in years) using the cubic spline model for the following case groups: (A) all PPV23 serotype disease, (B) PPV23/nonPCV13 serotype disease, and (C) all PPV23 serotype disease excluding serotype 5. Individual estimates for each year are shown but are based on small participant numbers within each year. PCV, pneumococcal conjugate vaccine; PPV23, 23-valent pneumococcal polysaccharide vaccine; VE, vaccine effectiveness. https://doi.org/10.1371/journal.pmed.1003326.g001 Fig 1. VE against time since vaccination using the spline model. VE by time since vaccination (in years) using the cubic spline model for the following case groups: (A) all PPV23 serotype disease, (B) PPV23/nonPCV13 serotype disease, and (C) all PPV23 serotype disease excluding serotype 5. Individual estimates for each year are shown but are based on small participant numbers within each year. PCV, pneumococcal conjugate vaccine; PPV23, 23-valent pneumococcal polysaccharide vaccine; VE, vaccine effectiveness. https://doi.org/10.1371/journal.pmed.1003326.g001 https://doi.org/10.1371/journal.pmed.1003326.g001 https://doi.org/10.1371/journal.pmed.1003326.g001 reported by Suzuki and colleagues in their study of PPV23 effectiveness in adults over the age of 65 in Japan [14]. Using a similar test-negative design, they estimated PPV23 VE to be 33.5% (95% CI 5.6%–53.1%) against PPV23 serotypes and 27.4% (95% CI 3.2%–45.6%) against all pneumococcal pneumonia. There are differences that may account for our lower VE estimate. Firstly, our primary analysis included all vaccinated patients regardless of time of vaccination, whereas Suzuki and colleagues only considered a patient vaccinated if they had received the vaccine within 5 years prior to their index admission. PLOS Medicine | https://doi.org/10.1371/journal.pmed.1003326 October 23, 2020 Discussion Using more recent UK data, Djennad and colleagues estimated VE of PPV23 against vaccine-type IPD in patients 65 years to be only slightly higher than those observed in our study of predominantly NIPP (IPD aVE 27%, 95% CI 17%–35%, bacteraemic pneumonia aVE 29%, 95% CI 17%–40%) [9]. Over- all, it remains likely that PPV23 VE is greater against IPD than NIPP, but the size of difference may not be as large as previously estimated. In our cohort of predominantly NIPP, we found the aVE for serotype 3 was 40% (95% CI 14%–59%). This is similar to VE estimates by Suzuki and colleagues (41.2%, 95% CI −10.8% to 68.8%) [14]. These results suggest that moderate direct protection is afforded by PPV23 against serotype 3 NIPP. Similar direct effects against serotype 3 NIPP in adults have been observed following PCV13 vaccination [23]. In contrast, in relation to adult IPD, Djennad and col- leagues found no vaccine effect of PPV23 against serotype 3 [9]. Taken together, these results suggest that VE of PPV23 against serotype 3 may vary according to type of pneumococcal disease. PPV23 induces an immune response via B cells in a time- and dose-dependent manner; due to its T-cell–independent mechanism, it is not expected to provide lifelong immunity via immunological memory [24]. The duration of protection afforded by the PPV23 vaccine is estimated at between 3 and 10 years [25,26]. Djennad and colleagues reported a decrease in VE estimates against PPV23 serotype disease 5 years since vaccination in their IPD cohort (0–2 years VE 41%; 5 years VE 23%) [9]. Our time interval analyses suggest a loss of protection in those vaccinated 10 to 15 years previously. This represents a longer durability of protection than might be expected from immunogenicity studies alone. However, our time-dependent estimates lack precision due to sample size limitations and may be affected by survival bias in those furthest from vaccination. VE of PPV23 is known to differ by serotype within IPD [9]. In a post hoc analysis, we observed that serotype 5 was responsible for the largest proportion (34.3%) of cases of PPV23 PLOS Medicine | https://doi.org/10.1371/journal.pmed.1003326 October 23, 2020 11 / 17 PLOS MEDICINE Effectiveness of the PPV23 vaccine against vaccine serotype pneumococcal pneumonia serotype pneumonia within 0–5 years of vaccination. Discussion Since the introduction of PCV vaccines, serotype 5 has become an uncommon cause of IPD though it continues to be associated with cases of NIPP both in the UK and the US [6,27,28]. Prior to the introduction of PCV vaccines, it was considered a low-carriage, high-virulence serotype that could occur in disease outbreaks [29,30]. In our study, cases of serotype 5 pneumonia were spread evenly across the 5 years of the study, and we found no evidence for temporal clustering. Pimenta and colleagues recently reported other Streptococcal strains (S. infantis, S. mitis, and S. oralis) expressing serotype 5 capsule [31]. These pathogens commonly colonise the nasopharynx and mouth although they are not normally associated with a clinical diagnosis of CAP. The Bio-plex24 assay is highly sensitive [15]. It is therefore possible that there is a nonpneumococcal provenance for the detected serotype 5 antigen in our cases. However, such cross-reactivity would not in itself explain the differential effect in vaccinated and unvaccinated patients. We are not aware of any previous data, nor mechanism, to suggest that PPV23 vaccination might increase the risk of serotype 5 pneumonia and are currently unable to explain why 75% of cases of serotype 5 pneumonia occurred within 5 years of PPV23 vaccination in our study cohort. Accepting the possibility of a serotype 5 outbreak disproportionately affecting vaccinated individuals would mean that our estimates of PPV23 VE are conservative. Our observations around serotype 5 warrant further study, including confirmation in a separate cohort of patients. PLOS Medicine | https://doi.org/10.1371/journal.pmed.1003326 October 23, 2020 Supporting information S1 Text. STROBE checklist. STROBE, Strengthening the Reporting of Observational Studies in Epidemiology. (DOC) Conclusions In the setting of an established national childhood PCV13 vaccination programme, PPV23 vaccination in clinical at-risk patient groups and adults 65 years of age appears moderately effective against hospitalisation with PPV23 serotype pneumococcal pneumonia. Implications This study suggests that single-dose adult PPV23 vaccination in the setting of an established childhood PCV13 vaccination programme provides moderate VE against hospitalisation with PPV23 serotype pneumonia and that the current UK adult pneumococcal vaccine policy appropriately identifies clinical at-risk patient groups who benefit from PPV23 vaccination. However, there is a suggestion, consistent with data from other studies, that protection more than 15 years after vaccination is low. In many countries, the vast majority of adults who receive PPV23 vaccination do so at, or before, the age of 65 years, while the median age of adults hospitalised with CAP is around 75 years [36]. This raises questions regarding the tim- ing of adult pneumococcal vaccination and the role and value of revaccination in the context of an ageing population [37,38]. Repeat vaccination with PPV23 has been found to safely pro- duce immunogenic antibody responses with limited evidence of immune hypo-responsiveness following an interval of 5 years or more; however, studies in high-risk populations have not been able to show VE against IPD following revaccination [39,40]. Newer multivalent PCV vaccines are coming to market and may provide alternative options to consider. Strengths and limitations The main strengths of this study are (i) the use of a serotype-specific multiplex urine assay allowing analysis of VE in both IPD and NIPP across all serotypes included within the PPV23 vaccine, (ii) analysis based on a large cohort of consecutively consented patients without knowledge of the causative serotype at the time of recruitment, thereby minimising selection bias, and (iii) findings set in the background of a strong national PCV13 childhood vaccination programme providing well-established adult herd protection effects. Vaccine status, including date of vaccine, was confirmed through primary care records in a high pro- portion of patients, thus minimising the effect of recall and misclassification bias. The accu- racy of those with self-reported and confirmed vaccine status was 82.7% for those who self- reported as ‘vaccinated’ and 56.1% for those who self-reported as ‘not vaccinated’; the direc- tion of bias when including self-reported vaccine status is therefore towards a more conser- vative VE estimate [32]. The study is subject to the inherent biases common to case-control studies; however, the main limitation is lack of power. Due to relatively high vaccination rates in both case and con- trol groups, our analysis is underpowered to reject the null hypothesis (that there is no vaccine effect observed); 2,100 patients would be required in each outcome group for 80% power at a significance level of 0.05 for a VE of 22%, estimated on the vaccine exposure within the whole cohort. The statistically significant results observed therefore are likely to represent true find- ings. However, the study sample was not large enough to enable robust subgroup analyses of VE by age groups above 65 years. Secondly, of those identified as eligible for the cohort study on which this analysis was conducted, patients in whom study consent was not obtained were older (median age 82.2 years) with more comorbid disease [6]. Therefore, VE estimates pre- sented here may be less applicable to persons aged above 80 years [33]. Due to the retrospective nature of the study, adjusting by time since vaccination is not possible in the unvaccinated cohort. Our case group were more likely to be female. Close contact with children has previ- ously been found to be associated with an increased risk of pneumococcal disease [34,35]. The observed female predominance in cases may reflect sex differences in level of close contact with children. Strengths and limitations PLOS Medicine | https://doi.org/10.1371/journal.pmed.1003326 October 23, 2020 12 / 17 PLOS MEDICINE Effectiveness of the PPV23 vaccine against vaccine serotype pneumococcal pneumonia S2 Text. Prospective statistical analysis plan—March 2019. (DOCX) S1 Table. Characteristics of the unvaccinated and vaccinated patient cohorts. Unadjusted odds ratios with 95% CIs are presented with p-values. The baseline group for all analysis is the unvaccinated cohort. p-Trend derived from chi-squared test for trend. (DOCX) S2 Table. Estimated model parameters for the primary analysis model. Odds ratios, 95% CIs, and p-values are displayed. (DOCX) Author Contributions Conceptualization: Hannah Lawrence, Tricia M. McKeever, Wei Shen Lim. Data curation: Hannah Lawrence, Harry Pick. Formal analysis: Hannah Lawrence, Caroline Trotter, Tricia M. McKeever. Investigation: Hannah Lawrence, Harry Pick, Vadsala Baskaran, Priya Daniel, Chamira Rodrigo, Deborah Ashton, Rochelle C. Edwards-Pritchard, Carmen Sheppard, Seyi D. Eletu, David Litt, Norman K. Fry, Samuel Rose. Methodology: Hannah Lawrence, Caroline Trotter, Tricia M. McKeever, Wei Shen Lim. Project administration: Hannah Lawrence, Wei Shen Lim. Project administration: Hannah Lawrence, Wei Shen Lim. Resources: Seyi D. Eletu. Resources: Seyi D. Eletu. Resources: Seyi D. Eletu. Supervision: Wei Shen Lim. Supervision: Wei Shen Lim. Supervision: Wei Shen Lim. Validation: Rochelle C. Edwards-Pritchard, Carmen Sheppard, Seyi D. Eletu. Writing – original draft: Hannah Lawrence, Tricia M. McKeever, Wei Shen Lim. Writing – review & editing: Hannah Lawrence, Harry Pick, Vadsala Baskaran, Priya Daniel, Carmen Sheppard, Seyi D. Eletu, David Litt, Norman K. Fry, Caroline Trotter, Tricia M. McKeever, Wei Shen Lim. S2 Table. Estimated model parameters for the primary analysis model. Odds ratios, 95% CIs, and p-values are displayed. (DOCX) S3 Table. Unadjusted and adjusted results of the serotype-specific analysis. The baseline group for all analysis is the respective control group. Vaccine exposure confirmed and self- reported yes at any point prior to their index admission. Results are adjusted for age, sex, receipt of seasonal flu vaccination, and presence or absence of a clinical risk factor only. (DOCX) S4 Table. Characteristics of patients in whom the vaccine status was confirmed via primary care compared to those with self-reports only. p-Trend derived from chi-squared test for trend. (DOCX) S5 Table. Subanalysis of the cohort restricted to 60- to 75-year-olds with no known risk factors. Unadjusted and adjusted results of the primary analysis and the secondary case group S5 Table. Subanalysis of the cohort restricted to 60- to 75-year-olds with no known risk factors. Unadjusted and adjusted results of the primary analysis and the secondary case group PLOS Medicine | https://doi.org/10.1371/journal.pmed.1003326 October 23, 2020 13 / 17 PLOS MEDICINE Effectiveness of the PPV23 vaccine against vaccine serotype pneumococcal pneumonia analysis in cases against controls. The baseline group for all analysis is the respective control group. Vaccine exposure confirmed and self-reported yes at any point prior to their index admission. Adjusted for sex only. (DOCX) S6 Table. Subanalysis excluding serotype 5 from the primary analysis group (all PPV23 serotypes). Adjusted for age, sex, receipt of seasonal flu vaccination, and presence or absence of the following risk factors: malignancy, cardiac failure, cerebrovascular disease, chronic renal disease, chronic liver disease, diabetes, ischaemic heart disease, COPD, other chronic cardiac disease, other chronic lung disease, hypertension, alcohol dependence, and immunosuppres- sion. ^Adjusted for age, sex, receipt of seasonal flu vaccination. COPD, chronic obstructive pulmonary disease; PPV23, 23-valent pneumococcal polysaccharide vaccine. (DOCX) Acknowledgments The authors would like to thank Nick Andrews, Senior Statistician at Public Health England, for his support with statistics; the Nottingham Pneumonia Patient and Public Involvement group for their ongoing input in respiratory infection research; and all participants who gave their consent for the primary study. References 1. Said MA, Johnson HL, Nonyane BA, Deloria-Knoll M, O’Brien KL, Andreo F, et al. Estimating the burden of pneumococcal pneumonia among adults: a systematic review and meta-analysis of diagnostic tech- niques. PLoS ONE. 2013; 8(4):e60273. Epub 2013/04/09. https://doi.org/10.1371/journal.pone. 0060273 PMID: 23565216; PubMed Central PMCID: PMC3615022. PLOS Medicine | https://doi.org/10.1371/journal.pmed.1003326 October 23, 2020 14 / 17 PLOS MEDICINE Effectiveness of the PPV23 vaccine against vaccine serotype pneumococcal pneumonia 2. Welte T, Torres A, Nathwani D. Clinical and economic burden of community-acquired pneumonia among adults in Europe. Thorax. 2012; 67(1):71–9. Epub 2010/08/24. https://doi.org/10.1136/thx.2009. 129502 PMID: 20729232. 3. Public Health England P. Immunisation against infectious disease—The Green Book. Chapter 25: Pneumococcal 2018 [cited 2019 Dec 1]. Available from: https://assets.publishing.service.gov.uk/ government/uploads/system/uploads/attachment_data/file/674074/GB_Chapter_25_Pneumococcal_ V7_0.pdf. 4. Kandasamy R, Voysey M, Collins S, Berbers G, Robinson H, Noel I, et al. Persistent Circulation of Vac- cine Serotypes and Serotype Replacement After 5 Years of Infant Immunization With 13-Valent Pneu- mococcal Conjugate Vaccine in the United Kingdom. The Journal of infectious diseases. 2019. https:// doi.org/10.1093/infdis/jiz178 PMID: 31004136 5. Ladhani SN, Collins S, Djennad A, Sheppard CL, Borrow R, Fry NK, et al. Rapid increase in non-vaccine serotypes causing invasive pneumococcal disease in England and Wales, 2000–17: a prospective national observational cohort study. The Lancet Infectious diseases. 2018; 18(4):441–51. Epub 2018/ 02/06. https://doi.org/10.1016/S1473-3099(18)30052-5 PMID: 29395999. 6. Pick H, Daniel P, Rodrigo C, Bewick T, Ashton D, Lawrence H, et al. Pneumococcal serotype trends, surveillance and risk factors in UK adult pneumonia, 2013–18. Thorax. 2019. Epub 2019/10/09. https:// doi.org/10.1136/thoraxjnl-2019-213725 PMID: 31594801. 7. Public Health England P. Pneumococcal Polysacchardie Vaccine (PPV) coverage report, England, April 2017 to March 2018. 2018 27 July 2018. Report No.: Number 27. 8. Moberley S, Holden J, Tatham DP, Andrews RM. Vaccines for preventing pneumococcal infection in adults. The Cochrane database of systematic reviews. 2013;(1):Cd000422. Epub 2013/02/27. https:// doi.org/10.1002/14651858.CD000422.pub3 PMID: 23440780. 9. Djennad A, Ramsay ME, Pebody R, Fry NK, Sheppard C, Ladhani SN, et al. Effectiveness of 23-Valent Polysaccharide Pneumococcal Vaccine and Changes in Invasive Pneumococcal Disease Incidence from 2000 to 2017 in Those Aged 65 and Over in England and Wales. EClinicalMedicine. 2018; 6:42– 50. Epub 2019/06/14. https://doi.org/10.1016/j.eclinm.2018.12.007 PMID: 31193709; PubMed Central PMCID: PMC6537583. 10. Huss A, Scott P, Stuck AE, Trotter C, Egger M. Efficacy of pneumococcal vaccination in adults: a meta- analysis. Cmaj. 2009; 180(1):48–58. Epub 2009/01/07. https://doi.org/10.1503/cmaj.080734 PMID: 19124790; PubMed Central PMCID: PMC2612051. 11. PLOS Medicine | https://doi.org/10.1371/journal.pmed.1003326 October 23, 2020 References Epub 2010/08/09. https://doi.org/10.1017/S0950268810001846 PMID: 20696084 20. StataCorp. Stata Statistical Software: Release 16. College Station, TX: StataCorp LLC. 2019. 21. Kim JH, Chun BC, Song JY, Kim HY, Bae IG, Kim DM, et al. Direct effectiveness of pneumococcal poly- saccharide vaccine against invasive pneumococcal disease and non-bacteremic pneumococcal pneu- monia in elderly population in the era of pneumococcal conjugate vaccine: A case-control study. Vaccine. 2019; 37(21):2797–804. Epub 2019/04/22. https://doi.org/10.1016/j.vaccine.2019.04.017 PMID: 31005428. 22. Haessler S, Lindenauer PK, Zilberberg MD, Imrey PB, Yu PC, Higgins T, et al. Blood cultures versus respiratory cultures: Two different views of pneumonia. Clinical infectious diseases: an official publica- tion of the Infectious Diseases Society of America. 2019. Epub 2019/10/31. https://doi.org/10.1093/cid/ ciz1049 PMID: 31665249. 23. McLaughlin JM, Jiang Q, Gessner BD, Swerdlow DL, Sings HL, Isturiz RE, et al. Pneumococcal conju- gate vaccine against serotype 3 pneumococcal pneumonia in adults: A systematic review and pooled analysis. Vaccine. 2019; 37(43):6310–6. Epub 2019/09/17. https://doi.org/10.1016/j.vaccine.2019.08. 059 PMID: 31522807. 24. Vadlamudi NK, Parhar K, Altre Malana KL, Kang A, Marra F. Immunogenicity and safety of the 13-valent pneumococcal conjugate vaccine compared to 23-valent pneumococcal polysaccharide in immuno- competent adults: A systematic review and meta-analysis. Vaccine. 2019; 37(8):1021–9. https://doi. org/10.1016/j.vaccine.2019.01.014 PMID: 30685252 25. Sankilampi U, Honkanen PO, Bloigu A, Leinonen M. Persistence of antibodies to pneumococcal capsu- lar polysaccharide vaccine in the elderly. The Journal of infectious diseases. 1997; 176(4):1100–4. Epub 1997/10/23. 9333177. https://doi.org/10.1086/516521 PMID: 9333177 26. Vaccines against influenza WHO position paper—November 2012. Releve epidemiologique hebdoma- daire. 2012; 87(47):461–76. Epub 2012/12/06. PMID: 23210147. 27. Sherwin RL, Gray S, Alexander R, McGovern PC, Graepel J, Pride MW, et al. Distribution of 13-valent pneumococcal conjugate vaccine Streptococcus pneumoniae serotypes in US adults aged > = 50 years with community-acquired pneumonia. Journal of Infectious Diseases. 2013; 208(11):1813–20. https:// doi.org/10.1093/infdis/jit506 PMID: 24092845. 28. Isturiz RE, Ramirez J, Self WH, Grijalva CG, Counselman FL, Volturo G, et al. Pneumococcal epidemi- ology among us adults hospitalized for community-acquired pneumonia. Vaccine. 2019; 37(25):3352– 61. Epub 2019/05/11. https://doi.org/10.1016/j.vaccine.2019.04.087 PMID: 31072732. 29. Hausdorff WP, Feikin DR, Klugman KP. Epidemiological differences among pneumococcal serotypes. The Lancet Infectious diseases. 2005; 5(2):83–93. Epub 2005/02/01. https://doi.org/10.1016/S1473- 3099(05)01280-6 PMID: 15680778. 30. Romney MG, Hull MW, Gustafson R, Sandhu J, Champagne S, Wong T, et al. Large community out- break of Streptococcus pneumoniae serotype 5 invasive infection in an impoverished, urban population. Clinical infectious diseases: an official publication of the Infectious Diseases Society of America. 2008; 47(6):768–74. References Thorrington D, Andrews N, Stowe J, Miller E, van Hoek AJ. Elucidating the impact of the pneumococcal conjugate vaccine programme on pneumonia, sepsis and otitis media hospital admissions in England using a composite control. BMC medicine. 2018; 16(1):13. Epub 2018/02/09. https://doi.org/10.1186/ s12916-018-1004-z PMID: 29415741; PubMed Central PMCID: PMC5804014. 12. Rodrigo C, Bewick T, Sheppard C, Greenwood S, McKeever TM, Trotter CL, et al. Impact of infant 13- valent pneumococcal conjugate vaccine on serotypes in adult pneumonia. The European respiratory journal. 2015; 45(6):1632–41. Epub 2015/03/21. https://doi.org/10.1183/09031936.00183614 PMID: 25792633. 13. Boddington NL, Warburton F, Zhao H, Andrews N, Ellis J, Donati M, et al. Influenza vaccine effective- ness against hospitalisation due to laboratory-confirmed influenza in children in England in the 2015– 2016 influenza season—a test-negative case-control study. Epidemiology and infection. 2019; 147: e201-e. https://doi.org/10.1017/S0950268819000876 PMID: 31364557. 14. Suzuki M, Dhoubhadel BG, Ishifuji T, Yasunami M, Yaegashi M, Asoh N, et al. Serotype-specific effec- tiveness of 23-valent pneumococcal polysaccharide vaccine against pneumococcal pneumonia in adults aged 65 years or older: a multicentre, prospective, test-negative design study. The Lancet Infec- tious diseases. 2017; 17(3):313–21. Epub 2017/01/28. https://doi.org/10.1016/S1473-3099(17)30049- X PMID: 28126327. 15. Eletu SD, Sheppard CL, Thomas E, Smith K, Daniel P, Litt DJ, et al. Development of an Extended-Spec- ificity Multiplex Immunoassay for Detection of Streptococcus pneumoniae Serotype-Specific Antigen in Urine by Use of Human Monoclonal Antibodies. Clin Vaccine Immunol. 2017; 24(12). Epub 2017/10/06. https://doi.org/10.1128/CVI.00262-17 PMID: 28978509; PubMed Central PMCID: PMC5717182. 16. Eletu SD, Sheppard CL, Rose S, Smith K, Andrews N, Lim WS, et al. Re-validation and update of an extended-specificity multiplex assay for detection of Streptococcus pneumoniae capsular serotype/ser- ogroup-specific antigen and cell-wall polysaccharide in urine specimens. Access Microbiology. 2020. https://doi.org/10.1099/acmi.0.000094. 17. Oken MM, Creech RH, Tormey DC, Horton J, Davis TE, McFadden ET, et al. Toxicity and response cri- teria of the Eastern Cooperative Oncology Group. American journal of clinical oncology. 1982; 5 (6):649–55. Epub 1982/12/01. PMID: 7165009. 15 / 17 PLOS Medicine | https://doi.org/10.1371/journal.pmed.1003326 October 23, 2020 PLOS MEDICINE Effectiveness of the PPV23 vaccine against vaccine serotype pneumococcal pneumonia 18. Textor J, Hardt J, Knuppel S. DAGitty: a graphical tool for analyzing causal diagrams. Epidemiology (Cambridge, Mass). 2011; 22(5):745. Epub 2011/08/04. https://doi.org/10.1097/EDE. 0b013e318225c2be PMID: 21811114. 19. Sintes X, Nebot M, Izquierdo C, Ruiz L, DomI´Nguez A, Bayas JM, et al. Factors associated with pneu- mococcal and influenza vaccination in hospitalized people aged ⩾65 years. Epidemiology and infection. 2011; 139(5):666–73. PLOS Medicine | https://doi.org/10.1371/journal.pmed.1003326 October 23, 2020 References Epub 2008/08/12. https://doi.org/10.1086/591128 PMID: 18690803. 31. Pimenta F, Gertz RE Jr., Park SH, Kim E, Moura I, Milucky J, et al. Streptococcus infantis, Streptococ- cus mitis, and Streptococcus oralis Strains With Highly Similar cps5 Loci and Antigenic Relatedness to Serotype 5 Pneumococci. Frontiers in microbiology. 2018; 9:3199. Epub 2019/01/24. https://doi.org/10. 3389/fmicb.2018.03199 PMID: 30671034; PubMed Central PMCID: PMC6332807. 32. Jackson ML. Use of self-reported vaccination status can bias vaccine effectiveness estimates from test- negative studies. Vaccine: X. 2019; 1:100003. https://doi.org/10.1016/j.jvacx.2018.100003. 33. Ciabattini A, Nardini C, Santoro F, Garagnani P, Franceschi C, Medaglini D. Vaccination in the elderly: The challenge of immune changes with aging. Seminars in Immunology. 2018; 40:83–94. https://doi. org/10.1016/j.smim.2018.10.010 PMID: 30501873 34. Daniel P, Rodrigo C, Bewick T, Sheppard C, Greenwood S, McKeever TM, et al. Increased incidence of adult pneumococcal pneumonia during school holiday periods. ERJ open research. 2017; 3(1). Epub 2017/03/23. https://doi.org/10.1183/23120541.00100–2016 PMID: 28326311; PubMed Central PMCID: PMC5349095 openres.ersjournals.com. 35. Rodrigo C, Bewick T, Sheppard C, Greenwood S, Macgregor V, Trotter C, et al. Pneumococcal sero- types in adult non-invasive and invasive pneumonia in relation to child contact and child vaccination PLOS Medicine | https://doi.org/10.1371/journal.pmed.1003326 October 23, 2020 16 / 17 PLOS MEDICINE Effectiveness of the PPV23 vaccine against vaccine serotype pneumococcal pneumonia status. Thorax. 2014; 69(2):168–73. Epub 2013/09/21. https://doi.org/10.1136/thoraxjnl-2013-203987 PMID: 24048505. 36. British Thoracic Society B, Lawrence H, Lim WS. National Audit Report: Adult Community Acquired Pneumonia Audit 2018–2019. Online: 2019. 37. Robert Koch Institut S. Recommentations of the Standing Committee on Vacciantion (STIKO) at the Robert Koch Institue—2017/2018. 2017:Page 371. 38. Thorrington D, van Rossum L, Knol M, de Melker H, Rumke H, Hak E, et al. Impact and cost-effective- ness of different vaccination strategies to reduce the burden of pneumococcal disease among elderly in the Netherlands. PLoS ONE. 2018; 13(2):e0192640. Epub 2018/02/10. https://doi.org/10.1371/journal. pone.0192640 PMID: 29425249; PubMed Central PMCID: PMC5806887. 39. Caya CA, Boikos C, Desai S, Quach C. Dosing regimen of the 23-valent pneumococcal vaccination: a systematic review. Vaccine. 2015; 33(11):1302–12. Epub 2015/02/11. https://doi.org/10.1016/j. vaccine.2015.01.060 PMID: 25660650. 40. Takashima M, Lambert SB, Paynter S, Ware RS. Relative effectiveness of revaccination with 23-valent pneumococcal polysaccharide vaccine in preventing invasive pneumococcal disease in adult Aboriginal and Torres Strait Islander people, Australia. Vaccine. 2019; 37(12):1638–41. Epub 2019/02/21. https:// doi.org/10.1016/j.vaccine.2019.01.085 PMID: 30782489. 17 / 17
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Kate O'Brien in the Theatre
Irish university review/Irish University review
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1 O’Brien, ‘Self Portrait’, quoted in Eibhear Walshe, Kate O’Brien: A Writing Life (Dublin: Irish Academic Press, 2008), pp.37-38. 1 O’Brien, ‘Self Portrait’, quoted in Eibhear Walshe, Kate O’Brien: A Writing Life (Dublin: Irish Academic Press 2008) pp 37 38 , Press, 2008), pp.37-38. Kate O’Brien in the Theatre James Moran The New Kate O’Brien The New Kate O’Brien Kate O’Brien first came to public attention through her theatre work rather than her prose fiction. In 1926, the twenty-eight-year-old O’Brien had abandoned her marriage of less than a year and was working for a charity in London. Here her social circle included the actor and fellow UCD graduate, Veronica Turleigh. As O’Brien later remembered: At this time I was mixing with young actors and writers. I used to talk about the theatre a lot and Veronica Turleigh, who was just out of the Academy of Dramatic Art, very young, bet me a pound that I wouldn’t write a play in a month to give to her and I did! She took it to an agent, and paid me the pound which was very decent of her, and he read it and set me twenty-five pounds on its chances, he thought so well of it. I never before or since heard of an agent doing that…it was a young, over-written play, very tragic, very kitchen sink, over-romantic but I do think it had some merit.1 That period of her life was soon superseded, as O’Brien went on to win acclaim as a novelist, with her 1931 volume Without My Cloak scooping the James Tait Black, the Hawthornden, and the Book Society prizes. Her first novel portrays the problems of 1 O’Brien, ‘Self Portrait’, quoted in Eibhear Walshe, Kate O’Brien: A Writing Life (Dublin: Irish Academic Press, 2008), pp.37-38. bourgeois life in Mellick (a fictional version of O’Brien’s hometown of Limerick), and her association with the middle-class was highlighted in the 1945 film Brief Encounter, in which Celia Johnson’s character wishes to visit a library in order to collect ‘the new Kate O’Brien’.2 Yet before she became known as a novelist, it was Kate O’Brien’s theatre work that had first seen her exploring the idea of middle-class angst. When she responded to Veronica Turleigh’s bet, and completed the play Distinguished Villa in 1926, O’Brien created a work set in the London suburb of Brixton, and portrayed the desperate lives led by the aspidistra-growing and railway-commuting class. The plot revolves around the aspirational Mabel Hemworth, who boasts that she and her husband ‘are known round here as the model of what a married couple should be. y g ( , ), p 3 O’Brien, Distinguished Villa: A Play in Three Acts (London: Ernest Benn, 1926), pp.20-1. 2 Quoted by Aintzane Legarreta Mentxaka, Kate O’Brien and the Fiction of Identity: Sex, Art and Politics in Mary Lavelle and Other Writings (Jefferson: McFarland, 2011), p.101. 2 Quoted by Aintzane Legarreta Mentxaka, Kate O’Brien and the Fiction of Identity: Sex, Art and Politics in Mary Lavelle and Other Writings (Jefferson: McFarland, 2011), p.101. 3 O’Brien, Distinguished Villa: A Play in Three Acts (London: Ernest Benn, 1926), pp.20-1. 4 Ivor Brown, ‘The Theatre: Behind the Lace Curtain’, Saturday Review, 7 August 1926, p.148. y g p 5 O’Brien, Distinguished Villa, p.60. 4 Ivor Brown, ‘The Theatre: Behind the Lace Curtain’, Saturday Review, 7 August 1926, p.148. 5 O’Brien, Distinguished Villa, p.60. , 5 O’Brien, Distinguished Villa, p.60. vor Brown, ‘The Theatre: Behind the Lace Curtain’, Saturday Review, 7 August 1926, p.148. 6 ‘From our London Correspondent, Western Morning News, 21 August 1926, p.6. p , g , g , p 7 Eibhear Walshe, Kate O’Brien: A Writing Life, p.38. , g f , p 8 ‘Irish Girl Typist’s Play a London Hit’, New York Times, 14 July 1926, p.19. J.W.G., ‘Distinguish Villa’ Irish Independent 28 January 1929 p 6 Kate O’Brien in the Theatre We’ve been married over eleven years, and yet everyone remarks on what a success we are, and what a nice refined home we keep’.3 But the arrival and then potential departure of a female lodger, Frances Llewellyn, makes Mabel’s husband realize that he is in fact profoundly miserable. Frances meanwhile has developed a mutually loving relationship with a young man, John Morris, but their plans for a future together are ruined because John is compelled to marry another woman who has become pregnant and (untruthfully) claims that he is the father. The play ends with Mabel’s husband committing suicide in the kitchen. Critics felt broadly impressed by this realistic depiction of a social class that was not over-represented on the English stage. As Ivor Brown asked, rhetorically, when reviewing O’Brien’s debut play for the Saturday Review, ‘how many a time have we settled down at eight-thirty to endure until eleven the company of ill-conditioned aristocrats whose only occupation is adultery tempered by epigrams?’. Brown declared himself temperamentally inclined to like any play in which the dramatist had instead opted to ‘limit the incomes of the characters to six pounds a week, provide each with the common necessity of doing a day’s work […] I find myself proclaiming a masterpiece before the curtain has risen’.4 O’Brien had, after all, attempted to show the frustrations of such six-pound-a-week characters, with Mabel Hemworth’s husband pointing to the quietly miserable existence of ‘any of the chaps I know’: ‘Same old life eternally. Eight forty-five train every morning regular. –Same fellows in the carriages. –Same newspapers. –Same jokes. –Same office. –Same slogging. –Same lunch. –Home again. – Same station. –Same walk. –Same gossip in the Avenue. –Ethelberta, do’ye think they’re happy?’5 O’Brien’s play initially appeared for one evening only, on 2 May 1926, at O’Brien’s play initially appeared for one evening only, on 2 May 1926, at O’Brien’s play initially appeared for one evening only, on 2 May 1926, at London’s Aldwych Theatre, given by the amateur company, The Repertory Players, yet bad luck nearly doomed the work to utter obscurity. 8 ‘Irish Girl Typist’s Play a London Hit’, New York Times, 14 July 1926, p.19. J.W.G., ‘Distinguis Villa’, Irish Independent, 28 January 1929, p.6. p , g , g 7 Eibhear Walshe, Kate O’Brien: A Writing Life, p.38. Kate O’Brien in the Theatre As the Western Morning News later reported of O’Brien’s script, ‘On the night before the outbreak of the general strike a remarkable play was produced in London, a play which was undeservingly robbed of its due acclamation owing to the temporary suppression of the newspapers’.6 Nonetheless, the theatre producers José Levy and Henry Millar learned of O’Brien’s text, and brought it to professional production at the Little Theatre two months later. This time, a great deal of press attention came O’Brien’s way. The drama appeared for a two-month run in London, and then toured across England.7 One newspaper reported that ‘four American producers were already after the American rights to the play’, and although that US production never occurred, the play did arrive at the Abbey in Dublin at the start of 1929, where, according to the Irish Independent it ‘drew a large audience’ despite being ‘by no means great work’.8 due acclamation owing to the temporary suppression of the newspapers’.6 Nonetheless, the theatre producers José Levy and Henry Millar learned of O’Brien’s text, and brought it to professional production at the Little Theatre two months later. This time, a great deal of press attention came O’Brien’s way. The drama appeared for a two-month run in London, and then toured across England.7 One newspaper reported that ‘four American producers were already after the American rights to the play’, and although that US production never occurred, the play did arrive at the Abbey in Dublin at the start of 1929, where, according to the Irish Independent it ‘drew a large audience’ despite being ‘by no means great work’.8 , , y , p 10 ‘Irish Players’, Irish Independent, 6 September 1926, p.6. , , y , p 10 ‘Irish Players’, Irish Independent, 6 September 1926, p.6. 9 See ‘Theatres’, The Times, 29 July 1926, p.10. g , , y , p 13 ‘London Letter’, Gloucester Citizen, 3 May 1926, p.4. y p 14 ‘Another Irish Playwright’, Northern Whig, 14 July 1926, p.6. ‘Dramatis Personae’, Observer, 25 April 1926, p.15. The Irish playwright T.C. Murray had recently come to prominence in the British theatre, so may also be implicated in these comments. 9 See ‘Theatres’, The Times, 29 July 1926, p.10. y p 15 Quoted in Lorna Reynolds, Kate O’Brien: A Literary Portrait (Gerrards Cross: Colin Smythe, 1987), p.39. 11 Irish Girl Typist s Play a London Hit , New York Times, 14 July 1 12 ‘London Stage Notes’ New York Times 18 July 1926 p X1 y p p p 11 ‘Irish Girl Typist’s Play a London Hit’, New York Times, 14 July 192 12 ‘L d St N t ’ N Y k Ti 18 J l 1926 X1 yp y , , y , p 12 ‘London Stage Notes’, New York Times, 18 July 1926, p.X1. G yp y , N , J 12 ‘London Stage Notes’, New York Times, 18 July 1926, p.X1. y p p Irish Girl Typist’s Play a London Hit’, New York T Sean O’Casey Sean O’Casey The London run of Kate O’Brien’s play began on 12 July 1926, and took place concurrently with the arrival of Sean O’Casey’s much-anticipated work, The Plough and the Stars, in the British capital. That year, O’Casey’s drama had its London premiere on 12 May at the Fortune Theatre, and then transferred to the city’s New Theatre about two weeks before Kate O’Brien’s work opened for its first run. O’Casey’s play had gained notoriety for causing riotous protests when premiered at Dublin’s Abbey Theatre the previous February, and in the summer of 1926 London newspapers therefore ran advertisements for British production of O’Casey’s ‘famous play’ alongside adverts for O’Brien’s Distinguished Villa.9 That first London run of O’Casey’s work came to an end on Saturday 4 September 1926, on exactly the same day that O’Brien’s Distinguished Villa finished its spell at the Little Theatre.10 O’Brien’s Distinguished Villa.9 That first London run of O’Casey’s work came to an end on Saturday 4 September 1926, on exactly the same day that O’Brien’s Distinguished Villa finished its spell at the Little Theatre.10 Somewhat inevitably, then, when O’Brien was first introduced in the British and US press she was repeatedly compared with O’Casey. On 14 July, for example, the New York Times commented that O’Brien’s play was likely to see her ‘Share Fame with Sean O’Casey’.11 Four days later, another piece in the New York Times announced O’Brien as ‘countrywoman of Sean O’Casey’.12 Meanwhile, in England, the Gloucester Citizen described how O’Brien’s play Distinguished Villa ‘is sordid only in the sense that “Juno and the Paycock” is sordid. Indeed, the young Irish playwright, Kate O’Brien, whose first effort this is, and Sean O’Casey, her countryman, have spiritually much in common’.13 Another implied comparison perhaps came in the Northern Whig’s depiction of O’Brien as ‘Yet another Irish playwright’, and in the Observer’s description of ‘Another Irish play’.14 O’Brien even received a telegram from O’Casey himself, declaring, ‘Dublin ventures to congratulate Limerick’.15 In particular, the biographical description of Kate O’Brien that was provided in some prominent newspapers appears to have been shaped by the recent introduction that the press had given to O’Casey. 16 ‘Plight of the Younger Irish Writers: Lecture by Mr. C. O’Leary’, Manchester Guardian, 21 October 1924, p.20. 1924, p.20. 17 ‘Best Literary Work of the Year’, Manchester Guardian, 24 March 1926, p.5. 16 ‘Plight of the Younger Irish Writers: Lecture by Mr. C. O’Leary’, Manchester Guardian, 21 October 1924, p.20. 17 ‘Best Literary Work of the Year’, Manchester Guardian, 24 March 1926, p.5. Sean O’Casey During October 1924 (after O’Casey had seen four of his plays produced at the Abbey Theatre in Dublin), the Manchester Guardian reported that O’Casey ‘had stood in a labour exchange queue only last week’.16 In March 1926, O’Casey then arrived in London to receive the Hawthornden Prize for his play Juno and the Paycock, and Lady Gregory accompanied him to the ceremony at the Aeolian Hall, where she made a a widely reported speech to commend his win. The Manchester Guardian reported what Lady Gregory had said, namely that: In particular, the biographical description of Kate O’Brien that was provided in some prominent newspapers appears to have been shaped by the recent introduction that the press had given to O’Casey. During October 1924 (after O’Casey had seen four of his plays produced at the Abbey Theatre in Dublin), the Manchester Guardian reported that O’Casey ‘had stood in a labour exchange queue only last week’.16 In March 1926, O’Casey then arrived in London to receive the Hawthornden Prize for his play Juno and the Paycock, and Lady Gregory accompanied him to the ceremony at the Aeolian Hall, where she made a a widely reported speech to commend his win. The Manchester Guardian reported what Lady Gregory had said, namely that: At the age of 14 Mr. O’Casey went to work in a warehouse at 4s. a week and afterwards got 9s. a week at a newsagent’s. He spent seven years working on the railway, and worked as a builder for some years. His eyesight was so bad in his youth that he was not able to learn to read, and he taught himself to read at the age of 16. When he had saved a few pence he went among the bookstalls and bought Shakespeare, from which time his dramatic education began.17 Shortly afterwards, that liberally fictionalized version of O’Casey’s biography found its echo in the initial reporting of Kate O’Brien’s personal circumstances. On 14 July 1926 the Manchester Guardian declared that: The management of the Little Theatre were nonplussed this morning when pressmen came asking for Miss Kate O’Brien, the young Irish girl whose play, ‘Distinguished Villa’, had last night impressed the audience and critics so favourably. p , , y , p 19 ‘Irish Girl Typist’s Play a London Hit’, New York Times, 14 July 1926, p.19. 18 ‘Our London Correspondence’, Manchester Guardian, 14 July 1926, p.8. yp y , , y , p 20 ‘The Theatre: Crooks and Cockneys’, Spectator, 6 August 1926, p.11. Sean O’Casey American managers also wanted a word with her about American rights, but she had forgotten to give the theatre her address, and it was only after a long search that she was discovered at her daily secretarial work in the office of the Sunshine League.18 If O’Casey had been queuing at the Labour exchange, the New York Times pointed out that ‘Miss O’Brien is a graduate of London’s queues, whose lines of patient men and women who wait hours for the theatres to open in order to buy tickets for inexpensive seats. “Many a queue have I stood in”, she said today when seen at her employer’s office’.19 There were also, perhaps, some more meaningful connections between O’Casey and O’Brien’s early work. For example, the Spectator’s review of Distinguished Villa called attention to the alliterative effect of parts of O’Brien’s text (‘how grave your glances grew’), something that offered a potential reminder of one of the most striking features of O’Casey’s Dublin trilogy.20 And O’Casey and O’Brien had certainly written plays that depicted the moral challenge of a woman becoming pregnant outside of marriage. Furthermore, the main character in Distinguished Villa was first brought to life marriage. Furthermore, the main character in Distinguished Villa was first brought to life by Una O’Connor, an actor who had been trained, and first become known as a performer, at the Abbey, and who would go on to perform in The Silver Tassie during 1929 as well as in the 1937 film of The Plough and the Stars.21 However, as we shall see in this article, that initial press comparison between O’Brien and O’Casey gave a somewhat misleading impression of what O’Brien was actually writing and how her theatrical career would develop. As we shall see in this article, O’Brien’s drama showed a recurring interest in dissecting the sexual dilemmas of the English middle-classes, a group whose love lives were not primarily of theatrical interest to O’Casey. Furthermore, even though both O’Casey and O’Brien were interested in fictionalizing extra-marital sex, O’Brien initially sought to bring such depictions onto the stage of an English rather than an Irish theatre. Thus, although O’Brien subsequently became famous for being censored in the Irish state, her earliest stage work shows how she was first compelled to adjust to the rules of British rather than Irish censorship. 21 In O’Brien’s play, O’Connor played Mabel Hemworth with an impeccable London accent – but had earlier in 1926 been seen playing the ‘Irish shrew’ in T.C. Murray’s play Autumn Fire at the same theatre. See Ivor Brown, ‘The Theatre: Behind the Lace Curtain’, Saturday Review, 7 August 1926, p.148, and Brown, ‘The Theatre: Three Kinds of Playboy’, Saturday Review, 24 April 1926, p.536. See also Christopher Murray, Sean O’Casey: Writer at Work (Dublin: Gill & Macmillan, 2004), p.207. Rather Frank Passages 22 Sean O’Casey, The Complete Plays of Sean O’Casey, 5 vols (London: Macmillan, 1984), I, 81. y, p y f y, ( , ), , 23 O’Casey, The Complete Plays, I, 214. 22 Sean O’Casey, The Complete Plays of Sean O’Casey, 5 vols (London: Macmillan, 1984), I, 81. 23 O’Casey, The Complete Plays, I, 214. Sean O’Casey Four days later there was a director’s meeting about O’Casey’s drama, after which Lady Gregory wrote that George O’Brien, the Irish government’s representative on the Abbey broad (whose presence came with the Abbey’s subsidy), had also taken offence at that part of O’Casey’s script. According to Gregory, ‘O’Brien sat up in his chair reiterating at intervals, “That song is objectionable”’. Gregory added, ‘We had already decided that it must go, but left it as a bone for him to gnaw at’.24 Shortly afterwards, James B. Fagan directed the British premiere of The Plough and the Stars in London, and Rosie’s song was originally included in the typed script that was sent to the British censor. However, the censor placed a big blue cross next to the song, forbidding it from London performance before a British licence could be issued on 13 May 1926.25 However, the Abbey directors demanded that the song be cut in performance, and so the original Irish audiences never saw that provocative, if comically framed, sexual reference. As Lady Gregory noted in her journal on 20 September 1926, ‘Yeats says [O’]Casey said about the song that must be removed from his play, “Yes, it’s a pity. It would offend thousands. But it ought to be there”’. Four days later there was a director’s meeting about O’Casey’s drama, after which Lady Gregory wrote that George O’Brien, the Irish government’s representative on the Abbey broad (whose presence came with the Abbey’s subsidy), had also taken offence at that part of O’Casey’s script. According to Gregory, ‘O’Brien sat up in his chair reiterating at intervals, “That song is objectionable”’. Gregory added, ‘We had already decided that it must go, but left it as a bone for him to gnaw at’.24 Shortly afterwards, James B. Fagan directed the British premiere of The Plough and the Stars in London, and Rosie’s song was originally included in the typed script that was sent to the British censor. However, the censor placed a big blue cross next to the song, forbidding it from London performance before a British licence could be issued on 13 May 1926.25 When Kate O’Brien’s play Distinguished Villa first appeared on the London stage, she wished to deal with a similar theme to O’Casey: the subplot of her play revolves around a woman who has sex with two men and becomes pregnant by one of them. ( y , ), p 25 British Library, Lord Chamberlain’s Collection, LCP 1926/21, The Plough and the Stars, fol.I Gregory, quoted in The Years of O Casey, 1921 1926: A Documentary History, ed. by Robert H Ricahrd Burnham (Gerrards Cross: Colin Smythe, 1992), p.284. 24 Gregory, quoted in The Years of O’Casey, 1921-1926: A Documentary History, ed. by Robert H 24 Gregory, quoted in The Years of O’Casey, 1921-1926: A Documentary History, ed. by Robert Hogan and Ricahrd Burnham (Gerrards Cross: Colin Smythe, 1992), p.284. Sean O’Casey Nonetheless, in later life, O’Brien remained aware of the restrictions placed upon Ireland’s theatres, and she would remain a champion of the sexually transgressive figures of the Irish playhouse during her more mature years. Rather Frank Passages In Juno and the Paycock, Sean O’Casey broached the idea of Mary Boyle’s pregnancy with such kid-gloved delicacy that, today, members of the audience are sometimes left bewildered about what exactly the play is revealing: Jerry (passionately). Scorn! I love you, love you, Mary! Mary (rising, and looking him in the eyes). Even though… Mary (rising, and looking him in the eyes). Even though… Jerry. Even though you threw me over for another man; even though you gave me many a bitter word! Jerry. Even though you threw me over for another man; even though you gave me many a bitter word! Mary. Yes, yes, I know; but you love me, even though…even though…I’m…goin’…goin’…(He looks at her questioningly, and fear gathers in his eyes). Ah, I was thinkin’ so….You don’t know everything! Jerry (poignantly). Surely to God, Mary, you don’t mean that…that…that… Mary. Now you know all, Jerry; now you know all!22 The meaning may have been veiled, but it did allow O’Casey’s play to appear on the Dublin stage in 1924 and the London stage in 1925. He encountered more problems afterwards when he wrote The Plough and the Stars and included a prostitute who was supposed to sing about unmarried pregnancy. O’Casey wanted the prostitute to sing: We cuddled and kissed with devotion, till th’ night from th’ mornin’ had fled; An’ there, to our joy, a bright bouncin’ boy We cuddled and kissed with devotion, till th’ night from th’ mornin’ had fled; An’ there, to our joy, a bright bouncin’ boy Was dancin’ a jig in th’ bed!23 Was dancin’ a jig in th’ bed!23 However, the Abbey directors demanded that the song be cut in performance, and so the original Irish audiences never saw that provocative, if comically framed, sexual reference. As Lady Gregory noted in her journal on 20 September 1926, ‘Yeats says [O’]Casey said about the song that must be removed from his play, “Yes, it’s a pity. It would offend thousands. But it ought to be there”’. g y, q f y, y Ricahrd Burnham (Gerrards Cross: Colin Smythe, 1992), p.284. 24 Gregory, quoted in The Years of O Casey, 1921-1926: A Documentary History, ed. by Robert Hogan and Ricahrd Burnham (Gerrards Cross: Colin Smythe, 1992), p.284. Sean O’Casey However, O’Brien had to navigate the situation in a different way than O’Casey. His Dublin plays were prepared for the Abbey before transferring to London: so he was accustomed to navigating Irish sensibilities first. But her Distinguished Villa was prepared for London before subsequently appearing at the Abbey. This meant that, in the first instance, O’Brien was preparing her text for a different censorship regime than O’Casey, as the Irish stage was regulated separately in these matters from the rest of Britain. From 1737, British theatres were subject to a system of prior censorship, and the Licensing Act of that year required that any manager who wanted to stage a play first had to submit it to the Lord Chamberlain. This rule initially applied to London, and British towns with royal residences, but was extended more widely across the country by 1843, a situation that was destined to continue until 1968. By contrast (and despite Ireland’s status as part of the United Kingdom between 1801 and 1922) Ireland never had a pre- production model of censoring or licensing plays. Instead, half a century after the British Licensing Act, the Irish parliament approved the Dublin Stage Regulation Act (1786), His Dublin plays were prepared for the Abbey before transferring to London: so he was accustomed to navigating Irish sensibilities first. But her Distinguished Villa was prepared for London before subsequently appearing at the Abbey. This meant that, in the first instance, O’Brien was preparing her text for a different censorship regime than O’Casey, as the Irish stage was regulated separately in these matters from the rest of Britain. From 1737, British theatres were subject to a system of prior censorship, and the Licensing Act of that year required that any manager who wanted to stage a play first had to submit it to the Lord Chamberlain. This rule initially applied to London, and British towns with royal residences, but was extended more widely across the country by 1843, a situation that was destined to continue until 1968. By contrast (and despite Ireland’s status as part of the United Kingdom between 1801 and 1922) Ireland never had a pre- production model of censoring or licensing plays. Instead, half a century after the British Licensing Act, the Irish parliament approved the Dublin Stage Regulation Act (1786), which instituted a regime of patented theatres for Dublin city and county. ( y, , 1926/21, The Plough and the Stars, fol.I.17); Mrs Gogan’s description ‘Orange bitch’ (fol.III.4); Bessie’s descriptions ‘bloody’ (fol.III.5), ‘backside’ (fol.III.13) and ‘bitch’ (fol.IV.17); and Peter’s thrice repeated 26 This potentially meant editing the script for a British production. In 1925 the Lord Chamberlain did approve the printed Macmillan script of O’Casey’s Juno and the Paycock, after the show had appeared in Dublin, without correction (British Library, Lord Chamberlain’s Collection, LCP 1925/41, Juno and the 26 This potentially meant editing the script for a British production. In 1925 the Lord Chamberlain did approve the printed Macmillan script of O’Casey’s Juno and the Paycock, after the show had appeared in Dublin, without correction (British Library, Lord Chamberlain’s Collection, LCP 1925/41, Juno and the Paycock). However, the following year the Lord Chamberlain demanded a number of changes to the typescript he received of The Plough and the Stars before it could be seen on the British stage: as well as 26 This potentially meant editing the script for a British production. In 1925 the Lord Chamberlain Dublin, without correction (British Library, Lord Chamberlain s Collection, LCP 1925/41, Juno and the Paycock). However, the following year the Lord Chamberlain demanded a number of changes to the typescript he received of The Plough and the Stars before it could be seen on the British stage: as well as deleting Rosie’s song about pregnancy, the British censor also forbade London audiences from hearing Jack Clitheroe’s line ‘don’t mind that old bitch’ (British Library, Lord Chamberlain’s Collection, LCP 1926/21 Th Pl h d h S f l I 17) M G ’ d i i ‘O bi h’ (f l III 4) B i ’ Paycock). However, the following year the Lord Chamberlain demanded a number of changes to the typescript he received of The Plough and the Stars before it could be seen on the British stage: as well as deleting Rosie’s song about pregnancy, the British censor also forbade London audiences from hearing 26 This potentially meant editing the script for a British production. In 1925 the Lord Chamberlain did approve the printed Macmillan script of O’Casey’s Juno and the Paycock, after the show had appeared in Dublin, without correction (British Library, Lord Chamberlain’s Collection, LCP 1925/41, Juno and the Paycock). However, the following year the Lord Chamberlain demanded a number of changes to the typescript he received of The Plough and the Stars before it could be seen on the British stage: as well as deleting Rosie’s song about pregnancy, the British censor also forbade London audiences from hearing Jack Clitheroe’s line ‘don’t mind that old bitch’ (British Library, Lord Chamberlain’s Collection, LCP 1926/21, The Plough and the Stars, fol.I.17); Mrs Gogan’s description ‘Orange bitch’ (fol.III.4); Bessie’s descriptions ‘bloody’ (fol.III.5), ‘backside’ (fol.III.13) and ‘bitch’ (fol.IV.17); and Peter’s thrice repeated 26 This potentially meant editing the script for a British production. In 1925 the Lord Chamberlain did approve the printed Macmillan script of O’Casey’s Juno and the Paycock, after the show had appeared in deleting Rosie’s song about pregnancy, the British censor also forbade London audiences from hea Jack Clitheroe’s line ‘don’t mind that old bitch’ (British Library, Lord Chamberlain’s Collection, L ‘lowsey bastard’ (fol.III.15). The British censor also questioned whether the barmen should say ‘bloody’ (fol.II.13); whether Rosie should deliver her line ‘You louse, you louse you […] If I was a man, or you were a woman, I’d bate th’ puss o’ you!’ (fol.II.16); whether the Covey should deliver his line describing the deaths of the British Lancers in ‘a volley from th’ Post Office that stretched half o’ them’ (fol.III.3); Lieutenant Langon’s wounded line about ‘Everyone else escapin’ an’ me getting’ th’ belly ripped asundher […] My God, it must be me own blood!’ (fol.III.18); and Nora’s two offstage screams of pain (fol.III.21). 27 ‘Irish Lady’s Play’, Irish Independent, 12 July 1926, p.8. [ ] y , ( ); 27 ‘Irish Lady’s Play’, Irish Independent, 12 July 1926, p.8. ‘lowsey bastard’ (fol.III.15). The British censor also questioned whether the barmen should say ‘bloody’ (fol.II.13); whether Rosie should deliver her line ‘You louse, you louse you […] If I was a man, or you were a woman, I’d bate th’ puss o’ you!’ (fol.II.16); whether the Covey should deliver his line describing the deaths of the British Lancers in ‘a volley from th’ Post Office that stretched half o’ them’ (fol III 3); g y p g g y pp […] My God, it must be me own blood!’ (fol.III.18); and Nora’s two offstage screams of pain (fol.III.21). wsey bastard’ (fol.III.15). The British censor also questioned whether the barmen should say ‘blood l II 13) h h R i h ld d li h li ‘Y l l [ ] If I Sean O’Casey In preparing to put his work on at the Abbey, then, O’Casey and his collaborators had to ensure that they did not put at risk the permission granted for the premises – the Abbey’s physical building in Dublin. Only secondarily, after the work was slated for the London stage, did O’Casey have to worry about acquiring any licence for the dramatic work itself by submitting his writing to the Lord Chamberlain in the British capital 26 By contrast, Kate O’Brien needed to make sure that, straight away, the sexual descriptions spoken by her actors would be acceptable to the British Lord Chamberlain, Lord Cromer. Indeed, the opening night of her first work on 12 July was almost cancelled because of the reservations of Cromer, and on the Friday before the piece was due onstage the following Monday, the producers at the Little Theatre had to engage in some emergency negotiation with him. As O’Brien explained after the premiere, her play: […] was sent to the Lord Chamberlain last week. Unfortunately, owing to a rush, a copy, containing some rather frank passages, which had been deleted for the production, was used, and the Lord Chamberlain’s department said that it would be impossible to pass the play for production on Monday, as it would have to go before the Advisory Committee. On Friday we wrote to the Lord Chamberlain himself, enclosing a properly cut copy and explaining our mistake. He very kindly read it himself on the same day, and communicated his permission on Friday.27 It appears that the Lord Chamberlain’s objections were withdrawn because O’Brien, or someone acting on her behalf, made a series of changes to the script, toning down the piece’s references to extra-marital sex and to unwanted pregnancy. In the play Distinguished Villa, the suggestively named character of Gwen Tupman sleeps with two men, Alec Webberley and John Morris, and realizing that she is pregnant, confronts Alec. In the script that was revised on 9 July 1926 for submission to the Lord Chamberlain we therefore find the following exchange between Gwen (who is impregnated) and Alec (who is in denial), in which it is worth noting exactly what is erased: Gwen. (Suddenly quiet again). Look, I tell you I’m going to have your child and all you can do is gasp at me that it isn’t true! What good is that going to do? Oh. Sean O’Casey Alec – I was sporting with you. I know we were both only having a bit of fun – I meant it just like you did. I wasn’t a bit huffed when you didn’t ring me up – you gave me a good time. and I liked you – but I wanted to stick to John. I’m fond of him – I am, honestly – and I know you’re fearfully sweet on Miss Llewellyn – you never made any bones about that. But it’s all different now, I’m going to have a baby! We’ve get to see it through; We must stick together Alec, We will, won’t we? Alec. Gwen. I beg of you to talk quietly. I don’t believe, to begin with, that you are going to have a child. [all of this]. It’s hysteria. And, secondly, if [it’s true] you are I deny that I am responsible. You are engaged to a man whom you like far better than you ever liked me – and – well, I don’t want to be rotten – but you know – well, you once admitted to me, when we were friends……that he…. Gwen. Oh I know, I told you – I remember – but Alec, that was nothing. It was only once. Never before or since, never [long, long ago] – and I know – I swear to you, Alec – that it’s you. I know, I tell you. I’m telling you the truth.28 These erasures were evidently designed to enable the play to reach the public stage in London. As Sos Eltis has correctly pointed out, ‘The Lord Chamberlain’s Office remained wary of theatrical treatments of female sexuality, especially where any explicit reference to biological or medical facts was involved’.29 Hence, the revisions made to O’Brien’s original text deleted some of the specific details of Gwen’s pregnancy and the acts that led to it (doing away with the lines, ‘I’m going to have a baby!’, ‘you are going to have a child’, ‘we were both only having a bit of fun’, and ‘It was only once’). In addition, some of the revisions that were made in order to satisfy the Lord Chamberlain were also made in the text that was prepared for publication in London. 28 British Library, Lord Chamberlain’s Collection, LCP 1926/28, Distinguished Villa: ‘REVISED VERSION July 9th 1926’, fol.12. 29 Eltis, Acts of Desire: Women and Sex on Stage 1800-1930 (Oxford: Oxford University Press, 2013), p.206. Gwen (Crawling against the armchair by the fire) 28 British Library, Lord Chamberlain’s Collection, LCP 1926/28, Distinguished Villa: ‘REVISED VERSION July 9th 1926’ fol 12 VERSION July 9 1926 , fol.12. 29 Eltis, Acts of Desire: Women and Sex on Stage 1800-1930 (Oxford: Oxford University Press, 20 p.206. VERSION July 9 1926 , fols 17 18. 31 O’Brien, Distinguished Villa: A Play in Three Acts (London: Ernest Benn, 1926), p.55. 30 British Library, Lord Chamberlain’s Collection, LCP 1926/28, Distinguished Villa: ‘REVISED VERSION July 9th 1926’ fols 17 18 30 British Library, Lord Chamberlain’s Collection, LCP 1926/28, Distinguished Villa: ‘REVISED VERSION July 9th 1926’, fols 17-18. 30 British Library, Lord Chamberlain’s Collection, LCP 1926/28, Distinguished Villa: ‘REVISED VERSION July 9th 1926’, fols 17-18. y, , , g VERSION July 9th 1926’, fols 17-18. 30 British Library Lord Chamberlain’s Collection LCP 1926/28 Distinguished Villa: ‘REVISED y , y , p 33 O’Brien, The Land of Spices (London: Heinemann, 1941), p.157. 34 32 Reynolds, Kate O’Brien: A Literary Portrait, p.75. Sean O’Casey This printed text did not need to pass before the eyes of the Lord Chamberlain, although potentially could have been prosecuted for lewdness or immorality under the Obscene Publications Act of 1857. Thus, we find a passage such as the following has been corrected for performance on the stage: Gwen (Crawling against the armchair by the fire) I’m afraid, I don’t know anything about a baby! I can’t have a baby all by myself – I must be married – I must, I must – I’m [a] respectable girl, I tell you, If I tell this lie to John I’ll never be able to be good again – I’ll hate my baby! I don’t want to be sick, and hurt and ugly – I was a fool ever to go with you – but you said it would be all right – Alec – you swore it was all right. Alec. Hush I tell you, Don’t rave at me [Look here] Gwen. I can’t help you […]30 Alec. Hush I tell you, Don’t rave at me [Look here] Gwen. I can’t help you […]30 Most of those alterations also occur in the published version of O’Brien’s text, where we find the same passage rendered as follows: Most of those alterations also occur in the published version of O’Brien’s text, where we find the same passage rendered as follows: Gwen (crawling against the arm-chair by the fire): I’m afraid! I don’t know anything about a baby! I can’t have a baby all by myself. I must be married – I must, I must! I’m a respectable girl, I tell you. You said it would be all right. Alec, you swore it was all right! Alec: Hush! I tell you. Don’t rave at me, Gwen. I can’t help you; it’s up to Morris, you see – and he’ll do it.31 Thus, in the printed text of the play – just as in the version that was staged in the playhouse – we find an erasure of Gwen’s regretful thoughts about her potential child (I’ll hate my baby’) and of her thoughts about sex (‘I was a fool ever to go with you’). Kate O’Brien certainly included these words in her original manuscript, but they never reached any audience. (I’ll hate my baby’) and of her thoughts about sex (‘I was a fool ever to go with you’). f p ( ) p 34 Aintzane Legarreta Mentxaka, p.9. , f p ( 34 Aintzane Legarreta Mentxaka, p.9. 35 J.W.G., ‘Distinguished Villa’, Irish Independent, 28 January 1929, p.6. Sean O’Casey Kate O’Brien certainly included these words in her original manuscript, but they never reached any audience. One of the best-known ideas about O’Brien’s career, then, is that she was stymied by repressive attitudes in Ireland. As Lorna Reynolds puts it, ‘Apart from the damage to her own reputation which the vagaries of the new Calvinism in Irish society caused, Kate O’Brien did not like the illiberal, self-complacent and Puritanic society that developed in Ireland in the thirties and forties of this century’.32 Certainly, in later years her 1936 novel Mary Lavelle and her 1941 novel The Land of Spices were notoriously banned under Ireland’s 1929 Censorship of Publications Act. Famously, Mary Lavelle depicts adultery between a married Spanish man and a young Irish woman, as well as an indication of lesbian attraction; whilst The Land of Spices contains the line ‘She saw Etienne and her father, in the embrace of love’.33 As Aintzane Legarreta Mentxaka writes, an ‘important consequence of the ban on Mary Lavelle and The Land of Spices was that Kate O’Brien became a sort of unofficial hero for those readers – particularly for the artists among them – who felt oppressed by the Irish government’s intervention on arts and culture from the 1930s to the 1950s, and for those who disagreed with Irish policies and the role of the church in the following decades’.34 Yet, as we can see from her travails with Distinguished Villa, O’Brien had been aware of censorship for longer than that. And if we look at her earliest stage work we can see that it was the rules of British rather than Irish censorship that O’Brien was first compelled to navigate. than that. And if we look at her earliest stage work we can see that it was the rules of British rather than Irish censorship that O’Brien was first compelled to navigate. g , , , p 38 Irish Independent, 2 June 1927, p.8. ‘Entertainments’, The Times, 1 June 1927, p.14. 39 The Bridge appeared in London at the Arts Theatre Club, an organization set up for dramatic short runs and possible transfers elsewhere, which had opened on 20 April 1927. In the first weeks of that club, the actors performed as their third ever show O’Brien’s The Bridge, for just six performances (including a matinee), from 31 May to 4 June 1927. Suburban Sex In addition, although the newspapers’ initial comparison of Kate O’Brien with Sean O’Casey may have helped to highlight certain aspects of her work and biography, that association with him ultimately set up some false expectations about the kind of writing that O’Brien was creating and about the overall development of her career. O’Casey’s early work, after all, was attempting to chronicle Dublin tenement life, whereas O’Brien’s breakthrough play had attempted to describe middle-class existence in a suburb of the English capital. In fairness to the Irish press, its reporters did not generally follow the comparison with O’Casey made by the British and US newspapers. Indeed, the Irish Independent saw more of a connection between Kate O’Brien’s drama and the work of Lennox Robinson. The newspaper suggested that O’Brien’s focus on the middle-class was ‘an attempt to give dramatic shape to what is, on the English stage at any rate, new material’, but that on the Irish stage such an approach looked less original, with Lennox Robinson having demonstrated ‘his fondness for knocking out the front of a redbrick villa for our amusement’.35 At the time that her first play appeared she did consider moving her future playwriting to an Irish location, telling journalists about her plan for scripting a drama called The Silver Roan, which would be set in Limerick and would be concerned with the Limerick Horse Show. But that play never emerged for the public.36 Instead, in 1927 she produced as her second play The Bridge, a drama set in a house in the English called The Silver Roan, which would be set in Limerick and would be concerned with the Limerick Horse Show. But that play never emerged for the public.36 Instead, in 1927 she produced as her second play The Bridge, a drama set in a house in the English countryside where another Englishwoman endures the frustrations of sex. This time, the lead character is Lisa Mordaunt, who feels bored with her husband. He, in turn, feels born with her, and flirts with Lisa’s friend. Other relatives feel similarly sexually unfulfilled, until a visiting Irish engineer arrives on the scene. Lisa then realizes that she loves this newcomer, but ultimately decides that she cannot leave her husband.37 Evidently, countryside where another Englishwoman endures the frustrations of sex. This time, the lead character is Lisa Mordaunt, who feels bored with her husband. y , y , p 37 ‘The Bridge’, The Era, 8 June 1927, p.4. 36 Reynolds, Kate O’Brien: A Literary Portrait, p.39. y , y 37 ‘The Bridge’, The Era, 8 June 1927, p.4. 36 Reynolds, Kate O’Brien: A Literary Portrait, p.39. 3 y p ridge’, The Era, 8 June 1927, p.4. 40 O’Brien, Gloria Gish: A Comedy in Three Acts, National Library of Ireland, MS 36,179, fol.93. Suburban Sex He, in turn, feels born with her, and flirts with Lisa’s friend. Other relatives feel similarly sexually unfulfilled, until a visiting Irish engineer arrives on the scene. Lisa then realizes that she loves this newcomer, but ultimately decides that she cannot leave her husband.37 Evidently, elements of the plot recycled what O’Brien had done with Distinguished Villa (which also saw a stranger arriving in an English household and making a married couple aware of the romantic possibilities outside their marriage). However, her second play did not achieve the acclaim of O’Brien’s debut, with critics pointing to a kind of awkwardness in the dialogue. One Irish critic complained that the characters of The Bridge ‘talk in a stilted, bookish way’, whilst an English critic declared that O’Brien should not ‘labour so hard after an epigrammatic smartness in dialogue, which she rarely attains’.38 In the end, the script never transferred beyond a limited run in a London fringe venue.39 elements of the plot recycled what O’Brien had done with Distinguished Villa (which also saw a stranger arriving in an English household and making a married couple aware of the romantic possibilities outside their marriage). However, her second play did not achieve the acclaim of O’Brien’s debut, with critics pointing to a kind of awkwardness in the dialogue. One Irish critic complained that the characters of The Bridge ‘talk in a stilted bookish way’ whilst an English critic declared that O’Brien should not ‘labour so Despite those critical comments, in her next solo-authored theatre script, O’Brien returned to an English setting, and again set about imagining the sexual frustrations of another Englishwoman. This tightly plotted play, called Gloria Gish and written in about 1931, is set in the prosperous suburb of Surrey during the 1920s. It revolves around a beautiful married woman from Ealing, Gladys, who is a kind of modern-day Helen of Troy and who wishes to become a movie star. She begins an adulterous affair with a figure going by the phallic name of ‘Vivien Rodd’, who apparently intends to produce films with her in them, claiming that he will turn her into the next ‘Gloria Gish’ (a fictional composite of Gloria Swanson and Lilian Gish). The play shows how Vivien plans to seduce Gladys by getting her alone in his apartment: Judy – She’ll be worth waiting for – you’ll see. Where are you going tonight? , y , y , , , 41 O’Brien, Gloria Gish: A Comedy in Three Acts, National Library of Ireland, MS 36,179, fol.97 , y , y , , , O’B i Gl i Gi h A C d i Th A N ti l Lib f I l d MS 36 179 f l 93 , y , y , , , 43 O’Brien, Gloria Gish: A Comedy in Three Acts, National Library of Ireland, MS 36,179, fol.137 42 O’Brien, Gloria Gish: A Comedy in Three Acts, National Library of Ireland, MS 36,179, fol.75. Suburban Sex Vivien – Dining at my flat. Judy (with a soft laugh). Ah, Viv! What am I to wish you? Bonne nuit?40 After this scene where Vivien explains his scheme, O’Brien intended that her audience would see the start of his planned seduction of Gladys, with the stage direction specifying that ‘Vivien takes her suddenly and kisses her. She yields at once to him, their kiss is long and close. When they move apart their manner has changed, has grown passionate and uneasy’. Gladys then promises Vivien, ‘We’ve hours and hours before us’, and they steal away to have sex, leaving Gladys’s husband abandoned.41 Nonetheless, towards the end of the play, Vivien Rodd forsakes Gladys, and the narrative suggests that perhaps Gladys’s husband will be able to repair the marriage. Yet that expectation is denied during the final moments of the play, when Gladys receives a telephone call from a second film producer, ‘a very charming and wealthy man’.42 As Gladys’s own husband remains within earshot, she plans what is presumably another adulterous liaison, with this producer who calls her ‘lovely’, and who responds to her desire for ‘cheering up’ by inviting her out to meet him in town.43 Sadly, this drama, Gloria Gish, was never performed onstage, and remains one of the unpublished jewels of the O’Brien archive. Instead, in 1931, the publication of her first novel Without My Cloak heralded a formal change in direction, selling 50,000 copies in only a few months, and ensuring that from then on she would be known primarily as a novelist rather than a dramatist. Today, few people remember O’Brien’s playwriting. Indeed, like her contemporaries Norah Hoult and Teresa Deevy, O’Brien’s finely wrought writing in general became scandalously neglected during the later twentieth century, as critics of Irish literature focused on a canon of largely male writers. y y 44 Anthony Roche, ‘The Ante Room as Drama’, in Eibhear Walshe, ed., Ordinary People Dancing: Essays on Kate O’Brien (Cork: Cork University Press, 1993), pp.85-100, p.89. y y g p 46 Brooks Atkinson, ‘At the Theatre’, New York Times, 23 November 1949, p.18. Atkinson had been a great supporter of Sean O’Casey throughout the previous decade. By contrast with Atkinson’s cutting remarks about O’Brien, two months earlier he had reviewed a revival of O’Casey’s The Silver Tassie which he praised as an early example of a ‘trend of the drama […] away from naturalism’, and as a play ‘by an Irishman who had Irish music ringing in his head’. Atkinson, ‘The Silver Tassie’, New York Times, 4 September 1949, p.45. 45 Mannock, ‘Which Play Failure did you most regret?’, The Era, 31 December 1936, p.16. September 1949, p.45. 47 ‘O’Casey Bans Festival Production’, Irish Times, 24 August 1961, p.6. p p 50 ‘Irish Writers Recognised Abroad’, Irish Independent, 9 December 1963, p.3. , , , y , p 49 ‘Famous Novelist Home in Limerick’, Limerick Leader, 28 April 1962, p.3. 50 y , , g , p 48 O’Brien, Letters, Irish Times, 24 February 1958, p.6. An Irresistible Force O’Brien did, nonetheless, retain her affinity with the theatre for many years. As Anthony Roche has correctly observed, her second novel The Ante-Room (1934) owes a great deal to Ibsen, and as Roche puts it, ‘the lessons learned as a dramatist by Kate O’Brien found their way into her writing of prose narrative’.44 Yet when her novelistic work did appear in the mouths of actors it tended to bring distinctly underwhelming results. In 1936, for example, her novel The Ante-Room was dramatized by John Perry for production at London’s Queen’s Theatre, and was largely regarded as a failure. P.L. Mannock of the Daily Herald wrote rather wistfully, ‘On the whole the play failure I regret most during 1936 was Kate O’Brien’s “Ante Room”. It wanted strengthening in several ways, but its texture was fine’.45 Similarly, in 1949, O’Brien herself decided to dramatize her seventh novel That Lady (1946), and when it arrived in production at New York’s Martin Beck Theater this historical drama set in Spain also proved a critical failure. The New York Times critic, Brooks Atkinson, who expressed a preference for more formally experimental fare – such as that which Sean O’Casey was now creating – declared, ‘Miss O’Brien’s writing is commonplace. She says the stock things with no distinction […] “That Lady” is ordinary stuff’.46 By the late 1950s, then, O’Brien grew more recognisable as a commentator about theatre rather than as a writer of plays. In 1958, the organizers of a tourist-friendly tourist event in Dublin, An Tóstal (‘a gathering’) had welcomed the submission of a new play by Sean O’Casey, but they then baulked at the Catholic hierarchy’s hostility towards O’Casey, and asked him to make ‘structural alterations’ to his work. Predictably, O’Casey took umbrage and withdrew the piece, with such developments reported excitedly in the press.47 In county Galway, Kate O’Brien kept an eye on these events, and on 21 February 1958 wrote a wry response in the Irish Times. She commented: excitedly in the press.47 In county Galway, Kate O’Brien kept an eye on these events, and on 21 February 1958 wrote a wry response in the Irish Times. She commented: The Tostal Council will not have heard it, but during these days we in the West keep hearing a noble growl from a grave under Ben Bulben. And indeed, indeed, we have disgraced ourselves again. Ah, what is the use? Macmillan, 1980), p.1021. 52 ‘Late Late Tribute to Great Man of Theatre’, Sunday Independent, 26 October 1969, p.4. 51 O’Casey, The Letters of Sean O’Casey: Volume II, 1942-1954, ed. by David Krause (New York Macmillan, 1980), p.1021. An Irresistible Force Cast a cold eye. And, horsemen, pass by – we entreat you.48 Here O’Brien was evidently quoting Yeats’s ‘Under Ben Bulben’, but she was also citing the famous words that Yeats had spoken to the rioting audience members during the first run of O’Casey’s The Plough and the Stars at the Abbey: ‘You have disgraced yourselves again; is this to be the recurring celebration of the arrival of Irish genius?’ Having had two of her own novels banned in Ireland, O’Brien must have known something of the frustration articulated by O’Casey, about whom she continued to describe in admiring terms. Indeed, in 1962, four years after the fuss over An Tóstal, O’Brien told one reporter that like ‘our other great writers, George Bernard Shaw and Sean O’Casey’, she intended to return to live in England, which she then did.49 The following year, in 1963, she gave a lecture in London in which she praised O’Casey, along with Joyce and Shaw, as being ‘the giants’.50 Yet, by the mid-twentieth-century, her admiration was not entirely reciprocated. Perhaps O’Casey had noticed O’Brien’s recurrent concern with the English middle-class, and told Frank McCarthy that O’Brien ‘shocks me a little with her pretentions. But then writers have to earn a living, & it’s a hard job nowadays’.51 Nonetheless, in old age, O’Brien’s thoughts about the theatre repeatedly appeared in the Irish media. Perhaps most notably, in autumn 1969 O’Brien attended the Dublin birthday celebrations for the co-founder of the Gate Theatre, Micheál Mac Liammóir, which involved the two of them appearing together on television for what the Sunday Independent described as ‘one of the most moving “Late Late Shows” ever’.52 Her subsequent correspondence reveals the depth of her warmth and affection for Mac Liammóir, who had recently been suffering from ill health. As O’Brien wrote to him: Ah, dear boy, how good you are – which is part of what I was trying to insist on over the birthday celebrations. But I expect as many people love you – and that’s a great many – know as well as I do that the base of all your graces and gifts lies deep, deep in your goodness […] Anyway, in a few hours from now, during the dawn of Wednesday, 3rd December (Feast of St. Francis Xavier) I shall have completed all of 72 years in human life. Extraordinary. An Irresistible Force Such an extraordinary waste of time which one ought to have understood was short and precious. However, there it is, gone – and much of it seemed so good while one was in it. Oh – I’ve been interrupted too often + now it’s late and the fire is dead. I’ll continue when I’ve entered my 73rd year. Meantime – you know all my wishes for Ah, dear boy, how good you are – which is part of what I was trying to insist on over the birthday celebrations. But I expect as many people love you – and that’s a great many – know as well as I do that the base of all your graces and gifts lies deep, deep in your goodness […] Anyway, in a few hours from now, during the dawn of Wednesday, 3rd December (Feast of St. Francis Xavier) I shall have completed all of 72 years in human life. Extraordinary. Such an extraordinary waste of time which one ought to have understood was short and precious. However, there it is, gone – and much of it seemed so good while one was in it. Oh – I’ve been interrupted too often + now it’s late and the fire is dead. I’ll you, pet - + how I resent this wretched suffering, + so deeply love + admire your gaiety of spirit – Love + kisses – goodnight, sweet prince – Kate.53 you, pet - + how I resent this wretched suffering, + so deeply love + admire your gaiety of spirit – Love + kisses – goodnight, sweet prince – Kate.53 you, pet - + how I resent this wretched suffering, + so deeply love + admire your Love + kisses – Kate.53 Kate.53 O’Brien would die in 1974, and her final years were far from comfortable, as she struggled with both alcohol and poverty. Yet she continued to champion Irish theatre during that final, difficult decade of her life, and her theatrical advocacy was still influential enough to appear in the press. For example, in 1969 she wrote an Irish Times article mourning the death of the actor Brid Lynch, an Abbey theatre actor from Kerry. 53 O’Brien letter to Mac Liammóir, National Library of Ireland, Mac Liammóir papers, MS 41,303 p p p y 54 O’Brien, ‘Long Distance’, Irish Times, 3 November 1969, p.10. y correspondence with people mostly associated with the theatre. , g , , y , p 56 O’Brien, ‘The Great BBC Row’, Irish Times, 2 March 1970, p.14. , g , , , p 55 O’Brien, ‘Long Distance’, Irish Times, 5 January 1970, p.8. 53 O’Brien letter to Mac Liammóir, National Library of Ireland, Mac Liammóir papers, MS 41,303/1 correspondence with people mostly associated with the theatre. 54 O’Brien ‘Long Distance’ Irish Times 3 November 1969 p 10 57 O’Brien, ‘Long Distance’, Irish Times, 7 April 1971, p.10. p g p by Joe Cleary (Cambridge: Cambridge University Press, 2014), 111-27, p.120. 59 Eibhear Walshe, ‘The Importance of Staging Oscar: Wilde at the Gate’, in The Oxford Handbook of Modern Irish Theatre, ed. by Nicholas Grene and Christopher Morash (Oxford: Oxford University Press, 2016), pp.217-30, p.218. , g , , p , p 58 Levitas, ‘Modernist Experiments in Irish Theatre’, in The Cambridge Companion to Irish Moder , g , , p , p 58 Levitas, ‘Modernist Experiments in Irish Theatre’, in The Cambridge Companion to Irish Modernism, ed. by Joe Cleary (Cambridge: Cambridge University Press 2014) 111-27 p 120 y ( g g y , ), , p Eibhear Walshe, ‘The Importance of Staging Oscar: Wilde at the Gate’, in The Oxford Handbook of n, ‘Long Distance’, Irish Times, 7 April 1971, p.10. O Brien, Long Distance , Irish Times, 7 April 1971, p.10. 58 Levitas, ‘Modernist Experiments in Irish Theatre’, in The Cambridge Companion to Irish Modernism, ed. by Joe Cleary (Cambridge: Cambridge University Press, 2014), 111-27, p.120. 59 Eibhear Walshe, ‘The Importance of Staging Oscar: Wilde at the Gate’, in The Oxford Handbook of Modern Irish Theatre, ed. by Nicholas Grene and Christopher Morash (Oxford: Oxford University Press, 2016), pp.217-30, p.218. 60 O’Brien, ‘Long Distance’, Irish Times, 7 April 1971, p.10. An Irresistible Force O’Brien observed that Lynch ‘gave a very special and precious gift to the art of the theatre – in Ireland, and wherever in the world she played for Ireland […] in her death Ireland has indeed lost a rare and special child’.54 At the start of 1970, O’Brien praised ‘the peculiar strength of Irish acting’ in the Irish Times.55 In the same newspaper she subsequently lauded the radio for giving her the freedom to listen ‘to Beckett – in uninterrupted peace’.56 But it was the management of the Gate Theatre that remained the subject of some of her highest theatrical praise. In 1971 she wrote in the Irish Times about her delighted reaction to: […] the reports that came over of Dublin’s Theatre Festival. Now, taken all over, it seems to be pretty damn good. The high light of course was the most happy, and almost unhoped-for, re-opening of the Gate Theatre. That was indeed an occasion – and how fortunate for those who were there to see and rejoice in it! Michael and Hilton back again on their old stamping ground, all newly beautified and refreshed for them.57 […] the reports that came over of Dublin’s Theatre Festival. Now, taken all over, it seems to be pretty damn good. The high light of course was the most happy, and almost unhoped-for, re-opening of the Gate Theatre. That was indeed an occasion d h f t t f th h th t d j i i it! , g , , p , p 61 Mac Liammóir to O’Brien 7 April 1971, National Library of Ireland, Mac Liammóir Papers, MS 41,288/20. 62 Mac Liammóir to O’Brien 7 April 1971, National Library of Ireland, Mac Liammóir Papers, MS 41,288/20. An Irresistible Force Mi h l d One might perhaps find it counter-intuitive that Kate O’Brien, whose own dramatic writing had focused upon achieving a realistic stage effect, would become so insistent a supporter of Micheál Mac Liammóir and Hilton Edwards, two men at the Gate, as Ben Levitas puts it, who ‘revelled in the opportunity to present full-blooded expressionist productions, opening by degrees to a wider vocabulary of theatrical presentation, and specifically intent on exposing naturalism as merely another formal style’.58 Yet, as we have already seen, O’Brien had a longstanding interest in connecting the stage world with a set of transgressive sexual energies, and evidently felt drawn Mac Liammóir and Edwards, who are correctly described by Eibhear Walshe as having ‘survived, and even flourished, as Ireland’s only visibly gay couple’.59 O’Brien felt a great affinity with Mac Liammóir and Hilton, and praised them in the Irish Times by saying that: […] they are an irresistible force, and that what they have given to Ireland is irrefutable and forever. They will please forgive me if I say of them, both such mad artists, that they have been a most strong educative force in the too-green island. Ireland owes to those two men far more than she can ever measure – and now thank God, she is going to go on to owe them more. The Gate is back, and that is extremely important and good news for Ireland’.60 Mac Liammóir read those words ‘with delight’ and he and Hilton Edwards wished to thank ‘dearest Kate’ ‘a thousand times for remembering us’.61 Thus, Kate O’Brien may have felt disillusioned with the direction that de Valera’s Ireland had taken, as she expressed in novels such as Pray for the Wanderer (1938) and The Last of Summer (1943). But she continued, demonstratively, to cherish and champion the actors, directors, and theatre makers of the Irish stage. As a young woman, she had explored the subversive potential of the stage by writing dramatic descriptions of female sexuality, whilst in older age she supported the disruptive energies of the Gate Theatre. She did much of her theatrical work in England, wrote plays about English settings, and needed to adjust her drama according to the dictates of the censor in London. Yet her non-fictional writings about theatre reveal her continuing commitment to the drama of her home country. An Irresistible Force As Mac Liammóir wrote to her, on behalf of himself and Hilton Edwards, ‘we both thank you, and you so far away too!’62 her home country. As Mac Liammóir wrote to her, on behalf of himself and Hilton Edwards, ‘we both thank you, and you so far away too!’62 her home country. As Mac Liammóir wrote to her, on behalf of himself and Hilton Edwards, ‘we both thank you, and you so far away too!’62
https://openalex.org/W2035001841
https://projecteuclid.org/journals/journal-of-applied-mathematics/volume-2013/issue-none/Complexity-of-Products-of-Some-Complete-and-Complete-Bipartite-Graphs/10.1155/2013/673270.pdf
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Complexity of Products of Some Complete and Complete Bipartite Graphs
Journal of applied mathematics
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1. Introduction graph 𝐺can be expressed as 𝜏(𝐺) = (1/𝑝) ∏𝑝−1 𝑘=1(𝑑−𝜆𝑘), where 𝜆0 = 𝑑, 𝜆1, 𝜆2, . . . , 𝜆𝑝−1 are the eigenvalues of the corresponding adjacency matrix of the graph. However, for a few special families of graphs there exist simple formulas that make it much easier to calculate and determine the number of corresponding spanning trees especially when these numbers are very large. One of the first results is due to Cayley [3] who showed that the complete graph on 𝑛vertices, 𝐾𝑛has 𝑛𝑛−2 spanning trees, 𝑛≥2. Another result is that 𝜏(𝐾𝑝,𝑞) = 𝑝𝑞−1𝑞𝑝−1, 𝑝, 𝑞≥1, where 𝐾𝑝,𝑞is the complete bipartite graph with bipartite sets containing 𝑝and 𝑞vertices, respectively. It is well known, as in, for example, [4, 5]. Another result is due to Sedl ́a ̌cek [6] who derived a formula for the wheel on 𝑛+1 vertices, 𝑊𝑛+1; he showed that 𝜏(𝑊𝑛+1) = ((3+√5)/2)𝑛+ ((3 −√5)/2)𝑛−2, for 𝑛≥3. Sedlacek [7] also later derived a formula for the number of spanning trees in a Mobius ladder, 𝑀𝑛, 𝜏(𝑀𝑛) = (𝑛/2)[(2 + √3)𝑛+ (2 −√3)𝑛+ 2] for 𝑛≥2. Another class of graphs by Boesch et al., for which an explicit formula has been derived, is based on a prism [8, 9]. In this work we deal with simple and finite undirected graphs 𝐺= (𝑉, 𝐸), where 𝑉is the vertex set and 𝐸is the edge set. For a graph 𝐺, a spanning tree in 𝐺is a tree which has the same vertex set as 𝐺. The number of spanning trees in 𝐺, also called the complexity of the graph, denoted by 𝜏(𝐺), is a well- studied quantity (for long time). A classical result of Kirchhoff [1], can be used to determine the number of spanning trees for 𝐺= (𝑉, 𝐸). Let 𝑉= {V1, V2, . . . , V𝑛}; then the Kirchhoff matrix 𝐻defined as 𝑛×𝑛, characteristic matrix, 𝐻= 𝐷−𝐴, where 𝐷 is the diagonal matrix whose elements are the degrees of the vertices of 𝐺. While 𝐴is the adjacency matrix of 𝐺, 𝐻= [𝑎𝑖𝑗] is defined as follows: (i) 𝑎𝑖𝑗= −1V𝑖and V𝑗are adjacent and 𝑖̸= 𝑗, (ii) 𝑎𝑖𝑗equals the degree of vertex V𝑖if 𝑖= 𝑗, (iii) 𝑎𝑖𝑗= 0 otherwise. (i) 𝑎𝑖𝑗= −1V𝑖and V𝑗are adjacent and 𝑖̸= 𝑗, (ii) 𝑎𝑖𝑗equals the degree of vertex V𝑖if 𝑖= 𝑗, (iii) 𝑎𝑖𝑗= 0 otherwise. All of the cofactors of 𝐻are equal to 𝜏(𝐺). There are other methods for calculating 𝜏(𝐺). Hindawi Publishing Corporation Journal of Applied Mathematics Volume 2013, Article ID 673270, 25 pages http://dx.doi.org/10.1155/2013/673270 Hindawi Publishing Corporation Journal of Applied Mathematics Volume 2013, Article ID 673270, 25 pages http://dx.doi.org/10.1155/2013/673270 Hindawi Publishing Corporation Journal of Applied Mathematics Volume 2013, Article ID 673270, 25 pages http://dx.doi.org/10.1155/2013/673270 S. N. Daoud1,2 1 Department of of Mathematics, Faculty of Science, Taibah University, Al Madinah 344, Saudi Arabia 2 Department of Mathematics, Faculty of Science, El-Menoufia University, Shebeen El-Kom, Egypt Correspondence should be addressed to S. N. Daoud; salamadaoud@gmail.com Received 2 June 2013; Revised 29 July 2013; Accepted 12 August 2013 Academic Editor: Roberto Barrio Copyright © 2013 S. N. Daoud. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. The number of spanning trees in graphs (networks) is an important invariant; it is also an important measure of reliability of a network. In this paper, we derive simple formulas of the complexity, number of spanning trees, of products of some complete and complete bipartite graphs such as cartesian product, normal product, composition product, tensor product, and symmetric product, using linear algebra and matrix analysis techniques. 1. Introduction Let 𝜇1 ≥𝜇1 ≥⋅⋅⋅≥𝜇𝑝 denote the eigenvalues of 𝐻matrix of a 𝑝point graph. Then it is easily shown that 𝜇𝑝= 0. Furthermore, Kelmans and Chelnokov [2] have shown that 𝜏(𝐺) = (1/𝑝) ∏𝑝−1 𝑘=1𝜇𝑘. The formula for the number of spanning trees in a d-regular Now, we can introduce the following lemmas. Lemma 1 (see [10]). Consider 𝜏(𝐺) = (1/𝑛2) det(𝑛𝐼−𝐷+ 𝐴) where 𝐴and 𝐷are the adjacency and degree matrices of 𝐺 and the complement of 𝐺, respectively, and 𝐼is the 𝑛× 𝑛unit matrix. 2 Journal of Applied Mathematics Journal of Applied Mathematics 2 Lemma 2. Let 𝐸𝑛(𝑥) be 𝑛× 𝑛matrix, 𝑥≥2 such that Lemma 3. Let 𝐴, 𝐵∈𝐹𝑛×𝑛and 𝐹∈𝐹𝑘𝑛×𝑘𝑛such that Lemma 2. Let 𝐸𝑛(𝑥) be 𝑛× 𝑛matrix, 𝑥≥2 such that Lemma 3. Let 𝐴, 𝐵∈𝐹𝑛×𝑛and 𝐹∈𝐹𝑘𝑛×𝑘𝑛such that Lemma 3. Let 𝐴, 𝐵∈𝐹𝑛×𝑛and 𝐹∈𝐹𝑘𝑛×𝑘𝑛such that 𝐸𝑛(𝑥) = ( ( ( ( ( ( 𝑥 1 ⋅⋅⋅⋅⋅⋅⋅⋅⋅1 1 d d d d ... ... d d d d ... ... d d d d ... ... d d d d 1 1 ⋅⋅⋅⋅⋅⋅⋅⋅⋅ 1 𝑥 ) ) ) ) ) ) . (1) 𝐹= ( ( ( ( ( ( 𝐴 𝐵 ⋅⋅⋅⋅⋅⋅⋅⋅⋅𝐵 𝐵d d d d ... ... d d d d ... ... d d d d ... ... d d d d 𝐵 𝐵⋅⋅⋅⋅⋅⋅⋅⋅⋅ 𝐵 𝐴 ) ) ) ) ) ) . (4)h (4) Then, Then, Then, det 𝐹= [det (𝐴−𝐵)]𝑘−1 det [𝐴+ (𝑘−1) 𝐵] . (5) (5) det (𝐸𝑛) = (𝑥+ 𝑛−1) (𝑥−1)𝑛−1. (2) (2) Lemma 4 (see [11]). Let 𝐴∈𝐹𝑛×𝑛, let 𝐵∈𝐹𝑛×𝑚, let 𝐶∈𝐹𝑚×𝑛, and let 𝐷∈𝐹𝑚×𝑚; assume that 𝐴, 𝐷are nonsingular matrices. Then Proof. From the definition of the circulant determinants, we have det (𝐸𝑛(𝑥)) = det ( ( ( ( ( ( 𝑥 1 ⋅⋅⋅⋅⋅⋅⋅⋅⋅1 1 d d d d ... ... d d d d ... ... d d d d ... ... d d d d 1 1 ⋅⋅⋅⋅⋅⋅⋅⋅⋅ 1 𝑥 ) ) ) ) ) ) det (𝐴𝐵 𝐶𝐷) = (−1)𝑛𝑚det (𝐴−𝐵𝐷−1𝐶) det 𝐷 = (−1)𝑛𝑚det 𝐴det (𝐷−𝐶𝐴−1𝐵) . (6) (6) Formulas in Lemmas 2, 3, and 4 give some sort of symmetry in some matrices which facilitates our calculation of determinants. = 𝑛 ∏ 𝑗=1 (𝑥+ 𝜔𝑗+ 𝜔2 𝑗+ 𝜔3 𝑗+ ⋅⋅⋅+ 𝜔𝑛−1 𝑗 ) = (𝑥+ 1 + 1 + ⋅⋅⋅+ 1) 2. Number of Spanning Trees of Cartesian Product of Graphs The Cartesian product, 𝐺1 × 𝐺2, is the simple graph with vertex set 𝑉(𝐺1 × 𝐺2) = 𝑉1 × 𝑉2 and edge set 𝐸(𝐺1 × 𝐺2) = [(𝐸1 × 𝑉2) ∪(𝑉1 × 𝐸2)] such that two vertices (𝑢1, 𝑢2) and (V1, V2) are adjacent in 𝐺1 × 𝐺2 if and only if either 𝑢1 = V1 and 𝑢2 is adjacent to V2 in 𝐺2 or 𝑢1 is adjacent to V1 in 𝐺1 and 𝑢2 = V2 [12]. [(𝐸1 × 𝑉2) ∪(𝑉1 × 𝐸2)] such that two vertices (𝑢1, 𝑢2) and (V1, V2) are adjacent in 𝐺1 × 𝐺2 if and only if either 𝑢1 = V1 and 𝑢2 is adjacent to V2 in 𝐺2 or 𝑢1 is adjacent to V1 in 𝐺1 and 𝑢2 = V2 [12]. Theorem 5. For 𝑛, 𝑚≥1, we have d d d d d d 1 ... d d ... ... d d 1 1 ⋅⋅⋅⋅⋅⋅ ⋅⋅⋅ ⋅⋅⋅ ⋅⋅⋅ 1 0 0 ⋅⋅⋅⋅⋅⋅ 0 1 ⋅⋅⋅ 1 𝑚+ 2 ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) = 1 4(𝑚+ 𝑛)2 det ( ( ( ( ( ( ( ( ( ( 𝑛+ 2 2 ⋅⋅⋅ 2 1 ⋅⋅⋅⋅⋅⋅ 1 2 d d ... ... d d ... ... d d 2 ... d d ... 2 ⋅⋅⋅ 2 𝑛+ 2 1 ⋅⋅⋅⋅⋅⋅ 1 1 ⋅⋅⋅⋅⋅⋅ 1 𝑚+ 2 2 ⋅⋅⋅ 2 ... d d ... 2 d d ... ... d d ... ... d d 2 1 ⋅⋅⋅⋅⋅⋅ 1 2 ⋅⋅⋅ 2 𝑚+ 2 ) ) ) ) ) ) ) ) ) ) × det ( ( ( ( ( ( ( ( ( ( 𝑛+ 2 0 ⋅⋅⋅ 0 −1 ⋅⋅⋅⋅⋅⋅ −1 0 d d ... ... d d ... ... d d 0 ... d d ... 0 ⋅⋅⋅ 0 𝑛+ 2 −1 ⋅⋅⋅⋅⋅⋅ −1 −1 ⋅⋅⋅⋅⋅⋅ −1 𝑚+ 2 0 ⋅⋅⋅ 0 ... d d ... 0 d d ... ... d d ... ... d d 0 −1 ⋅⋅⋅⋅⋅⋅ −1 0 ⋅⋅⋅ 0 𝑚+ 2 ) ) ) ) ) ) ) ) ) ) = 1 4(𝑚+ 𝑛)2 det ( 𝐴 𝐵 𝐵𝑇𝐶) × det ( 𝐷𝐸 𝐸𝑇𝐹) = 1 4(𝑚+ 𝑛)2 × det 𝐴det (𝐶−𝐵𝑇𝐴−1𝐵) × det 𝐷det (𝐹−𝐸𝑇𝐷−1𝐸) = 1 4(𝑚+ 𝑛)2 det ( 𝑛+ 2 2 ⋅⋅⋅ 2 2 d d ... ... d d 2 2 ⋅⋅⋅ 2 𝑛+ 2 ) 𝑚×𝑚 × det ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( 𝑛+ 2 1 ⋅⋅⋅ 1 0 ⋅⋅⋅⋅⋅⋅ 0 0 1 ⋅⋅⋅ ⋅⋅⋅ ⋅⋅⋅ ⋅⋅⋅⋅⋅⋅ 1 1 d d ... ... d d ... 1 d d d d d d ... ... d d 1 ... d d ... ... d d d d d d ... 1 ⋅⋅⋅ 1 𝑛+ 2 0 ⋅⋅⋅⋅⋅⋅ 0 ... d d d d d d ... Theorem 5. For 𝑛, 𝑚≥1, we have 0 ⋅⋅⋅⋅⋅⋅ 0 𝑚+ 2 1 ⋅⋅⋅ 1 ... d d d d d d ... ... d d ... 1 d d ... ... d d d d d d ... ... d d ... ... d d 1 ... d d d d d d 1 0 ⋅⋅⋅⋅⋅⋅ 0 1 ⋅⋅⋅ 1 𝑚+ 2 1 ⋅⋅⋅⋅⋅⋅ ⋅⋅⋅ ⋅⋅⋅ ⋅⋅⋅ 1 0 0 1 ⋅⋅⋅ ⋅⋅⋅ ⋅⋅⋅ ⋅⋅⋅⋅⋅⋅ 1 𝑛+ 2 1 ⋅⋅⋅ 1 0 ⋅⋅⋅⋅⋅⋅ 0 1 d d d d d d ... 1 d d ... ... d d ... ... d d d d d d ... ... d d 1 ... d d ... ... d d d d d d ... 1 ⋅⋅⋅ 1 𝑛+ 2 0 ⋅⋅⋅⋅⋅⋅ 0 ... d d d d d d ... 0 d d 0 𝑚+ 2 1 ⋅⋅⋅ 1 ... d d d d d d ... ... d d ... 1 d d ... ... d d d d d d 1 ... d d ... ... d d 1 1 ⋅⋅⋅⋅⋅⋅ ⋅⋅⋅ ⋅⋅⋅ ⋅⋅⋅ 1 0 0 ⋅⋅⋅⋅⋅⋅ 0 1 ⋅⋅⋅ 1 𝑚+ 2 ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) = 1 4(𝑚+ 𝑛)2 det ( ( ( ( ( ( ( ( ( ( 𝑛+ 2 2 ⋅⋅⋅ 2 1 ⋅⋅⋅⋅⋅⋅ 1 2 d d ... ... d d ... ... d d 2 ... d d ... 2 ⋅⋅⋅ 2 𝑛+ 2 1 ⋅⋅⋅⋅⋅⋅ 1 1 ⋅⋅⋅⋅⋅⋅ 1 𝑚+ 2 2 ⋅⋅⋅ 2 ... d d ... 2 d d ... ... d d ... ... d d 2 1 ⋅⋅⋅⋅⋅⋅ 1 2 ⋅⋅⋅ 2 𝑚+ 2 ) ) ) ) ) ) ) ) ) ) × det ( ( ( ( ( ( ( ( ( ( 𝑛+ 2 0 ⋅⋅⋅ 0 −1 ⋅⋅⋅⋅⋅⋅ −1 0 d d ... ... d d ... ... d d 0 ... d d ... 0 ⋅⋅⋅ 0 𝑛+ 2 −1 ⋅⋅⋅⋅⋅⋅ −1 −1 ⋅⋅⋅⋅⋅⋅ −1 𝑚+ 2 0 ⋅⋅⋅ 0 ... d d ... 0 d d ... ... d d ... ... Theorem 5. For 𝑛, 𝑚≥1, we have 𝜏(𝐾2 × 𝐾𝑚,𝑛) = 𝑚𝑛−1𝑛𝑚−1(𝑚+ 2)𝑛−1 × (𝑛+ 2)𝑚−1 (𝑛+ 𝑚+ 2) . (7) (7) We can generalize the previous lemma as follows. P We can generalize the previous lemma as follows. × (𝑛+ 2)𝑚−1 (𝑛+ 𝑚+ Proof Applying Lemma 1 we have We can generalize the previous lemma as follows. We can generalize the previous lemma as follows. × (𝑛+ 2)𝑚−1 (𝑛+ Proof. Applying Lemma 1, we have We can generalize the previous lemma as follows. Proof. Applying Lemma 1, we have Proof. Applying Lemma 1, we have 𝜏(𝐾2 × 𝐾𝑚,𝑛) = 1 (2 (𝑚+ 𝑛))2 det (2 (𝑚+ 𝑛) 𝐼−𝐷+ 𝐴) = 1 4(𝑚+ 𝑛)2 𝜏(𝐾2 × 𝐾𝑚,𝑛) = 1 (2 (𝑚+ 𝑛))2 det (2 (𝑚+ 𝑛) 𝐼−𝐷+ 𝐴) = 1 4(𝑚+ 𝑛)2 Journal of Applied Mathematics 3 nal of Applied Mathematics × det ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( 𝑛+ 2 1 ⋅⋅⋅ 1 0 ⋅⋅⋅⋅⋅⋅ 0 0 1 ⋅⋅⋅ ⋅⋅⋅ ⋅⋅⋅ ⋅⋅⋅⋅⋅⋅ 1 1 d d ... ... d d ... 1 d d d d d d ... ... d d 1 ... d d ... ... d d d d d d ... 1 ⋅⋅⋅ 1 𝑛+ 2 0 ⋅⋅⋅⋅⋅⋅ 0 ... d d d d d d ... 0 ⋅⋅⋅⋅⋅⋅ 0 𝑚+ 2 1 ⋅⋅⋅ 1 ... d d d d d d ... ... d d ... 1 d d ... ... d d d d d d ... ... d d ... ... d d 1 ... d d d d d d 1 0 ⋅⋅⋅⋅⋅⋅ 0 1 ⋅⋅⋅ 1 𝑚+ 2 1 ⋅⋅⋅⋅⋅⋅ ⋅⋅⋅ ⋅⋅⋅ ⋅⋅⋅ 1 0 0 1 ⋅⋅⋅ ⋅⋅⋅ ⋅⋅⋅ ⋅⋅⋅⋅⋅⋅ 1 𝑛+ 2 1 ⋅⋅⋅ 1 0 ⋅⋅⋅⋅⋅⋅ 0 1 d d d d d d ... 1 d d ... ... d d ... ... d d d d d d ... ... d d 1 ... d d ... ... d d d d d d ... 1 ⋅⋅⋅ 1 𝑛+ 2 0 ⋅⋅⋅⋅⋅⋅ 0 ... d d d d d d ... 0 d d 0 𝑚+ 2 1 ⋅⋅⋅ 1 ... d d d d d d ... ... d d ... 1 d d ... ... Theorem 5. For 𝑛, 𝑚≥1, we have d d 0 −1 ⋅⋅⋅⋅⋅⋅ −1 0 ⋅⋅⋅ 0 𝑚+ 2 ) ) ) ) ) ) ) ) ) ) = 1 4(𝑚+ 𝑛)2 det ( 𝐴 𝐵 𝐵𝑇𝐶) × det ( 𝐷𝐸 𝐸𝑇𝐹) = 1 4(𝑚+ 𝑛)2 × det 𝐴det (𝐶−𝐵𝑇𝐴−1𝐵) × det 𝐷det (𝐹−𝐸𝑇𝐷−1𝐸) = 1 4(𝑚+ 𝑛)2 det ( 𝑛+ 2 2 ⋅⋅⋅ 2 2 d d ... ... d d 2 2 ⋅⋅⋅ 2 𝑛+ 2 ) = 1 4(𝑚+ 𝑛)2 det ( 𝐴 𝐵 𝐵𝑇𝐶) × det ( 𝐷𝐸 𝐸𝑇𝐹) = 1 4(𝑚+ 𝑛)2 × det 𝐴det (𝐶−𝐵𝑇𝐴−1𝐵) × det 𝐷det (𝐹−𝐸𝑇𝐷−1𝐸) = 1 4(𝑚+ 𝑛)2 × det 𝐴det (𝐶−𝐵𝑇𝐴−1𝐵) × det 𝐷det (𝐹−𝐸𝑇𝐷−1𝐸) = 1 4(𝑚+ 𝑛)2 det ( 𝑛+ 2 2 ⋅⋅⋅ 2 2 d d ... ... d d 2 2 ⋅⋅⋅ 2 𝑛+ 2 ) 𝑚×𝑚 Journal of Applied Mathematics 4 Journal of Ap × det ( ( ( ( ( 𝑛(𝑚+ 2) + 𝑚(2𝑚+ 3) 𝑛+ 2𝑚 2𝑛+ 3𝑚 𝑛+ 2𝑚 ⋅⋅⋅ 2𝑛+ 3𝑚 𝑛+ 2𝑚 2𝑛+ 3𝑚 𝑛+ 2𝑚 d d ... ... d d 2𝑛+ 3𝑚 𝑛+ 2𝑚 2𝑛+ 3𝑚 𝑛+ 2𝑚 ⋅⋅⋅ 2𝑛+ 3𝑚 𝑛+ 2𝑚 𝑛(𝑚+ 2) + 𝑚(2𝑚+ 3) 𝑛+ 2𝑚 ) ) ) ) )𝑛×𝑛 × det ( 𝑛+ 2 0 ⋅⋅⋅ 0 0 d d ... ... d d 0 0 ⋅⋅⋅ 0 𝑛+ 2 ) 𝑚×𝑚 × det ( ( ( ( ( 𝑛(𝑚+ 2) + (𝑚+ 4) 𝑛+ 2 −𝑚 𝑛+ 2 ⋅⋅⋅ −𝑚 𝑛+ 2 −𝑚 𝑛+ 2 d d ... ... d d −𝑚 𝑛+ 2 −𝑚 𝑛+ 2 ⋅⋅⋅ −𝑚 𝑛+ 2 𝑛(𝑚+ 2) + (𝑚+ 4) 𝑛+ 2 ) ) ) ) )𝑛×𝑛 = 1 4(𝑚+ 𝑛)2 × 2𝑚det ( ( ( 𝑛+ 2 2 1 ⋅⋅⋅ 1 1 d d ... ... d d 1 1 ⋅⋅⋅ 1 𝑛+ 2 2 ) ) )𝑚×𝑚 × (2𝑛+ 3𝑚 𝑛+ 2𝑚) 𝑛 det ( ( ( 𝑛(𝑚+ 2) + 𝑚(2𝑚+ 3) 2𝑛+ 3𝑚 1 ⋅⋅⋅ 1 1 d d ... ... d d 1 1 ⋅⋅⋅ 1 𝑛(𝑚+ 2) + 𝑚(2𝑚+ 3) 2𝑛+ 3𝑚 ) ) )𝑛×𝑛 × det ( 𝑛+ 2 0 ⋅⋅⋅ 0 0 d d ... ... d d 0 0 ⋅⋅⋅ 0 𝑛+ 2 ) 𝑚×𝑚 × ( −𝑚 𝑛+ 2) 𝑛 det ( ( ( 𝑛(𝑚+ 2) + (𝑚+ 4) −𝑚 1 ⋅⋅⋅ 1 1 d d ... ... Theorem 5. For 𝑛, 𝑚≥1, we have d d 1 1 ⋅⋅⋅ 1 𝑛(𝑚+ 2) + (𝑚+ 4) −𝑚 ) ) )𝑛×𝑛 = 1 × 2𝑚× (𝑛+ 2 + 𝑚−1) (𝑛+ 2 −1) 𝑚−1 ⋅⋅⋅ 2𝑛+ 3𝑚 𝑛+ 2𝑚 d ... d 2𝑛+ 3𝑚 𝑛+ 2𝑚 2𝑛+ 3𝑚 𝑛+ 2𝑚 𝑛(𝑚+ 2) + 𝑚(2𝑚+ 3) 𝑛+ 2𝑚 ) ) ) ) )𝑛×𝑛 × det ( ( ( ( ( 𝑛(𝑚+ 2) + (𝑚+ 4) 𝑛+ 2 −𝑚 𝑛+ 2 ⋅⋅⋅ −𝑚 𝑛+ 2 −𝑚 𝑛+ 2 d d ... ... d d −𝑚 𝑛+ 2 −𝑚 𝑛+ 2 ⋅⋅⋅ −𝑚 𝑛+ 2 𝑛(𝑚+ 2) + (𝑚+ 4) 𝑛+ 2 ) ) ) ) )𝑛×𝑛 = 1 4(𝑚+ 𝑛)2 × 2𝑚det ( ( ( 𝑛+ 2 2 1 ⋅⋅⋅ 1 1 d d ... ... d d 1 1 ⋅⋅⋅ 1 𝑛+ 2 2 ) ) )𝑚×𝑚 = 1 4(𝑚+ 𝑛)2 × 2𝑚det ( ( ( 𝑛+ 2 2 1 ⋅⋅⋅ 1 1 d d ... ... d d 1 1 ⋅⋅⋅ 1 𝑛+ 2 2 ) ) )𝑚×𝑚 × (2𝑛+ 3𝑚 𝑛+ 2𝑚) 𝑛 det ( ( ( 𝑛(𝑚+ 2) + 𝑚(2𝑚+ 3) 2𝑛+ 3𝑚 1 ⋅⋅⋅ 1 1 d d ... ... d d 1 1 ⋅⋅⋅ 1 𝑛(𝑚+ 2) + 𝑚(2𝑚+ 3) 2𝑛+ 3𝑚 ) ) )𝑛×𝑛 × det ( 𝑛+ 2 0 ⋅⋅⋅ 0 0 d d ... ... d d 0 0 ⋅⋅⋅ 0 𝑛+ 2 ) 𝑚×𝑚 × ( −𝑚 𝑛+ 2) 𝑛 det ( ( ( 𝑛(𝑚+ 2) + (𝑚+ 4) −𝑚 1 ⋅⋅⋅ 1 1 d d ... ... d d 1 1 ⋅⋅⋅ 1 𝑛(𝑚+ 2) + (𝑚+ 4) −𝑚 ) ) )𝑛×𝑛 = 1 4(𝑚+ 𝑛)2 × 2𝑚× (𝑛+ 2 2 + 𝑚−1) (𝑛+ 2 2 −1) 𝑚−1 × (2𝑛+ 3𝑚 𝑛+ 2𝑚) 𝑛 × (𝑛(𝑚+ 2) + 𝑚(2𝑚+ 3) 2𝑛+ 3𝑚 + 𝑛−1) × ( −𝑚 𝑛+ 2) 𝑛 det ( ( ( 𝑛(𝑚+ 2) + (𝑚+ 4) −𝑚 1 ⋅⋅⋅ 1 1 d d ... ... Theorem 5. For 𝑛, 𝑚≥1, we have d d 1 1 ⋅⋅⋅ 1 𝑛(𝑚+ 2) + (𝑚+ 4) −𝑚 ) ) )𝑛×𝑛 = 1 4(𝑚+ 𝑛)2 × 2𝑚× (𝑛+ 2 2 + 𝑚−1) (𝑛+ 2 2 −1) 𝑚−1 × (2𝑛+ 3𝑚 𝑛+ 2𝑚) 𝑛 × (𝑛(𝑚+ 2) + 𝑚(2𝑚+ 3) 2𝑛+ 3𝑚 + 𝑛−1) Journal of Applied Mathematics 5 Journal of Applied Mathematics 5 × (𝑛(𝑚+ 2) + 𝑚(2𝑚+ 3) 2𝑛+ 3𝑚 −1) 𝑛−1 × (𝑛+ 2)𝑚× (−𝑚 𝑛+ 2) 𝑛 × (−𝑛(𝑚+ 2) + (𝑚+ 4) 𝑚 + 𝑛−1) × (−𝑛(𝑚+ 2) + (𝑚+ 4) 𝑚 −1) 𝑛−1 . (8) × (𝑛(𝑚+ 2) + 𝑚(2𝑚+ 3) 2𝑛+ 3𝑚 −1) 𝑛−1 × (𝑛+ 2)𝑚× (−𝑚 𝑛+ 2) 𝑛 × (−𝑛(𝑚+ 2) + (𝑚+ 4) 𝑚 + 𝑛−1) × (−𝑛(𝑚+ 2) + (𝑚+ 4) 𝑚 −1) 𝑛−1 . (8) Theorem 6. For 𝑚, 𝑛≥1, we have Theorem 6. For 𝑚, 𝑛≥1, we have Theorem 6. For 𝑚, 𝑛≥1, we have us, Theorem 6. For 𝑚, 𝑛≥1, we have us, Theorem 6. For 𝑚, 𝑛≥1, we have Thus, 𝜏(𝐾2 × 𝐾𝑚,𝑛) = 𝑚𝑛−1𝑛𝑚−1(𝑚+ 2)𝑚−1(𝑛+ 2)𝑚−1 × (𝑛+ 𝑚+ 2) . (9) particular, 𝜏(𝐾3 × 𝐾𝑚,𝑛) = 3𝑛𝑚−1𝑚𝑛−1(𝑚+ 3)2𝑛−2(𝑛+ 3)2𝑚−2 × (𝑛+ 𝑚+ 3)2. (11) 𝜏(𝐾3 × 𝐾𝑚,𝑛) = 3𝑛𝑚−1𝑚𝑛−1(𝑚+ 3)2𝑛−2(𝑛+ 3)2𝑚−2 × (𝑛+ 𝑚+ 3)2. (11) (11) In particular, 𝜏(𝐾2 × 𝐾𝑛,𝑛) = 2𝑛2𝑛−2 (𝑛+ 1) (𝑛+ 2)2𝑛−2; 𝑛≥1. (10) Proof. Applying Lemma 1, we have 𝜏(𝐾2 × 𝐾𝑛,𝑛) = 2𝑛2𝑛−2 (𝑛+ 1) (𝑛+ 2)2𝑛−2; 𝑛≥1. (10) Proof. Applying Lemma 1, we have 𝜏(𝐾3 × 𝐾𝑚,𝑛) = 1 9(𝑚+ 𝑛)2 det (3 (𝑚+ 𝑛) 𝐼−𝐷+ 𝐴) = 1 9(𝑚+ 𝑛)2 9(𝑚+ 𝑛)2 × det ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( 𝑛+ 3 1 ⋅⋅⋅ 1 0 ⋅⋅⋅⋅⋅⋅ 0 0 1 ⋅⋅⋅ 1 1 d d ... ... d d ... 1 d d ... ... d d 1 ... d d ... ... d d 1 1 ⋅⋅⋅ 1 𝑛+ 3 0 ⋅⋅⋅⋅⋅⋅ 0 1 ⋅⋅⋅ 1 0 0 ⋅⋅⋅⋅⋅⋅ 0 𝑚+ 3 1 ⋅⋅⋅ 1 1 ⋅⋅⋅⋅⋅⋅ 1 ... d d ... 1 d d ... ... d d ... ... d d ... ... d d ... ... d d ... Theorem 5. For 𝑛, 𝑚≥1, we have 0 ⋅⋅⋅⋅⋅⋅ 0 1 ⋅⋅⋅ 1 𝑚+ 3 1 ⋅⋅⋅⋅⋅⋅ 1 0 1 ⋅⋅⋅ 1 1 ⋅⋅⋅⋅⋅⋅ 1 𝑛+ 3 1 ⋅⋅⋅ 1 1 d d ... ... d d ... 1 d d ... ... d d 1 ... d d ... ... d d 1 1 ⋅⋅⋅ 1 0 1 ⋅⋅⋅⋅⋅⋅ 1 1 ⋅⋅⋅ 1 𝑛+ 3 1 ⋅⋅⋅⋅⋅⋅ 1 0 1 ⋅⋅⋅ 1 0 ⋅⋅⋅⋅⋅⋅ 0 ... d d ... 1 d d ... ... d d ... ... d d ... ... d d 1 ... d d ... 1 ⋅⋅⋅⋅⋅⋅ 1 1 ⋅⋅⋅ 1 0 0 ⋅⋅⋅⋅⋅⋅ 0 0 1 ⋅⋅⋅ 1 1 ⋅⋅⋅⋅⋅⋅ 1 0 1 ⋅⋅⋅ 1 1 d d ... ... d d ... 1 d d ... ... d d 1 ... d d ... ... d d 1 1 ⋅⋅⋅ 1 0 1 ⋅⋅⋅⋅⋅⋅ 1 1 ⋅⋅⋅ 1 0 1 ⋅⋅⋅⋅⋅⋅ 1 0 1 ⋅⋅⋅ 1 1 ⋅⋅⋅⋅⋅⋅ 1 ... d d ... 1 d d ... ... d d ... ... d d ... ... d d 1 ... d d ... 1 ⋅⋅⋅⋅⋅⋅ 1 1 ⋅⋅⋅ 1 0 1 ⋅⋅⋅⋅⋅⋅ 1 9(𝑚+ 𝑛) × det ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( 𝑛+ 3 1 ⋅⋅⋅ 1 0 ⋅⋅⋅⋅⋅⋅ 0 0 1 ⋅⋅⋅ 1 1 d d ... ... d d ... 1 d d ... ... d d 1 ... d d ... ... d d 1 1 ⋅⋅⋅ 1 𝑛+ 3 0 ⋅⋅⋅⋅⋅⋅ 0 1 ⋅⋅⋅ 1 0 0 ⋅⋅⋅⋅⋅⋅ 0 𝑚+ 3 1 ⋅⋅⋅ 1 1 ⋅⋅⋅⋅⋅⋅ 1 ... d d ... 1 d d ... ... d d ... ... d d ... ... d d ... ... d d ... 0 ⋅⋅⋅⋅⋅⋅ 0 1 ⋅⋅⋅ 1 𝑚+ 3 1 ⋅⋅⋅⋅⋅⋅ 1 0 1 ⋅⋅⋅ 1 1 ⋅⋅⋅⋅⋅⋅ 1 𝑛+ 3 1 ⋅⋅⋅ 1 1 d d ... ... d d ... 1 d d ... ... d d 1 ... d d ... ... Theorem 5. For 𝑛, 𝑚≥1, we have d d 1 1 ⋅⋅⋅ 1 0 1 ⋅⋅⋅⋅⋅⋅ 1 1 ⋅⋅⋅ 1 𝑛+ 3 1 ⋅⋅⋅⋅⋅⋅ 1 0 1 ⋅⋅⋅ 1 0 ⋅⋅⋅⋅⋅⋅ 0 ... d d ... 1 d d ... ... d d ... ... d d ... ... d d 1 ... d d ... 1 ⋅⋅⋅⋅⋅⋅ 1 1 ⋅⋅⋅ 1 0 0 ⋅⋅⋅⋅⋅⋅ 0 0 1 ⋅⋅⋅ 1 1 ⋅⋅⋅⋅⋅⋅ 1 0 1 ⋅⋅⋅ 1 1 d d ... ... d d ... 1 d d ... ... d d 1 ... d d ... ... d d 1 1 ⋅⋅⋅ 1 0 1 ⋅⋅⋅⋅⋅⋅ 1 1 ⋅⋅⋅ 1 0 1 ⋅⋅⋅⋅⋅⋅ 1 0 1 ⋅⋅⋅ 1 1 ⋅⋅⋅⋅⋅⋅ 1 ... d d ... 1 d d ... ... d d ... ... d d ... ... d d 1 ... d d ... 1 ⋅⋅⋅⋅⋅⋅ 1 1 ⋅⋅⋅ 1 0 1 ⋅⋅⋅⋅⋅⋅ 1 6 Journal of Applied Mathematics 6 Journal of A 1 ⋅⋅⋅⋅⋅⋅ 1 0 1 ⋅⋅⋅ 1 1 ⋅⋅⋅⋅⋅⋅ 1 ... d d ... 1 d d ... ... d d ... ... d d ... ... d d ... ... d d ... 1 ⋅⋅⋅⋅⋅⋅ 1 1 ⋅⋅⋅ 1 0 1 ⋅⋅⋅⋅⋅⋅ 1 0 1 ⋅⋅⋅ 1 1 ⋅⋅⋅⋅⋅⋅ 1 0 1 ⋅⋅⋅ 1 1 d d ... ... d d ... 1 d d ... ... d d 1 ... d d ... ... d d 1 1 ⋅⋅⋅ 1 0 1 ⋅⋅⋅⋅⋅⋅ 1 1 ⋅⋅⋅ 1 0 0 ⋅⋅⋅⋅⋅⋅ 0 0 1 ⋅⋅⋅ 1 1 ⋅⋅⋅⋅⋅⋅ 1 ... d d ... 1 d d ... ... d d ... ... d d ... ... d d 1 ... d d ... 0 ⋅⋅⋅⋅⋅⋅ 0 1 ⋅⋅⋅ 1 0 1 ⋅⋅⋅⋅⋅⋅ 1 𝑚+ 3 1 ⋅⋅⋅ 1 1 ⋅⋅⋅⋅⋅⋅ 1 0 1 ⋅⋅⋅ 1 1 d d ... ... d d ... 1 d d ... ... d d 1 ... d d ... ... d d 1 1 ⋅⋅⋅ 1 𝑚+ 3 1 ⋅⋅⋅⋅⋅⋅ 1 1 ⋅⋅⋅ 1 0 1 ⋅⋅⋅⋅⋅⋅ 1 𝑛+ 3 1 ⋅⋅⋅ 1 0 ⋅⋅⋅⋅⋅⋅ 0 ... d d ... 1 d d ... ... d d ... ... d d ... ... d d 1 ... d d ... Theorem 5. For 𝑛, 𝑚≥1, we have 1 ⋅⋅⋅⋅⋅⋅ 1 1 ⋅⋅⋅ 1 𝑛+ 3 0 ⋅⋅⋅⋅⋅⋅ 0 0 1 ⋅⋅⋅ 1 0 ⋅⋅⋅⋅⋅⋅ 0 𝑚+ 3 1 ⋅⋅⋅ 1 1 d d ... ... d d ... 1 d d ... ... d d 1 ... d d ... ... d d 1 1 ⋅⋅⋅ 1 0 0 ⋅⋅⋅⋅⋅⋅ 0 1 ⋅⋅⋅ 1 𝑚+ 3 ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) = 1 9(𝑚+ 𝑛)2 det ( 𝐴𝐵𝐵 𝐵𝐴𝐵 𝐵𝐵𝐴 ) = 1 9(𝑚+ 𝑛)2 [det (𝐴−𝐵)]2 [det (𝐴+ 2𝐵)] = 1 9(𝑚+ 𝑛)2 ( ( ( ( ( ( ( ( ( ( det ( ( ( ( ( ( ( ( ( ( 𝑛+ 3 0 ⋅⋅⋅ 0 −1 ⋅⋅⋅⋅⋅⋅ −1 0 d d ... ... d d ... ... d d 0 ... d d ... 0 ⋅⋅⋅ 0 𝑛+ 3 −1 ⋅⋅⋅⋅⋅⋅ −1 −1 ⋅⋅⋅⋅⋅⋅ −1 𝑚+ 3 0 ⋅⋅⋅ 0 ... d d ... 0 d d ... ... d d ... ... d d 0 −1 ⋅⋅⋅⋅⋅⋅ −1 0 ⋅⋅⋅ 0 𝑚+ 3 ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) 2 × det ( ( ( ( ( ( ( ( ( ( 𝑛+ 3 3 ⋅⋅⋅ 3 2 ⋅⋅⋅⋅⋅⋅ 2 3 d d ... ... d d ... ... d d 3 ... d d ... 3 ⋅⋅⋅ 3 𝑛+ 3 2 ⋅⋅⋅⋅⋅⋅ 2 2 ⋅⋅⋅⋅⋅⋅ 2 𝑚+ 3 3 ⋅⋅⋅ 3 ... d d ... 3 d d ... ... d d ... ... d d 3 2 ⋅⋅⋅⋅⋅⋅ 2 3 ⋅⋅⋅ 3 𝑚+ 3 ) ) ) ) ) ) ) ) ) ) 1 9(𝑚+ 𝑛)2 ( ( ( ( ( ( ( ( ( ( det ( ( ( ( ( ( ( ( ( ( 𝑛+ 3 0 ⋅⋅⋅ 0 −1 ⋅⋅⋅⋅⋅⋅ −1 0 d d ... ... d d ... ... d d 0 ... d d ... 0 ⋅⋅⋅ 0 𝑛+ 3 −1 ⋅⋅⋅⋅⋅⋅ −1 −1 ⋅⋅⋅⋅⋅⋅ −1 𝑚+ 3 0 ⋅⋅⋅ 0 ... d d ... 0 d d ... ... Theorem 5. For 𝑛, 𝑚≥1, we have d d ... ... d d 0 −1 ⋅⋅⋅⋅⋅⋅ −1 0 ⋅⋅⋅ 0 𝑚+ 3 ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) 2 Journal of Applied Mathematics 7 Journal of Applied Mathematics 7 = 1 9(𝑚+ 𝑛)2 (det ( 𝐴 𝐵 𝐵𝑇𝐶)) 2 × det ( 𝐷𝐸 𝐸𝑇𝐹) = 1 9(𝑚+ 𝑛)2 (det ( 𝐴 𝐵 𝐵𝑇𝐶)) 2 × det ( 𝐷𝐸 𝐸𝑇𝐹) = 1 9(𝑚+ 𝑛)2 × (det 𝐴)2(det (𝐶−𝐵𝑇𝐴−1𝐵)) 2 × det 𝐷det (𝐹−𝐸𝑇𝐷−1𝐸) . (12) (12) Thus, 𝜏(𝐾3 × 𝐾𝑚,𝑛) = 1 9(𝑚+ 𝑛)2 (det ( 𝑛+ 3 0 ⋅⋅⋅ 0 0 d d ... ... d d 0 0 ⋅⋅⋅ 0 𝑛+ 3 ) 𝑚×𝑚 ) 2 × ( ( ( ( ( det ( ( ( ( 𝑛𝑚+ 3𝑛+ 2𝑚+ 9 𝑛+ 3 −𝑚 𝑛+ 3 ⋅⋅⋅ −𝑚 𝑛+ 3 −𝑚 𝑛+ 3 d d ... ... d d −𝑚 𝑛+ 3 −𝑚 𝑛+ 3 ⋅⋅⋅ −𝑚 𝑛+ 3 𝑛𝑚+ 3𝑛+ 2𝑚+ 9 𝑛+ 3 ) ) ) )𝑛×𝑛 ) ) ) ) ) 2 × det ( 𝑛+ 3 3 ⋅⋅⋅ 3 3 d d ... ... d d 3 3 ⋅⋅⋅ 3 𝑛+ 3 ) 𝑚×𝑚 × det ( ( ( ( ( ( 𝑛𝑚+ 3𝑛+ 3𝑚2 + 5𝑚 𝑛+ 3𝑚 3𝑛+ 5𝑚 𝑛+ 3𝑚 ⋅⋅⋅ 3𝑛+ 5𝑚 𝑛+ 3𝑚 3𝑛+ 5𝑚 𝑛+ 3𝑚 d d ... ... d d 3𝑛+ 5𝑚 𝑛+ 3𝑚 3𝑛+ 5𝑚 𝑛+ 3𝑚 ⋅⋅⋅ 3𝑛+ 5𝑚 𝑛+ 3𝑚 𝑛𝑚+ 3𝑛+ 3𝑚2 + 5𝑚 𝑛+ 3𝑚 ) ) ) ) ) )𝑛×𝑛 = 1 9(𝑚+ 𝑛)2 (𝑚+ 3)2𝑚× ( −𝑚 𝑛+ 3) 2𝑛 × ( ( ( det ( ( ( 𝑚𝑛+ 3𝑛+ 2𝑚+ 9 −𝑚 1 . . . 1 1 d d ... ... d d 1 1 . . . 1 𝑚𝑛+ 3𝑛+ 2𝑚+ 9 −𝑚 ) ) ) ) ) ) 2 × 3𝑚× det ( ( ( 𝑛+ 3 3 1 . . . 1 1 d d ... ... d d 1 1 . . . 1 𝑛+ 3 3 ) ) )𝑚×𝑚 × (3𝑛+ 5𝑚 𝑛+ 3𝑚) 𝑛 Thus, 𝜏(𝐾3 × 𝐾𝑚,𝑛) = 1 9(𝑚+ 𝑛)2 (det ( 𝑛+ 3 0 ⋅⋅⋅ 0 0 d d ... ... Theorem 5. For 𝑛, 𝑚≥1, we have (15) 𝜏(𝐾3 × 𝐾𝑛,𝑛) = 3𝑛2𝑛−2(2𝑛+ 3)2(𝑛+ 3)4𝑛−4; 𝑛≥1. (15) Theorem 5. For 𝑛, 𝑚≥1, we have d d 0 0 ⋅⋅⋅ 0 𝑛+ 3 ) 𝑚×𝑚 ) 2 × ( ( ( ( ( det ( ( ( ( 𝑛𝑚+ 3𝑛+ 2𝑚+ 9 𝑛+ 3 −𝑚 𝑛+ 3 ⋅⋅⋅ −𝑚 𝑛+ 3 −𝑚 𝑛+ 3 d d ... ... d d −𝑚 𝑛+ 3 −𝑚 𝑛+ 3 ⋅⋅⋅ −𝑚 𝑛+ 3 𝑛𝑚+ 3𝑛+ 2𝑚+ 9 𝑛+ 3 ) ) ) )𝑛×𝑛 ) ) ) ) ) 2 × det ( 𝑛+ 3 3 ⋅⋅⋅ 3 3 d d ... ... d d 3 3 ⋅⋅⋅ 3 𝑛+ 3 ) 𝑚×𝑚 Journal of Applied Mathematics 8 8 × det ( ( ( ( ( 𝑚𝑛+ 3𝑛+ 2𝑚2 + 5𝑚 3𝑛+ 5𝑚 1 . . . 1 1 d d ... ... d d 1 1 . . . 1 𝑚𝑛+ 3𝑛+ 2𝑚2 + 5𝑚 3𝑛+ 5𝑚 ) ) ) ) ) . (13) (13) × [(𝑛+ 3𝑚) × 𝑛𝑚−1 × 1 (𝑛+ 3𝑚)𝑛 × (6𝑛𝑚+ 3𝑛2 + 3𝑚2) ×(𝑛𝑚+ 3𝑚2) 𝑛−1] = 3𝑛𝑚−1𝑚𝑛−1(𝑚+ 3)2𝑛−2 (𝑛+ 3) 2𝑚−2(𝑛+ 𝑚+ 3)2. (14) × [(𝑛+ 3𝑚) × 𝑛𝑚−1 × 1 (𝑛+ 3𝑚)𝑛 × (6𝑛𝑚+ 3𝑛2 + 3𝑚2) ×(𝑛𝑚+ 3𝑚2) 𝑛−1] Using Lemma 2, we have 𝜏(𝐾3 × 𝐾𝑚,𝑛) = 1 9(𝑚+ 𝑛)2 × (𝑛+ 3)2𝑚× ( −𝑚 𝑛+ 3) 2𝑛 × [−𝑛𝑚+ 3𝑛+ 2𝑚+ 9 𝑚 + 𝑛−1] 2 × [−𝑛𝑚+ 3𝑛+ 2𝑚+ 9 𝑚 −1] 2𝑛−2 × 3𝑚(𝑛+ 3 3 + 𝑚−1) × (𝑛+ 3 3 −1) 𝑚−1 × (3𝑛+ 5𝑚 𝑛+ 3𝑚) 𝑛 × [𝑛𝑚+ 3𝑛+ 3𝑚2 + 5𝑚 3𝑛+ 5𝑚 + 𝑛−1] × [𝑛𝑚+ 3𝑛+ 3𝑚2 + 5𝑚 3𝑛+ 5𝑚 −1] 𝑛−1 = 1 9(𝑚+ 𝑛)2 (𝑛+ 3)2𝑚 × [ 1 (𝑛+ 3)2𝑛× (3𝑛+ 3𝑚+ 9)2 × (𝑛𝑚+ 3𝑛+ 3𝑚+ 9)2𝑛−2] 𝜏(𝐾3 × 𝐾𝑚,𝑛) = 1 9(𝑚+ 𝑛)2 × (𝑛+ 3)2𝑚× ( −𝑚 𝑛+ 3) 2𝑛 × [−𝑛𝑚+ 3𝑛+ 2𝑚+ 9 𝑚 + 𝑛−1] 2 × [−𝑛𝑚+ 3𝑛+ 2𝑚+ 9 𝑚 −1] 2𝑛−2 × 3𝑚(𝑛+ 3 3 + 𝑚−1) × (𝑛+ 3 3 −1) 𝑚−1 × (3𝑛+ 5𝑚 𝑛+ 3𝑚) 𝑛 × [𝑛𝑚+ 3𝑛+ 3𝑚2 + 5𝑚 3𝑛+ 5𝑚 + 𝑛−1] × [𝑛𝑚+ 3𝑛+ 3𝑚2 + 5𝑚 3𝑛+ 5𝑚 −1] 𝑛−1 = 1 9(𝑚+ 𝑛)2 (𝑛+ 3)2𝑚 × [ 1 (𝑛+ 3)2𝑛× (3𝑛+ 3𝑚+ 9)2 × (𝑛𝑚+ 3𝑛+ 3𝑚+ 9)2𝑛−2] = 3𝑛𝑚−1𝑚𝑛−1(𝑚+ 3)2𝑛−2 (𝑛+ 3) 2𝑚−2(𝑛+ 𝑚+ 3)2. (14) In particular, 𝜏(𝐾3 × 𝐾𝑛,𝑛) = 3𝑛2𝑛−2(2𝑛+ 3)2(𝑛+ 3)4𝑛−4; 𝑛≥1. 3. Number of Spanning Trees of Normal Product of Graphs d d 1 0 ⋅⋅⋅⋅⋅⋅ 0 1 ⋅⋅⋅ 1 0 0 ⋅⋅⋅⋅⋅⋅ 0 1 ⋅⋅⋅ 1 2𝑚+ 2 ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) = 1 4(𝑚+ 𝑛)2 det ( ( ( ( ( ( ( ( ( ( 2𝑛+ 2 2 ⋅⋅⋅ 2 0 ⋅⋅⋅⋅⋅⋅ 0 2 d d ... ... d d ... ... d d 2 ... d d ... 2 ⋅⋅⋅ 2 2𝑛+ 2 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 2𝑚+ 2 2 ⋅⋅⋅ 2 ... d d ... 2 d d ... ... d d ... ... d d 2 0 ⋅⋅⋅⋅⋅⋅ 0 2 ⋅⋅⋅ 2 2𝑚+ 2 ) ) ) ) ) ) ) ) ) ) × det ( ( ( ( ( ( ( ( ( ( 2𝑛+ 2 0 ⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 0 d d ... ... d d ... ... d d 0 ... d d ... 0 ⋅⋅⋅ 0 2𝑛+ 2 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 2𝑚+ 2 0 ⋅⋅⋅ 0 ... d d ... 0 d d ... ... d d ... ... d d 0 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅ 0 2𝑚+ 2 ) ) ) ) ) ) ) ) ) ) = 1 4(𝑚+ 𝑛)2 det ( 2𝑛+ 2 2 ⋅⋅⋅ 2 2 d d ... ... d d 2 2 ⋅⋅⋅ 2 2𝑛+ 2 ) 𝑚×𝑚 × det ( 2𝑚+ 2 2 ⋅⋅⋅ 2 2 d d ... ... d d 2 2 ⋅⋅⋅ 2 2𝑚+ 2 ) 𝑛×𝑛 × det ( 2𝑛+ 2 0 ⋅⋅⋅ 0 0 d d ... ... d d 0 0 ⋅⋅⋅ 0 2𝑛+ 2 ) 𝑚×𝑚 × det ( 2𝑚+ 2 0 ⋅⋅⋅ 0 0 d d ... ... d d 0 0 ⋅⋅⋅ 0 2𝑚+ 2 ) 𝑛×𝑛 Journal of Applied Mathematics × det ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( 2𝑛+ 2 1 ⋅⋅⋅ 1 0 ⋅⋅⋅⋅⋅⋅ 0 0 1 ⋅⋅⋅ 1 0 ⋅⋅⋅⋅⋅⋅ 0 1 d d ... ... d d ... 1 d d ... ... d d ... ... d d 1 ... d d ... ... d d 1 ... d d ... 3. Number of Spanning Trees of Normal Product of Graphs 1 ⋅⋅⋅ 1 2𝑛+ 2 0 ⋅⋅⋅⋅⋅⋅ 0 1 ⋅⋅⋅ 1 0 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 2𝑚+ 2 1 ⋅⋅⋅ 1 0 ⋅⋅⋅⋅⋅⋅ 0 0 1 ⋅⋅⋅ 1 ... d d 1 1 d d ... ... d d ... 1 d d ... ... d d ... ... d d 1 ... d d ... ... d d 1 0 ⋅⋅⋅⋅⋅⋅ 0 1 ⋅⋅⋅ 1 2𝑚+ 2 0 ⋅⋅⋅⋅⋅⋅ 0 1 ⋅⋅⋅ 1 0 0 1 ⋅⋅⋅ 1 0 ⋅⋅⋅⋅⋅⋅ 0 2𝑛+ 2 1 ⋅⋅⋅ 1 0 ⋅⋅⋅⋅⋅⋅ 0 1 d d ... ... d d ... 1 d d ... ... d d ... ... d d 1 ... d d ... ... d d 1 ... d d ... 1 ⋅⋅⋅ 1 0 0 ⋅⋅⋅⋅⋅⋅ 0 1 ⋅⋅⋅ 1 2𝑛+ 2 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 0 1 ⋅⋅⋅ 1 0 ⋅⋅⋅⋅⋅⋅ 0 2𝑚+ 2 1 ⋅⋅⋅ 1 ... d d ... 1 d d ... ... d d ... 1 d d ... ... d d ... ... d d 1 ... d d ... ... d d 1 0 ⋅⋅⋅⋅⋅⋅ 0 1 ⋅⋅⋅ 1 0 0 ⋅⋅⋅⋅⋅⋅ 0 1 ⋅⋅⋅ 1 2𝑚+ 2 ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) = 1 4(𝑚+ 𝑛)2 det ( ( ( ( ( ( ( ( ( ( 2𝑛+ 2 2 ⋅⋅⋅ 2 0 ⋅⋅⋅⋅⋅⋅ 0 2 d d ... ... d d ... ... d d 2 ... d d ... 2 ⋅⋅⋅ 2 2𝑛+ 2 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 2𝑚+ 2 2 ⋅⋅⋅ 2 ... d d ... 2 d d ... ... d d ... ... d d 2 0 ⋅⋅⋅⋅⋅⋅ 0 2 ⋅⋅⋅ 2 2𝑚+ 2 ) ) ) ) ) ) ) ) ) ) × det ( ( ( ( ( ( ( ( ( ( 2𝑛+ 2 0 ⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 0 d d ... ... d d ... ... d d 0 ... d d ... 0 ⋅⋅⋅ 0 2𝑛+ 2 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 2𝑚+ 2 0 ⋅⋅⋅ 0 ... d d ... 0 d d ... ... d d ... ... 3. Number of Spanning Trees of Normal Product of Graphs The normal product, or the strong product, 𝐺1 ∘𝐺2, is the simple graph with 𝑉(𝐺1 ∘𝐺2) = 𝑉1 × 𝑉2, where (𝑢1, 𝑢2) and (V1, V2) are adjacent in 𝐺1 ∘𝐺2 if and only if either 𝑢1 = V1 and 𝑢2 is adjacent to V2, 𝑢1 is adjacent to V1 and 𝑢2 = V2, or 𝑢1 is adjacent to V1 and 𝑢2 is adjacent to V2 [13]. Theorem 7. For 𝑛, 𝑚≥1, we have 𝜏(𝐾2 ∘𝐾𝑚,𝑛) = 22𝑚+2𝑛−2 × 𝑛𝑚−1 × 𝑚𝑛−1 × (𝑛+ 1)𝑚× (𝑚+ 1)𝑛. (16) (16) × 𝑚𝑛−1 × (𝑛+ 1)𝑚× (𝑚+ 1)𝑛. (1 Proof. Applying Lemma 1, we have 𝜏(𝐾2 ∘𝐾𝑚,𝑛) = 1 4(𝑚+ 𝑛)2 det (2 (𝑚+ 𝑛) 𝐼−𝐷+ 𝐴) = 1 4(𝑚+ 𝑛)2 Journal of Applied Mathematics 9 Journal of Applied Mathematics × det ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( 2𝑛+ 2 1 ⋅⋅⋅ 1 0 ⋅⋅⋅⋅⋅⋅ 0 0 1 ⋅⋅⋅ 1 0 ⋅⋅⋅⋅⋅⋅ 0 1 d d ... ... d d ... 1 d d ... ... d d ... ... d d 1 ... d d ... ... d d 1 ... d d ... 1 ⋅⋅⋅ 1 2𝑛+ 2 0 ⋅⋅⋅⋅⋅⋅ 0 1 ⋅⋅⋅ 1 0 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 2𝑚+ 2 1 ⋅⋅⋅ 1 0 ⋅⋅⋅⋅⋅⋅ 0 0 1 ⋅⋅⋅ 1 ... d d 1 1 d d ... ... d d ... 1 d d ... ... d d ... ... d d 1 ... d d ... ... d d 1 0 ⋅⋅⋅⋅⋅⋅ 0 1 ⋅⋅⋅ 1 2𝑚+ 2 0 ⋅⋅⋅⋅⋅⋅ 0 1 ⋅⋅⋅ 1 0 0 1 ⋅⋅⋅ 1 0 ⋅⋅⋅⋅⋅⋅ 0 2𝑛+ 2 1 ⋅⋅⋅ 1 0 ⋅⋅⋅⋅⋅⋅ 0 1 d d ... ... d d ... 1 d d ... ... d d ... ... d d 1 ... d d ... ... d d 1 ... d d ... 1 ⋅⋅⋅ 1 0 0 ⋅⋅⋅⋅⋅⋅ 0 1 ⋅⋅⋅ 1 2𝑛+ 2 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 0 1 ⋅⋅⋅ 1 0 ⋅⋅⋅⋅⋅⋅ 0 2𝑚+ 2 1 ⋅⋅⋅ 1 ... d d ... 1 d d ... ... d d ... 1 d d ... ... d d ... ... d d 1 ... d d ... ... 3. Number of Spanning Trees of Normal Product of Graphs d d 0 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅ 0 2𝑚+ 2 ) ) ) ) ) ) ) ) ) ) = 1 4(𝑚+ 𝑛)2 det ( 2𝑛+ 2 2 ⋅⋅⋅ 2 2 d d ... ... d d 2 2 ⋅⋅⋅ 2 2𝑛+ 2 ) 𝑚×𝑚 × det ( 2𝑚+ 2 2 ⋅⋅⋅ 2 2 d d ... ... d d 2 2 ⋅⋅⋅ 2 2𝑚+ 2 ) 𝑛×𝑛 × det ( 2𝑛+ 2 0 ⋅⋅⋅ 0 0 d d ... ... d d 0 0 ⋅⋅⋅ 0 2𝑛+ 2 ) 𝑚×𝑚 × det ( 2𝑚+ 2 0 ⋅⋅⋅ 0 0 d d ... ... d d 0 0 ⋅⋅⋅ 0 2𝑚+ 2 ) 𝑛×𝑛 × det ( ( ( ( ( ( ( ( ( ( 2𝑛+ 2 0 ⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 0 d d ... ... d d ... ... d d 0 ... d d ... 0 ⋅⋅⋅ 0 2𝑛+ 2 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 2𝑚+ 2 0 ⋅⋅⋅ 0 ... d d ... 0 d d ... ... d d ... ... d d 0 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅ 0 2𝑚+ 2 ) ) ) ) ) ) ) ) ) ) = 1 4(𝑚+ 𝑛)2 det ( 2𝑛+ 2 2 ⋅⋅⋅ 2 2 d d ... ... d d 2 2 ⋅⋅⋅ 2 2𝑛+ 2 ) 𝑚×𝑚 × det ( 2𝑚+ 2 2 ⋅⋅⋅ 2 2 d d ... ... d d 2 2 ⋅⋅⋅ 2 2𝑚+ 2 ) 𝑛×𝑛 Journal of Applied Mathematics 10 = 1 4(𝑚+ 𝑛)2 × 2𝑚(𝑛+ 𝑚) 𝑛𝑚−1 × 2𝑛(𝑛+ 𝑚) 𝑚𝑛−1 × 2𝑚(𝑛+ 1)𝑚× 2𝑛(𝑚+ 1)𝑛 = 22𝑚+2𝑛−2 × 𝑛𝑚−1 × 𝑚𝑛−1 × (𝑛+ 1)𝑚× (𝑚+ 1)𝑛. = 1 4(𝑚+ 𝑛)2 × 2𝑚(𝑛+ 𝑚) 𝑛𝑚−1 × 2𝑛(𝑛+ 𝑚) 𝑚𝑛−1 × 2𝑚(𝑛+ 1)𝑚× 2𝑛(𝑚+ 1)𝑛 (17) In particular, 𝜏(𝐾2 ∘𝐾𝑛,𝑛) = 24𝑛−2 × 𝑛2𝑛−2 × (𝑛+ 1)2𝑛; 𝑛≥1. (18) Theorem 8. For 𝑚, 𝑛≥1, we have 𝜏(𝐾3 ∘𝐾𝑚,𝑛) = 33𝑚+3𝑛−2 × 𝑛𝑚−1 × 𝑚𝑛−1 × (𝑛+ 1)2𝑚× (𝑚+ 1)2𝑛. (19) Proof. Applying Lemma 1, we have 𝜏(𝐾3 ∘𝐾𝑚,𝑛) = 33𝑚+3𝑛−2 × 𝑛𝑚−1 × 𝑚𝑛−1 In particular, (19) 𝑛2𝑛−2 × (𝑛+ 1)2𝑛; 𝑛≥1. (18) × (𝑛+ 1)2𝑚× (𝑚+ 1)2𝑛. (19) 𝐾2 ∘𝐾𝑛,𝑛) = 24𝑛−2 × 𝑛2𝑛−2 × (𝑛+ 1)2𝑛; 𝑛≥1. (18) × (𝑛+ 1)2𝑚× (𝑚 Theorem 8. For 𝑚, 𝑛≥1, we have Theorem 8. 3. Number of Spanning Trees of Normal Product of Graphs For 𝑚, 𝑛≥1, we have 𝜏(𝐾3 ∘𝐾𝑚,𝑛) = 1 9(𝑚+ 𝑛)2 det (3 (𝑚+ 𝑛) 𝐼−𝐷+ 𝐴) = 1 9(𝑚+ 𝑛)2 𝜏(𝐾3 ∘𝐾𝑚,𝑛) = 1 9(𝑚+ 𝑛)2 det (3 (𝑚+ 𝑛) 𝐼−𝐷+ 𝐴) = 1 9(𝑚+ 𝑛)2 × det ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( 3𝑛+ 3 1 ⋅⋅⋅ 1 0 ⋅⋅⋅⋅⋅⋅ 0 0 1 ⋅⋅⋅ 1 1 d d ... ... d d ... 1 d d ... ... d d 1 ... d d ... ... d d 1 1 ⋅⋅⋅ 1 3𝑛+ 3 0 ⋅⋅⋅⋅⋅⋅ 0 1 ⋅⋅⋅ 1 0 0 ⋅⋅⋅⋅⋅⋅ 0 3𝑚+ 3 1 ⋅⋅⋅ 1 0 ⋅⋅⋅⋅⋅⋅ 0 ... d d ... 1 d d ... ... d d ... ... d d ... ... d d ... ... d d ... 0 ⋅⋅⋅⋅⋅⋅ 0 1 ⋅⋅⋅ 1 3𝑚+ 3 0 ⋅⋅⋅⋅⋅⋅ 0 0 1 ⋅⋅⋅ 1 0 ⋅⋅⋅⋅⋅⋅ 0 3𝑛+ 3 1 ⋅⋅⋅ 1 1 d d ... ... d d ... 1 d d ... ... d d 1 ... d d ... ... d d 1 1 ⋅⋅⋅ 1 0 0 ⋅⋅⋅⋅⋅⋅ 0 1 ⋅⋅⋅ 1 3𝑛+ 3 0 ⋅⋅⋅⋅⋅⋅ 0 0 1 ⋅⋅⋅ 1 0 ⋅⋅⋅⋅⋅⋅ 0 ... d d ... 1 d d ... ... d d ... ... d d ... ... d d 1 ... d d ... 0 ⋅⋅⋅⋅⋅⋅ 0 1 ⋅⋅⋅ 1 0 0 ⋅⋅⋅⋅⋅⋅ 0 0 1 ⋅⋅⋅ 1 0 ⋅⋅⋅⋅⋅⋅ 0 0 1 ⋅⋅⋅ 1 1 d d ... ... d d ... 1 d d ... ... d d 1 ... d d ... ... d d 1 1 ⋅⋅⋅ 1 0 0 ⋅⋅⋅⋅⋅⋅ 0 1 ⋅⋅⋅ 1 0 0 ⋅⋅⋅⋅⋅⋅ 0 0 1 ⋅⋅⋅ 1 0 ⋅⋅⋅⋅⋅⋅ 0 ... d d ... 1 d d ... ... d d ... ... d d ... ... d d 1 ... d d ... 0 ⋅⋅⋅⋅⋅⋅ 0 1 ⋅⋅⋅ 1 0 0 ⋅⋅⋅⋅⋅⋅ 0 11 Journal of Applied Mathematics 11 pplied Mathematics ... d d ... 1 d d ... ... d d ... ... d d ... ... d d ... ... d d ... 3. Number of Spanning Trees of Normal Product of Graphs 0 ⋅⋅⋅⋅⋅⋅ 0 1 ⋅⋅⋅ 1 0 0 ⋅⋅⋅⋅⋅⋅ 0 0 1 ⋅⋅⋅ 1 0 ⋅⋅⋅⋅⋅⋅ 0 0 1 ⋅⋅⋅ 1 1 d d ... ... d d ... 1 d d ... ... d d 1 ... d d ... ... d d 1 1 ⋅⋅⋅ 1 0 0 ⋅⋅⋅⋅⋅⋅ 0 1 ⋅⋅⋅ 1 0 0 ⋅⋅⋅⋅⋅⋅ 0 0 1 ⋅⋅⋅ 1 0 ⋅⋅⋅⋅⋅⋅ 0 ... d d ... 1 d d ... ... d d ... ... d d ... ... d d 1 ... d d ... 0 ⋅⋅⋅⋅⋅⋅ 0 1 ⋅⋅⋅ 1 0 0 ⋅⋅⋅⋅⋅⋅ 0 3𝑚+ 3 1 ⋅⋅⋅ 1 0 ⋅⋅⋅⋅⋅⋅ 0 0 1 ⋅⋅⋅ 1 1 d d ... ... d d ... 1 d d ... ... d d 1 ... d d ... ... d d 1 1 ⋅⋅⋅ 1 3𝑚+ 3 0 ⋅⋅⋅⋅⋅⋅ 0 1 ⋅⋅⋅ 1 0 0 ⋅⋅⋅⋅⋅⋅ 0 3𝑛+ 3 1 ⋅⋅⋅ 1 0 ⋅⋅⋅⋅⋅⋅ 0 ... d d ... 1 d d ... ... d d ... ... d d ... ... d d 1 ... d d ... 0 ⋅⋅⋅⋅⋅⋅ 0 1 ⋅⋅⋅ 1 3𝑛+ 3 0 ⋅⋅⋅⋅⋅⋅ 0 0 1 ⋅⋅⋅ 1 0 ⋅⋅⋅⋅⋅⋅ 0 3𝑚+ 3 1 ⋅⋅⋅ 1 1 d d ... ... d d ... 1 d d ... ... d d 1 ... d d ... ... d d 1 1 ⋅⋅⋅ 1 0 0 ⋅⋅⋅⋅⋅⋅ 0 1 ⋅⋅⋅ 1 3𝑚+ 3 ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) = 1 9(𝑚+ 𝑛)2 det ( 𝐴𝐵𝐵 𝐵𝐴𝐵 𝐵𝐵𝐴 ) = 1 9(𝑚+ 𝑛)2 [det (𝐴−𝐵)]2 [det (𝐴+ 2𝐵)] = 1 9(𝑚+ 𝑛)2 ( ( ( ( ( ( ( ( ( ( det ( ( ( ( ( ( ( ( ( ( 3𝑛+ 3 0 ⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 0 d d ... ... d d ... ... d d 0 ... d d ... 0 ⋅⋅⋅ 0 3𝑛+ 3 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 3𝑚+ 3 0 ⋅⋅⋅ 0 ... d d ... 0 d d ... ... d d ... ... 3. Number of Spanning Trees of Normal Product of Graphs d d 0 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅ 0 3𝑚+ 3 ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) 2 × det ( ( ( ( ( ( ( ( ( ( 3𝑛+ 3 3 ⋅⋅⋅ 3 0 ⋅⋅⋅⋅⋅⋅ 0 3 d d ... ... d d ... ... d d 3 ... d d ... 3 ⋅⋅⋅ 3 3𝑛+ 3 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 3𝑚+ 3 3 ⋅⋅⋅ 3 ... d d ... 3 d d ... ... d d ... ... d d 3 0 ⋅⋅⋅⋅⋅⋅ 0 3 ⋅⋅⋅ 3 3𝑚+ 3 ) ) ) ) ) ) ) ) ) ) Journal of Applied Mathematics 12 12 2 Journal of Applied Mathematics = 1 9(𝑚+ 𝑛)2 (det ( 3𝑛+ 3 0 ⋅⋅⋅ 0 0 d d ... ... d d 0 0 ⋅⋅⋅ 0 3𝑛+ 3 ) 𝑚×𝑚 ) 2 × (det ( 3𝑚+ 3 0 ⋅⋅⋅ 0 0 d d ... ... d d 0 0 ⋅⋅⋅ 0 3𝑚+ 3 ) 𝑛×𝑛 ) 2 × det ( 3𝑛+ 3 3 ⋅⋅⋅ 3 3 d d ... ... d d 3 3 ⋅⋅⋅ 3 3𝑛+ 3 ) 𝑚×𝑚 × det ( 3𝑚+ 3 3 ⋅⋅⋅ 3 3 d d ... ... d d 3 3 ⋅⋅⋅ 3 3𝑚+ 3 ) 𝑛×𝑛 . (20) = 1 9(𝑚+ 𝑛)2 (det ( 3𝑛+ 3 0 ⋅⋅⋅ 0 0 d d ... ... d d 0 0 ⋅⋅⋅ 0 3𝑛+ 3 ) 𝑚×𝑚 ) 2 × (det ( 3𝑚+ 3 0 ⋅⋅⋅ 0 0 d d ... ... d d 0 0 ⋅⋅⋅ 0 3𝑚+ 3 ) 𝑛×𝑛 ) 2 × det ( 3𝑛+ 3 3 ⋅⋅⋅ 3 3 d d ... ... d d 3 3 ⋅⋅⋅ 3 3𝑛+ 3 ) 𝑚×𝑚 × det ( 3𝑚+ 3 3 ⋅⋅⋅ 3 3 d d ... ... d d 3 3 ⋅⋅⋅ 3 3𝑚+ 3 ) 𝑛×𝑛 . (20) (20) Using Lemma 2, we have Using Lemma 2, we have 𝜏(𝐾3 ∘𝐾𝑚,𝑛) = 1 9(𝑚+ 𝑛)2 × (3𝑛+ 3)2𝑚× (3𝑚+ 3)2𝑛 × (3𝑚× (𝑛+ 𝑚) × 𝑛𝑚−1) × (3𝑛× (𝑛+ 𝑚) × 𝑚𝑛−1) = 33𝑚+3𝑛−2 × 𝑛𝑚−1 × 𝑚𝑛−1 × (𝑛+ 1)2𝑚× (𝑚+ 1)2𝑛. 𝜏(𝐾3 ∘𝐾𝑚,𝑛) = 1 9(𝑚+ 𝑛)2 × (3𝑛+ 3)2𝑚× (3𝑚+ 3)2𝑛 4. Number of Spanning Trees of Composition Product of Graphs × (3𝑚× (𝑛+ 𝑚) × 𝑛𝑚−1) × (3𝑛× (𝑛+ 𝑚) × 𝑚𝑛−1) = 33𝑚+3𝑛−2 × 𝑛𝑚−1 × 𝑚𝑛−1 × (𝑛+ 1)2𝑚× (𝑚+ 1)2𝑛. × (3𝑚× (𝑛+ 𝑚) × 𝑛𝑚−1) The composition, or lexicographic product, 𝐺1[𝐺2], is the simple graph with 𝑉1 × 𝑉2 as the vertex set in which the vertices (𝑢1, 𝑢2) and (V1, V2) are adjacent if either 𝑢1 is adjacent to V1 or 𝑢1 = V1 and 𝑢2 is adjacent to V2 in 𝐺2 [13]. (21) (21) Theorem 9. For 𝑛, 𝑚≥1, we have 𝜏(𝐾2 [𝐾𝑚,𝑛]) = 4(𝑚+ 𝑛)2 × (𝑚+ 2𝑛)2𝑚−2(𝑛+ 2𝑚)2𝑛−2. (23) Theorem 9. For 𝑛, 𝑚≥1, we have 𝜏(𝐾2 [𝐾𝑚,𝑛]) = 4(𝑚+ 𝑛)2 (23) × (𝑚+ 2𝑛)2𝑚−2(𝑛+ 2𝑚)2𝑛−2. (23) × (𝑚+ 2𝑛)2𝑚−2(𝑛+ 2𝑚)2𝑛−2. (23 In paricular, In paricular, 𝜏(𝐾3 ∘𝐾𝑛,𝑛) = 36𝑛−2 × 𝑛2𝑛−2 × (𝑛+ 1)4𝑛; 𝑛≥1. (22) Proof. Applying Lemma 1, we have Proof. Applying Lemma 1, we have 𝜏(𝐾2 [𝐾𝑚,𝑛]) = 1 4(𝑚+ 𝑛)2 det (2 (𝑚+ 𝑛) 𝐼−𝐷+ 𝐴) = 1 4(𝑚+ 𝑛)2 𝜏(𝐾2 [𝐾𝑚,𝑛]) = 1 4(𝑚+ 𝑛)2 det (2 (𝑚+ 𝑛) 𝐼−𝐷+ 𝐴) = 1 4(𝑚+ 𝑛)2 𝜏(𝐾2 [𝐾𝑚,𝑛]) = 1 4(𝑚+ 𝑛)2 det (2 (𝑚+ 𝑛) 𝐼−𝐷+ 𝐴) = 1 4(𝑚+ 𝑛)2 13 Journal of Applied Mathematics 13 × det ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( 𝑚+ 2𝑛+ 1 1 ⋅⋅⋅ 1 0 ⋅⋅⋅⋅⋅⋅ 0 1 d d ... ... d d ... ... d d 1 ... d d ... 1 ⋅⋅⋅ 1 𝑚+ 2𝑛+ 1 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 𝑛+ 2𝑚+ 1 1 ⋅⋅⋅ 1 ... d d ... 1 d d ... ... d d ... ... d d 1 0 ⋅⋅⋅⋅⋅⋅ 0 1 ⋅⋅⋅ 1 𝑛+ 2𝑚+ 1 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 ... d d ... ... d d ... ... d d ... ... d d ... 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 ... d d ... ... d d ... ... d d ... ... d d ... 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 ... d d ... ... d d ... ... d d ... ... d d ... 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 ... 4. Number of Spanning Trees of Composition Product of Graphs 0 ⋅⋅⋅⋅⋅⋅ 0 1 ⋅⋅⋅ 1 3𝑚+ 2𝑛+ 1 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 3𝑛+ 2𝑚+ 1 1 ⋅⋅⋅ 1 ... d d ... ... d d ... 1 d d ... ... d d ... ... d d ... ... d d 1 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 1 ⋅⋅⋅ 1 3𝑛+ 2𝑚+ 1 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 ... d d ... ... d d ... ... d d ... ... d d ... ... d d ... ... d d ... 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 ... d d ... ... d d ... ... d d ... ... d d ... ... d d ... ... d d ... 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 ... d d ... ... d d ... ... d d ... ... d d ... ... d d ... ... d d ... 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 rticular, 𝜏(𝐾2 [𝐾𝑛,𝑛]) = 16 × 34𝑛−4 × 𝑛4𝑛−4; 𝑛≥1. (25) Theorem 10. For 𝑚, 𝑛≥1, we have 𝜏(𝐾3 [𝐾𝑚,𝑛]) = 34(𝑚+ 𝑛)4(3𝑚+ 2𝑛)3𝑛−3(3𝑛+ 2𝑚)3𝑚−3. (26) Proof. Applying Lemma 1, we have particular, 𝜏(𝐾2 [𝐾𝑛,𝑛]) = 16 × 34𝑛−4 × 𝑛4𝑛−4; 𝑛≥1. (25) Theorem 10. For 𝑚, 𝑛≥1, we have 𝜏(𝐾3 [𝐾𝑚,𝑛]) = 34(𝑚+ 𝑛)4(3𝑚+ 2𝑛)3𝑛−3(3𝑛+ 2𝑚)3𝑚−3. (26) In particular, × 34𝑛−4 × 𝑛4𝑛−4; 𝑛≥1. (25) 𝜏(𝐾3 [𝐾𝑚,𝑛]) = 34(𝑚+ 𝑛)4(3𝑚+ 2𝑛)3𝑛−3(3𝑛+ 2𝑚)3𝑚−3. (26) (26) Proof. Applying Lemma 1, we have = 9(𝑚+ 𝑛)2 × det ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( 3𝑛+ 2𝑚+ 1 1 ⋅⋅⋅ 1 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 1 d d ... ... d d ... ... d d ... ... d d 1 ... d d ... ... d d ... 1 ⋅⋅⋅ 1 3𝑛+ 2𝑚+ 1 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 3𝑚+ 2𝑛+ 1 1 ⋅⋅⋅ 1 0 ⋅⋅⋅⋅⋅⋅ 0 ... d d ... 1 d d ... ... 4. Number of Spanning Trees of Composition Product of Graphs d d ... ... d d ... ... d d ... ... d d ... 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 𝑚+ 2𝑛+ 1 1 ⋅⋅⋅ 1 0 ⋅⋅⋅⋅⋅⋅ 0 1 d d ... ... d d ... ... d d 1 ... d d ... 1 ⋅⋅⋅ 1 𝑚+ 2𝑛+ 1 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 𝑛+ 2𝑚+ 1 1 ⋅⋅⋅ 1 ... d d ... 1 d d ... ... d d ... ... d d 1 0 ⋅⋅⋅⋅⋅⋅ 0 1 ⋅⋅⋅ 1 𝑛+ 2𝑚+ 1 ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) = 1 4(𝑚+ 𝑛)2 (det ( 𝑚+ 2𝑛+ 1 1 ⋅⋅⋅ 1 1 d d ... ... d d 1 1 ⋅⋅⋅ 1 𝑚+ 2𝑛+ 1 ) 𝑚×𝑚 ) 2 × (det ( 𝑛+ 2𝑚+ 1 1 ⋅⋅⋅ 1 1 d d ... ... d d 1 1 ⋅⋅⋅ 1 𝑛+ 2𝑚+ 1 ) 𝑛×𝑛 ) 2 14 Journal of Applied Mathematics = 1 4(𝑚+ 𝑛)2 (2𝑛+ 2𝑚)2(𝑚+ 2𝑛)2𝑚−2 × (2𝑛+ 2𝑚)2(𝑛+ 2𝑚)2𝑛−2 = 4(𝑚+ 𝑛)2(𝑚+ 2𝑛)2𝑚−2(𝑛+ 2𝑚)2𝑛−2. (24) Journal of Applied Mathematics 14 (24) In particular, 𝜏(𝐾2 [𝐾𝑛,𝑛]) = 16 × 34𝑛−4 × 𝑛4𝑛−4; 𝑛≥1. (25) Theorem 10. For 𝑚, 𝑛≥1, we have 𝜏(𝐾3 [𝐾𝑚,𝑛]) = 34(𝑚+ 𝑛)4(3𝑚+ 2𝑛)3𝑛−3(3𝑛+ 2𝑚)3 Proof. Applying Lemma 1, we have 𝜏(𝐾3 [𝐾𝑚,𝑛]) = 1 9(𝑚+ 𝑛)2 det (3 (𝑚+ 𝑛) 𝐼−𝐷+ 𝐴) = 1 9(𝑚+ 𝑛)2 × det ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( 3𝑛+ 2𝑚+ 1 1 ⋅⋅⋅ 1 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 1 d d ... ... d d ... ... d d ... ... d d 1 ... d d ... ... d d ... 1 ⋅⋅⋅ 1 3𝑛+ 2𝑚+ 1 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 3𝑚+ 2𝑛+ 1 1 ⋅⋅⋅ 1 0 ⋅⋅⋅⋅⋅⋅ 0 ... d d ... 1 d d ... ... d d ... ... d d ... ... d d ... ... d d ... 4. Number of Spanning Trees of Composition Product of Graphs d d ... 1 d d ... ... d d ... ... d d ... ... d d 1 ... d d ... 0 ⋅⋅⋅⋅⋅⋅ 0 1 ⋅⋅⋅ 1 3𝑛+ 2𝑚+ 1 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 3𝑚+ 2𝑛+ 1 1 ⋅⋅⋅ 1 ... d d ... ... d d ... 1 d d ... ... d d ... ... d d ... ... d d 1 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 1 ⋅⋅⋅ 1 3𝑚+ 2𝑛+ 1 ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) = 1 9(𝑚+ 𝑛)2 ( ( ( ( ( ( ( ( ( ( det ( ( ( ( ( ( ( ( ( ( 3𝑛+ 2𝑚+ 1 1 ⋅⋅⋅ 1 0 ⋅⋅⋅⋅⋅⋅ 0 1 d d ... ... d d ... ... d d 1 ... d d ... 1 ⋅⋅⋅ 1 3𝑛+ 2𝑚+ 1 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 3𝑚+ 2𝑛+ 1 1 ⋅⋅⋅ 1 ... d d ... 1 d d ... ... d d ... ... d d 1 0 ⋅⋅⋅⋅⋅⋅ 0 1 ⋅⋅⋅ 1 3𝑚+ 2𝑛+ 1 ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) 3 = 1 9(𝑚+ 𝑛)2 (det ( 3𝑛+ 2𝑚+ 1 1 ⋅⋅⋅ 1 1 d d ... ... d d 1 1 ⋅⋅⋅ 1 3𝑛+ 2𝑚+ 1 ) 𝑚×𝑚 ) 3 × (det ( 3𝑚+ 2𝑛+ 1 1 ⋅⋅⋅ 1 1 d d ... ... d d 1 1 ⋅⋅⋅ 1 3𝑚+ 2𝑛+ 1 ) 𝑛×𝑛 ) 3 . (27 Journal of Applied Mathematics 15 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 ... d d ... ... d d ... ... d d ... ... d d ... ... d d ... ... d d ... 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 ... d d ... ... d d ... ... d d ... ... d d ... ... d d ... ... d d ... 4. Number of Spanning Trees of Composition Product of Graphs 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 ... d d ... ... d d ... ... d d ... ... d d ... ... d d ... ... d d ... 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 3𝑚+ 2𝑛+ 1 1 ⋅⋅⋅ 1 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 1 d d ... ... d d ... ... d d ... ... d d 1 ... d d ... ... d d ... 1 ⋅⋅⋅ 1 3𝑚+ 2𝑛+ 1 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 3𝑛+ 2𝑚+ 1 1 ⋅⋅⋅ 1 0 ⋅⋅⋅⋅⋅⋅ 0 ... d d ... 1 d d ... ... d d ... ... d d ... ... d d 1 ... d d ... 0 ⋅⋅⋅⋅⋅⋅ 0 1 ⋅⋅⋅ 1 3𝑛+ 2𝑚+ 1 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 3𝑚+ 2𝑛+ 1 1 ⋅⋅⋅ 1 ... d d ... ... d d ... 1 d d ... ... d d ... ... d d ... ... d d 1 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 1 ⋅⋅⋅ 1 3𝑚+ 2𝑛+ 1 ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) = 1 9(𝑚+ 𝑛)2 ( ( ( ( ( ( ( ( ( ( det ( ( ( ( ( ( ( ( ( ( 3𝑛+ 2𝑚+ 1 1 ⋅⋅⋅ 1 0 ⋅⋅⋅⋅⋅⋅ 0 1 d d ... ... d d ... ... d d 1 ... d d ... 1 ⋅⋅⋅ 1 3𝑛+ 2𝑚+ 1 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 3𝑚+ 2𝑛+ 1 1 ⋅⋅⋅ 1 ... d d ... 1 d d ... ... d d ... ... d d 1 0 ⋅⋅⋅⋅⋅⋅ 0 1 ⋅⋅⋅ 1 3𝑚+ 2𝑛+ 1 ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) 3 = 1 9(𝑚+ 𝑛)2 (det ( 3𝑛+ 2𝑚+ 1 1 ⋅⋅⋅ 1 1 d d ... ... d d 1 1 ⋅⋅⋅ 1 3𝑛+ 2𝑚+ 1 ) 𝑚×𝑚 ) 3 × (det ( 3𝑚+ 2𝑛+ 1 1 ⋅⋅⋅ 1 1 d d ... 4. Number of Spanning Trees of Composition Product of Graphs d d ... ... d d ... ... d d ... ... d d ... 0 ⋅⋅⋅⋅⋅⋅ 0 1 ⋅⋅⋅ 1 3𝑚+ 2𝑛+ 1 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 3𝑛+ 2𝑚+ 1 1 ⋅⋅⋅ 1 ... d d ... ... d d ... 1 d d ... ... d d ... ... d d ... ... d d 1 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 1 ⋅⋅⋅ 1 3𝑛+ 2𝑚+ 1 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 ... d d ... ... d d ... ... d d ... ... d d ... ... d d ... ... d d ... 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 ... d d ... ... d d ... ... d d ... ... d d ... ... d d ... ... d d ... 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 ... d d ... ... d d ... ... d d ... ... d d ... ... d d ... ... d d ... 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 Journal of Applied Mathematics 15 Journal of Applied Mathematics 15 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 ... d d ... ... d d ... ... d d ... ... d d ... ... d d ... ... d d ... 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 ... d d ... ... d d ... ... d d ... ... d d ... ... d d ... ... d d ... 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 ... d d ... ... d d ... ... d d ... ... d d ... ... d d ... ... d d ... 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 3𝑚+ 2𝑛+ 1 1 ⋅⋅⋅ 1 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 1 d d ... ... d d ... ... d d ... ... d d 1 ... d d ... ... d d ... 1 ⋅⋅⋅ 1 3𝑚+ 2𝑛+ 1 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 3𝑛+ 2𝑚+ 1 1 ⋅⋅⋅ 1 0 ⋅⋅⋅⋅⋅⋅ 0 ... 4. Number of Spanning Trees of Composition Product of Graphs ... d d 1 1 ⋅⋅⋅ 1 3𝑚+ 2𝑛+ 1 ) 𝑛×𝑛 ) 3 . (27) (27) Journal of Applied Mathematics 16 (V1, V2) are adjacent in 𝐺1 ⊗𝐺2 if and only if 𝑢1 is adjacent to V1 in 𝐺1 and 𝑢2 is adjacent to V2 in 𝐺2 [13]. Using Lemma 2, we have Lemma 11. For 𝑚, 𝑛≥1, we have 𝜏(𝐾2 ⊗𝐾𝑚,𝑛) = 0. (30) (30) In particular, 𝜏(𝐾3 ⊗𝐾𝑚,𝑛) = 3 × 23𝑚+3𝑛−5 × 𝑛3𝑚−1 × 𝑚3𝑛−1. (31) 𝜏(𝐾3 ⊗𝐾𝑚,𝑛) = 3 × 23𝑚+3𝑛−5 = 3 × 23𝑚+3𝑛5 × 𝑛3𝑚−1 × 𝑚3𝑛−1. (31) (31) 5. Complexity of Tensor Product of Graphs × 𝑛3𝑚−1 × 𝑚3𝑛−1. (31) The tensor product, or Kronecker product, 𝐺1 ⊗𝐺2, is the simple graph with 𝑉(𝐺1 ⊗𝐺2) = 𝑉1 × 𝑉2, where (𝑢1, 𝑢2) and Proof. Applying Lemma 1, we have Proof. Applying Lemma 1, we have 𝜏(𝐾3 ⊗𝐾𝑚,𝑛) = 1 9(𝑚+ 𝑛)2 det (3 (𝑚+ 𝑛) 𝐼−𝐷+ 𝐴) = 1 9(𝑚+ 𝑛)2 × det ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( 2𝑛+ 1 1 ⋅⋅⋅ 1 1 ⋅⋅⋅⋅⋅⋅ 1 1 1 d d ... ... d d ... ... ... d d 1 ... d d ... ... 1 ⋅⋅⋅ 1 2𝑛+ 1 1 ⋅⋅⋅⋅⋅⋅ 1 1 1 ⋅⋅⋅⋅⋅⋅ 1 2𝑚+ 1 1 ⋅⋅⋅ 1 0 ... d d ... 1 d d ... ... ... d d ... ... d d ... ... 1 ⋅⋅⋅⋅⋅⋅ 1 1 ⋅⋅⋅ 1 2𝑚+ 1 0 1 ⋅⋅⋅⋅⋅⋅ 1 0 ⋅⋅⋅⋅⋅⋅ 0 2𝑛 ... d d ... ... d d ... 1 ... d d ... ... d d ... ... 1 ⋅⋅⋅⋅⋅⋅ 1 0 ⋅⋅⋅⋅⋅⋅ 0 1 0 ⋅⋅⋅⋅⋅⋅ 0 1 ⋅⋅⋅⋅⋅⋅ 1 1 ... d d ... ... d d ... ... ... d d ... ... d d ... ... 0 ⋅⋅⋅⋅⋅⋅ 0 1 ⋅⋅⋅⋅⋅⋅ 1 1 1 ⋅⋅⋅⋅⋅⋅ 1 0 ⋅⋅⋅⋅⋅⋅ 0 1 ... d d ... ... d d ... ... ... d d ... ... d d ... ... 1 ⋅⋅⋅⋅⋅⋅ 1 0 ⋅⋅⋅⋅⋅⋅ 0 1 0 ⋅⋅⋅⋅⋅⋅ 0 1 ⋅⋅⋅⋅⋅⋅ 1 0 ... d d ... ... d d ... ... ... d d ... ... d d ... ... 5. Complexity of Tensor Product of Graphs d d 0 1 ⋅⋅⋅⋅⋅⋅ 1 0 ⋅⋅⋅ 0 2𝑚 ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) 2 × det ( ( ( ( ( ( ( ( ( ( 2𝑛+ 3 3 ⋅⋅⋅ 3 1 ⋅⋅⋅⋅⋅⋅ 1 3 d d ... ... d d ... ... d d 3 ... d d ... 3 ⋅⋅⋅ 3 2𝑛+ 3 1 ⋅⋅⋅⋅⋅⋅ 1 1 ⋅⋅⋅⋅⋅⋅ 1 2𝑚+ 3 3 ⋅⋅⋅ 3 ... d d ... 3 d d ... ... d d ... ... d d 3 1 ⋅⋅⋅⋅⋅⋅ 1 3 ⋅⋅⋅ 3 2𝑚+ 3 ) ) ) ) ) ) ) ) ) ) 0 ⋅⋅⋅⋅⋅⋅ 0 1 ⋅⋅⋅⋅⋅⋅ 1 0 ⋅⋅⋅⋅⋅⋅ 0 ... d d ... ... d d ... ... d d ... ... d d ... ... d d ... ... d d ... 0 ⋅⋅⋅⋅⋅⋅ 0 1 ⋅⋅⋅⋅⋅⋅ 1 0 ⋅⋅⋅⋅⋅⋅ 0 1 ⋅⋅⋅⋅⋅⋅ 1 0 ⋅⋅⋅⋅⋅⋅ 0 1 ⋅⋅⋅⋅⋅⋅ 1 ... d d ... ... d d ... ... d d ... ... d d ... ... d d ... ... d d ... 1 ⋅⋅⋅⋅⋅⋅ 1 0 ⋅⋅⋅⋅⋅⋅ 0 1 ⋅⋅⋅⋅⋅⋅ 1 1 ⋅⋅⋅⋅⋅⋅ 1 1 ⋅⋅⋅⋅⋅⋅ 1 0 ⋅⋅⋅⋅⋅⋅ 0 ... d d ... ... d d ... ... d d ... ... d d ... ... d d ... ... d d ... 1 ⋅⋅⋅⋅⋅⋅ 1 1 ⋅⋅⋅⋅⋅⋅ 1 0 ⋅⋅⋅⋅⋅⋅ 0 2𝑚+ 1 1 ⋅⋅⋅ 1 0 ⋅⋅⋅⋅⋅⋅ 0 1 ⋅⋅⋅⋅⋅⋅ 1 1 d d ... ... d d ... ... d d ... ... d d 1 ... d d ... ... d d ... 1 ⋅⋅⋅ 1 2𝑚+ 1 0 ⋅⋅⋅⋅⋅⋅ 0 1 ⋅⋅⋅⋅⋅⋅ 1 0 ⋅⋅⋅⋅⋅⋅ 0 2𝑛+ 1 1 ⋅⋅⋅ 1 1 ⋅⋅⋅⋅⋅⋅ 1 ... d d ... 1 d d ... ... d d ... ... d d ... ... d d 1 ... d d ... 0 ⋅⋅⋅⋅⋅⋅ 0 1 ⋅⋅⋅ 1 2𝑛+ 1 1 ⋅⋅⋅⋅⋅⋅ 1 1 ⋅⋅⋅⋅⋅⋅ 1 1 ⋅⋅⋅⋅⋅⋅ 1 2𝑚+ 1 1 ⋅⋅⋅ 1 ... d d ... ... d d ... 1 d d ... ... d d ... ... d d ... ... 5. Complexity of Tensor Product of Graphs 0 0 1 1 0 𝜏(𝐾3 ⊗𝐾𝑚,𝑛) = 1 9(𝑚+ 𝑛)2 det (3 (𝑚+ 𝑛) 𝐼−𝐷+ 𝐴) = 1 9(𝑚+ 𝑛)2 9(𝑚+ 𝑛) × det ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( 2𝑛+ 1 1 ⋅⋅⋅ 1 1 ⋅⋅⋅⋅⋅⋅ 1 1 ⋅⋅⋅⋅⋅⋅ 1 1 d d ... ... d d ... ... d d ... ... d d 1 ... d d ... ... d d ... 1 ⋅⋅⋅ 1 2𝑛+ 1 1 ⋅⋅⋅⋅⋅⋅ 1 1 ⋅⋅⋅⋅⋅⋅ 1 1 ⋅⋅⋅⋅⋅⋅ 1 2𝑚+ 1 1 ⋅⋅⋅ 1 0 ⋅⋅⋅⋅⋅⋅ 0 ... d d ... 1 d d ... ... d d ... ... d d ... ... d d ... ... d d ... 1 ⋅⋅⋅⋅⋅⋅ 1 1 ⋅⋅⋅ 1 2𝑚+ 1 0 ⋅⋅⋅⋅⋅⋅ 0 1 ⋅⋅⋅⋅⋅⋅ 1 0 ⋅⋅⋅⋅⋅⋅ 0 2𝑛+ 1 1 ⋅⋅⋅ 1 ... d d ... ... d d ... 1 d d ... ... d d ... ... d d ... ... d d 1 1 ⋅⋅⋅⋅⋅⋅ 1 0 ⋅⋅⋅⋅⋅⋅ 0 1 ⋅⋅⋅ 1 2𝑛+ 1 0 ⋅⋅⋅⋅⋅⋅ 0 1 ⋅⋅⋅⋅⋅⋅ 1 1 ⋅⋅⋅⋅⋅⋅ 1 ... d d ... ... d d ... ... d d ... ... d d ... ... d d ... ... d d ... 0 ⋅⋅⋅⋅⋅⋅ 0 1 ⋅⋅⋅⋅⋅⋅ 1 1 ⋅⋅⋅⋅⋅⋅ 1 1 ⋅⋅⋅⋅⋅⋅ 1 0 ⋅⋅⋅⋅⋅⋅ 0 1 ⋅⋅⋅⋅⋅⋅ 1 ... d d ... ... d d ... ... d d ... ... d d ... ... d d ... ... d d ... 1 ⋅⋅⋅⋅⋅⋅ 1 0 ⋅⋅⋅⋅⋅⋅ 0 1 ⋅⋅⋅⋅⋅⋅ 1 0 ⋅⋅⋅⋅⋅⋅ 0 1 ⋅⋅⋅⋅⋅⋅ 1 0 ⋅⋅⋅⋅⋅⋅ 0 ... d d ... ... d d ... ... d d ... ... d d ... ... d d ... ... d d ... 0 ⋅⋅⋅⋅⋅⋅ 0 1 ⋅⋅⋅⋅⋅⋅ 1 0 ⋅⋅⋅⋅⋅⋅ 0 17 Journal of Applied Mathematics 17 Applied Mathematics 0 ⋅⋅⋅⋅⋅⋅ 0 1 ⋅⋅⋅⋅⋅⋅ 1 0 ⋅⋅⋅⋅⋅⋅ 0 ... d d ... ... d d ... ... d d ... ... d d ... ... d d ... ... d d ... 5. Complexity of Tensor Product of Graphs 0 ⋅⋅⋅⋅⋅⋅ 0 1 ⋅⋅⋅⋅⋅⋅ 1 0 ⋅⋅⋅⋅⋅⋅ 0 1 ⋅⋅⋅⋅⋅⋅ 1 0 ⋅⋅⋅⋅⋅⋅ 0 1 ⋅⋅⋅⋅⋅⋅ 1 ... d d ... ... d d ... ... d d ... ... d d ... ... d d ... ... d d ... 1 ⋅⋅⋅⋅⋅⋅ 1 0 ⋅⋅⋅⋅⋅⋅ 0 1 ⋅⋅⋅⋅⋅⋅ 1 1 ⋅⋅⋅⋅⋅⋅ 1 1 ⋅⋅⋅⋅⋅⋅ 1 0 ⋅⋅⋅⋅⋅⋅ 0 ... d d ... ... d d ... ... d d ... ... d d ... ... d d ... ... d d ... 1 ⋅⋅⋅⋅⋅⋅ 1 1 ⋅⋅⋅⋅⋅⋅ 1 0 ⋅⋅⋅⋅⋅⋅ 0 2𝑚+ 1 1 ⋅⋅⋅ 1 0 ⋅⋅⋅⋅⋅⋅ 0 1 ⋅⋅⋅⋅⋅⋅ 1 1 d d ... ... d d ... ... d d ... ... d d 1 ... d d ... ... d d ... 1 ⋅⋅⋅ 1 2𝑚+ 1 0 ⋅⋅⋅⋅⋅⋅ 0 1 ⋅⋅⋅⋅⋅⋅ 1 0 ⋅⋅⋅⋅⋅⋅ 0 2𝑛+ 1 1 ⋅⋅⋅ 1 1 ⋅⋅⋅⋅⋅⋅ 1 ... d d ... 1 d d ... ... d d ... ... d d ... ... d d 1 ... d d ... 0 ⋅⋅⋅⋅⋅⋅ 0 1 ⋅⋅⋅ 1 2𝑛+ 1 1 ⋅⋅⋅⋅⋅⋅ 1 1 ⋅⋅⋅⋅⋅⋅ 1 1 ⋅⋅⋅⋅⋅⋅ 1 2𝑚+ 1 1 ⋅⋅⋅ 1 ... d d ... ... d d ... 1 d d ... ... d d ... ... d d ... ... d d 1 1 ⋅⋅⋅⋅⋅⋅ 1 1 ⋅⋅⋅⋅⋅⋅ 1 1 ⋅⋅⋅ 1 2𝑚+ 1 ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) = 1 9(𝑚+ 𝑛)2 det ( 𝐴𝐵𝐵 𝐵𝐴𝐵 𝐵𝐵𝐴 ) = 1 9(𝑚+ 𝑛)2 [det (𝐴−𝐵)]2 [det (𝐴+ 2𝐵)] = 1 9(𝑚+ 𝑛)2 ( ( ( ( ( ( ( ( ( ( det ( ( ( ( ( ( ( ( ( ( 2𝑛 0 ⋅⋅⋅ 0 1 ⋅⋅⋅⋅⋅⋅ 1 0 d d ... ... d d ... ... d d 0 ... d d ... 0 ⋅⋅⋅ 0 2𝑛 1 ⋅⋅⋅⋅⋅⋅ 1 1 ⋅⋅⋅⋅⋅⋅ 1 2𝑚 0 ⋅⋅⋅ 0 ... d d ... 0 d d ... ... d d ... ... 5. Complexity of Tensor Product of Graphs d d 1 1 ⋅⋅⋅⋅⋅⋅ 1 1 ⋅⋅⋅⋅⋅⋅ 1 1 ⋅⋅⋅ 1 2𝑚+ 1 ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) = 1 9(𝑚+ 𝑛)2 det ( 𝐴𝐵𝐵 𝐵𝐴𝐵 𝐵𝐵𝐴 ) = 1 9(𝑚+ 𝑛)2 [det (𝐴−𝐵)]2 [det (𝐴+ 2𝐵)] = 1 9(𝑚+ 𝑛)2 ( ( ( ( ( ( ( ( ( ( det ( ( ( ( ( ( ( ( ( ( 2𝑛 0 ⋅⋅⋅ 0 1 ⋅⋅⋅⋅⋅⋅ 1 0 d d ... ... d d ... ... d d 0 ... d d ... 0 ⋅⋅⋅ 0 2𝑛 1 ⋅⋅⋅⋅⋅⋅ 1 1 ⋅⋅⋅⋅⋅⋅ 1 2𝑚 0 ⋅⋅⋅ 0 ... d d ... 0 d d ... ... d d ... ... d d 0 1 ⋅⋅⋅⋅⋅⋅ 1 0 ⋅⋅⋅ 0 2𝑚 ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) 2 × det ( ( ( ( ( ( ( ( ( ( 2𝑛+ 3 3 ⋅⋅⋅ 3 1 ⋅⋅⋅⋅⋅⋅ 1 3 d d ... ... d d ... ... d d 3 ... d d ... 3 ⋅⋅⋅ 3 2𝑛+ 3 1 ⋅⋅⋅⋅⋅⋅ 1 1 ⋅⋅⋅⋅⋅⋅ 1 2𝑚+ 3 3 ⋅⋅⋅ 3 ... d d ... 3 d d ... . . . ) ) ) ) ) ) ) ) ) ) 18 Journal of Applied Mathematics = 1 9(𝑚+ 𝑛)2 det ( 𝐴 𝐵 𝐵𝑇𝐶) × det ( 𝐷𝐸 𝐸𝑇𝐹) = 1 9(𝑚+ 𝑛)2 × (det 𝐴)2(det (𝐶−𝐵𝑇𝐴−1𝐵)) 2 × det 𝐷det (𝐹−𝐸𝑇𝐷−1𝐸) . ( ) Journal of Applied Mathematics 18 18 = 1 9(𝑚+ 𝑛)2 det ( 𝐴 𝐵 𝐵𝑇𝐶) × det ( 𝐷𝐸 𝐸𝑇𝐹) = 1 9(𝑚+ 𝑛)2 × (det 𝐴)2(det (𝐶 𝐵𝑇𝐴−1𝐵)) 2 × det 𝐷det (𝐹 𝐸𝑇𝐷−1𝐸) = 1 9(𝑚+ 𝑛)2 det ( 𝐴 𝐵 𝐵𝑇𝐶) × det ( 𝐷𝐸 𝐸𝑇𝐹) = 1 9(𝑚+ 𝑛)2 9(𝑚+ 𝑛) ( 𝐶) ( ) 9(𝑚+ 𝑛) × (det 𝐴)2(det (𝐶−𝐵𝑇𝐴−1𝐵)) 2 × det 𝐷det (𝐹−𝐸𝑇𝐷−1𝐸) . × (det 𝐴)2(det (𝐶−𝐵𝑇𝐴−1𝐵)) 2 × det 𝐷det (𝐹−𝐸𝑇𝐷−1𝐸) . (32) (32) (32) Thus, 𝜏(𝐾3 ⊗𝐾𝑚,𝑛) = 1 9(𝑚+ 𝑛)2 (det ( 2𝑛 0 ⋅⋅⋅ 0 0 d d ... 5. Complexity of Tensor Product of Graphs d d 1 1 ⋅⋅⋅ 1 𝑛(4𝑚+ 6) + 6𝑚2 + 8𝑚 6𝑛+ 8𝑚 ) ) ) )𝑛×𝑛 . (33) (33) Using Lemma 2, we have Using Lemma 2, we have 𝜏(𝐾3 ⊗𝐾𝑚,𝑛) = 1 9(𝑚+ 𝑛)2 (2𝑛)2𝑚 × [( 𝑚 2𝑛) 2𝑛 × (−3𝑛)2 × (−4𝑛)2𝑛−2] × [3𝑚(2𝑛+ 3𝑚 3 ) × (2𝑛 3 ) 𝑚−1 ] × (6𝑛+ 8𝑚 2𝑛+ 3𝑚) 𝑛 × [(4𝑛𝑚+ 6𝑛+ 6𝑚2 + 8𝑚 6𝑛+ 8𝑚 + 𝑛−1) ×(4𝑛𝑚+ 6𝑛+ 6𝑚2 + 8𝑚 6𝑛+ 8𝑚 −1) 𝑛−1 ] = 3 × (2𝑛)2𝑚−2𝑛× 𝑚3𝑛−1 × 𝑛2𝑛+𝑚−1 × 25𝑛+𝑚−5 = 3 × 23𝑚+3𝑛−5 × 𝑛3𝑚−1 × 𝑚3𝑛−1. 𝜏(𝐾3 ⊗𝐾𝑚,𝑛) = 1 9(𝑚+ 𝑛)2 (2𝑛)2𝑚 (34) In particular, 𝜏(𝐾3 ⊗𝐾𝑛,𝑛) = 3 × 26𝑛−5 × 𝑛6𝑛−2; 𝑛≥1. (35) (35) 6. Number of Spanning Trees of Symmetric Product of Graphs The symmetric product, 𝐺1 ⊕𝐺2, is the simple graph with 𝑉(𝐺1 ∘𝐺2) = 𝑉1 × 𝑉2, where (𝑢1, 𝑢2) and (V1, V2) are adjacent in 𝐺1 ⊕𝐺2 if and only if either 𝑢1 is adjacent to V1 in 𝐺1 and 𝑢2 is not adjacent to V2 in 𝐺2, or 𝑢1 is not adjacent to V1 in 𝐺1and 𝑢2 is adjacent to V2 in 𝐺2 [13]. 5. Complexity of Tensor Product of Graphs ... d d 0 0 ⋅⋅⋅ 0 2𝑛 ) 𝑚×𝑚 ) 2 × ( ( ( ( ( det ( ( ( ( ( 𝑚(4𝑛−1) 2𝑛 −𝑚 2𝑛 ⋅⋅⋅ −𝑚 2𝑛 −𝑚 2𝑛 d d ... ... d d −𝑚 2𝑛 −𝑚 2𝑛 ⋅⋅⋅ −𝑚 2𝑛 𝑚(4𝑛−1) 2𝑛 ) ) ) ) )𝑛×𝑛 ) ) ) ) ) 2 × det ( 2𝑛+ 3 3 ⋅⋅⋅ 3 3 d d ... ... d d 3 3 ⋅⋅⋅ 3 2𝑛+ 3 ) 𝑚×𝑚 × det ( ( ( ( ( 𝑛(4𝑚+ 6) + 6𝑚2 + 8𝑚 2𝑛+ 3𝑚 6𝑛+ 8𝑚 2𝑛+ 3𝑚 ⋅⋅⋅ 6𝑛+ 8𝑚 2𝑛+ 3𝑚 6𝑛+ 8𝑚 2𝑛+ 3𝑚 d d ... ... d d 6𝑛+ 8𝑚 2𝑛+ 3𝑚 6𝑛+ 8𝑚 2𝑛+ 3𝑚 ⋅⋅⋅ 6𝑛+ 8𝑚 2𝑛+ 3𝑚 𝑛(4𝑚+ 6) + 6𝑚2 + 8𝑚 2𝑛+ 3𝑚 ) ) ) ) )𝑛×𝑛 = 1 9(𝑚+ 𝑛)2 (2𝑛)2𝑚× (−𝑚 2𝑛) 2𝑛 × ( ( ( det ( ( ( 𝑚(4𝑛−1) −𝑚 1 ⋅⋅⋅ 1 1 d d ... ... d d 1 1 ⋅⋅⋅ 1 𝑚(4𝑛−1) −𝑚 ) ) )𝑛×𝑛 ) ) ) 2 × 3𝑚× det ( ( ( 2𝑛+ 3 3 1 ⋅⋅⋅ 1 1 d d ... ... d d 1 1 ⋅⋅⋅ 1 2𝑛+ 3 3 ) ) ) × (6𝑛+ 8𝑚 2𝑛+ 3𝑚) 𝑛 × det ( ( ( ( ( 𝑛(4𝑚+ 6) + 6𝑚2 + 8𝑚 2𝑛+ 3𝑚 6𝑛+ 8𝑚 2𝑛+ 3𝑚 ⋅⋅⋅ 6𝑛+ 8𝑚 2𝑛+ 3𝑚 6𝑛+ 8𝑚 2𝑛+ 3𝑚 d d ... ... d d 6𝑛+ 8𝑚 2𝑛+ 3𝑚 6𝑛+ 8𝑚 2𝑛+ 3𝑚 ⋅⋅⋅ 6𝑛+ 8𝑚 2𝑛+ 3𝑚 𝑛(4𝑚+ 6) + 6𝑚2 + 8𝑚 2𝑛+ 3𝑚 ) ) ) ) )𝑛×𝑛 = 1 9(𝑚+ 𝑛)2 (2𝑛)2𝑚× (−𝑚 2𝑛) 2𝑛 × ( ( ( det ( ( ( 𝑚(4𝑛−1) −𝑚 1 ⋅⋅⋅ 1 1 d d ... ... d d 1 1 ⋅⋅⋅ 1 𝑚(4𝑛−1) −𝑚 ) ) )𝑛×𝑛 ) ) ) 2 Journal of Applied Mathematics 19 × det ( ( ( ( 𝑛(4𝑚+ 6) + 6𝑚2 + 8𝑚 6𝑛+ 8𝑚 1 ⋅⋅⋅ 1 1 d d ... ... d d 1 1 ⋅⋅⋅ 1 𝑛(4𝑚+ 6) + 6𝑚2 + 8𝑚 6𝑛+ 8𝑚 ) ) ) )𝑛×𝑛 . (33) Journal of Applied Mathematics 19 × det ( ( ( ( 𝑛(4𝑚+ 6) + 6𝑚2 + 8𝑚 6𝑛+ 8𝑚 1 ⋅⋅⋅ 1 1 d d ... ... Theorem 13. For 𝑛, 𝑚≥1, we have 𝜏(𝐾2 ⊕𝐾𝑚,𝑛) = (𝑚+ 𝑛)2(𝑚+𝑛−1). (36) (36) Proof. Applying Lemma 1, we have 𝜏(𝐾2 ⊕𝐾𝑚,𝑛) = 1 4(𝑚+ 𝑛)2 det (2 (𝑚+ 𝑛) 𝐼−𝐷+ 𝐴) = 1 4(𝑚+ 𝑛)2 𝜏(𝐾2 ⊕𝐾𝑚,𝑛) = 1 4(𝑚+ 𝑛)2 det (2 (𝑚+ 𝑛) 𝐼−𝐷+ 𝐴) = 1 4(𝑚+ 𝑛)2 20 Journal of Applied Mathematics × det ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( 𝑚+ 𝑛+ 1 1 ⋅⋅⋅ 1 0 ⋅⋅⋅⋅⋅⋅ 0 1 d d ... ... d d ... ... d d 1 ... d d ... 1 ⋅⋅⋅ 1 𝑚+ 𝑛+ 1 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 𝑚+ 𝑛+ 1 1 ⋅⋅⋅ 1 ... d d ... 1 d d ... ... d d ... ... d d 1 0 ⋅⋅⋅⋅⋅⋅ 0 1 ⋅⋅⋅ 1 𝑚+ 𝑛+ 1 0 ⋅⋅⋅⋅⋅⋅ 0 1 ⋅⋅⋅⋅⋅⋅ 1 ... d d ... ... d d ... ... d d ... ... d d ... 0 ⋅⋅⋅⋅⋅⋅ 0 1 ⋅⋅⋅⋅⋅⋅ 1 1 ⋅⋅⋅⋅⋅⋅ 1 0 ⋅⋅⋅⋅⋅⋅ 0 ... d d ... ... d d ... ... d d ... ... d d ... 1 ⋅⋅⋅⋅⋅⋅ 1 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 1 ⋅⋅⋅⋅⋅⋅ 1 ... d d ... ... d d ... ... d d ... ... d d ... 0 ⋅⋅⋅⋅⋅⋅ 0 1 ⋅⋅⋅⋅⋅⋅ 1 1 ⋅⋅⋅⋅⋅⋅ 1 0 ⋅⋅⋅⋅⋅⋅ 0 ... d d ... ... d d ... ... d d ... ... d d ... 1 ⋅⋅⋅⋅⋅⋅ 1 0 ⋅⋅⋅⋅⋅⋅ 0 𝑚+ 𝑛+ 1 1 ⋅⋅⋅ 1 0 ⋅⋅⋅⋅⋅⋅ 0 1 d d ... ... d d ... ... d d 1 ... d d ... 1 ⋅⋅⋅ 1 𝑚+ 𝑛+ 1 0 ⋅⋅⋅⋅⋅⋅ 0 0 d d 0 𝑚+ 𝑛+ 1 1 ⋅⋅⋅ 1 ... d d ... 1 d d ... ... d d ... ... Theorem 13. For 𝑛, 𝑚≥1, we have d d 1 1 ⋅⋅⋅ 1 𝑛2 + (3𝑚+ 1) 𝑛+ 2𝑚2 + 𝑚 𝑛+ 𝑚 ) ) ) )𝑛×𝑛 . × det ( ( ( ( ( ( ( ( ( ( 𝑚+ 𝑛+ 1 1 ⋅⋅⋅ 1 −1 ⋅⋅⋅⋅⋅⋅ −1 1 d d ... ... d d ... ... d d 1 ... d d ... 1 ⋅⋅⋅ 1 𝑚+ 𝑛+ 1 −1 ⋅⋅⋅⋅⋅⋅ −1 −1 ⋅⋅⋅⋅⋅⋅ −1 𝑚+ 𝑛+ 1 1 ⋅⋅⋅ 1 ... d d ... 1 d d ... ... d d ... ... d d 1 −1 ⋅⋅⋅⋅⋅⋅ −1 1 ⋅⋅⋅ 1 𝑚+ 𝑛+ 1 ) ) ) ) ) ) ) ) ) ) = 1 4(𝑚+ 𝑛)2 (𝑚+ 𝑛+ 1 + 𝑚+ 𝑛−1) (𝑚+ 𝑛+ 1 −1)𝑚+𝑛−1 × det ( 𝐴 𝐵 𝐵𝑇𝐶) = 1 2(𝑚+ 𝑛)𝑚+𝑛−2 × det 𝐴det (𝐶−𝐵𝑇𝐴−1𝐵) = 1 2(𝑚+ 𝑛)𝑚+𝑛−2 × (2𝑚+ 𝑛) (𝑚+ 𝑛)𝑚−1 × det ( ( ( ( ( ( 𝑛2 + (3𝑚+ 1) 𝑛+ 2𝑚2 + 𝑚 (𝑛+ 2𝑚) 𝑛+ 𝑚 𝑛+ 2𝑚 ⋅⋅⋅ 𝑛+ 𝑚 𝑛+ 2𝑚 𝑛+ 𝑚 𝑛+ 2𝑚 d d ... ... d d 𝑛+ 𝑚 𝑛+ 2𝑚 𝑛+ 𝑚 𝑛+ 2𝑚 ⋅⋅⋅ 𝑛+ 𝑚 𝑛+ 2𝑚 𝑛2 + (3𝑚+ 1) 𝑛+ 2𝑚2 + 𝑚 (𝑛+ 2𝑚) ) ) ) ) ) )𝑛×𝑛 = 1 2(𝑚+ 𝑛)2𝑚+𝑛−3 × (2𝑚+ 𝑛) × ( 𝑛+ 𝑚 𝑛+ 2𝑚) 𝑛 × det ( ( ( ( 𝑛2 + (3𝑚+ 1) 𝑛+ 2𝑚2 + 𝑚 𝑛+ 𝑚 1 ⋅⋅⋅ 1 1 d d ... ... d d 1 1 ⋅⋅⋅ 1 𝑛2 + (3𝑚+ 1) 𝑛+ 2𝑚2 + 𝑚 𝑛+ 𝑚 ) ) ) )𝑛×𝑛 . (37) × det ( ( ( ( ( ( 𝑛2 + (3𝑚+ 1) 𝑛+ 2𝑚2 + 𝑚 (𝑛+ 2𝑚) 𝑛+ 𝑚 𝑛+ 2𝑚 ⋅⋅⋅ 𝑛+ 𝑚 𝑛+ 2𝑚 𝑛+ 𝑚 𝑛+ 2𝑚 d d ... ... Theorem 13. For 𝑛, 𝑚≥1, we have d d 1 0 ⋅⋅⋅⋅⋅⋅ 0 1 ⋅⋅⋅ 1 𝑚+ 𝑛+ 1 ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) = 1 4(𝑚+ 𝑛)2 det ( ( ( ( ( ( ( ( ( ( ( ( ( ( 𝑚+ 𝑛+ 1 1 ⋅⋅⋅ 1 1 ⋅⋅⋅⋅⋅⋅ 1 1 d d ... ... d d ... ... d d 1 ... d d ... 1 ⋅⋅⋅ 1 𝑚+ 𝑛+ 1 1 ⋅⋅⋅⋅⋅⋅ 1 1 ⋅⋅⋅⋅⋅⋅ 1 𝑚+ 𝑛+ 1 1 ⋅⋅⋅ 1 ... d d ... 1 d d ... ... d d ... ... d d 1 1 ⋅⋅⋅⋅⋅⋅ 1 1 ⋅⋅⋅ 1 𝑚+ 𝑛+ 1 ) ) ) ) ) ) ) ) ) ) ) ) ) ) 21 21 Journal of Applied Mathematics × det ( ( ( ( ( ( ( ( ( ( 𝑚+ 𝑛+ 1 1 ⋅⋅⋅ 1 −1 ⋅⋅⋅⋅⋅⋅ −1 1 d d ... ... d d ... ... d d 1 ... d d ... 1 ⋅⋅⋅ 1 𝑚+ 𝑛+ 1 −1 ⋅⋅⋅⋅⋅⋅ −1 −1 ⋅⋅⋅⋅⋅⋅ −1 𝑚+ 𝑛+ 1 1 ⋅⋅⋅ 1 ... d d ... 1 d d ... ... d d ... ... d d 1 −1 ⋅⋅⋅⋅⋅⋅ −1 1 ⋅⋅⋅ 1 𝑚+ 𝑛+ 1 ) ) ) ) ) ) ) ) ) ) = 1 4(𝑚+ 𝑛)2 (𝑚+ 𝑛+ 1 + 𝑚+ 𝑛−1) (𝑚+ 𝑛+ 1 −1)𝑚+𝑛−1 × det ( 𝐴 𝐵 𝐵𝑇𝐶) = 1 2(𝑚+ 𝑛)𝑚+𝑛−2 × det 𝐴det (𝐶−𝐵𝑇𝐴−1𝐵) = 1 2(𝑚+ 𝑛)𝑚+𝑛−2 × (2𝑚+ 𝑛) (𝑚+ 𝑛)𝑚−1 × det ( ( ( ( ( ( 𝑛2 + (3𝑚+ 1) 𝑛+ 2𝑚2 + 𝑚 (𝑛+ 2𝑚) 𝑛+ 𝑚 𝑛+ 2𝑚 ⋅⋅⋅ 𝑛+ 𝑚 𝑛+ 2𝑚 𝑛+ 𝑚 𝑛+ 2𝑚 d d ... ... d d 𝑛+ 𝑚 𝑛+ 2𝑚 𝑛+ 𝑚 𝑛+ 2𝑚 ⋅⋅⋅ 𝑛+ 𝑚 𝑛+ 2𝑚 𝑛2 + (3𝑚+ 1) 𝑛+ 2𝑚2 + 𝑚 (𝑛+ 2𝑚) ) ) ) ) ) )𝑛×𝑛 = 1 2(𝑚+ 𝑛)2𝑚+𝑛−3 × (2𝑚+ 𝑛) × ( 𝑛+ 𝑚 𝑛+ 2𝑚) 𝑛 × det ( ( ( ( 𝑛2 + (3𝑚+ 1) 𝑛+ 2𝑚2 + 𝑚 𝑛+ 𝑚 1 ⋅⋅⋅ 1 1 d d ... ... Theorem 13. For 𝑛, 𝑚≥1, we have d d 𝑛+ 𝑚 𝑛+ 2𝑚 𝑛+ 𝑚 𝑛+ 2𝑚 ⋅⋅⋅ 𝑛+ 𝑚 𝑛+ 2𝑚 𝑛2 + (3𝑚+ 1) 𝑛+ 2𝑚2 + 𝑚 (𝑛+ 2𝑚) ) ) ) ) ) )𝑛×𝑛 = 1 2(𝑚+ 𝑛)2𝑚+𝑛−3 × (2𝑚+ 𝑛) × ( 𝑛+ 𝑚 𝑛+ 2𝑚) 𝑛 ( 𝑛2 + (3𝑚+ 1) 𝑛+ 2𝑚2 + 𝑚 𝑛+ 𝑚 1 ⋅⋅⋅ 1 ) (37) Thus, In particular, (𝐾 𝐾 ) (2 )2(2𝑛−1) 1 (39) Thus, (39) 𝜏(𝐾2 ⊕𝐾𝑚,𝑛) = 1 2(𝑚+ 𝑛)2𝑚+𝑛−3 × (2𝑚+ 𝑛) × ( 𝑛+ 𝑚 𝑛+ 2𝑚) 𝑛 × (2𝑛+ 2𝑚) (𝑛+ 2𝑚)𝑛−1 = (𝑚+ 𝑛)2(𝑚+𝑛−1). (38) , Theorem 14. For 𝑚, 𝑛≥1, we have 𝜏(𝐾3 ⊕𝐾𝑚,𝑛) = 3(2𝑚+ 𝑛)3𝑚−3 × (2𝑛+ 𝑚)3𝑛−3(𝑚2 + 𝑛2 + 3𝑚𝑛) 2. (40) 𝜏(𝐾2 ⊕𝐾𝑚,𝑛) = 1 2(𝑚+ 𝑛)2𝑚+𝑛−3 × (2𝑚+ 𝑛) × ( 𝑛+ 𝑚 𝑛+ 2𝑚) 𝑛 × (2𝑛+ 2𝑚) (𝑛+ 2𝑚)𝑛−1 = (𝑚+ 𝑛)2(𝑚+𝑛−1). (38) Theorem 14. For 𝑚, 𝑛≥1, we have 𝜏(𝐾3 ⊕𝐾𝑚,𝑛) = 3(2𝑚+ 𝑛)3𝑚−3 × (2𝑛+ 𝑚)3𝑛−3(𝑚2 + 𝑛2 + 3𝑚𝑛) 2. (40) Proof Applying Lemma 1 we have 𝜏(𝐾2 ⊕𝐾𝑚,𝑛) = 1 2(𝑚+ 𝑛)2𝑚+𝑛−3 × (2𝑚+ 𝑛) Theorem 14. For 𝑚, 𝑛≥1, we have 𝜏(𝐾3 ⊕𝐾𝑚,𝑛) = 3(2𝑚+ 𝑛)3𝑚−3 𝜏(𝐾3 ⊕𝐾𝑚,𝑛) = 3(2𝑚+ 𝑛)3𝑚−3 (40) × (2𝑛+ 𝑚)3𝑛−3(𝑚2 + 𝑛2 + 3𝑚𝑛) 2. (40) (38) 𝜏(𝐾3 ⊕𝐾𝑚,𝑛) = 1 9(𝑚+ 𝑛)2 det (3 (𝑚+ 𝑛) 𝐼−𝐷+ 𝐴) = 1 9(𝑚+ 𝑛)2 𝜏(𝐾3 ⊕𝐾𝑚,𝑛) = 1 9(𝑚+ 𝑛)2 det (3 (𝑚+ 𝑛) 𝐼−𝐷+ 𝐴) = 1 9(𝑚+ 𝑛)2 22 Journal of Applied Mathematics 22 × det ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( 2𝑚+ 𝑛+ 1 1 ⋅⋅⋅ 1 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 1 d d ... ... d d ... ... d d ... ... d d 1 ... d d ... ... d d ... 1 ⋅⋅⋅ 1 2𝑚+ 𝑛+ 1 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 2𝑛+ 𝑚+ 1 1 ⋅⋅⋅ 1 1 ⋅⋅⋅⋅⋅⋅ 1 ... d d ... 1 d d ... ... d d ... ... d d ... ... d d ... ... d d ... Theorem 13. For 𝑛, 𝑚≥1, we have 0 ⋅⋅⋅⋅⋅⋅ 0 1 ⋅⋅⋅ 1 2𝑛+ 𝑚+ 1 1 ⋅⋅⋅⋅⋅⋅ 1 0 ⋅⋅⋅⋅⋅⋅ 0 1 ⋅⋅⋅⋅⋅⋅ 1 2𝑚+ 𝑛+ 1 1 ⋅⋅⋅ 1 ... d d ... ... d d ... 1 d d ... ... d d ... ... d d ... ... d d 1 0 ⋅⋅⋅⋅⋅⋅ 0 1 ⋅⋅⋅⋅⋅⋅ 1 1 ⋅⋅⋅ 1 2𝑚+ 𝑛+ 1 1 ⋅⋅⋅⋅⋅⋅ 1 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 ... d d ... ... d d ... ... d d ... ... d d ... ... d d ... ... d d ... 1 ⋅⋅⋅⋅⋅⋅ 1 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 1 ⋅⋅⋅⋅⋅⋅ 1 0 ⋅⋅⋅⋅⋅⋅ 0 ... d d ... ... d d ... ... d d ... ... d d ... ... d d ... ... d d ... 0 ⋅⋅⋅⋅⋅⋅ 0 1 ⋅⋅⋅⋅⋅⋅ 1 0 ⋅⋅⋅⋅⋅⋅ 0 1 ⋅⋅⋅⋅⋅⋅ 1 0 ⋅⋅⋅⋅⋅⋅ 0 1 ⋅⋅⋅⋅⋅⋅ 1 ... d d ... ... d d ... ... d d ... ... d d ... ... d d ... ... d d ... 1 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 1 ⋅⋅⋅⋅⋅⋅ 1 1 ⋅⋅⋅⋅⋅⋅ 1 0 ⋅⋅⋅⋅⋅⋅ 0 1 ⋅⋅⋅⋅⋅⋅ 1 ... d d ... ... d d ... ... d d ... ... d d ... ... d d ... ... d d ... 1 ⋅⋅⋅⋅⋅⋅ 1 0 ⋅⋅⋅⋅⋅⋅ 0 1 ⋅⋅⋅⋅⋅⋅ 1 0 ⋅⋅⋅⋅⋅⋅ 0 1 ⋅⋅⋅⋅⋅⋅ 1 0 ⋅⋅⋅⋅⋅⋅ 0 ... d d ... ... d d ... ... d d ... ... d d ... ... d d ... ... d d 1 0 ⋅⋅⋅⋅⋅⋅ 0 1 ⋅⋅⋅⋅⋅⋅ 1 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 1 ⋅⋅⋅⋅⋅⋅ 1 ... d d ... ... d d ... ... d d ... ... d d ... ... d d ... ... d d ... 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 1 ⋅⋅⋅⋅⋅⋅ 1 2𝑛+ 𝑚+ 1 1 ⋅⋅⋅ 1 1 ⋅⋅⋅⋅⋅⋅ 1 0 ⋅⋅⋅⋅⋅⋅ 0 1 d d ... ... d d ... ... d d ... ... d d 1 ... d d ... ... d d ... 1 ⋅⋅⋅ 1 2𝑛+ 𝑚+ 1 1 ⋅⋅⋅⋅⋅⋅ 1 0 ⋅⋅⋅⋅⋅⋅ 0 1 ⋅⋅⋅⋅⋅⋅ 1 2𝑚+ 𝑛+ 1 1 ⋅⋅⋅ 1 0 ⋅⋅⋅⋅⋅⋅ 0 ... d d ... 1 d d ... ... d d ... ... d d ... ... d d 1 ... d d ... Theorem 13. For 𝑛, 𝑚≥1, we have 1 ⋅⋅⋅⋅⋅⋅ 1 1 ⋅⋅⋅ 1 2𝑚+ 𝑛+ 1 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 2𝑛+ 𝑚+ 1 1 ⋅⋅⋅ 1 ... d d ... ... d d ... 1 d d ... ... d d ... ... d d ... ... d d 1 0 ⋅⋅⋅⋅⋅⋅ 0 0 ⋅⋅⋅⋅⋅⋅ 0 1 ⋅⋅⋅ 1 2𝑛+ 𝑚+ 1 ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) 23 Journal of Applied Mathematics nal of Applied Mathematics = 1 9(𝑚+ 𝑛)2 det ( 𝐴𝐵𝐵 𝐵𝐴𝐵 𝐵𝐵𝐴 ) = 1 9(𝑚+ 𝑛)2 [det (𝐴−𝐵)]2 [det (𝐴+ 2𝐵)] = 1 9(𝑚+ 𝑛)2 ( ( ( ( ( ( ( ( ( ( det ( ( ( ( ( ( ( ( ( ( 2𝑚+ 𝑛+ 1 1 ⋅⋅⋅ 1 −1 ⋅⋅⋅⋅⋅⋅ −1 1 d d ... ... d d ... ... d d 1 ... d d ... 1 ⋅⋅⋅ 1 2𝑚+ 𝑛+ 1 −1 ⋅⋅⋅⋅⋅⋅ −1 −1 ⋅⋅⋅⋅⋅⋅ −1 2𝑛+ 𝑚+ 1 1 ⋅⋅⋅ 1 ... d d ... 1 d d ... ... d d ... ... d d 1 −1 ⋅⋅⋅⋅⋅⋅ −1 1 ⋅⋅⋅ 1 2𝑛+ 𝑚+ 1 ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) 2 × det ( ( ( ( ( ( ( ( ( ( 2𝑚+ 𝑛+ 1 1 ⋅⋅⋅ 1 2 ⋅⋅⋅⋅⋅⋅ 2 1 d d ... ... d d ... ... d d 1 ... d d ... 1 ⋅⋅⋅ 1 2𝑚+ 𝑛+ 1 2 ⋅⋅⋅⋅⋅⋅ 2 2 ⋅⋅⋅⋅⋅⋅ 2 2𝑛+ 𝑚+ 1 1 ⋅⋅⋅ 1 ... d d ... 3 d d ... ... d d ... ... Theorem 13. For 𝑛, 𝑚≥1, we have d d 1 2 ⋅⋅⋅⋅⋅⋅ 2 1 ⋅⋅⋅ 1 2𝑛+ 𝑚+ 1 ) ) ) ) ) ) ) ) ) ) = 1 9(𝑚+ 𝑛)2 (det ( 𝐴 𝐵 𝐵𝑇𝐶)) 2 × det ( 𝐷𝐸 𝐸𝑇𝐹) = 1 9(𝑚+ 𝑛)2 × (det 𝐴)2(det (𝐶−𝐵𝑇𝐴−1𝐵)) 2 × det 𝐷det (𝐹−𝐸𝑇𝐷−1𝐸) = (3𝑚+ 𝑛)2(2𝑚+ 𝑛)2𝑚−2 9(𝑚+ 𝑛)2 × ( ( ( ( ( ( ( det ( ( ( ( ( ( 2𝑛2 + 𝑛(7𝑚+ 1) + 3𝑚2 + 2𝑚 𝑛+ 3𝑚 𝑛+ 2𝑚 𝑛+ 3𝑚 ⋅⋅⋅ 𝑛+ 2𝑚 𝑛+ 3𝑚 𝑛+ 2𝑚 𝑛+ 3𝑚 d d ... ... d d 𝑛+ 2𝑚 𝑛+ 3𝑚 𝑛+ 2𝑚 𝑛+ 3𝑚 ⋅⋅⋅ 𝑛+ 2𝑚 𝑛+ 3𝑚 2𝑛2 + 𝑛(7𝑚+ 1) + 3𝑚2 + 2𝑚 𝑛+ 3𝑚 ) ) ) ) ) )𝑛×𝑛 ) ) ) ) ) ) ) 2 × (3𝑚+ 𝑛) (2𝑚+ 𝑛)𝑚−1 × det ( ( ( ( ( ( 2𝑛2 + 𝑛(7𝑚+ 1) + 3𝑚2 −𝑚 𝑛+ 3𝑚 𝑛−𝑚 𝑛+ 3𝑚 ⋅⋅⋅ 𝑛−𝑚 𝑛+ 3𝑚 𝑛−𝑚 𝑛+ 3𝑚 d d ... ... d d 𝑛−𝑚 𝑛+ 3𝑚 𝑛−𝑚 𝑛−𝑚 2𝑛2 + 𝑛(7𝑚+ 1) + 3𝑚2 −𝑚 ) ) ) ) ) ) = 1 9(𝑚+ 𝑛)2 det ( 𝐴𝐵𝐵 𝐵𝐴𝐵 𝐵𝐵𝐴 ) = 1 9(𝑚+ 𝑛)2 [det (𝐴−𝐵)]2 [det (𝐴+ 2𝐵)] = 1 9(𝑚+ 𝑛)2 ( ( ( ( ( ( ( ( ( ( det ( ( ( ( ( ( ( ( ( ( 2𝑚+ 𝑛+ 1 1 ⋅⋅⋅ 1 −1 ⋅⋅⋅⋅⋅⋅ −1 1 d d ... ... d d ... ... d d 1 ... d d ... 1 ⋅⋅⋅ 1 2𝑚+ 𝑛+ 1 −1 ⋅⋅⋅⋅⋅⋅ −1 −1 ⋅⋅⋅⋅⋅⋅ −1 2𝑛+ 𝑚+ 1 1 ⋅⋅⋅ 1 ... d d ... 1 d d ... ... d d ... ... d d 1 −1 ⋅⋅⋅⋅⋅⋅ −1 1 ⋅⋅⋅ 1 2𝑛+ 𝑚+ 1 ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) 2 × det ( ( ( ( ( ( ( ( ( ( 2𝑚+ 𝑛+ 1 1 ⋅⋅⋅ 1 2 ⋅⋅⋅⋅⋅⋅ 2 1 d d ... ... d d ... ... d d 1 ... d d ... 1 ⋅⋅⋅ 1 2𝑚+ 𝑛+ 1 2 ⋅⋅⋅⋅⋅⋅ 2 2 ⋅⋅⋅⋅⋅⋅ 2 2𝑛+ 𝑚+ 1 1 ⋅⋅⋅ 1 ... d d ... 3 d d ... ... d d ... ... References [1] G. G. Kirchhoff, “Uber die Auflosung der Gleichungen, auf welche man be ider Untersuchung der Linearen Verteilung galvanischer Storme gefuhrt wird,” Annual Review of Physical Chemistry, vol. 72, pp. 497–4508, 1847. [2] A. K. Kelmans and V. M. Chelnokov, “A certain polynomial of a graph and graphs with an extremal number of trees,” Journal of Combinatorial Theory B, vol. 16, pp. 197–214, 1974. In particular, In particular, 𝜏(𝐾3 ⊕𝐾𝑛,𝑛) = 25 × 36𝑛−5 × 𝑛6𝑛−2; 𝑛≥1. (43) [3] G. A. Cayley, “A theorm on trees,” Quarterly Journal of Mathe- matics, vol. 23, pp. 276–378, 1889. [4] L. Clark, “On the enumeration of spanning trees of the complete multipartite graph,” Bulletin of the Institute of Combinatorics and its Applications, vol. 38, pp. 50–60, 2003. Theorem 13. For 𝑛, 𝑚≥1, we have d d 1 1 ⋅⋅⋅ 1 2𝑛2 + 𝑛(7𝑚+ 1) + 3𝑚2 + 2𝑚 𝑛+ 2𝑚 ) ) ) )𝑛×𝑛 ) ) ) ) 2 × (3𝑚+ 𝑛) (2𝑚+ 𝑛)𝑚−1 × ( 𝑛−𝑚 𝑛+ 3𝑚) 𝑛 det ( ( ( ( 2𝑛2 + 𝑛(7𝑚+ 1) + 3𝑚2 −𝑚 𝑛−𝑚 1 ⋅⋅⋅ 1 1 d d ... ... d d 1 1 ⋅⋅⋅ 1 2𝑛2 + 𝑛(7𝑚+ 1) + 3𝑚2 −𝑚 𝑛−𝑚 ) ) ) )𝑛×𝑛 . (41) 24 = (3𝑚+ 𝑛)2(2𝑚+ 𝑛)2𝑚−2 9(𝑚+ 𝑛)2 × (𝑛+ 2𝑚 𝑛+ 3𝑚) 2𝑛( ( ( ( det ( ( ( ( 2𝑛2 + 𝑛(7𝑚+ 1) + 3𝑚2 + 2𝑚 𝑛+ 2𝑚 1 ⋅⋅⋅ 1 1 d d ... ... d d 1 1 ⋅⋅⋅ 1 2𝑛2 + 𝑛(7𝑚+ 1) + 3𝑚2 + 2𝑚 𝑛+ 2𝑚 ) ) ) )𝑛×𝑛 ) ) ) ) 2 × (3𝑚+ 𝑛) (2𝑚+ 𝑛)𝑚−1 ( ( 2𝑛2 + 𝑛(7𝑚+ 1) + 3𝑚2 + 2𝑚 𝑛+ 2𝑚 1 ⋅⋅⋅ 1 1 d d ... ... d d 1 1 ⋅⋅⋅ 1 2𝑛2 + 𝑛(7𝑚+ 1) + 3𝑚2 + 2𝑚 𝑛+ 2𝑚 ) ) ) )𝑛×𝑛 ) ) ) ) 2 × (3𝑚+ 𝑛) (2𝑚+ 𝑛)𝑚−1 × ( 𝑛−𝑚 𝑛+ 3𝑚) 𝑛 det ( ( ( ( 2𝑛2 + 𝑛(7𝑚+ 1) + 3𝑚2 −𝑚 𝑛−𝑚 1 ⋅⋅⋅ 1 1 d d ... ... d d 1 1 ⋅⋅⋅ 1 2𝑛2 + 𝑛(7𝑚+ 1) + 3𝑚2 −𝑚 𝑛−𝑚 ) ) ) )𝑛×𝑛 . (41) (41) Using Lemma 2, we have interesting from a mathematical (computational) perspective but is also an important measure of reliability of a network and designing electrical circuits. Some computationally hard problems such as the travelling salesman problem can be solved approximately by using spanning trees. Due to the high dependence of the network design and reliability on the graph theory, we introduced the above important theorems and lemmas and their proofs. interesting from a mathematical (computational) perspective but is also an important measure of reliability of a network and designing electrical circuits. Some computationally hard problems such as the travelling salesman problem can be solved approximately by using spanning trees. Due to the high dependence of the network design and reliability on the graph theory, we introduced the above important theorems and lemmas and their proofs. Acknowledgments The author is deeply indebted and thankful to the deanship of the scientific research for its help and to the distinct team of employees at Taibah University, Al Madinah Saudi Arabia.h (42) p y y This research work was supported by Grant No. 3070/1434. Theorem 13. For 𝑛, 𝑚≥1, we have d d 1 1 ⋅⋅⋅ 1 2𝑛2 + 𝑛(7𝑚+ 1) + 3𝑚2 −𝑚 𝑛−𝑚 ) ) ) )𝑛×𝑛 . (41) Using Lemma 2, we have 𝜏(𝐾3 ⊕𝐾𝑚,𝑛) = 1 9(𝑚+ 𝑛)2 (3𝑚+ 𝑛)2(2𝑚+ 𝑛)2𝑚−2 × (𝑛+ 2𝑚 𝑛+ 3𝑚) 2𝑛 1 (𝑛+ 3𝑚)2𝑛 × (3𝑛2 + 3𝑚2 + 9𝑛𝑚) 2 × (2𝑛2 + 3𝑚2 + 7𝑛𝑚) 2𝑛−2 × (3𝑚+ 𝑛) (2𝑚+ 𝑛)𝑚−1 × ( 𝑛−𝑚 𝑛+ 3𝑚) 𝑛 × 1 (𝑛−𝑚)𝑛 × (3𝑛2 + 3𝑚2 + 6𝑛𝑚) × (2𝑛2 + 3𝑚2 + 7𝑛𝑚) 𝑛−1 = 3(2𝑚+ 𝑛)3𝑚−3(2𝑛+ 𝑚)3𝑛−3 × (𝑚2 + 𝑛2 + 3𝑚𝑛) 2. (42) In particular, 𝜏(𝐾3 ⊕𝐾𝑛,𝑛) = 25 × 36𝑛−5 × 𝑛6𝑛−2; 𝑛≥1. (43) 7. Conclusion interesting from a mathematical (computational) perspective but is also an important measure of reliability of a network and designing electrical circuits. Some computationally hard problems such as the travelling salesman problem can be solved approximately by using spanning trees. Due to the high dependence of the network design and reliability on the graph theory, we introduced the above important theorems and lemmas and their proofs. Acknowledgments The author is deeply indebted and thankful to the deanship of the scientific research for its help and to the distinct team of employees at Taibah University, Al Madinah Saudi Arabia. This research work was supported by Grant No. 3070/1434. References [1] G. G. Kirchhoff, “Uber die Auflosung der Gleichungen, auf welche man be ider Untersuchung der Linearen Verteilung galvanischer Storme gefuhrt wird,” Annual Review of Physical Chemistry, vol. 72, pp. 497–4508, 1847. [2] A. K. Kelmans and V. M. Chelnokov, “A certain polynomial of a graph and graphs with an extremal number of trees,” Journal of Combinatorial Theory B, vol. 16, pp. 197–214, 1974. [3] G. A. Cayley, “A theorm on trees,” Quarterly Journal of Mathe- matics, vol. 23, pp. 276–378, 1889. [4] L. Clark, “On the enumeration of spanning trees of the complete multipartite graph,” Bulletin of the Institute of Combinatorics and its Applications, vol. 38, pp. 50–60, 2003. “h Journal of Applied Mathematics Journal of Applied Mathematics = (3𝑚+ 𝑛)2(2𝑚+ 𝑛)2𝑚−2 9(𝑚+ 𝑛)2 × (𝑛+ 2𝑚 𝑛+ 3𝑚) 2𝑛( ( ( ( det ( ( ( ( 2𝑛2 + 𝑛(7𝑚+ 1) + 3𝑚2 + 2𝑚 𝑛+ 2𝑚 1 ⋅⋅⋅ 1 1 d d ... ... Theorem 13. For 𝑛, 𝑚≥1, we have d d 1 2 ⋅⋅⋅⋅⋅⋅ 2 1 ⋅⋅⋅ 1 2𝑛+ 𝑚+ 1 ) ) ) ) ) ) ) ) ) ) = 1 9(𝑚+ 𝑛)2 (det ( 𝐴 𝐵 𝐵𝑇𝐶)) 2 × det ( 𝐷𝐸 𝐸𝑇𝐹) = 1 9(𝑚+ 𝑛)2 × (det 𝐴)2(det (𝐶−𝐵𝑇𝐴−1𝐵)) 2 × det 𝐷det (𝐹−𝐸𝑇𝐷−1𝐸) = (3𝑚+ 𝑛)2(2𝑚+ 𝑛)2𝑚−2 9(𝑚+ 𝑛)2 × ( ( ( ( ( ( ( det ( ( ( ( ( ( 2𝑛2 + 𝑛(7𝑚+ 1) + 3𝑚2 + 2𝑚 𝑛+ 3𝑚 𝑛+ 2𝑚 𝑛+ 3𝑚 ⋅⋅⋅ 𝑛+ 2𝑚 𝑛+ 3𝑚 𝑛+ 2𝑚 𝑛+ 3𝑚 d d ... ... d d 𝑛+ 2𝑚 𝑛+ 3𝑚 𝑛+ 2𝑚 𝑛+ 3𝑚 ⋅⋅⋅ 𝑛+ 2𝑚 𝑛+ 3𝑚 2𝑛2 + 𝑛(7𝑚+ 1) + 3𝑚2 + 2𝑚 𝑛+ 3𝑚 ) ) ) ) ) )𝑛×𝑛 ) ) ) ) ) ) ) 2 × (3𝑚+ 𝑛) (2𝑚+ 𝑛)𝑚−1 ( 2𝑛2 + 𝑛(7𝑚+ 1) + 3𝑚2 𝑚 𝑛 𝑚 𝑛 𝑚 ) × ( ( ( ( ( ( ( det ( ( ( ( ( ( 2𝑛2 + 𝑛(7𝑚+ 1) + 3𝑚2 + 2𝑚 𝑛+ 3𝑚 𝑛+ 2𝑚 𝑛+ 3𝑚 ⋅⋅⋅ 𝑛+ 2𝑚 𝑛+ 3𝑚 𝑛+ 2𝑚 𝑛+ 3𝑚 d d ... ... d d 𝑛+ 2𝑚 𝑛+ 3𝑚 𝑛+ 2𝑚 𝑛+ 3𝑚 ⋅⋅⋅ 𝑛+ 2𝑚 𝑛+ 3𝑚 2𝑛2 + 𝑛(7𝑚+ 1) + 3𝑚2 + 2𝑚 𝑛+ 3𝑚 ) ) ) ) ) )𝑛×𝑛 ) ) ) ) ) ) ) 2 × (3𝑚+ 𝑛) (2𝑚+ 𝑛) × det ( ( ( ( ( ( 2𝑛2 + 𝑛(7𝑚+ 1) + 3𝑚2 −𝑚 𝑛+ 3𝑚 𝑛−𝑚 𝑛+ 3𝑚 ⋅⋅⋅ 𝑛−𝑚 𝑛+ 3𝑚 𝑛−𝑚 𝑛+ 3𝑚 d d ... ... d d 𝑛−𝑚 𝑛+ 3𝑚 𝑛−𝑚 𝑛+ 3𝑚 ⋅⋅⋅ 𝑛−𝑚 𝑛+ 3𝑚 2𝑛2 + 𝑛(7𝑚+ 1) + 3𝑚2 −𝑚 𝑛+ 3𝑚 ) ) ) ) ) )𝑛×𝑛 24 Journal of Applied Mathematics = (3𝑚+ 𝑛)2(2𝑚+ 𝑛)2𝑚−2 9(𝑚+ 𝑛)2 × (𝑛+ 2𝑚 𝑛+ 3𝑚) 2𝑛( ( ( ( det ( ( ( ( 2𝑛2 + 𝑛(7𝑚+ 1) + 3𝑚2 + 2𝑚 𝑛+ 2𝑚 1 ⋅⋅⋅ 1 1 d d ... ... d d 1 1 ⋅⋅⋅ 1 2𝑛2 + 𝑛(7𝑚+ 1) + 3𝑚2 + 2𝑚 𝑛+ 2𝑚 ) ) ) )𝑛×𝑛 ) ) ) ) 2 × (3𝑚+ 𝑛) (2𝑚+ 𝑛)𝑚−1 × ( 𝑛−𝑚 𝑛+ 3𝑚) 𝑛 det ( ( ( ( 2𝑛2 + 𝑛(7𝑚+ 1) + 3𝑚2 −𝑚 𝑛−𝑚 1 ⋅⋅⋅ 1 1 d d ... ... 7. Conclusion [5] S. N. Qiao and B. Chen, “The number of spanning trees and chains of graphs,” Applied Mathematics E-Notes, vol. 9, pp. 10– 16, 2009. The number of spanning trees 𝜏(𝐺) in graphs (networks) is an important invariant. The evaluation of this number is not only 25 Journal of Applied Mathematics Journal of Applied Mathematics [6] J. Sedl´aˇcek, “Lucas numbers in graph theory,” in Mathematics (Geometry and Graph Theory), pp. 111–115, Univerzita Karlova, Prague, Czech Republic, 1970. [7] J. Sedlacek, “On the skeleton of a graph or digraph,” in Combinatorial Structures and Their Applications, R. Guy, M. Hanani, N. Saver, and J. Schonheim, Eds., pp. 387–391, Gordon and Breach, New York, NY, USA, 1970. [8] F. T. Boesch and Z. R. Bogdanowicz, “The number of spanning trees in a Prism,” International Journal of Computer Mathemat- ics, vol. 21, pp. 229–243, 1987. [9] F. T. Boesch and H. Prodinger, “Spanning tree formulas and Chebyshev polynomials,” Graphs and Combinatorics, vol. 2, no. 3, pp. 191–200, 1986. [10] S. N. Daoud, “Chebyshev polynomials and spanning tree formulas,” International Journal of Mathematical Combinatorics, vol. 4, pp. 68–79, 2013. [11] M. Marcus, A Servy of Matrix Theory and Matrix Inequalities, Allyn and Bacon, Boston, Mass, USA, 1964. [12] J. L. Gross and T. W. Tucker, Topological Graph Theory, John Wiley & Sons, New York, Ny, USA, 1987. [13] R. Balakrishnan and K. Ranganathan, A textbook of Graph Theory, Springer, New York, NY, USA, 2000.
https://openalex.org/W4386289887
https://link.springer.com/content/pdf/10.1007/s43681-023-00333-1.pdf
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Lustre and shadows: unveiling the gaps in South African University plagiarism policies amidst the emergence of AI-generated content
AI and ethics
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AI and Ethics https://doi.org/10.1007/s43681-023-00333-1 AI and Ethics https://doi.org/10.1007/s43681-023-00333-1 AI and Ethics https://doi.org/10.1007/s43681-023-00333-1 ORIGINAL RESEARCH Abstract In recent years, artificial intelligence (AI) has become a key technology in the field of academic integrity. However, there is a lack of a comprehensive understanding of the legal dimensions of plagiarism in the context of AI. In this study, a theo- retical framework that combines the social construction of technology and the legal dimension of plagiarism was used to explore the current construction of plagiarism in South African university plagiarism policies. This study aims to highlight the inadequacy of current plagiarism policies, which primarily focus on the act of copying from others and emphasize the need for a broader perspective that addresses the challenges posed by artificial intelligence in academic integrity in the era of AI-generated content. The author used confirming sampling and data saturation was reached with a sample of ten university plagiarism policies. The findings revealed an inadequacy of the policies on the coverage of AI-generated content and there- fore justifying the need to redefine plagiarism in the context of the artificial intelligence revolution. The author concludes by redefining plagiarism and justifying the utility of the recommended definition. Keywords  University plagiarism policies · Plagiarism · AI-generated content · South Africa Lustre and shadows: unveiling the gaps in South African University plagiarism policies amidst the emergence of AI‑generated content Kudzayi Savious Tarisayi1 Received: 21 June 2023 / Accepted: 16 August 2023 © The Author(s) 2023 1 Curriculum Studies, Stellenbosch University, Stellenbosch, South Africa * Kudzayi Savious Tarisayi kudzayit@gmail.com 2  Theoretical framework: redefining plagiarism in the context of artificial intelligence This discord echoes past responses to new technologies like the calculator. The question remains whether AI constitutes plagiarism and if current policies suffice. Analyzing pla- giarism policies of ten South African universities, this arti- cle argues AI raises integrity concerns but likely does not qualify as plagiarism under current definitions. This study on redefining plagiarism in the context of AI utilized a theoretical framework that combines two key per- spectives: the social construction of technology and legal dimensions of plagiarism. This framework will provide a comprehensive understanding of the complex interplay between technology, societal norms, and the legal implica- tions associated with plagiarism in the era of AI. The social construction of technology perspective emphasizes the mutually shaping relationship between society and technol- ogy. The social construction of technology is a theory within the field of Science and Technology Studies that explains how social factors influence the development of technology [1]. It emphasizes the importance of social context and cul- tural values in shaping technological design and innovation [1, 7]. In this study, this perspective helped analyze how AI, as a technological innovation, influences the conceptualiza- tion of plagiarism and the development of university pla- giarism policies. By examining the social processes through which AI technologies are adopted, used, and regulated, this framework will shed light on the evolving nature of plagia- rism in response to AI advancements. The legal dimensions of plagiarism encompass the legal framework and policies that define and address plagiarism [3]. This aspect of the framework explores the existing South African university plagiarism policies to examine how they define plagiarism within the context of AI. It also helps analyze the legal lan- guage, provisions, and interpretations within these policies to determine their adequacy in addressing the challenges posed by AI-generated content. Additionally, there is con- sideration of copyright laws, intellectual property rights, and fair use doctrines, which underpin the legal ramifications associated with plagiarism and AI. By integrating these two theoretical perspectives, the study provides a holistic under- standing of how the societal and legal aspects of plagiarism intersect with the technological advancements of AI. This framework enabled a comprehensive analysis of the sample of university plagiarism policies in South Africa, exploring how they currently define plagiarism in relation to AI and identifying potential gaps and limitations in addressing this emerging issue. 1  Introduction guide institutional problems, but current ones lack AI speci- ficity, necessitating comprehensive policies. The arrival of artificial intelligence (AI) in academia, spe- cifically ChatGPT, has elicited varying reactions. Tlili et al. [8] explain that as an advanced AI application, ChatGPT has gained widespread attention globally. Views are mixed on AI’s role in South African higher education. These reactions mirror previous responses to technological advances like the internet and calculators. Just as Socrates questioned writ- ing's impact millennia ago, today's AI scepticism continues an intergenerational discussion on technology's influence. Arguments against AI have focused on implications for pla- giarism and integrity. This analysis of university plagiarism policies contends they require redefinition in light of AI. Kashkur et al. [9] note that as plagiarism has spread, detec- tion methods must adapt. This need is greater with AI. Most tools cannot detect AI content, blurring ethical boundaries. Previously robust policies seem inadequate now. Policies i This analysis explores plagiarism's nature, impacts, and prevention strategies in South African university policies. It covers traditional manifestations like copying, copyright infringement, and paraphrasing without attribution. How- ever, AI content generation tests these definitions. With accessible AI tools, reliance on copying as the sole plagia- rism criterion overlooks AI’s nuances. AI can create original text undetectable to current methods. The definition needs expansion to address emerging challenges. Merkel [4] highlights policies as critical plagiarism refer- ences for students and faculty. However, some argue policies should educate rather than police students. Clarity is essen- tial for comprehension. They must provide meaningful guid- ance amidst AI. Policies uphold integrity and ethics by ban- ning plagiarism. Their rules promote originality and proper citation, communicating expectations. This fosters commit- ment to integrity and deep appreciation for honesty and attri- bution. However, AI has rendered some policies inadequate, necessitating updates for the changing landscape. Views on AI in academia vary. While some celebrate its potential, many critique its threat to integrity, like Chom- sky's denouncement of ChatGPT as “high-tech plagiarism.” (0121 3456789) 3 3456789) 3 AI and Ethics 2  Theoretical framework: redefining plagiarism in the context of artificial intelligence It also provides insights into the implica- tions of the legal dimensions of plagiarism for the develop- ment of more effective policies and practices that promote academic integrity in the context of AI. Overall, this theo- retical framework contributed to a nuanced understanding of the challenges posed by AI in redefining plagiarism and the necessary adaptations that university policies need to f 3  Research methodology In this section, the author presents the definitions of pla- giarism according to the sampled 10 university policies. The section further unpacks the policies in the light of the adequacy to cover the use of AI-generated content. The aim of the study was to justify the redefining of pla- giarism in South African university plagiarism policies. giarism in South African university plagiarism policies. South Africa has 26 public universities and each of these has a plagiarism policy. Therefore, the population for this study was 26 university plagiarism policies. The author used confirming and disconfirming sampling in this study. The major factor that was considered in the con- firming sampling was a plagiarism policy’s definition of plagiarism. Moser and Korstjens [5, p. 10] state “confirm- ing and disconfirming cases sampling supports checking or challenging emerging trends or patterns in the data.” This sampling approach aims to ensure that the chosen participants possess the necessary knowledge, experience, or attributes to provide valuable and relevant insights to the study. The advantage of criterion sampling is that it allows researchers to focus on specific characteristics or qualities that are of interest to the study. By selecting participants who possess these attributes, researchers can gather in-depth and meaningful data that aligns with their research objectives. The author used confirming sampling and, data saturation was reached with a sample of 10 pla- giarism policies. The sampled universities were Univer- sity of Cape Town (UCT), Rhodes University; University of KwaZulu-Natal (UKZN); University of South Africa (UNISA); University of Johannesburg; Cape Peninsula University of Technology (CPUT); Stellenbosch Uni- versity; Central University of Technology; University of Pretoria and University of Venda. Moser and Korstjens [5], p. 11) explain “Data saturation means the collection of qualitative data to the point where a sense of closure is attained because new data yield redundant information. Data saturation is reached when no new analytical infor- mation arises anymore, and the study provides maximum information on the phenomenon.” The author utilized pseudonyms for all the universities that were included in this analysis. 3  Research methodology The University of Pretoria policy elaborates, "Plagiarism is the presentation of someone else’s work, words, images, ideas, opinions, discoveries, artwork, music, recordings or computer-generated work (including circuitry, computer pro- grams or software, websites, the Internet or other electronic resources) whether published or not, as one’s own work, or alternatively appropriating the work, words, images, ideas, opinions, discoveries, artwork, music, recordings or computer-generated work (including circuitry, computer programs or software, websites, the Internet or other elec- tronic resource) of others, without properly acknowledging the source" (University of Pretoria (2019, p. 3). The Stellenbosch University policy states, "Plagiarism: The use of the ideas or material of others without acknowl- edgement, or the re-use of one’s own previously evaluated or published material without acknowledgement (self-pla- giarism)" (Stellenbosch University, 2016, p. 2). The University of Cape Town policy states, "Plagiarism is using someone else’s ideas or words and presenting them as if they are your own. It is therefore a form of academic cheating, stealing or deception" (University of Cape Town, 2014, p. 1). The University of Venda policy states, "Plagiarism is “the act of taking another person's writing, conversation, song, or even idea and passing it off as your own. This includes information from web pages, books, songs, television shows, email messages, interviews, articles, artworks or any other medium" (University of Venda, n.d., p. 1). The Rhodes University policy states "Plagiarism, in an academic, university context, may be defined as taking and using the ideas, writings, works or inventions of another, from any textual or internet-based source, as if they were one’s own" (Rhodes University, 2008, p. 3). The University of KwaZulu-Natal policy states, "Actions constituting plagiarism refer to, but are not limited to: Pre- senting the ideas of another as if they are your own; Rep- resenting the words or works of another as they were your own; Utilisation of the ideas, words or work of another with- out appropriate acknowledgement" (University of Kwazulu- Natal, 2014, p. 2). 1.1  Origins of plagiarism The word "plagiarism" is believed to have originated from the Latin word "plagiarius," which means "kidnapper" or "abductor" (Online Etymology Dictionary, 2023). Plagia- rism traces its origins to the Latin word "plagiarius," which translates to kidnapper. The term emerged in the English language in 1621, primarily used to describe the theft of someone else's words. The word evolved from "plagiarius" to "plagiary," denoting a literary thief or plagiarist, before morphing into its current form, "plagiarism." This linguistic evolution reflects the act's negative connotations: the theft of someone else's intellectual property. Essentially, the term "plagiarism" in the seventeenth century English language described the act of literary theft. This seventeenth century can be argued to be still central in most university plagia- rism policies as the act of plagiarism is constructed as theft. Today, it is commonly used to describe the act of using someone else's work without proper attribution, whether it be written, visual, or auditory. The first English copyright law, established in 1709, aimed to protect the rights of pub- lishers and authors against unauthorized printing and piracy Bhattathiripad [11]. However, as the concept of author's rights evolved, it became imperative to address plagiarism to safeguard the rights of individuals today. According to Bhattathiripad [11], in the first English copyright law there was much to do with protecting the rights of publishers against book piracy as it did with protecting the author's rights against unscrupulous printers, but author's rights developed very quickly. James Boswell, better known as Samuel Johnson's biographer, was a lawyer who argued one of the most important cases over how long copyrights lasted for an author and his or her heirs (it was twenty-one years at the time) Bhattathiripad [11]. Additionally, the etymology of plagiarism underscores its central theme: unauthorized appropriation of another's work. From its Latin roots signify- ing kidnapping to its modern-day implications in copyright infringement and academic dishonesty, the term carries sig- nificant weight across various spheres—literary, academic, or professional. As technology continues to evolve, under- standing and combating new forms of plagiarism will remain a crucial task for preserving intellectual integrity. 1 3 3 AI and Ethics 5.1  Educational approach The plagiarism policies of UCT, Rhodes, UKZN, and Unisa emphasize "presenting someone else's work/ideas as one's own" or similar phrasing. This language assumes the original source is human. AI systems are not human, so it could be debated whether passing off AI-generated content as one's own would technically constitute plagiarism under these definitions. The University of Johannesburg policy stands out because it defines plagiarism as "presenting other people's ideas or material as one's own when they are not one's own." This does not assume the source has to be human. The phrase "when they are not one's own" leaves room to interpret AI-generated content as falling under this definition of plagiarism. The author considers the CPUT policy more far-reaching because it includes "copying from print or electronic sources into one's own work." This encompasses online and digital sources, which could include be argued to include AI systems. The Rhodes University policy states "Departments need to acknowledge the importance of their own role in students’ acquisition of academic discourse and are responsible for taking active steps to provide students with an explana- tion as to why, as well as how, sources may be used and cited in building academic knowledge" (Rhodes Univer- sity, 2008, p. 4). This reflects an educational approach focused on teaching students proper citation practices. The UKZN policy mentions "Prevention of plagiarism requires attention to opportunities for education and awareness of plagiarism and information about this policy including mechanisms and procedures for detection" (University of KwaZulu-Natal, 2014, p. 7). It emphasizes plagiarism education and awareness. The educational approach can be considered more comprehensive and supportive for students' academic development especially in the era of AI. By providing resources, tips, and guidance on proper citation practices, this policy equips students with the nec- essary skills to engage in academic writing with integrity. It recognizes that students may unintentionally commit plagiarism due to a lack of knowledge or understanding, and it seeks to address this through education rather than punitive measures alone. Furthermore, an educational approach acknowledges that plagiarism is a multifaceted issue that extends beyond mere rule breaking. It recog- nizes that students can benefit from a deeper understanding of academic integrity, critical thinking, and responsible While the other policies do not seem to explicitly cover AI-generated content, the general principles of properly acknowledging sources and not misrepresenting authorship would likely still apply in practice. 4.1  Presentation of findings Based on the analysis of the ten sampled university plagiarism policies, two main themes can be identified regarding the conceptualization and coverage of plagia- rism in the context of AI-generated content. The author utilizes these themes to argue that the current university policies are inadequate in the era of AI. The University of South Africa policy states "The appro- priation of another's work, whether intentionally or unin- tentionally, without proper acknowledgement" (University of South Africa, 2005, p. 2). The Central University of Technology policy states "Plagiarism is the appropriation of another person’s ideas, text, theories, opinions, illustrations, creations or work 1 3 AI and Ethics 5  Educational approach vs. policing approach without properly acknowledging the original source and having obtained permission to use such information or material" (Central University of Technology, 2016, p. 1). The University of Johannesburg states "Plagiarism is passing off ideas however expressed, including in the form of phrases, words, images, artefacts, sounds, or other intel- lectual or artistic outputs, as one's own when they are not one's own; or such passing off, as an original contribution, of ideas that are one's own but have been expressed on a previous occasion for assessment by any academic institu- tion or in any published form, without acknowledgement of the previous expression" (University of Johannesburg, 2013, p. 3). The second theme revolves around the approach taken by the plagiarism policies, specifically in terms of their ori- entation toward either education or policing. Leung and Cheng [10] argue that there are two approaches to plagia- rism policies: educational and policing. The educational approach to plagiarism policies focuses on teaching stu- dents about plagiarism, its consequences, and how to avoid it. It aims to foster a deeper understanding of academic integrity and ethical writing practices. This approach emphasizes formative assessment, promoting academic integrity, and focusing on knowledge and understanding. The policing approach to plagiarism policies involves enforcing plagiarism policies and ensuring compliance with academic integrity standards. It may involve using plagiarism detection software, imposing penalties, or con- sequences for instances of plagiarism, and policy enforce- ment. The aim is to deter students from engaging in pla- giarism through the threat of punishment. The Cape Peninsula University of Technology policy states "Plagiarism is the representation of another per- son’s ideas, research, expressions, computer code, design artefacts, or work as one’s own. Examples of plagiarism include (but are not limited to): copying from print or electronic sources into one’s own work; imitating exist- ing designs in one’s own work; copying another student’s assignment or part thereof; overuse of sources; disguising copying by substitution of wording; paraphrasing without citation" (Cape Peninsula University of Technology, 2012, p. 2). 5.1  Educational approach However, the language itself centres around human sources and does not address the complexities of AI authorship. The UJ and CPUT poli- cies come closest to a definition applicable to AI systems, though there is still room for ambiguity. Revising plagia- rism policies to directly address AI-generated content would help clarify expectations around proper attribution when leveraging these emerging technologies. 1 3 3 AI and Ethics concerns of plagiarism. The principle of legality states that individuals should have fair notice of what conduct is pro- hibited and the consequences of engaging in such conduct. This principle ensures that laws are not arbitrary or vague, and that individuals are not subjected to punishment or sanc- tions without prior knowledge of the offense. Additionally, the argument also emphasizes the importance of clear policy guidelines. Policies provide a framework for decision-mak- ing within organizations or institutions. If a particular action is prohibited by policy, it is crucial that the policy explicitly outlines the prohibition, so individuals are aware of what is expected of them and can act accordingly. Essentially, if the use of AI is to be prohibited or regulated in universities in South Africa, the policy needs to be made more explicit. Additionally, students and staff should be given fair notice of this prohibition and regulatory position. However, cur- rently the policies being relied upon can be considered an overstretching of the policy and that might expose universi- ties to litigation. Drawing on the principle of legality, it is worth noting that the underlying rationale behind this argu- ment is to safeguard individuals' rights and ensure that they are not penalized for engaging in conduct that is not clearly defined as illegal or prohibited by law or policy. By demand- ing clarity and specificity in the law and policy, individuals can be better informed about what is permitted and what is not, allowing them to conform to the established rules and regulations. Furthermore, the principle of legality also extends to the notion of due process. If a university were to take disciplinary action against a student for alleged plagia- rism involving the use of ChatGPT, it would be important to ensure that the student was given fair notice of the specific rules and regulations regarding AI usage. Without explicit policies in place, the student may argue that they were not aware that using ChatGPT in a particular manner could be considered plagiarism. 5.1  Educational approach Furthermore, the author argues that the policy should clearly state the instrument(s) that will be used to check AI-generated content. On the other hand, the flipside of the principle of legality is informed by ethics and morality. From an ethical standpoint, it can be argued that despite the absence of a clear policy on AI, individuals have a responsibility to act within the boundaries of what is morally acceptable, even in the absence of explicit guidance. It is common knowledge that one can only take ownership of content that they have created and therefore using AI- generated content goes against that long-held view. Ethical considerations often go beyond legal or policy requirements and encourage individuals to exercise good judgment and adhere to commonly accepted principles and values. While there is a plethora of AI-generated content detec- tors their performance has been under scrutiny due to lack research practices. By emphasizing growth and improve- ment, this approach encourages students to take ownership of their learning journey, develop their writing skills, and cultivate a genuine appreciation for originality and ethical scholarship. 5.2  Policing approach The UCT policy notes "Should prima facie evidence of pla- giarism exist, a formal investigation will follow" (University of Cape Town, 2012, p. 2). This indicates enforcement and investigation for policy compliance. The Unisa policy states "A student or an employee who is guilty of the infringe- ment of copyright or unethical practice will be subject to the applicable disciplinary code" (University of South Africa, 2005, p. 2). This reflects consequences for violations. While this approach aims to uphold academic integrity, it may cre- ate an environment where students are primarily driven by fear of punishment rather than a genuine understanding of the importance of originality and ethical writing practices. A more policing-oriented approach may inadvertently create an atmosphere of distrust and apprehension among students. While deterrence and enforcement are essential components of maintaining academic integrity, an overemphasis on pun- ishment without sufficient educational support may hinder the development of students' writing abilities and their understanding of plagiarism as a complex issue. In the era of AI, it is important for universities to focus more on the educational approach to plagiarism policies. As Leung and Cheng [10] argue, students need to be empow- ered with the knowledge and skills to properly cite sources into their academic work in an ethical manner. A punitive, policing approach may discourage plagiarism in the short term but does not cultivate the deeper understanding needed for proper AI attribution. An educational approach will be more effective in equipping students to utilize AI tools responsibly. 7  Recommendations Based on the analysis of the reviewed policies and the chal- lenges posed by AI-generated content, a suggested definition of plagiarism that encompasses AI-generated content could be as follows: Plagiarism, in an academic context, refers to the act of taking and using ideas, writings, works, inven- tions, or any form of intellectual or creative output, whether generated by a human or artificial intelligence, without proper attribution or acknowledgement, and presenting it as one's own original work.i This definition acknowledges that plagiarism extends beyond the traditional understanding of "someone else's work" to include any content, whether produced by humans or AI systems, that is not appropriately credited or acknowl- edged. It recognizes the unique challenges posed by AI-gen- erated content, such as ChatGPT, and emphasizes the impor- tance of proper attribution and acknowledgment in all forms of academic work. By adopting a definition that explicitly considers AI-generated content as a potential source of plagiarism, academic institutions can address the evolving landscape of content creation and ensure fair and consist- ent treatment of cases involving AI-generated content. This definition encourages responsible use of AI technologies, promotes academic integrity, and provides clear guidance for students, staff, and faculty members in identifying and avoiding plagiarism in the context of AI-generated content. In conclusion, the author reviewed a sample of plagia- rism policies in South African universities. Drawing from the reviewed plagiarism policies the authors argues that most universities in South Africa do not have a legal standing to police the use of AI content by both staff and students. Relying on the current plagiarism policies leads to several questions around the principles of legality and due process. While it can be argued that the flipside of the principle of legality entails debates around morality and ethics, there is still a need for a clear policy on the use of AI and penalties for contravention thereof. To effectively address the impact of AI on plagiarism, universities must adopt a more compre- hensive and flexible approach. Redefining plagiarism within the context of AI should encompass not only direct copy- ing but also the misuse or unethical use of AI tools. This includes instances where AI-generated content is submitted without proper attribution or when AI is used to manipulate or fabricate data. Alongside redefining plagiarism, educa- tional institutions should prioritize educating students and staff about the ethical use of AI tools. 7  Recommendations By providing guid- ance and clear policies on the responsible application of AI technologies, universities can foster a culture of academic integrity that adapts to the evolving digital landscape. The rise of AI technology poses new challenges for academic integrity and the definition of plagiarism. Current university plagiarism policies, primarily focused on copying, fail to adequately address the complexities introduced by AI. To ensure the preservation of academic integrity, it is crucial to redefine plagiarism within the context of students and staff using AI. A comprehensive approach should encompass the ethical use of AI tools and acknowledge the nuances involved in detecting AI-generated content. By adopting Acknowledgements  Not applicable. Funding  Open access funding provided by Stellenbosch University. The author did not receive any funding for this study. Availability of data and materials  The datasets used and/or analyzed during the current study are available from the corresponding author on reasonable request. 6  Conclusions The author argues from the foregoing analysis of the current plagiarism policies at the selected universities that plagia- rism policy review should be expediated. Alternatively, AI policies need to be put in place to empower staff to engage with AI-generated content. Penalizing students using the current plagiarism policies can be viewed as contravening the principles of legality and due process. The principle of legality can be applied to the debates around the use of ChatGPT in academia, particularly in relation to issues of plagiarism. In this context, the principle suggests that aca- demic institutions should provide clear policies and guide- lines regarding the use of AI tools like ChatGPT to address While there is a plethora of AI-generated content detec- tors, their performance has been under scrutiny due to lack of consistence and reliability. Mujezinovic [6] questioned the veracity of AI content detectors such as Writer, GPTZero among others. Experiments and testing of some of these 1 3 1 3 AI and Ethics AI-content detectors have yielded discouraging results, with some being a source of comic relief. An example of a test that was carried out on the efficacy of GPTZero by Bar- see ruled that the US Constitution was written by AI (see below). Another experiment by Islam [2] revealed discrepan- cies in the AI content detection using Writer and ChatGPT classifier. Therefore, the author casts aspersions on the use of AI detector in their current state to determine the fate and ultimately the future of students. Additionally, there are sev- eral YouTube videos and online tutorials demonstrate how to fool AI cheat detectors and thus exacerbating the chal- lenge for AI detectors. Hence, it is imperative that universi- ties invest in research on the efficacy of AI detectors before unfairly penalizing students using faulty tools. Universities would have failed the due process test if they rely on faulty AI content detectors to police the use of AI in university assessments. Notable progress needs to be acknowledged in the case of the Turnitin plug-in. Other AI content detectors required users to paste or upload their content to check but Turnitin has saved academics from this routine by using a platform there are already familiar with. such a perspective, universities can adapt to the changing academic landscape and foster a culture that upholds integ- rity in the age of AI. Declarations Conflict of interest  The author declares that they have no competing interests. Open Access  This article is licensed under a Creative Commons Attri- bution 4.0 International License, which permits use, sharing, adapta- tion, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will 1 3 3 3 AI and Ethics need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. 6. Mujezinovic, D.: AI content detectors don’t work, and that’s a big problem. https://​www.​makeu​seof.​com/​ai-​conte​nt-​detec​tors-​dont-​ work/ (2023) ( ) 7. Song, J.: Ethical adaptation and legal regulation of modern tech- nology. Cultures of Science 4(3), 169–178 (2021). https://​doi.​org/​ 10.​1177/​20966​08321​10530​85 6. Mujezinovic, D.: AI content detectors don’t work, and that’s a big problem. https://​www.​makeu​seof.​com/​ai-​conte​nt-​detec​tors-​dont-​ work/ (2023) References 8. Tlili, A., Shehata, B., Adarkwah, M.A., Bozkurt, A., Hickey, D.T., Huang, R., Agyemang, B.: Smart learning environments 10(15):1–24 (2023). https://​doi.​org/​10.​1186/​s40561-​023-​00237-x 1. Hall, J.: The social construction of technology. In: Relating Through Technology (Advances in Personal Relationships), pp. 31–47). Cambridge University Press, Cambridge (2020). https://​ doi.​org/​10.​1017/​97811​08629​935.​003 1. Hall, J.: The social construction of technology. In: Relating Through Technology (Advances in Personal Relationships), pp. 31–47). Cambridge University Press, Cambridge (2020). https://​ doi.​org/​10.​1017/​97811​08629​935.​003 9. Kashkur, M., Parshutin, S., Borisov, A.: Research into Plagiarism Cases and Plagiarism Detection Methods. Scientific J. Riga Tech- nical University Comput. Sci. 42(1):138–143 (2010). https://​doi.​ org/​10.​2478/​v10143-​010-​0055-1 2. Islam, M.: Are AI content detectors reliable in 2023? Meta Minds. https://​www.​linke​din.​com/​pulse/​ai-​conte​nt-​detec​tors-​relia​ble-​ 2023-​miraj​ul-​islam/ (2023) g 10. Leung, C.H., Cheng, S.C.L.: An instructional approach to practi- cal solutions for plagiarism. Univ. J. Educ. Res. 5(9), 1646–1652 (2017). https://​doi.​org/​10.​13189/​ujer.​2017.​050922 3. Kendal, E.: Ethical, legal and social implications of emerging technology (ELSIET) symposium. Bioethical Inquiry 19, 363–370 (2022). https://​doi.​org/​10.​1007/​s11673-​022-​10197-5 p g j 11. Bhattathiripad, V. P. (2014). Judiciary-Friendly Forensics of Soft- ware Copyright Infringement. Hershey, PA: IGI Global. 4. Merkel, W.: Collage of confusion: an analysis of one university’s multiple plagiarism policies. System 96, 1–11 (2020). https://​doi.​ org/​10.​1016/j.​system.​2020.​102399 Publisher's Note  Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations. Publisher's Note  Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations. 5. Moser, A., Korstjens, I.: Series: practical guidance to qualitative research. Part 3: sampling, data collection and analysis, Eur. J. Gen. Pract. 24(1), 9–18 (2018). https://​doi.​org/​10.​1080/​13814​788.​ 2017.​13750​91 1 3
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Northern goshawk inventory and monitoring technical guide
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Northern Goshawk Inventory and Monitoring Technical Guide United States Department of Agriculture Forest Service Gen. Tech. Report WO-71 July 2006 Medicine Lake Mt. Shasta Intermountain Great Basin Cascade Sierra West Coast Colorado Plateau and SW Mtns Northern Goshawk Inventory and Monitoring Technical Guide Cascade Sierra West Coast Intermountain Great Basin Colorado Plateau and SW Mtns Northern Goshawk Inventory and Monitoring Technical Guide Brian Woodbridge and Christina D. Hargis Northern Goshawk Inventory and Monitoring Design Team Brian Woodbridge Christina D. Hargis Richard T. Reynolds James A. Baldwin Gregory D. Hayward Kimberly Titus Alan Franklin Sarah R. Dewey Christopher W. Schultz Alan L. Williamson Douglas A. Boyce, Jr. John J. Keane U.S. Department of Agriculture, Forest Service, Washington Office Ecosystem Management Coordination Staff Watershed, Fish, Wildlife, Air, and Rare Plants Staff United States Department of Agriculture Forest Service Gen. Tech. Report WO-71 July 2006 Brian Woodbridge and Christina D. Hargis Northern Goshawk Inventory and Monitoring Design Team Northern Goshawk Inventory and Monitoring Design Team Richard T. Reynolds Kimberly Titus Christopher W. Schultz John J. Keane Christina D. Hargis Gregory D. Hayward Sarah R. Dewey Douglas A. Boyce, Jr. Proper citation for this document is as follows: Woodbridge, B.; Hargis, C.D. 2006. Northern goshawk inventory and monitoring technical guide. Gen. Tech. Rep. WO-71. Washington, DC: U.S. Department of Agriculture, Forest Service. 80 p. Woodbridge, B.; Hargis, C.D. 2006. Northern goshawk inventory and monitoring technical guide. Gen. Tech. Rep. WO-71. Washington, DC: U.S. Department of Agriculture, Forest Service. 80 p. Woodbridge, B.; Hargis, C.D. 2006. Northern goshawk inventory and monitoring technical guide. Gen. Tech. Rep. WO-71. Washington, DC: U.S. Department of Agriculture, Forest Service. 80 p. Cover Photo: The concept of bioregional monitoring is conveyed through three photos superimposed on a digital elevation model of the Western United States, including portions of the Pacific Coast and Intermountain Great Basin bioregions. The overlaid images depict three levels of the bioregional monitoring design: a sample of contiguous PSUs in northern California (top), a PSU with call point transect lines (middle), and a northern goshawk nest (bottom). Photo credit: Brian Woodbridge. Composite image designed by Dave LaPlante. The U.S. Department of Agriculture (USDA) prohibits discrimination in all its programs and activities on the basis of race, color, national origin, age, disability, and where applicable, sex, marital status, familial status, parental status, religion, sexual orientation, genetic information, political beliefs, reprisal, or because all or part of an individual’s income is derived from any public assistance program. (Not all prohibited bases apply to all programs.) Persons with disabilities who require alternative means for communication of program information (Braille, large print, audiotape, etc.) should contact USDA’s TARGET Center at (202) 720-2600 (voice and TDD). To file a complaint of discrimination, write USDA, Director, Office of Civil Rights, 1400 Independence Avenue, S.W., Washington, D.C. 20250-9410, or call (800) 795-3272 (voice) or (202) 720-6382 (TDD). USDA is an equal opportunity provider and employer. The U.S. Department of Agriculture (USDA) prohibits discrimination in all its programs and activities on the basis of race, color, national origin, age, disability, and where applicable, sex, marital status, familial status, parental status, religion, sexual orientation, genetic information, political beliefs, reprisal, or because all or part of an individual’s income is derived from any public assistance program. Northern Goshawk Inventory and Monitoring Design Team (Not all prohibited bases apply to all programs.) Persons with disabilities who require alternative means for communication of program information (Braille, large print, audiotape, etc.) should contact USDA’s TARGET Center at (202) 720-2600 (voice and TDD). To file a complaint of discrimination, write USDA, Director, Office of Civil Rights, 1400 Independence Avenue, S.W., Washington, D.C. 20250-9410, or call (800) 795-3272 (voice) or (202) 720-6382 (TDD). USDA is an equal opportunity provider and employer. The U.S. Department of Agriculture (USDA) prohibits discrimination in all its programs and activities on the basis of race, color, national origin, age, disability, and where applicable, sex, marital status, familial status, parental status, religion, sexual orientation, genetic information, political beliefs, reprisal, or because all or part of an individual’s income is derived from any public assistance program. (Not all prohibited bases apply to all programs.) Persons with disabilities who require alternative means for communication of program information (Braille, large print, audiotape, etc.) should contact USDA’s TARGET Center at (202) 720-2600 (voice and TDD). To file a complaint of discrimination, write USDA, Director, Office of Civil Rights, 1400 Independence Avenue, S.W., Washington, D.C. 20250-9410, or call (800) 795-3272 (voice) or (202) 720-6382 (TDD). USDA is an equal opportunity provider and employer. Acknowledgments We gratefully acknowledge the previous work of several individuals in the realm of goshawk monitoring; their ideas, field work, and publications are the basis of this technical guide. In particular, we acknowledge the contributions made by S.R. Dewey, S.M. Joy, J.J. Keane, P.L. Kennedy, V. Penteriani, R.T. Reynolds, and D.W. Stahlecker. The bioregional monitoring design presented in chapter 2 was created by the North- ern Goshawk Inventory and Monitoring Design Team, whose members are listed on the title page of this technical guide. We give special recognition to J.A. Baldwin for contributing substantial time toward developing the bioregional design and preparing all the statistical text in chapter 2. We are grateful to D. LaPlante and B. Allison for spatial analyses of primary sampling unit (PSU) size and for preparing figures and to J. Wilson and H. Wang for preparing the figure in Appendix C. We thank the follow- ing individuals who substantially improved the quality of this technical guide through their review of earlier versions: D.E. Andersen, P.H. Geissler, T.A. Max, A.R. Olson, M.G. Raphael, L.F. Ruggiero, H.T. Schreuder, and J.R. Squires. Northern Goshawk Inventory and Monitoring Technical Guide Northern Goshawk Inventory and Monitoring Technical Guide Authors Brian Woodbridge is supervisor of the Forest Resources Branch, U.S. Fish & Wildlife Service, Yreka, CA. Christina D. Hargis (name changed to Christina D. Vojta) is a wildlife ecologist, Watershed, Fish, Wildlife, Air, and Rare Plants Staff, USDA Forest Service, Washington Office, Washington, DC. Christina D. Hargis (name changed to Christina D. Vojta) is a wildlife ecologist, Watershed, Fish, Wildlife, Air, and Rare Plants Staff, USDA Forest Service, Washington Office, Washington, DC. iii iii Northern Goshawk Inventory and Monitoring Technical Guide iv iv Contents 1.1 Overview This technical guide provides information on all aspects of inventory and monitoring related to the northern goshawk (Accipiter gentilis) and is to be used by the U.S. De- partment of Agriculture (USDA) Forest Service consistent with national direction, lo- cal priorities, and available funding, and also by interested partners and collaborators. When the protocols described in this technical guide are implemented, the resulting data will meet standards of the Data Quality Act and, therefore, will be legally and scientifically defensible and consistent with data collected elsewhere using the same protocols. The technical guide is divided into three chapters: an overview, a bioregional monitoring design, and a description of inventory and survey methodologies. The technical guide was written for bioregional monitoring coordinators and their survey teams, biologists at forest and district levels, and any other agencies and organizations interested in northern goshawk inventory and monitoring activities. This introductory chapter provides an overview of the technical guide and describes the business needs that motivate the USDA Forest Service to inventory and monitor goshawks. This chapter also describes the roles and responsibilities of implementing this technical guide and provides the context of goshawk monitoring in relation to other Federal inventory and monitoring programs. Contents Acknowledgments.......................................................................................iii Contents..........................................................................................................v Chapter 1. Overview..................................................................................1-1 1.1 Overview...................................................................................................... 1-1 1.2 Background and Business Needs................................................................. 1-1 1.3 Key Concepts................................................................................................ 1-3 1.4 Roles and Responsibilities............................................................................ 1-5 1.4.1 National Responsibilities...........................................................1-5 1.4.2 Regional Responsibilities...........................................................1-5 1.4.3 Forest Responsibilities...............................................................1-5 1.5 Relationships to Other Federal Inventory and Monitoring Programs.......... 1-6 1.5.1 Forest Service Programs............................................................1-6 1.5.2 Programs in Other Federal Agencies..........................................1-6 1.6 Quality Control and Assurance..................................................................... 1-7 1.7 Change Management.................................................................................... 1-7 Chapter 2. Bioregional Monitoring Design..........................................2-1 2.1 Objective....................................................................................................... 2-1 2.2 Planning and Design..................................................................................... 2-3 2.2.1 Goshawk Natural History Relevant to the Bioregional Sampling Design................................................................................. 2-3 2.2.2 Description and Rationale for Monitoring Design............................. 2-5 2.3 Data Collection........................................................................................... 2-14 2.3.1 Data Collection Methods and Rationale........................................... 2-14 2.3.2 Quality Control/Quality Assurance................................................... 2-17 2.3.3 Data Entry Forms.............................................................................. 2-19 2.3.4 Survey Logistics................................................................................ 2-19 2.4 Data Storage and Management................................................................... 2-20 2.5 Data Analysis.............................................................................................. 2-21 2.5.1 Estimating the Bioregional Frequency of Occurrence of Goshawks..................................................................................... 2-21 2.5.2 Assessing Changes in Goshawk Frequency of Occurrence Over Time......................................................................................... 2-22 2.5.3 Evaluating Change in Occupancy Rate in Relation to Change in Habitat or Other Environmental Variables.................................... 2-23 Northern Goshawk Inventory and Monitoring Technical Guide Northern Goshawk Inventory and Monitoring Technical Guide 2.6 Reporting.................................................................................................... 2-24 2.6.1 Expected Reports.............................................................................. 2-24 2.6.2 Reporting Schedule........................................................................... 2-24 Chapter 3. Goshawk Survey Techniques................................................ 3-1 3.1 Objectives..................................................................................................... 3-1 3.2 Planning and Design..................................................................................... 3-1 3.2.1 Aspects of Goshawk Natural History Related to Survey Methodology...........................................................................................3-1 3.2.2 Sampling Designs............................................................................... 3-5 3.3 Data Collection............................................................................................. 3-6 3.3.1 Survey Methods.................................................................................. 3-6 3.3.2 Quality Control/Quality Assurance................................................... 3-18 3.4. Data Storage.............................................................................................. 3-19 3.5. Data Analysis and Interpretation of Survey Results.................................. 3-19 3.5.1 Presence........................................................................................... 3-20 3.5.2 Occupancy........................................................................................ 3-20 3.5.3 Breeding........................................................................................... 3-21 3.5.4 Successful Nest................................................................................ 3-22 3.5.5 Fledging Rate................................................................................... 3-22 3.6 Survey Applications................................................................................... 3-23 3.6.1 Territory Monitoring Application..................................................... 3-23 3.6.2 Small Area Survey Application......................................................... 3-25 3.6.3 Large Area Survey Application......................................................... 3-26 3.7 Reporting.................................................................................................... 3-27 Appendix A. Literature Cited....................................................................... A-1 Appendix B. Interactive Spreadsheet for Determining Bioregional Sample Size......................................................B-1 Appendix C. Sample PSU Map....................................................................C-1 Appendix D. Guidelines for Constructing Field Data Collection Forms.................................................................... D-1 vi vi Northern Goshawk Inventory and Monitoring Technical Guide 1.2 Background and Business Needs The northern goshawk has attracted substantial interest over the past two decades because management activities in forest environments have the potential to affect nesting habitat and, hence, population levels of this species. Goshawks tend to nest in mature forests (conifer in the West, deciduous in the East), building large nests that are used by the original pair or successors for many years (Squires and Reynolds 1997). A variety of forest types and structural stages are used as foraging habitat, but the important role of mature forests as long-term nesting sites has placed consider- able attention on the goshawk. The goshawk has been designated a sensitive species in six of the eight USDA Forest Service administrative regions within its geographic range. Because of sensi- tive species status, 71 national forests are required by USDA Forest Service policy (Forest Service Manual [FSM] 2670 and 2672) (USDA Forest Service 1995, USDA Forest Service 1991) to evaluate the effects of proposed management actions on 1-1 1-1 Northern Goshawk Inventory and Monitoring Technical Guide goshawks and document the findings in a biological evaluation that is specific to each proposed action. Any decisions made by a line officer “must not result in loss of species viability or create significant trends toward Federal listing” (FSM 2670.32). Forest supervisors are given the responsibility to “determine distribution, status, and trend of threatened, endangered, proposed, and sensitive species and their habitat on Forest lands” (FSM 2670.45). Regional foresters are to identify sensitive species that qualify for conservation agreements (FSM 2672.12). In addition to sensitive species status, 53 national forests (as of 2004) have designated the goshawk as a “management indicator species” (MIS) in their land and resource management plans developed under the National Forest Management Act. The combined designation of the goshawk as both a sensitive species and an MIS has resulted in a need for information on the status and trend of goshawk populations and habitats throughout its range. The broad geographic distribution of the goshawk has resulted in a need for greater consistency in how this information is collected. The goshawk has also received attention from members of the public. Environ- mental organizations submitted petitions in 1991 (Babbitt et al. 1991, Silver et al. 1991) and in 1997 (USFWS 1998a) to list the northern goshawk as threatened or endangered in the Western United States. The U.S. Northern Goshawk Inventory and Monitoring Technical Guide 1.2 Background and Business Needs Fish & Wildlife Service (USFWS) concluded that listing was not warranted, based on the best available information (USFWS 1996, 1998a).The status review team that assembled information for this finding, however, noted that information was not cohesive and they made several recommendations for acquiring more information on population and habitat trends. One of the recommendations was that “land managers should improve inventory and monitoring of goshawk populations. Improvements should include a standardized protocol to conduct goshawk surveys.” (USFWS 1998b). The Queen Charlotte goshawk, a recognized subspecies occurring in southeast Alaska, was petitioned for listing in 1994. The USFWS concluded that listing was not warranted (USFWS 1997), but interest remains high regarding conservation of this subspecies. The northern goshawk is also protected under the Migratory Bird Treaty Act. Executive Order 13186 of 2001 clarified responsibilities of Federal agencies regarding migratory bird conservation, and these responsibilities include inventory and monitoring. In summary, the USDA Forest Service needs information on status and trends of northern goshawk populations and habitats for the following reasons: In summary, the USDA Forest Service needs information on status and trends of northern goshawk populations and habitats for the following reasons: • The goshawk is a sensitive species. Forest Service Manual (FSM) 2670.45 (USDA Forest Service 1995) requires forest supervisors to collect information on sensitive species in order to determine when change in management is warranted. • Habitat and population information is needed by national forests that have designated the goshawk as an MIS. 1-2 Northern Goshawk Inventory and Monitoring Technical Guide • The USFWS may receive new petitions to list the goshawk and will call on the USDA Forest Service again for information on status and trends of populations and habitats. • Many public entities, including environmental groups and forest product industries, will continue to ask the USDA Forest Service for information on the status of goshawks on National Forest System lands, because this species, along with mature forests, remains a topic of interest. Most national forests have partial information on goshawk territories and suitable habitat, and some national forests also have multiyear data on goshawk nest activ- ity. Standardized field protocol for goshawk nest area surveys have been published (Dewey et al. 2003, Joy et al. 1994, Kennedy and Stahlecker 1993, Penteriani 1999) and USDA Forest Service biologists frequently use them. 1.2 Background and Business Needs Inventory and monitoring data, however, usually are not comparable across forests because of different defini- tions for nest and territory occupancy, different levels of survey efforts, and different definitions of habitat. Furthermore, a lack of sampling design, either within a given forest or across administrative units, precludes the ability to evaluate trends in either populations or habitats. Consequently, most existing information is limited to the spa- tial occurrence of nests and a rough estimate of territory size and distribution. To obtain consistent, reliable information on the status and trend of goshawk populations and habitats, USDA Forest Service biologists, research scientists, and members of the academic community identified a need for the following: • Bioregional population monitoring in relation to habitat changes. • Forest-level monitoring of the local effects of management actions. • Inventory and survey standards that are based on published field protocol. This technical guide was developed to fulfill these information needs. Northern Goshawk Inventory and Monitoring Technical Guide 1.3 Key Concepts The term “protocol” is often used to refer to standards for collecting field data. The Inventory and Monitoring Issue Team of the USDA Forest Service has recommended a broader interpretation of protocols to include all aspects of an inventory or monitoring plan: sampling design, data collection, data analysis, and reporting. This technical guide follows this recommendation and includes all of these topics in the chapters that follow. The term “procedures” is used for describing steps within a specific pro- tocol. For example, the procedures for establishing a sampling frame and setting up strata are specific steps in the sampling design protocol. Two key concepts related to goshawk monitoring is the notion that goshawks maintain territories and that territoriality influences, in part, the spacing of goshawk 1-3 1-3 breeding activity and the use of resources. Ecologically, the term “territory” is usually defined as an area that is defended, but since defensive behavior is rarely observed, another definition is “any exclusive area” (Ricklefs 1979). The area used by goshawks for nesting and fledging of young is exclusive and is therefore a territory. Average territory size is estimated after the breeding history in an area has been established for many years. This estimation is done by determining the location of alternate nests associated with each territory, finding the geometric centroid of each cluster, and calculating the distance between clusters. A territory is said to be occupied if adult goshawks are present, but additional criteria for determining territory occupancy can be found under subheading B of section 3.5. Within an occupied territory, any given nest site can be active or inactive, depending on whether a nesting effort is currently in progress. The terms “active” and “inactive” refer to nest site status, whereas the terms “occupied” and “unoccupied” refer to territory status. The bioregional monitoring design in chapter 2 is not intended to track goshawk territories, nor does it depend on previous knowledge of territory location to be implemented. The sampling design, however, is based on the concept of territories in order to sample at a scale that is appropriate for this species. An important distinction exists between goshawk presence, as defined in the bioregional monitoring design, and territory occupancy. Goshawk presence can be determined by the detection of an individual, whereas territory occupancy requires that two or more criteria are met (section 3.5). 1.4.2 Regional Responsibilities In cooperation with other regional offices— In cooperation with other regional offices— • Identify a bioregional monitoring coordinator to oversee the bioregional monitoring program. Ensure coordination of data collection, analysis, and reporting with adjacent administrative regions that share the same bioregion • Work across administrative lines to maintain, to the extent possible, the bioregional boundaries as identified in this technical guide. • Work cooperatively with States and nongovernmental organizations to disseminate and share information regarding goshawk population and habitat trends. • Identify current status and future funding needs of the bioregional goshawk monitoring program in the region’s Inventory and Monitoring Program Plan. • Provide training to field personnel as needed for data collection, storage, analysis, and reporting. • Ensure that monitoring results are distributed to participating national forests and other monitoring collaborators in a timely fashion. 1.3 Key Concepts In most wildlife studies, however, the term “site occupancy” is used to indicate simple presence of one or more individuals in an area (Geissler and Fuller 1987). Because of the more rigorous definition of occupancy in the context of goshawk territory status, this technical guide uses “presence” as the variable of interest in the bioregional monitoring design rather than “site occupancy.” Specific criteria for determining goshawk presence are in chapter 2 under the bioregional monitoring design, whereas criteria for territory occupancy and nest activity are in chapter 3, section 3.5. A third key concept of goshawk monitoring, particularly for the bioregional monitoring design, is presence/absence. In the recent past, biologists referred to presence/absence as present/not detected, because absence cannot be absolutely determined. This term, however, confuses the state of being present or not present with the activity of either detecting or not detecting an organism. This technical guide adopts the term presence/absence with the argument that although absence cannot be determined, it can be estimated statistically using a known or estimated detection probability. More details are presented in chapter 2, but it is introduced here as a key concept of the bioregional monitoring design. 1-4 Northern Goshawk Inventory and Monitoring Technical Guide 1.4.1 National Responsibilities • Develop the Northern Goshawk Inventory and Monitoring Technical Guide and update as needed. • Ensure that data standards, data fields, and data analysis capabilities are built into the National Resource Information System (NRIS) Fauna application in order to carry out goshawk inventory and monitoring activities. • Ensure flow of information with USFWS as directed under Executive Order 13186. • Encourage cooperative efforts and partnerships with other agencies and organizations to monitor goshawks. • Assist USDA Forest Service administrative regions with attaining adequate funding for bioregional monitoring. Northern Goshawk Inventory and Monitoring Technical Guide 1.4.3 Forest Responsibilities • Contribute to the bioregional monitoring program either indirectly through funding, or with field personnel and equipment. • Conduct area inventories and project surveys using the survey protocols described in chapter 3. • Provide stewardship of the NRIS Fauna module for forest and district-level goshawk data. 1-5 Northern Goshawk Inventory and Monitoring Technical Guide 1-5 1.5.1 Forest Service Programs Before the development of this technical guide, the USDA Forest Service did not have a national protocol for northern goshawk inventories or monitoring. Monitoring has been the responsibility of individual national forests, with guidance from region- al offices. In addition, monitoring has been conducted as part of established research programs on several national forests, often funded by the national forests as adminis- trative studies. Long-term monitoring and/or in-depth research studies have occurred on the Klamath, Modoc, Beaverhead/Deerlodge, Inyo, Tahoe, Sawtooth, Targhee, Tongass, Kaibab, and Dixie National Forests. Recently, national forests in Utah, in collaboration with Brigham Young University, have undertaken several studies that address goshawk dispersal and movements (Rodriguez 2004). The Rocky Mountain Research Station has an ongoing research study of north- ern goshawks that has been in place on the Kaibab National Forest since 1991 (Reyn- olds and Joy 1998). This study has provided knowledge of goshawk life history, reproductive patterns, and detection rates that were instrumental in formulating the bioregional monitoring design (Reynolds 2002). The study also contributed to the design of a standard survey protocol that has been adopted in this technical guide (Joy et al. 1994). The goshawk bioregional design described in this technical guide relies on broad scale habitat information from the Forest Inventory and Analysis (FIA) program in order to look for correlations between broad scale habitat characteristics and gos- hawk populations. Each bioregion can also use data derived from the Common Stand Exam protocol to evaluate habitat changes. The USDA Forest Service developed a technical guide for the Multiple Species Inventory and Monitoring (MSIM) protocol. The MSIM provides a framework for collecting presence/absence data on a variety of terrestrial vertebrate species, includ- ing raptors, over broad spatial extents. The goshawk bioregional monitoring design is complementary to the MSIM because it has a similar monitoring objective and obtains data at a similar spatial scale. Northern Goshawk Inventory and Monitoring Technical Guide 1.5.2 Programs in Other Federal Agencies The U.S. Geological Survey Patuxent Wildlife Research Center has spearheaded a continent-wide Breeding Bird Survey (BBS) since 1966 (Robbins et al. 1986, Sauer et al. 2001). Although trend data are available from the BBS for many bird species, the research center has concluded that data on northern goshawks are not sufficient for determining trends, either survey-wide or for any individual state or province, 1-6 due to low detections of goshawks per survey route and low numbers of survey routes with goshawk detections. Most States and provinces have fewer than five survey routes with goshawk detections (Sauer et al. 2001). There are no other Federal pro- grams for collecting data on northern goshawk populations or habitats. 1.6 Quality Control and Assurance The inventory and monitoring protocols described in this technical guide are based on published field protocols (Joy et al. 1994, Kennedy and Stahlecker 1993). The bioregional monitoring design was designed by researchers and statisticians with substantial knowledge of goshawk ecology and principles of sampling design. The technical guide was reviewed by six qualified professionals, including four statisticians both within and outside the USDA Forest Service. The bioregional monitoring design underwent a separate peer-review and has been published (Hargis and Woodbridge 2006). Quality control and assurance for implementing the bioregional monitoring design is discussed under the heading of Data Collection in chapter 2. Northern Goshawk Inventory and Monitoring Technical Guide Northern Goshawk Inventory and Monitoring Technical Guide 2.1 Objective Information is needed on the status and trend of northern goshawk populations and their habitats to meet a variety of information needs described in chapter 1. This chapter describes a monitoring design that will enable the Forest Service and collaborating partners to (1) estimate the frequency of occurrence of territorial adult goshawks over large geographic areas; (2) assess changes in frequency of occurrence over time; and (3) determine whether changes in frequency of occurrence, if any, are associated with changes in habitat. The goal is to monitor goshawks annually into the long-term future, with analyses of change every 5 years. Goshawk populations experience some level of change in abundance from year to year due to changes in a combination of environmental factors, most notably climate and prey abundance. The USDA Forest Service is specifically interested in population changes that exceed normal fluctuations and that may be due to management-induced habitat changes. The range of normal fluctuations in goshawk abundance is currently not known, nor is the exact magnitude of change that can be detected with monitoring. The monitoring design described in this chapter, however, is intended to be used with a sample size sufficient to detect a 20-percent change in relative abundance over a 5-year monitoring period. If a 20-percent decline were observed within a bioregion, this percentage would represent a trigger point for assessing whether an immediate change in land management within that bioregion was warranted. Given the mobility of goshawks and the wide range of forest types they use, it is difficult, if not impossible, to define discrete breeding populations. The USDA Forest Service has chosen to monitor goshawks within fairly large geographic areas that are referred to here as bioregions. Generally speaking, a bioregion is a large spatial extent defined by coarse scale similarity in ecological conditions. Descriptions of bioregions and rationale for boundaries are described under section 2.2.2 of Planning and Design. The indicator used to determine the frequency of occurrence of goshawks is P, the proportion of primary sampling units (PSUs) (Levy and Lemeshow 1999) with goshawk presence, or in other words, the frequency of presence. A PSU is a square sampling unit of 600 ha. The sampling frame for each bioregion consists of a grid of PSUs laid over all potential goshawk nesting and forested foraging habitat, both on USDA Forest Service lands and on lands of all collaborators in the bioregion. 1.7 Change Management This technical guide is considered a draft until the bioregional monitoring design has been implemented for at least 1 year in at least one bioregion. After the first year, the design team anticipates several changes in the technical guide. The description of creating a sampling frame for bioregional monitoring is currently sketchy, and more details will be added based on the first bioregion’s experience. The Data Storage section will be expanded to describe in detail the structure of the bioregional database and the data fields that will be routinely migrated to NRIS Fauna. Guidelines for constructing a field data entry form might be revised for better efficiency and/or clarity. The Data Analysis section will be augmented with analytical tools available either on a CD or a Web site. This technical guide will be reviewed 5 years after the first year’s revision to determine if additional changes are warranted. Population monitoring at the bioregional scale will likely remain unchanged, but more details on FIA data and landscape habitat variables might be added. An additional chapter on nesting- effort monitoring might also be added to provide a method for national forests to quantitatively evaluate changes in goshawk breeding efforts over time. 1-7 1-7 Northern Goshawk Inventory and Monitoring Technical Guide 1-8 Northern Goshawk Inventory and Monitoring Technical Guide 2.1 Objective Each bioregion will estimate P from a stratified random sample of PSUs, using a sample 2-1 2-1 Northern Goshawk Inventory and Monitoring Technical Guide size that is sufficient for attaining an estimate that is within 10 percent of the actual frequency 90 percent of the time. The ability to detect changes in frequency of presence is currently unknown, be- cause it will depend on the persistence of goshawks from one year to the next in each individual PSU that is sampled. An examination of the data after 2 years will allow for an estimation of the amount of change that can be detected with specified power. To look for possible correlations between changes in population and habitat, two types of habitat data will be used: (1) Forest Inventory and Analysis (FIA) data summarized for all FIA points in the sampling frame, and (2) landscape pattern data for all PSUs, obtained from Geographic Information System (GIS) analysis. Selected habitat variables from both sources will be used as covariates in a logistic model to evaluate relationships between goshawk presence and habitat. These habitat variables also will be included in models to evaluate change in P between 2 or more years. Habitat variables will likely differ between bioregions, reflecting geographic differences in goshawk habitat relations. Each bioregion will identify a bioregional coordinator to oversee the goshawk monitoring program. The coordinator can be affiliated with any agency, research facility, or university, either under salary or under a contract. The bioregional coor- dinator will work with biologists and biometricians to establish the sampling frame, determine sampling intensity, select relevant habitat variables, provide training for field personnel, oversee data collection, analyze the data, and prepare annual reports. This monitoring design was created for the USDA Forest Service, but collaboration with other agencies and land owners is strongly encouraged, because the larger sample size attained through collaboration will yield better estimates of status and change over time. Once a monitoring program is in place, however, adding PSUs is not recommended, due to the difficulty in evaluating year-to-year differences when the sampling frame has changed. Later collaboration is possible, but the added PSUs would need to be evaluated separately. The following paragraphs describe recognized limitations of the bioregional monitoring program. First, although the boundaries of each bioregion include all land ownerships, the sampling frame is composed of only national forest lands and the lands of any monitoring collaborators. Northern Goshawk Inventory and Monitoring Technical Guide 2.1 Objective Therefore, inferences from goshawk population trends are applicable only to the lands within the sampling frame and not to the entire bioregion. Second, this monitoring design does not provide a means of estimating total population size in a bioregion. A goshawk detection may or may not represent the presence of a breeding pair, and further efforts beyond this sampling design would be needed to establish the location of active nests. Furthermore, this monitoring program is not designed to provide information on nesting efforts or reproductive success. 2-2 2-2 Northern Goshawk Inventory and Monitoring Technical Guide Finally, this design could be limited in the ability to detect population trends if either the precision of each annual estimate is low or if the specific PSUs with goshawk presence change every year. In either case, it might be difficult to detect small but potentially meaningful trends in P. The power to detect change will not be known until 2 or 3 years of data are available. Northern Goshawk Inventory and Monitoring Technical Guide 2.2 Planning and Design 2.2.1 Goshawk Natural History Relevant to the Bioregional Sampling Design The northern goshawk is a wide-ranging forest raptor found in boreal and temperate forests of the Holarctic zone. In North America, two subspecies are recognized by the American Ornithologists’ Union (1957): Accipiter gentilis laingi, which occurs along the insular coast from Vancouver Island north to Icy Strait and Lynn Canal in Alaska, and A. g. atricapillus, which occurs throughout the rest of the species range. Goshawks in southern Arizona and the mountains of central Mexico have been proposed as a third subspecies, but this proposal is currently under debate (Whaley and White 1994). Differences among the subspecies represent subtle breaks in clinal variation (Squires and Reynolds 1997). Goshawks use a variety of forest types for nesting and foraging. Across the entire breeding range, goshawks nest in a broad range of vegetative communities, from extensive mature coniferous forest in coastal regions to small patches of aspen and pine in Great Basin shrubsteppe communities (Squires and Reynolds 1997). Within their home ranges, goshawks use a diverse array of habitats for foraging, both in terms of vegetation type and the degree of openness (Squires and Reynolds 1997). At the scale of nest-site selection, goshawks nest in the densest stands available, given the capability of the forest type; high canopy closure also appears to be an important habitat characteristic for the species (Hayward and Escano 1989). The size of forest patches used for nest areas appears to be highly variable across the species’ range. Goshawk habitat selection theoretically follows a modified model of ideal free distribution that is limited by territorial behavior (Fretwell 1972). Under the ideal free distribution model, individuals choose to occupy the best habitats first and will settle into secondary habitat only when competition for resources in primary habitat outweighs the lesser availability of resources in secondary habitat. When a species is territorial, the presence of dominant individuals forces greater use of secondary habitats even before resources become limiting. It appears that goshawks follow this model because high-quality habitats contain a fairly fixed number of territories (Reynolds and Joy 1998), and no evidence supports the idea that increases in prey result in increased density of breeding pairs in these habitats. 2-3 2-3 Where forest habitats are continuous, the spacing between the nests of breeding pairs is fairly regular. 2.2.2 Description and Rationale for Monitoring Design This section describes the bioregions’ boundaries and provides guidance for establishing the sampling frame within a bioregion. Each subsection consists of the Procedure, which is the protocol for carrying out this bioregional monitoring design, and the Rationale, which describes the scientific basis for the protocol. 2.2 Planning and Design On the Kaibab Plateau of Arizona, mean nearest-neighbor distance for 103 nesting pairs was 3.9 km (SD = 0.32) (Reynolds and Joy 2006). On the Klamath National Forest, the distance was 3.3 km ± 0.3 SE for 59 nesting pairs (Woodbridge and Detrich 1994), and similar spacing was observed in northeastern California on the Modoc National Forest (Woodbridge 1998). Within territories, goshawks typically shift their breeding sites among several alternate nests up to 1.8 km apart (Squires and Reynolds 1997, Woodbridge and Det- rich 1994). Although most alternate nests are grouped within a forest stand or cluster of adjacent forest stands, a search radius of 1 km is required to locate 95 percent of alternate nests used over a period of several years (Reynolds et al. 2005). It is important to understand how territoriality and habitat quality can influence the ability to detect changes in goshawk abundance over time. During a population increase, goshawk density in high-quality habitats would remain fairly constant due to territorial spacing. More goshawks might be detected in these habitats, but this increase would be due to the presence of “floaters” rather than to an increased density of territories. In contrast, we predict that goshawk numbers would increase in habitats of secondary or marginal quality as surplus individuals who are unable to find vacant territories in high-quality habitats establish new territories. Nevertheless, overall density might be lower than that of high-quality habitats due to limitations in the availability of nesting stand structure or to prey resources. During periods of population declines, it is likely that marginal habitats would be the first to show a drop in numbers, with prime territories remaining fairly constant. A decline in goshawk abundance in high-quality habitats is likely to represent either a dramatic overall population decline or a decline in the quality of the primary habitat itself, either through changes in nesting site availability or food resources. Nesting site availability could decline as a result of succession, climate, or management actions. Food resources could decline from a combination of changes in habitat, food, predators, competitors, disease, or weather. Because of the different population responses that are expected in habitats of different quality, it is important that all potential habitats are included in a monitoring design, not simply the high-quality habitat. 2-4 2-4 Northern Goshawk Inventory and Monitoring Technical Guide Procedure The Toiyabe and Inyo National Forests both are split between two bioregions. Figure 2.3. The Toiyabe and Inyo National Forests both are split between two bioregions. g y y p Procedure The ecological basis for the bioregions is the Forest Service National Hierarchical Framework of Ecological Units (Bailey 1980, McNab and Avers 1994), overlaid with the geographic range of the northern goshawk (Squires and Reynolds 1997). By aggregating neighboring polygons of similar adjacent ecological provinces, the boundaries of 10 goshawk bioregions were delineated: 8 in the coterminous United States and 2 in Alaska (table 2.1, figure 2.1). If a relatively small polygon of one ecological province was enclosed within a larger polygon of a different ecological province, it was included in the bioregion of the larger province (figure 2.2). Boundaries were also influenced by the configuration of national forests, so that no national forest would be split between two bioregions. Exceptions to this rule occurred with the Toiyabe and Inyo National Forests, both of which occur in the Cascade-Sierra and Intermountain Great Basin bioregions (figure 2.3). These national forests will have separate data from each of the two bioregions. Table 2.1. Goshawk bioregions. Goshawk bioregion Area (km2) Pacific 121,590 Cascade Sierra 1,181,072 Intermountain Great Basin 620,861 Northern Rocky Mountains/Blue Mountains 480,028 Central Rocky Mountains 317,891 Colorado Plateau and Southwestern Mountains 514,700 Great Lakes 490,500 Northeast and Central Appalachian Mountains 517,225 Coastal Alaskan Forests 173,700 Interior Alaskan Forests 697,545 2-5 Northern Goshawk Inventory and Monitoring Technical Guide 2-5 Figure 2.1. Goshawk bioregions. Figure 2.1. Goshawk bioregions. Figure 2.2. A polygon of an ecological province (342) that is embedded in the Northern Rockies bioregion is included in that bioregion to smooth bioregional boundaries. Figure 2.1. Goshawk bioregions. Northern Goshawk Inventory and Monitoring Technical Guide Figure 2.2. A polygon of an ecological province (342) that is embedded in the Northern Rockies bioregion is included in that bioregion to smooth bioregional boundaries. Northern Goshawk Inventory and Monitoring Technical Guide Figure 2.2. A polygon of an ecological province (342) that is embedded in the Northern Rockies bioregion is included in that bioregion to smooth bioregional boundaries. Figure 2.2. A polygon of an ecological province (342) that is embedded in the Northern Rockies bioregion is included in that bioregion to smooth bioregional boundaries. Figure 2.2. A polygon of an ecological province (342) that is embedded in the Northern Rockies bioregion is included in that bioregion to smooth bioregional boundaries. Northern Goshawk Inventory and Monitoring Technical Guide 2-6 Figure 2.3. The Toiyabe and Inyo National Forests both are split between two bioregions gure 2.3. Northern Goshawk Inventory and Monitoring Technical Guide Rationale The bioregional scale was selected for monitoring northern goshawk populations and habitats after considering two other possible scales: each individual national forest and the entire range of the northern goshawk. The national forest scale was considered too small for both ecological and sampling reasons. Goshawks using a specific national forest are not isolated from goshawks on adjacent forests and other neighboring lands, so “population” trends for a given forest might not be meaningful. Also, because of the inherent variability in population estimates, the sample size required to detect a significant change in abundance at the national forest scale would be unaffordable for most national forests. The entire range of the goshawk was considered too large for aggregating and interpreting population and habitat data due to potentially wide variation in goshawk habitat relations across the species’ range. Climatic, physiographic, and ecological factors influencing goshawk populations differ among bioregions, potentially resulting in dissimilar population abundance and trends. Bioregions represent the largest scale at which data should be aggregated, analyzed, and summarized. Range- wide trends will be estimated through a composite analysis of the bioregional trends. 2-7 2-7 The 10 bioregions delineated for the purpose of broad-scale population monitoring are arbitrary, with movements between bioregions likely and, in some cases, documented. For example, goshawks from the Kaibab Plateau in the Colorado Plateau bioregion have been recaptured on the Dixie National Forest, in the Intermountain Great Basin bioregion (Reynolds 2002). The delineation of bioregional boundaries, however, is primarily based on differences in ecological conditions that could affect goshawk status and trend. The bioregions are truncated at the Canadian border (with the possible exception of binational collaboration in the Great Lakes bioregion), and the artificial nature of these boundaries is acknowledged. Transnational movement of goshawks will be considered when population trends are reported for the four bioregions that border Canada. Procedure The PSUs are a grid of squares, each approximately 600 ha, and are spatially oriented to nest within the grid framework used by the FIA program. The FIA grid is a coast-to-coast coverage of 2,402.7 ha hexagons that was established to conduct forest inventories on Federal and private lands. Ideally, the grid of PSUs is created by starting with the FIA grid and nesting the goshawk grid within it. If the bioregional coordinator cannot obtain access to the FIA grid, the PSU grid can be established from a randomly selected x, y coordinate within the bioregion. Although the orientation of the FIA grid in relation to the PSU coverage will not be known, the relationship will be roughly four PSUs for each FIA hexagon. Northern Goshawk Inventory and Monitoring Technical Guide Rationale The size and shape of the PSU reflect ecological factors and sampling considerations. Although each PSU is not intended to represent a goshawk territory, the size is approximately the same as a territory so that a detection in a PSU will roughly correspond to one breeding pair. If the PSU is too small, several adjacent PSUs could constitute one territory, and sampling in each would not be independent. If the PSU is too large, more than one nesting pair could be present, yielding an underestimation of goshawk occurrence. The PSU size will— • Maximize the probability of a PSU containing one territory. • Reduce the probability of a PSU containing more than one territory. • Be logistically feasible and cost-effective to survey. To determine optimal size, we compared the spacing of goshawk territories in three geographical areas. Mean nearest-neighbor distances among goshawk territories To determine optimal size, we compared the spacing of goshawk territories in three geographical areas. Mean nearest-neighbor distances among goshawk territories 2-8 on the Kaibab Plateau (AZ), Southern Cascades Mountains (CA), and Modoc Plateau (CA) are remarkably similar, ranging from 3 to 4 km. One-half of this distance, a radius of 1.5 to 2 km, yields an area of 761 to 1,017 ha. Using this information, we created a range of potential PSU sizes from 405 to 1,214 ha, at 202.3 ha increments, and overlaid them in a GIS with several maps of goshawk territories at known density and spacing. The results indicated that, while the proportion of PSUs with goshawk territories increased with increasing plot size, PSUs with multiple territories began to appear when PSU size was at 607 ha (table 2.2). Thus, PSU sizes above 607 ha might underestimate goshawk relative abundance, because two territories rather than just one could be present in a PSU. Another consideration in PSU size was the desire to make the sampling design compatible with the framework developed by the FIA program. FIA grid cells are too large for adequate goshawk sampling, but a “densified” grid, in which the number of grid points is doubled, falls within the range of goshawk PSU sizes that was determined through interterritory distance. A densified grid is already used by the FIA program in the States within the Great Lakes goshawk bioregion and is also used by USDA Forest Service Region 1, which includes part of the Northern Rockies goshawk bioregion. Northern Goshawk Inventory and Monitoring Technical Guide Rationale The Multiple Species Inventory and Monitoring Protocol is also designed around the FIA grid and was tested in California on a densified grid. This protocol uses several detection methods to survey for a variety of terrestrial species, many of which are prey of goshawks. There are benefits in designing the goshawk sampling frame to be compatible with that used for potential prey. Plot shape may influence survey results through edge effects. Compared with linear or rectangular plots, circular or square PSUs provide the lowest perimeter to area ratio, thereby decreasing the potential for miscounting individuals occurring near the boundary of a PSU (Krebs 1989). A square plot also facilitates the use of line transects for individual call points. Table 2.2. PSU size in relation to the number of goshawk territory core areas (cores) within it. PSU size Number of Percentage of PSUs (ha) PSUs 0 cores 1 core 2 cores 405 429 85.3 14.7 0.0 607 292 78.8 20.9 0.3 809 229 73.4 25.8 0.9 1,011 182 67.6 30.2 2.2 1,214 158 64.6 31.6 3.2 PSU = primary sampling unit. Table 2.2. PSU size in relation to the number of goshawk territory core areas (cores) within it. Northern Goshawk Inventory and Monitoring Technical Guide 2-9 2-9 Procedure In order for a grid cell to become a PSU in the bioregional sampling frame, it must meet two criteria: (1) some portion of the grid cell must contain potential goshawk breeding habitat (for nest sites or forested foraging), and (2) most of the grid cell must consist of USDA Forest Service lands or lands of monitoring cooperators. Each grid cell receives a numeric address and is classified as goshawk habitat or nonhabitat, based on a GIS classification from remotely sensed data. The rule set used to classify goshawk habitat versus nonhabitat will be developed separately by each bioregion. The broadest classification would simply be forested versus nonforested, but a bioregion could use elevation, cover type classifications, or other criteria to eliminate certain forested lands with no potential for goshawk use during the breeding season. Procedure All PSUs in the bioregional sampling frame are classified into two strata based on habitats (primary and marginal) and two additional strata based on survey costs (high and low). In general, the primary habitat category should be similar to habitats that are currently used by most territorial goshawks in the bioregion. Classification can be accomplished by characterizing the PSUs that currently contain known goshawk territories and using these characteristics to identify all other PSUs with these same characteristics. Marginal habitat is any potential habitat that does not meet the characterization of primary habitat. During the test of the bioregional design on the San Juan and Rio Grande National Forests, primary habitat was identified as follows (Joy et al. 2003). A GIS layer of all nests known to be used within the past 10 years was constructed for each national forest separately. The GIS analyst then centered a 688 ha square on each nest site and ex- tracted a number of habitat attributes associated with this square. (At that time, PSU size was set at 688 ha rather than 600 ha.) Some of the key habitat attributes were the proportion of the square occupied by different vegetation cover types, average basal area and average canopy cover of all stands in the square, percentage of shrub cover, horizontal diversity, elevation, and slope. The GIS analyst then randomly selected a number of 688 ha squares on each forest, commensurate with the number of nest site squares for that forest, and extracted the same habitat attributes. Using separate stepwise logistic regressions for each national forest, the analyst determined which habitat attributes distinguished the nest site squares from the randomly selected squares. The attributes were slightly different for each national forest, primarily because of difference in aspen use between the two national forests. The GIS analyst then applied the specific attributes of nest site squares on a national forest to all PSUs on that national forest and assigned PSUs to the primary habitat category if they fell within cutoff values for all the key attributes identified. Cost categories were not used during the testing phase of the bioregional design, but they will be defined by bioregional coordinators based on road access and travel distance. Rationale The target population is territorial goshawks on lands administered by the USDA Forest Service and cooperating landowners within each bioregion. Therefore, the sampling frame for goshawk monitoring is not the entire grid described above, but only the portions of the grid that meet the specified criteria. The two criteria for including a grid cell in the sampling frame are worded differently in terms of the amount of area needed to meet the criteria. For the first criteria, the portion of the grid cell that contains potential goshawk breeding habitat can be quite low and still be included because goshawks are known to use small patches of habitat in otherwise unsuitable habitat, such as small aspen (Populus tremuloides) stands surrounded by montane shrublands and patches of late seral forest in burned or harvested areas (Squires and Reynolds 1997). The bioregional estimate of goshawk frequency of occurrence could be calculated too low if PSUs with small patches of habitat were not included. Due to bioregional differences, the protocol does not contain a specific threshold for the amount of habitat needed in a PSU in order to be included. The bioregional coordinators are encouraged, however, to set a very low threshold based on local landscape pattern. On the other hand, it is extremely important to eliminate from the sampling frame any grid cells that cannot be adequately surveyed due to land ownership and access issues, as addressed in the second criteria. Once again, the protocol does not contain a specific threshold, but in this case it is best to err toward requiring that most of the grid cell be accessible in order to include it. Whereas the first criteria eliminates unsuitable habitat from the survey, the second criteria could inadvertently eliminate large blocks of suitable habitat where goshawk might be present but cannot be detected due to accessibility. Including such PSUs could result in a low estimate 2-10 Northern Goshawk Inventory and Monitoring Technical Guide of goshawk frequency of occurrence simply because PSUs with potential habitat were only partly surveyed. Ideally, all of each PSU must be accessible in order in include it, but bioregions with checkerboard patterns of land ownership might need to establish a lower threshold in order to obtain the desired sample size of PSUs. Northern Goshawk Inventory and Monitoring Technical Guide Procedure The high-cost category would include PSUs that fall in wilderness and unroaded areas and in roaded PSUs that are three or more hours’ drive from expected starting points (district offices and field stations). 2-11 After the PSUs are assigned to the habitat and cost categories, they are placed into one of the following four strata: • Stratum 1. Primary habitat, low survey costs. • Stratum 2. Primary habitat, high survey costs. • Stratum 3. Marginal habitat, low survey costs. • Stratum 4. Marginal habitat, high survey costs. Rationale The purpose of stratification is to increase the precision of the estimate of P, given a fixed budget for monitoring. If sampling were based on the proportional representation of primary and marginal habitats, a random sample might overemphasize marginal habitat and contribute little to an understanding of goshawk trends over time. Also, a random sample could result in a substantial proportion of PSUs with difficult access, raising the costs or lowering the sample size of the monitoring effort. With stratifica- tion based on habitat and costs, all potential habitats are sampled, but more emphasis is placed on habitats with higher probability of goshawk presence and with lower survey costs. Currently, most goshawk survey work is associated with proposed projects, and biologists tend to survey those habitats within project areas that have the highest probability of goshawk presence, based on current knowledge. Additional surveys tend to occur in roaded areas in the absence of any sampling design and, as such, are classic examples of convenience sampling. The stratification described above ensures that unroaded areas and marginal habitats are specifically included in the total sample. Even if the distinction between primary and marginal habitats is poorly understood, stratification ensures that the monitoring program includes more than just primary habitats and that surveys are performed in the context of a sampling design. As mentioned above, stratification is preferred over a simple random sample because of the potential for marginal habitats to be unoccupied. If monitoring resources were unlimited, the vast extent of marginal habitats could be tackled by funding an expansive monitoring program. Funding limitations and the need to be strategic in the use of limited funds, however, require that efforts in potentially unproductive habitats be limited. Finally, it must be understood that the delineation of primary and marginal habitats for monitoring purposes should absolutely not be used for forest planning and management decisions. The purpose of stratification is to provide better efficiency in goshawk surveys, but the results of the surveys could greatly change our understanding of habitats used by goshawks. Certain habitats that are initially classified as marginal will gain importance if surveys yield detections in these habitats. Rationale The sample size of surveyed PSUs will vary by bioregion, depending on the representation of total PSUs in each of the four strata, the average cost of surveying a PSU in each stratum, and the probability of goshawk presence in each stratum. An accurate assessment of the sample sizes required to estimate a change from one year to the next, or for estimating a trend over several years, with a desired and stated precision requires knowing the persistence of presence and absence at PSUs. Those characteristics cannot be estimated until at least 2 years of data are collected. The sample size for estimating change over time, however, will be larger than the sample size needed for a single year estimate of P, so multiyear needs must be kept in mind when running the interactive spreadsheet. Rationale 2-12 Northern Goshawk Inventory and Monitoring Technical Guide To maintain consistency in the monitoring program, a habitat that is initially classified as marginal will remain in that category even if goshawks are found to be present, but the habitat will be correctly shown as occupied in any post-monitoring reports, reflecting new knowledge gained from the monitoring effort. It is the outcome of the monitoring effort, rather than the pre-monitoring stratification maps, that should be used for planning and management. Procedure Appendix B displays an interactive spreadsheet (available on the CD on the back cover) to calculate the sample size needed to estimate P and to allocate the sample among strata. Pilot data specific to the bioregion are needed to provide an estimate of cost and the probability of goshawk presence. Northern Goshawk Inventory and Monitoring Technical Guide Multiyear Design This monitoring plan employs a 100 percent annual remeasurement design wherein a fixed number of sites are repeatedly sampled each year, with every PSU sampled each year. This design was determined to be preferable to designs incorporating an- nual sample selection (augmented serially alternating panel: Urquhart and Kincaid 1999) because of sample size and logistical considerations. Variance is lower in 100 percent annual remeasurement designs, requiring lower sample sizes to attain similar precision in estimates of P. From a logistical perspective, 100 percent annual remea- surement allows for increased efficiency as sampled PSUs and best access routes become more familiar over a period of years. Under annual random selection, each year provides new logistical challenges as new PSUs are initiated into the sample. Annual Design Each bioregion will obtain information on the presence of goshawks using two visits per sampled PSU, with each visit occurring during a specific stage in the breeding season. Visit 1 will be conducted during the nestling stage (generally late May through late June or early July), and visit 2 will be conducted during the fledgling stage (late June through mid-August). Depending on spring snow depth, it may not be possible to initiate surveys until June in some PSUs; survey schedules need to be flexible to accommodate this variability. Surveys may be conducted from dawn to dusk; it is anticipated that 1 to 7 days will be required to survey one PSU. If a detection is not made during the first visit, then a second visit is required. If a detection is made during the first visit, however, a second visit is required for a 2-13 Northern Goshawk Inventory and Monitoring Technical Guide randomly selected subsample of PSUs in order to derive detection rates used for es- timating P, as described in section 2.5.1. In other words, it is important to know what proportion of PSUs with detections in visit 1 did not yield detections in visit 2. This subsample should consist of at least 30 PSUs to provide reasonable confidence in the detection rates that are calculated. Within this subsample, each PSU in which an ac- tive nest was discovered during the first visit will automatically be given a detection history of “11”, because the nest will either still be active or will show signs of recent activity during the second visit, and the outcome will always be a detection (see sec- tion 2.3.1). The bioregional coordinator should not purposefully select all PSUs with active nests as part of the subsample for the second visit, however, because doing so would result in an inflated estimate of the detection rate. If funding is adequate, the bioregional coordinator can choose to conduct a second visit at all PSUs except those with active nests rather than select a random subsample. Procedure PSUs will be sampled using broadcast calls of northern goshawks, following established standardized protocols based on Kennedy and Stahlecker (1993), USDA Forest Service (2000), and Joy et al. (1994). Specifics regarding the Broadcast Acoustical Survey design are found in chapter 3. Although the Broadcast Acoustical Survey is the selected method for PSU sampling, other methods such as Dawn Acoustical Surveys or Stand Searches (chapter 3) may be used before the first official 2-14 Northern Goshawk Inventory and Monitoring Technical Guide visit to identify those portions of the PSU in which goshawk detections are most likely. Any goshawk detections resulting from such presampling efforts will not be counted as part of the bioregional sampling effort but will simply be used to increase survey efficiency within the PSU. In other words, if a goshawk is detected before the first official visit but is not detected during the official bioregional monitoring effort, the survey outcome for that PSU is no detection. The sampling grid in each PSU comprises 120 call stations located on 10 transects that are 250 m (meters) apart, with 12 call stations per transect. Call stations along each transect are 200 m apart, and adjacent transect stations are offset 100 m to maximize coverage. PSU size and call station spacing are not perfectly matched, resulting in slightly uneven spacing of call stations relative to all four PSU boundaries (appendix C). The objective is to provide complete survey coverage of the PSU so that all suitable goshawk habitats are within auditory detection distance (roughly 150 m) of a call point. Transect lines and call points are permanently marked and locations recorded with a GPS. The procedure is to survey all potential goshawk habitats in the PSU until a detection is made or until all potentially suitable habitat within the PSU is completely surveyed. For efficiency, surveyors start in areas of the PSU with the highest likelihood of goshawk presence. Areas of unsuitable habitat (talus slopes, shrubland, lakes) are excluded from survey. Call points are not surveyed if more than 50 percent of the coverage area around the point is unsuitable habitat or is on slopes greater than 60 percent. The actual number of call points within a PSU will therefore vary based on the extent of suitable habitat. Northern Goshawk Inventory and Monitoring Technical Guide Rationale The Broadcast Acoustical Survey was selected for bioregional monitoring based on detection rate, logistical feasibility, and applicability under a wide range of conditions. Although numerous methods have been devised to obtain detections of nesting goshawks, only three are supported by rigorous field testing and statistical assessment of detection rates. The primary methods available for bioregional monitoring are Broadcast Acoustical Survey, Dawn Acoustical Survey, and Intensive Search Survey (chapter 3). Detection rates of all three methods are high (0.89 to 1.00 for the two-visit protocol); however, the costs in terms of effort per detection vary significantly. Dawn Acoustical and Intensive Search Survey methods are most applicable to focused surveys of habitat patches, whereas the Broadcast Acoustical Survey is most suitable for systematic surveys of large areas. See chapter 3 for detailed descriptions and a comparison of these methods. This protocol is based on two visits to account for imperfect detectability and enable estimation of detection rates (the proportion of times that a goshawk is detected when it is present). Two visits, however, will also increase the probability of making a detection, especially in occupied, nonbreeding territories, including territories where breeding was initiated but failed. Field tests indicate that one visit will yield detections in approximately 64 percent of these territories, whereas the detection rate for two visits is 87 percent (Keane and Woodbridge 2002). When goshawks are actively breeding, there is less difference in the detection rate, with 90 percent for one visit and 94 percent for two visits (Keane and Woodbridge 2002). (See table 3.2 in chapter 3.) Procedure Transect lines and call points are established with GIS before field work begins, and surveyors can use GPS units to obtain the most efficient and economical survey coverage rather than systematically walking transect lines. Surveyors should avoid using roads to walk or drive between call points, however, because part of the survey method involves looking and listening for goshawk or any goshawk signs, such as nests, plucking posts, molted feathers, and whitewash, between call points. Active nests and freshly molted feathers found during one of the two official visits are counted as detections, but an unused nest is not a detection. If a detection occurs, the PSU is recorded as having goshawk presence and the survey is ended. If a detection does not occur, the surveyors continue to survey at call points with increasingly less likelihood of goshawk presence. A freshly molted goshawk feather is considered a detection, but surveyors are encouraged to continue to survey the PSU with broadcast calls because of the additional information associated with an aural response or visual detection. For bioregional monitoring, data collected during surveys at each PSU will consist solely of detection/no detection of goshawks. If national forests wish to locate 2-15 the nest for management purposes, detections can be used to inform an Intensive Search Survey after the PSU has been surveyed. Habitat Data Bioregional coordinators will acquire two sets of habitat data: (1) FIA data for the entire bioregion, and (2) landscape pattern data for all PSUs that are surveyed. FIA data are collected by trained crews supervised by the FIA program, using field protocols that are not described here. The bioregional coordinator acquires data from all FIA plots within the bioregional sampling frame by making a request through the appropriate FIA regional office, which is associated with the USDA Forest Service Research and Development branch. (See http://fia.fs.fed.us.) The bioregional coordinator can request FIA personnel to provide summary information on stand structural variables that characterize overall habitat condition (e.g., basal area, stand density, dbhq). These data are available after each period of FIA data collection 2-16 Northern Goshawk Inventory and Monitoring Technical Guide (usually annually). The coordinator uses the summary information to assess changes in habitat condition over time and to look for possible correlations between changes in the bioregional estimate of goshawk occurrence and changes in habitat. Landscape pattern data are collected in all PSUs that are surveyed in order to compare landscape pattern with and without goshawk detections. These data are obtained through remote sensing and GIS, under the bioregional coordinator’s leadership. Landscape variables are derived from the best available vegetation and road coverages with pixel resolution between 20 to 30 m (i.e., from Landsat 5 or 7). These variables are (1) number of vegetation patches; (2) number of vegetation cover types; (3) size of largest vegetation patch (including area of the patch extending beyond the circle or PSU boundary); (4) percentage of PSU in primary, marginal, and unsuitable habitat, as defined by the initial PSU stratification procedure; (5) estimated proportion of the PSU that has been thinned or burned under prescription in the past 20 years; (6) estimated proportion of the PSU that has been harvested in the past 20 years (commercial thinning, overstory removal or clearcut); and (7) straight-line distances from the PSU center to the nearest permanent water (including springs), road (regardless of use status), trail, and meadow edge. Other Environmental and Management Factors Bioregional coordinators should investigate other environmental and management factors that could influence goshawk abundance, such as snow pack, spring precipitation, spring temperatures, prey abundance, overall road density, recreational areas (e.g., skis areas, campgrounds), and other managed areas (e.g., mining, utility corridors). Many forms of climatic and weather data are available and could prove useful in goshawk trend analyses. It would be challenging to obtain prey data for an entire bioregion, but to the extent that prey abundance is affected by weather, the weather data might be a useful surrogate. In some areas, cone crop data is available and could serve as a correlate for squirrel populations (Keane 1999). The areal extent of disease and insect infestations, obtained from the Forest Health program, might also lead to productive analyses. Northern Goshawk Inventory and Monitoring Technical Guide Method Validation The Broadcast Acoustical Survey technique was field validated using known nest sites and survey crews that were unfamiliar with nest locations (USDA Forest Service 2000). With a two-visit protocol, crews detected 94 percent of occupied, breeding territories and 87 percent of occupied, nonbreeding territories. (See table 3.1 in chapter 3.) 2-17 The bioregional monitoring design was field tested in 2003 on the San Juan and Rio Grande National Forests in southern Colorado. Of the 20 PSUs that were sampled, 18 were sampled twice, using two field crews. Eight of the PSUs were known to contain territories prior to the field test. The sampling resulted in two detections and the discovery of 2 additional territories and 12 additional inactive nests (Ferland et al. 2006). This test was conducted during a year of low breeding activity. The methodology was judged to be practical and efficient, and no modifications to the sampling design or data collection techniques were proposed. National Level Standardized training materials have been developed and are available on the CD located on the back cover of this technical guide. Training materials include identification of vocalizations of goshawks and species with similar vocalizations, identification of goshawks and other forest raptors, and identification of molted feathers of forest raptors. Chapter 3 provides detailed descriptions of survey protocol implementation. Bioregional Level A bioregional coordinator with at least 2 years of similar supervisory experience will be responsible for survey implementation, training, and performance evaluation. If survey work is accomplished under contract, the bioregional coordinator will be responsible for contract inspection and monitoring of data quality. Annual field crews will consist of two-person teams. Each crew should have at least one member who has field experience with goshawks and knowledge of goshawk vocalizations, sign, and behavior and who can serve to train inexperienced partners. The bioregional coordinator will conduct a 1-week training session each spring to standardize understanding of survey protocols, goshawk identification and vocalizations, and data recording procedures. Training sessions should be conducted in association with goshawk study sites where nesting goshawks may be observed by trainees. At the completion of each PSU survey visit, data entry forms and maps will be assembled and reviewed for inconsistencies or incomplete data by the survey crew leader. Following this review, the survey outcome data will be entered into National Resource Information System (NRIS) Fauna and transmitted to the bioregional coordinator. The bioregional coordinator shall be responsible for reviewing and compiling data and for arranging for statistical analyses. 2-18 Northern Goshawk Inventory and Monitoring Technical Guide Northern Goshawk Inventory and Monitoring Technical Guide Critical Areas of Standardization Success of the bioregional monitoring design largely depends on obtaining high-quality data, so most aspects of data collection are considered critical for standardization. Broadcasting equipment must meet the criteria stated in chapter 3. Field personnel must be alert and vigilant, not only at the call points, but when walking between call points. Weather conditions must be favorable (no rain and no wind stronger than 15 mph) for a survey to be valid. Surveyors must not use vehicles to travel between call points, because the time spent walking between call points is part of the survey. Dawn Acoustical Surveys can be used to acquire information on territory status before bioregional monitoring commences, but results from these surveys are not included with the bioregional results. The bioregional monitoring design must adhere to a two-visit Broadcast Acoustical Survey protocol in order to achieve consistent results among all sampled PSUs. The overall design is also critical: PSU size, as well as distances between transects and call points, should not be altered. 2.3.3 Data Entry Forms A standardized field data collection form (appendix D) will be created by each bioregional coordinator and used to record data during surveys. At each call point, the time, call point number, and goshawk detection codes will be entered, providing a detailed narrative of the survey visit progress. Station numbers on the data entry form will be referenced on an attached PSU map. When all call points in a PSU are finished, the results for each of the two visits in the PSU will be entered or uploaded into the PSU relational database (described in an appendix of future updates of this technical guide). Data input fields include PSU ID number, visit date, observer names, weather conditions, visit start time, and visit end time. At each numbered call station, start time and detection code will be recorded. For each PSU, a survey map will be created and maintained in a GIS. Using the most recent digital orthophotoquad as a base layer, the survey map should clearly display PSU boundaries, transect routes, and numbered call points. A printed copy of this map (scale = 1:15000: 8.5x11” sheet) will accompany the field data collection form during each visit. Use of this standardized map will facilitate orientation of surveyors within the PSU, and the recording of detection locations. 2-19 Northern Goshawk Inventory and Monitoring Technical Guide Northern Goshawk Inventory and Monitoring Technical Guide 2.3.4 Survey Logistics Before the monitoring program begins, the bioregional coordinator will develop an annual plan of operation that will address, at a minimum, the following logistical considerations for administering and conducting surveys: • Facility and equipment needs—acquisition and maintenance of CD players and amplifiers, batteries, compasses, maps, and other field equipment. • Transportation and access management—acquisition of vehicles, management of fueling and mechanical maintenance; arrangements for specialized licenses or authorization for use of all terrain vehicles; arrangements for spring clearing of road obstructions or chainsaw safety training for survey crews. • Safety plan and equipment—development of a job hazard analysis for all aspects of surveys and review for needed revisions annually; acquisition of first-aid kits and training for survey crews. • Radio communications—radio frequencies, procedures for contacting the dispatch center, radio communications procedures. • Flagging and marking schemes—scheme for identifying transects and call stations; coordination with other resource units to avoid overlapping marking. • Permits and handling procedures—according to State and Federal guidelines under the Institutional Animal Care and Use Committee, the use of broadcast surveys does not require permitting. • Agreements and memorandums of understanding (MOUs)—access agreements (if needed) with adjacent landowners; MOU with cooperating agencies and landowners. • Contract administration (if work is done under contract)—frequency and mode of contact with contractor, inspection schedule, delivery schedule, and payment schedule. Job hazard analyses should address risks associated with driving, off-trail hiking, high decibel amplifiers, illegal drug activities on public lands, and any local hazards. Regarding high decibel amplifiers, the bioregional coordinator should ensure that broadcast acoustical equipment does not exceed the Occupational Safety and Health Standards, 29 CFR 1910.95 (U.S. Department of Labor, Occupational Safety and Health Administration 1974). Equipment can be tested prior to the field season with a dosimeter attached to the lapel of someone holding the equipment. 2-20 Northern Goshawk Inventory and Monitoring Technical Guide 2.4 Data Storage and Management The database manager is the bioregional coordinator, and the data will be housed wherever that coordinator is located (university, research station, or other location). In addition, survey results will be entered into NRIS Fauna for the national forests where sampled PSUs are located, following current NRIS Fauna data entry protocols for features, surveys, and observations. 2.5 Data Analysis 2.5.1 Estimating the Bioregional Frequency of Occurrence of Goshawks The parameter of interest is P, the proportion of all PSUs in a bioregion with goshawk presence. P is estimated from the proportion of all sampled PSUs with goshawk presence in each of the four strata, or Northern Goshawk Inventory and Monitoring Technical Guide Where N1 , N2 , N3 , and N4 are, respectively, the total number of PSUs in each of the four strata and P1 , P2 , P3 , and P4 are, respectively, the proportion of PSUs with goshawk presence in each of the four strata. The data are binary because the outcome of each visit is either goshawk presence or absence. Data from each sampled PSU are independent, because the sampled PSUs were randomly selected within each stratum. Data from each visit are independent, because the outcome of the first visit does not change the probability of detecting presence during the second visit, assuming that the presence status remains constant throughout each year’s sampling season. Each visit has a constant probability of missing presence when a goshawk is pres- ent, but those probabilities (qn and qf ) might differ between visit 1 and visit 2 because of differences in goshawk behavior between the nestling and fledgling stages. The detection probability is 1 – qn for the nestling stage and 1 – qf for the fledgling stage. To estimate P, the bioregion must first estimate six parameters: the proportion of PSUs with goshawk presence for each of the four strata— P1 , P2 , P3 , and P4—and the two probabilities of missing presence— qn and qf. These parameters are derived from the particular sequence of presence/absence data recorded for two visits to each site, which can be one of the following sequences: 00, 01, 1•, 10, or 11. The sequence labeled “1•” means visit 1 resulted in a detection and a second visit did not take place. To provide data for sequences 11 and 10, a proportion, r, of all PSUs 2-21 with detections during visit 1 must be randomly selected and visited a second time (see the Annual Design subsection under section 2.2.2). The bioregional coordinator may choose to include all PSUs (i.e., r = 1) with detections rather than a proportion of them, if funding is adequate. If not all PSUs have two surveys, then r needs to be selected to provide a minimum of 30 PSUs that are surveyed a second time. The probability that selected PSU j in stratum i will have a particular sequence of presence status (xij) follows (ignoring any adjustments related to sampling without replacement from a finite population) (Baldwin 2004, MacKenzie et al. 2002): The likelihood function will be the product of all the individual probabilities with the log of the likelihood equal to The estimation procedure results in values for P1, P2, P3, P4, qf, and qn, that maximize log L. Maximizing either the likelihood function or the log of the likelihood results in the same values of the parameter estimates, but it is numerically more convenient to use the log of the likelihood function. Standard errors will be estimated using a bootstrap process. Additional visits and missing values will almost certainly occur due to weather, snowpack, fire, lack of available crews, and other factors, but adjustments can be made to the definition of f to allow for such occurrences. For now the above formulas are adequate for planning purposes. Northern Goshawk Inventory and Monitoring Technical Guide 2.5.2 Assessing Changes in Goshawk Frequency of Occurrence Over Time 2.5.2 Assessing Changes in Goshawk Frequency of Occurrence Over Time The ability to detect changes in frequency of occurrence will depend on the persistence of goshawk presence from one year to the next in each sampled PSU. In a 2-year sampling period, there are four possible outcomes, expressed in the following contingency table, with probabilities p1, p2, p3, and p4 summing to 1 (table 2.3). 2-22 Northern Goshawk Inventory and Monitoring Technical Guide Table 2.3. Two-way contingency table of goshawk PSU survey outcomes. Table 2.3. Two-way contingency table of goshawk PSU survey outcomes. Year one Year two Present Not present Present p1 p2 Not present p3 p4 PSU = primary sampling unit. PSU = primary sampling unit. The off-diagonal probabilities, p2 and p3, represent the total proportion of sampled PSUs that switch from one outcome to the other between years 1 and 2 and are a measure of the variability in frequency of occurrence between the two years. As the difference between these off-diagonal values increases, the power to detect change between years decreases. Each bioregion will examine their data after 2 years to evaluate the amount of change that can be detected with specified power. If the amount of change and associated power are acceptable to the bioregion, then changes in goshawk frequency of occurrence can be evaluated at the end of 5 years and every subsequent 5 years of the monitoring program. In a 2-year comparison, the analysis for difference between years is done with McNemar’s t-test (two-tailed), a test for differences between paired proportions (O’Brien 1998). After multiple years, the analysis is a logistic regression. If a change in frequency of occurrence is 20 percent or greater for any 5-year period, the bioregional coordinator should assemble a team of line officers, biologists, and research scientists to assess whether an immediate change in land management within that bioregion is warranted. Northern Goshawk Inventory and Monitoring Technical Guide Other Environmental Variables A recommended procedure for evaluating the influence of habitat in goshawk population changes is to create a logistic model with habitat parameters entered as covariates. Other environmental factors may be examined, such as precipitation, prey abundance, or recreational use. Akaike’s Information Criterion (AIC) (Akaike 1973, 1974) is a useful tool for selecting a best-fitting model from several alternatives, each with different covariates. The AIC provides a relative measure to rank and compare competing models (Burnham and Anderson 2002). PSU landscape pattern variables serve as the primary measures of habitat. These variables represent landscape characteristics that are likely to influence goshawk abundance. In addition, vegetation data collected under the FIA program can serve as habitat data when relevant vegetation measures are analyzed. This analysis must take place at the bioregional scale, because data collected at specific FIA points in proximity 2-23 Northern Goshawk Inventory and Monitoring Technical Guide to goshawk detections will likely not be representative of the habitat used by the detected goshawk. 2.6.1 Expected Reports Results from each bioregional monitoring program will be summarized in an annual report using the standard format for scientific reports: Introduction, Methods, Results, and Discussion. The Introduction should present information and objectives specific to the bioregion. The Methods section can briefly outline the methods described in this technical guide and in Hargis and Woodbridge (2006), but it should also contain methods specific to the bioregion: how the sampling frame was stratified, number of PSUs in each stratum, and the range of dates for each of the two survey visits. The Results and Discussion will be specific to the bioregion. The annual report and subsequent publications are intended for use in the forest monitoring and evaluation reports of each forest in the bioregion. The bioregional coordinator may also choose to publish results after one or more years of monitoring in a peer- reviewed journal. When two or more bioregions have completed at least 5 years of monitoring, the USDA Forest Service National Headquarters Washington Office will prepare a comprehensive report of these monitoring results. The national report will display and compare results from each bioregion where monitoring has occurred. 2.6.2 Reporting Schedule 1. Years 1 through 4 1. Years 1 through 4 • GIS bioregional map of PSUs, showing PSUs selected for sampling. • Annual survey results for each sampled PSU, in tabular form and in GIS (and migrated to NRIS Fauna). • Annual estimate of goshawk frequency of occurrence (P) for the bioregion. • Statistical comparison of landscape pattern in surveyed PSUs with and without detections. At the end of year 3, sample size requirements will be recalculated based on empirical estimates of P1 to determine whether the sample size is adequate for estimating P at the desired level of precision. If funding is available, sample sizes will be increased if they are inadequate. 2-24 Northern Goshawk Inventory and Monitoring Technical Guide 2. Year 5 • Preliminary analysis of trend in goshawk frequency of occurrence. • Logistic regression of goshawk presence in relation to habitat characteristics from FIA data. • Updated comparison of landscape pattern in surveyed PSUs with and without goshawk presence. 3. Years 6 through 9 3. Years 6 through 9 • Updated annual estimate of trend in goshawk frequency of occurrence. • Updated annual estimate of trend in goshawk frequency of occurrence. 4. Year 10 • Estimated trend in goshawk frequency of occurrence. At year 10, power should be adequate to detect trends. • Estimated trend in goshawk frequency of occurrence in relation to habitat changes, using habitat characteristics from FIA data. 5. Products beyond 10 years Northern Goshawk Inventory and Monitoring Technical Guide Northern Goshawk Inventory and Monitoring Technical Guide 5. Products beyond 10 years • Estimates of changes in goshawk frequency of occurrence will likely improve with continued monitoring over time. Correlations of goshawk presence with landscape pattern and vegetation will become more apparent, enabling scientists to improve existing models of goshawk habitat relationships. 2-25 Northern Goshawk Inventory and Monitoring Technical Guide 2-26 3.1 Objectives This chapter describes the survey protocols adopted by the Forest Service for detecting goshawk presence, locating nests, and determining various stages of nesting and reproductive success. Most protocols described here are from published sources and are also used by other land management agencies and landowners throughout the range of the northern goshawk. The primary objectives of this chapter are to describe— The primary objectives of this chapter are to describe— • Protocols adopted by the USDA Forest Service for conducting goshawk surveys. • Rationale for selecting certain protocols to effectively and efficiently meet specific objectives. Northern Goshawk Inventory and Monitoring Technical Guide 3.2.1 Aspects of Goshawk Natural History Related to Survey Methodology 3.2.1 Aspects of Goshawk Natural History Related to Survey Methodology At the geographic scale, goshawks reproduce in a broad range of vegetative communities, ranging from extensive mature coniferous forest in coastal regions to small patches of aspen and pine in Great Basin shrubsteppe communities. At the landscape or home range scale, goshawks use a diverse array of habitat for foraging, both in vegetation type and degree of openness (Squires and Reynolds 1997). At the scale of nest-site selection, goshawks nest in the densest stands available, given the capability of the forest type; relatively high canopy closure also appears to be a uniformly important habitat characteristic across the range of the species (Hayward and Escano 1989). The size of forest patches used for nesting and the degree of forest heterogeneity within occupied landscapes appear to be highly variable across the species’ range. Nevertheless, numerous habitat studies and modeling efforts have found nest sites to be associated with similar factors, including proximity to water or meadow habitat, forest openings, level terrain or ‘benches’ of gentle slope, northerly aspects, and patches of larger, denser trees. Where forest habitats are well distributed, goshawk density is limited by territorial behavior, resulting in fairly regular spacing between the nests of breeding pairs. (See section 2.2.1.) Within territories, goshawks typically make between-year movements among several alternate nests up to 1.8 km apart (Squires and Reynolds 1997, Wood- bridge and Detrich 1994). Although most alternate nests are grouped within a stand or cluster of adjacent stands, a search radius of 0.5 km is required to locate about 75 3-1 3-1 Northern Goshawk Inventory and Monitoring Technical Guide percent of alternate nests used over a period of several years, and a search radius of 1 km is required to locate about 95 percent of alternate nests (Reynolds et al. 2005). Phenology of migratory movements, territory occupancy, and breeding exerts an important influence on survey timing and methods. Goshawk populations in boreal regions, the Great Basin, and portions of the Rocky Mountain region are at least partially migratory, whereas goshawks in Oregon, California, and the Southwest may remain in the vicinity of their territories year round (Keane 1999, Squires and Reynolds 1997). Adult goshawks typically return to nesting territories during March and early April (Squires and Reynolds 1997), and nest construction commences soon thereafter. Eggs are usually laid in mid-April to early May. 3.2.1 Aspects of Goshawk Natural History Related to Survey Methodology Incubation lasts about 30 days, resulting in hatching dates from mid-May through early June. Nestlings remain in the nest for 36 to 42 days, typically fledging from late June through late July. Newly fledged goshawks remain close to the nest tree for 2 to 3 weeks and then begin making longer movements until dispersal in mid- to late August (Kennedy et al. 1994, Squires and Reynolds 1997). Although notorious for their aggressive defense of nest sites, breeding goshawks are typically secretive and nest sites are often difficult to locate. At specific times, goshawks can be quite vocal in the vicinity of active nests, and this characteristic enables the use of taped vocalizations for locating them. Goshawks do not “sing,” however, so surveyors cannot depend on stereotyped behavioral responses to territorial calls—a technique used successfully to census owls. For goshawks, broadcast calling methods depend on eliciting defensive responses from adults or food-begging responses from fledglings or the adult female. Compared with territorial song responses, these responses vary much more and depend highly on reproductive chronology and status. Direct visual and auditory detectability of goshawks varies during the reproductive cycle. Before egg laying begins, detectability is high due to courtship vocalizations and over-canopy flights. During incubation and the early nestling stage, however, adult females are often unresponsive and detectability is very low. Defensive behavior by adult goshawks increases later in the nestling stage and throughout the fledgling stage, resulting in increased detectability. As fledglings reach 2 to 3 weeks of age, they begin to respond to food-begging calls, and their highly vocal responses account for most detections late in the season (July to August) (USDA Forest Service 2000). Survey methods also depend on indirect detection of goshawks through signs such as old nest structures, molted feathers, feces, and remains of prey. Abundance of signs tends to increase steadily throughout the breeding season, and signs may be detected at territories occupied by nonbreeding goshawks. 3-2 3-2 Northern Goshawk Inventory and Monitoring Technical Guide Female goshawks begin molting primaries and secondaries during incubation; males molt later in the summer (Henny et al. 1985). Molting results in scattered feathers that are visible on the ground in the immediate vicinity of active nests or roost areas beginning in May and increasing through the breeding season. Detection of multiple feathers from an adult female goshawk is strongly indicative of an active nest site nearby. Northern Goshawk Inventory and Monitoring Technical Guide 3.2.1 Aspects of Goshawk Natural History Related to Survey Methodology 3-3 3-3 • Food delivery call—a short, guttural kuk, usually given singly or widely spaced, given by the male goshawk upon entering the nest area with prey. This call typically elicits wailing and frantic begging from the female goshawk and older nestlings and from fledglings during the postfledging dependency period. • Food delivery call—a short, guttural kuk, usually given singly or widely spaced, given by the male goshawk upon entering the nest area with prey. This call typically elicits wailing and frantic begging from the female goshawk and older nestlings and from fledglings during the postfledging dependency period. The ability of any particular survey method to determine territory occupancy or reproductive status is affected by the probability that a territory is occupied or by the probability of a territory having an active or successful nest. Work conducted to date indicates that northern goshawks exhibit high degrees of annual variation in reproduction (Keane 1999; Reynolds and Joy 1998, 2006). Less work has been conducted on determining annual variation in territory occupancy, largely because determining occupancy in territories without successful nests requires intensive and extensive surveys early in the breeding period and adult goshawks on territories without successful nests are difficult to detect. Representative data from the Sierra Nevada and Kaibab Plateau indicate the magnitude of annual variation observed (table 3.1) (Keane 1999, Reynolds and Joy 1998). The proportion of territorial pairs with active nests varied from 22 to 86 percent on the Kaibab Plateau in Arizona during the 1990s (Reynolds and Joy 1998). Annual variation in reproduction is associated with variation in prey and weather (Keane 1999). Annual variation in reproduction can have a large impact on the outcome of surveys. For example, if a survey relies solely on Broadcast Acoustical Surveys conducted during the nestling and fledgling stages, such survey efforts could have very low probabilities of locating territories and/or determining occupancy and reproductive status because response rates of nonbreeding territorial adult goshawks or pairs with failed nests is unknown and probably lower and more variable than at territories with successful nests. Table 3.1. Variation in territory occupancy, nest activity, and nest success for northern goshawks observed in the Lake Tahoe Region, California, and Kaibab Plateau, Arizona, during 1992–96. 2 Percentage of all occupied territories fledging at least one young. g pl g g y g Sources: Lake Tahoe Region data: Keane (1999). Kaibab Plateau data: Reynolds and Joy (1998). 1 Percentage of territories meeting criteria for “confirmed” occupancy. (See 3.5.2). 3.2.1 Aspects of Goshawk Natural History Related to Survey Methodology Molted feathers of male goshawks tend to be more widely scattered. Goshawks forcefully eject their feces, resulting in long white streaks (“whitewash”) on the forest floor and downed trees near favored perch sites and active nests. While these deposits are not reliably diagnostic of occupancy by goshawks, they do indicate regular presence of a large raptor and areas deserving focused searches. During incubation, female goshawks defecate from perch sites away from the nest; detectable accumulations of whitewash do not occur at the nest until the nestlings are about 10 days old and begin defecating over the nest edge (typically late May to early June). Remains of prey items are another important source of signs used in goshawk surveys. Goshawks frequently pluck or dismantle their prey on exposed sites such as downed logs, stumps, or snags, leaving patches of feathers and fur. These sites, known as “plucking posts,” can be scattered throughout the territory, but a few typically occur near nest areas, often upslope from the nest or in an adjacent opening. Detection of patches of feather or fur pulled from medium- to large-sized prey species such as squirrels, hares, grouse, woodpeckers, and jays is highly suggestive of goshawk presence, and such areas deserve focused surveys. During courtship and early nest building, goshawks will add fresh material to multiple nests before settling on a single nest for the breeding effort. Dawn courtship vocalizations may occur at these extra nests, although the active nest may be hundreds of meters’ distance. Detection of nests built-up with new sticks and green sprigs, in combination with other signs such as molted feathers and whitewash, indicates an occupied territory. Such nests are frequently misclassified as abandoned or failed nests during survey and monitoring efforts. Largely silent outside of the breeding season, goshawks become quite vocal during courtship and nesting. At least four distinct vocalizations may be detected during goshawk surveys. • Alarm call—a harsh kak-kak-kak repeated many times, typically directed toward intruders near the nest but occasionally used between pair members. • Wail call—a loud, plaintive, drawn-out call used in communication between pair members. During nesting, female goshawks often wail from the nest, possibly a form of food begging. • Food begging call—a thin, plaintive wail given by nestling and fledgling goshawks to solicit food delivery or express hunger. territories fledging at least one young. 3.2.1 Aspects of Goshawk Natural History Related to Survey Methodology Variable Lake Tahoe Region Kaibab Plateau 1992 1993 1994 1995 1992 1993 1994 1995 1996 Number of territories 17 17 19 24 37 64 82 88 100 Percent occupied1 100.0 82.4 84.2 87.5 95.3 89.0 38.6 75.0 64.5 Percent active nests 100.0 76.5 47.4 70.8 86.5 76.6 22.0 48.9 39.0 Percent successful nests2 82.4 47.1 36.8 58.3 59.0 62.5 15.8 37.5 29.0 1 Percentage of territories meeting criteria for “confirmed” occupancy. (See 3.5.2). 2 P t f ll i d t it i fl d i t l t Table 3.1. Variation in territory occupancy, nest activity, and nest success for northern goshawks o Region, California, and Kaibab Plateau, Arizona, during 1992–96. ry occupancy, nest activity, and nest success for northern goshawks observed in the Lake Tahoe ab Plateau, Arizona, during 1992–96. g pl g g y g urces: Lake Tahoe Region data: Keane (1999). Kaibab Plateau data: Reynolds and Joy (1998). Northern Goshawk Inventory and Monitoring Technical Guide 3-4 During courtship and nest building, goshawks are highly susceptible to human disturbance and have been recorded to abandon nest areas following human intrusion. Incubating females often appear to be unmoved by human intrusion near their nest, but they may interrupt incubation for extended periods to defend the nest. Surveys involving physical entry into potential nesting habitat should not be conducted until late May to June. Early confirmation (but no earlier than May 15) of territory occupancy should be determined by Dawn Acoustical Surveys or rapid visual checks of known nests from a distance. 3.3.1 Survey Methods This section describes four basic methods for conducting surveys for northern goshawks. The relative advantages and disadvantages of each method depend on the objectives of a given survey. Dawn Acoustical and Intensive Search Surveys are time- and labor-intensive methods with high detection rates; they are most appropriate for surveys focused on known goshawk sites and patches of high-quality habitat. Broadcast Acoustical Surveys, on the other hand, are better suited for covering large areas efficiently. These methods can be used singly or in combination to achieve a variety of objectives. Examples of three common objectives and standardized survey approaches are described under section 3.6 Survey Applications. 3.2.2 Sampling Designs The survey methods described in this chapter are intended for a variety of purposes, and the design used for each purpose will vary. If the objective is to conduct an inven- tory over a large area, the sampling design can be a stratified random sample or sys- tematic sample from a randomly selected start point within a predetermined inventory area. The importance of using a specific sampling design and ensuring randomization cannot be overemphasized for large area inventories. Convenience sampling in roaded areas and within proposed projects does not constitute an area inventory. The biore- gional monitoring design described in chapter 2 provides a useful framework for large area inventories, because sample units are based on approximate size of goshawk territories and stratification provides an efficient use of inventory funds. In general, a specific sampling design is needed if the objective is to obtain an estimate from a sample of goshawk nests or territories rather than to conduct a complete census. If the objective is to determine whether goshawks are actively nesting within a proposed project area, the design will be more in keeping with a census, because it will be necessary to survey all potential habitats with a variety of survey techniques to maximize the likelihood of finding an active nest. The rigor of a sampling design is less important than the survey outcome, and randomization is not needed. It is important, however, to ensure that habitats considered to be of marginal quality are included in the survey to minimize the probability of missing a nest. If the objective is to map the distribution of goshawk territories within a prescribed area, such as a ranger district, the approach will depend on the amount of knowledge acquired before the mapping effort. If little is known about goshawk distribution and the area is large, a stratified random sample is recommended initially. After certain territories are known and mapped, the location of further surveys can be based on gaps between known territories, using approximate territory size and the physical layout of potential habitat in the unsurveyed area. See section 3.6.3 Large Area Survey Application for details. Northern Goshawk Inventory and Monitoring Technical Guide 3-5 Northern Goshawk Inventory and Monitoring Technical Guide 3-5 Dawn Acoustical Survey This method is based on detection of courtship vocalizations and flight displays of goshawks at their nest sites. It consists of establishing “listening stations” in close proximity to known nest stands or patches of suitable habitat and conducting 1½- hour listening periods at dawn during the early breeding season (Dewey et al. 2003, Penteriani 1999). Protocol 1. Establishment of survey stations. Listening stations should be positioned within 150 m (meters) of all habitats to be surveyed. Use aerial photographs to determine point locations providing optimal coverage of suitable habitat within a radius of 150 m (7.1 ha [hectares]). To reduce attenuation of sound by surrounding vegetation or landforms, locate stations on slightly elevated positions, whenever possible, but not on ridges or in large openings. Efficiency may be increased by location of stations on roads; however, tradeoffs with position may occur within habitat patches. Stations must be clearly marked to allow for finding their location in darkness. Whenever possible, establish multiple stations approximately 300 m apart to achieve simultaneous coverage of entire survey area by multiple observers. 2. Timing of surveys Seasonal timing. To coincide with the peak of courtship vocalizations by goshawks at their nest sites, surveys should be conducted during the month preceding egg laying. Reproductive chronology likely varies between geographic regions and elevations, and local information should be used to estimate egg-laying dates. Backdating from estimated ages of nestlings can be used to determine reproductive chronology; use Boal (1994) to estimate Seasonal timing. To coincide with the peak of courtship vocalizations by goshawks at their nest sites, surveys should be conducted during the month preceding egg laying. Reproductive chronology likely varies between geographic regions and elevations, and local information should be used to estimate egg-laying dates. Backdating from estimated ages of nestlings can be used to determine reproductive chronology; use Boal (1994) to estimate 3-6 Northern Goshawk Inventory and Monitoring Technical Guide ages of nestlings, and add 33 days incubation period. For example, if nestlings are typically 15 days old on June 15, surveys should be conducted in the area between March 15 and April 28. Note that during years with particularly cold or wet spring weather, onset of incubation may be delayed for up to 1 month. If no detections of goshawks are heard during the first listening session, a repeat session should be conducted before May 1. Two sessions are required to assign “unoccupied” status to the area surveyed. Session timing. The observer should arrive and be settled at the listening station at least 45 minutes before sunrise. The listening session should continue until 1½ hours after sunrise. Plan carefully so that the entire listening session can be conducted without interruptions for moving position, warming, eating, potty breaks, and other distractions. 3. Listening session methods. During each listening session, record start and stop time, actual sunrise onset, time and duration of goshawk vocalizations, type of goshawk vocalizations, and direction (bring compass) and estimated distance of goshawk vocalizations. To ensure consistency of data collection, a standard field data collection form (appendix D) should be used. Dewey and others (2003) reported a variety of calls detected during dawn acoustical surveys in Utah. Calls included variations of the alarm call (kak-kak-kak) (Squires and Reynolds 1997) and plaintive wail call (Squires and Reynolds 1997). Length of vocalizations varied from short, one-note call segments to series of alarm calls and wails lasting up to 10 seconds. 4. Locating nest sites. Northern Goshawk Inventory and Monitoring Technical Guide 2. Timing of surveys Auditory detection of goshawks during courtship indicates occupancy of the surveyed forest patch; subsequent location of the nest should not be attempted until after the estimated date of hatching. Intensive Search Surveys should be employed to locate nests. 5. Observer training. The principal requirement of this method is familiarity with vocalizations of goshawks and other species likely to be detected during surveys. Taped examples of goshawk alarm and wail calls, as well as vocalizations of the pileated woodpecker (Dryocopus pileatus), northern flicker (Colaptes auratus), sapsuckers (Sphyrapicus spp.), and Cooper’s hawk (Accipiter cooperii) should be memorized and reviewed before conducting surveys. An important aspect of Dawn Acoustical Surveys is observer transportation during early spring when snow conditions may limit access to many survey areas. Safety and logistical feasibility are important concerns when using snowmobiles and skis before sunrise, often in rugged terrain. Prior experience with forest carnivore, great gray owl (Strix nebulosa), and goshawk surveys has shown, however, that safe, 3-7 3-7 efficient access is possible under these conditions, particularly if observers work in pairs. Training in snowmobile use, winter travel safety, and communications is essential for employment of this method. Rationale Primary advantages. Surveys can be conducted early (February to April), about 2 to 4 months before Broadcast Acoustical Surveys can be initiated, and these surveys have a very high probability of detecting goshawks if they are present (Dewey et al. 2003, Penteriani 1999). In addition, because surveys are conducted during early courtship, results are less affected by nest failure. Only one to two listening sessions are required to obtain detections (Dewey et al. 2003). Penteriani (1999) reported detection rates of 100 percent at occupied goshawk nests in hardwood forests of southern France. Validation studies by Dewey et al. (2003) demonstrated a 90-percent detection rate at listening points less than 152 m from 20 occupied goshawk nests during March and April in conifer/conifer-aspen forests in Utah. Goshawks were detected during Dawn Acoustical Surveys at 19 of 20 (95 percent) occupied nest stands in northern California (Keane and Woodbridge 2002). Six of the occupied sites contained nonbreeding pairs. Primary disadvantages. First, this method may be logistically difficult to apply in areas where access is limited by snow during the period when surveys would be conducted; however, prior success with forest carnivore surveys suggest that use of snowmobiles and skis need not represent an obstacle. Second, listening points survey a limited area (150-m radius); therefore, many stations may be required to cover large areas such as timber sales. If only 1 year of survey is used, this method may not identify nest stands that are unoccupied during the year of survey. Only one station (17.1 ha) can be surveyed per observer per day. 3-8 3-8 Northern Goshawk Inventory and Monitoring Technical Guide Northern Goshawk Inventory and Monitoring Technical Guide Intensive Search Survey This method combines visual searches for signs of goshawk presence (nests, white- wash, prey remains, molted feathers) along closely spaced (20 to 30 m) transects (Reynolds 1982), with Broadcast Acoustical Surveys. Goshawk calls are broadcast along within-stand transects simultaneously while visual searches are taking place. This method is best applied to smaller units of area (4 to 40 ha), following stratifica- tion of habitat quality (Reynolds 1982, USDA Forest Service 2000). Northern Goshawk Inventory and Monitoring Technical Guide Protocol 1. Transect routes and coverage. Use aerial photographs and transportation maps to determine placement and direction of transects for optimal coverage of habitat to be surveyed. Determine compass bearing to be used in each survey. Number of observers (and simultaneous transects) is determined by size of habitat patch or unit to be surveyed; typically a minimum of three observers is required. Attempt to ‘anchor’ start and end points of transects on roads, trails, streams, or other features. 2. Timing of surveys. Intensive Search Surveys require presence of multiple observers within nesting habitat and are likely to cause excessive disturbance to breeding goshawks if conducted too early in the nesting period. Do not initiate surveys before the estimated hatching date. The effectiveness of Intensive Search Surveys increases as the breeding season progresses, as nestling goshawks become more vocal, and as whitewash, molted adult feathers, and other signs accumulate in the vicinity of the nest. Intensive Search Surveys are most effective during late June through August. Searches may be conducted until snowfall; however, detections will increasingly depend on signs as adult and young goshawks move out of the nest area in the fall, and signs are lost due to precipitation and leaf fall. 3. Number of surveys. If conducted by experienced observers during late June, July, or August, a single Intensive Search Survey may be sufficient to determine goshawk presence within a habitat patch. If any sign of the presence of goshawks (feathers, old nests) is detected during searches, however, repeated surveys are necessary to determine nest core location (unless occupied territory status is assumed). Data from Keane and Woodbridge (2002) indicate that single-visit detection rates obtained with this method are about 97 percent at goshawk sites with active nests, 73 percent at sites with occupied nonbreeding status, and 43 percent at unoccupied historical nest stands (table 3.1). If survey objectives require detection of sites with nonbreeding adults, then two visits are required to achieve detection rates greater than 90 percent. 3-9 3-9 Northern Goshawk Inventory and Monitoring Technical Guide 4. Equipment needed. Broadcast system, self-sealing bags and labels, flagging, compass, and reference feather collection. 4. Equipment needed. Broadcast system, self-sealing bags and labels, flagging, compass, and reference feather collection. 5. Conducting intensive searches. Protocol Following a predetermined compass bearing, observers should walk parallel transects spaced 20 to 30 m apart (30 m spacing may be used in open, tall-canopied stands where visibility is high). Mark the start point of each transect with individually marked flagging to allow retracing of the survey. The middle of the three observers should broadcast recorded goshawk vocalizations at points every 250 m along the transect, on every third transect line (all observers follow procedure 3 under Broadcast Acoustical Survey). Surveyors should attempt to maintain 250x250 m spacing of broadcast stations. Searches should be conducted at a leisurely pace, allowing ample time for scanning the ground for signs, logs and low limbs for plucking sites, and all trees for nest structures. Any signs encountered (feathers, prey remains) should be collected in self-sealing bags labeled by transect location. Visual or auditory detections of goshawks should be recorded by transect location and detection type. Careful attention to the location of adjacent observers, especially the middle (broadcasting) observer, and to the compass bearing is important for maintaining consistent spacing of individual transects. At the end of each individual transect, each observer should stop, flag the transect end point, and move to the start point of the next transect. If transects are directed back into the same habitat patch, the “hinge” or end observer should space the new transect no more than 20 m from the previous transect; this spacing reduces the potential of unsurveyed strips of habitat between transect groups. To ensure consistency of data collection, a standard field data collection form (appendix D) should be used. 6. Postsurvey activity. After completing a survey, the observers’ notes, data forms, and collections should be immediately reviewed. Any collected feathers should be identified by comparison with reference samples. The USDA Forest Service guide, Feathers of Western Forest Raptors and Look-Alikes, located on the CD inside the back cover of this technical guide, can be used to aid in identifying feathers collected during surveys. Prey remains should be identified and the frequency of occurrence of each prey type should be assessed for each transect area. Any reports of whitewash and prey remains should be mapped, based on transect location notes. The entire area actually surveyed should be mapped. Northern Goshawk Inventory and Monitoring Technical Guide Protocol Although whitewash and/or prey remains may indicate presence of other raptors, whitewash and remains of typical goshawk prey (e.g., snowshoe hare [Lepus americanus], Steller’s jay (Cyanocitta stelleri), northern flicker, and various species of grouse and tree squirrel) are suggestive of goshawk presence and trigger “possible 3-10 Northern Goshawk Inventory and Monitoring Technical Guide presence status” and followup survey of the suitable habitat surrounding (min. 300- m radius) the site. This need for a followup survey is particularly true if the initial survey was conducted early in the season, before July. Because female goshawks molt during incubation and nest attendance, their molted flight feathers are typically found in the immediate vicinity of occupied nests. Male goshawks molt later in the season, and their feathers may be found over a larger area. Detection of goshawk feathers triggers “occupied status” and followup surveys of the suitable habitat surrounding the site (min. 300-m radius) to locate the active nest. If visual or auditory detection of a goshawk is made during an Intensive Search Survey and signs are present in the stand surveyed, the area should be considered oc- cupied. (See section 3.5.) To locate the nest, followup surveys of the suitable habitat surrounding the site (300-m radius) should be conducted 1 to 2 weeks after the initial survey. Visual or auditory detection of a goshawk made during an Intensive Search Survey, but with no signs encountered in the stand, suggests that a nesting area may be located adjacent to the area searched. Broadcast Acoustical Surveys of the stand and adjacent stands should be conducted. Rationale Primary advantages. Compared to the Broadcast Acoustical Survey, the Intensive Search Survey yields a higher probability of identifying nest stands when goshawks are not currently breeding or nests have failed (table 3.2), and it can detect alternate but inactive nest stands. If experienced observers conduct surveys, this method may be completed within one breeding season and provide high confidence that the area searched does not contain a goshawk breeding site. Conclusions drawn from searches conducted within a limited area during a single season, however, may not be applicable to surrounding habitat. Northern Goshawk Inventory and Monitoring Technical Guide 3-11 Table 3.2. Comparison of detection rates of two survey methods for northern goshawks. Method Territory plot status Nesting Occupied nonnesting Unoccupied–old nests1 Broadcast Acoustical Survey One visit 0.90 0.64 0.36 Two visits 0.94 0.87 0.59 Three visits2 1.00 0.96 0.73 Intensive Stand Search Survey One visit 0.97 0.74 0.43 Two visits 1.00 0.93 0.67 Three visits 1.00 0.98 0.81 1 Rate is for detection of old nests at unoccupied territory plots. 2 Three-visit probability calculated using binomial expansion of one-visit detection p. Source: Keane and Woodbridge (unpublished data). Table 3.2. Comparison of detection rates of two survey methods for northern goshawks. 1 Rate is for detection of old nests at unoccupied territory plots. 3-11 Primary disadvantages. Intensive Search Surveys are labor intensive and best suited to assessment of small patches of habitat 4 to 40 ha in size. A survey requires a minimum of three people to be effective. This method is not likely to detect goshawks if the nest is farther than 200 m from the area being surveyed. The effectiveness of this method also can vary depending on the time of the breeding period during which it is conducted. In general, the effectiveness of this method increases with time during the breeding season as more signs may be present in occupied nest stands later in the breeding period. Surveys conducted later in the breeding period, however, may be less effective in territories with early nest failures, particularly in regions where summer monsoons can reduce detection of whitewash. This method depends highly on detection of signs and nest structures, but these signs may be present regardless of current goshawk reproductive status. For this reason, detecting signs or nests triggers an “occupied” status for the stand surveyed and surrounding area, regardless of current reproductive status. Northern Goshawk Inventory and Monitoring Technical Guide Rationale Additional surveys during 1 or more years may be required to locate the nest site and establish appropriate management zones. 3-12 Northern Goshawk Inventory and Monitoring Technical Guide Broadcast Acoustical Survey This method is based on broadcast of taped goshawk calls at points along transect routes to elicit responses from defensive territorial adult goshawks and their young. Often termed the “Kennedy-Stahlecker Protocol,” it is currently the standard method used by the USDA Forest Service and many others. The efficacy of this method has been evaluated in terms of response rates at known successful nests (Joy et al. 1994, Kennedy and Stahlecker 1993, Watson et al. 1999), and recently at territories occupied by nonbreeding goshawks (Keane and Woodbridge 2002). Protocol The protocol is based on the methods described by Kennedy and Stahlecker (1993), with refinements from Joy et al. (1994) and Watson et al. (1999). Adjustments to the number of surveys required and spacing of calling stations were made to optimize probability of detection and survey effort and cost. 1. Establishment of survey transects and stations. Before initiating surveys, use aerial photographs and topographic maps to determine optimal placement of survey transects. Draw detailed maps of survey routes and station location and provide them to crews conducting surveys. When possible, establish start and end points of transects along existing roads, trails, streams, or other landforms. The maximum distance between parallel transects should be 250 m. Minimize number of stations located on roads, unless roads are entirely within the habitat of interest. Call stations should be located 200 m apart along each transect. To increase coverage, offset station locations on adjacent transects by 100 m. The most important factor in transect and station placement is completeness of coverage; to achieve acceptable confidence in survey results, all suitable habitat should be within 150 m of a calling station. For project surveys, the survey area should include the proposed project area plus an additional buffer beyond the project boundary. For projects involving significant modification of forest structure (e.g., commercial thinning), the survey should extend 800 m beyond the project boundary. This distance corresponds to the mean radius of the postfledging area (about 200 ha) and will allow for detection of territories that overlap the project area. For projects that involve minor modification of forest structure (underburning, light underthinning, light salvage) surveys need extend only 400 m beyond the project boundary. 2. Timing of surveys. Surveys should be conducted during the nestling and fledgling stages, including early postfledging dependency. This period corresponds to June 1 to August 15 over much of the range of the northern goshawk. When possible, use 3-13 Northern Goshawk Inventory and Monitoring Technical Guide local information on nestling ages and dates to estimate hatching dates. After August 15, many fledgling goshawks will have moved out of the immediate vicinity of the nest stand, making location of the actual nest more difficult. Survey results might be unreliable after August 30. Surveys may begin half an hour before sunrise and should cease half an hour before sunset. 3. Calling procedure. Protocol At each calling station, broadcast at 60 degrees from the transect line for 10 seconds, then listen and watch for 30 seconds. Repeat this sequence two more times, rotating 120 degrees from the last broadcast. Repeat the three-call sequence again. After the last sequence, move to the next station. Move (walk) between stations at an easy pace, listening and watching carefully for goshawk calls and signs. The majority of time will be spent walking between stations, so it is important to be alert for goshawks approaching, often silently, to investigate the surveyor. Do not survey from vehicles or use vehicles to move between stations. Use of two observers will likely enhance the probability of visual detections of goshawks; however, experienced surveyors may conduct surveys singly (unless it is part of the bioregional monitoring design, in which case two surveyors is mandatory). To avoid misidentifying broadcasts of coworkers, simultaneous surveys should be conducted no closer than two transect widths apart. • During the nestling stage, broadcast the adult alarm call. • During the late nestling and fledgling stages, broadcast the juvenile begging or wail call. This call is more likely to elicit responses from juvenile goshawks. Do not survey under conditions such as high winds (greater than 15 mph) or rain that may reduce ability to detect goshawk responses. Record the detection type, compass bearing, station number, and distance from transect of any responses detected. Attempt to locate the goshawk visually and determine the sex and age (adult versus juvenile/fledgling) of the responding individual. To ensure consistency of data collection, a standard field data collection form (appendix D) should be used. 4. Number of surveys. Surveys should be conducted at least twice during a given year. Detection rates of one-, two-, and three-visit surveys are given in table 3.1. Depending on the survey objective, surveys may need to be conducted during 2 consecutive years. See section 3.6 Survey Applications for discussion of multiyear surveys. 5. Equipment. Effective coverage of a survey area depends on the surveyor’s ability to broadcast sound that can be detected at least 200 m from the source. Kennedy and Stahlecker (1993) and Fuller and Mosher (1987) recommend using equipment 3-14 Northern Goshawk Inventory and Monitoring Technical Guide producing at least 80 to 110 dB output at 1 m from the source. Protocol Regardless of the type of equipment used, broadcast goshawk calls should be audible at least 200 m from the calling station. Until recently, the most commonly used broadcast equipment has been a small personal cassette player connected to a small megaphone. Recent developments include CDs and MP3 players as storage media and improved digital amplifiers that store goshawk calls on internal chips. Other equipment required for surveys include compass, binoculars, flagging or other station markers, and self-sealing bags and labels for feathers and prey remains. 6. Preparation for survey. Study the appearance and typical flight patterns of goshawks and similar species before conducting surveys. Recent field guides should be consulted to review the field marks of male, female, and juvenile goshawks, as well as those of Cooper’s hawks and red-tailed hawks (Buteo jamaicensis). Practice recognizing goshawks under field conditions before conducting surveys. Training sessions should include visits to a few known nests to enable survey personnel to develop familiarity with goshawk behavior and vocalizations. Identification of goshawk nests, plucking posts, feathers, whitewash patterns, and typical prey remains are also important aspects of survey preparation. The USDA Forest Service guide, Feathers of Western Forest Raptors and Look-Alikes, located on the CD inside the back cover of this technical guide, may be used to aid in identifying feathers collected during surveys. Learn the typical vocalizations of goshawks and species with similar calls by listening to recorded examples. Examples of high-quality recordings of goshawks and sound-alikes are available from the Cornell Laboratory of Ornithology program, Birds in Forested Landscapes, and from the USDA Forest Service recording, Voices of Western Forest Raptors, included in the CD located inside the back cover of this technical guide. Field experience is important in learning to distinguish the vocalizations of goshawks from those of mimics such as gray jays (Perisoreus canadensis) and Steller’s jays. These species are capable of producing excellent imitations of goshawk calls, particularly the female wail and juvenile begging call, and often respond to broadcast calls. Pileated woodpeckers, northern flickers, sapsuckers, and Cooper’s hawks also have calls similar to those of goshawks. 7. Interpretation of goshawk responses. Surveyors should be aware of different types of responses likely to be encountered during surveys. Joy et al. (1994) classified responses into three categories: vocal nonapproach, silent approach, and vocal approach. The frequency of each response type varies between sexes, ages, nesting stage, and vocalization broadcasted. Northern Goshawk Inventory and Monitoring Technical Guide Protocol Northern Goshawk Inventory and Monitoring Technical Guide 3-15 Northern Goshawk Inventory and Monitoring Technical Guide • Vocal nonapproach—goshawks may respond by perching away from the surveyor, often at the nest, and vocalizing. This response is commonly elicited from older nestlings and juveniles as begging calls, in response to broadcast of either alarm or food-begging calls. • Silent approach—goshawks, particularly adult males, will frequently fly silently in the direction of the surveyor to investigate and may be visible only briefly. Silent approach by female goshawks during the nestling and fledgling stages typically indicates an active nest within 200 m, but male responses may be long distances from the nest. Failure to detect this common response is a likely cause of false negative survey results. • Vocal approach—commonly in response to broadcast of alarm calls, adult female goshawks (and, less often, males) frequently fly toward the surveyor while vocalizing alarm calls. This response typically indicates the active nest is within 200 m, particularly if the adult goshawk remains in the vicinity of the surveyor. 8. Locating active nests. Searches for active nests may be conducted immediately following goshawk detections (particularly vocal approaches or attacks); however, it is often necessary to review the results from multiple surveys and stations from a larger area to approximate the likely areas to search. Response type, distance and direction from transect, and distribution of habitat should be plotted on aerial photographs, and the Intensive Search Survey method should be employed. 8. Locating active nests. Searches for active nests may be conducted immediately following goshawk detections (particularly vocal approaches or attacks); however, it is often necessary to review the results from multiple surveys and stations from a larger area to approximate the likely areas to search. Response type, distance and direction from transect, and distribution of habitat should be plotted on aerial photographs, and the Intensive Search Survey method should be employed. Northern Goshawk Inventory and Monitoring Technical Guide Rationale Primary advantages. The Broadcast Acoustical Survey is a commonly used, standardized protocol with estimates of effectiveness at breeding and nonbreeding sites and with a known rate of effort and cost (Joy et al. 1994, Watson et al. 1999). It is efficient (table 3.2) and applicable to large areas of land. In the protocol described here, minor adjustments to the number of surveys required and spacing of calling stations were made to optimize probability of detection and survey effort and cost. Primary disadvantages. Effectiveness has been studied largely at active nests (Watson et al. 1999, Kimmel and Yahner 1990, Kennedy and Stahlecker 1993). Effectiveness is likely reduced at nonbreeding or failed sites (Keane and Woodbridge 2002) (table 3.2). Studies of territory occupancy, breeding, and success rates suggest that 20 to 80 percent of territories could be missed in a given year due to nonbreeding or failed reproductive status if detection rates are low at these sites. A high proportion of responses are from fledglings, which are not present at failed or nonbreeding sites. Multiple years of surveys may partially mitigate this factor. Recent work reported by Watson et al. (1999) suggest that increased numbers of surveys per year or closer spacing of sample points (compared to Kennedy and Stahlecker 1993) may be needed to increase probabilities of detecting active nest sites. 3-16 Northern Goshawk Inventory and Monitoring Technical Guide Watson et al. (1999) reported that the probability of detecting an active nest was affected by the distance from the call point and the number of broadcast samples conducted at a call point. They reported single-visit probability of detections of 42 percent at 100 m from active nests, 25 percent at 250 m, and 20 percent at 400 m. Based on cumulative response curves, they estimated that single visits to nests had probability of detections of 60 percent at 100 m and 38 percent at 250 m. Kennedy and Stahlecker (1993) reported detection rates of 73 percent during the nestling stage and 77 percent during the fledgling stage at 100 m from active nests based on single visits. Little is known about the probability of detecting nonbreeding adult goshawks at inactive territories or territories with failed breeding attempts (Kennedy and Stahlecker 1993, Kimmel and Yahner 1990, Watson et al. 1999). Northern Goshawk Inventory and Monitoring Technical Guide Aerial Nest Survey Primary advantages. In coniferous and mixed-forest ecosystems, visibility of goshawks is strongly limited by dense evergreen forest canopies, and survey methods require visual searches from beneath the canopy. Surveys from airplanes and helicopters, however, may be employed in some deciduous forest types in which nests are not concealed by vegetation. This method has been successfully used to locate occupied goshawk nests in pure stands of quaking aspen (Populus tremuloides) in the Great Basin (Herron et al. 1985, Younk and Bechard 1994). Studies of the effectiveness of aerial surveys for goshawks have not been conducted, and detection rates are unknown. Primary disadvantages. Aerial searches for tree-nesting raptors must be conducted at slow speeds (45 to 70 km/hr: Fuller and Mosher 1987) to allow visual access to the most trees within a stand. For this reason, helicopters and ultralight craft are probably best suited for goshawk surveys under typical conditions. Younk and Bechard (1994) used helicopters to survey widely spaced, relatively small stands of riparian aspen in Nevada. Their surveys were conducted before the emergence of aspen catkins in April and consisted of systematic searches for stick nests with signs of breeding activity. Foot searches were later employed to confirm goshawk presence and breeding status at nests identified from the air. It is unknown whether aerial surveys may be applicable in other deciduous forest systems, such as the Great Lakes Region, where stands of aspen may be intermixed with coniferous forest types. Rationale Keane and Woodbridge (2002) reported single-visit detection rates of 64 percent at occupied territories with failed nests or nonbreeding adults, compared with 90 percent at sites with active nests (table 3.1). Response rates are lower and more highly variable at territories with failed reproductive attempts, and particularly at territories with nonbreeding adults, relative to territories with active and successful nests. Several issues require further consideration and research. First, further research is needed to evaluate the relationship between detection rates and distances between sample points. Second, given uncertainty regarding the efficacy of this method in detecting nonbreeding goshawks or failed nest attempts, multiyear surveys are required to have a high confidence in locating active nests (DeStefano et al. 1994). Third, this method is likely very sensitive to observer bias (observer experience and motivation). Finally, the method is labor intensive and can be difficult to fully implement in steep, rugged terrain. 3-17 Northern Goshawk Inventory and Monitoring Technical Guide Northern Goshawk Inventory and Monitoring Technical Guide Northern Goshawk Inventory and Monitoring Technical Guide 3.4 Data Storage All data on goshawk observations and surveys will be entered into the National Resource Information System (NRIS) Fauna application of the USDA Forest Service using NRIS Fauna version 1.3.1 or later versions as they become available. The Feature, Observation, and Survey tools are to be used for entering goshawk observation and survey data. Refer to the NRIS Fauna User Guide and Web site (http://www.fs.fed.us/emc/nris/fauna/) for instructions on how to enter data into NRIS Fauna. Both classroom and Web conference training sessions are available and may be tailored, on request, to specifically discuss entry of goshawk monitoring data. The capability of NRIS Fauna may be expanded in the future to include a Goshawk Observation and Survey Tool. Method Validation Protocols for goshawk surveys are well established, and standardized surveys have been conducted on this species for more than 12 years (Joy et al.1994, Kennedy and Stahlecker 1993, USDA Forest Service 2000). No evaluations of the potential bias introduced from observer variation on northern goshawk survey methods and results have been conducted. Observer variation has been demonstrated to influence the effectiveness of wildlife surveys (Verner 1985, Verner and Milne 1989). Experience and motivational levels of observers conducting the fieldwork likely have significant effects on the efficacy of northern goshawk surveys. Surveys are often conducted by seasonal technicians with little or no experience with northern goshawk behavior, identification, or survey methodologies. Keane and Woodbridge (2002) compared detection rates of experienced and inexperienced teams conducting Broadcast Acoustical and Intensive Search survey protocols. 3-18 Northern Goshawk Inventory and Monitoring Technical Guide Detection rates of inexperienced observers in this study were initially lower than those of experienced observers but rapidly improved to roughly the same levels by early July following visits to numerous occupied goshawk territories. Detection rates of inexperienced observers in this study were initially lower than those of experienced observers but rapidly improved to roughly the same levels by early July following visits to numerous occupied goshawk territories. Personnel Qualifications and Training Standardized training materials should be developed and provided to field personnel planning to conduct goshawk surveys. Training materials should include identification of vocalizations of goshawks and sound-alikes, identification of goshawks and other forest raptors, identification of molted feathers of forest raptors, and a detailed description of survey protocol implementation. Voices of Western Forest Raptors and Sound-Alikes and Feathers of Western Forest Raptors and Look-Alikes are two products distributed with this technical guide for the purposes of training and field survey use. Training sessions should be conducted in association with goshawk study sites where trainees can observe breeding goshawks. Survey crews should consist of two people with one person assigned as crew leader. The survey crew leader should have field experience with goshawks and knowledge of goshawk vocalizations, signs, and behavior, and the ability to train inexperienced partners. At the completion of each survey visit, data entry forms and maps should be assembled and reviewed for inconsistencies or incomplete data by the survey crew leader. Northern Goshawk Inventory and Monitoring Technical Guide 3.5.1 Presence Simple determination of whether goshawks are present or absent in a given area may be adequate for broad-scale monitoring (i.e., the Bioregional Monitoring Design) in which information on nest site location or reproductive status are not required. Presence is one criterion used to establish territory occupancy, but presence can also represent subadult or nonterritorial goshawks (“floaters”). The following types of evidence are used to determine presence: The following types of evidence are used to determine presence: • Goshawks seen or heard in the survey area. • Presence of goshawk molts (feathers) in the survey area. 3.5 Data Analysis and Interpretation of Survey Results Survey results (detections of goshawks and their signs) must be evaluated with specific criteria for determining the status of a territory or survey area. Even 3-19 with clearly defined criteria, some ambiguity will always be present in status determinations because of the high mobility and secretive nature of nesting goshawks. Positive data such as vocal responses and molted feathers are easily interpreted, whereas negative or scant data are difficult to prove. Status determinations are strongly influenced by the intensity and areal extent of survey efforts. Conducting a brief Intensive Search Survey may be adequate to determine lack of goshawk presence within a 50-acre nest stand; however, this determination cannot be extrapolated to an entire territory or watershed. Status determinations are also influenced by the objectives of the survey. For project surveys, lack of detections may mean that goshawks do not inhabit the project area or that the surveys were conducted within a goshawk home range but not within the defended core area. It is important to establish a priori whether surveys are for simple presence or for occupied nest sites within some prescribed area. The following categories of area or territory status are used to describe outcomes of goshawk surveys and should be used in effects determination under the National Environmental Policy Act (NEPA). 3.5.2 Occupancy Occupancy is defined by the presence of territorial adult goshawks within a nesting area, regardless of reproductive status. Types of evidence used to determine occupancy are similar to those used for presence/absence, except that more evidence of consistent use is required to determine territorial occupancy. For demographic studies, Reynolds and Joy (2006) defined an occupied territory as (1) a territory in which goshawks were observed on two or more occasions or (2) a single observation of an adult goshawk combined with the presence of molted feathers, feces, and new nest construction in a season. These criteria are applied annually to survey results obtained at goshawk territories with a previous history of occupancy. In areas without a previous history of goshawk occupancy, however, determination of occupancy 3-20 Northern Goshawk Inventory and Monitoring Technical Guide should include evidence that goshawks detected are in fact within a territory and did not originate outside of the survey area. should include evidence that goshawks detected are in fact within a territory and did not originate outside of the survey area. should include evidence that goshawks detected are in fact within a territory and did not originate outside of the survey area. should include evidence that goshawks detected are in fact within a territory and did not originate outside of the survey area. The following types of evidence indicate occupancy: • Goshawks exhibiting defensive behavior in the survey area. • Goshawks seen or heard in the survey area. • Presence of goshawk molts in the survey area. • New construction (greenery) and/or down on nest structure. • Goshawk feces in the survey area. • Presence of prey remains in the survey area. Determination of confirmed occupancy requires at least one of the following: • Detection of adult goshawks exhibiting defensive behavior (alarm calls, approaching observer while vocalizing). • Any combination of three of the six evidence types listed above in the survey area. • Combination of visual/auditory detection and molted feathers, visual/auditory detection and new nest construction, or molted feathers and new nest construction observed in the survey area. Determination of possible occupancy requires at least one of the following: • Location/observation of a visual/auditory detection, molted feathers, or new nest construction. • Combination of prey remains and feces in the survey area. Assignment of “nonoccupied” status to a survey area is problematic because of the intensive effort required to support this determination. 3.5.2 Occupancy If survey results are not compelling, it is preferable to categorize areas without detections as “surveyed with no detection.” To determine occupancy status more precisely, see section 3.3.1 Survey Methods for the level of effort and detection rates used for determining occupancy status for each method. Northern Goshawk Inventory and Monitoring Technical Guide 3.5.4 Successful Nest Active nests are considered successful if one or more fledglings survive to the branching or fledging stage (more than 34 days old). Active nests are considered successful if one or more fledglings survive to the branching or fledging stage (more than 34 days old). Active nests are considered successful if one or more fledglings survive to the branching or fledging stage (more than 34 days old). Direct evidence of fledged young includes the following: • Observation of one or more young goshawks judged to be at least 34 days old on nest or within the nest area. • Auditory detection of more than one goshawk giving begging calls near a nest with signs of recent fledging (copious feces on ground, down on nest) after the usual fledging date (early July to August). Indirect evidence of fledged young includes the following: Indirect evidence of fledged young includes the following: • Observation of an active nest with signs of recent fledging (copious feces on ground, down on nest, molted feathers, prey remains). • Observation of remains of predated fledglings (more than 34 days old based on length of primary or tail feathers) in the nest area. If nest checks are made while nestlings are younger than 34 days old, the nest may be classified as “active with young,” but nest success remains unknown. 3.5.3 Breeding Breeding status is indicated by a nest that has supported a reproductive attempt in the current breeding year. Nonreproducing goshawks may reconstruct or add greenery to one or more nests during the courtship period; therefore, a determination of breeding requires evidence of egg laying. Direct evidence of egg laying includes observation of the following: Direct evidence of egg laying includes observation of the following: • Eggs (during climb to nest, from upslope, or with a mirror). • Nestlings. • Fledglings in the nest tree or nest area. 3-21 Northern Goshawk Inventory and Monitoring Technical Guide Indirect evidence of egg laying includes the following: • Observation of adult female in incubation posture (sitting low on the nest, often barely visible) on 2 or more separate days. • Presence of eggshell fragments below nest or near nest tree (fragments may be from failed eggs as well as after hatching). • Presence of dime-sized nestling feces below the nest tree (typically found when nestlings are more than 4 days old). 3.5.5 Fledging Rate Accurate determination of the number of fledglings produced at goshawks nests is made difficult by the variability in fledging dates and behaviors of male and female fledglings. Male goshawks may leave the nest up to 10 days earlier than females, and fledglings may or may not return to the nest to roost and feed. Recently fledged goshawks are often lost to predation and are likely to be overlooked in fledgling counts. Simple counts of late-stage nestlings (28 to 34 days old) have the potential to miss early-fledging males or individuals laying down low in the nest cup, especially in larger broods. If productivity data are desired, it is preferable to use counts of large nestlings (24 to 30 days old) as a surrogate for actual number fledged. If counts are made from the ground (nest tree not climbed), they should be repeated at least once to increase 3-22 Northern Goshawk Inventory and Monitoring Technical Guide the probability of detecting all individuals. At nests with limited visibility, such counts are unlikely to consistently provide accurate information. 3.6 Survey Applications Goshawk survey protocols may be used individually or in combination to address a variety of objectives. It is often desirable to vary the intensity or areal extent of surveys to most efficiently achieve specific objectives, depending on the type of goshawk data required, timing of projects, budgetary constraints, and logistical considerations. The most common objectives of goshawk surveys are territory monitoring, small- area surveys for forest management projects, and large-area surveys for assessments or broad-scale management projects. The survey protocol applications provided below are designed to increase efficiency by maximizing detection rates and focusing survey effort. 3.6.1 Territory Monitoring Application This application is for monitoring territory occupancy, determining nest locations, and determining reproductive success and productivity. The application is a stepwise process, based on the use of three survey protocols that are described in detail in section 3.3.1. To maximize efficiency, the stepwise procedure uses intensive methods early in the season, on areas most likely to contain the active nest. If goshawks are not detected during the first survey steps, more extensive methods are employed to locate new, widely spaced alternate nests. The periodic relocation of nest sites is an important and often overlooked aspect of goshawk-breeding behavior. Monitoring efforts focused on one or two known alternate nests are unlikely to accurately determine occupancy and breeding status of entire territories, which often encompass alternate nests scattered over an 800-ha area. If budgetary or logistical constraints limit survey efforts to a smaller area, the status determination must be made at that scale and not extrapolated to the entire territory. Northern Goshawk Inventory and Monitoring Technical Guide Level 1 Survey (option 1) Conduct the Dawn Acoustical Survey protocol at points within 200 m of known nest sites, starting with the last known nest. • If goshawks are detected, status = occupied. • If goshawks are detected, status = occupied. • Conduct the Intensive Search Survey around the detection area during the incubation or nestling stage to determine the breeding status. • If goshawks are not detected, go to the Level 2 Survey. Level 2 Survey Conduct the Intensive Search Survey protocol of all forest habitats within 500 m of last known nest. Conduct the Intensive Search Survey protocol of all forest habitats within 500 m of last known nest. • If an active goshawk nest is found, status = breeding. Stop. • If goshawks or signs are found but an active nest is NOT found, status = occupied. Repeat the survey in the area of detection in 2 weeks. If goshawks or signs are NOT found, go to the Level 3 Survey. Protocol Preparation. Using recent aerial photographs or digital orthophotoquad maps, superimpose a grid (100x100 m cell size) over the “territory area”; a 0.6-km radius surrounding the last known nest or geometric center of all known alternate nests in a territory. In particular, this map should display roads, streams, drainages, and openings that will be helpful for locating plotted nests, areas to be searched, and broadcasting stations in the field. 3-23 Northern Goshawk Inventory and Monitoring Technical Guide Level 1 Survey (option 2) Conduct the Intensive Search Survey protocol of all forested areas within a 100-m radius of all known nests with known territories. Start with the last known nest. The survey should be conducted after hatching through 3 weeks of postfledging or about late May through mid-August. Surveys may be conducted earlier (during incubation) but will likely be less effective due to lack of signs and lack of defensive behavior by incubating females. • If an active goshawk nest is found (with an incubating hawk or nestlings), status = breeding. Stop. • If goshawks or signs (minimum criteria for signs are molted feathers associated with multiple patches of whitewash and/or a nest showing signs of recent reconstruction) are found, but an active nest is NOT found, status = occupied. To locate an active nest, go to the Level 2 Survey. • If the initial Intensive Search Survey protocol was conducted during the incubation period (late April to mid-May), observers may repeat the Level 1 Survey in 2 to 3 weeks instead of conducting the Level 2 Survey. • If the initial Intensive Search Survey protocol was conducted during the incubation period (late April to mid-May), observers may repeat the Level 1 Survey in 2 to 3 weeks instead of conducting the Level 2 Survey. • If goshawks or signs are NOT found, go to the Level 2 Survey. Rationale Effort-intensive methods such as Dawn Acoustical Surveys and Intensive Search Surveys have higher detection rates and may be conducted earlier in the breeding season than Broadcast Acoustical Surveys. Early-season surveys are critical for detecting breeding attempts that fail during incubation and before Broadcast Acoustical Surveys are typically implemented. If early failures are undetected, territories will incorrectly be classified as nonbreeding. If intensive methods focused in known nest cores and high-priority habitat fail to detect goshawks or signs, more extensive methods must be employed to locate alternate nests, which may be up to 2 km from known nest sites. Without these extensive Broadcast Acoustical Surveys, determination of status cannot be made for the entire territory. The status determinations made within this stepwise approach are not absolute; they have an associated confidence estimate based on field data. Long- term monitoring data from the Kaibab Plateau (Reynolds et al. 2005) indicate that searching a 0.5 km radius around known nests will capture about 75 percent of the alternate nests within a territory. A radius of 1 km yields around a 95 percent likelihood of capturing all alternate nests within a territory. Level 3 Survey Conduct the Broadcast Acoustical Survey protocol (two visits) within a 1,600-m (1-mile) radius of the last known nest. Delete from the Level 3 Survey those areas previously searched in the Level 1 & 2 Surveys. This technique is most effective after the eggs hatch, typically after late May or early June, depending on the location. 3-24 Northern Goshawk Inventory and Monitoring Technical Guide • If an active goshawk nest is found, status = breeding. Stop. • If an active goshawk nest is found, status = breeding. Stop. • If goshawks or signs are found but an active nest is NOT found, status = occupied nonbreeding. Stop. • If goshawks or signs are found but an active nest is NOT found, status = occupied nonbreeding. Stop. • If goshawks or signs are NOT found, status = unoccupied. Stop. Northern Goshawk Inventory and Monitoring Technical Guide 3.6.2 Small Area Survey Application Many land management activities occur at scales considerably smaller than goshawk territories or home ranges. The analysis of environmental effects for such projects may require knowledge of goshawk nest site locations only within a limited area (4 to 160 ha). Project surveys typically are employed to address two information needs: location of territory “cores” for long-term habitat management and location of currently active nests for mitigation or avoidance of disturbance. Habitat management. For projects that involve removal or adverse modification of goshawk nesting habitat, managers are interested in knowing whether the project area con- tains goshawk nest sites, regardless of whether they are active during the year of project implementation. Survey methods used in this case must be capable of detecting nonbreed- ing goshawks or signs and unused nests. Mitigation of disturbance. For projects that do not involve significant modification of goshawk habitat, impacts to goshawks may still occur in the form of disturbance of nesting goshawks. For such projects, managers are often interested in knowing whether 3-25 Northern Goshawk Inventory and Monitoring Technical Guide goshawks are actually nesting during the year of project implementation, so that seasonal restrictions may be applied to mitigate disturbance. Survey methods used in this case are geared toward efficiently locating currently active nests as early in the breeding season as possible. For either survey objective, Dawn Acoustical Surveys provide a very high probability of detecting goshawks regardless of breeding status. If access to the survey area is feasible during early spring and the patches of suitable habitat to be surveyed are relatively small, Dawn Acoustical Surveys are the preferred method for early detection of occupancy by goshawks. Detections with this method are usually obtained in March and April, and a brief search of the detection area during the late incubation or (preferably) nestling stage is required to determine the location of an active nest. If early spring access is not feasible, Intensive Search Surveys should be used during the nestling and/or fledgling stages. Compared with Broadcast Acoustical Surveys, single-visit detection probabilities are higher for this method (table 3.2), as is the likelihood of locating goshawk signs, unused nests, or other indications of a territory core. 3.6.3 Large Area Survey Application Broad scale surveys for goshawks may be required for watershed analyses, Broad scale surveys for goshawks may be required for watershed analyses, population research projects, or analyses of environmental effects for extensive forest management projects. In most cases, information is available to enable managers to focus intensive surveys early in areas most likely to be occupied by goshawks, reducing the need for more extensive methods later in the breeding season. This application provides a step-down survey plan to reduce the area requiring physical surveys and maximize efficiency in surveying specific habitats. Use data from known goshawk territories in the area (same bioregion, forest type) to create a descriptive model of suitable (likely to be occupied) habitat versus low-quality habitat. Model parameters should include forest structure (species composition, size class, density), as well as patch size, topographic features (slope, aspect), and hydrologic features (meadows, riparian habitats) that are often associated with goshawk nest areas. In a Geographic Information System, use this model to classify a vegetation data layer into high-priority survey areas (suitable nesting habitat) and low-priority survey areas. Plot the locations of previously known goshawk territory centers (or last known nests) onto the habitat map and create a buffer of 1600-m radius around each point. The area requiring surveys can be reduced by deleting these buffers from the survey area. This radius is likely to contain the current nest site and is unlikely to contain an additional territory. 3-26 Northern Goshawk Inventory and Monitoring Technical Guide After removing known territory buffers from the survey area, develop a step- down survey plan for the remaining area. The selection of survey protocols and the timing of survey efforts should be based on the amount, distribution, and patch size of suitable nesting habitat and feasibility of early spring access. Step 1. If access into the survey area is feasible in early spring, use Dawn Acousti- cal Surveys in patches of high-priority habitat, patches with past goshawk sightings, and historic nest areas. Focusing on these areas enables early deletion of newly discovered occupied areas from the survey area and allows early inclusion of goshawk management into project planning. If Dawn Acoustical Surveys are not feasible, use Intensive Search Surveys as early as possible in high-priority patches. Step 2. Conduct Intensive Search Surveys in all high-priority habitat patches during the nestling stage (May to June). 3.6.3 Large Area Survey Application Start with habitat patches located 2.5 to 5 km from currently known territory centers. If detections are not obtained in areas of high- priority habitat, repeat the Intensive Search Survey in at least 2 weeks or move to the Broadcast Acoustical Survey in step 3. Step 3. If large areas of suitable habitat remain to be surveyed, establish transects for Broadcast Acoustical Surveys to cover the entire area. Surveys should be conducted twice, once during the nestling stage and again during the fledgling stage. Northern Goshawk Inventory and Monitoring Technical Guide 3.7 Reporting When reporting results of goshawk surveys and determination of territory or survey area status, it is important to describe the protocol or application employed, extent and intensity of survey efforts, and the criteria used to determine status. These descriptions are particularly important when decisions are based on negative survey results. These data should be considered as support for project design standards and for determinations of environmental effects. This information is frequently lacking in project files or, subsequently, the administrative record for projects that are assessed for NEPA or National Forest Management Act compliance. Estimates of confidence in status determinations may be derived from detection rate information in table 3.2. For example, a timber sale unit receiving a single Broadcast Acoustical Survey visit (to protocol) would have a 64 percent probability of being correctly classified if occupied by goshawks. 3-27 Northern Goshawk Inventory and Monitoring Technical Guide Northern Goshawk Inventory and Monitoring Technical Guide 3-28 Appendix A. Literature Cited Akaike, H. 1973. Information theory as an extension of the maximum likelihood principle. In: Petrov, B.N.; Csaki, F., eds. Second international symposium on information theory. Budapest, Hungary: Akademiai Kidao: 267-281. Akaike, H. 1974. A new look at the statistical model identification. IEEE Transactions on Automatic Control. 19: 716-723. American Ornithologists’ Union. 1957. Check-list of North American birds. 5th ed. American Ornithologists’ Union. 1957. Check-list of North American birds. 5th ed. American Ornithologists’ Union. Baltimore, MD: Lord Baltimore Press. 691 p. American Ornithologists’ Union. Baltimore, MD: Lord Baltimore Press. 691 p. Babbitt, C.; Galvin, P.; Hitt, S.M.; Hoffman, S.W.; MacFarlane, A.; Rait, K.; Sandell, C.I.; Sauber, M.; Schulke, T.; Wardwell, G. 1991. Letter to the Department of Interior requesting to amend a petition to list the northern goshawk. Phoenix, AZ: Maricopa Audubon Society. 5 p. Bailey, R.G. 1980. Description of the ecoregions of the United States. U.S. Bailey, R.G. 1980. Description of the ecoregions of the United States. U.S. Department of Agriculture Misc. Pub. 1391. Washington, DC: U.S. Department of Agriculture. 77 p. Department of Agriculture Misc. Pub. 1391. Washington, DC: U.S. Department of Agriculture. 77 p. Baldwin, J. 2004 (May 7). Personal communication. Research statistician. U.S. Department of Agriculture, Forest Service, Pacific Southwest Research Station, Albany, CA. Boal, C.W. 1994. A photographic and behavioral guide to aging nestling northern goshawks. Studies in Avian Biology. 16: 32-40. Burnham, K.P.; Anderson, D.R. 2002. Model selection and multimodel inference: a practical information-theoretic approach. 2nd ed. New York: Springer-Verlag. 488 p. DeStefano, S.S.; Daw, S.K.; Desimone, S.M.; Meslow, E.C. 1994. Density and productivity of northern goshawks: implications for monitoring and management. Studies in Avian Biology. 16: 88-91. Dewey, S.R.; Kennedy, P.L.; Stephens, R.M. 2003. Are dawn vocalization surveys effective for monitoring goshawk nest-area occupancy? Journal of Wildlife Management. 67: 390-397. Ferland, C.F.; Forsman, E.D.; Hargis, C.D. 2006. The northern goshawk bioregional monitoring design: What will it cost? Wildlife Society Bulletin. 34: 215-217. A-1 A-1 Northern Goshawk Inventory and Monitoring Technical Guide Northern Goshawk Inventory and Monitoring Technical Guide Fretwell, S.D. 1972. Populations in a seasonal environment. Princeton, NJ: Princeton University Press. 217 p. Fretwell, S.D. 1972. Populations in a seasonal environment. Princeton, NJ: Princeton University Press. 217 p. Fuller, M.A.; Mosher, J.A. 1987. Raptor survey techniques. In: Giron Pendleton, Fuller, M.A.; Mosher, J.A. 1987. Raptor survey techniques. In: Giron Pendleton, B.A.; Millsap, B.A.; Cline, K.W.; Bird, D.M., eds. Raptor management techniques manual. Appendix A. Literature Cited National Wildlife Federation Scientific and Technical Series 10. Washington, DC: National Wildlife Federation: 37-65. Geissler, P.H.; Fuller, M.R. 1987. Estimation of the proportion of an area occupied by an animal species. In: Proceedings of the section on survey research methods of the American Statistical Association. Alexandria, VA: American Statistical Association: 533-538. Hargis, C.D.; Woodbridge, B. 2006. A design for monitoring northern goshawks (Accipiter gentilis) at the bioregional scale. Studies in Avian Biology. 31: 275-288. Hayward, G.D.; Escano, R.E. 1989. Goshawk nest-site characteristics in western Montana and northern Idaho. Condor. 91: 476-479. Henny, C.J.; Olson, R.A.; Fleming, T.L. 1985. Breeding chronology, molt, and measurements of accipiter hawks in northeastern Oregon. Journal of Field Ornithology. 56: 97-112. Herron, G.B.; Mortimore, C.A.; Rawlings, M.S. 1985. Northern goshawk. Nevada raptors: their biology and management. Biology Bulletin No. 8. Reno, NV: Nevada Department of Wildlife. 114 p. Joy, S.M.; Reich, R.M.; Thomas, V.L. 2003. Northern goshawk inventory and monitoring: developing sampling strata for the Colorado-Wyoming bioregion. Final report. Fort Collins, CO: Geoquanta. 30 p. Joy, S.M.; Reynolds, R.T.; Leslie, D.G. 1994. Northern goshawk broadcast surveys: hawk response variables and survey cost. Studies in Avian Biology. 16: 24-30. Keane, J.; Woodbridge, B. 2002. Unpublished data. On file with: USDA Forest Service, Sierra Nevada Research Center, 2121 Second Street, Suite A101, Davis, CA. Keane, J.J. 1999. Ecology of the northern goshawk in the Sierra Nevada, California. Davis, CA: University of California. 134 p. Ph.D. dissertation. Kennedy, P.L.; Stahlecker, D.W. 1993. Responsiveness of nesting northern goshawks to taped broadcasts of 3 conspecific calls. Journal of Wildlife Management. 57: 249- 257. A-2 Northern Goshawk Inventory and Monitoring Technical Guide Kennedy, P.L.; Ward, J.M.; Rinker, G.A.; Gessaman, J.A. 1994. Post-fledging areas in northern goshawk home ranges. Studies in Avian Biology. 16: 75-82. Kimmel, J.T.; Yahner, R.H. 1990. Response of northern goshawks to taped conspecific and great horned owl calls. J. Raptor Research. 23: 107-112. Krebs, C.J. 1989. Ecological methodology. New York: Harper and Row. 654 p. Levy, P.S.; Lemeshow, S. 1999. Sampling of populations: methods and applications. 3rd ed. New York: John Wiley & Sons. 420 p. MacKenzie, D.I.; Nichols, J.D.; Lachman, G.B.; et al. 2002. Estimating site occupancy rates when detection probabilities are less than one. Ecology. 83: 2248-2255. McNab, W.H.; Avers, P.E. 1994. Ecological subregions of the United States: section descriptions. USDA Forest Service Administrative Publication WO-WSA-5. Washington, DC: U.S. Department of Agriculture, Forest Service. 267 p. Appendix A. Literature Cited O’Brien, R.G. 1998. A tour of UnifyPow: a SAS module/macro for sample size analysis. In: SAS Institute, ed. Proceedings of the 23rd SAS Users Group International Conference. Cary, NC: SAS Institute: 1346-1355. Penteriani, V. 1999. Dawn and morning goshawk courtship vocalizations as a method for detecting nest sites. Journal of Wildlife Management. 63: 511-516. Reynolds, R.T. 1982. North American accipiter hawks. In: Davis, D.E., ed. Handbook of census methods for terrestrial vertebrates. Boca Raton, FL: CRC Press: 288-289. Reynolds, R.T. 2002 (April 10–12). Personal communication. Research wildlife biologist. Fort Collins, CO: U.S. Department of Agriculture, Forest Service, Rocky Mountain Research Station. Reynolds, R.T.; Joy, S.M. 1998. Distribution, territory occupancy, dispersal, and demography of northern goshawks on the Kaibab Plateau, Arizona. Final Report for Arizona Game and Fish, Heritage Project No. 194045. Forest Collins, CO: U.S. Department of Agriculture, Forest Service, Rocky Mountain Research Station. 76 p. Reynolds, R.T.; Joy, S.M. 2006. Demography of northern goshawks in northern Arizona, 1991–1996. Studies in Avian Biology. 31: 63-75. Reynolds, R.T.; Wiens, J.D.; Joy, S.M.; Salafsky, S.R. 2005. Sampling considerations for demographic and habitat studies of northern goshawks. Journal of Raptor Research. 39: 274-285. A-3 Northern Goshawk Inventory and Monitoring Technical Guide Northern Goshawk Inventory and Monitoring Technical Guide Ricklefs, R.E. 1979. Ecology. 2nd ed. New York: Chiron Press. 966 p. Robbins, C.S.; Bystrak, D.; Geissler, P.H. 1986. The Breeding Bird Survey: its first fifteen years, 1965–1979. U.S. Fish & Wildlife Service Resources Publication 157. Washington, DC: U.S. Fish & Wildlife Service. 196 p. Rodriguez, R.L. 2004 (October 17). Personal communication. Forest biologist. U.S. Department of Agriculture, Forest Service, Dixie National Forest, Cedar City, UT. Sauer, J.R.; Hines, J.E.; Fallon, J. 2001. The North American Breeding Bird Survey, results and analysis 1966–2000. Version 2001.2. Laurel, MD: USGS Patuxent Wildlife Research Center. http://www.mbr-pwrc.usgs.gov/bbs/bbs.html. [Date accessed unknown]. Silver, R.D.; Galvin, P.; Hirsch, S.; Hitt, S.M.; Hoffman, S.W.; MacFarlane, A.; Sandell, C.I.; Sauber, M.; Schulke, T.; Wardwell, G.; Wotkyns, S. 1991. Letter to the Department of Interior petitioning to list the northern goshawk (Accipiter gentilis) in Utah, Colorado, New Mexico, and Arizona under the Endangered Species Act. Phoenix, AZ: Maricopa Audubon Society. 61 p. Squires, J.R.; Reynolds, R.T. 1997. Northern goshawk (Accipiter gentilis). In: Poole, A.; Gill, F., eds. The birds of North America, No. 298. Philadelphia, PA: Academy of Natural Sciences; Washington, DC: American Ornithologists’ Union. 32 p. Urquhart, N.S.; Kincaid, T.M. 1999. Appendix A. Literature Cited Trend detection in repeated surveys of ecological responses. Journal of Agricultural, Biological and Environmental Statistics. 4: 404-414. U.S. Department of Agriculture (USDA), Forest Service. 1991. Planning for management and recovery. FSM 2672 Amend. 2600-91-4. Washington, DC: U.S. Department of Agriculture, Forest Service. USDA Forest Service. 1995. Threatened, endangered and sensitive plants and animals. FSM 2670 Amend. 2600-95-7. Washington, DC: U.S. Department of Agriculture, Forest Service. USDA Forest Service. 2000. Survey methodology for northern goshawks in the Pacific Southwest Region. Vallejo, CA: U.S. Department of Agriculture, Forest Service, Pacific Southwest Region. 148 p. U.S. Department of Labor, Occupational Safety and Health Administration. 1974. 29 CFR Part 1910: Occupational safety and health standards. Subpart G. Occupational health and environmental control. Federal Register 39: 23,502. A-4 Northern Goshawk Inventory and Monitoring Technical Guide U.S. Fish & Wildlife Service (USFWS). 1996. 50 CFR Part 17: Endangered and threatened wildlife and plants; 90-day finding for a petition to list the northern goshawk in the Western United States. Federal Register 61 (110): 28,834-28,835. USFWS. 1997. 50 CFR Part 17: Endangered and threatened wildlife and plants; 12- month finding for a petition to list the Queen Charlotte goshawk as endangered and to designate critical habitat. Federal Register 62 (171): 46,710-46,712. USFWS. 1998a. 50 CFR Part 17: Endangered and threatened wildlife and plants; notice of 12-month finding on a petition to list the northern goshawk in the contiguous United States west of the 100th meridian. Federal Register 63 (124): 35,183-35,184. USFWS. 1998b. Status review of the northern goshawk in the forested West. Office of Technical Support-Forest Resources. Unpublished report. Portland, OR: U.S. Fish & Wildlife Service. 250 p. Verner, J. 1985. Assessment of counting techniques. Current Ornithology. 2: 247-302. Verner, J.; Milne, K. 1989. Coping with sources of variability when monitoring population trends. Annales Zoologici Fennici. 26: 191-199. Watson, J.W.; Hays, D.W.; Pierce, D.J. 1999. Efficacy of northern goshawk broadcast surveys in Washington State. Journal of Wildlife Management. 63: 98-106. Whaley, W.H.; White, C.M. 1994. Trends in geographic variation of Cooper’s hawk and northern goshawk in North America: a multivariate analysis. Proceedings of the Western Foundation of Vertebrate Zoology. 5: 161-209. Woodbridge, B. 1998. Unpublished data. On file with: U.S. Fish & Wildlife Service, Yreka Fish & Wildlife Office, 1829 S. Oregon Street, Yreka, CA. Woodbridge, B.; Detrich, P.J. 1994. Territory occupancy and habitat patch size of northern goshawks in the southern Cascades of California. Northern Goshawk Inventory and Monitoring Technical Guide Appendix A. Literature Cited Studies in Avian Biology. 16: 83-87. Younk, J.V.; Bechard, M.J. 1994. Breeding ecology of the northern goshawk in high- elevation aspen forests of northern Nevada. Studies in Avian Biology. 16: 119-121. A-5 A-5 Northern Goshawk Inventory and Monitoring Technical Guide Northern Goshawk Inventory and Monitoring Technical Guide A-6 Appendix B. Interactive Spreadsheet for Determining Bioregional Sample Size Stratum Habitat Accesss Number of PSUs in Stra- tum Pro- por- tion of PSUs with Pres- ence Average Cost per PSU Vist Expected Number of Visits per PSU 1st Visit Detec- tion Prob- ability 2nd De- tection Prob- ability Propor- tion of sites with 2nd Visit after Presence in 1st Visit Asymptotic Variance of a Single PSU Optimal Sample Size Arbitrary Sample Size Total Arbitrary Sample Size 1 Primary Easy 942 0.9 $652.00 1.88 0.65 0.65 0.8 0.373779586 30 57 79 2 Primary Difficult 211 0.9 $692.00 1.88 0.65 0.65 0.8 0.373779586 7 2 3 Marginal Easy 2,053 0.05 $652.00 1.99 0.65 0.65 0.8 0.063265533 26 13 4 Marginal Difficult 1,239 0.05 $692.00 1.99 0.65 0.65 0.8 0.063265533 15 7 4,445 0.2705 $100,000.00 $100,439.07 0.038656257 78 0.049230421 $99,139.30 N Mean Propor- tion Total Cost Actual Cost Overall Standard Error Total Sample Size Arbitrary Standard Error Arbitrary Total Cost a Version 1.1. 2005 October 20. Written by Jim Baldwin. Pacific Southwest Research Station USDA Forest Service. An interactive version is on the CD. b Calculation of Optimal Sample Size. You can fill in any of the shaded areas. All other areas are protected and change depending on your input to the shaded cells. c Disclaimer. Every effort is made to provide accurate and useful information. However, the U.S. Government, U.S. Department of Agriculture, the USDA Forest Service and their employees and contractors assume no legal liability for the accuracy, completeness, or usefulness of any information, apparatus, product, or process disclosed herein. Neither the U.S. Government, U.S. Department of Agriculture, the USDA Forest Service, nor their employees and contractors makes any warranty, express or implied, including the warranties of merchantability and fitness for a particular purpose with respect to documents or information available from this server. All indirect, consequential, implied, punitive and special damages are deemed waived if you use the information in this workbook in any manner. The sole remedy is the price paid or, at the seller’s choice, replacement or repair of the defective information. Northern Goshawk Inventory and Monitoring Technical Guide Northern Goshawk Inventory and Monitoring Technical Guide Northern Goshawk Inventory and Monitoring Technical Guide Appendix A. Literature Cited B-1 Northern Goshawk Inventory and Monitoring Technical Guide B-1 B-2 Appendix C. Sample PSU Map Photo credit: Janice Wilson and Hui Wang. Photo credit: Janice Wilson and Hui Wang. Photo credit: Janice Wilson and Hui Wang. C-1 C-1 Northern Goshawk Inventory and Monitoring Technical Guide C-2 Appendix D. Guidelines for Constructing Field Data Collection Forms Data collected during field surveys can be recorded and stored in a variety of ways, including paper data forms, audio recording devices, and electronic data recorders. The advantages and disadvantages of each method vary in accordance with the field conditions, technical capabilities, and personal preferences of survey teams. For these reasons we do not propose a single, standardized data collection form for either the Bioregional Monitoring Design or any other survey effort. Rather, this appendix provides guidelines for creating a data collection form by recommending the elements that should be included and providing standard codes for certain data types. Three general categories of information are collected during goshawk surveys: general information about the survey, spatial data describing the exact location of survey points and goshawk detections, and response data describing the nature of goshawk detections. Generalized forms of these data are entered into National Resource Information System (NRIS) Fauna, but information that is specific to goshawk management or monitoring must be collected in the field. In the future, a goshawk tool might be available in NRIS Fauna, but currently the specific goshawk information must be stored elsewhere. This appendix describes the specific information that should be collected in the field. 1. General Survey Information This information serves to describe the type of survey and conditions encountered during the survey. At minimum, these fields should include the survey date, survey objective, survey type, start and stop times, weather conditions, and names and experience categories of the observers conducting the survey. The visit number (first, second, third visit) should be clearly denoted on the form (table D.1). Northern Goshawk Inventory and Monitoring Technical Guide 2. Spatial Information Each survey area should be given an identifying number and “address” consisting of geospatial coordinates, and every survey form or data input screen must contain a field for this identifying number. For bioregional monitoring programs, each primary sampling unit (PSU) will have an identifying number. For project-level surveys, the survey points may be established first and then buffered in a Geographic Information System (GIS) to create a survey polygon. The location accuracy must be specified. Survey points should be mapped, individually numbered, and recorded in NRIS Fauna or a similar spatial database. Data collection forms should contain fields (usually in tabular form) enabling observers to record observations relating to each survey point and to the routes between points. D-1 Northern Goshawk Inventory and Monitoring Technical Guide D-1 A map depicting the PSU or survey area boundaries and locations of numbered survey points should be associated with each survey. These maps may be easily created in a GIS environment, incorporating features such as topography, vegetation, and roads that facilitate orientation of observers in the field and accurate plotting of goshawk detections. Observations of goshawks distant from survey points should be marked on the map and keyed to entries in the data form. 3. Response Data Detections made during the survey should be clearly described and linked to their spatial location. The start and stop time at each survey station (regardless of result) and the time of any goshawk detection should be recorded. The type of response (visual, auditory) and description of response (age, sex, behavior, and location of goshawks) must be recorded; this recording may be accomplished using a system of codes (table D.2) or in narrative form. Observations of goshawk signs (molted feathers, whitewash, prey remains, old nests) may be recorded in the same fields. Northern Goshawk Inventory and Monitoring Technical Guide Table D.1. General survey information codes and instructions for field survey form. General survey information Site/PSU PSU number or survey area name/number Date Month/day/year Visit number First, second, or third survey visit in a given year Survey method Broadcast Acoustical, Intensive Search, or Dawn Acoustical Team Names of individuals conducting survey Wind code 1 = smoke rises (<1 mph); 2 = smoke drifts due to breeze (1–3 mph); 3 = leaves rustle, breeze felt on face (4–7 mph); 4 = leaves and small twigs in constant motion (8–12 mph); 5 = raises dust, small branches in motion (>12 mph) Cloud cover code Estimated cloud cover at midpoint of survey: 1 = <5%; 2 = 5–20%; 3 = 21–40%; 4 = 41–60%; 5 = 61–80%; 6 = 81–100% Temperature Estimated temperature at beginning and end of survey Survey time Time of start and end of survey in military time Intensive nest If a detection triggers a nest search, record the start and end time search time of the search Post-survey review Data sheet complete Immediately following survey, double check data sheet for completeness and legibility—Y/N; make corrections Map of PSU/survey Y = yes; after stapling map of PSU or survey area showing area attached? locations of detections to the data sheet Detections mapped? Y = yes; after marking all locations on PSU/survey area map and crosschecking numbers on data sheet Northern Goshawk Inventory and Monitoring Technical Guide Table D.1. General survey information codes and instructions for field survey form. Northern Goshawk Inventory and Monitoring Technical Guide 3. Response Data General survey information Site/PSU PSU number or survey area name/number Date Month/day/year Visit number First, second, or third survey visit in a given year Survey method Broadcast Acoustical, Intensive Search, or Dawn Acoustical Team Names of individuals conducting survey Wind code 1 = smoke rises (<1 mph); 2 = smoke drifts due to breeze (1–3 mph); 3 = leaves rustle, breeze felt on face (4–7 mph); 4 = leaves and small twigs in constant motion (8–12 mph); 5 = raises dust, small branches in motion (>12 mph) Cloud cover code Estimated cloud cover at midpoint of survey: 1 = <5%; 2 = 5–20%; 3 = 21–40%; 4 = 41–60%; 5 = 61–80%; 6 = 81–100% Temperature Estimated temperature at beginning and end of survey Survey time Time of start and end of survey in military time Intensive nest If a detection triggers a nest search, record the start and end time search time of the search Post-survey review Data sheet complete Immediately following survey, double check data sheet for completeness and legibility—Y/N; make corrections Map of PSU/survey Y = yes; after stapling map of PSU or survey area showing area attached? locations of detections to the data sheet Detections mapped? Y = yes; after marking all locations on PSU/survey area map and crosschecking numbers on data sheet D-2 Table D.2. Sample codes for recording response data in field survey form. Code Code description Point Survey point number ID# Unique number given to each detection Marked ID# marked on map? Yes/No Description of detection SWW Single patch of whitewash MWW Multiple patches of whitewash SPR Single prey remains (single prey item) MPR Multiple prey remains (as in plucking post) SMF Single molted feather from goshawk MMF Multiple molted feathers from goshawk SGOS Silent visual detection of goshawk VGOS Vocal detection of goshawk BGOS Both vocal and visual detection of goshawk OSN Inactive stick nest—goshawk characteristics ANY Active goshawk nest with young ANF Active nest with young already fledged Age of bird(s) detected A Adult J Juvenile N Nestling U Age unknown Location of detections DIST Estimate or pace distance to initial detection D-LOC Location of detection CP Detection occurred at call station TL Detection occurred along transect ICB Compass bearing to initial detection of goshawk LCB Compass bearing of direction of travel of departing goshawk Northern Goshawk Inventory and Monitoring Technical Guide D-3 D-4
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Preparation of Porous Liquid Based on Silicalite-1
Materials
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Yutong Liu 1, 2, Yang Bai 1 and Tao Tian 1,* 1 Key Laboratory of Groundwater Resources and Environment, Ministry of Education, College of Environment and Resource, Jilin University, Changchun 130012, China; tiantao@jlu.edu.cn 2 Jilin Engineering Normal University; liuyt841011@163.com 1 Key Laboratory of Groundwater Resources and Environment, Ministry of Education, College of Environment and Resource, Jilin University, Changchun 130012, China; tiantao@jlu.edu.cn 2 Jilin Engineering Normal University; liuyt841011@163.com * Correspondence: tiantao@jlu.edu.cn Abstract: Solid porous materials, like zeolites, have been widely used in a variety of fields such as size and shape-selective absorption/separation and catalysis because of their porosity. But there are few liquid materials exhibit permanent porosity. Porous liquids are a novel material that combine the properties of fluidity and permanent porosity. It has potential applications in many fields such as gas separation, storage and transport. Herein, we report a novel Type 1 porous liquid prepared based on Silicalite-1. The pore size of this porous liquid was determined by positron annihilation lifetime spectroscopy (PALS), and the CO2 capacities was determined by the intelligent gravimetric analyser (IGA). The unique properties of this porous liquid can promote its application in many fields such as gas storage and transport. Keywords: porous liquid; Silicalite-1; CO2 capacities; gas storage Preprints (www.preprints.org) | NOT PEER-REVIEWED | Posted: 15 November 2019 Preprints (www.preprints.org) | NOT PEER-REVIEWED | Posted: 15 November 2019 doi:10.20944/preprints201911.0181.v1 Communication 2.1. Synthesis of nanosized Silicalite-1 Nanosized S-1 zeolite has been synthesized under direct hydrothermal conditions [20]. The initial solutions were prepared by mixing tetraethyl orthosilicate (98%, Aldrich) and tetrapropylammonium hydroxide (1 M aqueous solution, Aldrich). The chemical composition is 9 TPAOH: 25 SiO2: 480 H2O. The silica alkoxides were hydrolyzed under slow stirring (50 rpm) for 24 h at room temperature. The obtained clear solutions were transferred in polypropylene bottles and subjected to hydrothermal treatment in a conventional oven. The syntheses were performed at 90 °C for 96 h. After the treatment, the zeolite suspensions were purified in a series of four steps consisting of high-speed centrifugation (10000 rpm, 20min), removal of the mother liquor, and washed by water for several times. After that, the sample was dried at 80 ℃ in the oven overnight and calcined at 600 ℃ for 6 h to remove organic impurity. 1. Introduction Preprints (www.preprints.org) | NOT PEER-REVIEWED | Posted: 15 November 2019 doi:10.20944/preprints201911.0181 Peer-reviewed version available at Materials 2019, 12, 3984; doi:10.3390/ma12233984 doi:10.20944/preprints201911.0181.v1 (TEM). The positron annihilation lifetime spectroscopy (PALS) and CO2 capacities determined by the intelligent gravimetric analyser (IGA) were used to demonstrate its porosity. (TEM). The positron annihilation lifetime spectroscopy (PALS) and CO2 capacities determined by the intelligent gravimetric analyser (IGA) were used to demonstrate its porosity. 2. Materials and Methods The Type 1 porous liquid (S-1-Liquid) was prepared in a three-step synthetic procedure, as shown in Scheme 1. Scheme 1. Preparation of Porous Liquid with Nanosized Silicalite-1 Zeolite. Scheme 1. Preparation of Porous Liquid with Nanosized Silicalite-1 Zeolite. 2.1. Synthesis of nanosized Silicalite-1 2.2. Surface sol-gel process (SSP) on Silicalite-1 The SSP on S-1 surface was based on literature reports [21]. Typically, 1.0 g of predried S-1 zeolite powder was added into a reactor under an anhydrous condition. Subsequently, 5 mL of titanium(IV) butoxide (97%, Aldrich) in a mixture of 10 mL of anhydrous toluene (99.8%, Aldrich) and 10 mL of anhydrous methanol (99.8%, Aldrich) was added into the reactor through a syringe. After 30 min, the precipitate was separated and washed with anhydrous methanol to remove the unreacted titanium(IV) butoxide. After that, an excess amount of water was mixed with the resulting sample to hydrolyze the monolayer of titanium oxide. Finally, the sample was washed with anhydrous methanol several times and dried at 40 ℃ in a vacuum oven. 1. Introduction Zeolites, a family of microporous aluminosilicates characterized by a regular system of inner channels and uniform open pores [1,2], have been widely used in size and shape-selective absorption/separation [3-11] and catalysis [12-15] due to their sharp pore size distribution, large surface area and thermal/hydrothermal stability. When zeolites are used as adsorbents, they have high adsorption capacity and selectivity for a variety of gas such as He [4], CO2 [7], O2 [10], N2, CH4, C2H6 [11], and so on. As solid adsorbents, they have many advantages, such as lower energy penalties in adsorption- desorption cycles, but they are difficult to apply in conventional liquid processes because of their solid properties [16,17]. One way to solve this problem is liquefied the zeolites into porous liquids that combine the properties of fluidity and permanent porosity. There are three types of porous liquids proposed by James et al. based on the nature of the host systems [16]. Type 1 is neat liquid hosts that cannot collapse or interpenetrate, type 2 and 3 are rigid hosts or particles of microporous frameworks dispersed in sterically hindered solvents, respectively. By now, there are several porous liquids have been reported. Dai’s group had reported a Type 1 porous liquid using hollow silica spheres as hosts (denoted by OS@HS), and determined the gas separation for N2/CO2 [18]. Although the gas permeability and selectivity are moderately low, the good tunability of this hybrid system affords ample choices for further optimization. James and co- workers had prepared “porous liquids” by dissolving rigid organic cage molecules into a sterically hindered solvent, the solubility of methane gas in this liquid has increased for about 8 times [17]. We have reported a class of Type 3 porous liquids synthesized by solution mixing of porous hosts (ZIF- 8, ZSM-5 and Silicalite-1) and rationally designed ionic liquids [19]. The CO2 capacities measurements confirm the permanent porosity in these liquids. These liquids have potential applications in many fields such as gas separation, storage and transport. Herein, a Type 1 porous liquid based on nanosized silicalite-1 (S-1) zeolite, denoted as S-1- Liquid, has been successfully prepared. The compound was characterized by Fourier-transform infrared (FT-IR), thermogravimetric analysis (TGA), X-ray diffraction (XRD), N2 adsorption/desorption, scanning electron microscopy (SEM) and transmission electron microscopy (TEM). The positron annihilation lifetime spectroscopy (PALS) and CO2 capacities determined by the intelligent gravimetric analyser (IGA) were used to demonstrate its porosity. 2.3. Preparation of S-1-Liquid 3. Results and Discussion The Fourier-transform infrared (FT-IR) spectra of products in each step are presented in Figure 1a. For the nanosized S-1 zeolite, the absorption peak at 799 cm-1 is due to the symmetric stretching vibrations of the Si–O–Si bonds of zeolite and the bands at 1074 cm-1 and 1225 cm-1 are attributed to the asymmetric stretching vibrations of the Si–O–Si bonds. The IR spectrum of S-1 after SSP is closely related to that of S-1 (Figure S1). After surface modification, some featured bands assigned to the OS moiety are clearly visible in the OS@S-1 spectrum, such as the stretching and bending vibrations of - CH2- backbones at 2928 cm-1, 2870 cm-1 and 1470 cm-1. The bands at 799 cm-1, 1074 cm-1 and 1225 cm-1, which are attributed to the stretching vibrations of the Si–O–Si bonds of zeolite, are further enhanced. In the spectrum of the S-1-Liquid, additional bands such as 2868 cm-1, 1724 cm-1, 1186 cm-1, 1094 cm-1 are attributed to the aliphatic, phenyl, sulfonate and ether, respectively. It means that the OS@S-1 is surrounded by the PEGS completely to obtain the S-1-Liquid. q y p y Figure 1. FT-IR spectra (a) and TGA trace (b) of S-1, OS@S-1 and S-1-Liquid. Figure 1. FT-IR spectra (a) and TGA trace (b) of S-1, OS@S-1 and S-1-Liquid. Figure 1b shows the thermogravimetric analysis (TGA) of S-1, OS@S-1, and S-1-Liquid. There is about 2.7% of mass loss during heating until the temperature reaches 700 ℃ for the S-1, according to the removal of the adsorption water. The S-1 after treated by SSP has a mass loss of about 2.8% (Figure S2), similar to the S-1, which means that there are no organic groups residue on S-1 surface after SSP. For the OS@S-1, the loss weight is about 13.3%, corresponding to the decomposition of OS. In comparison, when the S-1 before treated by SSP reacts with the OS, the mass loss is about 6.8%, much lower than OS@S-1 (Figure S2). It is demonstrating that the S-1 after SSP has more surface hydroxyl compared to the S-1 to react with the OS. It means that the surface sol-gel process is efficient to increase the surface hydroxyl of S-1. There is no significant mass loss during heating until the temperature reaches approximately 190 ℃, demonstrating that the S-1-Liquid is solvent-free. 2.3. Preparation of S-1-Liquid 1.0 g of S-1 was dispersed in 20 mL deionized water and sonicated for 10 min. Then, 2.0 mL of organosilane (OS), (CH3O)3Si(CH2)3N+(CH3)(C10H21)2Cl, was added into the suspension under vigorous stirring. Subsequently, the mixture was aged at room temperature for 24 h. After that, the pricipitate, denoted as OS@S-1, was washed with water for three times and with ethanol for three doi:10.20944/preprints201911.0181.v1 times, respectively, and dried at 100 ℃ overnight. Finally, the OS@S-1 was treated by 15.0 mL poly(ethylene glycol) tailed sulfonate (PEGS, 16.5%, C9H19-C6H4-(OCH2CH2)20O-(CH2)3SO3K+) at 70 ℃ for 24 h. The mixture was dried at 70 ℃ and dispersed in 15.0 mL acetone for three times to remove the KCl by-product. The sample was dried at 70 ℃ for 24 h to obtain the S-1-Liquid. The S-1-Liquid was kept at 40 ℃ under vacuum for use. In the beginning, nanosized S-1 zeolite was used directly to prepare the S-1-Liquid, as shown in Scheme 1(a). But disappointingly, after the replace of chloride anion of the OS by PEGS, we can’t obtain a stable liquid phase. It is probably because there are too few hydroxy groups on the surface of the S-1 zeolite. Then we changed the strategy. The surface sol-gel process (SSP) was used to increase the surface hydroxy groups of S-1 zeolite before the surface modification by OS, as shown in Scheme 1(b), yielding an optically transparent zeolite-based porous liquid (S-1-Liquid) at room temperature. 3. Results and Discussion From 190 ℃ to 460 ℃, there is 67% of mass loss for S-1-Liquid, corresponding to the decomposition of organic groups around the S-1 surfaces. The final loss weight is 66.5% when the temperature approached 700 ℃. Preprints (www.preprints.org) | NOT PEER-REVIEWED | Posted: 15 November 2019 doi:10.20944/preprints201911.0181.v1 Peer-reviewed version available at Materials 2019, 12, 3984; doi:10.3390/ma12233984 doi:10.20944/preprints201911.0181.v1 As shown in Figure 2a, the X-ray diffraction patterns of S-1 and S-1-Liquid show the similar peaks characteristic of the MFI-type zeolite, indicating the structure of S-1 has been preserved in the liquid. To confirm that the pores of S-1 zeolite remained empty after OS modification, OS@S-1 was also characterized by N2 adsorption/desorption isotherms (Figure 2b). There was no significant change in the N2 adsorption/desorption isotherm for OS@S-1, compared to S-1 zeolite. It means that the pores of S-1 zeolite remained empty after surface modification by OS. This is an important result to demonstrate that the OS@S-1 still has empty pores for gas transport or storage. Figure 2. XRD patterns of S-1 and S-1-Liquid (a) and N2 adsorption/desorption isotherms of S-1 and OS@S-1 samples (b). Figure 2. XRD patterns of S-1 and S-1-Liquid (a) and N2 adsorption/desorption isotherms of S-1 and OS@S-1 samples (b). Figure 3. SEM (a) and TEM images (b) of S-1-Liquid. Figure 3. SEM (a) and TEM images (b) of S-1-Liquid. The nanostructure of S-1-Liquid was imaged by scanning electron microscopy (SEM) and transmission electron microscopy (TEM). As observed in Figure 3, the S-1 nanocrystals are defined well in the PEGS to form a liquid-like polymeric medium. These nanocrystals are combined together to form large agglomerates through the strong interaction among the surface functional groups. Positron annihilation lifetime spectroscopy (PALS) was then used to determine the average size of the pores contained within the studied S-1-Liquid. The PALS technique measures the lifetime and intensity of positions that annihilate in materials when the material of interest is exposed to a positron source, which is 22NaCl in this study. Once entering the materials, positrons experience thermalization, diffusion, and finally are trapped and annihilated by electrons. The positron lifetime is dependent on the overlap of the positron wavefunction with the wavefunctions of the electrons in materials. Therefore, the electron density distribution in materials, in particular the presence of open volume can be obtained by using this technique. Peer-reviewed version available at Materials 2019, 12, 3984; doi:10.3390/ma12233984 Figure 4. The positron lifetime traces of S-1-Liquid collected at 298 K. Figure 4. The positron lifetime traces of S-1-Liquid collected at 298 K. Figure 4 shows the recorded positron lifetime spectrum as well as the fitting curve by applying 3-component analysis. The first lifetime (τ1) indicates the positrons being annihilated in the bulk of the materials (< 200 ps). The second lifetime, τ2, is attributed to the positrons being annihilated in defects (300-500 ps). The third lifetime, τ3, refers to ortho-positronium (o-Ps), a parallel spin complex of a positron and electron, which forms in low electron density regions, such as free volumes, holes, interfaces, and pores. The o-Ps lifetime and intensity are often associated with the size and concentration, respectively, of the open volume in materials. From the fitting procedure one obtains positron lifetimes and intensities. The o-Ps lifetime, τ3, is typically related to the average radius of a free volume element, r, which is assumed to be spherical, by Tao-Eldrup model, t 3 = 1 2 1- r r + Dr + 1 2p sin 2p r r + Dr é ëê ù ûú æ èç ö ø÷ -1 (1) (1) where r is the empirical electron layer thickness, which is taken to be 1.66 Å[23, 24]. By applying equation (1), the o-Ps lifetime of 2.251ns correlates to an average pore size of 0.61 nm in the S-1-Liquid, this is consistent with the pore size of S-1 zeolite. where r is the empirical electron layer thickness, which is taken to be 1.66 Å[23, 24]. where r is the empirical electron layer thickness, which is taken to be 1.66 Å[23, 24]. By applying equation (1), the o-Ps lifetime of 2.251ns correlates to an average pore size of 0.61 nm in the S-1-Liquid, this is consistent with the pore size of S-1 zeolite. By applying equation (1), the o-Ps lifetime of 2.251ns correlates to an average pore size of 0.61 in the S-1-Liquid, this is consistent with the pore size of S-1 zeolite. Figure 5. CO2 adsorption-desorption isotherms of S-1-Liquid and PEGS collected below 10 bar at 298 K Figure 5. CO2 adsorption-desorption isotherms of S-1-Liquid and PEGS collected below 10 bar at 298 K To further prove that the pores of S-1 are still empty in the S-1-Liquid, the CO2 capacities of it was determined by an Intelligent Gravimetric Analyser. 3. Results and Discussion The positron lifetime is defined as the time interval between the injection of positions into the materials (indicated by a birth gamma ray of 1.274MeV) and the decay of the positron-electron pairs (indicated by two 0.511MeV gamma rays traveling in opposite directions). Data were collected using a digital oscilloscope with a system timing resolution of 173 ps. More details about the PALS system could be found in Ref. [22]. doi:10.20944/preprints201911.0181.v1 4. Conclusions In summary, a Type 3 porous liquid S-1-Liquid was synthesized in a three-step synthetic procedure. This porous liquid is stable and homogeneous at room temperature. It exhibits enhanced CO2 adsorption capacity due to the permanent porosity, which was also confirmed by PALS results. We believe that this porous liquid has potential applications in many fields such as gas storage and transport. Supplementary Materials: The following are available online at www.mdpi.com/xxx/s1, Figure S1: FT-IR spectra of S-1 and S-1 treated by SSP; Figure S2: TGA trace of S-1, S-1 after SSP, OS@S-1 and OS@S-1 after SSP. Author Contributions: conceptualization, T.T.; methodology, T.T.; investigation, Y.L.; resources, T.T.; data curation, Y.L.; writing—original draft preparation, Y.L.; writing—review and editing, T.T.; visualization, Y.B.; funding acquisition, T.T. Author Contributions: conceptualization, T.T.; methodology, T.T.; investigation, Y.L.; resources, T.T.; data curation, Y.L.; writing—original draft preparation, Y.L.; writing—review and editing, T.T.; visualization, Y.B.; funding acquisition, T.T. Funding: This work was funded by National Natural Science Foundation of China (21771080), Science and Technology Project of the “13th Five-Year Plan” of Jilin Provincial Department of Education (JJKH20180166KJ). Funding: This work was funded by National Natural Science Foundation of China (21771080), Science and Technology Project of the “13th Five-Year Plan” of Jilin Provincial Department of Education (JJKH20180166KJ). Acknowledgments: We are thankful for support of this work by the State Key Laboratory of Inorganic Synthesis & Preparative Chemistry, Jilin University. Acknowledgments: We are thankful for support of this work by the State Key Laboratory of Inorganic Synthesis & Preparative Chemistry, Jilin University. Conflicts of Interest: The authors declare no conflict of interest. Conflicts of Interest: The authors declare no conflict of interest. Conflicts of Interest: The authors declare no conflict of interest. Peer-reviewed version available at Materials 2019, 12, 3984; doi:10.3390/ma12233984 The CO2 uptake capacity of S-1-Liquid is enhanced compared to the PEGS, as shown in Figure 5. The CO2 uptake value of S-1-Liquid is 0.474 wt.% at the pressure of 1 bar, while the uptake value of PEGS is 0.261 wt.%. When the pressure increases to 10 bar, the CO2 uptake value of S-1-Liquid is 2.524 wt.%, which remains higher than that of PEGS (2.261 wt.%). Both the S-1-Liquid and PEGS have hysteresis loops. The S-1-Liquid remains doi:10.20944/preprints201911.0181.v1 more CO2 as the pressure decreases during the desorption process due to the permanent porosity. The CO2 uptake value of S-1-Liquid is 1.406 wt.% at 1 bar, much higher than that of PEGS (0.809 wt.%). There is 55.7% wt.% of CO2 remains in the S-1-Liquid, demonstrating the potential application for CO2 storage. more CO2 as the pressure decreases during the desorption process due to the permanent porosity. The CO2 uptake value of S-1-Liquid is 1.406 wt.% at 1 bar, much higher than that of PEGS (0.809 wt.%). There is 55.7% wt.% of CO2 remains in the S-1-Liquid, demonstrating the potential application for CO2 storage. References 1. Corma, A. Inorganic Solid Acids and Their Use in Acid-Catalyzed Hydrocarbon Reactions. Chem. Rev. 1995, 95, 559-614. 2. Yu, J.H.; Xu, R.R. Insight into the construction of open-framework aluminophosphates. Chem. Soc. Rev. 2006, 35, 593-604. 3. Xu, C.C.; Lu, X.F.; Wang, Z.B. Effects of sodium ions on the separation performance of pure-silica MFI zeolite membranes. J. Membrane Sci. 2017, 524, 124-131. 4. Ye, P.C.; Grahn, M.; Korelskiy, D.; Hedlund, J. Efficient Separation of N2 and He at Low Temperatur MFI Membranes. AIChE J. 2016, 62, 2833-2842. 5. Zhang H.; Xiao, Q.; Tsapatsis, M.; et al. Open-Pore Two-Dimensional MFI Zeolite Nanosheets for the Fabrication of Hydrocarbon-Isomer-Selective Membranes on Porous Polymer Supports. Angew. Chem. Int. Ed. 2016, 55, 7184 –7187 6. Xia, S.X.; Peng, Y.; Wang, Z.B. Microstructure manipulation of MFI-type zeolite membranes on hollow fibers for ethanol–water separation. J. Membrane Sci. 2016, 498, 324-335. 7. Sjöberg, E.; Barnes, S.; Korelskiy, D.; Hedlund, J. MFI membranes for separation of carbon dioxide from synthesis gas at high pressures. J. Membrane Sci. 2015, 486, 132-137. 8. Drobek, M.; Figoli, A.; et. al. PVDF-MFI mixed matrix membranes as VOCs adsorbers. Micropor. Mesopor. Mat. 2015, 207, 126-133. 9. Calero, S.; Gómez-Álvarez, P. On the performance of FAU and MFI zeolites for the adsorptive removal of a series of volatile organic compounds from air using molecular simulation. Phys. Chem. Chem. Phys., 2015, 17, 26451—26455. 10. Ye, P.C.; Sjöberg, E.; Hedlund, J. Air separation at cryogenic temperature using MFI membranes. Micropor. Mesopor. Mat. 2014, 192, 14-17. 11. Wang C.; Liu, J.Q.; Yang, J.F.; Li, J.P. A crystal seeds-assisted synthesis of microporous and mesoporous silicalite-1 and their CO2/N2/CH4/C2H6 adsorption properties. Micropor. Mesopor. Mat. 2017, 242, 231-237. 12. Wang, X.F.; Song, X.W.; Yu, J.H.; et al. Fabrication and Catalytic Performance of Highly Stable Multifunctional Core−Shell Zeolite Composites. Inorg. Chem. 2013, 52, 10708−10710. 13. Bare, S.R.; Corma, A.; Nemeth, L.T.; et al. Uniform Catalytic Site in Sn-β-Zeolite Determined Using X-ray Absorption Fine Structure. J. Am. Chem. Soc. 2005, 127, 12924-12932. Preprints (www.preprints.org) | NOT PEER-REVIEWED | Posted: 15 November 2019 doi:10.20944/preprints201911.0181.v1 Peer-reviewed version available at Materials 2019, 12, 3984; doi:10.3390/ma12233984 14. Janda, A.; Vlaisavljevich, B.; Bell, A.T.; et al. Effects of Zeolite Structural Confinement on Adsorption Thermodynamics and Reaction Kinetics for Monomolecular Cracking and Dehydrogenation of n‑Butane. J. Am. Chem. Soc. 2016, 138, 4739−4756. 15. Singh, B.; Sinha, A.K. Synthesis of hierarchical mesoporous vanadium silicate-1 zeolite catalysts for styrene epoxidation with organic hydroperoxide. J. Mater. Chem. A, 2014, 2, 1930–1939. 16. O’Reilly, N.; Giri, N.; James, S.L. Porous Liquids. Chem. Eur. J. 2007, 13, 3020 – 3025. 17. Giri, N.; Cooper, A.I.; James, S.L.; et al. Liquids with permanent porosity. Nature. 2015, 527, 216-221. 18. Zhang, J.S.; Mahurin, S.M.; Dai, S.; et al. Porous Liquids: A Promising Class of Media for Gas Separation. Angew. Chem. Int. Ed. 2015, 54, 932 –936. 19. Shan, W.D.; Tian, T.; Mahurin, S.M.; Xing, H.B.; Dai, S.; et al. New Class of Type III Porous Liquids: A Promising Platform for Rational Adjustment of Gas Sorption Behavior. ACS Appl. Mater. Interfaces. 2018, 10, 32−36. 20. Tosheva, L.; Valtchev, V.P. Nanozeolites: Synthesis, Crystallization Mechanism, and Applications. Chem. Mater. 2005, 17, 2494-2513. 21. Yan, W.F.; Dai, S.; et al. Surface Sol-Gel Modification of Mesoporous Silica Materials with TiO2 for the Assembly of Ultrasmall Gold Nanoparticles. J. Phys. Chem. B. 2004, 108, 2793-2796. 22. Hu, X.X.; Koyanagi, T.; Fukuda, M.; Katoh, Y.; Wirth, B.D.; and Snead, L.L. Defect evolution in single crystalline tungsten following low temperature and low dose neutron irradiation, Journal of Nuclear Materials, 2016, 470, 278-289. 23. Tao, S.J. Positronium annihilation in molecular substances, J. Chem. Phys. 1972, 56, 5499–5510. 24. Eldrup, M.; Lightbody, D.; Sherwood, J.N. The temperature dependence of positron lifetimes in solid pivalic acid, Chem. Phys. 1981, 63, 51–58.
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Efficacy of Nano-Encapsulated Mandarin Oil using (Polyethylene Oxide/Polyacrylamide) and Gamma Irradiation against Culex pipiens Larvae
Egyptian Academic Journal of Biological Sciences. F, Toxicology and Pest Control
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cc-by
4,820
Vol. 16 No. 1 (2024) www.eajbs.eg.net Citation: Egypt. Acad. J. Biolog. Sci. (F. Toxicology& Pest control) Vol.16(1) pp51-61 (2024) DOI: 10.21608/EAJBSF.2024.345753 Egypt. Acad. J. Biology. Sci., 16(1):51-61(2024) Egyptian Academic Journal of Biological Sciences F. Toxicology & Pest Control ISSN: 2090 - 0791 http://eajbsf.journals.ekb.eg/ Efficacy of Nano-Encapsulated Mandarin Oil using (Polyethylene Oxide/Polyacrylamide) and Gamma Irradiation against Culex pipiens Larvae Reda S. Hassan1; Thanaa M. Sileem1; Waheed A. A. Sayed1 and Mohamed M. Ghobashy 2 1 Biological Applications Department, Nuclear Research Centre- Egyptian Atomic Energy Authority. Cairo, Egypt. 2 Radiation Research of Polymer Chemistry Department, National Center of Radiation Technology, Egyptian Atomic Energy Authority, Cairo, Egypt. *E. Mail : redahassan28812@yahoo.com ; thanaasileem@yahoo.com ; waheed.sayed@eaea.org.eg ; Mohamed.ghobashy@eaea.org.eg ________________________________________________________________________________ ARTICLE INFO ABSTRACT Article History Nano-encapsulation of essential plant oils may prove to be the most Received:8/2/2024 effective approach to overcome their application challenges against insect Accepted:14/3/2024 pests. Larvicidal properties of polyethylene oxide/polyacrylamide Available:18/3/2024 (PEO/PAAM) nanogels of mandarin essential oil (MEO) against Culexpipiens _______________ larvae were investigated. The nano-gel was prepared using an intramolecular Keywords: crosslinking method initiated by gamma irradiation. The resulting mandarin Nano-gel, essential oil (PEO/PAAm) nanogel (MEON) exhibited monodispersity, a mosquito, relatively small size distribution, and a low negative surface charge of -1.1 mV, Larvicide, suggesting enhanced stability and reduced electrostatic interactions. The 2nd mortalityinstar larvae were more sensitive to MEON than the 3rd and 4th instar larvae at responses, the lower doses of 10 and 15 ppm. The LC50 and LC99 for the MEON were physical (11.5 and 18.4 ppm) for 2nd instar larvae; (14.5 and 23.6 ppm) for 3rd instar larvae; and (15.3 and 33.8 ppm) for the 4th instar larvae, respectively, at 48 characteristics. hours after treatment. These results shed light on MEON's physical attributes, surface qualities, and biological assay and suggest that it might be a useful substance for Culex pipiens management. INTRODUCTION Culex mosquitoes are known to spread important diseases to humans, for instance, elephantiasis by the transmission of Lymphatic filariasis and West Nile, Rift Valley fever, and encephalitis by the transmission of arboviruses (Madeira et al., 2024). Culex pipiens is the most abundant mosquito worldwide and is widely distributed in urban and suburban regions (Villena et al., 2024). Excessive use of chemical insecticides has caused environmental pollution and vector resistance (Hillary et al., 2024). Essential oils (EOs) were reported as effective toxic materials against mosquito larvae (Vivekanandhan et al., 2023). The United States Authority for Food and Drugs has classified orange oils as safe. The oil contains many constituents such as limonene, monoterpenes, α-pinene, βpinene, terpinolene, and octanal (de Jesus Oliveira et al., 2024). Citrus reticulata, a mandarin EO that is a member of the Rutaceae family, has been the subject of numerous attempts to Citation: Egypt. Acad. J. Biolog. Sci. (F. Toxicology& Pest control) Vol.16(1) pp51-61 (2024) DOI: 10.21608/EAJBSF.2024.345753 52 Reda S. Hassan et al. demonstrate the insecticidal action of orange essential oils (EOs) against various insect pest species (Sayed et al., 2020; Marouf and Harras, 2022). (Brah et al., 2023). Although EOs have a toxic action against insect pests, they should be formulated to avoid the vaporization of volatile chemicals to preserve their actions (Osanloo et al., 2022). The submicron emulsion of nano-encapsulated essential oils (EOs) has been suggested as a potentially effective pesticide formulation; these formulations improve the solubility of poorly water-soluble oils (Ibrahim, 2020). Many nanoencapsulations of EOs were reported as pesticide formulations against mosquitoes (Esmaili et al., 2021). Nano-gels, as a class of nanoscale hydrogels, have attracted significant attention in recent years due to their unique properties and promising applications in various fields, including biomedicine and drug delivery. One of the key challenges in nano-gel synthesis is achieving a controlled and uniform size distribution, which is crucial for their performance and effectiveness in specific applications. Various methods have been explored for nano-gel synthesis, including chemical crosslinking, self-assembly, and radiation-induced crosslinking (Matusiak et al., 2020a). The ideal intramolecular crosslinking method for synthesizing nanogels has been highlighted (Rosiak et al., 2005). Because gamma irradiation can both start and control crosslinking reactions in aqueous polymer systems, it has become a potential process for creating nano encapsulation. This technique offers advantages such as simplicity, scalability, and the absence of the need for initiators or additional chemicals. Specifically, the use of gamma irradiation in the intramolecular crosslinking process has demonstrated potential in the production of nano-gels with a restricted size distribution, a high crosslinking density, and a semi-permeable membrane (Alshangiti et al., 2019). For crosslinked hydrogel (Ghobashy et al., 2021b) to be used as a template (Ghobashy et al., 2021a) and blend polymer (Ghobashy et al., 2017) hydrogel points to utilize as green renewable assets to protect the environment from negative effects (Madani et al., 2022). Previous studies from our laboratory have indicated that irradiation treatment is a useful method for these hydrogel points. In order to boost the larvicidal efficacy of mandarin essential oil and expand its application against Culex pipiens, the current trial intends to create a unique formulation of the oil. MATERIALS AND METHODS Insects and Chemicals: Mosquito larvae were reared in the insectary of the nuclear reach center, Inshas, Egypt. The larvae were reared under optimum humidity (75 ± 5%), temperature (25 ± 2◦C), and a photoperiod of 12:12 light/dark hours. Mandarin essential oil was purchased from the "Binsib Company for Agriculture Development" in Cairo, Egypt. PEO was obtained from Loba-chemieindoaustranal Co., Mumbai, India. Acrylamide monomer (AAm) was obtained from Sigma-Aldrich Co. Hydrochloric acid (35.5 wt.%) and sodium hydroxide flakes were supplied from the market. Gamma-Irradiation-Induced Polymerization of (PEO/PAAm) Nanogel: The optimum intramolecular crosslinking technique is used in the particular instance of the synthesis of polyethylene oxide/polyacrylamide (PEO/PAAm) nanogel, with gamma irradiation catalyzing radical polymerization processes. The experimental procedure involves preparing a 0.5 wt% solution of the AAm monomer and a 0.1 wt% solution of PEO by dissolving 0.05 g and 0.01 g of PEO in 10 ml of distilled water. The resulting mixture is then subjected to sonication for 5 minutes, which promotes the mixing and dispersion of the components within the solution. The pH of the solution is adjusted to 1 using a 35.5 wt% hydrochloric acid (HCl) solution. The pH adjustment is crucial for the subsequent polymerization reaction. Following the pH adjustment, the solution is exposed to gamma Efficacy of Nano-Encapsulated Mandarin Oil using and Gamma Irradiation against Culex pipiens Larvae 53 irradiation, which serves as the initiator of radical polymerization reactions. The irradiation dose employed in this synthesis is 5 kGy. The synthesis is conducted using a 60Co source established at NCRRT, EAEA, in Cairo, Egypt. The gamma irradiation triggers the crosslinking of the polymers, leading to the formation of the PEO/PAAm nanogel. Encapsulation of Mandarin Oil Inside (PEO/PAAm) Nanogel: The pH of the resulting suspension solution of PEO/PAAm) nanogel was adjusted to 6 by adding a concentrated solution of NaOH (added slowly while stirring at 150 rpm, allowing the nanogel particles to agitate). The resulting clear solution (A) was taken to the ultrasonic bath (70 w) for 15 minutes at room temperature. For the encapsulation of mandarin oil inside the PEO/PAAm) nano-gel, the emulsion solution of oil (B) was prepared by dissolving 5 ml of oil with 1 ml of tween 80 in 10 ml of distilled water, stirring at 350 rpm for 10 minutes, and keeping at 4 ºC for 24 hours. Then, both solutions (A) and (B) were mixed gradually with stirring for 10 minutes, and the pH of the solution was adjusted to 4 using HCl solution (35.5 wt. %). The pH adjustment is crucial for maintaining the stability and properties of the encapsulated mandarin oil within the nanogel. The resulting mixture now contains the encapsulated mandarin (MEO) essential oil within the PEO/PAAm) nanogel (MEON). Characterization of (PEO/PAAm)/MEO Nano-gel (MEON): Transmission Electron Microscope (TEM): The structure of the MEO nanogel was examined by transmission electron microscopy (H-7650, Hitachi, Japan); the prepared formulation was already diluted with distilled water before the examination. One drop of the MEON formulation was put on a film-coated copper grid before staining with a (2% w/v) phosphotungstic acid solution. The grid was allowed to dry for 10 minutes at ambient temperature before visualization under a transmission electron microscope. Dynamic Light Scattering (DLS) and Zeta Potential: The particle size (PS) and polydispersity index (PDI) were investigated using Zetasizer Nano ZS (Ver.6.12, Malvern Instruments Ltd., Worcestershire, England) using the dynamic light scattering technique at room temperature. MEON was previously diluted with distilled water (100-fold) before any measurements. The structure of the MEON was examined by transmission electron microscopy (H-7650, Hitachi, Japan); the prepared formulation was already diluted with distilled water before the examination. One drop of the EO-loaded formulation was put on a film-coated copper grid before staining with a (2% w/v) phosphotungstic acid solution. The grid was allowed to dry for 10 minutes at ambient temperature before visualization under a transmission electron microscope. Bioassay Tests: A bioassay was performed using second, third, and fourth instar larvae of Culex pipiens kept at a temperature of 25 ± 2 °C and a relative humidity of 75 ± 5%. The larvae were treated with different concentrations of PEO, PAAM, and MEO nanogel according to the standard protocol. Four concentrations of nanogel (0, 10, 15, 20, 25, and 30 ppm) were used. For each treatment, five replicates of twenty-five larvae were used. Mortality was recorded after 24- and 48-hours post-treatment. Statistical Analysis: Lethal concentrations were determined at the 95% confidence level using a probit regression line. LC50 and LC99 were calculated (Finney, 1971). The percentages of larval mortality were calculated for each concentration of the tested samples. Correction for control mortality was conducted using Abbott's formula. A one-way ANOVA followed by Tukey's multiple comparison tests (P < 0.05) was carried out to illustrate the significance of the tested samples from the control groups. All statistical analysis was conducted using the statistical package for social science (SPSS) software version 14. 54 Reda S. Hassan et al. RESULTS AND DISCUSSION Characterization of (PEO/PAAm)/MEO Nano-gel: Figure 1, shows a transmission electron microscopy (TEM) image of MEON particles. The nano-gel particles appear monodisperse, meaning they have a uniform size distribution as seen in the TEM image. The diameters of the nano-gel particles are reported to be in the range of 130–160 nm based on the scale bar in the TEM micrograph. Fig. 1: Transmission electron microscopy (TEM) of MEON. The monodispersity and relatively small nano-gel particle diameters suggest the nano-gel may be suitable for various biomedical applications. The hydrodynamic diameter and distribution of encapsulated mandarin oil were determined by the dynamic light scattering (DLS) technique (Fig. 2.a). To deliberate the size distribution profile and polydispersity of the synthesized nanogel of mandarin oil, the particle size distribution of the MEON particles, as measured using a particle size analyzer, is reported to be 205 nm. This indicates that the nanogel has a relatively uniform size distribution centered on this value. Fig. 2: particle size analyzer (a) particle size distribution = 205 nm and Zeta potential = -1.1 mV (b) of MEON. Efficacy of Nano-Encapsulated Mandarin Oil using and Gamma Irradiation against Culex pipiens Larvae 55 The zeta potential of the nanogel indicates that all of the samples were negatively charged. The absolute value of the zeta potential reached a maximum when the amount of nanogel was 4.2 × 10−2% w/v. The zeta potential value of encapsulated mandarin oil was 23 mV (Fig. 2.b), which indicates the strong repulsion between particles and the increasing stability of the encapsulated oil. The gamma irradiation technique enables the synthesis of nano-gels in a one-step, simple, and scalable manner. Water-soluble polymers can be intramolecularly crosslinked by radiation to create nano-gels (Matusiak et al., 2020). Based on the research of Rosiak et al. (2005), the optimal intermolecular crosslinking technique uses high-energy, low-LET (linear energy transfer) ionizing radiation to cause aqueous polymers to crosslink. This method results in nano-gels with a high degree of crosslinking and a narrow size distribution (Ashfaq et al., 2021). Radiation-induced crosslinking of polymers can be used to create hydrogels and their nanoscale counterparts, nano-gels (Dispenza et al., 2017). To develop botanical biopesticides for use in plant protection, numerous studies have attempted to create EO-based nano-emulsions (Campolo et al., 2020). Nano-emulsions are kinetically stable systems with droplets ranging in size from 50 to 200 nm (Lakshmayya et al., 2023). Nanoencapsulation using polymers is a well-known method for the preservation of essential oils. It offers plenty of benefits, including improved water solvency, compelling assurance against degradation, the avoidance of volatile component evaporation, and tightly controlled and targeted release (Lammari et al., 2020). Bioassay Figure 3, shows the mortality of 2nd instar larvae of C. pipines at 24 h after treatment with MEON concentrations. Significant mortalities were obtained in the cases of 15, 20, and 25 ppm of MEON compared to concentrations of 0.0 and 10 ppm (F(4, 24) = 2464.2, P< 0.05). Fig. 3: Mortality percentages of different concentrations (ppm) of MEON against 2nd instar larvae of C. pipines at 24 and 48 h post treatments. While after 48 hours, mortality increased gradually by increasing the concentration levels (F(4,24) = 29.5, P< 0.05). The higher mortalities (96.0, 99.2, and 99.9%) were observed at the tested concentrations (15, 20, and 25 ppm), respectively. Similarly, higher mortality (99.7%) was obtained for 3rd larvae treated for 25 ppm concentration after 24 h treatments than the mortalities recorded for the other tested concentrations (F(4,24) = 461.6, P< 0.05) (Fig. 4). While within 48 h after treatment, the mortality at 10 ppm concentration was still drastically low compared to 15, 20, and 25 ppm (F(4,24) = 682.5, P< 0.05). Obtained data revealed that the mortalities of the 3rd larvae were lower than those of the 2nd larvae. 56 Reda S. Hassan et al. Fig. 4. Mortality percentages of different concentrations (ppm) of MEON against 3rd instar larvae of C. pipines at 24 and 48 h post treatments. As shown in Figure 5, the mortality percentages of treated 4th larvae at 20 ppm were relatively lower (50.4%) compared to 25 ppm (99.56%) at 24 h after treatment (F (4,24) = 433.1, P< 0.0005), while they were highly increased to 68.0% at 20 ppm, and the same percentage of mortality (99.56%) was obtained at 25 ppm for 48 h after treatment (F(4,24) = 249.3, P< 0.0005). Moreover, the percentage of mortality increased from 7.2 to 15.2 for 24 and 48 hours at 10 ppm, respectively. Indeed, many trials indicated that orange EOs have toxic effects on mosquito vector diseases, for instance, anopheles mosquitoes (Umar et al., 2024), Culex quinquefasciatus (Suwansirisilp et al., 2013), Culex pipiens (Michaelakis et al., 2009), and Aedes albopictus (Li et al., 2023). The obtained results indicated that the MEON concentration (25 ppm) exhibited more than 99 % mortality in C. pipiens instars larvae, which was drastically lower than those recorded for bulk orange EOs in the previous studies, which ranged from 300 to 1000 ppm (M. Azmy et al., 2019a) (Manimaran et al., 2012). It was demonstrated that mandarin EO inhabited the acetylcholine esterase, carboxyl esterase, acid phosphatase, and alkaline phosphatase of C. pipiens larvae (Badawy et al., 2018). It was found that over 2000 secondary metabolites have been identified from orange essential oils, with the most important active ingredients being diterpenes, monoterpenes, terpenes, and sesquiterpenes, which may refer to the toxicological effects of the orange EOs against insect pests (Brah et al., 2023). The current study is comparable with several studies on nanoemulsions based on EOs as effective insecticides (Sogan et al., 2023; Abdel-Baki et al., 2021). Because the EOs have destitute water solubility, larvicides utilized to manage mosquito larvae ought to be dissolvable in water since they are aquatic life forms. To bypass this natural barrier, EOs should be formed into nanoemulsions (Sharifiyan et al., 2024). The obtained results in the concentration mortality bioassays were satisfactorily described by the probit model (Fig. 6). Efficacy of Nano-Encapsulated Mandarin Oil using and Gamma Irradiation against Culex pipiens Larvae 57 Fig. 5: Mortality percentages of different concentrations (ppm) of MEON against 4th instar larvae of C. pipines at 24 and 48 h post treatments. Fig. 6: Mortality-responses of C. pipines larvae (2nd, 3rd and 4th) for different concentrations (ppm) of MEON at 48 h post treatments. 58 Reda S. Hassan et al. The LC50 was (11.5, 14.8 and 15.3 ppm) for the 2nd instar, 3rd and 4th instar, respectively (Fig. 6). Also, the LC99 was (18.4, 23.6 and 33.8 ppm) for the 2nd instar, 3rd and 4th instar, respectively. The results indicated that LC50 the fourth instar was more resistant to treatment, but the second instar was much more vulnerable to MEON (no overlap in 95% fiducial limits), according to the LC50 and LC99 values. As shown in Figure 6, a concentration-dependent association between MEON and larval mortality was demonstrated via regression analysis. Insecticidal properties of orange oils were reported for larvicidal activity against C. pipiens in a previous study that suggested it might be because of transanethole, the main component of the EO (Kamaraj et al., 2023). The orange EO nanoemulsion's larvicidal action could be attributed to limonene, the main ingredient, which Saad (2013) showed has insecticidal qualities. Our results are in line with several studies on nanoformulations that use essential oils (EOs) as effective pesticides (Duarte et al., 2015; Barradas and de Holanda e Silva, 2021). Our results are consistent with those of SaneiDehkordi et al. (2022), who discovered that the LC50 and LC90 of nano orange EO for the third larvae of Anopheles stephensi and Culex quinquefasciatus, respectively, were the low concentrations (6.63 and 12.29 µg/mL) and (4.9 and 16.4 µg/mL), respectively. The results we obtained are in agreement with those reported by Theochari et al. (2020), who observed that a concentration of 27.4 ppm of nanoemulsion orange EO was reported as an LC50 against C. pipines larvae in their third instar. Based on our research, it appears that the MEON could be the most effective way to address the issues with using EO against C. pipiens. It does this by preventing rapid evaporation and degradation in the environment, offering a well-soluble formulation, and lowering the dosage required. To guarantee this novel material's safety for the environment and non-target creatures, more investigation is necessary for the risk evaluation of the material. Studying field applications and challenges related to economic feasibility is also necessary. CONCLUSIONS Orange essential oils have become one of the major bio-pesticides against mosquito vector diseases due to their known toxicity and their environmental benefits. However, it is essential to preserve the orange essential oils by maintaining their stability against environmental conditions since they are chemically unstable and can degrade when exposed to air, light, moisture, and mild temperatures. High doses and poor water solubility are also significant considerations when using essential oils. The designated emphasis in this trial is using nano-gel as a green encapsulation of mandarin essential oil in the hope of revolutionizing their application challenges. The aqueous polymer polyethylene oxide/polyacrylamide was crosslinked by gamma irradiation, producing polyethylene oxide/polyacrylamide nano-gels as a result. Mandarin essential oil (MEO) was used to dissolve the solution and create mandarin essential oil nano-gel (MEON), which has a restricted size distribution and a high degree of cross-linking. The resulting MEON presented spherical shapes with homogeneous surfaces. The average size of MEON particles ranged from 130 to 160 nm; a low negative zeta potential of −23.0 mV indicated high stability of the emulsion. The results demonstrated that the dose of 25 ppm of MENO exhibited 99.9% mortality in the three instar larvae of C. pipiens. Further research on the risk assessment of MENO is required for its safety properties. Ethics Approval and Consent to Participate: Not applicable. Competing interests: The authors declare no conflict of interest. Authors Contributions: I hereby verify that all authors mentioned on the title page have made substantial contributions to the conception and design of the study, have thoroughly reviewed the manuscript, confirm the accuracy and authenticity of the data and its interpretation, and consent to its submission. Funding: No funding was received. Efficacy of Nano-Encapsulated Mandarin Oil using and Gamma Irradiation against Culex pipiens Larvae 59 Availability of Data and Materials: The authors declare that they have no objection to the availability of data and materials. EFERENCES Abdel‐Baki, A. A. S.; Aboelhadid, S. M.; Sokmen, A.; Al‐Quraishy, S.; Hassan, A. O. and Kamel, A. A. (2021). Larvicidal and pupicidal activities of Foeniculumvulgare essential oil, trans‐anethole and fenchone against house fly Muscadomestica and their inhibitory effect on acetylcholinestrase. Entomological Research, 51(11): 568577. Alshangiti, D. M.; Ghobashy, M. M.; Alkhursani, S. A.; Shokr, F. S.; Al-Gahtany, S. A., and Madani, M. M. (2019). Semi-permeable membrane fabricated from organoclay/PS/EVA irradiated by ɣ-rays for water purification from dyes. Journal of Materials Research and Technology, 8(6), 6134-6145. Ashfaq, A.; An, J.-C.; Ulański, P. and Al-Sheikhly, M. J. P. (2021). On the mechanism and kinetics of synthesizing polymer nanogels by ionizing radiation-induced intramolecular crosslinking of macromolecules. Pharmaceutics, 13(11): 1765. Badawy, M. E.; Taktak, N. E. and El-Aswad, A. F. (2018). Chemical composition of the essential oils isolated from peel of three citrus species and their mosquitocidal activity against Culex pipiens. Natural product research, 32(23): 2829-2834. Barradas, T. N. and de Holanda e Silva, K. G. J. E. C. L. (2021).Nanoemulsions of essential oils to improve solubility, stability and permeability: a review. Environmental Chemistry Letters, 19(2): 1153-1171. Brah, A. S.; Armah, F. A.; Obuah, C.; Akwetey, S. A. and Adokoh, C. K. (2023). Toxicity and therapeutic applications of citrus essential oils (CEOs): A review. International Journal of Food Properties, 26(1): 301-326. Campolo, O.; Giunti, G.; Laigle, M.; Michel, T.; Palmeri, V. J. I. C. and Products (2020). Essential oil-based nano-emulsions: Effect of different surfactants, sonication and plant species on physicochemical characteristics. Industrial Crops and Products, 157: 112935. de Jesus Oliveira, J.; dos Passos, E. M.; Alves, S. M.; Sarmento, V. H.; Bjerk, T. R.; Cardoso, J. C.; Blanco-Llamero, C.; Souto, E. B.; Severino, P. and da Costa Mendonça (2024). Microemulsion of essential oil of Citrus aurantium var. dulcis for control of Aleurocanthus woglumi and evaluation of selectivity against Aschersonia aleyrodis and Ceraeochrysa cornuta. Crop Protection, 106586. Dispenza, C.; Spadaro, G.; and Jonsson M. J. (2017). Radiation engineering of multifunctional nanogels." Applications of Radiation Chemistry in the Fields of Industry, Biotechnology and Environment, 95-120. Duarte, J. L.; Amado, J. R.; Oliveira, A. E.; Cruz, R. A.; Ferreira, A. M.; Souto, R. N.; Falcão, D. Q.; Carvalho, J. C. and Fernandes, C. P. (2015). Evaluation of larvicidal activity of a nanoemulsion of Rosmarinus officinalis essential oil.Revista Brasileira de Farmacognosia, 25: 189-192. Esmaili, F.; Sanei-Dehkordi, A.; Amoozegar, F. and Osanloo, M. J. (2021). A review on the use of essential oil-based nanoformulations in control of mosquitoes. Research in Applied Chemistry, 11(5): 12516-12529. Finney, D. J. (1971). Probit analysis: 3d ed,Cambridge University Press. Cambridge University Press. Ghobashy, M. M.; El-Sawy, N. M. and Kodous, A. S. (2021a). Nanocomposite of cosubstituted carbonated hydroxyapatite fabricated inside Poly (sodium 60 Reda S. Hassan et al. hyaluronate-acrylamide) hydrogel template prepared by gamma radiation for osteoblast cell regeneration. Radiation Physics and Chemistry, 183: 109408. Ghobashy, M. M.; El‐Damhougy, B. K.; El‐Wahab, H. A.; Madani, M.; Amin, M. A.; Naser, A. E. M.; Abdelhai, F.; Nady, N.; Meganid, A. S. and Alkhursani, S. A. (2021b). Controlling radiation degradation of a CMC solution to optimize the swelling of acrylic acid hydrogel as water and fertilizer carriers. Polymers for Advanced Technologies, 32(2): 514-524. Ghobashy, M. M.; Reheem, A. M. A. and Mazied, N. A. (2017). Ion etching induced surface patterns of blend polymer (poly ethylene glycol–poly methyl methacrylate) irradiated with gamma rays. International Polymer Processing, 32(2): 174-182. Hillary, V. E.; Ceasar, S. A. and Ignacimuthu, S. J. (2024). Efficacy of plant products in controlling disease vector mosquitoes, a review. Entomologia Experimentaliset Applicata,172 (3): 195-214. Ibrahim, S. S. (2020). Essential oil nanoformulations as a novel method for insect pest control in horticulture. Horticultural crops, 195-209. Kamaraj, C.; Satish Kumar, R. C.; Al-Ghanim, K. A.; Nicoletti, M.; Sathiyamoorthy, V.; Sarvesh, S.; ... and Govindarajan, M. (2023). Novel Essential Oils Blend as a Repellent and Toxic Agent against Disease-Transmitting Mosquitoes. Toxics, 11(6), 517. Lakshmayya, N.; Mishra, A. K.; Mohanta, Y. K.; Panda, J.; Naik, B.; Mishra, B.; Varma, R. S. B. and Biotechnology, A. (2023). Essential oils-based nano-emulsion system for food safety and preservation: Current status and future prospects. Biotechnology, 102897. Lammari, N.; Louaer, O.; Meniai, A. H. and Elaissari, A. J. (2020). Encapsulation of essential oils via nanoprecipitation process: Overview, progress, challenges and prospects. Pharmaceutics, 12(5): 431. Li, Y.; Wu, W.; Jian, R.; Ren, X.; Chen, X.; Hong, W. D.; Wu, M.; Cai, J.; Lao, C. and Xu, X. (2023). Larvicidal, acetylcholinesterase inhibitory activities of four essential oils and their constituents against Aedes albopictus, and nanoemulsion preparation. Journal of Pest Science, 96(3): 961-971. M Azmy, R.; E El Gohary, E. G.; M Mahmoud, D.; AM Salem, D.; A Abdou, M. and Salama, M. (2019a). Assessment of larvicidal activity of nanoemulsion from Citrus sinensis essential oil on Culex pipiens L.(Diptera: Culicidae). Egyptian Journal of Aquatic Biology Fisheries, 23(3): 61-67. Madani, M.; Hosny, S.; Alshangiti, D. M.; Nady, N.; Alkhursani, S. A.; Alkhaldi, H.; AlGahtany, S. A.; Ghobashy, M. M. and Gaber, G. A. (2022). Green synthesis of nanoparticles for varied applications: Green renewable resources and energyefficient synthetic routes. Nanotechnology Reviews, 11(1): 731-759. Madeira, S.; Bernardino, R.; Osório, H. C. and Boinas, F. J. (2024). Mosquito (Diptera: Culicidae) Fauna of a Zoological Park in an Urban Setting: Analysis of Culex pipiens sl and Their Biotypes. Egyptian Journal of Aquatic Biology and Fisheries, 15(1): 45. Manimaran, A.; Cruz, M.; Muthu, C.; Vincent, S. and Ignacimuthu (2012). Larvicidal and knockdown effects of some essential oils against Culex quinquefasciatus Say, Aedes aegypti (L.) and Anopheles stephensi (Liston). Advances in Bioscience Biotechnology,3(07): 855-862. Marouf, A. E. and Harras, F. (2022). Efficacy of Three Plant Oil Extracts and their NanoEmulsions on the Leaf Miner, Tuta absoluta Larvae (Meyrick) (Lepidoptera: Gelechiidae). Journal of Plant Protection Pathology, 13(9): 207-213. Efficacy of Nano-Encapsulated Mandarin Oil using and Gamma Irradiation against Culex pipiens Larvae 61 Matusiak, M.; Kadlubowski, S. and Rosiak, J. M. (2020). Nanogels synthesized by radiationinduced intramolecular crosslinking of water-soluble polymers. Radiation Physics and Chemistry, 169: 108099. Michaelakis, A.; Papachristos, D.; Kimbaris, A.; Koliopoulos, G.; Giatropoulos, A. and Polissiou, M. G. (2009). Citrus essential oils and four enantiomeric pinenes against Culex pipiens (Diptera: Culicidae). Parasitology research, 105: 769-773. Osanloo, M.; Firooziyan, S.; Abdollahi, A.; Hatami, S.; Nematollahi, A.; Elahi, N. and Zarenezhad, E. J. (2022).Nanoemulsion and nanogel containing Artemisia dracunculus essential oil; larvicidal effect and antibacterial activity." BMC Research Notes " 15(1): 276. Rosiak, J. M.; Ulanski, P.; Kujawa, P.; Janik, I.; Stasica, P.; Kadlubowski, S. and Kozicki, M. (2005). Radiation-Induced Transformations of Polymers in Aqueous Solutions. Eurasian Chemico-Technological Journal ,7: 225-250. Saad, M. M. (2013). Chemical composition and biological activities of four citrus essential oils. Journal of Plant Protection and Pathology, 4(9): 767-780. Sanei-Dehkordi, A.; Moemenbellah-Fard, M. D.; Saffari, M.; Zarenezhad, E. and Osanloo, M. (2022).Nanoliposomes containing limonene and limonene-rich essential oils as novel larvicides against malaria and filariasis mosquito vectors. BMC Complementary Medicine and Therapies, 22(1): 140. Sayed, W. A. A.; El-Bendary, H. and El-Helaly, A. (2020). Increasing the efficacy of the cotton leaf worm Spodoptera littoralis nucleopolyhedrosis virus using certain essential oils. Egyptian Journal of Biological Pest Control, 30(1): 1-7. Sharifiyan, M.; Mehrkhou, F. and Negahban, M. (2024). Lethal and sublethal effects of Menthapiperita L. and its nanoformulation form on the biological and population growth parameters of Trialeurodes vaporariorum (Westwood) under laboratory conditions. Journal of Entomological Society of Iran, 44.1 (2024): 20-30. Sogan, N.; Kala, S.; Kapoor, N.; Singh, H.; Verma, P.; Nautiyal, A. and Nagpal, B. (2023). Utilization and re-use of orange peel derived oil by formulating nanoemulsion for efficient vector control application. Waste Biomass Valorization, 1-13. Suwansirisilp, K.; Visetson, S.; Prabaripai, A.; Tanasinchayakul, S.; Grieco, J. P.; Bangs, M. J. and Chareonviriyaphap, T. (2013). Behavioral responses of Aedes aegypti and Culex quinquefasciatus (Diptera: Culicidae) to four essential oils in Thailand. Journal of pest science, 86: 309-320. Theochari, I.; Giatropoulos, A.; Papadimitriou, V.; Karras, V.; Balatsos, G.; Papachristos, D. and Michaelakis, A. (2020).Physicochemical characteristics of four limonenebased nanoemulsions and their larvicidal properties against two mosquito species, Aedes albopictus and Culex pipiens molestus. Insects, 11(11): 740. Umar, S.; Kokori, B.; Bashir, A. and Umaru, W. J. (2024). Larvicidal Efficacy of Citrus sinensi (Sweet Orange) Peel Extract against Anopheles Mosquito Larva from Nagazi and Adavi Local Government Area, Kogi State, Nigeria. Journal of Applied Sciences and Environmental Management, 28(1): 123-128. Villena, O. C.; McClure, K. M.; Camp, R. J.; LaPointe, D. A.; Atkinson, C. T.; Sofaer, H. R. and BerioFortini, L. (2024). Environmental and geographical factors influence the occurrence and abundance of the southern house mosquito, Culex quinquefasciatus, in Hawai ‘i. Scientific Reports, 14(1): 604. Vivekanandhan, P.; Panikar, S.; Sethuraman, V.; Usha-Raja-Nanthini, A. and Shivakumar, M. S.R. (2023). Toxic and synergetic effect of plant essential oils along with nanoemulsion for control of three mosquito species. Journal of Natural Pesticide Research, 100045.
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Dual roles of astrocytes in plasticity and reconstruction after traumatic brain injury
Cell communication and signaling
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© The Author(s). 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data. Dual roles of astrocytes in plasticity and reconstruction after traumatic brain injury nxiang Zhou1†, Anwen Shao2*†, Yihan Yao1, Sheng Tu3, Yongchuan Deng1 and Jianmin Zhang Abstract Traumatic brain injury (TBI) is one of the leading causes of fatality and disability worldwide. Despite its high prevalence, effective treatment strategies for TBI are limited. Traumatic brain injury induces structural and functional alterations of astrocytes, the most abundant cell type in the brain. As a way of coping with the trauma, astrocytes respond in diverse mechanisms that result in reactive astrogliosis. Astrocytes are involved in the physiopathologic mechanisms of TBI in an extensive and sophisticated manner. Notably, astrocytes have dual roles in TBI, and some astrocyte-derived factors have double and opposite properties. Thus, the suppression or promotion of reactive astrogliosis does not have a substantial curative effect. In contrast, selective stimulation of the beneficial astrocyte- derived molecules and simultaneous attenuation of the deleterious factors based on the spatiotemporal- environment can provide a promising astrocyte-targeting therapeutic strategy. In the current review, we describe for the first time the specific dual roles of astrocytes in neuronal plasticity and reconstruction, including neurogenesis, synaptogenesis, angiogenesis, repair of the blood-brain barrier, and glial scar formation after TBI. We have also classified astrocyte-derived factors depending on their neuroprotective and neurotoxic roles to design more appropriate targeted therapies. Keywords: Astrocyte, Traumatic brain injury, Reconstruction, Neurogenesis, Blood-brain barrier, Glial scar Keywords: Astrocyte, Traumatic brain injury, Reconstruction, Neurogenesis, Blood-brain barrier, G Zhou et al. Cell Communication and Signaling (2020) 18:62 https://doi.org/10.1186/s12964-020-00549-2 Zhou et al. Cell Communication and Signaling (2020) 18:62 https://doi.org/10.1186/s12964-020-00549-2 (2020) 18:62 Zhou et al. Cell Communication and Signaling https://doi.org/10.1186/s12964-020-00549-2 Background b of TBI made in the past few decades, few effective ther- apies for TBI are available [6–8]. Traumatic brain injury (TBI) refers to a sudden trauma caused by traffic accidents, wars, violence, terrorism, falls, and sporting activity [1]. TBI is currently the pri- mary cause of human death in young adults and one of the leading causes of fatality and disability across all ages worldwide, resulting in annual global economic losses of amounting to $US400 billion [2–4]. The high mortality and morbidity of TBI and the substantial economic burden affect the patients, families, and society, and have attracted public attention [5]. To date, more than 1000 clinical trials on TBI have been registered on clinicaltri als.gov. In spite of the immense efforts on the treatment One of the reasons for the failure is because most pre- vious studies have targeted neuronal cells, whereas emerging evidence shows that glial cells also play signifi- cant roles in the pathogenesis of TBI [9–11]. Astrocytes, a type of glial cells, are involved in the homeostasis and blood flow control of the central nervous system (CNS) [12]. TBI is known to induce astrocyte activation (react- ive astrogliosis), which is involved in tissue remodeling processes such as neurogenesis, synaptogenesis, repair of the blood-brain barrier (BBB), regulation of synaptic plasticity, and formation of glial scar and extracellular matrix (ECM), weighing a lot to the patient outcome [13–15]. However, reports on the effects of reactive astrogliosis are not consistent [10, 16–18]. The current review summarizes the existing knowledge on the role of astrocytes in TBI. We particularly elaborate on the * Correspondence: 21118116@zju.edu.cn; anwenshao@sina.com †Yunxiang Zhou and Anwen Shao contributed equally to this work. 2Department of Neurosurgery, The Second Affiliated Hospital, School of Medicine, Zhejiang University, Province, Zhejiang 310009, Hangzhou, China Full list of author information is available at the end of the article Zhou et al. Cell Communication and Signaling (2020) 18:62 Page 2 of 16 Page 2 of 16 Zhou et al. Cell Communication and Signaling Zhou et al. Cell Communication and Signaling (2020) 18:62 (2020) 18:62 peripheral cells, continuous activation of resident glial cells, and aggravated neuronal damage [28, 32]. Disrup- tion of the BBB integrity and the neurovascular unit (Fig. 1) can occur as a result of the initial injury or arise secondarily to the extensive neuroinflammation, astro- cytic dysfunction, and metabolic disturbances. These damages result in vascular leakage, brain edema, cerebral hemorrhage, and hypoxia [27, 29, 33–35]. Neuronal apoptosis also significantly contributes to secondary in- jury [36, 37]. In addition to apoptosis, necroptosis, a re- cently identified programmed cell death bearing resemblance to both apoptosis and necrosis, has also been demonstrated to play an indispensable role in sec- ondary neuronal cell death and neuroinflammation post- TBI [38, 39]. Mechanically, upon pathogenic stimuli fol- lowing TBI, TNF-α-induced receptor-interacting protein 1 activation contributes to the formation of the so-called necrosome, a complex necessary for necroptosis [40, 41]. And after necroptosis, inflammatory factors released from damaged cells flow into the extracellular space, boosting the neuroinflammation [41–43]. All these pri- mary or secondary pathologic mechanisms contribute to cell death, tissue loss, structural and metabolic abnor- malities, and an ultimate neurological dysfunction in the patients [15, 44]. And whether neural structure and function can be restored determines the final outcome of the TBI patients [36]. various roles of astrocytes and astrocytes-derived mole- cules in plasticity and reconstruction and explore the possibility of using astrocytes to optimize their thera- peutic benefit while attenuating the harmful effects of them. Overview of TBI and astrocyte Traumatic brain injury Traumatic brain injury is a prevalent disease, with a glo- bal annual burden of approximately $US400 billion [2, 3]. According to statistics by the World Health Organization, TBI affiliated mortalities and disability will surpass that of many diseases as from the year 2020 [19]. However, there are currently no effective therapies for TBI [6, 7]. And the main form of clinical treatment is re- stricted to surgical interventions and supportive manage- ments, including hyperbaric oxygen, task-oriented functional electrical stimulation, non-invasive brain stimulation, and behavioral therapy [6, 20]. One of the main challenges of treating TBI is the heterogeneity of its pathologic and pathogenic mechanisms. Conse- quently, an in-depth elucidation of the underlying patho- physiological mechanisms is required to provide new therapeutic targets. The pathophysiology of TBI Traumatic brain injury is characterized by instant damage to mechanical force and delayed damage to the subsequent pathophysiological processes [21]. The mechanical force directly leads to neuronal or diffuse axonal damage and vascular disruption, followed by sec- ondary injury mediated by extensive neuroinflammation, dysfunction of the BBB, oxidative stress, and apoptosis [22–26]. While the immediate primary injury is consid- ered untreatable, the delayed secondary injury gives a window for intervention and has, therefore, attracted a lot of attention [27]. Astrocyte reaction after TBI onset Astrocyte reaction after TBI onset Among brain resident glial cells such as astrocytes (astroglia), oligodendrocytes and microglia, astrocytes are the most abundant [45]. Astrocytes are characterized by the presence of glial fibrillary acidic protein (GFAP), a unique structural protein [45]. Under normal physio- logical conditions, astrocytes are involved in the homeostasis and blood flow control of the CNS [12]. As- trocytes structurally support neurons and separate the CNS from the meninges, blood vessels, and perivascular spaces by the creation of a functional barrier named glia limitans, which is formed via the interaction of astrocytic foot processes with the parenchymal basement mem- brane [46]. In addition, astrocytes provide functional support for neurons, including the recycling of the neurotransmitter glutamate, the most potent neurotoxin in the brain, via glutamate transporters (Fig. 2), the glutamate-glutamine shuttle system, and cystine–glu- tamate antiporter system [47–49]. Astrocytes play a role in the release of neurotrophic factors and gliotransmit- ters such as glutamate, ATP, γ-aminobutyrate (GABA), and D-serine [1, 15, 50]; the synthesis of glutamine, cholesterol, superoxide dismutases, glutathione, ascor- bate and thrombospondin (TSP)-1 and 2 [9, 51, 52]. As- trocytes are also involved in the regulation of energy metabolism by the conversion of glucose into lactate Following the initial injury, local environment changes and damaged cells release intracellular components, trig- gering the activation and recruitment of resident glial cells in the brain as well as the production of various cy- tokines, chemokines, and excitotoxins; then the periph- eral immune cells are recruited into the brain with further release of signaling factors to induce a robust sterile immune reaction [28–30]. A broad range of lit- erature data has reported the up-regulated expression of cytokines including interleukin (IL)-1β, tumor necrosis factor (TNF)-α, transforming growth factor-β (TGF-β), interferon γ (IFNγ), IL-6, IL-10 and IL-12 as well as the chemokines such as chemokine (C-C motif) ligand (CCL)2, CCL3, CCL4, chemokine (C-X-C motif) ligand (CXCL)1, CXCL2, CXXL4, CXCL8/IL-8 and CXCL10 in the early stages post-TBI, which boost the sterile inflam- mation [28, 31]. These lead to additional attraction of (2020) 18:62 Zhou et al. Cell Communication and Signaling (2020) 18:62 Page 3 of 16 Zhou et al. Cell Communication and Signaling Fig. 1 Schematic illustration of the neurovascular unit under normal physiological conditions and TBI pathological conditions. Astrocyte reaction after TBI onset The neurovascular unit encompasses neurons, glial cells (astrocytes, oligodendrocytes and microglia), vascular cells (pericytes, endothelial cells and vascular smooth muscle cells) and the basal lamina matrix. Following TBI, disruption of the neurovascular unit arises from and further aggravates the pathophysiological processes of TBI, which include BBB compromise, neuronal death, neuroglial dysfunction, neuroinflammation, and metabolic disturbances Fig. 1 Schematic illustration of the neurovascular unit under normal physiological conditions and TBI pathological conditions. The neurovascular Fig. 1 Schematic illustration of the neurovascular unit under normal physiological conditions and TBI pathological conditions. The neurovascular unit encompasses neurons, glial cells (astrocytes, oligodendrocytes and microglia), vascular cells (pericytes, endothelial cells and vascular smooth muscle cells) and the basal lamina matrix. Following TBI, disruption of the neurovascular unit arises from and further aggravates the pathophysiological processes of TBI, which include BBB compromise, neuronal death, neuroglial dysfunction, neuroinflammation, and metabolic disturbances [53–55] and the regulation of neuronal activation and water homeostasis through extracellular ion concentra- tions [56–59]. Given the multifunctional roles of astro- cytes in the CNS, they can affect neuronal activity, modulate plasticity, and participate in CNS regeneration after brain injury [60–64]. receptors related to inflammatory and immune pro- cesses, including Toll-like receptors, purinergic receptors, mannose receptors, scavenger receptors, nucleotide-binding oligomerization domain proteins, double-stranded RNA dependent protein kinase, and components of the complement system, through which they sense a wide range of endogenous and exogenous signals and respond dynamically to sterile injuries and infectious non-self [29, 65–67]. Therefore, danger signals post-TBI can trigger inflammasomes and innate immune response via their interaction with the receptors on the innate immune neuroglia. Mechanically, when the local Microglia are cells of myeloid origin and are consid- ered “the CNS professional macrophages”, which express a large repertoire of pattern-recognition receptors and are often the first cells responding to any inflammatory events [29, 65]. Importantly, more and more lines of evi- dence suggests that astrocytes also express a series of Zhou et al. Cell Communication and Signaling (2020) 18:62 Page 4 of 16 (2020) 18:62 Zhou et al. Cell Communication and Signaling Fig. 2 Schematic illustration of the glutamate-glutamine cycle in astrocytes. Astrocytes play a crucial role in the glutamate cycle of glutamate- glutamine. After the presynaptic membrane releases neurotransmitter glutamate, astrocytes can take in glutamate from the synaptic cleft through the glutamate receptor and synthesize glutamine with the catalysis of glutamine synthetase. Astrocyte reaction after TBI onset And the glutamine can cross the cell membrane into the cytoplasm of presynaptic membrane and be deaminated by glutaminase to produce glutamate Fig. 2 Schematic illustration of the glutamate-glutamine cycle in astrocytes. Astrocytes play a crucial role in the glutamate cycle of glutamate- glutamine. After the presynaptic membrane releases neurotransmitter glutamate, astrocytes can take in glutamate from the synaptic cleft through the glutamate receptor and synthesize glutamine with the catalysis of glutamine synthetase. And the glutamine can cross the cell membrane into the cytoplasm of presynaptic membrane and be deaminated by glutaminase to produce glutamate scar is considered the main hindrance to axonal regen- eration and recovery of neuronal connectivity [76, 77]. This shows one of the Janus-like effects of astrocytes. Controversy also remains as to whether reactive astro- gliosis is beneficial for the maintenance of BBB integrity after TBI [21, 78], since astrocytes can largely affect BBB integrity and water homeostasis [79] as detailed below: (1) the BBB is sheathed by perivascular astrocyte foot processes [80]; (2) the glymphatic system is formed by astrocytes [81]; (3) the perivascular aquaporin-4 (AQP4) is densely and exclusively expressed in astro- cyte end-feet [82]; (4) the permeability of the BBB can be affected by astrocyte-derived factors [78]; and (5) the concentration of extracellular ions is controlled by as- trocytes [9]. These “irrational” phenomena can be caused by an overreaction and dysfunction of reactive astrocytes after brain injury, or due to the release of neurodeleterious molecules [78]. Astrocytes, therefore, hold both neuroprotective and neurodeleterious effects following TBI, making it a double-edged sword for neu- rorestoration [83–85]. This also indicates that we can- not simply suppress or promote reactive astrogliosis, but should selectively stimulate the beneficial effects and ameliorate the deleterious ones in the astrocyte- targeting therapy [78]. biochemical environment changes following the onset of TBI, danger signals induce the structural and func- tional alterations of astrocytes, including hypertrophy and increased expression of the intermediate filaments (nestin, vimentin, and GFAP), resulting in astrocyte ac- tivation (reactive astrogliosis) [15, 68]. Other cells such as brain-resident microglia are also activated [31]. Both astrocytes and microglia react within 24 hours and peak around day 3-7, however, microglia rapidly decline to control levels approximately 21 days after the lesion while astrocytes exhibit a long-lasting proliferative re- sponse, at least, 28 days after TBI [69–71]. (2020) 18:62 Page 5 of 16 (2020) 18:62 Zhou et al. Cell Communication and Signaling Zhou et al. Cell Communication and Signaling (2020) 18:62 The neurogenesis-promoting effects of astrocytes g p g y Some studies suggested a beneficial effect of astrocytes in neurogenesis, both through the instruction of neur- onal fate commitment and the promotion of prolifera- tion of adult neural stem cells [88]. In addition, the neurogenesis-promoting effect of astrocytes has regional characteristics: hippocampal-derived astrocytes retain this potential, whereas astrocytes from the adult spinal cord do not [88]. Currently, some potential mechanisms concerning astrocytes-induced neurogenesis have been proposed. Astrocytes produce the neurotrophic and mitogenic protein S100β in vivo. Intraventricularly ad- ministration of S100β enhances neurogenesis within the hippocampus and improves cognitive function recovery following TBI. These improvements are mediated by the facilitation of neuronal differentiation, proliferation, and survival of hippocampal progenitor cells [89, 90]. Heme oxygenase induced by astrocytes after TBI catalyzes heme to carbon monoxide (CO), ferrous iron, and bili- verdin. Notably, low concentrations (lower than 250 ppm possibly) of CO exert promotive effects on neuro- genesis, as well as synaptic plasticity and angiogenesis [91]. Moreover, previous studies reported that mature astrocytes might regress to an immature phenotype and show stem cell characteristics [92]. Garber et al. revealed that astrocytes impaired neur- onal progenitor cell homeostasis via the up-regulated ex- pression of IL-1, thus hindering hippocampal neurogenesis in West Nile virus neuroinvasive disease, which could be reversed by IL-1R1 antagonist [83]. Up- regulated IL-1β is also found to aggravate excitotoxicity and seizures post-TBI, although the latter can develop independently from the neurotoxic effects [102, 103]. Interestingly, Barkho et al. suggested that IL-1β and IL-6 could promote neuronal differentiation of neural stem/ progenitor cells at relatively low concentrations and thus they proposed a concentration-depending effect of astrocyte-derived pro-inflammatory cytokines. They also indicated that three other astrocyte-derived molecules: insulin-like growth factor (IGF) binding protein 6 and decorin, which inhibit IGF and TGF-β respectively, and opioid receptor agonist enkephalin, could inhibit neuro- genesis [104]. The neurogenesis-suppressing effects of astrocytes The neurogenesis-suppressing effects of astrocytes However, under certain pathological conditions, such as severe TBI with devastating excitotoxicity and inflamma- tory response, the microenvironment of neurogenic niche may lose its homeostasis [21, 96]. Correspond- ingly, some studies proposed that knockout/knockdown of molecules produced by astrocytes or suppression of astrocyte-related signaling enhances neurogenesis. Mice devoid of GFAP and vimentin are found to be develop- mentally normal with increased hippocampal neurogen- esis and axonal regeneration post-TBI, despite that GFAP is essential for astrocyte activation and acute cel- lular stress handling [97–100]. This disparity may be due to the mechanism that differentiation of uncommitted neural progenitor cells is skewed towards neuronal lineage under the null of GFAP gene condition, and in- hibition of Sirt1 expression may strengthen this inclin- ation [101]. The effects and mechanisms of several GFAP suppressors have also been evaluated in experi- mental TBI [45]. Neurogenesis Emerging evidence has indicated that astrocytes play a vital role in neurogenesis, which is attributed to the regulation of the microenvironment of neurogenic niche [87, 88]. Astrocyte reaction after TBI onset The activa- tion and proliferation of glial cells, in turn, have utility in releasing signaling factors and triggering a robust sterile immune reaction that consists of brain-resident as well as peripherally recruited inflammatory cells. This reaction is initiated to exert neuroprotective ef- fects and promote wound healing, but may become maladaptive over time [29, 72]. As the inflammatory response progresses, local astro- glial progenitors around the injured tissue form the glial scar that isolates the damaged area, contains the spread of inflammatory cells, provides a favorable envir- onment for surviving neurons, and maintains the integ- rity of the BBB [46, 68, 73–75]. Nonetheless, the glial Page 5 of 16 Dual roles of astrocytes in plasticity and reconstruction after TBI composed of co-ultramicronized palmitoylethanolamide and luteolin was found to promote this process [94, 95]. Additionally, pituitary adenylate cyclase-activating pep- tide expressed by astrocytes plays a significant role in the support and survival of new neurons post-TBI [93]. Both the enhanced neurogenesis and long-lasting sur- vival of newborn neurons result in a better neurological recovery. As previously mentioned, all the primary and secondary pathologic mechanisms underlying TBI contribute to cell death, tissue loss, structural and metabolic abnormality, and ultimately lead to neurological dysfunction of TBI patients [15, 44]. And the ability to restore neural struc- ture and function determine the outcome of the patients [36, 86]. Thus, promoting the astrocytes/astrogliosis-in- duced neuroprotective effects/molecules or attenuating the neurodeleterious ones in terms of neuronal regeneration and tissue reconstruction may represent a promising therapeutic target for TBI. Below, we will de- scribe the astrocytes and a range of astrocyte-derived molecules, as well as their roles in neurogenesis, synap- togenesis, angiogenesis, blood-brain barrier repair, and glial scar formation after neurotrauma. The synaptogenesis-promoting effects of astrocytes The synaptogenesis-promoting effects of astrocytes Several studies have reported the beneficial role of astro- cytes in synaptogenesis, which is reflected in its involve- ment in synaptic formation, metabolic support, and neurotransmitter release [9, 110]. For instance, astro- cytes regulate the expression and localization of agrin, one of matrix metalloproteinase (MMP)-3 substrates, which induces reactive synaptogenesis and neurological recovery [111]. And astrocytes support ovarian steroids estradiol-enhanced neurite outgrowth, although this can be antagonized by activated microglial-induced proges- terone [112]. Remarkably, astrocytic signal transducer and activator of transcription-3 (STAT3) is capable to regulate the process formation and re-expression of TSP-1 of perineuronal astrocytes [18]. Furthermore, STAT3 supports neuronal integrity and mediates anti- inflammatory reactions [18, 113, 114]. The augmentation of STAT3 discloses a neuroprotective effect, whereas the conditional ablation of STAT3 has the opposite effect [113, 114]. Nevertheless, Christopherson et al. demon- strated that TSP-induced excitatory synapses are post- synaptically silent, which owes to the lack of functional α-amino-3-hydroxy-5-methyl-4-isoxazole propionic acid (AMPA) receptors [115]. Similarly, Kucukdereli et al. demonstrated that hevin, another matricellular protein secreted by astrocytes, could induce the same type of synapse as TSP [116]. On the contrary, the homologous sequence protein, secreted protein acidic and rich in cysteine (SPARC) inhibits hevin-induced synapse forma- tion [116–118]. Other astrocyte-derived molecules such as glypicans [119], TGF-β [120, 121], and brain-derived neurotrophic factor [122] can induce excitatory synapse formation, while γ-protocadherin can induce the forma- tion of either excitatory or inhibitory synapse via a contact-dependent mechanism [123]. Matrix metalloproteinases cleave ECM and are in- volved in the modulation of synaptogenesis. However, the definite role of MMPs in neurological recovery post- TBI remains elusive, since it depends on where and when it is activated [138]. After severe TBI, astrocytes induce the expression of MMP-3 in a higher and more persistent pattern, resulting in maladaptive synaptogene- sis and poor recovery of neural function, while MMP in- hibitor FN-439 is shown to attenuate the activity of MMP-3 and then facilitate functional recovery [139]. Moreover, persistent expression of another MMP, a dis- tintegrin and metalloproteinase-10 (ADAM-10), parallels the attenuation of the N-cadherin level, which is critical to synapse stability, and consequently contributing to re- duced functional recovery; whereas inhibition of MMP shifts the expression of ADAM-10 and N-cadherin to- wards an adaptive pattern and facilitates the synapse for- mation [17]. The synaptogenesis-promoting effects of astrocytes The synaptogenesis-suppressing effects of astrocytes Following the breakdown of the BBB, an influx of serum elements, and the inflammatory cytokines, including IL- 1, TGF-β trigger the formation of a glial scar to cope with injury. Nonetheless, the glial scar is considered the main hindrance to axonal regeneration and neuronal connectivity recovery, due to the production of growth- inhibitory components and the formation of physical and chemical barriers that hinder axon elongation [30, 76, 77, 124]. Among the inhibitory components, chon- droitin sulfate proteoglycans (CSPGs), one of the ECM Synaptogenesis Besides stimulating stem cell genesis, astrocytes also contribute to the prolonged survival of newborn neurons [93]. Neurotrophic factors secreted by astrocytes are closely involved in neuronal support and survival, and intraperitoneal administration of a formulation Astrocytes also play a crucial role in synaptic plasticity, remodeling, and regeneration post-TBI [105, 106]. As mentioned earlier, astrocytes are involved in the bio- chemical synthesis, metabolism, and secretion of many molecules. Some of these molecules, such as TSP-1 and Page 6 of 16 Page 6 of 16 Zhou et al. Cell Communication and Signaling (2020) 18:62 Zhou et al. Cell Communication and Signaling (2020) 18:62 Zhou et al. Cell Communication and Signaling (2020) 18:62 molecules produced by astrocytes, are of prime import- ance as they are predominantly responsible for the non- permissive characteristic of glial scar and have been extensively studied [125–128]. The major brain CSPGs include lecticans (neurocan, brevican, versican, and aggrecan), phosphacans, and transmembrane NG2; they surround and affect the perineuronal nets (PNNs), which are comprised of rich ECM and cell adhesion proteins and have been found to stabilize synapses [129, 130]. The class IIa/Leukocyte common antigen-related (LAR) family [131] and the NOGO receptors NgR1 and NgR3 [132] have been identified as CSPG receptors and convey subsequent axonal growth inhibition. However, heparan sulfate proteoglycans (HSPGs), another ligand for the LAR family receptors promotes axon extension [133]. This role of HSPGs may result from the switch of axonal endings between states of growth and inactivity via the oligomerization status of PTPσ (a member of the LAR family) [76]. Therefore, agents targeting these receptors or that mimic HSPG binding may mitigate the inhibitory environment of glial scar and augment neuronal regen- eration, thus suggesting multiple candidates of thera- peutic application for TBI [134, 135]. For instance, the hepatocyte growth factor, which exhibits pleiotropic functions in the CNS has been shown to suppress the expression of CSPGs after brain injury, as well as block the secretion of TGF-β1 and β2 and the subsequent in- duction of the glial scar [124]. Another ECM compo- nent, tenascin-C, was also shown to inhibit axon outgrowth and therefore represents a target for interven- tion [136, 137]. TSP-2, promote synaptogenesis, while molecules, in- cluding trophic factors and cholesterol, preserve syn- apse maturation and maintenance [106–108]. Reversely, these mechanisms (and others) are also po- tentially critical for eliciting pathological responses during and after TBI [87, 109]. Synaptic plasticity In addition to the number of synapses, synaptic plasticity is also necessary for learning and memory formation. Synaptic plasticity can be influenced by activation and Page 7 of 16 Page 7 of 16 Zhou et al. Cell Communication and Signaling (2020) 18:62 Zhou et al. Cell Communication and Signaling (2020) 18:62 (2020) 18:62 Zhou et al. Cell Communication and Signaling most of the ECM molecules produced by astrocytes elicit both restrictive and permissive effects on axonal sprout- ing post-lesion [79]. Indeed, studies demonstrated that ablation of astrogliosis in transgenic mice disrupted scar formation, which in turn exacerbated the spread and persistence of inflammation response, vasogenic edema, neuronal loss, demyelination, and functional recovery [159–162]. Furthermore, blocking scar formation in STAT3 deletion mice has similar effects of inducing ex- tensive lesions and increasing neuronal loss and loco- motor deficits after CNS injury, while enhancing scar formation in protein suppressor of cytokine signaling 3 deletion mice has the opposite effects [113, 114]. These findings strongly suggest that astrogliosis and glial scar formation may be neuroprotective against brain damage under particular circumstances, highlighting a dichotom- ous role again. localization of glutamate receptor, synaptic strength, intracellular calcium levels, neurotrophic factors, and cy- tokines following TBI [140–142]. Considering the in- volvement of astrocytes in the pathophysiological processes including supporting neuronal metabolism, se- creting different molecules that induce the formation of excitatory synaptic structure and function, and releasing gliotransmitters that affect the balance of neural network as well as synaptic potentiation or depression, astrocyte may be a promising target for modulating synaptic plas- ticity [87]. Following TBI, the general role of astrocytes in synaptic plasticity again remains obscure. For in- stance, the sphingosine 1-phosphate (S1P) receptor 1 an- tagonist siponimod preserves neural plasticity via attenuating activation of astrocytes, microglia, and other inflammatory cells [143]. On the contrary, minocycline influences neuronal plasticity and improves neurological recovery by increasing the astrogliosis following experi- mental stroke [144]. localization of glutamate receptor, synaptic strength, intracellular calcium levels, neurotrophic factors, and cy- tokines following TBI [140–142]. Considering the in- volvement of astrocytes in the pathophysiological processes including supporting neuronal metabolism, se- creting different molecules that induce the formation of excitatory synaptic structure and function, and releasing gliotransmitters that affect the balance of neural network as well as synaptic potentiation or depression, astrocyte may be a promising target for modulating synaptic plas- ticity [87]. Synaptic plasticity Following TBI, the general role of astrocytes in synaptic plasticity again remains obscure. For in- stance, the sphingosine 1-phosphate (S1P) receptor 1 an- tagonist siponimod preserves neural plasticity via attenuating activation of astrocytes, microglia, and other inflammatory cells [143]. On the contrary, minocycline influences neuronal plasticity and improves neurological recovery by increasing the astrogliosis following experi- mental stroke [144]. The synaptic stability-suppressing effects of astrocytes Astrocytes play a crucial role in regulating excitatory chemical transmission via glutamate transporters (Fig. 2), glutamate-glutamine shuttle system, and cystine–glu- tamate antiporter system. However, the impairment of astrocytic glutamate uptake and GABA release lead to glutamate excitotoxicity as well as ion and water imbal- ance post-TBI [1, 9]. Glutamate is the primary excitatory neurotransmitter and the most potent neurotoxin once concentrated in the extracellular space of CNS. Notably, the homeostasis of glutamate is closely associated with synaptic plasticity [47–49]. Ephrin-A3, a member of the ephrin family, is expressed in astrocytes and is involved in the regulation of glial glutamate transporters. Ephrin- A3 is required for maintenance of long-term potenti- ation via its interaction with the A-type Eph receptor, namely EphA4, and thus influences synaptic plasticity. Once Ephrin-A3 is over-expressed following TBI, it de- creases glutamate transporters and increases glutamate excitotoxicity, hence prolonging neuronal depolarization and focal dendritic swelling [163–165]. Therefore, inhib- ition of Ephrin-A3 represents a potential therapeutic strategy. Besides, the glutamate receptor antagonist MK- 801 has also been shown to enhance synaptic integrity and improve cognitive outcomes [138, 139]. The BBB integrity-promoting effects of astrocytes The BBB integrity-promoting effects of astrocytes The integrity of the BBB is determined by the endothe- lial tight junctions and the basal lamina. While endothe- lial tight junctions are formed by proteins such as claudin, occludin and zonula occluden (ZO), the basal lamina forms the basement membrane of ECM and in- cludes laminin, collagen, and fibronectin [177, 178]. Astrocyte-derived factors including angiopoietin-1 (ANG-1) [179–181], sonic hedgehog (SHH) [182–185], glial-derived neurotrophic factor (GDNF) [186–188], ret- inoic acid (RA) [189–191], and IGF-1 [192, 193] have been demonstrated to promote recovery of the BBB by protecting endothelial cells and/or enhancing tight junc- tion reassembly, via signaling mediated by their recep- tors, tie-2, patched-1, GDNF receptor alpha-1 and alpha-2, nuclear RA receptor, and IGF-1 receptor, re- spectively [78, 79] (Table. 1). Besides, the astrocyte- secreted apolipoprotein E (APOE) isoforms APOE2, APOE3, and APOE4, are also closely involved in the regulation of BBB integrity [194]. Notably, APOE exerts its regulation in an isoform-dependent manner [195]. Despite that APOE3 protects against BBB disruption via the suppression of a cyclophilin A (CypA)-nuclear factor-κB (NFκB)-MMP-9 pathway, APOE4 activates the The study by Prager et al. indicates that S1P binds to and activates five G protein-coupled receptors. Among these receptors, S1P receptor 1 (S1PR1) primarily pre- serves BBB integrity while the S1P receptor 2 damages integrity [222] and correspondingly, agents activating S1PR1 such as artesunate and isoflurane have been dem- onstrated to preserve the BBB integrity [223, 224]. How- ever, several antagonists which suppress the activation of S1PR1 have also been found to preserve the BBB integ- rity [143, 222]. Remarkably, the S1PR1 antagonist fingo- limod (FTY720) can also possibly induce S1P1 activation [225]. These observations suggest that S1PR1 plays a dual role in BBB permeability, depending on the ligand, which is in line with the assumption proposed by Schuh- mann et al. [226]. The synaptic stability-promoting effects of astrocytes Cell Communication and Signaling hyperphysiologic TNF-α in post-traumatic epileptogenesis has also been revealed [169, 170]. In addition to its influ- ences on glutamatergic transmission and synaptic plasti- city, TNF-α also has an important role in the initial activation of microglia and astrocytes and the disruption of the BBB; and the biologic TNF antagonist etanercept was shown to improve the outcomes of experimental TBI [171]. Furthermore, astrogliotic upregulation of enzyme adenosine kinase also contributes to epileptogenesis [172]. Notably, TBI is also an important risk factor for the devel- opment of many neurodegenerative diseases such as Alz- heimer’s disease, chronic traumatic encephalopathy, amyotrophic lateral sclerosis, and etcetera; the deposition and accumulation of amyloid-beta and tau are considered as part of the pathological mechanisms [173–176]. pathway and results in neuronal dysfunction and degen- eration [196]. Overall, APOE tends to maintain BBB in- tegrity and promote neurological recovery. While APOE-deficiency provokes BBB dysfunction, exogen- ously administered APOE or its mimetic peptides pre- serve BBB integrity in experimental studies [197–203]. The BBB integrity-suppressing effects of astrocytes Despite that some astrocyte-derived factors maintain the BBB function, some astrocyte-derived factors damage the BBB by inducing endothelial cell apoptosis or de- creasing the expression of endothelial tight junction- related proteins, which include vascular endothelial growth factor (VEGF) [204–207], glutamate [208–210], endothelins (ETs) [21, 211, 212], MMP [208, 213, 214], and nitric oxide (NO) [215, 216] (Table 1). As zinc- endopeptidases, MMPs can directly degrade endothelial tight junction-related proteins and ECM molecules, which promotes angiogenesis whereas simultaneously increases BBB permeability [78, 217, 218]. And it is through the signaling pathway activating or suppressing MMPs that many other factors such as APOE, NO, and ETs get to affect the BBB integrity [201, 212, 215]. Al- though both NO and glutamate can decrease endothelial tight junction-related proteins, NO may have inconsist- ent effects on apoptosis through different pathways [219]. Furthermore, glutamate also exacerbates vascular permeability via the activation of glutamate receptors [220], and cytokines such as TNF-α are strictly related to BBB disruption [171, 211, 221]. BBB repair Although TBI-induced astrogliosis and glial scar seem to promote the BBB repair [30], astrocytic dysfunction is one of the main pathological mechanisms giving rise to the BBB disruption post-TBI [27, 29, 33]. The dual roles of reactive astrogliosis owe to the distinct functions of various astrocyte-derived molecules in BBB integrity [78] (Table 1). Furthermore, these astrocyte-derived factors also regulate cell adhesion molecules on the endothelial cells, thereby controlling the leukocyte infiltration influx to the CNS, and participate in one or more pathophysio- logical processes including angiogenesis, neurogenesis, and neuroplasticity [78]. The synaptic stability-promoting effects of astrocytes The synaptic stability-promoting effects of astrocytes The previously mentioned neurogenesis-promoting CO also facilitates synaptic plasticity [91]. Besides, the synap- togenic factor TSP-1 can also suppress MMP-9-induced cleavage of extracellular matrix molecules and synaptic instability [145, 146]. AQP4, which is the main water channel of astrocytes and exclusively expressed on astro- cytes, plays a critical role in synaptic plasticity and mem- ory encoding [147]. Moreover, AQP4 is also highly correlated with the balance of water, the function of glymphatic pathway and the integrity of the BBB while the role of AQP4 may, however, depend on the stage of TBI progression [147, 148]. The study by Zhang et al. revealed that lack of AQP4 could lead to the accumula- tion and removal of excess water in the brain during acute and late stages of TBI, respectively [149], making AQP4-targeting therapy a great challenge. Although the glial scar is regarded as the main impedi- ment to axonal regeneration and neuronal connectivity recovery, it initially acts as a barrier isolating the dam- aged area, containing the spread of inflammatory cells, providing a favorable environment for surviving neurons and maintaining the BBB [30, 76, 150, 151]. Moreover, despite the detrimental roles mentioned above, CSPGs may help restrict inflammation by shifting monocytes to- wards resolving phenotype and enhancing the expression of anti-inflammatory cytokines, such as IL-10, as well as help stabilize the ionic microenvironment by limiting diffusion of cations, such as potassium, calcium, and so- dium [152, 153]. Furthermore, CSPGs [154, 155] and TNF-α [156–158] have been demonstrated to alter the level or mobility of AMPA receptors in a beneficial man- ner, which are critical in synaptic plasticity. Consistent with these findings, several studies have reported that Traumatic brain injury constitutes one of the most common causes of acquired epilepsy [166]. Epileptogen- esis can be induced by several pathological processes, in- cluding glial scar, ECM remodeling, axonal plasticity alteration, excitation/inhibition imbalance, cell death, and neuronal heterotopia [167]. Once the structural in- tegrity of PNNs is compromised by astrocyte-derived ECM molecules, dysfunctional PNNs around the fast- spiking inhibitory interneurons might underlie excita- tion/inhibition imbalance and lead to the development of post-traumatic epilepsies [168]. The involvement of Zhou et al. Cell Communication and Signaling (2020) 18:62 Page 8 of 16 Page 8 of 16 Zhou et al. Cell Communication and Signaling (2020) 18:62 Zhou et al. Cell Communication and Signaling (2020) 18:62 Zhou et al. Usage of astrocyte and astrocyte-derived molecules as therapeutic targets As a result, all of the described neuroprotective and neu- rodeleterious molecules, as well as their upstream and downstream factors, represent potential therapeutic tar- gets (Fig. 3 and Table 1). However, both astrocytes and astrocyte-derived molecules can only act as targets for particular subtypes, specific damage regions, and certain Page 9 of 16 Zhou et al. Usage of astrocyte and astrocyte-derived molecules as therapeutic targets Cell Communication and Signaling (2020) 18:62 Table 1 Dual roles of astrocyte-derived factors in the BBB integrity after TBI (Continued) Astrocyte- derived factors Characters Receptors Role in BBB post-TBI Mechanisms Related agents Other functions References ETs Potent endogenous vasoconstrictors Endothelin receptor type A/B Damage Exacerbate BBB inflammation; enhance MMPs activation; degrade TJ-related proteins S-0139 (selective ETA receptor antagonist); BQ788 (selective ETB receptor antagonist) Induce expression of cell adhension molecules; regulate endothelial function 21, 211, 212 S1P A biologically active lipid S1PR 1-5 Dual Regulate VEGF activation and TJ-related proteins Siponimod, fingolimod, TASP0277308 (antagonists of S1PR 1); artesunate, isoflurane (agonists of S1PR 1)✝ Regulate synaptic plasticity 143, 222- 226 *APOE exerts its regulation of BBB integrity in an isoform-dependent manner, APOE4 activates the activity of MMP-9 and accelerates the BBB permeability195, 196 **Some studies suggested that blockade of AMPA receptor did not promote glutamate-mediated BBB breakdown210 ✝Both the antagonists which suppress the activation of S1PR 1 and agonists which activate S1PR 1 have been demonstrated to preserve the BBB integrity143, 222-226 Abbreviations: ANG-1 angiopoietin-1, TJ tight junction, VEGF vascular endothelial growth factor, BBB blood-brain barrier, TBI traumatic brain injury, SHH sonic hedgehog, GDNF glial-derived neurotrophic factor, RA retinoic acid, IGF-1 insulin-like growth factor-1, APOE apolipoprotein E, MMP matrix metalloproteinases, ECM extracellular matrix, NO nitric oxide, cGMP cyclic guanosine, NMDA N-methyl-D-aspartate, ETs endothelins, S1P sphingosine 1-phosphate, AMPA α-amino-3-hydroxy- 5-methyl-4-isoxazolepropionic acid, S1PR S1P receptor g y Abbreviations: ANG-1 angiopoietin-1, TJ tight junction, VEGF vascular endothelial growth factor, BBB blood-brain barrier, TBI traumatic brain injury, SHH sonic hedgehog, GDNF glial-derived neurotrophic factor, RA retinoic acid, IGF-1 insulin-like growth factor-1, APOE apolipoprotein E, MMP matrix metalloproteinases, ECM extracellular matrix, NO nitric oxide, cGMP cyclic guanosine, NMDA N-methyl-D-aspartate, ETs endothelins, S1P sphingosine 1-phosphate, AMPA α-amino-3-hydroxy- 5-methyl-4-isoxazolepropionic acid, S1PR S1P receptor stages of TBI. Therefore, therapeutic strategies must focus on the enhancement of neuroprotective effects and blockage of the neurodeleterious effects of the different factors under specific conditions. inflammatory responses such as minocycline and etaner- cept have also been proposed as potential candidates for neuroprotection [144, 171]. We have previously reviewed the advance of stem cell treatment for TBI, which has not reached a general suc- cess in clinic application [86]. Given the vital roles of astrocyte-secreted factors in the neurogenesis and neural differentiation, a combination of stem cell treatment and astrocytic functions may present a novel therapeutic strategy. Usage of astrocyte and astrocyte-derived molecules as therapeutic targets Besides, non-coding RNAs also hold thera- peutic potential as astrocytes express various non-coding RNAs, which in turn control astrocytic functions [236– 238]. And hypertonic saline has been found to elicit neu- roprotection by regulating the expression of non-coding RNAs [239]. Besides targeting astrocyte-derived molecules, stimu- lating the function of astrocyte-related receptors is also promising for the restoration of neuronal plasticity and reconstruction. Some astrocyte-derived molecules such as S1P and ETs also act as ligands of astrocytic recep- tors, and the probable therapeutic drugs are shown in the Table 1. Other receptors such as Toll-like receptors [127], purinergic receptor [227], glutamate receptor [228], hormone receptor [10, 229], and cannabinoid re- ceptor [230] have also attracted widespread attention. Although we previously mentioned that MK-801, one of the glutamate receptor antagonists, had been shown to enhance synaptic integrity and improve cognitive out- come in the experimental study; but regrettably, clinical trials concerning the glutamate receptor antagonists have been widely carried out but failed to provide a sta- tistically significant benefit for TBI patients [231]. Ac- cording to Ikonomidou et al., the failure could be attributed to the attenuation of synaptic transmission, which impedes neuronal survival [228]. Usage of astrocyte and astrocyte-derived molecules as therapeutic targets Cell Communication and Signaling (2020) 18:62 Table 1 Dual roles of astrocyte-derived factors in the BBB integrity after TBI Astrocyte- derived factors Characters Receptors Role in BBB post-TBI Mechanisms Related agents Other functions References ANG-1 Glycoprotein Tie-2 Protect Promote endothelial cells, vascular remodeling, and stability; increase TJ- related proteins Exogenous ANG-1 or ANG- 1 mimetic peptides Promote angiogenesis; suppress VEGF-induce ex- pression of cell adhesion molecules and leukocyte infiltration 179-181 SHH Glycoprotein Patched-1 Protect Attenuate endothelial cells apoptosis; increase TJ- related proteins Exogenous SHH Promote angiogenesis; promote normal pattern formation and cellular differentiation in the developing CNS; suppress cell adhesion molecules expression and leukocyte infiltration 182-185 GDNF Neurotrophic factor GDNF receptor α- 1 and -2 Protect Increase TJ-related proteins Exogenous GDNF Promote the normal postnatal development of BBB, neuronal survival and angiogenesis; axon guidance and synapse formation; control endothelial functions; 186-188 RA Active metabolite synthesized from retinol by retinaldehyde dehydrogenase Nuclear RA receptors Protect Increase TJ-related pro- teins and vascular endo- thelial cadherin Exogenous RA Promote growth and development in the CNS; regulate synaptic plasticity; suppress the expression of cell adhesion molecules 189-191 IGF-1 A member of insulin gene family IGF-1 receptors Protect Attenuate endothelial cells apoptosis Exogenous IGF-1 Promote neurogenesis; reduce cell death; support injury repair; regulate synaptic neuroplasticity 78, 192, 193 APOE A member of the apolipoprotein family \ Protect* Suppress the activity of MMP-9; increase TJ-related proteins APOE-mimetic peptide COG1410 Support lipid transport and injury repair 194-203 VEGF An angiogenetic factor VEGFR-1 and VEGFR-2 Damage Decrease TJ-related proteins SU5416 (VEGFR-2 inhibitor); cavtratin (a selective inhibitor of VEGF- A) Promote endothelial proliferation and differentiation for angiogenesis; induce cell adhesion molecules expression and leukocyte infiltration 204-207 MMP Zinc- endopeptidases \ Damage Enhance endothelial cell apoptosis; degrade TJ- related proteins and ECM molecules Ro32–3555 (a broad spectrum MMP inhibitor) Promote angiogenesis; regulate expression of cell adhesion molecules and subsequent leukocyte infiltration 208, 213, 214 NO A potent vasodilator synthesized from L-arginine by NO synthase \ Damage Enhance MMPs activation; decrease TJ-related pro- teins; induce apoptosis through cGMP monophosphate- independent pathways, suppress apoptosis through cGMP pathway Nomega-Nitro-L-arginine methyl ester (a non- specific NOS inhibitor) Regulate blood flow for neuronal activity; exacerbate inflammatory reaction 78, 215, 216 Glutamate A major excitatory transmitter and NMDA receptor and the AMPA receptor Damage Induce excessive vascular permeability via activation of NMDA receptors; decrease TJ-related proteins MK-801 (non-competitive NMDA receptor antagonist); CGS-19755 (competitive NMDA recep- tor antagonist); NBQX, DNQX (competitive AMPA Regulate synaptic plasticity and formation; induce vasodilatation; regulate neuronal survival 208-210 Page 10 of 16 Zhou et al. Conclusion and perspectives In this article, we describe for the first time the detailed dual roles of astrocytes in the field of neuronal plasticity and reconstruction including neurogenesis, synaptogene- sis, angiogenesis, BBB repair, glial scar formation after TBI, and attempt to classify astrocyte-derived factors by neuroprotection and neurotoxicity to make the targeted therapy more relevant and meaningful. However, not only astrocytes have a dual role, but some factors de- rived from astrocytes also have double-sided properties, which may due to the distinct microenvironment and molecular mechanisms underlying the different subtypes, different damage zone, and different stages of neurotrauma. For example, mild TBI and severe TBI will induce different physiological and pathological mecha- nisms as well as different astrocytic reaction; hippocampus-derived astrocytes and spinal cord-derived astrocytes boost different effects on neurogenesis; the acute and the late stages post-TBI elicit different roles of AQP4. Therefore, simply suppressing or promoting Modulating the maladaptive microenvironment post-TBI is also a considerable therapeutic strategy [140–142]. Rele- vantly, agents for reducing the glutamate excitotoxicity by enhancing glutamate transporters such as parawexin 1 and certain β-lactam antibiotics could be of therapeutic benefit [232, 233]. Other potential therapeutic mediators include agents for the restoration of ionic and water balance by tar- geting Na+/H+ transporters, Na+/K+/2Cl−cotransporters, or Na+/Ca2+ exchangers such as fluorenyl drugs [234, 235] and agents that promote neuronal survival and function such as recombinant neurotrophins or peptidomimetics [9]. Agents that alter the lesion environment by modulating Zhou et al. Cell Communication and Signaling (2020) 18:62 Page 11 of 16 Zhou et al. Cell Communication and Signaling (2020) 18:62 Page 11 of 16 (2020) 18:62 Zhou et al. Cell Communication and Signaling Fig. 3 Potential therapeutic targets regarding astrocyte-derived molecules following TBI. Following TBI, damaged cells release danger signals. And stressed intermediate filaments networks within astrocytes activate ion influx through the mechanosensitive ion channel, resulting in the further release of danger signals. These signals serve to activate neuroglia and induce a robust sterile immune reaction and other secondary TBI pathogenesis. Reactive astrocytes secrete a wide range of factors that affect neurogenesis, synaptogenesis and synaptic stability, and angiogenesis, which may represent the therapeutic targets. Modulating the maladaptive microenvironment caused by neuroinflammation, excitotoxicity and oxidative stress post-TBI is also a considerable therapeutic strategy. Author details 1 23. Hayes JP, et al. Mild traumatic brain injury is associated with reduced cortical thickness in those at risk for Alzheimer's disease. Brain. 2017;140(3):813–25. 1Department of Surgical Oncology, The Second Affiliated Hospital, Zhejiang University School of Medicine, No. 88, Jiefang Road, Zhejiang 310009, Hangzhou, China. 2Department of Neurosurgery, The Second Affiliated Hospital, School of Medicine, Zhejiang University, Province, Zhejiang 310009, Hangzhou, China. 3State Key Laboratory for Diagnosis and Treatment of Infectious Diseases, Collaborative Innovation Center for Diagnosis and Treatment of Infectious Diseases, The First Affiliated Hospital, College of Medicine, Zhejiang University, Zhejiang, Hangzhou, China. 24. Lin C, et al. Melatonin attenuates traumatic brain injury-induced inflammation: a possible role for mitophagy. J Pineal Res. 2016;61(2): 177–86. 24. Lin C, et al. Melatonin attenuates traumatic brain injury-induced inflammation: a possible role for mitophagy. J Pineal Res. 2016;61(2): 177–86. 25. Menge T, et al. Mesenchymal stem cells regulate blood-brain barrier integrity through TIMP3 release after traumatic brain injury. Sci Transl Med. 2012;4(161):161ra150. 26. Wu H, et al. Melatonin attenuates neuronal apoptosis through up-regulation of K(+) -Cl(-) cotransporter KCC2 expression following traumatic brain injury in rats. J Pineal Res. 2016;61(2):241–50. Received: 19 December 2019 Accepted: 6 March 2020 27. Shlosberg D, et al. Blood-brain barrier breakdown as a therapeutic target in traumatic brain injury. Nat Rev Neurol. 2010;6(7):393–403. 27. Shlosberg D, et al. Blood-brain barrier breakdown as a the traumatic brain injury. Nat Rev Neurol. 2010;6(7):393–403. Abbreviations 6. Dang B, et al. Rehabilitation Treatment and Progress of T ADAM-10: a distintegrin and metalloproteinase-10; AMPA: α-amino-3- hydroxy-5-methyl-4-isoxazolepropionic acid; ANG-1: Angiopoietin-1; APOE: Apolipoprotein E; AQP4: Aquaporin-4; BBB: Blood-brain barrier; CCL: Chemokine (C-C motif) ligand; cGMP: Cyclic guanosine; CNS: Central nervous system; CO: Carbon monoxide; CSPGs: Chondroitin sulfate proteoglycans; CXCL: Chemokine (C-X-C motif) ligand; CypA: Cyclophilin A; ECM: Extracellular matrix; ETs: Endothelins; GDNF: Glial-derived neurotrophic factor; GFAP: Glial fibrillary acidic protein; HSPGs: Heparan sulfate proteoglycans; IFN: Interferon; IGF-1: Insulin-like growth factor-1; IL: Interleukin; MMP: Matrix metalloprotein; NFκB: Nuclear factor-κB; NMDA: N-methyl-D-aspartate; NO: Nitric oxide; PNNs: Perineuronal nets; RA: Retinoic acid; S1P: Sphingosine 1-phosphate; S1PR: S1P receptor; SHH: Sonic hedgehog; SPARC: Secreted protein acidic and rich in cysteine; STAT3: Signal transducer and activator of transcription-3; TBI: Traumatic brain injury; TGF-β: Transforming growth factor-β; TJ: Tight junction; TNF: Tumor necrosis factor; TSP: Thrombospondin; VEGF: Vascular endothelial growth factor; ZO: Zonula occluden Injury Dysfunction. Neural Plast. 2017;2017:1582182. 7. Roozenbeek B, Maas AI, Menon DK. Changing patterns in the epidemiology of traumatic brain injury. Nat Rev Neurol. 2013;9(4):231–6. of traumatic brain injury. Nat Rev Neurol. 2013;9(4):231–6. 8. Khaksari M, Soltani Z, Shahrokhi N. Effects of Female Sex Steroids Administration on Pathophysiologic Mechanisms in Traumatic Brain Injury. Transl Stroke Res. 2018;9(4):393–416. 9. Colangelo AM, et al. Targeting reactive astrogliosis by novel biotechnological strategies. Biotechnol Adv. 2012;30(1):261–71 10. Arbo BD, Bennetti F, Ribeiro MF. Astrocytes as a target for neuroprotection: Modulation by progesterone and dehydroepiandrosterone. Prog Neurobiol. 2016;144:27–47. 11. Shields J, et al. Therapeutic targeting of astrocytes after traumatic brain injury. Transl Stroke Res. 2011;2(4):633–42. 11. Shields J, et al. Therapeutic targeting of astrocytes after traumatic brain injury. Transl Stroke Res. 2011;2(4):633–42. y 12. Sofroniew MV, Vinters HV. Astrocytes: biology and pathology. Acta Neuropathol. 2010;119(1):7–35. 12. Sofroniew MV, Vinters HV. Astrocytes: biology and pathology. Acta Neuropathol. 2010;119(1):7–35. 13. Pu H, et al. Repetitive and Prolonged Omega-3 Fatty Acid Treatment After Traumatic Brain Injury Enhances Long-Term Tissue Restoration and Cognitive Recovery. Cell Transplant. 2017;26(4):555–69. Conclusion and perspectives Cell Communication and Signaling (2020) 18:62 (2020) 18:62 6. Dang B, et al. Rehabilitation Treatment and Progres Injury Dysfunction. Neural Plast. 2017;2017:1582182. 6. Dang B, et al. Rehabilitation Treatment and Progress of Traumatic Brain Authors' contributions 14. Wu Y, et al. Implantation of Brain-Derived Extracellular Matrix Enhances Neurological Recovery after Traumatic Brain Injury. Cell Transplant. 2017; 26(7):1224–34. All the authors participated in analyzing and discussing the literature, commenting on and approving the manuscript. AWS supervised the research, led the discussion, wrote and revised the manuscript. All authors read and approved the final manuscript. 15. Perez EJ, et al. Enhanced astrocytic d-serine underlies synaptic damage after traumatic brain injury. J Clin Invest. 2017;127(8):3114–25. 15. Perez EJ, et al. Enhanced astrocytic d-serine underlies synaptic damage after traumatic brain injury. J Clin Invest. 2017;127(8):3114–25. 16. Furman JL, et al. Blockade of Astrocytic Calcineurin/NFAT Signaling Helps to Normalize Hippocampal Synaptic Function and Plasticity in a Rat Model of Traumatic Brain Injury. J Neurosci. 2016;36(5):1502–15. Consent for publication l bl 21. Hostenbach S, et al. The pathophysiological role of astrocytic endothelin-1. Prog Neurobiol. 2016;144:88–102. Conclusion and perspectives ANG-1, angiopoietin-1; CCL, chemokine (C-C motif) ligand; CXCL, chemokine (C-X-C motif) ligand; GFAP, glial fibrillary acidic protein; HMGB1, high mobility group protein B1; HSP, heat shock proteins; HSPGs, heparan sulfate proteoglycans; IFN, interferon; IGFBP-6, insulin-like growth factor binding protein 6; IL, interleukin; MMP, matrix metalloprotein; PACAP, pituitary adenylate cyclase-activating peptide; SHH, sonic hedgehog; SPARC, secreted protein acidic and rich in cysteine; STAT3, signal transducer and activator of transcription-3; TBI, traumatic brain injury; TGF-β, transforming growth factor-β; TNF, tumor necrosis factor; TSP, thrombospondin; VEGF, vascular endothelial growth factor Fig. 3 Potential therapeutic targets regarding astrocyte-derived molecules following TBI. Following TBI, damaged cells release danger signals. And stressed intermediate filaments networks within astrocytes activate ion influx through the mechanosensitive ion channel, resulting in the further release of danger signals. These signals serve to activate neuroglia and induce a robust sterile immune reaction and other secondary TBI pathogenesis. Reactive astrocytes secrete a wide range of factors that affect neurogenesis, synaptogenesis and synaptic stability, and angiogenesis, which may represent the therapeutic targets. Modulating the maladaptive microenvironment caused by neuroinflammation, excitotoxicity and oxidative stress post-TBI is also a considerable therapeutic strategy. ANG-1, angiopoietin-1; CCL, chemokine (C-C motif) ligand; CXCL, chemokine (C-X-C motif) ligand; GFAP, glial fibrillary acidic protein; HMGB1, high mobility group protein B1; HSP, heat shock proteins; HSPGs, heparan sulfate proteoglycans; IFN, interferon; IGFBP-6, insulin-like growth factor binding protein 6; IL, interleukin; MMP, matrix metalloprotein; PACAP, pituitary adenylate cyclase-activating peptide; SHH, sonic hedgehog; SPARC, secreted protein acidic and rich in cysteine; STAT3, signal transducer and activator of transcription-3; TBI, traumatic brain injury; TGF-β, transforming growth factor-β; TNF, tumor necrosis factor; TSP, thrombospondin; VEGF, vascular endothelial growth factor for the pharmacotherapy of TBI, but related clinical tri- als are rare and the existing ones have failed to show promise for long-term prognosis. Future research should focus more strictly on distinguishing the various func- tions of astrocyte-derived molecules in a clear subtype, region, and stage of TBI. In addition, more clinical trials concerning astrocyte-targeting therapy are warranted. reactive astrogliosis does not have a satisfying curative effect, whereas selectively stimulating the beneficial astrocyte-derived molecules while attenuating the dele- terious ones based on the spatiotemporal-environment represents a promising astrocyte-targeting therapeutic strategy. As far, there are a number of related animal ex- periments that provide some novel therapeutic targets Page 12 of 16 Page 12 of 16 Page 12 of 16 Zhou et al. Ethics approval and consent to participate Not applicable. Ethics approval and consent to participate Not applicable. 20. Lee SW, et al. The role of microglial inflammasome activation in pyroptotic cell death following penetrating traumatic brain injury. J Neuroinflammation. 2019;16(1):27. Availability of data and materials Not applicable. 19. de la Tremblaye PB, et al. Elucidating opportunities and pitfalls in the treatment of experimental traumatic brain injury to optimize and facilitate clinical translation. Neurosci Biobehav Rev. 2018;85:160–75. 19. de la Tremblaye PB, et al. Elucidating opportunities and pitfalls in the treatment of experimental traumatic brain injury to optimize and facilitate clinical translation. Neurosci Biobehav Rev. 2018;85:160–75. Competing interests 22. Ichkova A, et al. Vascular impairment as a pathological mechanism underlying long-lasting cognitive dysfunction after pediatric traumatic brain injury. Neurochem Int. 2017;111:93–102. The authors declare that they have no competing interests. Funding Th k This work was funded by China Postdoctoral Science Foundation (2017M612010) and National Natural Science Foundation of China (81701144). 17. Warren KM, Reeves TM, Phillips LL. MT5-MMP, ADAM-10, and N-cadherin act in concert to facilitate synapse reorganization after traumatic brain injury. J Neurotrauma. 2012;29(10):1922–40. 18. Tyzack GE, et al. Astrocyte response to motor neuron injury promotes structural synaptic plasticity via STAT3-regulated TSP-1 expression. Nat Commun. 2014;5:4294. References 2006;209(Pt 12):2304–11. 87. Papa M, et al. Astrocyte-neuron interplay in maladaptive plasticity. Neurosci Biobehav Rev. 2014;42:35–54. 56. Jayakumar AR, Norenberg MD. The Na–K–Cl Co-transporter in astrocyte swelling. Metab Brain Dis. 2010;25(1):31–8. 88. Song H, Stevens CF, Gage FH. Astroglia induce neurogenesis from adult neural stem cells. Nature. 2002;417(6884):39–44. 57. LANG F, et al. Functional Significance of Cell Volume Regulat 57. LANG F, et al. Functional Significance of Cell Volume Regulatory Mechanisms. Physiol Rev. 1998;78(1):247–306. 89. Kleindienst A, et al. Enhanced hippocampal neurogenesis by intraventricular S100B infusion is associated with improved cognitive recovery after traumatic brain injury. J Neurotrauma. 2005;22(6):645–55. y 58. Walz W. Role of astrocytes in the clearance of excess extracellular potassium. Neurochem Int. 2000;36(4-5):291–300. traumatic brain injury. J Neurotrauma. 2005;22(6):645–55. potassium. Neurochem Int. 2000;36(4-5):291–300. 59. Kofuji P, Newman EA. Potassium buffering in the central nervous system. Neuroscience. 2004;129(4):1045–56. 90. Hinkle DA, et al. GFAP and S100beta expression in the cortex and hippocampus in response to mild cortical contusion. J Neurotrauma. 1997; 14(10):729–38. 60. Zhai X, et al. Astrocytes Regulate Angiogenesis Through the Jagged1- Mediated Notch1 Pathway After Status Epilepticus. Mol Neurobiol. 2016; 53(9):5893–901. 91. Choi YK. Role of Carbon Monoxide in Neurovascular Repair Processing. Biomol Ther (Seoul). 2018;26(2):93–100. 92. Seri B, et al. Astrocytes give rise to new neurons i hippocampus. J Neurosci. 2001;21(18):7153–60. 61. Baldwin KT, Eroglu C. Molecular mechanisms of astrocyte-ind 92. Seri B, et al. Astrocytes give rise to new neurons in the adult mammalian hippocampus. J Neurosci. 2001;21(18):7153–60. 61. Baldwin KT, Eroglu C. Molecular mechanisms of astrocyte-induced synaptogenesis. Curr Opin Neurobiol. 2017;45:113–20. synaptogenesis. Curr Opin Neurobiol. 2017;45:113–20. 62. Muthukumar AK, Stork T, Freeman MR. Activity-dependent regulation of astrocyte GAT levels during synaptogenesis. Nat Neurosci. 2014;17(10):1340–50 93. van Landeghem FK, et al. Cellular localization of pituitary adenylate cyclase- activating peptide (PACAP) following traumatic brain injury in humans. Acta Neuropathol. 2007;113(6):683–93. 63. Stogsdill JA, et al. Astrocytic neuroligins control astrocyte morphogenesis and synaptogenesis. Nature. 2017;551(7679):192–7. 94. Crupi R, et al. Co-Ultramicronized Palmitoylethanolamide/Luteolin Promotes Neuronal Regeneration after Spinal Cord Injury. Front Pharmacol. 2016;7(47). 64. Robinson C, Apgar C, Shapiro LA. Astrocyte Hypertrophy Contributes to Aberrant Neurogenesis after Traumatic Brain Injury. Neural Plast. 2016;2016:1347987. 95. Gao X, Chen J. Conditional knockout of brain-derived neurotrophic factor in the hippocampus increases death of adult-born immature neurons following traumatic brain injury. J Neurotrauma. 2009;26(8):1325–35. 65. Farina C, Aloisi F, Meinl E. Astrocytes are active players in cerebral innate immunity. Trends Immunol. References traumatic brain injury. Nat Rev Neurol. 2010;6(7):393–403. 28. Gyoneva S, Ransohoff RM. Inflammatory reaction after traumatic brain injury: therapeutic potential of targeting cell-cell communication by chemokines. Trends Pharmacol Sci. 2015;36(7):471–80. 1. Kardos J, et al. The nature of early astroglial protection-Fast activation and signaling. Prog Neurobiol. 2017;153:86–99. 1. Kardos J, et al. The nature of early astroglial protection-Fast activation and signaling. Prog Neurobiol. 2017;153:86–99. 2. GBD 2016 Traumatic Brain Injury and Spinal Cord Injury Collaborators. Global, regional, and national burden of traumatic brain injury and spinal cord injury, 1990-2016: a systematic analysis for the Global Burden of Disease Study 2016. Lancet Neurol. 2019;18(1):56–87. 29. Corps KN, Roth TL, McGavern DB. Inflammation and neuroprotection in traumatic brain injury. JAMA Neurol. 2015;72(3):355–62. 30. Sharma K, Zhang G, Li S. In: So K-F, Xu X-M, editors. Chapter 11 - Astrogliosis and Axonal Regeneration. Neural Regeneration. Oxford: Academic Press; 2015. p. 181–96. 3. Maas AIR, et al. Traumatic brain injury: integrated approaches to improve prevention, clinical care, and research. Lancet Neurol. 2017;16(12):987–1048. 31. Jassam YN, et al. Neuroimmunology of Traumatic Brain Injury: Time for a Paradigm Shift. Neuron. 2017;95(6):1246–65. 4. An C, et al. Severity-Dependent Long-Term Spatial Learning-Memory Impairment in a Mouse Model of Traumatic Brain Injury. Transl Stroke Res. 2016;7(6):512–20. g 32. Kumar A, et al. Microglial-derived microparticles mediate neuroinflammation after traumatic brain injury. J Neuroinflammation. 2017;14(1):47. after traumatic brain injury. J Neuroinflammation. 2017;14(1):47 5. Cooper DJ, et al. Effect of Early Sustained Prophylactic Hypothermia on Neurologic Outcomes Among Patients With Severe Traumatic Brain Injury: The POLAR Randomized Clinical Trial. JAMA. 2018;320(21):2211–20. 33. Johnson VE, et al. Mechanical disruption of the blood-brain barrier following experimental concussion. Acta Neuropathol. 2018;135(5):711–26. Page 13 of 16 Page 13 of 16 Zhou et al. Cell Communication and Signaling (2020) 18:62 (2020) 18:62 Zhou et al. Cell Communication and Signaling (2020) 18:62 34. Badaut J, Bix GJ. Vascular neural network phenotypic transformation after traumatic injury: potential role in long-term sequelae. Transl Stroke Res. 2014;5(3):394–406. 66. Shastri A, Bonifati DM, Kishore U. Innate immunity and neuroinflammation. Mediators Inflamm. 2013;2013:342931. 67. Ransohoff RM, Brown MA. Innate immunity in the central nervous system. J Clin Invest. 2012;122(4):1164–71. 35. Cai W, et al. Pericytes in Brain Injury and Repair After Ischemic Stroke. Transl Stroke Res. 2017;8(2):107–21. 68. Sofroniew MV. Molecular dissection of reactive astrogliosis and glial scar formation. Trends Neurosci. 2009;32(12):638–47. 36. Villapol S, et al. References Yang Z, Wang KK. Glial fibrillary acidic protein: from intermediate filament assembly and gliosis to neurobiomarker. Trends Neurosci. 2015;38(6):364–74. 77. Voskuhl RR, et al. Reactive astrocytes form scar-like perivascular barriers to leukocytes during adaptive immune inflammation of the CNS. J Neurosci. 2009;29(37):11511–22. 46. Sofroniew MV. Astrocyte barriers to neurotoxic inflammation. Nat Rev Neurosci. 2015;16(5):249–63. 47. Rothstein JD, et al. Knockout of glutamate transporters reveals a major role for astroglial transport in excitotoxicity and clearance of glutamate. Neuron. 1996;16(3):675–86. 78. Michinaga S, Koyama Y. Dual Roles of Astrocyte-Derived Factors in Regulation of Blood-Brain Barrier Function after Brain Damage. Int J Mol Sci. 2019:20(3). 48. Anderson CM, Swanson RA. Astrocyte glutamate transport: review of properties, regulation, and physiological functions. Glia. 2000;32(1):1–14. 79. Burda JE, Bernstein AM, Sofroniew MV. Astrocyte roles in traumatic brain injury. Exp Neurol. 2016;275(Pt 3):305–15. 80. Sweeney MD, Sagare AP, Zlokovic BV. Blood-brain barrier breakdown in Alzheimer disease and other neurodegenerative disorders. Nat Rev Neurol. 2018;14(3):133–50. 49. Zou J, et al. Glutamine synthetase down-regulation reduces astrocyte protection against glutamate excitotoxicity to neurons. Neurochem Int. 2010;56(4):577–84. 50. Ye ZC, et al. Functional hemichannels in astrocytes: a novel mechanism of glutamate release. J Neurosci. 2003;23(9):3588–96. 81. Jessen NA, et al. The Glymphatic System: A Beginner's Guide. Neurochem Res. 2015;40(12):2583–99. 82. Louveau A, et al. Understanding the functions and relationships of the glymphatic system and meningeal lymphatics. J Clin Invest. 2017;127(9):3210 51. Slemmer JE, et al. Antioxidants and free radical scavengers for the treatment of stroke, traumatic brain injury and aging. Curr Med Chem. 2008; 15(4):404–14. 83. Garber C, et al. Astrocytes decrease adult neurogenesis during virus-induced memory dysfunction via IL-1. Nat Immunol. 2018;19(2):151–61. 52. Dringen R, Gutterer JM, Hirrlinger J. Glutathione metabolism in brain metabolic interaction between astrocytes and neurons in the defense against reactive oxygen species. Eur J Biochem. 2000;267(16):4912–6. 84. Tsai HH, et al. Regional astrocyte allocation regulates CNS synaptogenesis and repair. Science. 2012;337(6092):358–62. 53. Magistretti PJ, Pellerin L. Cellular mechanisms of brain energy metabolism and their relevance to functional brain imaging. Philos Trans R Soc Lond B Biol Sci. 1999;354(1387):1155–63. 85. Vignoli B, et al. Peri-Synaptic Glia Recycles Brain-Derived Neurotrophic Factor for LTP Stabilization and Memory Retention. Neuron. 2016;92(4): 873–87. 54. Danbolt NC. Glutamate uptake. Prog Neurobiol. 2001;65(1):1–105. 86. Zhou Y, et al. Advance of Stem Cell Treatment for Traumatic Brain Injury. Front Cell Neurosci. 2019;13:301. 55. Magistretti PJ. Neuron-glia metabolic coupling and plasticity. J Exp Biol. References Neurorestoration after traumatic brain injury through angiotensin II receptor blockage. Brain. 2015;138(Pt 11):3299–315. 69. Fujita T, et al. Cellular dynamics of macrophages and microglial cells in reaction to stab wounds in rat cerebral cortex. Acta Neurochir (Wien). 1998; 140(3):275–9. 37. Wennersten A, Holmin S, Mathiesen T. Characterization of Bax and Bcl-2 in apoptosis after experimental traumatic brain injury in the rat. Acta Neuropathol. 2003;105(3):281–8. 70. Di Giovanni S, et al. Cell cycle inhibition provides neuroprotection and reduces glial proliferation and scar formation after traumatic brain injury. Proc Natl Acad Sci U S A. 2005;102(23):8333–8. p ; ( ) 38. Nirmala JG, Lopus M. Cell death mechanisms in eukaryotes. Cell Biol Toxicol. 2019. . Nirmala JG, Lopus M. Cell death mechanisms in eukaryotes. Cell Biol Tox 39. Chen T, et al. Arc silence aggravates traumatic neuronal injury via mGluR1- mediated ER stress and necroptosis. Cell Death Dis. 2020;11(1):4. 71. Susarla BT, et al. Temporal patterns of cortical proliferation of glial cell populations after traumatic brain injury in mice. ASN Neuro. 2014;6(3):159–70 71. Susarla BT, et al. Temporal patterns of cortical proliferation of glial cell populations after traumatic brain injury in mice. ASN Neuro. 2014;6(3):159–70 40. Degterev A, Ofengeim D, Yuan J. Targeting RIPK1 for the treatment of human diseases. Proc Natl Acad Sci U S A. 2019;116(20):9714–22. 72. Murakami K, et al. Subarachnoid Hemorrhage Induces Gliosis and Increased Expression of the Pro-inflammatory Cytokine High Mobility Group Box 1 Protein. Transl Stroke Res. 2011;2(1):72–9. 41. Bao Z, et al. Silencing of A20 Aggravates Neuronal Death and Inflammation After Traumatic Brain Injury: A Potential Trigger of Necroptosis. Front Mol Neurosci. 2019;12:222. 73. Peng L, Parpura V, Verkhratsky A. EDITORIAL Neuroglia as a Central Element of Neurological Diseases: An Underappreciated Target for Therapeutic Intervention. Curr Neuropharmacol. 2014;12(4):303–7. 42. Royce GH, Brown-Borg HM, Deepa SS. The potential role of necroptosis in inflammaging and aging. Geroscience. 2019;41(6):795–811. 74. Karimi-Abdolrezaee S, Billakanti R. Reactive astrogliosis after spinal cord injury-beneficial and detrimental effects. Mol Neurobiol. 2012;46(2):251–64. 43. Chen J, et al. Molecular Insights into the Mechanism of Necroptosis: The Necrosome As a Potential Therapeutic Target. Cells. 2019:8(12). 75. Burda JE, Sofroniew MV. Reactive Gliosis and the Multicellular Response to CNS Damage and Disease. Neuron. 2014;81(2):229–48. 44. Zhang X, et al. Bench-to-bedside review: Apoptosis/programmed cell death triggered by traumatic brain injury. Crit Care. 2005;9(1):66–75. 76. Cregg JM, et al. Functional regeneration beyond the glial scar. Exp Neurol. 2014;253:197–207. 45. References Conditional ablation of Stat3 or Socs3 discloses a dual role for reactive astrocytes after spinal cord injury. Nat Med. 2006;12(7):829–34. 115. Christopherson KS, et al. Thrombospondins are astrocyte-secreted proteins that promote CNS synaptogenesis. Cell. 2005;120(3):421–33. 145. Rodriguez-Manzaneque JC, et al. Thrombospondin-1 suppresses spontaneous tumor growth and inhibits activation of matrix metalloproteinase-9 and mobilization of vascular endothelial growth factor. Proc Natl Acad Sci U S A. 2001;98(22):12485–90. 116. Kucukdereli H, et al. Control of excitatory CNS synaptogenesis by astrocyte- secreted proteins Hevin and SPARC. Proc Natl Acad Sci. 2011;108(32):E440–9. 146. Pan H, et al. The absence of Nrf2 enhances NF-kappaB-dependent inflammation following scratch injury in mouse primary cultured astrocytes. Mediators Inflamm. 2012;2012:217580. 117. Albrecht D, et al. SPARC prevents maturation of cholinergic presynaptic terminals. Mol Cell Neurosci. 2012;49(3):364–74. 146. Pan H, et al. The absence of Nrf2 enhances NF-kappaB-dependent inflammation following scratch injury in mouse primary cultured astrocytes. Mediators Inflamm. 2012;2012:217580. 118. Jones EV, et al. Astrocytes control glutamate receptor levels at developing synapses through SPARC-beta-integrin interactions. J Neurosci. 2011;31(11): 4154–65. 147. Hubbard JA, Szu JI, Binder DK. The role of aquaporin-4 in synaptic plasticity, memory and disease. Brain Res Bull. 2018;136:118–29. 148. Ashkar S, et al. Eta-1 (osteopontin): an early component of type-1 (cell- mediated) immunity. Science. 2000;287(5454):860–4. 119. Allen NJ, et al. Astrocyte glypicans 4 and 6 promote formation of excitatory synapses via GluA1 AMPA receptors. Nature. 2012;486:410. 149. Zhang C, Chen J, Lu H. Expression of aquaporin-4 and pathological characteristics of brain injury in a rat model of traumatic brain injury. Mol Med Rep. 2015;12(5):7351–7. 120. Fuentes-Medel Y, et al. Integration of a Retrograde Signal during Synapse Formation by Glia-Secreted TGF-β Ligand. Current Biology. 2012;22(19): 1831–8. 150. Giulian D, et al. Interleukin-1 injected into mammalian brain stimulates astrogliosis and neovascularization. J Neurosci. 1988;8(7):2485–90. 121. Diniz LP, et al. Astrocyte-induced synaptogenesis is mediated by transforming growth factor beta signaling through modulation of D-serine levels in cerebral cortex neurons. J Biol Chem. 2012;287(49):41432–45. 151. Asher RA, et al. Neurocan is upregulated in injured brain and in cytokine- treated astrocytes. J Neurosci. 2000;20(7):2427–38. 122. Gómez-Casati ME, et al. Nonneuronal cells regulate synapse formation in the vestibular sensory epithelium via erbB-dependent BDNF expression. Proc Natl Acad Sci. 2010;107(39):17005–10. 152. Kwok JC, et al. Extracellular matrix and perineuronal nets in CNS repair. Dev Neurobiol. 2011;71(11):1073–89. 153. Fawcett JW, Oohashi T, Pizzorusso T. References Proc Natl Acad Sci U S A. 2012;109(13):4768–73. 104. Barkho BZ, et al. Identification of astrocyte-expressed factors that modulate neural stem/progenitor cell differentiation. Stem Cells Dev. 2006;15(3):407–21. 135. Carulli D, et al. Animals lacking link protein have attenuated perineuronal nets and persistent plasticity. Brain. 2010;133(Pt 8):2331–47. 105. Ullian EM, et al. Control of synapse number by glia. Science. 2001;291(5504): 657–61. 136. Treloar HB, et al. Tenascin-C is an inhibitory boundary molecule in the developing olfactory bulb. J Neurosci. 2009;29(30):9405–16. 106. Pfrieger FW, Barres BA. New views on synapse-glia interactions. Curr Opin Neurobiol. 1996;6(5):615–21. 137. Deller T, et al. Up-regulation of astrocyte-derived tenascin-C correlates with neurite outgrowth in the rat dentate gyrus after unilateral entorhinal cortex lesion. Neuroscience. 1997;81(3):829–46. 107. Nieweg K, Schaller H, Pfrieger FW. Marked differences in cholesterol synthesis between neurons and glial cells from postnatal rats. J Neurochem. 2009;109(1):125–34. 138. Kim HJ, et al. Elevation of hippocampal MMP-3 expression and activity during trauma-induced synaptogenesis. Exp Neurol. 2005;192(1):60–72. 108. Pfrieger FW. Roles of glial cells in synapse development. Cell Mol Life Sci. 2009;66(13):2037–47. 139. Falo MC, et al. Matrix metalloproteinase-3 expression profile differentiates adaptive and maladaptive synaptic plasticity induced by traumatic brain injury. J Neurosci Res. 2006;84(4):768–81. 109. Buss A, et al. Growth-modulating molecules are associated with invading Schwann cells and not astrocytes in human traumatic spinal cord injury. Brain. 2007;130(Pt 4):940–53. 140. Albensi BC. Models of brain injury and alterations in synaptic plasticity. J Neurosci Res. 2001;65(4):279–83. 110. Ullian EM, Christopherson KS, Barres BA. Role for glia in synaptogenesis. Glia. 2004;47(3):209–16. 141. Allen NJ. Role of glia in developmental synapse formation. Curr Opin Neurobiol. 2013;23(6):1027–33. 111. Falo MC, Reeves TM, Phillips LL. Agrin expression during synaptogenesis induced by traumatic brain injury. J Neurotrauma. 2008;25(7):769–83. 142. Clarke LE, Barres BA. Emerging roles of astrocytes in neural circuit development. Nat Rev Neurosci. 2013;14(5):311–21. 112. Bali N, et al. Progesterone antagonism of neurite outgrowth depends on microglial activation via Pgrmc1/S2R. Endocrinology. 2013;154(7):2468–80. 143. Cuzzocrea S, et al. Sphingosine 1-Phosphate Receptor Subtype 1 as a Therapeutic Target for Brain Trauma. J Neurotrauma. 2018;35(13):1452–66. 113. Herrmann JE, et al. STAT3 is a critical regulator of astrogliosis and scar formation after spinal cord injury. J Neurosci. 2008;28(28):7231–43. 144. Yew WP, et al. Early treatment with minocycline following stroke in rats improves functional recovery and differentially modifies responses of peri- infarct microglia and astrocytes. J Neuroinflammation. 2019;16(1):6. 114. Okada S, et al. References 2007;28(3):138–45. Page 14 of 16 Page 14 of 16 Zhou et al. Cell Communication and Signaling (2020) 18:62 (2020) 18:62 Zhou et al. Cell Communication and Signaling (2020) 18:62 96. Amorini AM, et al. Severity of experimental traumatic brain injury modulates changes in concentrations of cerebral free amino acids. J Cell Mol Med. 2017;21(3):530–42. 125. Yi JH, et al. Alterations in sulfated chondroitin glycosaminoglycans following controlled cortical impact injury in mice. J Comp Neurol. 2012;520(15):3295–313. 126. Buss A, et al. Gradual loss of myelin and formation of an astrocytic scar during Wallerian degeneration in the human spinal cord. Brain. 2004;127(Pt 1):34–44. 97. Wilhelmsson U, et al. The role of GFAP and vimentin in learning and memory. Biol Chem. 2019;400(9):1147–56. 127. Li L, et al. Toll-like receptor 9 antagonism modulates astrocyte function and preserves proximal axons following spinal cord injury. Brain Behav Immun. 2019;80:328–43. 98. Wilhelmsson U, et al. Absence of glial fibrillary acidic protein and vimentin prevents hypertrophy of astrocytic processes and improves post-traumatic regeneration. J Neurosci. 2004;24(21):5016–21. 99. de Pablo Y, et al. Intermediate filaments are important for astrocyte response to oxidative stress induced by oxygen-glucose deprivation and reperfusion. Histochem Cell Biol. 2013;140(1):81–91. 128. Bradbury EJ, et al. Chondroitinase ABC promotes functional recovery after spinal cord injury. Nature. 2002;416(6881):636–40. 129. Wang D, Fawcett J. The perineuronal net and the control of CNS plasticity. Cell Tissue Res. 2012;349(1):147–60. 100. Wang X, Messing A, David S. Axonal and Nonneuronal Cell Responses to Spinal Cord Injury in Mice Lacking Glial Fibrillary Acidic Protein. Exp Neurol. 1997;148(2):568–76. 130. Sorg BA, et al. Casting a Wide Net: Role of Perineuronal Nets in Neural Plasticity. J Neurosci. 2016;36(45):11459–68. 101. Prozorovski T, et al. Sirt1 contributes critically to the redox-dependent fate of neural progenitors. Nat Cell Biol. 2008;10(4):385–94. 131. Shen Y, et al. PTPsigma is a receptor for chondroitin sulfate proteoglycan, an inhibitor of neural regeneration. Science. 2009;326(5952):592–6. 102. Viviani B, et al. Interleukin-1beta enhances NMDA receptor-mediated intracellular calcium increase through activation of the Src family of kinases. J Neurosci. 2003;23(25):8692–700. 132. Dickendesher TL, et al. NgR1 and NgR3 are receptors for chondroitin sulfate proteoglycans. Nat Neurosci. 2012;15(5):703–12. 133. Coles CH, et al. Proteoglycan-specific molecular switch for RPTPsigma clustering and neuronal extension. Science. 2011;332(6028):484–8. 103. Vezzani A, Baram TZ. New roles for interleukin-1 Beta in the mechanisms of epilepsy. Epilepsy Curr. 2007;7(2):45–50. 134. Brown JM, et al. A sulfated carbohydrate epitope inhibits axon regeneration after injury. References 1997;158(1):438–45. 196. Bell RD, et al. Apolipoprotein E controls cerebrovascular integrity via cyclophilin A. Nature. 2012;485(7399):512–6. 197. Cao F, et al. Apolipoprotein E-Mimetic COG1410 Reduces Acute Vasogenic Edema following Traumatic Brain Injury. J Neurotrauma. 2016;33(2):175–82. 171. Tuttolomondo A, Pecoraro R, Pinto A. Studies of selective TNF inhibitors in the treatment of brain injury from stroke and trauma: a review of the evidence to date. Drug Des Devel Ther. 2014;8:2221–38. 198. Teng Z, et al. ApoE Influences the Blood-Brain Barrier Through the NF- kappaB/MMP-9 Pathway After Traumatic Brain Injury. Sci Rep. 2017;7(1):6649 172. Boison D. The adenosine kinase hypothesis of epileptogenesis. Prog Neurobiol. 2008;84(3):249–62. 199. Methia N, et al. ApoE deficiency compromises the blood brain barrier especially after injury. Mol Med. 2001;7(12):810–5. 173. Bloom GS. Amyloid-β and tau: the trigger and bullet in Alzheimer disease pathogenesis. JAMA Neurol. 2014;71(4):505–8. 200. Hafezi-Moghadam A, Thomas KL, Wagner DD. ApoE deficiency leads to a progressive age-dependent blood-brain barrier leakage. Am J Physiol Cell Physiol. 2007;292(4):C1256–62. 174. McKee AC, et al. The spectrum of disease in chronic traumatic encephalopathy. Brain. 2013;136(Pt 1):43–64. encephalopathy. Brain. 2013;136(Pt 1):43–64. 201. Zheng M, et al. ApoE-deficient promotes blood-brain barrier disruption in experimental autoimmune encephalomyelitis via alteration of MMP-9. J Mol Neurosci. 2014;54(2):282–90. 175. Chen H, et al. Head injury and amyotrophic lateral sclerosis. Am J Epidemiol. 2007;166(7):810–6. 176. McKee AC, et al. Chronic traumatic encephalopathy in athletes: progressive tauopathy after repetitive head injury. J Neuropathol Exp Neurol. 2009;68(7): 709–35. 202. Pang J, et al. Inhibition of Blood-Brain Barrier Disruption by an Apolipoprotein E-Mimetic Peptide Ameliorates Early Brain Injury in Experimental Subarachnoid Hemorrhage. Transl Stroke Res. 2017;8(3):257–72. 177. Luissint AC, et al. Tight junctions at the blood brain barrier: physiological architecture and disease-associated dysregulation. Fluids Barriers CNS. 2012; 9(1):23. 203. Pang J, et al. Apolipoprotein E Exerts a Whole-Brain Protective Property by Promoting M1? Microglia Quiescence After Experimental Subarachnoid Hemorrhage in Mice. Transl Stroke Res. 2018;9(6):654–68. 178. Burek, M., et al., Hypoxia-Induced MicroRNA-212/132 Alter Blood-Brain Barrier Integrity Through Inhibition of Tight Junction-Associated Proteins in Human and Mouse Brain Microvascular Endothelial Cells. Transl Stroke Res, 2019. 204. Jiang S, et al. Vascular endothelial growth factors enhance the permeability of the mouse blood-brain barrier. PLoS One. 2014;9(2):e86407. 205. Wu L, et al. Vascular endothelial growth factor aggravates cerebral ischemia and reperfusion-induced blood-brain-barrier disruption through regulating LOC102640519/HOXC13/ZO-1 signaling. Exp Cell Res. 2018;369(2):275–83. 179. Brickler TR, et al. References Astrocyte-derived retinoic acid: a novel regulator of blood- brain barrier function in multiple sclerosis. Acta Neuropathol. 2014;128(5): 691–703. 189. Mizee MR, et al. Astrocyte-derived retinoic acid: a novel regulator of blood- brain barrier function in multiple sclerosis. Acta Neuropathol. 2014;128(5): 691–703. 162. Myer DJ, et al. Essential protective roles of reactive astrocytes in traumatic brain injury. Brain. 2006;129(Pt 10):2761–72. 163. Murai KK, Pasquale EB. Eph receptors and ephrins in neuron-astrocyte communication at synapses. Glia. 2011;59(11):1567–78. 190. Kong L, et al. Retinoic acid ameliorates blood-brain barrier disruption following ischemic stroke in rats. Pharmacol Res. 2015;99:125–36. 164. Filosa A, et al. Neuron-glia communication via EphA4/ephrin-A3 modulates LTP through glial glutamate transport. Nat Neurosci. 2009;12(10):1285–92. 191. Gille J, et al. Retinoic acid inhibits the regulated expression of vascular cell adhesion molecule-1 by cultured dermal microvascular endothelial cells. J Clin Invest. 1997;99(3):492–500. 165. Gupta RK, Prasad S. Early down regulation of the glial Kir4.1 and GLT-1 expression in pericontusional cortex of the old male mice subjected to traumatic brain injury. Biogerontology. 2013;14(5):531–41. 192. Bake S, et al. Insulin-Like Growth Factor (IGF)-I Modulates Endothelial Blood- Brain Barrier Function in Ischemic Middle-Aged Female Rats. Endocrinology. 2016;157(1):61–9. 166. Klein P, et al. Commonalities in epileptogenic processes from different acute brain insults: Do they translate? Epilepsia. 2018;59(1):37–66. 193. Bake S, et al. Insulin-like Growth Factor (IGF)-1 treatment stabilizes the microvascular cytoskeleton under ischemic conditions. Exp Neurol. 2019;311: 162–72. 167. Buritica E, et al. Changes in calcium-binding protein expression in human cortical contusion tissue. J Neurotrauma. 2009;26(12):2145–55. 168. Kim SY, et al. A potential role for glia-derived extracellular matrix remodeling in postinjury epilepsy. J Neurosci Res. 2016;94(9):794–803. 194. Mahley RW, Weisgraber KH, Huang Y. Apolipoprotein E: structure determines function, from atherosclerosis to Alzheimer's disease to AIDS. J Lipid Res. 2009;50(Suppl):S183–8. 169. Volman V, Bazhenov M, Sejnowski TJ. Divide and conquer: functional segregation of synaptic inputs by astrocytic microdomains could alleviate paroxysmal activity following brain trauma. PLoS Comput Biol. 2013;9(1): e1002856. 195. Nishitsuji K, et al. Apolipoprotein E regulates the integrity of tight junctions in an isoform-dependent manner in an in vitro blood-brain barrier model. J Biol Chem. 2011;286(20):17536–42. 170. Akassoglou K, et al. Astrocyte-specific but not neuron-specific transmembrane TNF triggers inflammation and degeneration in the central nervous system of transgenic mice. J Immunol. 1997;158(1):438–45. 170. Akassoglou K, et al. Astrocyte-specific but not neuron-specific transmembrane TNF triggers inflammation and degeneration in the central nervous system of transgenic mice. J Immunol. References The roles of perineuronal nets and the perinodal extracellular matrix in neuronal function. Nat Rev Neurosci. 2019; 20(8):451–65. 123. Garrett AM, Weiner JA. Control of CNS synapse development by {gamma}- protocadherin-mediated astrocyte-neuron contact. J Neurosci. 2009;29(38): 11723–31. 124. Jeong SR, et al. Hepatocyte growth factor reduces astrocytic scar formation and promotes axonal growth beyond glial scars after spinal cord injury. Exp Neurol. 2012;233(1):312–22. 154. Frischknecht R, et al. Brain extracellular matrix affects AMPA receptor lateral mobility and short-term synaptic plasticity. Nat Neurosci. 2009;12(7):897–904. Page 15 of 16 Page 15 of 16 Zhou et al. Cell Communication and Signaling (2020) 18:62 (2020) 18:62 Zhou et al. Cell Communication and Signaling (2020) 18:62 155. Pyka M, et al. Chondroitin sulfate proteoglycans regulate astrocyte- dependent synaptogenesis and modulate synaptic activity in primary embryonic hippocampal neurons. Eur J Neurosci. 2011;33(12):2187–202. 183. Alvarez JI, et al. The Hedgehog pathway promotes blood-brain barrier integrity and CNS immune quiescence. Science. 2011;334(6063):1727–31. 184. Brilha S, et al. Matrix metalloproteinase-9 activity and a downregulated Hedgehog pathway impair blood-brain barrier function in an in vitro model of CNS tuberculosis. Sci Rep. 2017;7(1):16031. 156. Beattie EC, et al. Control of synaptic strength by glial TNFalpha. Science. 2002;295(5563):2282–5. 185. Xia YP, et al. Recombinant human sonic hedgehog protein regulates the expression of ZO-1 and occludin by activating angiopoietin-1 in stroke damage. PLoS One. 2013;8(7):e68891. 157. Stellwagen D, Malenka RC. Synaptic scaling mediated by glial TNF-alpha. Nature. 2006;440(7087):1054–9. 158. Steinmetz CC, Turrigiano GG. Tumor necrosis factor-alpha signaling maintains the ability of cortical synapses to express synaptic scaling. J Neurosci. 2010;30(44):14685–90. 186. Igarashi Y, et al. Expression of receptors for glial cell line-derived neurotrophic factor (GDNF) and neurturin in the inner blood-retinal barrier of rats. Cell Struct Funct. 2000;25(4):237–41. 159. Sofroniew MV. Reactive astrocytes in neural repair and protection. Neuroscientist. 2005;11(5):400–7. 187. Shimizu F, et al. Pericyte-derived glial cell line-derived neurotrophic factor increase the expression of claudin-5 in the blood-brain barrier and the blood-nerve barrier. Neurochem Res. 2012;37(2):401–9. 160. Bush TG, et al. Leukocyte infiltration, neuronal degeneration, and neurite outgrowth after ablation of scar-forming, reactive astrocytes in adult transgenic mice. Neuron. 1999;23(2):297–308. 188. Xiao W, et al. GDNF is involved in the barrier-inducing effect of enteric glial cells on intestinal epithelial cells under acute ischemia reperfusion stimulation. Mol Neurobiol. 2014;50(2):274–89. 161. Faulkner JR, et al. Reactive astrocytes protect tissue and preserve function after spinal cord injury. J Neurosci. 2004;24(9):2143–55. 189. Mizee MR, et al. References Angiopoietin/Tie2 Axis Regulates the Age-at-Injury Cerebrovascular Response to Traumatic Brain Injury. J Neurosci. 2018;38(45): 9618–34. 206. Argaw AT, et al. Astrocyte-derived VEGF-A drives blood-brain barrier disruption in CNS inflammatory disease. J Clin Invest. 2012;122(7):2454–68. 180. Gurnik S, et al. Angiopoietin-2-induced blood-brain barrier compromise and increased stroke size are rescued by VE-PTP-dependent restoration of Tie2 signaling. Acta Neuropathol. 2016;131(5):753–73. 207. Kim E, et al. Inhibition of VEGF Signaling Reduces Diabetes-Exacerbated Brain Swelling, but Not Infarct Size, in Large Cerebral Infarction in Mice. Transl Stroke Res. 2018;9(5):540–8. 181. Zhao J, et al. Angiopoietin-1 protects the endothelial cells against advanced glycation end product injury by strengthening cell junctions and inhibiting cell apoptosis. J Cell Physiol. 2015;230(8):1895–905. 208. Yang Y, et al. Matrix metalloproteinase-mediated disruption of tight junction proteins in cerebral vessels is reversed by synthetic matrix metalloproteinase inhibitor in focal ischemia in rat. J Cereb Blood Flow Metab. 2007;27(4):697–709. 182. Alvarez JI, Katayama T, Prat A. Glial influence on the blood brain barrier. Glia. 2013;61(12):1939–58. Page 16 of 16 Zhou et al. Cell Communication and Signaling (2020) 18:62 (2020) 18:62 Zhou et al. Cell Communication and Signaling (2020) 18:62 209. Liu X, et al. Effects of blockade of ionotropic glutamate receptors on blood- brain barrier disruption in focal cerebral ischemia. Neurol Sci. 2010;31(6): 699–703. 233. Fontana AC, et al. Enhancing glutamate transport: mechanism of action of Parawixin1, a neuroprotective compound from Parawixia bistriata spider venom. Mol Pharmacol. 2007;72(5):1228–37. 210. Andras IE, et al. The NMDA and AMPA/KA receptors are involved in glutamate-induced alterations of occludin expression and phosphorylation in brain endothelial cells. J Cereb Blood Flow Metab. 2007;27(8):1431–43. 234. Barron KD, et al. Ultrastructural features of a brain injury model in cat. I. Vascular and neuroglial changes and the prevention of astroglial swelling by a fluorenyl (aryloxy) alkanoic acid derivative (L-644,711). Acta Neuropathol. 1988;75(3):295–307. 211. Kim JE, Ryu HJ, Kang TC. Status epilepticus induces vasogenic edema via tumor necrosis factor-alpha/ endothelin-1-mediated two different pathways. PLoS One. 2013;8(9):e74458. 235. Kimelberg HK, et al. Brain anti-cytoxic edema agents. Prog Clin Biol Res. 1990;361:363–85. 236. Bhalala OG, et al. MicroRNA-21 regulates astrocytic response following spinal cord injury. J Neurosci. 2012;32(50):17935–47. 212. Kim JY, et al. ETB receptor-mediated MMP-9 activation induces vasogenic edema via ZO-1 protein degradation following status epilepticus. Neuroscience. 2015;304:355–67. 237. Pan YB, Sun ZL, Feng DF. The Role of MicroRNA in Traumatic Brain Injury. Neuroscience. 2017;367:189–99. 213. Min H, et al. References TLR2-induced astrocyte MMP9 activation compromises the blood brain barrier and exacerbates intracerebral hemorrhage in animal models. Mol Brain. 2015;8:23. 238. Hong P, Jiang M, Li H. Functional requirement of dicer1 and miR-17-5p in reactive astrocyte proliferation after spinal cord injury in the mouse. Glia. 2014;62(12):2044–60. 214. Zhang S, et al. Autophagy- and MMP-2/9-mediated Reduction and Redistribution of ZO-1 Contribute to Hyperglycemia-increased Blood-Brain Barrier Permeability During Early Reperfusion in Stroke. Neuroscience. 2018; 377:126–37. 239. Yang X, et al. Hypertonic saline maintains coagulofibrinolytic homeostasis following moderatetosevere traumatic brain injury by regulating monocyte phenotype via expression of lncRNAs. Mol Med Rep. 2019;19(2):1083–91. 215. Gu Y, et al. Caveolin-1 regulates nitric oxide-mediated matrix metalloproteinases activity and blood-brain barrier permeability in focal cerebral ischemia and reperfusion injury. J Neurochem. 2012;120(1):147–56. Publisher’s Note Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations. 216. Jiang Z, et al. Role of nitric oxide synthases in early blood-brain barrier disruption following transient focal cerebral ischemia. PLoS One. 2014;9(3): e93134. 217. Chen H, et al. Baicalin Attenuates Blood-Brain Barrier Disruption and Hemorrhagic Transformation and Improves Neurological Outcome in Ischemic Stroke Rats with Delayed t-PA Treatment: Involvement of ONOO(- )-MMP-9 Pathway. Transl Stroke Res. 2018;9(5):515–29. 218. Sang H, et al. Early Increased Bradykinin 1 Receptor Contributes to Hemorrhagic Transformation After Ischemic Stroke in Type 1 Diabetic Rats. Transl Stroke Res. 2017;8(6):597–611. 219. Shen YH, Wang XL, Wilcken DE. Nitric oxide induces and inhibits apoptosis through different pathways. FEBS Lett. 1998;433(1-2):125–31. 220. Vazana U, et al. Glutamate-Mediated Blood-Brain Barrier Opening: Implications for Neuroprotection and Drug Delivery. J Neurosci. 2016;36(29): 7727–39. 221. Shohami E, et al. Cytokine production in the brain following closed head injury: dexanabinol (HU-211) is a novel TNF-alpha inhibitor and an effective neuroprotectant. J Neuroimmunol. 1997;72(2):169–77. 222. Prager B, Spampinato SF, Ransohoff RM. Sphingosine 1-phosphate signaling at the blood-brain barrier. Trends Mol Med. 2015;21(6):354–63. 223. Zuo S, et al. Artesunate Protected Blood-Brain Barrier via Sphingosine 1 Phosphate Receptor 1/Phosphatidylinositol 3 Kinase Pathway After Subarachnoid Hemorrhage in Rats. Mol Neurobiol. 2017;54(2):1213–28. 224. Sun N, et al. Critical Role of the Sphingolipid Pathway in Stroke: a Review of Current Utility and Potential Therapeutic Targets. Transl Stroke Res. 2016; 7(5):420–38. 225. Hasegawa Y, et al. Role of the sphingosine metabolism pathway on neurons against experimental cerebral ischemia in rats. Transl Stroke Res. 2013;4(5):524–32. 226. Schuhmann MK, et al. Fingolimod (FTY720-P) Does Not Stabilize the Blood- Brain Barrier under Inflammatory Conditions in an in Vitro Model. Int J Mol Sci. 2015;16(12):29454–66. 227. Choo AM, et al. Antagonism of purinergic signalling improves recovery from traumatic brain injury. Brain. 2013;136(Pt 1):65–80. 227. Choo AM, et al. Antagonism of purinergic signalling improves recovery from traumatic brain injury. Brain. 2013;136(Pt 1):65–80. 228. Ikonomidou C, Turski L. Why did NMDA receptor antagonists fail clinical trials for stroke and traumatic brain injury? Lancet Neurol. 2002;1(6):383–6. 228. Ikonomidou C, Turski L. Why did NMDA receptor antagonists fail clinical trials for stroke and traumatic brain injury? Lancet Neurol. 2002;1(6):383–6. 229. Barreto G, et al. Selective estrogen receptor modulators decrease reactive astrogliosis in the injured brain: effects of aging and prolonged depletion of ovarian hormones. Endocrinology. 2009;150(11):5010–5. 229. Barreto G, et al. Publisher’s Note Selective estrogen receptor modulators decrease reactive astrogliosis in the injured brain: effects of aging and prolonged depletion of ovarian hormones. Endocrinology. 2009;150(11):5010–5. 230. Katz PS, et al. Endocannabinoid degradation inhibition improves neurobehavioral function, blood-brain barrier integrity, and neuroinflammation following mild traumatic brain injury. J Neurotrauma. 2015;32(5):297–306. 230. Katz PS, et al. Endocannabinoid degradation inhibition improves neurobehavioral function, blood-brain barrier integrity, and neuroinflammation following mild traumatic brain injury. J Neurotrauma. 2015;32(5):297–306. 231. Morris GF, et al. Failure of the competitive N-methyl-D-aspartate antagonist Selfotel (CGS 19755) in the treatment of severe head injury: results of two phase III clinical trials.The Selfotel Investigators. J Neurosurg. 1999;91(5):737–43. 232. Rothstein JD, et al. Beta-lactam antibiotics offer neuroprotection by increasing glutamate transporter expression. Nature. 2005;433(7021):73–7.
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Supplementary Figure S3 from Whole-Exome Sequencing Analysis of the Progression from Non–Low-Grade Ductal Carcinoma &lt;i&gt;In Situ&lt;/i&gt; to Invasive Ductal Carcinoma
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upplementary Figure S3. Copy number profiles of ductal carcinomas in situ (DCIS) vasive ductal carcinomas of no special type (IDC-NST), and frequency of most comm upplementary Figure S3. Copy number profiles of ductal carcinomas in situ (DCIS) vasive ductal carcinomas of no special type (IDC-NST), and frequency of most comm Supplementary Figure S3. Copy number profiles of ductal carcinomas in situ (DCIS) and invasive ductal carcinomas of no special type (IDC-NST), and frequency of most commonly mutated genes in DCIS, compared to luminal B IDC-NSTs, and according to ER/HER2 status (A) Heatmap illustrating copy number alterations in pure DCIS (n=7), and in synchronously diagnosed DCIS (n=27) and IDC-NSTs (n=26). Clinicopathologic characteristics are shown in phenobars (left). (B- I) Frequency plots and Fisher's exact test corrected for multiple testing comparing copy number gains and losses (left) and amplifications and homozygous deletions (right) in (B) synchronous DCIS (n=27) and IDC-NSTs from this study (n=26), (C) synchronous DCIS (n=27) and IDC-NSTs from TCGA matched to DCIS from this study by age, menopausal status and ER/HER2 status at a 3:1 ratio (n=81), (D) synchronous ER-positive DCIS from this study (n=20) and ER-positive luminal B IDC-NSTs from TCGA matched to the synchronous ER-positive DCIS from this study by age, menopausal status and HER2 status (n=60), (E) synchronous DCIS (n=27) and pure DCIS (n=7) from this study, (F) grade 2 DCIS (n=14) and grade 3 DCIS (n=20) from this study, (G) ER-positive/HER2-negative DCIS (n=21) and ER-negative/HER2-negative DCIS (n=6) from this study, (H) ER-positive/HER2-negative DCIS (n=21) and HER2-positive DCIS (n=7) from this study, and (I) ER-negative/HER2-negative DCIS (n=6) and HER2-positive DCIS (n=7) from this study. The frequency of gains/amplifications (green bars) or losses/homozygous deletions (purple bars) for each gene is plotted on the y-axis according to genomic position (x-axis). Inverse Log10 values of the Fisher's exact test P values are plotted according to genomic location (lower panels). (J-K) Comparison of the most frequently mutated cancer genes of the MSK-IMPACT panel identified in (J) synchronous ER-positive DCIS from this study (n=20) and in ER- positive luminal B IDC-NSTs from TCGA (n=60) matched to the synchronous ER-positive DCIS from this study by age, menopausal status and HER2 status at a 3:1 ratio, and in (K) ER-positive/HER2- negative DCIS from this study (n=21), ER-negative/HER2-negative DCIS (n=6) and HER2-positive DCIS (n=7) from this study. Cases are shown in columns and genes in rows. Fisher's exact test. ER, estrogen receptor; DCIS, ductal carcinoma in situ; IDC-NST, invasive ductal carcinoma of no special type; indel, insertion and deletion; SNV, single nucleotide variant; WES, whole-exome sequencing.
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Lifestyle modification practice and associated factors among diagnosed hypertensive patients in selected Hospitals in West Arsi Zone, Oromia Regional State, Ethiopia
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Lifestyle Modification Practice and Associated Factors among Diagnosed Hypertensive Patients in Selected Hospitals in West Arsi Zone, Oromia Regional State, Ethiopia Hika Wakjira  (  hikawakjira@gmail.com ) West Arsi Zone health Office ,Oromia region, Ethiopia Tesfaye Gobena  Haramaya University Hirbo Shore  Haramaya University Tesfaye Gobena  Haramaya University Hirbo Shore  Haramaya University Research Article Research Article Keywords: Lifestyle modification, Hypertension, practices, Ethiopia Posted Date: March 2nd, 2021 DOI: https://doi.org/10.21203/rs.3.rs-244665/v1 License:   This work is licensed under a Creative Commons Attribution 4.0 International License. Read Full License Page 1/18 Abstract Background: Globally 1.13 billion peoples were living with hypertension, Out of this two-thirds of them were living in low and middle-income countries. In Ethiopia, Non Communicable Disease deaths are estimated at around 42%. However, it remain widely undetected and poorly controlled. To resolve these, lifestyle modification approach that often overlooked are corner stone of the prevention and management of hypertension. Objective: To assess lifestyle modification practice and associated factors among hypertensive patients in selected hospitals in West Arsi Zone, Oromia Regional, Ethiopia December 7 to 21, 2019. Method: Hospital-based cross-sectional study was conducted in the selected public hospital among 299 hypertensive patients. Systemic random sampling method were used to select the study participants. Data were collected by face-to-face interviews using a structured questionnaire by trained data collectors. Data were analyzed using descriptive statistics and multivariate logistic regression method to identify predictors of the outcome (p<0.05). Results:  Of the total participants, only 25.2% (95% CI: 18.8-32.9) of the patients were practice recommended lifestyle modifications. Patients Age older than 65 years (AOR=2.9, 95% CI: 1.17-7.0), the patients with 2-5 years’ time since diagnoses hypertension (AOR=0.26, 95%CI: 0.07-0.9), multiple co- morbidity (AOR=2.7, 95% CI: 1.25-5.8) and their knowledge on hypertension management (AOR=14.6, 95% CI: 4.6-45.9) have an independently associated with recommended lifestyle modification. Conclusion: Lifestyle modification practices among hypertensive patients were low in this study. Age, comorbidity, time since diagnoses of hypertension and knowledge of lifestyle were identified as predictors of the outcome. Introduction Hypertension is defined as when increased blood pressure, the force of blood flowing through blood vessels is consistently too high. Which occurs when systolic blood pressure is greater than or equals to 140 mmHg or diastolic blood pressure greater than or equals to 90 mmHg. So that, hypertension is when blood pressure is reading 140/90 mmHg (American heart association, 2017,). High blood pressure, also known as hypertension, is a major contributor to the global disease burden and was responsible for 17.9 million deaths each year globally. However, it remain widely undetected, undertreated and poorly controlled. Globally 1.13 billion peoples were living with hypertension, these means 1 in 4 men and 1 in 5 women had hypertension. Out of this two-thirds of them were living in low and middle-income countries (WHO, 2019). The prevention and management of hypertension are major public health challenges, (Joint, 2004). For example, globally only fewer than 1 in 5 people with hypertension have the problem under control. These is due to the sharing of four major risk factors: tobacco use, unhealthy diets, harmful use of alcohol, and Page 2/18 Page 2/18 physical inactivity. To address this World Health Organization (WHO) developed an action plan to help translate these commitments into action. This global action plan for prevention and control of NCDs for 2013-2020 emphasizes addressing population-based risk factors and the integrated management of NCDs at the primary healthcare level which recommended lifestyle modification for hypertensive patients (World Health Organization, 2013). As member state of the WHO, Ethiopia adopted the global strategy and developed the national NCD strategy for 10 years (FMOH, 2014). But fewer is known about magnitude health lifestyles since many of the study were conducted on NCD especially Hypertension in Ethiopia were focus on the pharmacological managements of hypertension and its prevalence but not on non-pharmacological managements (lifestyles modification).That means there are only few studies done on the practice of lifestyles modification and associated factors of hypertension to show the gap and magnitude of the problem in this study area. So these study that considers the practice of lifestyles modification and associated factors will guide actions to initiate for greater practice of good lifestyle modification among the hypertensive patients by providing the evidence to understanding the magnitude of the problem. So this study was to assess adherence to lifestyle modification practice and its associated factors among diagnosed hypertensive patients in the study area. Study area and period The study was conducted in West Arsi zone on selected public hospitals. West Arsi Zone found in Oromia regional state, Ethiopia. It is located 251 km from Addis Ababa. The zone has 13 rural woredas and 2 administrative towns with a total population of 2,696,430 male 1330 488 and female 1365942. Moreover, divided into three main agro-climatically zones, highland, midland, and lowland, which comprises of 45.5%, 39.6%, and 14.9% respectively(Abu et al., 2018). Data will be collected from December 7 to 21, 2019. Study design Hospital based cross-sectional study was conducted. Study population Randomly Selected hypertensive patients who fulfilled the inclusion criteria’s and were available during the time of data collection. Source population All hypertensive patients who were on follow up at hospitals in West Arsi Zone Inclusion and exclusion criteria Page 3/18 All hypertensive patients who are 18 years and older, and on medical treatment (antihypertensive) at least for 1 months period before commencement of the study was recruited were included and Patients with cognitive impairment and those less than 18 years old were immediately excluded from the study. All hypertensive patients who are 18 years and older, and on medical treatment (antihypertensive) at least for 1 months period before commencement of the study was recruited were included and Patients with cognitive impairment and those less than 18 years old were immediately excluded from the study. Independent variables Independent variables Socio-Economic variables: Age, sex, income, marital status, educational status, religion, occupation, ethnicity, residence. Socio-Economic variables: Age, sex, income, marital status, educational status, religion, occupation, ethnicity, residence. Health profile of the patients: - Time since diagnosis, presence of co-morbidity, family history of hypertension. Individual factors: - knowledge of lifestyle modification practice. Sample size determination Sample size was calculated using a single population proportion formula by assuming that 23% proportion of the patients practiced lifestyle modifications (Mengistu et al., 2017) with 95% confidence interval and 5% margin of error. Therefore, 272 + (272 x 10%) non response rate =299 hypertensive patients was included in the study. Sampling procedure In the zone, there are 7 hospitals that offer chronic follow-up services. First, out of 7 public hospitals, three was selected by simple random sampling. Then, the sample size was allocated to three hospitals proportionally (based on the number of patients reporting per month). Study subjects were selected by using systematic random sampling method; every second hypertensive patient visiting the facilities at chronic follow-up departments who were known to be hypertensive.(figure :3) Dependent variable The practice of lifestyles modifications The practice of lifestyles modifications Data collection method Page 4/18 Data was collected using standardized pre-tested interviewer administered questionnaire. Which was adapted from hypertension self-care practice questions recommended by joint national committee ( JNC 7) and WHO STEPS questionnaires(WHO,2016).The questionnaire was translated into Afan Oromo and back to English by language experts to ensure its consistency. The interview was conducted by eight BSc Nurse by using face to face interview method and two health officer supervisor was assigned to each hospital. The socio-demographic, health profiles of participants, Physical characteristics (height and weight) were measured. Weight and height of the patients was measured and BMI was calculated and Page 4/18 classified using WHO guideline as normal weight, overweight and obese. Weight and height measurements was taken during data collection. In addition, the patient medical record was reviewed to collect data of co-morbidity and time since diagnosis of hypertension. classified using WHO guideline as normal weight, overweight and obese. Weight and height measurements was taken during data collection. In addition, the patient medical record was reviewed to collect data of co-morbidity and time since diagnosis of hypertension. Adherence to lifestyle modifications practice: Were Measured based on respondents who adhere to Adherence to lifestyle modifications practice: Were Measured based on respondents who adhere to (DASH) diet they usually or always consumed a diet rich in vegetables, grains and fruits; rarely or never consumed salt at least 3 times per week, aerobic exercise for >30 minutes per day; at least three times per week, stop smoking, and Keep daily alcohol intake below 30 mL net Alcohol according to JNC 7 recommendations. In this study the respondents who adhere to all this five healthy lifestyle were considered as adherent unless non-adherent. Co-morbidity: respondents with one or more other medical condition in addition to hypertension Diet-related adherence: Who usually or always consumed a diet rich in vegetables, fibers wholegrain, protein and fruits; rarely or never consumed salt; at least 3 times per week. Diet-related adherence: Who usually or always consumed a diet rich in vegetables, fibers wholegrain, protein and fruits; rarely or never consumed salt; at least 3 times per week. Exercise-related adherence: Such as running, riding bicycle, swimming and other aerobic exercise for >30 minutes per day; at least five times per week. Exercise-related adherence: Such as running, riding bicycle, swimming and other aerobic exercise for >30 minutes per day; at least five times per week. Smoking-related adherence: respondents who self-reported, they either never smoked or stopped smoking before 12 months. Smoking-related adherence: respondents who self-reported, they either never smoked or stopped smoking before 12 months. Salt-related Adherence: The daily consumption of salt less than 5g or 1 teaspoon or never consume per food palate Alcohol -related adherence: Either never consumed alcohol or Keep daily alcohol intake below 30 mL net Alcohol. Body mass index: calculated from the weight and height (kg/m2) normal weight (18.5 ≤ BMI < 24), overweight (24 ≤ BMI < 28), and obese (BMI ≥ 28) (WHO, 2016) Body mass index: calculated from the weight and height (kg/m2) normal weight (18.5 ≤ BMI < 24), overweight (24 ≤ BMI < 28), and obese (BMI ≥ 28) (WHO, 2016) Knowledge of healthy lifestyle: Respondents with score above the mean value on hypertension evaluation of lifestyle and management (HELM) scale were taken as having good knowledge about lifestyle modification. Operational definition Lifestyle modification is a practice which was recommended by JNC 7 as non-pharmacological managements of hypertension measured using physical exercise, low salt diet, and moderation of alcohol intake, stop smoking, and maintaining health weight. Data Quality Assurance Data Quality Assurance Page 5/18 Page 5/18 Both the data collectors and supervisors were trained for two days on the objective and methodology of the research, data collection approach. The questionnaire was translated to Afaan Oromo language and back-translated into English by another person to check for consistency. A pretest was conducted in 15(5%) of the samples in a health care institution that was not included in the final study. The data collection instruments were assessed for completeness, consistency, and applicability and was ratified accordingly. Double data entry was done by two data clerks and consistency was checked. Finally, multivariate analysis was done to control all possible confounders. The study procedures was protect the patient's privacy by allowing anonymous and voluntary participation. Both the data collectors and supervisors were trained for two days on the objective and methodology of the research, data collection approach. The questionnaire was translated to Afaan Oromo language and back-translated into English by another person to check for consistency. A pretest was conducted in 15(5%) of the samples in a health care institution that was not included in the final study. The data collection instruments were assessed for completeness, consistency, and applicability and was ratified accordingly. Double data entry was done by two data clerks and consistency was checked. Finally, multivariate analysis was done to control all possible confounders. The study procedures was protect the patient's privacy by allowing anonymous and voluntary participation. Ethical consideration Ethical clearance was obtained from Institutional Health Research Ethics Review Committee (Ref. No. IHRERC/119/2020) of the College of Health and Medical Science Harar Campus and an official letter was sent to the selected public hospitals. After getting permission from the hospitals to participate in the study, informed, voluntary, written and signed consent was obtained for willingness of both head of hospitals and patients to participate. The patients‟ privacy was maintained by conducting the interview in a private place and they will be informed that there won’t be any incentive or harm for their participation in this study. Finally, participants‟ identity was kept anonymous throughout the data collection and analysis process. Data Processing and Analysis Data were coded, checked, cleaned and entered into Epidata version 3.1 software, then exported to SPSS version 24.0 software for analysis. Data was checked for incomplete and inconsistent before analysis. Bivariate analysis was used to check associations between independent and dependent variables to identify factors which was associated with the outcome variable. Those variables which was found to have an association (p< 0.25) with the outcome variable was entered to multivariate logistic regression to test for independent association. The association between the different independent variables in relation to dependent was measured using odds ratios and 95% confidence interval (CI) and P values below 0.05 were considered to be statistically significant. Factors associated with adherence to lifestyle modifications practices The results of the bivariate analysis shows that age, Co-morbidity, time since diagnosis of Hypertension, those who has formal education and knowledge of lifestyle modification were become significant association with dependent Variable. After controlling possible confounding effects of other covariates, age, time since diagnosis, co-morbidity and knowledge about the disease were significantly affecting the adherence to healthy lifestyle modification among hypertensive patients. Patients older than 65 years was 3 times more likely to be adherent to recommended healthy lifestyle modification practices than patients younger than 64 years old (AOR=2.9, 95% CI: 1.17-7.0). Those respondents who had good knowledge were 15 times more likely to be adherent (AOR=14.6, 95% CI: 4.6-45.9) compared to the non-knowledgeable respondents. Additionally, the patients with 2-5 years since times of diagnosis were 74% times less likely practicing healthy lifestyle modification (AOR=0.26,95%CI:0.07-0.9) as compared to those on treatment for greater than 6 years of treatment. Also, patients who were with co-morbidity were 2.7 more likely to practice healthy lifestyle modification (AOR=2.7, 95% CI: 1.25-5.8) as compared to those without comorbidity (Table 4). After controlling possible confounding effects of other covariates, age, time since diagnosis, co-morbidity and knowledge about the disease were significantly affecting the adherence to healthy lifestyle modification among hypertensive patients. Patients older than 65 years was 3 times more likely to be adherent to recommended healthy lifestyle modification practices than patients younger than 64 years old (AOR=2.9, 95% CI: 1.17-7.0). Those respondents who had good knowledge were 15 times more likely to be adherent (AOR=14.6, 95% CI: 4.6-45.9) compared to the non-knowledgeable respondents. Adherence to recommended lifestyle modification practices among hypertensive patient According to the finding of these study, 25.2 %( 95 % CI: 18.8-32.9) of patients practice all recommended lifestyle modifications. As age increase the adherence to healthy lifestyles were also increase (Figure 1 & 2). Of the total participants, 63.4% do not engage in regular physical exercise for at least 3 days of the week with a minimum of 30 min duration. One hundred forty five (48.5%) of study subjects were adhere to limitation of alcohol intake and more than half (52.5%) of them practices recommended low salt diet. Additionally, majority of participants were not ever smoking 225(75.2%) and 10% of hypertensive patients were smoke cigarettes. Nearly half, 142(47.5%) of study participants were practicing recommended health weight managements. Only 45% of respondent has knowledge’s of recommended lifestyle modification practices (Table 3) Socio-demographic Characteristics of Study Participants A total 299 hypertensive patients were included in the study with response rate of 98%. The mean age ± standard deviation of the participant was 55 ±13.3 years. More than half, 172(57.4%) of the study participants were male, and 213(71.3%) were married. Over 1 in five of respondents had no formal education. Over one in five (21.8%) and 58(23.8%) Participants were government employee and in merchant, respectively. over three-quarter (76.2%) were Oromo Ethnicity and 121(40.6%) were Muslims. (Table 1). Page 6/18 Page 6/18 Clinical characteristics of Study participants From participants, the majority 144(48%) of them were less than 2 years since when they are diagnosed as hypertensive patients and 62(20.8%) patients diagnosed before 6 years on treatments. From the total, 158(53%) patients were overweight whereas 30(9.9%) were Obese. Over Two third (62.3%) of respondents had co-morbidity especially Diabetic mellitus and 117(39.1%) has family history of hypertension. (Table 2) Discussion Even though healthy lifestyle modification is one of important hypertension management, poor adherence to healthy lifestyle is one of the reasons for serious complication and uncontrolled Page 7/18 Hypertension in addition to wastage of health care resources. So, Control of hypertension requires both pharmacological and non-pharmacological treatments. Since the adherence to healthy lifestyle and medication is ultimate strategies to control hypertension, this study was aimed to asses’ lifestyle modification practices and associated factors among diagnosed hypertensive patients. According to the Main intention results of these study only 75(25.2%) participants were practicing the recommended lifestyle modification. Nearly comparable results 27.3% Adherence were revealed according to study conducted in Ethiopia in Durame and Nigist Elleni memorial hospital (Siyum et al., 2017). In contrast, the study conducted in USA shows that 50% of participants were engaged in healthy lifestyle practices (Abu et al., 2018). This might be due to difference educational back ground of patients and level of awareness about lifestyle modification and its advantages. It also might be due to patients relay only on medication without considering effects of healthy lifestyle modification on hypertension control. From the participants three fourth of them were non-smokers and half of them were abstained from any type of alcohol drinking or less than 30 mL net alcohol daily consumption. This is supported by study finding which is done in Malaysia and Ghanaian on hypertensive patients (Afia et al., 2014, Tahmina et al., 2018). This could be due to social and cultural practices that discourage alcohol drinking and smoking. In these study less than half of participants were adherent to Performing recommended physical exercise for 30 minute per day. But similar studies results from India and Thailand found (53%) and (40%) respectively (Lipilekha et al., 2017, Zahid et al., 2017). The possible explanation could be related to low awareness, socio-economic variation and lack of organized setup in living areas in developing countries like Ethiopia. In these study less than half of participants were adherent to Performing recommended physical exercise for 30 minute per day. But similar studies results from India and Thailand found (53%) and (40%) respectively (Lipilekha et al., 2017, Zahid et al., 2017). The possible explanation could be related to low awareness, socio-economic variation and lack of organized setup in living areas in developing countries like Ethiopia. Discussion Among lifestyle modification two fourth of the participants practicing limited salt diet ( ≤ 1 tsp/day of table salt) and nearly half of them were practicing maintaining’s of a healthy weight using recommended diets (DASH) including more fruits, vegetable, grains, and beans in the diet and reading nutritional facts on food labels. Similar study finding from Saudi Arabia shows that the 79.3% of patient practice low salt diet and 59.9% practicing maintaining’s of a healthy weight (Lama et al., 2017). The discrepancy between these study and the study from Saudi Arabia could be due to the economic class, the difference in the dietary habits and easy access of recommended diets. Older age respondents were found to be more adherent to health lifestyle than younger age groups. The study from kingdom of Sued Arabia support this finding ,in that age >65 years old more likely in practicing recommended lifestyle modification (Abubaker, 2015). This could be due to older persons have more education and cognitive function and have more comorbidities which may make them visit health care providers more frequently. Another explanation might be younger patients were less likely eager to control their blood pressure by practicing the lifestyle modification. Page 8/18 On the other hand, Knowledge is also significantly associated with adherence to healthy lifestyle modification. Knowledgeable hypertensive patients about healthy lifestyle were more adherent to recommended healthy lifestyle modifications. This is supported by the finding from the study in Ethiopia at the cardiac clinic of Ayder comprehensive specialized hospital and USA ,Maryland (Abu et al., 2018, Yirga et al., 2019). Explanation might be as knowledge status increase practice and motivation of lifestyle modification practice will also increase. It may be due to access to information sources like fosters, leaflets and similar written material about hypertension managements and controls A study conducted in Addis Ababa found out that people with comorbidities were more likely to be adherent to healthy lifestyle recommendations (Abu et al., 2018, Mengistu et al., 2017). Surprisingly the finding of these study also depicting respondents having one or more comorbidity were found more likely to be adherent to all the healthy lifestyle recommendations. Patients with comorbidities visit health care providers more frequently and pay more attention to their health conditions, as this was evidenced by better adherence to lifestyle modifications. Conclusion This study revealed lifestyle modification practice is low among the hypertensive patients. Of the studied variables, age, duration of the hypertension diagnosis, knowledge about lifestyle and comorbidity were factors significantly associated with health lifestyle modification practice. Out of this factors duration of the hypertension diagnosis (time since diagnosis) were negatively associated with lifestyle modification and the rests age, knowledge about healthy lifestyle and comorbidity were positively associated with lifestyle modification. Discussion Hypertensive Patients with greater than 6 years times since diagnoses were more likely to practice healthy lifestyle modification as compared to those on treatment for less 2 years treatment. This finding is supported by different studies that show patients on longer duration of treatment had good lifestyle modification practice (Durai and R, 2015, Siyum et al., 2017). This might be due to continued counseling’ and health education. The limitation is that the study didn’t include hypertensive patients who were attending follow up in private health facilities in study area. Also, research methodologies involving self-reported measures depend largely on individuals‟ memory, and recall bias may exist. Abbreviations AOR: Adjusted Odd Ratio, BP: Blood pressure, HELM: Hypertension Evaluation of Lifestyle and Management Scale. CVD: Cardiovascular Disease, DALY: Disability Adjusted life years, DASH: Diet Allowance to stop Hypertension, DBP: Diastolic blood pressure, ETB: Ethiopian birr, FMO: Federal ministry of health, HELM: Hypertension Evaluation of Lifestyle and Management Scale, JNC7: 7the Joined National Committee .NCD: Non communicable Disease, SBP: Systolic blood pressure Page 9/18 Author’s contributions HW, TG and HS made a substantial contribution to the conception design, acquisition and interpretation of data. HW drafted the manuscript and carried out rigorous editorial work. All authors revised the paper critically for the intellectual contents. All authors read and approved the final manuscript. ACKNOWLEDGEMENTS First of all I am very grateful to God. Next, I would like to thank both my advisors Associate Professor Tesfaye Gobena and Mr.Hirbo Shore (MPH) for their unreserved guidance and constructive suggestions and comments, at each step of the research development. Next I would like to thank the participants of this thesis for their cooperation and Haramay University for giving me this chance. Author’s information HW1, 2 Shala District health office West Arsi Zone, Oromia, Ethiopia. TG1, HS1 College Health and Medical science, Haramaya University, Harar, Ethiopia. Conflict of interest: The authors declare that they have no competing interests. References ABUBAKER, E. 2015. Level Of Adherence To Lifestyle Changes And Medications Among Male Hypertensive Patients In Two Hospitals In Taif; Kingdom Of Saudi Arabia International Journal of Pharmacy and Pharmaceutical Sciences 7, 168-172 ABUBAKER, E. 2015. Level Of Adherence To Lifestyle Changes And Medications Among Male Hypertensive Patients In Two Hospitals In Taif; Kingdom Of Saudi Arabia International Journal of Pharmacy and Pharmaceutical Sciences 7, 168-172 ABU, H., ABOUMATAR, H., CARSON, K., GOLDBERG, R. & L., C. 2018. Hypertension knowledge, heart healthy lifestyle practices and medication adherence among adults with hypertension. European Journal for Person Centered Healthcare, 6, 108-114. ABU, H., ABOUMATAR, H., CARSON, K., GOLDBERG, R. & L., C. 2018. Hypertension knowledge, heart healthy lifestyle practices and medication adherence among adults with hypertension. European Journal for Person Centered Healthcare, 6, 108-114. AMERICAN HEART ASSOCIATION 2017,. Guideline for the Prevention, detection, evaluation and management of high Blood Pressure in adults,. AMERICAN HEART ASSOCIATION 2017,. Guideline for the Prevention, detection, evaluation and management of high Blood Pressure in adults,. AFIA, T, F., O, M. & S, I. I. 2014. Ghanaian hypertensive patients understanding of their medicines and life style modification for managing hypertension. International Journal of Pharmacy and Pharmaceutical Sciences, 6, 165-170 DURAI, V. & R, A. 2015. Knowledge and Practice on lifestyle modifications among males with hypertension. Indian journal of community health, 27, 143-149. FMOH 2014. National strategic action plan for the prevention and control of NCDs in Ethiopia 2014 - 2016. . Page 10/18 Page 10/18 Page 10/18 JOINT, T. S. R. O. T. C. N. 2004. prevention, detection, evaluation, and treatment of high blood pressur. National Institutes of Health, U.S. Department of Health and Human Services. LAMA, A., ALSHIMAA, A., MARADI, A. & RANA, M. 2017. Awareness and Knowledge on Hypertension and its Self-Care Practices Among Hypertensive Patients in Saudi Arabia. Annals of International Medical and Dental Research,, 3, 58-63. LIPILEKHA, P., KALYAN, K., SUMITRA, P. & TRILOCHAN, S. 2017. Lifestyle Pattern and Hypertension Related Knowledge, Attitude and Practices among Diagnosed Patients of Hypertension Attending a Tertiary Care Hospital. Journal of Cardiovascular Disease Research, 8, 108-111. MENGISTU, D., TIBEBU, A. & NEGESA, L. 2017. Adherence to recommended lifestyle modifications and factors associated for hypertensive patients attending chronic follow-up units of selected public hospitals in Addis Ababa, Ethiopia,. Patient Preference and Adherence, 11, 323-330. SIYUM, E., KELBISO, L. & OLANA, R. 2017. Lifestyle modification practice andassociated factors among diagnosedhypertensive patients in selected hospitals,South Ethiopia, . Clinical Hypertension 23, 1-9. TAHMINA, N, H., K, K. & M, R. 2018. Lifestyle modification practice in rural community at Kedah in Malaysia. Journal of Basic, Clinical and Applied Health Science, 1, 19-26 WORLD HEALTH ORGANIZATION, G. 2013. A global brief on hypertension. WHO 2005. Clinical guidelines for the management of hypertension WHO 2005. Clinical guidelines for the management of hypertension WHO 2016. WHO STEPwise Approach to Chronic Disease Risk-Factor Surveillance 2016. WHO STEPwise Approach to Chronic Disease Risk-Factor Surveillance YIRGA, L., SEID, I., KASSA, T. D. & ASGEDOM, S. W. 2019. Practice and predictors of self-care behaviors among ambulatory patients with hypertension in Ethiopia. PLoS ONE 14(6), 1-16. ZAHID, H. M., MOST, L., SATYA, P. & MARIF 2017. Knowledge, attitude and practice of life style modification in the management of hypertension. Obese Eat Disorder,, 3, 21. Table 1 Socio-demographic characteristics of participants West Arsi Zone, Ethiopia, 2019 Table 3 Adherence to recommended lifestyle modifications practice among hypertensive patients attending chronic follow up units of selected hospitals in West Arsi zone, Ethiopia, 2019 Table 4: - Predictors of lifestyle modification practices among hypertensive patients attending chronic follow up units of selected hospitals in West Arsi zone, Ethiopia, 2019 Tables Page 11/18 Page 11/18 Frequency Percent (%) Age in year   (18-40 ) Early adulthood 50 16.8  (41-64 ) Middle Adulthood 132 44.1  ( ≥65 ) Late Adulthood 117 39.1 Sex Female 127 42.6 Male 172 57.4 Marital status Single 8 3 Divorce 39 12.9 Widowed 39 12.9 Married 213 71.3 Educational status Secondary 46 15.3 Primary  47 15.8 Able to read and write 56 18.8 No formal education 63 20.8 College and above 87 29.2 Employment status  Daily laborer 27 9.4 Housewife 36 11.9 Retired 42 13.9 Private employee 58 19.3 Government employee 65 21.8 Merchant   71 23.8 Religion Other(wakefata,jovh) 15 3.5 Catholic 28 6.4 Protestant 74 16.8 Muslim 182 40.6 Orthodox 61 32.6 Ethnicity Wolayita and Others 28 9.4 Amhara 43 14.4 Oromo 228 76.2 Average monthly income  <999 ETB  7 2.5 1000-1999ETB 40 13.4 No regular income 61 20.3 2000-2999ETB 86 28.7   >3000ETB 105 35.1 Table 2:- Health profiles of respondents among hypertensive patients attending chronic follow up units of selected hospitals in West Arsi zone, Ethiopia, 2019 Page 12/18 Page 12/18 Variables                                        categories                       Frequency         percent (%) Time since diagnosis  less than 2 years 144 48 2-5 years 93 31.2 greater than 6 years 62 20.8 Body mass index(kg/m2) Normal(18-24) 111 37.1 Overweight(24-28) 158 53 Obese(≥28) 30 9.9 Multiple Comorbidities   present 186 62.3            Absent   113 37.6   Family history of hypertension Yes 117             39.1 No 182 60.9 Page 13/18 Variables frequency   Percent (%)  Maintain a healthy weight        Good  142 47.5       Bad 157 52.5 Limit alcohol intake       Yes (daily net alcohol intake below 30 mL ) 145 48.5       No (daily net alcohol intake Above 30 mL) 154 51.5 Perform recommended physical exercise (30 min/day)      Yes 109 36.6      No 190 63.4  Status of tobacco use      Ever not used 225 75.2      Still smoking 30 10      Stopped smoking 44 14.8 Practice recommended low salt diet       Yes (about ≤ 1 tsp/day of table salt). 157 52.5       No (greater than 1 tsp/day of table salt). Tables 142 47.5 Adherence to all      recommended healthy lifestyle          Adherent  75 25.2        Non adherent  224 74.8 Knowledgeable about     healthy lifestyle                poor      135 45              good      164 55 frequency   Percent (%) Variables Table 4: - Predictors of lifestyle modification practices among hypertensive patients attending chronic follow up units of selected hospitals in West Arsi zone, Ethiopia, 2019 Page 14/18 Page 14/18 Variables Healthy     Lifestyle adherence        Adherent  N (%)  Non-adherent N (%) COR(95% CI) AOR(95%CI) Age in year 18-40 22(29.4) 34(15.2) 1 41-64 19(25.5) 92 (41.1) 0.59 (0.4-3.6) 1.4 (0.4 - 4.6) ≥65 34(45.1) 98(43.7)  1.6 (1.01-4.97)*  2.9(1.17-7.0)* Sex Male 35(47) 90(40.3) 1 Female 40(53) 134(59.6) 0.764(0.70-2.48) 1.13(0.5-2.3) Marital status Married 59(78.4) 154(68.8) 1 Divorce 10(13.7) 34(15.2) 0.76 (0.40-2.67) 0.9 (0.36-2.6) Widowed 6(8) 36(15.9) 2.1(0 .68,-6.5) 1.9 (0.6-6.5) Educational status No formal education 6(7.8) 56(25.1) 1 Formal education 69(92.1) 168(74.8) 3.8 (1.15-9.57)* 1.7 (0.5-5.6) Average monthly income no regular income 10(13.7) 50(22.5) 1 1000-1999ETB 6(8) 42(18.5) 0.40(0.16- 1.1) 1    (0.26-4.4) 2000-2999ETB 28(37.2) 58(25.8) 0.35(0.21-0.58)  0.4 (0.15-1.2) >3000ETB 31(41) 74(33) 1.18(0 .3-4.5) 0.48 (0.17-1.3) Knowledgeable about healthy lifestyle  Poor 16(21.5) 148(66.2) 1 Good 59(78.4) 76(33.7) 7.1(3.4-15.07)* 14.6(4.6-45.9)** Time since diagnosis  less than 2 years 44(58.8) 99(44.3) 1 2-5 years 19(25.5) 74(33.1) 0.57 (0.074-0.85)* 0.26(0.07-0.9)* greater than 6 years 12(15.6) 50(22.5) 0 .86(0.272-2.76) 0.4(0.1- 1.45) Multiple Comorbidities                  Absent 25(31.6) 126(58.6) 1 Present 54(68.3) 89(41.3) 3.05(1.771-5.28)* 2.7(1.25-5.8)** atistically significant at P<0.05, **AOR=statistically significant at P<0.001, istically significant at P<0.05, **AOR=statistically significant at P<0.001, Figures Page 15/18 Figure 1 Adherence to healthy lifestyle among hypertensive patients attending chronic follow up units of selected hospitals in West Arsi zone, Ethiopia, 2019 Figure 1 Adherence to healthy lifestyle among hypertensive patients attending chronic follow up units of selected hospitals in West Arsi zone, Ethiopia, 2019 Adherence to healthy lifestyle among hypertensive patients attending chronic follow up units of selected hospitals in West Arsi zone, Ethiopia, 2019 Page 16/18 Figure 2 Figure 2 Adherence to healthy lifestyle by age group among hypertensive patients attending chronic follow up units of selected hospitals in West Arsi zone, Ethiopia, 2019 Figure 2 Adherence to healthy lifestyle by age group among hypertensive patients attending chronic follow up units of selected hospitals in West Arsi zone, Ethiopia, 2019 Adherence to healthy lifestyle by age group among hypertensive patients attending chronic follow up units of selected hospitals in West Arsi zone, Ethiopia, 2019 Page 17/18 Page 17/18 Figure 3 Schematic presentation of sampling techniques used to select study subjects from public health hospitals in West Arsi Zone, 2019 Figure 3 Schematic presentation of sampling techniques used to select study subjects from public health hospitals in West Arsi Zone, 2019 Page 18/18
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First Experience with Fluorescence in Pediatric Laparoscopy
European journal of pediatric surgery reports
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Abstract Background The use of intraoperative fluorescence images with indocyanine green (ICG) has recently been described as an aid in decision-making during surgical procedures in adults. We present our first experiences with different laparoscopic procedures performed in children using ICG fluorescence images. Material and Method We have used ICG fluorescence imaging technique in varico- cele ligation, two nephrectomies, cholecystectomy, and one case of aortocoronary fistula closure. All procedures were performed through a minimally invasive approach. A high definition camera equipped with a visible infrared light source and gray-scale vision technology was used. After injection of ICG before or during the laparoscopic procedure, precise identifica- tion of vascular anatomy and bile duct architecture were easily identified. Fluorescence helped to assess blood flow from the spermatic vessels, define the variability of renal vascularization, and determine the precise location of the aortocoronary fistula. Biliary excretion of the ICG allowed the definition of the biliary tract. Conclusion Fluorescein-assisted images allowed a clear definition of the anatomy and safe surgical maneuvers during surgical procedures. The ICG imaging system seems to be simple and safe. Larger and more specific studies are needed to confirm its applicability, expand its indications, and address its advantages and disadvantages. Case Report e43 Case Report e43 Case Report First Experience with Fluorescence in Pediatric Laparoscopy Beatriz Fernández-Bautista1 David Peláez Mata1 Alberto Parente1 Ramón Pérez-Caballero2 Juan Carlos De Agustín3 Address for correspondence Beatriz Fernández-Bautista, Department of Pediatric Surgery, Hospital General Universitario Gregorio Maranon, St/ O’Donnell, 48, Madrid 28009, Spain (e-mail: bea.bfb89@gmail.com). Address for correspondence Beatriz Fernández-Bautista, Department of Pediatric Surgery, Hospital General Universitario Gregorio Maranon, St/ O’Donnell, 48, Madrid 28009, Spain (e-mail: bea.bfb89@gmail.com). Address for correspondence Beatriz Fernández-Bautista, Department of Pediatric Surgery, Hospital General Universitario Gregorio Maranon, St/ O’Donnell, 48, Madrid 28009, Spain (e-mail: bea.bfb89@gmail.com). 1Department of Pediatric Surgery, Hospital General Universitario Gregorio Maranon, Madrid, Spain 2Department of Cardiovascular Surgery, Hospital General Universitario Gregorio Maranon, Madrid, Madrid, Spain 3Department of Pediatric Surgery, Gregorio Marañon University Hospital, Madrid, Spain Eur J Pediatr Surg Rep 2019;7:e43–e46. New Insights and the Importance for the Pediatric Surgeon The ability to visualize the vascular structures or the bile duct allows us to approach laparoscopic techniques of different complexities, with greater safety for the patient. We have verified its use in children. DOI https://doi.org/ 10.1055/s-0039-1692191. ISSN 2194-7619. DOI https://doi.org/ 10.1055/s-0039-1692191. ISSN 2194-7619. received February 18, 2019 accepted after revision April 29, 2019 Fluorescence Use in Pediatric Laparoscopy Fernández-Bautista et al. e44 Case 2 A 13-year-old boy was scheduled for varicocelectomy. He had a clinical history of asymmetry and testicular pain. Umbilical, and right and left flank trocars (5 mm) were introduced for lens and instruments, respectively. We present our experience in different laparoscopic pro- ceduresperformed inchildren using ICGfluorescence imaging. After intravenous (IV) injection of ICG, the arterial vessels were initially visualized following by the venous vessels. Thereafter, ligation of the spermatic cord was performed in block, ensuring selection of all vessels and avoiding the section of lymphatics that are not filled in this phase (►Fig. 2). Case 3 A 13-year-old girl was admitted because of cholelithiasis and recurrent abdominal pain. She required two previous hospi- tal admissions. Laparoscopic cholecystectomy was sched- uled few days after admission. Fifteen minutes after ICG IV injection, the biliary tree was perfectly drawn, allowing clear identification of cystic artery, common bile duct, and hepatic duct. Safe dissection of the bile duct and artery was per- formed, completing cholecystectomy with total control of all surgical maneuvers (►Fig. 3). Fig. 1 Aortocoronary fistula ligation. The image shows vascular permeability of the fistula, clearly demonstrated with the uptake of indocyanine green through it. Case Reports A high-definition camera (10 mm) (Stryker) equipped with a visible infrared light source (800 nm) was used. The laparoscopy camera used includes 3 CMOS chip technology, 1920  1080 p resolution, DVI, and S-VHS out- puts and interval of 1/60 (1/50)-1/50000 seconds. Case 1 A 14-year-old girl presented with aortocoronary fistula, which caused a decreased coronary flow during diastole. Her clinical condition worsened during exercise. Right three- port (3 mm) thoracoscopy was performed in upright posi- tions. The fistulous tract was readily identified and dissected on arrival at the right atrium. The presence of this rare vascular anomaly was confirmed by fluorescence by immediate injection of ICG (dose of 0.2 mg/kg), allowing better visualization and secure ligature (►Fig. 1). The current use of new techniques has allowed the recent introduction of indocyanine green (ICG), which has facili- tated the approach and the prevention of intraoperative complications in adults. It provides greater clarity and depth image visualization and reduces surgical time.1 Regarding cholecystectomy, it helps to better identify the bile duct anatomy, and in case of urological or oncological surgery, it allows to define the vascular anatomy, reducing the number of iatrogenic lesions2 TheexperiencewiththeuseofICGfluorescenceinadultshas shown multiple applications in recent years (colorectal, vas- cular, hepatobiliary, or tumor surgery)3; however, the experi- ence and bibliography described in pediatric cases are specific. We present our experience in different laparoscopic pro- ceduresperformed inchildren using ICGfluorescence imaging. TheexperiencewiththeuseofICGfluorescenceinadultshas shown multiple applications in recent years (colorectal, vas- cular, hepatobiliary, or tumor surgery)3; however, the experi- ence and bibliography described in pediatric cases are specific. Introduction The ENV (endoscopic near-infrared visualization) mode is used as a light source. Since the 1980s, minimally invasive surgery has provided technological advances in different areas of surgery. European Journal of Pediatric Surgery Reports Vol. 7 No. 1/2019 Fluorescence Use in Pediatric Laparoscopy Fernández-Bautista et al. Fluorescence Use in Pediatric Laparoscopy Fernández-Bautista et al. e45 Fluorescence Use in Pediatric Laparoscopy Fernández-Bautista et al. e45 ICG has an exclusively biliary excretion; therefore, its most logical application in the visualization of biliary tree anatomy during laparoscopic cholecystectomy,2 as shown in our case. After injection of ICG, the cystic artery could be initiallyobserved, and 15 minutes later, the common hepatic, common bile duct, and cystic duct were identified. In addi- tion, this allowed better visualization and anatomical dis- section, avoiding injury to the biliary tree. This technique also avoids performing intraoperative cholangiography when bile duct injury is suspected during the procedure.4 Fig. 3 Cholecystectomy. Thanks to the fluorescence, contrast uptake can be observed initially in the cystic artery (A) and later in the cystic duct (C). In the image, we are in a late phase of fluorescence since both structures can be visualized. ICG has many other applications already described in the literature; it allows identification of sentinel node in breast tumors, melanoma, and prostate cancer among others. It also facilitates lymphadenectomy in tumors with lymphatic spread by local injection.5 Fig. 3 Cholecystectomy. Thanks to the fluorescence, contrast uptake can be observed initially in the cystic artery (A) and later in the cystic duct (C). In the image, we are in a late phase of fluorescence since both structures can be visualized. In colorectal surgery, it facilitates intestinal resections and is used to verify the adequate vascularization of the intestinal anastomoses, demonstrating a lower rate of post- operative complications.6,7 Fig. 4 Nephrectomy. The image shows the renal artery (A) and periureteral vessels (U). Without fluorescence, the differentiation between the ureter and the vessels is difficult. Thanks to the fluor- escence, we can identify them more easily since the ureter does not present contrast uptake. Other applications have been described in surgery, such as liver resections, nephrectomies, and splenectomies.8,9 In summary, ICG images are recommended for interventions in which visualization of the vascular anatomy is necessary to differentiate between anatomical and vascular var- iants,3,10 as describe in our series of patients. The ICG imaging system seems to be simple and safe. Its application in adult surgery is wide and contrasted. The ability to visualize the vascular structures or the bile duct anatomy allows us to approach laparoscopic techniques of different complexities with greater safety for the patient. We have verified its use in children. Fluorescence Use in Pediatric Laparoscopy Fernández-Bautista et al. Larger and more specific studies are needed to confirm its applicability, expand its indications, and address its advantages and disadvantages. Fig. 4 Nephrectomy. The image shows the renal artery (A) and periureteral vessels (U). Without fluorescence, the differentiation between the ureter and the vessels is difficult. Thanks to the fluor- escence, we can identify them more easily since the ureter does not present contrast uptake. Conflict of Interest None. Conflict of Interest None. vascularization of the ureter. This technique definitively facilitated safe dissection of the renal hilum (►Fig. 4). In all cases, we initially administrated ICG dye through a peripheral venous access at a standard dose of 0.2 mg/kg. References No adverse effects were present during or after IV ICG injections. 1 Boni L, David G, Mangano A, et al. Clinical applications of indocyanine green (ICG) enhanced fluorescence in laparoscopic surgery. Surg Endosc 2015;29(07):2046–2055 1 Boni L, David G, Mangano A, et al. Clinical applications of indocyanine green (ICG) enhanced fluorescence in laparoscopic surgery. Surg Endosc 2015;29(07):2046–2055 All patients were observed for 30 minutes to 1 hour in the recovery room, except the patient with aortocoronary fistula who was in the pediatric intensive care unit overnight. 2 Hiwatashi K, Okumura H, Setoyama T, et al. Evaluation of laparo- scopic cholecystectomy using indocyanine green cholangiogra- phy including cholecystitis: a retrospective study. Medicine (Baltimore) 2018;97(30):e11654 2 Hiwatashi K, Okumura H, Setoyama T, et al. Evaluation of laparo- scopic cholecystectomy using indocyanine green cholangiogra- phy including cholecystitis: a retrospective study. Medicine (Baltimore) 2018;97(30):e11654 3 Ueno M, Hayami S, Sonomura T, et al. Indocyanine green fluor- escence imaging techniques and interventional radiology during laparoscopic anatomical liver resection (with video). Surg Endosc 2018;32(02):1051–1055 European Journal of Pediatric Surgery Reports Vol. 7 No. 1/2019 Cases 4 and 5 Two children aged 3 and 6 years, respectively, had steroid- resistant hypertension and renal failure. Nephrectomy was indicated in each of them, which was performed by retro- peritoneal laparoscopy. In both cases, intraoperative injec- tion of indocyanine dye allowed renal vascular anatomy to be identified with certainty, showing the peripheral Fig. 1 Aortocoronary fistula ligation. The image shows vascular permeability of the fistula, clearly demonstrated with the uptake of indocyanine green through it. Fig. 2 Ligation of spermatic vessels in varicocele. After the injection of the contrast, the vessels are filled (arterial and venous) and its correct ligature is verified, thanks to the infrared light of the fluorescence that indicates the vascular tree. Fig. 2 Ligation of spermatic vessels in varicocele. After the injection of the contrast, the vessels are filled (arterial and venous) and its correct ligature is verified, thanks to the infrared light of the fluorescence that indicates the vascular tree. European Journal of Pediatric Surgery Reports Vol. 7 No. 1/2019 9 Numanoglu A, Millar AJ. Necrotizing enterocolitis: early conven- tional and fluorescein laparoscopic assessment. J Pediatr Surg 2011;46(02):348–351 10 Schlottmann F, Patti MG. Evaluation of gastric conduit perfusion during esophagectomy with indocyanine green fluorescence imaging. J Laparoendosc Adv Surg Tech A 2017;27(12): 1305–1308 7 Ioannidis A, Wexner SD. Role of indocyanine green fluorescence imaging in preventing anastomotic leak in colorectal surgery: what lies ahead? Dis Colon Rectum 2018;61(11):1243–1244 8 Hong SK, Suh KS, Kim HS, et al. Pediatric living donor liver transplantation using a monosegment procured by pure 3D laparoscopic left lateral sectionectomy and in situ reduction. J Gastrointest Surg 2018;22(06):1135–1136 7 Ioannidis A, Wexner SD. Role of indocyanine green fluorescence imaging in preventing anastomotic leak in colorectal surgery: what lies ahead? Dis Colon Rectum 2018;61(11):1243–1244 European Journal of Pediatric Surgery Reports Vol. 7 No. 1/2019 ( ) 8 Hong SK, Suh KS, Kim HS, et al. Pediatric living donor liver transplantation using a monosegment procured by pure 3D laparoscopic left lateral sectionectomy and in situ reduction. J Gastrointest Surg 2018;22(06):1135 1136 Discussion ICG is an anionic molecule that is soluble in water, with a molecular mass of 776 daltons. After IV injection, ICG binds rapidlytoplasmaproteins,especiallytolipoproteins(albumin). Under near-infrared light, the released fluorescence can be detected using a specifically designed camera.1 ICG is an anionic molecule that is soluble in water, with a molecular mass of 776 daltons. After IV injection, ICG binds rapidlytoplasmaproteins,especiallytolipoproteins(albumin). 4 Mattone E, Latteri S, Teodoro M, et al. Dystopic retrohepatic gall- bladder and cholecysto-choledocho lithiasis: the rendez-vous and indocyanine green fluorescence. Clin Case Rep 2018;6(03):522–526 Under near-infrared light, the released fluorescence can be detected using a specifically designed camera.1 5 Papadia A, Buda A, Gasparri ML, et al. The impact of different doses of indocyanine green on the sentinel lymph-node mapping in early stage endometrial cancer. J Cancer Res Clin Oncol 2018;144 (11):2187–2191 Not every laparoscopic equipment includes or is compa- tible for usage of an infrared light source, nor all equipment have the same technology for doing that. 6 Son GM, Kwon MS, Kim Y, Kim J, Kim SH, Lee JW. Quantitative analysis of colon perfusion pattern using indocyanine green (ICG) angiography in laparoscopic colorectal surgery. Surg Endosc 2019;33(05):1640–1649 We advise the use of devices that allow a vision with gray- scale functionality compared with those that only have black-and-white vision. European Journal of Pediatric Surgery Reports Vol. 7 No. 1/2019 Fluorescence Use in Pediatric Laparoscopy Fernández-Bautista et al. e46 Fluorescence Use in Pediatric Laparoscopy Fernández-Bautista et al. e46 Fluorescence Use in Pediatric Laparoscopy Fernández-Bautista et al. e46
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<i>In-situ</i> tensile test under microtomography to characterize mechanical behavior of ethmoid bone: a preliminary study
Computer methods in biomechanics and biomedical engineering
2,020
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1,944
In-situ tensile test under microtomography to characterize mechanical behavior of ethmoid bone: a preliminary study In-situ tensile test under microtomography to characterize mechanical behavior of ethmoid bone: a preliminary study Vincent Serantoni, Noura Faraj, Gérard Subsol, Eric Rondet, Léa Ollier, Guillaume Captier, Franck Jourdan, Valentin Favier Vincent Serantoni, Noura Faraj, Gérard Subsol, Eric Rondet, Léa Ollier, Guillaume Captier, Franck Jourdan, Valentin Favier To cite this version: Vincent Serantoni, Noura Faraj, Gérard Subsol, Eric Rondet, Léa Ollier, et al.. In-situ tensile test under microtomography to characterize mechanical behavior of ethmoid bone: a preliminary study. Computer Methods in Biomechanics and Biomedical Engineering, 2020, 23 (sup1), pp.S279-S281. ￿10.1080/10255842.2020.1816292￿. ￿hal-03345431￿ Distributed under a Creative Commons Attribution 4.0 International License 2.3. Analysis plan Ultimate stress at fracture and Young’s modulus (E) were evaluated using formulae of linear elasticity: ru ¼ Fu S (1) r ¼ Ee (2) (1) (2) In-situ tensile test under microtomography to characterize mechanical behavior of ethmoid bone: a preliminary study displacement accuracy is 0.01 mm. Bone sample had a random geometry and thin walls (approx. 100 mm) which prevents from obtaining standard shapes for tensile test. Moreover, the small size and fragility of the samples, required to design a dedicated attach- ment device for the transport and sealing to the load- ing cell (Figure 1). Fixing was done with common glue between the two clamps. Tensile test was carried out until bone fracture, originally intended before 80 N. A micro-CT scan of a region comprising the whole sample and clamps was performed at each step of 20 N. Voxel size was set to 2,75 mm isotropically. displacement accuracy is 0.01 mm. Bone sample had a random geometry and thin walls (approx. 100 mm) which prevents from obtaining standard shapes for tensile test. Moreover, the small size and fragility of the samples, required to design a dedicated attach- ment device for the transport and sealing to the load- ing cell (Figure 1). Fixing was done with common glue between the two clamps. Tensile test was carried out until bone fracture, originally intended before 80 N. A micro-CT scan of a region comprising the whole sample and clamps was performed at each step of 20 N. Voxel size was set to 2,75 mm isotropically. V. Serantonia, N. Farajb, G. Subsolb, E. Rondetc, L. Ollierc, G. Captierd, F. Jourdana and V. Favierd V. Serantonia, N. Farajb, G. Subsolb, E. Rondetc, L. Ollierc, G. Captierd, F. Jourdana and V. Favierd aLaboratoire de Mecanique et Genie Civil (LMGC), Research- Team Biotic, University of Montpellier, CNRS, Montpellier, France; bLaboratoire d’Informatique, Robotique et Microelectronique (LIRMM), Research-Team ICAR, University of Montpellier, CNRS, Montpellier, France; cUMR QUALISUD, University of Montpellier, CIRAD, Montpellier, France; dAide a la Decision Medicale Personnalisee, EA2415, Departement MIPS, Universite Montpellier, Montpellier, France 2.1. Bone samples Bone samples were extracted from a skull of the laboratory of anatomy of Montpellier, and preserved frozen without any chemical fixation. 1. Introduction (2) (2) Mechanical properties of the ethmoid bone are not well understood due to its complex geometry (referred as a ‘labyrinth’), and its deep location in the skull base. However, it is of particular interest for sur- geons to appraise the force range they can apply dur- ing endoscopic procedures and know what kind of haptic feedback should be produced by a simulation device in order to be realistic for trainees (Favier et al. 2019). Ethmoid bone lamellae have a mainly cortical structure (Berger et al. 2013) which has no equivalent in the human body. The aim of this study was to describe a protocol of in-situ tensile test under microtomography (micro-CT) to characterize ethmoid bone behavior. where r represent the stress (Pa), F the load in (N), S the section area (m2), E is the Young’s Modulus (Pa), and e the strain (no unit). Subscript u stand for ultimate at fracture. Section area and displacement of some landmarks were assessed using 3D micro-CT images at each step by using ImageJ# software. 3. Results and discussion The largest dimensions of the bone samples were 8  7  1 mm. Complete load evolution during the tensile test is shown in Figure 2. Each micro-CT scan lasted 2h30; therefore, the total experiment lasted 8 to 10 hours. As a consequence, a creep phenomenon seems to appear during CT scanning, causing relax- ation which is visible in the curve. The tensile test was stopped at 80 N and, because the bone was not fractured yet, the tensile test was extended above 80 N several hours after the last scan, leading to some relaxation at 80 N higher than previous steps. The bone section area, where fracture occurs, was close to 5 mm2 and the load during fracture was about 85 N. Using Equation 1, the ultimate stress at failure was estimated close to 17 MPa. Fracture ignition (micro cracks) was observed for a strain of 0.96% and a com- plete fracture was observed after a strain of 1.25% (Figure 2). It was possible to estimate the extension of  2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.  2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. HAL Id: hal-03345431 https://hal.science/hal-03345431v1 Submitted on 15 Sep 2021 L’archive ouverte pluridisciplinaire HAL, est destinée au dépôt et à la diffusion de documents scientifiques de niveau recherche, publiés ou non, émanant des établissements d’enseignement et de recherche français ou étrangers, des laboratoires publics ou privés. HAL is a multi-disciplinary open access archive for the deposit and dissemination of sci- entific research documents, whether they are pub- lished or not. The documents may come from teaching and research institutions in France or abroad, or from public or private research centers. Distributed under a Creative Commons Attribution 4.0 International License COMPUTER METHODS IN BIOMECHANICS AND BIOMEDICAL ENGINEERING 2020, VOL. 23, NO. S1, S279–S281 https://doi.org/10.1080/10255842.2020.1816292 COMPUTER METHODS IN BIOMECHANICS AND BIOMEDICAL ENGINEERING 2020, VOL. 23, NO. S1, S279–S281 https://doi.org/10.1080/10255842.2020.1816292 In-situ tensile test under microtomography to characterize mechanical behavior of ethmoid bone: a preliminary study In-situ tensile test under microtomography to characterize mechanical behavior of ethmoid bone: a preliminary study Disclosure statement No potential conflict of interest was reported by the authors. 4. Conclusions the bone between the load-free CT scan and the 80 N CT scan by tracking some geometrical landmarks, easy to locate. The extension of the bone was eval- uated at 38.5 lm, and the initial distance between the clamp was approximately 5 mm, leading to an estima- tion of E at 2.08 Gpa (Eq. 2). In-situ tensile test under microtomography was used to characterize mechanical behavior of ethmoid bone. These preliminary encouraging results allow us to propose the following protocol: use of frozen bones, tensile test with a micro-CT acquisition at each 20 N step, estimation of displacement based on 3D images. The continuation of the study, with the coupling of automatic tracking of landmarks and Finite Element Analysis, will allow us to gain more detailed access to the mechanical properties of these types of bone. Cortical bone is stiffer than trabecular bone, mainly due to a higher density (Helgason et al. 2008). For cortical bones, several studies revealed a E range from 10 to 20 GPa under tensile tests (Hoffler et al. 2000; Nyman et al. 2006) whereas our first result seems much smaller. However, in the anterior skull base, a random pattern of osteons was reported (Dempster 1967) which may indicate that the ethmoid bone is not comparable to long bones were osteons are consistently oriented according to their long axis (Boruah et al. 2017). 2.2. In-situ tensile test under micro-CT A Brucker# SkyScan 1272 with the material testing stage was used to perform both micro-CT scans and tensile tests. The load force cell can reach values of up to 440 N with an accuracy of ± 4.4 N. The S280 ABSTRACT Figure 2. Load evolution during tensile test. Dotted lines indi- cated were scans occurred. Point A indicates crack ignition and B complete failure. Figure 1. Bone samples and micro-CT loading cell. Figure 2. Load evolution during tensile test. Dotted lines indi- cated were scans occurred. Point A indicates crack ignition and B complete failure. Figure 1. Bone samples and micro-CT loading cell. Acknowledgements Authors want to acknowledge Mr. Quentin Michelas for its preliminary work and the anatomy laboratory of Montpellier University and Mrs. Maud Moulin for technical support. This work was partly funded by Montpellier University of Excellence (MUSE) – Call for project ‘TAKE OFF’. In upcoming works, other ethmoid bone samples will be tested and a complete 3D geometrical model of bones will be reconstructed from micro-CT scans. This model will be used in a Finite Element Analysis framework to corroborate our first results. An inverse method could provide better estimations of the E, Poisson’s coefficient and ultimate stress at failure. Furthermore, it will be interesting to associate to these tests a study of ethmoid bone microstructure. KEYWORDS Ethmoid; cortical bone; in-situ tensile test; microtomography; mechanical behavior References Berger G, Eviatar E, Kogan T, Landsberg R. 2013. The nor- mal uncinate process: histology and clinical relevance. Eur Arch Otorhinolaryngol. 270(3):959–964. This study admits some limitations. There is only one exploitable test for the moment, which requires that the results should be considered with caution. It is also necessary to consider the conditions under which the tests are carried out: in the open air and over a long period of time, thus drying out the sam- ples which normally become ‘more brittle’ (Nyman et al. 2006). It should also be noted that the Young’s modulus was estimated under the assumption of pure tension, which is relatively coarse, given the geometry of the sample. Boruah S, Subit DL, Paskoff GR, Shender BS, Crandall JR, Salzar RS. 2017. Influence of bone microstructure on the mechanical properties of skull cortical bone: a combined experimental and computational approach. J Mech Behav Biomed Mater. 65:688–704. Dempster WT. 1967. Correlation of types of cortical grain structure with architectural features of the human skull. Am J Anat. 120(1):7–31. Favier V, Gallet P, Subsol G, Captier G. 2019. Understanding the biomechanical properties of skull base tissues is essential for the future of virtual reality COMPUTER METHODS IN BIOMECHANICS AND BIOMEDICAL ENGINEERING vincent.serantoni@gmail.com KEYWORDS Ethmoid; cortical bone; in-situ tensile test; microtomography; mechanical behavior vincent.serantoni@gmail.com endoscopic sinus and skull base surgery simulators. Clin Exp Otorhinolaryngol. 12(2):231–232. COMPUTER METHODS IN BIOMECHANICS AND BIOMEDICAL ENGINEERING S281 endoscopic sinus and skull base surgery simulators. Clin Exp Otorhinolaryngol. 12(2):231–232. Nyman JS, Roy A, Shen X, Acuna RL, Tyler JH, Wang X. 2006. The influence of water removal on the strength and toughness of cortical bone. J Biomech. 39(5): 931–938. Nyman JS, Roy A, Shen X, Acuna RL, Tyler JH, Wang X. 2006. The influence of water removal on the strength and toughness of cortical bone. J Biomech. 39(5): 931–938. Nyman JS, Roy A, Shen X, Acuna RL, Tyler JH, Wang X. 2006. The influence of water removal on the strength and toughness of cortical bone. J Biomech. 39(5): 931–938. Helgason B, Perilli E, Schileo E, Taddei F, Brynjolfsson S, Viceconti M. 2008. Mathematical relationships between bone density and mechanical properties: a literature review. Clin Biomech (Bristol, Avon). 23(2):135–146. Hoffler CE, Moore KE, Kozloff K, Zysset PK, Brown MB, Goldstein SA. 2000. Heterogeneity of bone lamellar-level elastic moduli. Bone. 26(6):603–609. vincent.serantoni@gmail.com
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Patient experiences in retinal trials: a cross-sectional study
BMC ophthalmology
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6,476
Abstract Background: Patient-centered care recognizes the obligation to understand and meet patient’s expectations. An individual’s satisfaction has been found to affect health-related decisions and treatment-related behaviours, which in turn affect medical compliance, follow-up, the success of treatment and the appropriate use of services. We studied the expectations, experiences and satisfaction of patients who participated in clinical trials for retinal diseases at the Sydney Eye Hospital. Methods: The study was undertaken at the research clinic of the major public quaternary eye hospital in New South Wales, Australia. A 37-question survey was conducted on patients enrolled in or who had finished a clinical trial for macular disease in the 12 months preceding this study in November 2012. Patient satisfaction was assessed using close-ended, multiple choice questions. First, the decision making process for entering into the clinical trial was evaluated. Then the level of patient understanding and experience during the study was assessed. Finally, there was a series of questions to gauge the participants’ perception of trial outcomes and overall impression gained from the experience. Results: Eighty patients completed the questionnaire. Overall patient satisfaction was high with the majority of patients stating they would recommend participation in a retinal clinical trial (94 %) and participate in a subsequent trial (78 %). Most patients rated themselves as the most important factor in making the decision to join a trial. Patients felt well informed and expectations were generally felt to be met, however 14 % did not believe that they could withdraw from the study voluntarily. The most common reasons for trial participation were to contribute to medical science and to have improved treatment outcomes. Conclusions: We found that patients generally found participation in retinal clinical trials to be a positive experience. Factors contributing to dissatisfaction mainly related to inconvenience experienced by transportation and waiting times. We also found that patients felt well informed about the study, but some did not have a complete understanding of their rights, which had been communicated to them when they entered the study. There were both altruistic and self-motivated reasons behind patients’ decisions to join a retinal trial. Keywords: Patient satisfaction, Experiences, Clinical trials, Retinal, Macular Moreover, an individual’s satisfaction has been found to affect health-related decisions and treatment related be- haviors, which in turn affect medical compliance, follow- up, the success of treatment and the appropriate use of service [4–7]. Abstract Previous surveys suggest that patients positively view their experience of ophthalmology clinics [8–12]. Patient satisfaction has been linked to participa- tion in decision-making, clinicians’ communicative be- havior, treatment outcome and patients’ expectations regarding psychosocial support as well as therapeutic lis- tening [13–20]. However, this has not been examined © 2015 Au et al. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. The Creative Commons Public Domain Dedication waiver (http:// creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. Au et al. BMC Ophthalmology (2015) 15:80 DOI 10.1186/s12886-015-0071-6 Au et al. BMC Ophthalmology (2015) 15:80 DOI 10.1186/s12886-015-0071-6 Patient experiences in retinal trials: a cross-sectional study Cheryl Pui-Yan Au1,2, Nicole Fardell2, Maria Williams3, Samantha Fraser-Bell3, Anna Campain3 and Mark Gillies2,3* Cheryl Pui-Yan Au1,2, Nicole Fardell2, Maria Williams3, Samantha Fraser-Bell3, Anna Campain3 an * Correspondence: mark.gillies@sydney.edu.au 2Sydney Medical School, University of Sydney, Sydney, Australia 3Macular Research Group, Room 116, Level 1, Save Sight Institute, Campus of Sydney Eye Hospital, 8 Macquarie St, Sydney, NSW 2000, Australia Full list of author information is available at the end of the article Background Clinical trials are considered the ‘gold standard’ by which clinicians decide if treatments are safe and effect- ive. Patient satisfaction, defined as the fulfilment of ex- pectations and needs, incorporates patients’ perceptions and preferences when evaluating the success of medical treatments and healthcare delivery systems [1–3]. * Correspondence: mark.gillies@sydney.edu.au 2Sydney Medical School, University of Sydney, Sydney, Australia 3Macular Research Group, Room 116, Level 1, Save Sight Institute, Campus of Sydney Eye Hospital, 8 Macquarie St, Sydney, NSW 2000, Australia Full list of author information is available at the end of the article Au et al. BMC Ophthalmology (2015) 15:80 Page 2 of 7 authors of the present study after a literature review of previous surveys [8–20], and after discussion with medical, nursing and paramedical staff, to ensure face validity. The questions were chosen to represent a wide range of areas of concern that might affect patient satis- faction in retinal clinical trials. The development of this questionnaire was guided by the evidence base for selec- tion of rating scales [25–27]. Rating scales had a simple question format, with categories that included frequency, severity and global ratings. These rating scale categories were presented in a clear progression and were concep- tually exhaustive, using a Likert scale to scale responses allowing for one response [28, 29]. For the small number of questions that allowed for multiple responses, the per- centage of each response was calculated by dividing the total number of each response by 80. Responses left blank were censored as missing data. specifically in the context of retinal clinical trials, which may be more labour intensive than interventions for other medical conditions. The objective of our study was to understand what motivated patients to participate in clinical trials for ret- inal disease, and to determine if the experience was a satisfactory one. This is important, as patient satisfaction is linked to patient compliance with therapy [21, 22], which is necessary for optimal long term outcomes, as well as increased number of hospital recommendations by patients to others and improved reputation [23, 24] We anticipated that the information gained from this study might identify ways to improve the clinical trial process and aid in patient recruitment. Information gathered about level of understanding and decision- making process is also relevant to understanding patient consent. Survey administration Research staff identified eligible patients upon their arrival at the clinic and gave them an information sheet on the study along with the questionnaire. The surveys were either self completed or were completed with the help of an accompanying friend, family member or inter- preter. Large font versions of the questionnaire were available for those who were visually impaired. The sur- vey was filled out anonymously with only generic demo- graphic data collected. Patients returned their completed surveys to a sealed box in the clinic area. Reasons for participating in the trial varied, but the two most popular responses were that participants ‘wanted to contribute to medical science’ and they wanted their ‘eyes to be more closely monitored’ (Fig. 1). None of the participants felt they had been pressured to join or were unable to ascribe a reason for joining. A total of 246 responses were obtained for this question. Decision-making process and entry into the trial g p y The majority of patients (88 %) stated that their main source of information for entering the trial was from medical staff (doctors and nurses), and 96 % of patients thought they received adequate information about the trial. More than half of the patients (55 %) stated that they themselves were the most influential in their deci- sions to join the trial, while 30 % thought that doctors were the most influential. Most patients (84 %) made their decisions to participate within one day. Description of the clinical trials Participants in 14 retinal clinical trials were eligible for the study. Most of the retinal clinical trials compared the outcomes of two different drugs, although some compared the effect of a drug versus a placebo. A full description of each trial is provided in Additional file 2. The survey was completed by 96 % of the eligible sub- jects approached. Of the three patients who declined the survey, two could not read English and one had poor vi- sion and did not have an accompanying carer. Of the 80 participants, approximately half (53 %) were male, with the median age within the 61 and 70 age selection range. Half the patients surveyed (51 %) were born outside Australia and English was a second language for 30 % of participants. Approximately a third (36 %) of the 80 par- ticipants had been in a previous retinal trial at the Sydney Eye Hospital. This was a cross-sectional study of all patients currently enrolled in, and those who had completed clinical trials for retinal disease in the preceding 12 months at the start of the study in November 2012, in the Macular Research clinics at the Sydney Eye Hospital. The Sydney Eye Hospital is a quaternary referral unit located within the Central Business District of Sydney. Participants were available from 14 retinal clinical trials. Eighty con- secutive patients who were attending the research clinics were recruited for this exploratory, non-comparative study. Ethics The study was approved by the Human Research Ethics Committees of Royal Prince Alfred Hospital (LNR/12/ RPAH/382). Patients read the participant consent form and verbal consent was obtained by the research staff. Participation was voluntary. Perceived benefits and problems with trial participation Perceived benefits and problems with trial participation Patients were also allowed multiple responses when de- scribing perceived benefits of trial participation. The ma- jority of patients (76 %) stated the goal of participation within their particular clinical trial was to improve med- ical care for future patients, half (50 %) described partici- pation was to benefit themselves and a third (35 %) also felt that the goal was to give doctors experience with a new drug. Ninety percent of patients agreed that the trial provided important information to medical science. The vast majority of patients (95 %) agreed that staff kept them up to date on the study progress. Table 1 Trial outcomes from the patients’ perspectives Question Response n (%) How did you benefit from participating in the trial? (N = 187 responses) More frequent contact with my doctor 33 (41 %) Free medical care and services 35 (44 %) Remediationa 12 (15 %) More knowledge about my eye condition 68 (85 %) Improved health 23 (29 %) Interaction with others with my condition 11 (14 %) Other 5 (6 %) How have you felt since having the treatment? Much better 32 (40 %) Somewhat better 18 (23 %) About the same 15 (19 %) Somewhat worse 3 (4 %) Much worse 0 (0 %) Have you experienced any side effects from the treatment? Yesb 11 (14 %) No 50 (63 %) Unsure 5 (6 %) aRemediation refers to correction of visual health as defined by the specific retinal trial bSide effects listed by patients included pain, increased appetite, hair hanging in eye, headaches, cataract, blurred vision, smell, burning and gritty sensation in eye, small tingles in eye, and glaucoma Table 1 Trial outcomes from the patients’ perspectives Question Response n (%) When asked about problems with trial participation, a sizeable minority of patients (24 %) thought too much time was spent at the clinic. Other problems highlighted included transport difficulties (13 %), parking problems (8 %), unclear directions to the appointment location (3 %), difficulty getting off work for appointments (3 %) and changes of clinical staff (1 %). Fourteen percent of patients thought they could not withdraw from the trial, which was incorrect. The majority of patients did not think there were too many follow up visits (74 %) or forms to complete (78 %). Data analysis Th f The survey format consisted of a 37 item questionnaire (Additional file 1). Questions were formulated by the Page 3 of 7 Au et al. BMC Ophthalmology (2015) 15:80 Fig. 1 Reasons for joining a retinal clinical trial at the Sydney Eye Hospital Fig. 1 Reasons for joining a retinal clinical trial at the Sydney Eye Hospital Trial outcomes S bj i bSide effects listed by patients included pain, increased appetite, hair hanging in eye, headaches, cataract, blurred vision, smell, burning and gritty sensation in eye, small tingles in eye, and glaucoma Subjective outcomes of participation in the clinical trials were generally positive, as outlined in Table 1. Sixty Page 4 of 7 Au et al. BMC Ophthalmology (2015) 15:80 Table 2 Overall impression of the retinal clinical trial Question Response n (%) How important do you feel taking part in this trial is to your condition? Very important 68 (85 %) Fairly important 5 (6.25 %) Slightly important 3 (3.75 %) Not at all important 2 (2.5 %) Missing data 2 (2.5 %) Would you recommend participation in this trial? Yes 75 (93.75 %) No 2 (2.5 %) Unsure 2 (2.5 %) Missing data 1 (1.25 %) Volunteer for another trial? Yes 62 (77.5 %) No 3 (3.75 %) Unsure 14 (17.5 %) My expectations of joining the trial were Met 50 (62.5 %) Somewhat met 18 (22.5 %) Somewhat unmet 2 (2.5 %) Unmet 2 (2.5 %) Unsure 3 (3.75 %) Missing data 5 (6.25 %) How would you rate the overall quality of care and services provided in the clinical trial? Excellent 59 (73.75 %) Good 16 (20 %) Fair 1 (1.25 %) Poor 0 (0 %) Missing data 4 (5 %) Would you return to the Sydney Eye Hospital should the need arise? Yes 73 (91.25 %) No 0 (0 %) Unsure 4 (5 %) Missing data 3 (3.75 %) three percent of participants stated that they felt much or somewhat better as a result of participating in the study while only 4 % felt somewhat worse. Overall patient impression of the clinical trial Table 2 outlines patients’ overall impression of their clin- ical trials, which was mostly positive. The overwhelming majority of patients felt that taking part in the trial was important for their condition and would recommend participation to another person. Relationship with medical staff Overall, patients had a positive impression of medical staff: 93 % thought staff always treated them with cour- tesy and respect and 96 % thought staff were always helpful. From the patient’s perspective, clinical staff always (86 %) or usually (9 %) worked well together as a team. Seventy six percent of patients always felt valued and appreciated as a patient, while a further 15 % thought that this was the case usually. Eighty six percent of patients never had any doubts about the ability of their treating doctors, although 6 % sometimes had doubts and 2 % usually had doubts. However, no patient always had doubts about their doctors’ abilities. Since enrolment in a clinical trial, the patient’s relationship with their doctor improved in over half (58 %) of cases, in 38 % the relationship remained unchanged and no patient described trial participation worsening their rela- tionship with the treating medical team. Discussion l Increasingly, participant experience studies are under- taken as part of clinical trials to improve recruitment, as well as the delivery and conduct of future trials [30]. Most of these studies, not in the field of ophthalmology, have focused on patients’ understandings and experi- ences and how these might influence recruitment, re- tention and adherence to the investigated intervention [31–34]. Ophthalmology patient satisfaction studies have mainly been in the areas of cataract and refractive surgeries [8–11], as well as in for oculoplastics and glaucoma surgeries [12, 35]. Our study provides insight into patient experiences and satisfaction in clinical trials in the context of translational retinal research. good trial recruitment and retention, an understanding of what makes the experience satisfactory for the patient is likely to be helpful. To address this need, our study in- vestigated the reasons for trial participation, expectations and measures of satisfaction. In a study including inpa- tients and outpatients after cataract surgery from three facilities, Nijkamp et al. found that satisfaction with regard to the quality of care, judgments about the counseling, and meeting patients’ preoperative expectation concerning the medical outcome were predictors of overall patient satisfaction [14]. Predictors were consistent among the in- vestigated settings and overall satisfaction scores also did not significantly differ. Jackson et al. also reported that understanding and meeting initial expectations is an im- portant component of achieving a satisfactory patient ex- perience in a general medicine walk-in clinic [36]. In this study we surveyed 80 consecutive patients par- ticipating in various clinical trials for retinal diseases. We found that participants generally found their experi- ence in retinal clinical trials to be positive and satisfying. These findings are reassuringly consistent with other studies of patient satisfaction within the clinical trial en- vironment in ophthalmology as well as other fields of medicine [9, 13–15, 32, 33]. We examined the decision making process to enter clinical trials of retinal disease in terms of patient Recruiting and maintaining participants in clinical tri- als is vital and often challenging. In order to achieve Au et al. BMC Ophthalmology (2015) 15:80 Au et al. BMC Ophthalmology (2015) 15:80 Page 5 of 7 Another aspect of assessing participant satisfaction was the patient response to services and caregivers. We found that the vast majority of patients within the retinal research clinics studies were very satisfied with services and staff, with 74 % rating them as ‘excellent’. Discussion l Previous studies have consistently demonstrated the importance of communication between patients and their caregivers and the value of providing relevant information such as regarding operative processes or diagnostic tests [16, 38–43]. Our study corroborated these findings, with patient interaction with staff likely playing an important role in achieving overall high satisfaction. The impact of study participation on relationship with staff was also demonstrated by the fact that 58 % of patients thought their relationship with their doctors improved through participating in the clinical trial. Further qualitative re- search may be warranted to elucidate the specific im- portant aspects of this relationship with patients. A qualitative study using focus groups by Dawn et al. iden- tified 6 areas of expectations for eye care that were im- portant to patients: honesty, information about diagnosis and prognosis, explanation in clear language, ophthal- mologists’ experience and reputation, empathy and lis- tening and addressing concerns [19]. understanding and reasoning. We found that the pri- mary source of trial information came from medical staff, with the majority of patients (96 %) feeling that ad- equate information had been given to them. This em- phasises that ophthalmologists and other clinical staff have an important role to increase patient participation in trials, since they are by far the primary source of in- formation about the study. However, most patients rated themselves as the most important factor in making the decision, with the decision usually made within 24 h; this emphasizes that recruitment in clinical trials should be patient-focussed with the amount and level of infor- mation geared appropriately towards patients. understanding and reasoning. We found that the pri- mary source of trial information came from medical staff, with the majority of patients (96 %) feeling that ad- equate information had been given to them. This em- phasises that ophthalmologists and other clinical staff have an important role to increase patient participation in trials, since they are by far the primary source of in- formation about the study. However, most patients rated themselves as the most important factor in making the decision, with the decision usually made within 24 h; this emphasizes that recruitment in clinical trials should be patient-focussed with the amount and level of infor- mation geared appropriately towards patients. It is noted that 14 % of patients did not feel they could withdraw from the study. Discussion l This is an inaccurate perception which demonstrates the potential for misunderstanding in the consent process, possibly resulting from language bar- riers and the use of lengthy consent documentation. Par- ticipants might have been more focused on the actual treatment and side effects or visit scheduling information and the decision making of whether to enter a clinical trial, and less on other issues such as withdrawing. The conduct of verbal consent, the conduct of the survey on site, and the signing of the consent for retinal studies all in one day may all be unintentional subtle sources of undue influence. Nevertheless, this highlights the im- portance of clearly explaining to patients their rights when entering the study as well as their obligations, and not ‘flooding’ patients with too much information simultaneously. g g We also sought to identify areas of dissatisfaction in order to understand if these could be addressed to im- prove the patient experience and whether these elements of dissatisfaction were related to the trial experience. The main problem identified was prolonged wait time in the clinic, transport and parking problems. Communica- tion and information provision to health consumers, es- pecially in relation to waiting times, have been shown to have positive effects on satisfaction levels, resulting in significant falls in complaint levels [44]. A discussion and briefing regarding wait times is indeed performed with patients in the clinics studied. While wait times remain a source of discontent, it is possible that the communication that takes place around these times mit- igates their impact on overall patient satisfaction, reflected in the fact that 93 % of patients remained will- ing to return to the public outpatient clinics at the con- clusion of the study. Further, patients did not feel their time was being generally wasted, as three-quarters of them did not think there were too many follow up visits or that there were too many forms to complete. The lat- ter may be because data collection was predominantly performed by study staff rather than patients. There were very few studies that asked patients to complete forms. We found that there were both strong altruistic and self-motivated reasons behind patients’ decision to par- ticipate in trials. The most popular responses as to why they participated in a clinical trial were ‘to assist medical science’ and ‘to have (their) condition more closely monitored’. Discussion l These findings were corroborated by mea- sures for patient satisfaction, with the most common benefit described by patients as increased knowledge of their particular medical condition. Other popular re- sponses were free medical care and services and in- creased contact with the treating team. Consistent with other studies, there appears to be a desire amongst a significant proportion of patients to feel actively involved in their care, expressed by a desire for greater knowledge and greater contact with staff [37]. This increased involvement can lead to improved patient outcomes as well as satisfaction. It is acknowl- edged that those who had volunteered for trials were more likely to have this desire for participation. In terms of advocating trial involvement, it can be seen from our study that those who joined largely described a desire for a greater sense of knowledge, involvement and fre- quency of care, and that expectations were largely satis- fied through the trial process. Access to the clinic was a major cause of patient dis- satisfaction. Since the hospital is a quaternary referral service, as is likely to be the case for other centres where clinical trials of retinal disease are performed, patients usually were not travelling from the immediate locality. Au et al. BMC Ophthalmology (2015) 15:80 Page 6 of 7 on the providers’ success at meeting health consumers’ values and expectations. The results of this study indicate that most patients were satisfied with their experiences and outcomes from participating in a retinal clinical trial at the Sydney Eye Hospital, despite dissatisfaction with some aspects of the clinical trial process and a small percentage of patients experiencing some side effects. Gaining a better understanding of patients’ expectations in ophthalmic clinical trials may help better guide efforts to educate patients, to reduce unreasonable expectations and, ultimately, to improve their experience. Sponsored clinical trials would have the means to pro- vide adequate reimbursement for travel and parking to the investigational site, but this may not be feasible for investigator initiated trials. The major limitations of this study are those inherent in cross-sectional, ‘self-reporting’ questionnaire surveys. Patients who are more satisfied with care are less likely to return questionnaires, thus potentially under- estimating satisfaction levels [45]. Despite this, the re- sponse rate of our survey was high at 96 %, with those few declining mainly citing language difficulties. Authors’ contributions CPA had full access to all the data in the study and takes responsibility for the integrity of the data and the accuracy of the data analysis. CPA contributed to the study design and acquisition of data, analysed the data and wrote and revised the manuscript. NF contributed to the study design and wrote the manuscript. MW contributed to the study design, coordinated data collection and reviewed and edited the manuscript. SF-B contributed to the study design and reviewed and edited the manuscript. AC contributed to the statistical analysis and edited the manuscript. MG designed the study, supervised data acquisition, contributed to the analysis and interpretation of data, the discussion and reviewed and edited the manuscript. All authors approve the final version to be published. Tendency for respondents to bias towards positive re- sponses and use acquiescent replies was minimized by adopting positively or negatively worded, specific ques- tions [25, 46, 47]. However, one question was con- structed with a positive bias: “How did you benefit from participating in the study?” This question did not offer a neutral or negative response option, and thus it was un- surprising that a high majority of respondents described this study as beneficial. This could have been avoided if a more vigorous question selection process had been undertaken, that would include multiple pilot tests, focus groups and interviews to enhance content validity [48, 49]. Other questions appropriately included the full range of response options. In addition, while the specific and limited range of responses allowable assisted in giv- ing a good overview of quantifiable data, further qualita- tive research would likely be of benefit to explore further patient views and level of understanding. It is conceded that if we had studied patients who were approached for participation in clinical trials rather than those who had already consented to join, we may well have found different responses to some questions. Acknowledgements h h ld l k The authors would like to thank all the study and clinical staff at Sydney Eye Hospital. This research is supported by the Save Sight Institute, Sydney Eye Hospital, Sydney, Australia. Discussion l Never- theless, we could not assess the differences in baseline or clinical characteristics between the responders and non- responders. Furthermore, there was the potential undue influence of patients being handed the survey by research staff and the expectation to complete it on site. A lower response rate might have been attained if the survey was not allowed to be completed on site, however this ap- proach would cause greater inconvenience to patients and would yield a much lower response rate. Another limitation of this study was that the distribution of pa- tients across the 14 retinal trials was not known, as we did not collect this information from the questionnaire. We confirmed that they were from at least one of the listed studies only. Our population was a consecutive sample and included patients from a number of different trials. Our clinics are not differentiated based on which clinical trials the patients are part of. Additional files Additional file 1: The study questionnaire. (DOCX 138 kb) Additional file 2: A brief description of each clinical trial. (DOCX 82 kb) Additional file 1: The study questionnaire. (DOCX 138 kb) Additional file 2: A brief description of each clinical trial. (DOCX 82 kb) References 1. Turnbull JE, Luther KM. Patient satisfaction report paves way to improved care. QRC Advisor. 1996;13(1):1–7. 1. Turnbull JE, Luther KM. Patient satisfaction report paves way to improved care. QRC Advisor. 1996;13(1):1–7. care. QRC Advisor. 1996;13(1):1–7. 2. Brody D, Miller S, Lerman C, Smith D, Caputo G. Patient perception of involvement in medical care: relationship to illness attitudes and outcomes. J Gen Intern Med. 1989;4:506–11. 3. Wright JG. Evaluating the outcome of treatment. Shouldn’t we be asking patients if they are better? J Clin Epidemiol. 2000;53(6):549–53. 4. Albrecht G, Hoogstraten J. Satisfaction as determination of compliance. Community Dent Oral Epidemiol. 1998;26:139–46. 5. McCracken LM, Klock A, Mingay KA. Assessment of satisfaction with treatment for chronic pain. J Pain Symptom Manage. 1997;14(5):292–9. 6. Taylor TR. Understanding the choices that patients make. J Am Board Fam Med. 2000;13(2):124–33. care. QRC Advisor. 1996;13(1):1 7. 2. Brody D, Miller S, Lerman C, Smith D, Caputo G. Patient perception of involvement in medical care: relationship to illness attitudes and outcomes. J Gen Intern Med. 1989;4:506–11. 3. Wright JG. Evaluating the outcome of treatment. Shouldn’t we be asking patients if they are better? J Clin Epidemiol. 2000;53(6):549–53. 4. Albrecht G, Hoogstraten J. Satisfaction as determination of compliance. Community Dent Oral Epidemiol. 1998;26:139–46. 5. McCracken LM, Klock A, Mingay KA. Assessment of satisfaction with treatment for chronic pain. J Pain Symptom Manage. 1997;14(5):292–9. 6. Taylor TR. Understanding the choices that patients make. J Am Board Fam Med. 2000;13(2):124–33. 2. Brody D, Miller S, Lerman C, Smith D, Caputo G. Patient perception of involvement in medical care: relationship to illness attitudes and outcomes. J Gen Intern Med. 1989;4:506–11. 3. Wright JG. Evaluating the outcome of treatment. Shouldn’t we be asking patients if they are better? J Clin Epidemiol. 2000;53(6):549–53. 4. Albrecht G, Hoogstraten J. Satisfaction as determination of compliance. Community Dent Oral Epidemiol. 1998;26:139–46. 5. McCracken LM, Klock A, Mingay KA. Assessment of satisfaction with treatment for chronic pain. J Pain Symptom Manage. 1997;14(5):292–9. 6. Taylor TR. Understanding the choices that patients make. J Am Board Fam Med. 2000;13(2):124–33. 7. Weaver M, Patrick DL, Markson LE, Martin D, Frederic I, Berger M. Issues in the measurement of satisfaction with treatment. Am J Manag Care. 1997;3(4):579–94. Competing interests h h d l h The authors declare that they have no competing interests. The authors declare that they have no competing interests. Author details 1D f 1Department of Ophthalmology, Westmead Hospital, Sydney, Australia. 2Sydney Medical School, University of Sydney, Sydney, Australia. 3Macular Research Group, Room 116, Level 1, Save Sight Institute, Campus of Sydney Eye Hospital, 8 Macquarie St, Sydney, NSW 2000, Australia. 1Department of Ophthalmology, Westmead Hospital, Sydney, Australia. 2Sydney Medical School, University of Sydney, Sydney, Australia. 3Macular Research Group, Room 116, Level 1, Save Sight Institute, Campus of Sydney Eye Hospital, 8 Macquarie St, Sydney, NSW 2000, Australia. Received: 7 March 2014 Accepted: 14 July 2015 Received: 7 March 2014 Accepted: 14 July 2015 Conclusions f Patient satisfaction is of fundamental importance as a measure of the quality of care because it gives information 8. Maurino V, Allan BD, Rubin GS, Bunce C, Xing W, Findi O, et al. Quality of Vision after Bilateral Multifocal Intraocular Lens Implantation: A Randomized Page 7 of 7 Au et al. BMC Ophthalmology (2015) 15:80 Trial - AT LISA 809M versus AcrySof ReSTOR SN6AD1. Ophthalmology. 2014. doi:10.1016/j.ophtha.2014.10.002. Epub ahead of print. Trial - AT LISA 809M versus AcrySof ReSTOR SN6AD1. Ophthalmology. 2014. doi:10.1016/j.ophtha.2014.10.002. Epub ahead of print. Trial - AT LISA 809M versus AcrySof ReSTOR SN6AD1. Ophthalmology. 2014. doi:10.1016/j.ophtha.2014.10.002. Epub ahead of print. 34. Canvin K, Jacoby A. Duty, desire or indifference? A qualitative study of patient decisions about recruitment to an epilepsy trial. Trials. 2006;7:32. 35. Klink T, Sauer J, Korber NJ, Grehn F, Much MM, Thederan L, et al. Quality of life following glaucoma surgery: canaloplasty versus trabeculectomy. Clin Ophthalmol. 2014;18(9):7–16. 9. Gothwal VK, Wright TA, Lamoureux EL, Khadka J, McAlinden C, Pesudovs K. Improvements in visual ability with first-eye, second-eye, and bilateral cataract surgery measured with the visual symptoms and quality of life questionnaire. J Cataract Refract Surg. 2011;37:1208–16. 36. Jackson JL, Chamberlin J, Kroenke K. Predictors of patient satisfaction. Social Science Med. 2001;51:609–20. 10. Brunette I, Gresset J, Boivin JF, Boisjoly H, Makni H. Functional outcome and satisfaction after photorefractive keratectomy. Part 1: Development and validation of a survey questionnaire. Ophthalmology. 2000;107:1783–9. 37. Greenfield S, Kaplan S, Ware J. Expanding patient involvement in care: effects on patient outcomes. Ann Intern Med. 1985;102(4):520–8. 38. Sitzia J, Wood N. Patient satisfaction: a review of issues and concepts. Soc Sci Med. 1997;45:1829–43. 11. Schein OD. The measurement of patient-reported outcomes of refractive surgery: the refractive status and vision profile. Trans Am Ophthalmol Soc. 2000;98:439–69. 39. McLafferty RB, Williams RG, Lambert AD, Dunnington GL. Surgeon communication behaviors that lead patients to not recommend the surgeon to family members or friends: analysis and impact. Surgery. 2006;140:616–24. 12. Ryu WY, Sohn EJ, Ahn HB. Differences between patient expectations and actual strabismus surgery experience in adults. Can J Ophthalmol. 2015;50(1):61–7. 40. Akkad A, Jackson C, Kenyon S, Dixon-Woods M, Taub N, Habiba M. Informed consent for elective and emergency surgery: questionnaire study. BJOG. 2004;111:1133–8. 13. Conner-Spady BL, Sanmugasunderam S, Courtright P, McGurran JJ, Noseworthy TW. Determinants of patient satisfaction with cataract surgery and length of time on the waiting list. Br J Ophthalmol. Conclusions f 2004;88:1305–9. 41. Kang KD, Majid A, Kwag JH, Kim YD, Yim HB. A prospective audit on the validity of written informed consent prior to glaucoma surgery: an Asian perspective. Graefes Arch Clin Exp Ophthalmol. 2010;248:687–701. 14. Nijkamp MD, Nuijts RM, Borne B, Webers CA, van der Horst F, Hendrikse F. Determinants of patient satisfaction after cataract surgery in 3 settings J Cataract Refract Surg. 2000;26:1379–88. 42. Elwyn G, Edwards A, Gwyn R, Grol R. Towards a feasible model for shared decision making: focus group study with general practice registrars. BMJ. 1999;319:753–6. 15. Song J, Oh J, Baek SH. A survey of satisfaction in an ophthalmic patients wearing ocular prosthesis. Graefe’s Arch Clin Exp Ophthalmol. 2006;244:330–5. 43. Mozaffarieh M, Heinzl H, Sacu S, Wedrich A. In-patient management and treatment satisfaction after intravitreous plasminogen activator injection. Graefe’s Arch Clin Exp Ophthalmol. 2006;244:1421–8. 16. Thompson B, Collins MJ, Hearn G. Clinician interpersonal communication skills and contact lens wearers’ motivation, satisfaction, and compliance. Optom Vis Sci. 1990;64:673–8. 44. Stuart PA. Consumer’s Perspective Project. Adelaide: Lyell McEwin Hospital; 1999. 17. Uiters E, van den Borne B, van der Horst FG, Volker- Dieben HJM. Patient satisfaction after corneal transplantation. Cornea. 2001;20:687–94. 45. Ware JE, Hays RD. Methods for measuring patient satisfaction with specific medical encounters. Med Care. 1988;26:393–402. 18. Ziaei H, Katibeh M, Eskandari A, Mirzadeh M, Rabbanikhah Z, Javadi MA. Determinants of patient satisfaction with ophthalmic services. BMC Res Notes. 2011;4:7. 46. Draper M. Consumers and General Practice: Understanding and Assessing Consumer Experiences by Using Patient Satisfaction Surveys. Canberra: Consumers’ Health Forum of Australia; 1996. 19. Dawn AG, Santiago-Turla C, Lee PP. Patient expectations in eye care: focus group results. Arch Ophthalmol. 2003;121:762–8. 47. Aharony L, Strasser S. Patient satisfaction: what we know about and what we still need to explore. Med Care Rev. 1993;50:49–79. 20. Dawn AG, Lee PP. Patient expectations for medical and surgical care: a review of the literature and applications to ophthalmology. Surv Ophthalmol. 2004;49:513–24. we still need to explore. Med Care Rev. 1993;50:49–79. 48. McAlinden C, Pesudouvs K, Moore JE. The development of an instrument to measure quality of vision: the Quality of Vision (QoV) Questionnaire. Invest Ophthalmol Vis Sci. 2010;51(11):5537–45. 21. Sherbourne CD, Hays RD, Ordway L, DiMatteo MR, Kravitz RL. Antecedents of adherence to medical recommendations: results from the medical outcomes study. J Behav Med. 1992;15:447–68. 49. Pesudovs K, Burr JM, Harley C, Elliott DB. Conclusions f The development, assessment, and selection of questionnaires. Optom Vis Sci. 2007;84:663–74. 22. O’Brien MK, Petrie K, Raeburn J. Adherence to medication regimens: updating a complex medical issue. Med Care Res Rev. 1992;49:435–54. 23. Otani K, Kurz RS, Harris LE. Managing primary care using patient satisfaction measures. J Health Manag. 2005;50:311–24. 24. Hart CWL, Heskett JL, Sasser WE. The profitable art of service recovery. Harvard Bus Rev. 1990;68:148–56. 25. Khadka J, Gothwal VK, McAlinden C, Lamoureux EL, Pesudouvs K. The importance of rating scales in measuring patient-reported outcomes. Health Qual Life Outcomes. 2012;10:80. doi:10.1186/1477-7525-10-80. 25. Khadka J, Gothwal VK, McAlinden C, Lamoureux EL, Pesudouvs K. The importance of rating scales in measuring patient-reported outcomes. Health Qual Life Outcomes. 2012;10:80. doi:10.1186/1477-7525-10-80. 26. Hobart JC, Cano SJ, Zajicek JP, Thompson AJ. Rating scales as outcome measures for clinical trials in neurology: problems, solutions, and recommendations. Lancet Neurol. 2007;6:1094–105. 26. Hobart JC, Cano SJ, Zajicek JP, Thompson AJ. Rating scales as outcome measures for clinical trials in neurology: problems, solutions, and recommendations. Lancet Neurol. 2007;6:1094–105. 27. Garratt AM, Helgeland J, Gulbrandsen P. Five-point scales outperform 10-point scales in a randomized comparison of item scaling for the Patient Experiences Questionnaire. J Clin Epidemiol. 2011;64:200–7. 27. Garratt AM, Helgeland J, Gulbrandsen P. Five-point scales outperform 10-point scales in a randomized comparison of item scaling for the Patient Experiences Questionnaire. J Clin Epidemiol. 2011;64:200–7. 28. Massof RW. Likert and Guttman scaling of visual function rating scale questionnaires. Ophthalmic Epidemiol. 2004;11:381–99. 28. Massof RW. Likert and Guttman scaling of visual function rating scale questionnaires. Ophthalmic Epidemiol. 2004;11:381–99. Conclusions f Submit your next manuscript to BioMed Central and take full advantage of: • Convenient online submission • Thorough peer review • No space constraints or color figure charges • Immediate publication on acceptance • Inclusion in PubMed, CAS, Scopus and Google Scholar • Research which is freely available for redistribution Submit your manuscript at www.biomedcentral.com/submit Submit your next manuscript to BioMed Central and take full advantage of: • Convenient online submission • Thorough peer review • No space constraints or color figure charges • Immediate publication on acceptance • Inclusion in PubMed, CAS, Scopus and Google Scholar • Research which is freely available for redistribution Submit your manuscript at www.biomedcentral.com/submit Submit your next manuscript to BioMed Central and take full advantage of: • Convenient online submission • Thorough peer review • No space constraints or color figure charges • Immediate publication on acceptance • Inclusion in PubMed, CAS, Scopus and Google Scholar • Research which is freely available for redistribution Submit your manuscript at www.biomedcentral.com/submit Submit your next manuscript to BioMed Central and take full advantage of: Submit your next manuscript to BioMed Central and take full advantage of: 29. Likert R. A technique for the measurement of attitudes. Archives of Psychology. 1932;140:1–55. 30. O’Cathain A, Thomas KJ, Drabble SJ, Rudolph A, Hewison J. What can qualitative research do for randomised controlled trials? A systematic mapping review. BMJ Open. 2013;3:1–15. • Convenient online submission • Thorough peer review 31. Varma R, Richman EA, Ferris FL, Bressler NM. Use of patient-reported outcomes in medical product development: a report from the 2009 NEI/FDA clinical trial endpoints symposium. Investig Ophthalmol Vis Sci. 2010;51:6095–103. 32. Lawton J, Fox A, Fox C, Kinmonth A. Participating in the United Kingdom Prospective Diabetes Study (UKPDS): a qualitative study of patients’ experiences. Br J Gen Pract. 2003;53:394–8. experiences. Br J Gen Pract. 2003;53:394–8. 33. Locock L, Smith L. Personal benefit, or benefiting others? Deciding whether to take part in clinical trials. Clin Trials. 2010;8:85–93. 33. Locock L, Smith L. Personal benefit, or benefiting others? Deciding whether to take part in clinical trials. Clin Trials. 2010;8:85–93.
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Review of: "[Review] Redefining the Concept of e-Government Program. A Review of the Literature"
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Qeios, CC-BY 4.0 · Review, July 25, 2023 Review of: "[Review] Redefining the Concept of eGovernment Program. A Review of the Literature" Rocio Andrea Rodriguez1 1 Universidad Abierta Interamericana Potential competing interests: No potential competing interests to declare. The article proposes to analyze the dimensions that eGovernment should include, proposing to incorporate aspects that have already been incorporated by various authors (such as transparency, citizen participation...). He arrives at a definition that does not raise anything new. It would make more sense to approach the subject as a state of the art where already existing frameworks and their dimensions are compared. On the other hand, in literature reviews, articles from the last 5 years are usually considered. In the work references there are no articles from 2020 to 2023. However, previous years there are articles that show that the dimensions that the author wants to incorporate were already considered. In case the author is interested in an article from 2009 where aspects raised in this article were already taken into account: Rodríguez, R. A., Estévez, E. C., Giulianelli, D. A., & Vera, P. M. (2009). Assessing e-governance maturity through municipal websites–measurement framework and survey results. In XV Congreso Argentino de Ciencias de la Computación. http://sedici.unlp.edu.ar/handle/10915/21013 Qeios ID: 0QP592 · https://doi.org/10.32388/0QP592 1/1
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Desempenho e termorregulação de porcas lactantes alojadas em diferentes localizações no interior de um galpão com sistema de resfriamento evaporativo em ambiente tropical
Arquivo Brasileiro de Medicina Veterinária e Zootecnia/Arquivo brasileiro de medicina veterinária e zootecnia
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http://dx.doi.org/10.1590/1678-4162-11370 Arq. Bras. Med. Vet. Zootec., v.71, n.5, p.1750-1758, 2019 J. Rigo https://orcid.org/0000-0003-0386-8967, M.R.B.M. Nascimento* https://orcid.org/0000-0003-4324-5262, N.A.M. Silva https://orcid.org/0000-0003-2318-1791 Comunicação [Communication] Desempenho e termorregulação de porcas lactantes alojadas em diferentes localizações no interior de um galpão com sistema de resfriamento evaporativo em ambiente tropical [Performance and thermoregulation of lactating sows housed in different locations inside a shed with an evaporative cooling system in a tropical environment] E.J. Rigo, M.R.B. Mattos Nascimento*, N.A.M. Silva Universidade Federal de Uberlândia ˗ Uberlândia, MG Conhecer a zona termoneutra dos suínos é importante. Os animais criados sob temperatura ambiente ideal têm menor gasto energético para manter o equilíbrio térmico e, consequentemente, sua produção, reprodução e bem-estar não são prejudicados. Williams et al. (2013) consideraram termoneutralidade temperaturas de 18 a 20°C e, como estresse por calor, de 24 a 30°C, para fêmeas suínas durante a gestação, lactação e pós-desmame. A umidade do ar ideal é de 50 a 70%, não devendo ultrapassar 70% (Sampaio et al., 2004), e o valor do índice de temperatura e umidade (ITU) até 74 é considerado sem estresse por calor (Wegner et al., 2016). resfriamento evaporativo com pressão negativa foi mais eficiente que os de resfriamento na nuca e manejo de cortina na redução da temperatura do ar (Morales et al., 2013). No verão, Justino et al. (2015) verificaram que o resfriamento direcionado à região da cabeça da porca em lactação auxiliou na sua termorregulação e aumentou a massa corporal dos leitões ao desmame em relação ao grupo de fêmeas mantidas na mesma sala de maternidade, porém sem receber o resfriamento da cabeça. Perin et al. (2016) concluíram que fêmeas suínas lactantes que receberam resfriamento da nuca apresentaram desempenho superior às matrizes alojadas em galpão com manejo de cortinas. Efeitos negativos das altas temperaturas sobre as matrizes suínas lactantes levaram ao desenvolvimento de alguns sistemas de resfriamento, por exemplo: o uso do sistema de ventilação por pressão positiva, resfriamento da cabeça da porca e resfriamento evaporativo combinado com ventilação por pressão negativa. Esses sistemas têm a finalidade de melhorar a condição térmica, reduzir os efeitos das altas temperaturas e melhorar o bem-estar dos animais, para, assim, diminuir perdas na produtividade. Entretanto, não foram encontradas, na literatura consultada, pesquisas que tivessem avaliado a uniformidade do ambiente térmico ao longo do galpão com sistema de resfriamento evaporativo combinado com pressão negativa para matrizes suínas lactantes. Portanto, objetivou-se neste estudo avaliar o ambiente térmico em diferentes localizações no interior de um galpão, próximo ao pad cooling (leste), centro e próximo aos exaustores (oeste) de um galpão de maternidade e as variáveis fisiológicas de termorregulação, desempenho reprodutivo e produtivo de matrizes suínas e da leitegada, no verão.  Estudos têm investigado os diferentes sistemas de controle do ambiente térmico em galpões de fêmeas suínas em lactação. O sistema de Recebido em 18 de março de 2019 Aceito em 19 de março de 2019 *Autor para correspondência (corresponding author) E-mail: maran@ufu.br O estudo foi aprovado, com o registro CEEA068/2016, pelo Comitê de Ética e Experimentação Animal da Universiade de Uberaba-Uniube. Esta pesquisa foi realizada em Desempenho e termorregulação... uma granja comercial produtora de suínos desmamados (UPD), localizada em Bom Jesus dos Campos, MG, (latitude 20º 46´ 01.4"S, longitude 46º 12' 26.4"W, e altitude 830m), Brasil, em janeiro de 2017. Trinta e quatro matrizes suínas de composição genética 50% Landrace/50% Large White, todas da linhagem comercial Topigs 20®, foram alojadas em um galpão de maternidade com, respectivamente, 111,00; 10,20 e 2,95m de comprimento, largura e pé direito, coberto com telha de barro com beiral de 1,10m, mureta de 0,80m de altura, com as laterais de telas metálicas e cortinas e forro de face prata. Este era constituído de resfriamento evaporativo combinado com pressão negativa, com quatro exaustores de 1,30 metro de diâmetro no lado oeste, e dois painéis evaporativos com 7,17m x 1,90m, instalados no lado leste, nas laterais norte e sul. O sistema de refrigeração evaporativo era ligado e desligado automaticamente quando a temperatura do ar atingia, respectivamente, 26 e 24ºC. O sistema era ajustado para manutenção da umidade entre 60 e 80%. A edificação era composta por três linhas de celas parideiras, com piso plástico totalmente ripado, com uma área central para as fêmeas (0,70m x 2,20m), e, nas laterais, com duas áreas exclusivas para os leitões (0,43m x 2,20m). Cada gaiola possuía um escamoteador (1,00m x 0,45m) com piso aquecido. As matrizes suínas híbridas foram escolhidas aleatoriamente nas três linhas de gaiolas, nas seguintes localizações: próximo aos painéis evaporativos: 12 fêmeas com ordem de parto (OP) de um a sete; no meio do galpão: 11 com OP de três a oito; e próximo aos exaustores: 11 com OP de um a seis. Elas receberam ração de lactação à base de milho e farelo de soja, com 19,6% de proteína bruta e 3.469,73kcal de EM por kg. No dia do parto, a ração não foi oferecida; do segundo ao sétimo dia de lactação, a quantidade foi crescente, quando se estabilizou, e, a partir deste momento, a matriz recebeu, em média, 0,649kg/leitão. A dieta foi fracionada e fornecida automaticamente às sete, 10, 12 e 15 horas. Diariamente, o consumo de ração foi calculado pela diferença entre a quantidade de alimento fornecido e a sobra, e calculou-se o Arq. Bras. Med. Vet. Zootec., v.71, n.5, p.1750-1758, 2019 consumo médio diário. As matrizes e os leitões receberam água à vontade, em bebedouro tipo nipple. As variáveis fisiológicas medidas na matriz suína foram realizadas de manhã e à tarde, em seis dias não consecutivos, iniciando um dia antes do parto previsto até o dia do desmame, realizadas pelo mesmo observador, após uma hora do arraçoamento das matrizes, totalizando 12 medidas por animal, por variável. A frequência respiratória foi medida pela contagem dos movimentos do flanco, com as matrizes em repouso, sem estarem amamentando e em decúbito. A temperatura superficial foi obtida atrás da orelha, no meio da escápula, na região mediana do dorso e no meio do pernil, com termômetro infravermelho (Instrutemp, modelo DT 8530), com variação de -20°C a 530°C, e calculou-se a média. Após 40 a 60 minutos da ingestão de ração, mediu-se a temperatura retal com termômetro clínico digital (Tech Line, modelo TS-101), faixa de 32°C a 42,9°C a cinco centímetros de profundidade, por dois minutos. Um dia antes do parto e no dia do desmame, mediu-se espessura de toucinho na posição P2 (na altura da última costela), aproximadamente a 6,5cm da coluna vertebral com ultrassom (Microem, modelo MTU-100), com 2MHz pulsado. Registrou-se também o intervalo desmame-estro. Depois da uniformização, que ocorreu 24 horas após o nascimento, fez-se a pesagem da leitegada em balança digital (Saint; 0,010kg a 50kg), bem como no desmame (Açores; 2kg a 300kg), para se obter o ganho médio diário de massa corporal. A temperatura do ar, a umidade relativa e a temperatura de ponto de orvalho foram medidas a cada 30 minutos, por data loggers (Instrutherm, modelo HT-500), fora e dentro do galpão, nos seis dias das coletas das variáveis fisiológicas, durante o dia. Para isso, instalaramse nove data loggers, a 0,60m de altura, divididos igualmente, próximo aos pads, ao centro e perto dos exaustores, e um data logger, fora do galpão, no abrigo termométrico. A velocidade do vento foi medida com anemômetro (Instruterm AD-250), colocado próximo das matrizes (Fig. 1). Calculou-se o índice de temperatura e umidade (ITU) conforme Thom (1959). 1751 Rigo et al. Figura 1. Representação esquemática mostrando os locais onde foram colocados os data loggers ( ) nas diferentes localizações: próximo aos painéis evaporativos (setor leste, S1); no meio do galpão (meio, S2) e próximo aos exaustores (setor oeste, S3). Os dados de desempenho produtivo foram avaliados pela ANCOVA, sendo ordem de parto e número de desmamados considerados covariáveis, após verificação do pressuposto de normalidade (teste de Lilliefors) e pressupostos de homogeneidade de variâncias (teste de Bartlett), e as médias foram comparadas pelo teste F. Para as variáveis que não alcançaram os pressupostos, mesmo após serem transformadas, utilizou-se o teste de Kruskal-Wallis, exceto dados fisiológicos de termorregulação de manhã e à tarde, em que se usou o teste de Wilcoxon. Realizou-se a correlação entre as variáveis fisiológicas de termorregulação com as variáveis temperatura e umidade do ar. Em todos os casos, α=0,05. meio do galpão e próximo aos exaustores (Tab. 1). O valor da Ta encontrados próximo aos pads cooling ficou dentro da zona termoneutra, entretanto, no centro e próximo aos exaustores, os valores da temperatura do ar estiveram no seu limite, conforme Auvigne et al. (2010), que citaram, para matrizes suínas, valor de até 25,0ºC. No entanto, em todas as localizações do galpão, a temperatura esteve acima da zona de termoneutralidade, conforme Williams et al. (2013), que consideraram valores ideais de 18 a 20ºC. O valor de ITU foi tido como normal (seguro), de acordo com Botto et al. (2014), porém, segundo Wegner et al. (2016) no meio do galpão e próximo aos exaustores seria classificado como crítico (>74-79) uma vez que estes autores classificaram sem estresse ITU ≤74. Os valores médios da temperatura do ar e do ITU foram menores no setor leste em comparação ao Tabela 1. Média, desvio-padrão, mínimo (Mín) e máximo (Máx) das variáveis do ambiente térmico em três localizações, em um galpão de maternidade para suínos, com resfriamento evaporativo combinado com pressão negativa, no verão, em ambiente tropical Próximo aos pads N2 Meio - S2 Próximo aos exaustores- S3 P coolling- S1 valor Média Média Média Mín Máx Mín Máx Mín Máx (desvio) (desvio) (desvio) Ta (°C)1 450 22,38 (1,16)a 20,6 24,2 24,56 (1,62)b 22,6 26,9 25,00 (1,45)b 23,1 27,4 <0,01 1 UR (%) 450 94,64 (2,21)b 88,7 96,8 86,70 (2,90)a 79,7 90,3 87,29 (3,66)a 79,6 92,0 <0,01 ITU1 450 71,84 (1,89)a 69,3 74,0 74,82 (2,47)b 71,5 77,1 75,62 (2,12)b 72,3 77,7 <0,01 1 Médias seguidas pela mesma letra, na linha, diferem entre si pelo teste de Kruskal-Wallis. Ta – temperatura do ar; UR – umidade relativa; ITU – índice de temperatura e umidade. 2N – número de observações. Independentemente da localização dentro do galpão de maternidade, o comportamento da temperatura do ar e do ITU aumentou do período da manhã para o da tarde (Fig. 2A e 2C). A 1752 temperatura externa teve comportamento semelhante, porém com maior amplitude térmica (Fig. 2D). Arq. Bras. Med. Vet. Zootec., v.71, n.5, p.1750-1758, 2019 Desempenho e termorregulação... O comportamento da umidade relativa foi inverso ao da temperatura e do ITU (Fig. 2B). Esse resultado era esperado, uma vez que a sua variação ocorre por causa das alterações na temperatura. A umidade nas três localizações esteve acima da condição ideal para suínos, que não deve ultrapassar 70% (Sampaio et al., 2004). Também Morales et al. (2013) verificaram maior valor médio de umidade em galpões com painéis evaporativos em comparação àqueles com resfriamento sobre a cabeça e com manejo de cortina (88,3; 74,5; 73,6%, respectivamente). A velocidade do vento na altura das matrizes foi nula. A) Temperatura (°C) (dentro do galpão) B) Umidade relativa (%) (dentro do galpão) C) ITU (dentro do galpão) D) Data logger (fora do galpão) Figura 2. Ambiente térmico a cada 30 minutos, dentro e fora do galpão de maternidade, para matrizes suínas no período diurno (S1= próximo aos pads cooling; S2= meio do galpão e S3= próximo aos exaustores). Matrizes alojadas próximo aos pads cooling apresentaram frequência respiratória e temperatura superficial menores que aquelas localizadas no centro e próximo aos exaustores (Tab. 2). Esses resultados eram esperados, uma vez que a Ta e o ITU próximo aos pads foram menores que nos demais locais do galpão. A temperatura superficial é influenciada pela Arq. Bras. Med. Vet. Zootec., v.71, n.5, p.1750-1758, 2019 temperatura do ar e pela vasodilatação periférica que ocorre em resposta à temperatura ambiente elevada, e, quando a diferença entre a temperatura superficial e a do ambiente for maior, então, maior será a dissipação de calor pelos mecanismos sensíveis de calor. Já a frequência respiratória é uma boa medida para verificar se os animais estão ou não sob estresse 1753 Rigo et al. por calor, e, no setor leste (pads), o ambiente térmico esteve dentro da zona termoneutra. Justino et al. (2014), ao estudarem o resfriamento da nuca de porcas em lactação, observaram redução da frequência respiratória e da temperatura superficial de animais sob resfriamento da região da cabeça em comparação àqueles que receberam somente ventilação natural na cabeça (46,68 vs. 62,55 mov.min-1 e 34,33 vs. 34,79ºC, respectivamente). Portanto, o sistema de resfriamento pode influenciar na frequência respiratória e na temperatura superficial. inferiores às encontradas por Martins et al. (2008), que foram de 74,8mov.min-1 a uma Ta média de 27,8°C e umidade de 75,3% em galpão de maternidade, com cortinas laterais (abertas às 7h30 e fechadas às 18h), e equipado com ventiladores (acionados, rotineiramente, das 11 às 16h). Os valores da frequência respiratória observada por Justino et al. (2014) em porcas em lactação, com resfriamento da região da cabeça (46,68mov.min-1), foram próximos aos obtidos no presente estudo, em matrizes alojadas próximo aos pads coolling, e abaixo dos obtidos nos animais do meio e próximo aos exaustores. O valor da FR neste estudo foi superior aos encontrados por Williams (2009) em porcas sob conforto térmico (18 a 20ºC) (33,74mov.min-1), primíparas, Landrace e Landrace x Large White, em câmara climática, porém inferior àquelas sob estresse por calor (24 a 30ºC) (62,90mov.min-1). Então, as divergêngias observadas para FR podem ser explicadas, em parte, pelo uso de diferentes sistemas de resfriamento. O valor de frequência respiratória das matrizes próximas aos pads foi inferior ao encontrado por Corassa et al. (2014) em matrizes no último estágio de lactação (48,06mov.min-1), criadas em galpão com ventilação natural manejado por abertura e fechamento de cortinas (Ta de 26,97°C e UR de 78,86%), e superior ao encontrado em animais alojados no meio e próximo aos exaustores. As médias de FR foram Tabela 2. Média, desvio-padrão, mínimo (Mín) e máximo (Máx) das variáveis fisiológicas de fêmeas suínas lactantes em diferentes localizações, em um galpão de maternidade com resfriamento evaporativo combinado com pressão negativa, no verão, em ambiente tropical Próximo aos pads Meio do galpão Próximo aos exaustores coolling P valor Média Média Média Mín Máx Mín Máx Mín Máx (desvio) (desvio) (desvio) FR (mov.m1 ) TS (°C) 43,67 (18,28)a 29,51 (2,55)a TR (°C) 38,40 (0,37)a 12 108 21,2 35,5 52,04 (19,30)b 32,02 (1,56)b 38,0 40,3 38,48 (0,55)a 16 96 27,9 35,5 56,38 (19,66)b 32,56 (1,65)b 37,5 40,9 38,93 (0,58)b 16 112 <0,01 27,8 36,2 <0,01 38,0 40,8 <0,01 Médias seguidas pela mesma letra, na linha, diferem entre si pelo teste de Kruskal-Wallis. FR – frequência respiratória; mov.m-1 – movimentos respiratórios por minuto; TS – temperatura superficial; TR – temperatura retal. A temperatura retal das matrizes alojadas próximo aos pads cooling e ao centro foi inferior às localizadas próximo aos exaustores (Tab. 2). Apesar de todos os valores dessa variável estarem dentro da normalidade para a espécie, seu maior valor em matrizes alojadas próximo aos exaustores pode ter sido uma ineficiência na sua termorregulação. Os valores observados neste estudo foram superiores ao verificado por Malmkvist et al. (2012) em matrizes suínas lactantes, de primeira a terceira ordem de parto, criadas sob temperatura ambiente de 20ºC (38,0ºC), entretanto foram inferiores ao de matrizes criadas a 25ºC (39,0ºC). Williams et al. (2009) encontraram valores de 39,22 e 39,44°C, respectivamente, para porcas sob conforto (18 a 1754 20ºC) e sob estresse por calor (24 a 30ºC), primíparas, Landrace e Landrace x Large White, valores esses superiores aos obtidos no presente estudo. Robinson (2004) cita valor de 39,1°C, e Martins et al. (2008) de 39,2°C a uma Ta média de 27,8°C e UR de 75,3%, valores superiores aos obtidos neste estudo. Justino et al. (2014), ao avaliarem as respostas fisiológicas em fêmeas suínas lactantes em sistema de resfriamento da cabeça, encontraram temperatura retal de 38,8°C, temperatura de superfície de 34,3°C e frequência respiratória de 46,7mov.min-1 (temperatura do ar de 24,2ºC e umidade de 79,5%), valores próximos aos encontrados no presente estudo, em que foi Arq. Bras. Med. Vet. Zootec., v.71, n.5, p.1750-1758, 2019 Desempenho e termorregulação... usado o SRE com pad cooling. Malmkvist et al. (2012) também observaram aumento das temperaturas retal e superficial e da frequência respiratória quando a temperatura ambiente da maternidade aumentou de 15,0 para 25,0ºC. Também Kiefer et al. (2010), que estudaram suínos castrados mantidos em ambiente quente (32ºC), verificaram maior temperatura retal em relação àqueles mantidos em ambiente de 21ºC e concluíram que essas variáveis fisiológicas aumentaram proporcionalmente com a elevação da temperatura ambiente. A localização da matriz suína dentro do galpão com sistema de resfriamento evaporativo pad cooling não influenciou na espessura de toucinho, no intervalo desmame-estro, no consumo de ração, na massa corporal inicial e final dos leitões, no número de desmamados e no ganho de massa corporal diário dos leitões (Tab. 3). Esses resultados podem ser explicados, primeiro, possivelmente porque o consumo diário de ração bem como os seus nutrientes foram suficientes para o bom desempenho, segundo, porque os efeitos do estresse por calor dependem da duração e de sua intensidade, portanto o ambiente térmico no centro e próximo aos exaustores, apesar de ter influenciado negativamente as variáveis de termorregulação, não foi suficiente para prejudicar o desempenho. Entretanto, ao se considerar o bem-estar animal (BEA), em que uma das cinco liberdades é o conforto, as fêmeas suínas no centro e próximo aos exaustores possivelmente tiveram BEA prejudicado. É importante mencionar também que as condições meteorológicas dentro do galpão com o SRE pad cooling foram mais adequadas que as encontradas no meio externo (Fig. 2D), portanto esse sistema amenizou a influência dos fatores climáticos. Justino et al. (2015) também verificaram que matrizes criadas em sistema de ventilação natural e em sistema de resfriamento da cabeça, criadas no mesmo galpão, apresentaram desempenhos produtivo e reprodutivo semelhantes. Entretanto, Farmer et al. (2007) verificaram maior consumo de ração sob 21ºC em comparação às porcas lactantes mantidas sob 29ºC (4,6 vs. 3,8kg.dia-1). Uma explicação para essa divergência de resultados pode ser a intensidade do estresse, que foi acima da temperatura média observada no presente estudo, e também a duração do estresse. Outra possível explicação é quanto à quantidade e aos nutrientes da ração, que provavelmente foram suficientes para o bom desempenho no presente estudo. O consumo médio diário de ração esteve acima do encontrado por Campos et al. (2008) para matriz lactante híbrida, que foi de 6,520kg, em Ta média de 23,5ºC. Tabela 3. Média, desvio-padrão, mínimo (Mín) e máximo (Máx) das variáveis de desempenho de fêmeas suínas lactantes em três locais (setor), em um galpão com resfriamento evaporativo combinado com pressão negativa, no verão, em ambiente tropical Próximo ao pad cooling Próximo aos exaustores – Meio do galpão –S2 (S1) S3 PMédia Média Média valor Mín Máx Mín Máx Mín Máx (desvio) (desvio) (desvio) ET parto2(mm) ET desm.2(mm) Dif. 2(mm) IDE (dias) CMD 2 (kg) MCI leit.2 (kg) 2 MCF leit. (kg) 4 N° desm. GMC leit.2 (kg/dia) 16,92 (4,14) 16,42 (2,87) -0,50 (2,47) 4,1 (0,5) 7,366 (0,291) 1,413 (0,246) 5,100 (0,890) 12,0 (0,85) 0,184 (0,403) 11,00 26,00 19,73 (4,65) 15,00 28,0 11,00 20,00 19,00 (5,44) 12,00 26,0 -6,0 4,0 2,0 5,0 -5,0 4,0 5,0 10,0 6,833 7,690 6,156 7,500 0,918 1,720 0,985 1,874 3,989 6,730 3,293 6,884 11,0 13,0 8,0 16,0 0,134 0,265 -0,73 (3,04) 5,0 (2,3) 6,902 (0,477) 1,501 (0,285) 5,590 (0,930) 10,9 (2,3) 0,209 (0,412) 0,121 0,279 19,18 (4,02) 17,45 (3,24) -1,73 (1,74) 5,0 (1,5) 7,388 (0,525) 1,431 (0,317) 5,470 (1,050) 12,7 (1,6) 0,189 (0,325) 12,0 24,0 ns3 11,0 21,0 ns -4,0 4,0 2,0 9,0 ns ns 6,386 8,159 ns 0,778 1,744 ns 3,574 6,753 ns 10,0 15,0 0,133 0,232 ns 2 Médias comparadas pelo teste F. ET – espessura de toucinho; desm- desmama; Dif. – diferença entre ET parto e ET desm.; IDE – intervalo desmame-estro; CMD – consumo médio diário; MCI leit. – massa corporal inicial da leitegada; MCF leit. – massa corporal final da leitegada; N° desm. – número de desmamamdos; GMC leit. – ganho de massa corporal médio diário da leitegada. 3ns= não significativo. 4Covariável. Arq. Bras. Med. Vet. Zootec., v.71, n.5, p.1750-1758, 2019 1755 Rigo et al. Leitões nas diferentes localizações apresentaram massa corporal ao desmame e ganho médio diário semelhantes (Tab. 3). Esse resultado pode ser explicado, em parte, pelo fato de o consumo de alimentos das matrizes não ter diferido entre si e também por se manter normal e em quantidade adequada para lactação. Morales et al. (2013) expuseram um grupo de matrizes lactantes em galpão com sistema de resfriamento evaporativo com pressão negativa (SRE) a 23,1ºC, um grupo com resfriamento na nuca (RN) a 26,8ºC e em galpão com manejo de cortinas (MC) a 26,8ºC. Os autores verificaram que o consumo de ração foi maior nos animais em SRE (5,1kg.dia-1) e RN (5,2kg.dia-1) em relação à MC (4,7kg.dia-1), apesar de a temperatura do ar ser igual entre RN e MC, e explicaram que o maior consumo em RN foi por causa do ar fresco sobre a cabeça, que auxiliou na termorregulação e no conforto das porcas. Observaram ainda que a massa corporal dos leitões ao desmame não diferiu entre grupos e foi de 6,152kg para SRE, 6,209kg para RN e 5,977kg para MC. No entanto, Perin et al. (2016) observaram maior consumo de ração em porcas lactantes sob sistema de resfriamento na nuca (25,8ºC) em relação às criadas sob sistema convencional (26,1ºC) (4,8 vs. 5,8kg) e explicaram que o melhor desempenho dos leitões das matrizes alojadas sob o sistema de resfriamento na nuca se deveu ao melhor conforto térmico promovido pelo ar frio sobre os animais, conclusão semelhante à de Morales et al. (2013). A utilização do sistema de resfriamento evaporativo tem ação direta na redução dos efeitos das altas temperaturas sobre as variáveis ligadas à termorregulação em porcas em lactação durante os períodos quentes do ano e proporciona melhores pesos dos leitões ao desmame (Justino et al., 2015; Perin et al., 2016). As médias de todas as variáveis fisiológicas, da Ta e do ITU foram menores no período da manhã em comparação ao período da tarde (Tab. 4). Possivelmente, o aumento das variáveis de termorregulação ocorreu em razão do acréscimo da Ta, que possui uma ação direta sobre a produção e a dissipação de calor. Adicionalmente, observou-se correlação positiva e significativa entre as variáveis fisiológicas e a Ta (Tab. 5), o que indica que o aumento de Ta leva ao acréscimo das variáveis fisiológicas de termorregulação. Tabela 4. Média e desvio-padrão de variáveis ambientais e fisiológicas de fêmeas suínas lactantes em três localizações, em um galpão com resfriamento evaporativo combinado com pressão negativa, de manhã e à tarde FR UR (%) ITU TS (°C) TR (°C) Ta (°C) (mov.min-1) Manhã 48,71a (20,71) 30,26a (3,88) 38,43a (3,82) 91,85b (3,41) 22,70a (1,09) 72,16a (1,33) Tarde 52,11b (20,19) 32,33b (4,83) 38,76b (5,42) 87,56a (4,84) 25,17b (1,53) 75,90b (1,79) P valor 0,0443 <0,01 <0,01 <0,01 <0,01 <0,01 Médias seguidas por letras minúsculas na mesma coluna diferem pelo teste de Wilcoxon, a 5%. FR – frequência respiratória; mov.min-1 – movimentos respiratórios por minuto; TS – temperatura superficial; TR – temperatura retal; UR – umidade relativa; Ta – temperatura do ar; ITU – índice de temperatura e umidade. Tabela 5. Coeficiente de correlação entre as variáveis fisiológicas de matrizes suínas e variáveis do ambiente térmico Ta (temperatura do ar) FR (frequência respiratória) 0,305* TS (temperatura superificial) 0,679* TR (temperatura retal) 0,437* *P<0,001, em que: < 0,5, baixa; 0,5 a 0,8, média; superficial e TR= temperatura retal. UR ITU (umidade relativa) (índice de temperatura e umidade) -0,242* 0,308* -0,569* 0,685* -0,345* 0,438* > 0,8, alta. FR= frequência respiratória; TS= temperatura Justino et al. (2014) encontraram frequência respiratória e temperatura superficial menores em fêmeas suínas lactantes sob sistema de resfriamento da cabeça (46,68mov.min-1 e 34,33ºC, respectivamente) em relação ao sistema de ventilação natural (62,55mov.min-1 e 34,79ºC), e a temperatura retal não diferiu entre os sistemas de resfriamento (38,81 vs. 38,97ºC). 1756 Arq. Bras. Med. Vet. Zootec., v.71, n.5, p.1750-1758, 2019 Desempenho e termorregulação... A temperatura ambiente no galpão de resfriamento da nuca (24,15ºC) foi menor que com ventilação natural (26,25ºC). A hora do dia influencia as variáveis fisiológicas, assim Corassa et al. (2014), em galpão de maternidade com ventilação natural, sob temperaturas de 24,94 a 30,81ºC, obtiveram frequência respiratória para porcas em lactação de 64,35; 49,00; 38,60 e 28,35mov.min-1, respectivamente, à tarde, de manhã, à noite e na madrugada. A temperatura retal foi maior nos horários de 15h (39,24ºC) e 21h (39,32ºC) em relação aos horários de nove horas (38,67ºC) e três horas (38,87ºC). Os mesmos autores esclareceram que, nos horários mais quentes do dia, essas variáveis se mantêm elevadas, na tentativa de o animal ajustar sua homeotermia. Gourdine et al. (2006), em Guadalupe, latitude 16°N e longitude 61°W, encontraram maior temperatura retal em fêmeas suínas lactantes na estação muito quente (novembro a abril) em relação à estação quente (maio a outubro) (38,9 vs. 38,6°C), com temperaturas ambientes médias de 26,0 e 24,1°C, respectivamente. Os valores de umidade foram superiores de manhã em relação à tarde (Tab. 4). Também Morales et al. (2013) observaram flutuações que alcançaram 90,5% e 85,5% para os períodos matutino e vespertino, respectivamente, em galpão com SRE com pressão negativa. As correlações entre as variáveis fisiológicas com a Ta e o ITU (Tab. 5) foram significativas, positivas e de baixa a média magnitude. Também Brown-Brandl et al. (2012) verificaram que, quando há um aumento da temperatura do ar acima de 22°C (no presente estudo, no centro e próximo aos exaustores), ocorre um aumento na frequência respiratória, a qual contribui para o aumento da perda de calor por evaporação, o que auxilia no controle da temperatura corporal profunda. As correlações entre umidade e parâmetros fisiológicos foram significativas, negativas e de baixa a média magnitude, indicando que um aumento da umidade pode levar a maiores valores das variáveis fisiológicas. Em ambiente tropical, no verão, as condições meteorológicas num galpão de maternidade para matrizes suínas, com sistema de resfriamento evaporativo pad cooling com pressão negativa, não são homogêneas. No verão, no período diurno, a localização próxima aos pads coolings caracteriza um ambiente termoneutro, no entanto o centro e o próximo aos exaustores caracterizam desconforto térmico. O ambiente térmico no meio e próximo aos exaustores influencia negativamente os parâmetros fisiológicos de termorregulação, porém não prejudica o desempenho das matrizes e da leitegada. Palavras-chave: suíno, Sus scrofa, termoneutra, temperatura retal, leitão zona ABSTRACT The effects of housing lactating sows at different locations in a shed with evaporative cooling system (ECS) on their thermoregulation and reproductive and productive performance of the sow and the litter in summer were determined. 34 females were used in the three lines of cages at these locations: near the pad cooling; in the middle of the shed and near the exhaust fans. The air temperature and the temperature and humidity index (THI) were lower near the pad cooling (22.38ºC, 71.84) than the middle (24.56ºC, 74.82) and near the exhaust fans (25.00°C, 75.62). Respiratory rate, rectal and surface temperatures were lower in sows near the pad cooling (43.67 breaths.min -1, 38.40°C; 29.51°C) than in the center (52.04 breaths.min-1; 38.48ºC; 32.02ºC) and near the exhaust fans (56.38 breaths.min-1, 38.93ºC; 32.52ºC). The backfat thickness, the weaning-estrus interval and daily average consumption of the sows, number of weaning piglets, corporal mass and daily average gain of the piglets were not influenced by the location of housing in the shed. Lactating sows housed in the middle and near the exhaust fans in the ECS presented increased thermoregulation physiological variables, however, this did not impair the performance. Keywords: swine, Sus scrofa, thermoneutral zone, rectal temperature, piglet Arq. Bras. Med. Vet. Zootec., v.71, n.5, p.1750-1758, 2019 1757 Rigo et al. REFERÊNCIAS AUVIGNE, V.; LENEVEU, P.; JEHANNIN, C. et al. Seasonal infertility in sows: a five year field study to analyze the relative roles of heat stress and photoperiod. Theriogenology, v.74, p.60-66, 2010. BOTTO, L.; LENDELOVA, J.; STRMENOVA, A. et al. The effect of evaporative cooling on climatic parameters in a stable for sows. Res. Agric. Eng., v.60, p.S85-S91, 2014. BROWN-BRANDL, T.M.; EIGENBERG, R.A.; PURSWELL, J.L. Determining heat tolerance in finishing pigs using thermal imaging. In: INTERNATIONAL LIVESTOCK ENVIRONMENT SYMPOSIUM, 9., 2012, Valencia. Proceedings... Valencia: ASABE, 2012. p.8. CAMPOS, J.A.; TINÔCO, I.F.F; BAÊTA, F.C. et al. Ambiente térmico e desempenho de suínos em dois modelos de maternidade e creche. Rev. Ceres, v.55, p.187-193, 2008. CORASSA, A.; DAL MAGRO, T.R.D.; KOMIYAMA, C.M. et al. Comportamento e parâmetros fisiológicos de porcas em lactação na transição Cerrado-Amazônia. Comum. Sci., v.5, p.286294, 2014. FARMER, C.; KNIGHT, C.; FLINT, D. Mammary gland involution and endocrine status in sows: Effects of weaning age and lactation heat stress. Can. J. Anim. Sci., v.87, p.35-43, 2007. GOURDINE, J.L.; BIDANEL, J.P.; NOBLET, J. et. al. Effect of breed and season performance of lactating sows in a tropical humid climate. J. Anim. Sci., 84, p.360-369, 2006. JUSTINO, E.; NÄÄS, I.A.; CARVALHO, T.M.R. et al. Efeito do resfriamento evaporativo e do balanço eletrolítico sobre a lactação de porcas em condições de verão tropical. Arq. Bras. Med. Vet. Zootec., v.67, p.455-464, 2015. JUSTINO, E.; NÄÄS, I.A.; CARVALHO, T.M.R. et al. The impact of evaporative cooling on the thermoregulation and sensible heat loss of sows during farrowing. Eng. Agríc., v.34, P.1050-1061, 2014. KIEFER, C.; MOURA, M.S.; SILVA, E.A. et al. Respostas de suínos em terminação mantidos em diferentes ambientes térmicos. Rev. Bras. Saúde Prod. An., v.11, p.496-504, 2010. 1758 MALMKVIST, J.; PEDERSEN, L.J.; KAMMERSGAARD, T.S. et al. Influence of thermal environment on sows around farrowing and during the lactation period. J. Anim. Sci., v.90, p.3186-3199, 2012. MARTINS, T.D.D.; COSTA, A.N.; SILVA, J.H.V. Respostas termorreguladoras de matrizes suínas híbridas em lactação, mantidas em ambiente quente. Ciênc. agrotec., v.32, p.961-968, 2008. MORALES, O.E.S.; GONÇALVES, M.A.D.; STORTI, A.A. et al. Effect of different systems for the control of environmental temperature on the performance of sows and their litters. Acta Sci. Vet., v.41, p.1-8, 2013. PERIN, J.; GAGGINI, T.S.; MANICA, S. et al. Evaporative snout cooling system on the performance of lactating sows and their litters in a subtropical region. Ciênc. Rural, v.46, p.342-347, 2016. ROBINSON, N.E. Homeostase – termorregulação. In: CUNNINGHAM, J.G. Tratado de fisiologia veterinária. 3.ed. Rio de Janeiro: Guanabara Koogan, 2004. p.550-560. SAMPAIO, C.A.P.; CRISTIANI, J.; DUBIELA, J.A. et al. Avaliação do ambiente térmico em instalações para crescimento e terminação de suínos utilizando os índices de conforto térmico nas condições tropicais. Ciênc. Rural, v.34, p.784-790, 2004. THOM, E.C. The discomfort index. Weatherwise, v.12, p.57-60, 1959. WEGNER, K.; LAMBERTZ, C.; DAS, G. et al. Effects of temperature and temperature-humidity index on the reproductive performance of sows during summer months under a temperate climate. Anim. Sci. J., v.87, 1334-1339, 2016. WILLIAMS, A.M.; SAFRANSKI, T.J.; SPIERS, D.E. et al. Effects of a controlled heat stress during late gestation, lactation, and after weaning on thermoregulation, metabolism, and reproduction of primiparous sows. J. Anim. Sci., v.91, p.2700-2714, 2013. WILLIAMS, A.M. Effects of heat stress on reproduction and productivity of primiparous sows and their piglets’ performance. 2009. 136f. Tese (Master of Science). Faculty of the Graduate School, University of Missouri-Columbia. Arq. Bras. Med. Vet. Zootec., v.71, n.5, p.1750-1758, 2019
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Comprehensive target geometric errors and margin assessment in stereotactic partial breast irradiation
Radiation oncology
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* Correspondence: Xuejun.Gu@utsouthwestern.edu †Equal contributors 1Department of Radiation Oncology, The University of Texas Southwestern Medical Center, Dallas, TX 75390, USA Full list of author information is available at the end of the article Comprehensive target geometric errors and margin assessment in stereotactic partial breast irradiation Xin Zhen1,2† , Bo Zhao1†, Zhuoyu Wang3, Robert Timmerman1, Ann Spangler1, Nathan Kim1, Asal Rahimi1 and Xuejun Gu1* Zhen et al. Radiation Oncology (2017) 12:151 DOI 10.1186/s13014-017-0889-6 Zhen et al. Radiation Oncology (2017) 12:151 DOI 10.1186/s13014-017-0889-6 © The Author(s). 2017 Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. * Correspondence: Xuejun.Gu@utsouthwestern.edu Treatment delivery, target localization, and tracking Treatment delivery, target localization, and tracking Daily target positioning before the delivery of each radi- ation fraction was achieved by aligning the position of the fiducials on two orthogonally acquired x-ray images to their reference positions on the DRRs derived from the planning CT. Treatment delivery was supported by the Cyberknife Synchrony® Respiratory Tracking System. A typical S-PBI takes about 40 min or more, including patient positioning (~5 mins), robot positioning (~20– 30 min) to deliver multiple non-coplanar beams, image acquisition and motion modeling (~5–10 min for an en- tire fraction treatment), and beam delivery (~7 mins beam-on time). The internal fiducial positions identified on the paired orthogonal x-ray images (Fig. 1a) were correlated with external optical marker positions to es- tablish a respiratory correlation model. Paired orthog- onal x-ray images were acquired before treatment delivery to build a correlation model and throughout the treatment delivery to continually verify the model every minute and update if needed. The Cyberknife robotic arm then dynamically moved the beam during delivery to account for the respiration motion based on this cor- relation model [16]. The captured paired x-ray image se- quences were recorded and used to assess target geometric errors. An institutional review board (IRB) approved phase-I S-PBI clinical trial using Cyberknife® (Accuray Incorpo- rated, Sunnyvale, CA, USA) [9] was initiated at our insti- tution in 2010. Enrolled patients were treated with fiducial markers, implanted near the target as target sur- rogates and monitored by orthogonal kV images every minute during beam delivery. The purpose of this study is to analyze breast target geometric errors, both rigid and non-rigid, using these recorded fiducial positions and estimate treatment margins. Furthermore, clinical factors correlated to target geometric errors were inves- tigated with univariate and multivariate analysis. Abstract Zhen et al. Radiation Oncology (2017) 12:151 Page 2 of 8 Abstract Background: Recently developed stereotactic partial breast irradiation (S-PBI) allows delivery of a high biologically potent dose to the target while sparing adjacent critical organs and normal tissue. With S-PBI tumoricidal doses, accurate and precise dose delivery is critical to achieve high treatment quality. This study is to investigate both rigid and non-rigid components of target geometric error and their corresponding margins in S-PBI and identify correlated clinical factors. Methods: Forty-three early-stage breast cancer patients with implanted gold fiducial markers were enrolled in the study. Fiducial positions recorded on the orthogonal kV images on a Cyberknife system during treatment were used to estimate intra-fraction errors and composite errors (including intra-fraction errors and residual errors after patient setup). Both rigid and non-rigid components of intra-fraction and composite errors were analyzed and used to estimate rigid and non-rigid margins, respectively. Univariate and multivariate linear regressions were conducted to evaluate correlations between clinical factors and errors. Results: For the study group, the intra-fraction rigid and non-rigid errors are 2.0 ± 0.6 mm and 0.3 ± 0.2 mm, respectively. The composite rigid and non-rigid errors are 2.3 ± 0.5 mm and 1.3 ± 0.8 mm, respectively. The rigid margins in the left-right, anterior-posterior, and superior-inferior directions are estimated as 2.1, 2.4, and 2.3 mm, respectively. The estimated non-rigid margin, assumed to be isotropic, is 1.7 mm. The outer breast quadrants are more susceptible to composite errors occurrence than the inner breast quadrants. The target to chest wall distance is the clinical factor correlated with target geometric errors. Conclusions: This is the first comprehensive analysis of breast target geometric rigid and non-rigid errors in S-PBI. Upon the estimation, the non-rigid margin is comparable to rigid margin, and therefore should be included in planning target volume as it cannot be accounted for by the Cyberknife system. Treatment margins selection also need to consider the impact of relevant clinical factor. Keywords: Stereotactic partial breast irradiation, Cyberknife, Fiducial, Margin © The Author(s). 2017 Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. Background fiducial marker was 3-mm in length and 1.2-mm in diameter. These strategically placed fiducial markers were meant to serve as surrogates for the tumor bed it- self to localize targets and track target motion. Accelerated partial breast irradiation (APBI) is an effect- ive alternative to standard whole breast irradiation (WBI) in selected early-stage breast cancer patients undergoing breast conservation therapy [1–6]. Recently developed stereotactic partial breast irradiation (S-PBI) allows 1–5 treatment fractions by delivering a high bio- logically potent dose to the target, while sparing adjacent critical organs and normal tissue [1, 7–9]. With S-PBI tumoricidal doses, accurate and precise dose delivery is critical to achieve high treatment quality. Treatment simulation and planning Computer tomography (CT) simulation was conducted on each enrolled patient to obtain three-dimensional (3D) anatomic images for treatment planning. During simulation, the patients were set in a supine position with both arms above the head and immobilized by a Vac Loc® bag secured in an immobilization frame. CT scans were started either at or above the mandible, and were extended several centimeters below the inframam- mary fold (including the entire lung) with a 1.5-mm axial slices spacing. The CT images were imported into the CyberKnife MultiPlan® treatment planning system for target delineation and treatment planning. The clin- ical target volume (CTV) was defined by uniformly expanding the lumpectomy cavity volume by 10 mm. The PTV was defined as the CTV plus a 5.0-mm margin by excluding the chest wall, the pectoralis muscles, and the region within 5.0-mm distance to the skin. Critical structures were also delineated, such as the heart, the lung, the ipsilateral and contralateral whole breast, and etc. Fiducials identified on the CT images were projected on digitally reconstructed radiographs (DRRs) for subse- quent use during treatment set up. The primary challenge in accurate and precise dose delivery is treatment volume definition [10–14], defining regions clinically at risk and accounting for setup errors and intra-fractional motion uncertainties. In this report, we are concerned with the later. In breast irradiation, the soft and deformable nature of breast tissue makes setup and tracking of the breast targets particularly chal- lenging. Inter-fractional setup errors, caused by daily setup variations, are difficult to control. Although the rigid component can be mostly corrected with couch maneuvers prior to beam on, the non-rigid component currently has no effective method to be compensated. Intra-fractional motion, including both respiratory mo- tion and patient movement, is unconscious and unlikely to be eliminated. Intra-fractional errors must be moni- tored ideally in real-time or close to real-time to justify small planning target volume (PTV) margins. Rigid com- ponents of the intra-fractional error can be corrected using robotic delivery system (Cyberknife); however, the non-rigid components cannot be corrected. Data structure Depending on the duration of fractional treatment delivery, 7–73 pairs (with average 29) of x-ray images (512 × 512 with a resolution of 0.4mm × 0.4mm), called image pairs at node 0, 1…) were acquired. Node 0 refers to the images ac- quired right after fiducials (the target) was aligned and be- fore the first beam delivery. There were 6105 nodes and 215 fractions for 43 patients (5 fractions for each patient). Statistical analysis was performed at different data levels, in- cluding node, fraction, and patient levels. The node level was analyzed from the data extracted from the images at each node; the fraction level was conducted on the data av- eraged over the nodes in each fraction, and the patient level was performed on the data averaged over the nodes of each patient. The patient level data was used to estimate margin and study its correlation to clinical factors. Analysis Data struc positions. Intra-fraction error is defined as the target geometric deviation between the target position at node 0 of each treatment fraction, and subsequent treatment target position (Fig. 1c). Composite error is defined as the target geometric deviation between the planning CT and each treatment node 0, node 1, …, node n. In the time domain, the composite error includes both intra- fraction error after treatment start and inter-fraction re- sidual setup errors after initial kV-kV alignment. In the spatial domain, breast target geometric errors (called total errors) consist of rigid and non-rigid errors. Non- rigid error is noted when fiducials failed to align in pos- ition relative to one another that would reconstitute their relationship to the tumor cavity at simulation. Rigid and non-rigid errors (Fig. 1b) are analyzed separ- ately. Rigid errors were calculated using 3–5 fiducials’ 3D coordinates through a Horn’s quaternion-based 3D point matching algorithm [17], where the 3D fiducial po- sitions were calculated with paired two-dimensional (2D) fiducial coordinates identified on real-time paired x-ray images (Fig. 1a). Specifically, the rigid component Patients and fiducial marker placement Forty-three patients were randomly selected from the cohort enrolled at our institutional clinical trial, which is a single-arm, prospective 5-fraction dose escalation stereotactic radiotherapy study conducted on Cyberknife system. For each enrolled patient, four to five gold fidu- cial markers (CIVCO Medical Solutions, Orange City, IA) were systematically implanted at least 2-cm apart at the edge of the lumpectomy cavity [15]. Each gold Zhen et al. Radiation Oncology (2017) 12:151 Page 3 of 8 Fig. 1 a Paired orthogonal kV X-ray images acquired during S-PBI treatment. The red squares indicate the identified fiducials. b Illustration of rigid and non-rigid errors. Rigid error is calculated with rigid registration. Non-rigid error accounts for absolute fiducial residual distance after rigid registration. Non-rigid error of a patient is estimated by averaging residual distances over the implanted fiducials. c Illustration of intra-fraction error and composite error Fig. 1 a Paired orthogonal kV X-ray images acquired during S-PBI treatment. The red squares indicate the identified fiducials. b Illustration of rigid and non-rigid errors. Rigid error is calculated with rigid registration. Non-rigid error accounts for absolute fiducial residual distance after rigid egistration. Non-rigid error of a patient is estimated by averaging residual distances over the implanted fiducials. c Illustration of intra-fraction error and composite error Fig. 1 a Paired orthogonal kV X-ray images acquired during S-PBI treatment. The red squares indicate the identified fiducials. b Illustration of rigid and non-rigid errors. Rigid error is calculated with rigid registration. Non-rigid error accounts for absolute fiducial residual distance after rigid registration. Non-rigid error of a patient is estimated by averaging residual distances over the implanted fiducials. c Illustration of intra-fraction error and composite error Impact on breast target geometric errors Breast target geometric errors may be affected by a number of clinical factors: ①target location; ②mean CT number of breast (CTB, in Hounsfield Units (HUs), indicator of breast density); ③breast volume (BV, in cm3); ④distance of the target centroid to the chest wall (Dchest, in mm); ⑤distance of the target centroid to the skin (Dskin, in mm) (④and ⑤are indicators of in- fluence from breathing motion); ⑥PTV-to-breast vol- ume ratio (PBR, relative tumor size); ⑦ipsilateral breast side (left or right), and ⑧patient age (PA). Margin estimation Target margins are derived from composite errors and should account for rigid and non-rigid components. Calculations of the rigid margin, the non-rigid margin and the total margin are detailed in Additional file 1: Appendix B. assessed by univariate linear regression. Multivariate lin- ear regression was also performed to predict the target geometric errors with the listed clinical factors (see Add- itional file 1: Appendix C for details). Statistical compu- tations and univariate linear regression were performed on the SPSS 19.0 software (SPSS Inc., Chicago, IL). Multivariate regression was accomplished using the stat- istical computing platform R (version 3.3.0) [19] with the ‘rjags’ library [20]. P=0.05 indicated statistical significance. Error analysis The quadrant division is centered at the nipple; b Cumulative frequency histogram of fiducial composite error in four breast quadrants (similar to cumulative dose volume histogram fashion). Here, we use point O as an example to explain the curve. The point O represents 8% of time lower inner fiducial has an error at least 5.0 mm or greater Error analysis In the longitudinal time domain, breast target geometric errors can be defined with different reference target Zhen et al. Radiation Oncology (2017) 12:151 Page 4 of 8 of target error was computed as T + R, where T is the translational error amplitude and R is the rotation contrib- uted error amplitude. The translational error amplitude is given by T ¼ ffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffi x2 þ y2 þ z2 p , where x, y, and z are the translation errors in the Left-Right (LR), Anterior- Posterior (AP), and Superior-Inferior (SI) direction. We used the following equation R ¼ ffiffiffi 2 p s ffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffi ∅2 þ θ2 þ φ2 q pro- posed in [18] to convert the contribution of angular rota- tion ∅(roll), θ(yaw), and φ(pitch) to the error amplitude, where s is the radius of the target. In this study, we chose the largest eligible tumor size s = 30 mm. Non-rigid errors are the fiducial point residual errors after rigid regis- tration. The amplitude of non-rigid error is estimated by averaging all the k individual fiducial residual mo- tions (Δxk, Δyk, Δzk) after rigid registration, calculated as N ¼ 1=k P k ffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffi Δxk þ Δyk þ Δzk p . The total error is therefore the combination of the above rigid and non- rigid errors, given by T + R + N. The 2D-3D fiducial coord- inate conversion is described in detail in Additional file 1: Appendices A. Note that considering the negligible fiducial migration (mean 0 mm) in breast reported in previous study [11], fiducial migration was ignored in this study. Fig. 2 a Breast quadrants. The quadrant division is centered at the nipple; b Cumulative frequency histogram of fiducial composite error in four breast quadrants (similar to cumulative dose volume histogram fashion). Here, we use point O as an example to explain the curve. The point O represents 8% of time lower inner fiducial has an error at least 5.0 mm or greater Fig. 2 a Breast quadrants. The quadrant division is centered at the nipple; b Cumulative frequency histogram of fiducial composite error in four breast quadrants (similar to cumulative dose volume histogram fashion). Here, we use point O as an example to explain the curve. The point O represents 8% of time lower inner fiducial has an error at least 5.0 mm or greater Fig. 2 a Breast quadrants. Intra-fractional and composite error The rigid and non-rigid components of intra-fraction and composite errors were evaluated on different data levels. The mean and SD of intra-fraction and composite breast errors are listed in Table 1. For the intra-fraction, rigid error was 2.0–2.2 mm, the non-rigid error was ~0.3 mm, and the total error was 2.3–2.5 mm. Also, 65% of the patients, 59% of the fractions, and 54% of the nodes presented total error greater than 2.0 mm. For the composite, rigid error was 2.3–2.6 mm, non-rigid error was ~1.3 mm, and total error was 3.6–3.9 mm. In 98% of the patients, 95% of the fractions, and 90% of the nodes, the total error was greater than 2.0 mm. For both To assess the relationship between target geometric errors and location, the breast was segmented into four quadrants: upper inner, upper outer, lower inner, and lower outer (Fig. 2a). Fiducial markers were categorized based on their location with the four quadrants. The composite total error was used to characterize the quad- rant target geometric error. Spearman’s rho was used for the correlation analysis between the listed clinical factors (2–8) and the target geometric errors. The factors found to be significantly correlated to the target geometric errors were further Zhen et al. Intra-fractional and composite error Radiation Oncology (2017) 12:151 Page 5 of 8 Table 1 Intra-fraction and composite breast target geometric errors* calculated at patient, fraction, and node levels Data level Rotation(0) Translation (mm) Rigid (mm) Non-rigid (mm) Total (mm) Roll Yaw Pitch LR AP SI Intra- fraction Patient 0.5 ± 0.3 (1.6) 0.0 ± 0.0 (0.2) 0.2 ± 0.2 (1.2) 0.8 ± 0.3 (1.9) 1.1 ± 0.4 (2.0) 1.0 ± 0.4 (2.3) 2.0 ± 0.6 (3.9) 0.3 ± 0.2 (0.8) 2.3 ± 0.7 (4.5) Fraction 0.5 ± 0.7 (4.2) 0.0 ± 0.1 (0.6) 0.2 ± 0.3 (3.1) 0.8 ± 0.6 (2.9) 1.1 ± 0.6 (3.6) 1.0 ± 0.6 (3.5) 2.1 ± 0.9 (6.0) 0.3 ± 0.3 (2.3) 2.3 ± 1.0 (6.6) Node 0.5 ± 0.7 (6.7) 0.1 ± 0.1 (1.1) 0.2 ± 0.4 (5.0) 0.8 ± 0.8 (6.9) 1.1 ± 1.0 (8.6) 1.0 ± 1.0 (7.0) 2.2 ± 1.4 (10.8) 0.3 ± 0.3 (3.8) 2.5 ± 1.5 (11.2) Composite Patient 0.5 ± 0.3 (1.4) 0.1 ± 0.1 (0.3) 0.3 ± 0.2 (1.0) 1.0 ± 0.3 (1.9) 1.3 ± 0.4 (2.2) 1.1 ± 0.4 (2.5) 2.3 ± 0.5 (3.6) 1.3 ± 0.8 (3.1) 3.6 ± 1.0 (5.8) Fraction 0.5 ± 0.6 (3.8) 0.1 ± 0.1 (0.4) 0.3 ± 0.3 (2.8) 1.0 ± 0.6 (3.1) 1.3 ± 0.6 (3.2) 1.1 ± 0.7 (6.2) 2.4 ± 0.9 (6.8) 1.3 ± 1.0 (5.6) 3.7 ± 1.3 (7.7) Node 0.5 ± 0.7 (6.9) 0.1 ± 0.1 (0.8) 0.3 ± 0.4 (4.5) 1.0 ± 0.8 (6.5) 1.3 ± 1.0 (6.4) 1.1 ± 1.0 (8.6) 2.6 ± 1.3 (11.5) 1.3 ± 1.0 (6.6) 3.9 ± 1.6 (13.1) *Numbers in the parentheses indicate the maximum values; rigid, non-rigid, and total errors are reported as amplitudes 0.00) and BV (ρ = 0.535 , p < < 0.00). No significant cor- relations were found for either rigid component or total error. the intra-fraction and the composite, AP direction was the largest in rigid errors, followed by SI and LR direc- tions. Rotation was small with mean values less than 0.50 in all three directions. Roll rotation was the largest followed by pitch, while yaw was negligible. Intra-fractional and composite error For the composite, a significant correlation was ob- served between non-rigid component and predictors Dchest (ρ = 0.572 , p < < 0.00) and BV (ρ = 0.566 , p < < 0.00), and between total error and Dchest (ρ = 0.504 , p = 0.001) and BV (ρ = 0.42 , p = 0.005). No significant cor- relation was found with clinical predictors and rigid component. Margin estimation The rigid margins in the LR, AP, and SI directions were estimated as 2.1, 2.4, and 2.3 mm, respectively, while the non-rigid margin was estimated as 1.7 mm. For Cyberknife-based S-PBI, with the rigid error corrected during beam delivery, the margins could be non-rigid only, 1.7 mm, in all directions. For treatment platform that do not offer frequent intra-fractional error detection and correction (e.g. conventional LINAC based S-PBI), in which both rigid and non-rigid margins need to be considered, the total margins in the LR, AP, and SI di- rections were 3.8, 4.1, and 4.0 mm, respectively. Univariate linear regressions of Dchest and BV with the composite errors, non-rigid component and total, are illustrated in Fig. 3. Although errors increased with increased Dchest and BV, the 95% prediction bands allowed a large range of motion prediction. The quality of the fits was moderate, as indicated by R2 equal to 0.37 and 0.29 for the composite non-rigid error, and 0.28 and 0.23 for the composite total error, for Dchest and BV, re- spectively. These results indicate that breast target geo- metric errors are complex and may be influenced by multiple factors. Impact of different clinical factors on errors The relationship between the composite error (or the composite total error) and the target location in different breast quadrants was plotted using a cumulative frequency illustration, representing smaller error by lower curves (Fig. 2b). The averaged error was 3.3 ± 2.2 mm (0.1 mm to 16.3 mm) in quadrant I, 3.7 ± 2.6 mm (0.1 mm to 20.2 mm) in quadrant II, 2.9 ± 1.4 mm (0.3 mm to 7.9 mm) in quadrant III, and 3.7 ± 2.4 mm (0.1 mm to 13.8 mm) in quadrant IV. These findings implied that the error in the inner breast quadrants was smaller than that in the outer breast quadrants (I vs II and III vs IV, p < 0.0001). Smaller error was also seen in lower quadrant III than in upper quadrant I, while lower quadrant IV and upper quadrant II errors were similar (p = 0.58). To further analyze correlation between the target geometric error and the listed clinical factors (2–8), multivariate linear regression was adopted. The multi- variate linear regression showed that only Dchest is statistically significant correlated to composite errors. For the non-rigid component, the estimated Dchest coefficient was 0.03 with a 95% CI of (0.01–0.05); for the total, the estimated coefficient was 0.03 with a 95% CI of (0.01–0.06). We observed that the SDs of the patient-specific random effect (σ1), the treatment- specific random effect (σ2), and the error term (σ3) were respectively estimated (95% CI) as 0.54 (0.42– 0.75), 0.44 (0.03–0.74), and 0.57 (0.04–0.78) for the non-rigid error, and as 0.70 (0.49–0.98), 0.50 (0.04– 1.05), and 0.84 (0.031.06) for the composite total error. For the intra-fraction, statistically significant correla- tions were found between the non-rigid component and predictors Dchest (Spearman coefficient ρ = 0.574 , p < < Zhen et al. Radiation Oncology (2017) 12:151 Page 6 of 8 Fig. 3 Univariate linear regressions of Dchest (a and c) and BV (b and d) with the composite errors, non-rigid component and total. The grey areas indicate the 95% confidence interval and the grey lines encompass the 95% prediction bands Fig. 3 Univariate linear regressions of Dchest (a and c) and BV (b and d) with the composite errors, non-rigid component and total. The grey areas indicate the 95% confidence interval and the grey lines encompass the 95% prediction bands 3.5mm × 3.5mm in [21]). Impact of different clinical factors on errors In contrast, the near real-time fi- ducial positions logged by the Cyberknife kV imaging sys- tem offer complete data set on breast target geometric changes during the course of treatment, allowing a com- prehensive study of breast target geometric errors. Discussion In this study, we analyzed breast target geometric errors at different data levels (node, fraction, and patient), at different time frames (intra and composite), and with different components (rigid, non-rigid, and total). Upon data analysis, margins were estimated and clinical factors impacting the errors were identified. p y g g In contrast to other studies [10, 11, 21, 23, 24] that mainly focused on rigid error, we analyzed the non-rigid component. We found that the non-rigid component of intra-fraction errors is small, with a mean of 0.3 mm on all data levels. These results are not surprising, since dia- phragmatic breathing motion is mostly detected in the abdomen, displacing abdominal organs like the liver more than chest wall structures like the breast. Our find- ings are consistent with those reported in a previous study [10]. The non-rigid component of composite er- rors has a mean of 1.3 mm, which is mainly caused by breast deformation during daily setup. We used non- rigid component of composite errors to further estimate non-rigid margins and found that they were similar to rigid margins (1.7 mm vs. ~2.3 mm). Breast target setup error and motion has been studied by other researchers [10, 11]. Yue et al. [10] investigated breast intra-fraction motion using fiducial positions ex- tracted from orthogonal kV images before and after treat- ment. Park et al. [11] evaluated intra−/inter-fraction respiratory motion and fiducial stability using pre- and post-treatment 4D CT images and daily online MV orthog- onal images. Because the kV/MV image pairs cannot be ac- quired simultaneously on a conventional LINAC, the 3D fiducial positions extracted from the images already imply a level of uncertainty. Moreover, pre- and post-treatment acquisitions cannot capture intra-fractional breast motion. Real-time magnetic resonance image (MRI) has also been reported to track breast motion [21, 22], though MRI can provide superior soft-tissue contrast of the tumor bed, the reported studies are merely focused on intra-fractional mo- tion using 2D MRI images with limited resolution (e.g. The geometric errors investigated in this study are ap- plicable to fiducial-based S-PBI both with and without real-time motion tracking/error correction. The com- posite total errors essentially represent the variation Zhen et al. Radiation Oncology (2017) 12:151 Page 7 of 8 Page 7 of 8 observed in conventional LINAC-based S-PBI (with image-guidance but without real-time motion tracking/ error correction). Competing interests f Competing interests This work is funded by a grant from Accuray. This work is funded by a grant from Accuray. References 1. Rault E, Lacornerie T, Dang HP, Crop F, Lartigau E, Reynaert N, Pasquier D. Accelerated partial breast irradiation using robotic radiotherapy: a dosimetric comparison with tomotherapy and three-dimensional conformal radiotherapy. Radiat Oncol. 2016;11:29. 2. Marta GN, Macedo CR, Carvalho HA, Hanna SA, JLF d S, Riera R. Accelerated partial irradiation for breast cancer: systematic review and meta-analysis of 8653 women in eight randomized trials. Radiother Oncol. 2015;114:42–9. 3. Vicini FA, Baglan KL, Kestin LL, Mitchell C, Chen PY, Frazier RC, Edmundson G, Goldstein NS, Benitez P, Huang RR, Martinez A. Accelerated treatment of breast cancer. J Clin Oncol. 2001;19:1993–2001. 4. Keisch M, Vicini F, Kuske RR, Hebert M, White J, Quiet C, Arthur D, Scroggins T, Streeter O. Initial clinical experience with the MammoSite breast brachytherapy applicator in women with early-stage breast cancer treated with breast-conserving therapy. Int J Radiat Oncol Biol Phys. 2003;55:289–93. 5. Olivotto IA, Whelan TJ, Parpia S, Kim DH, Berrang T, Truong PT, Kong I, Cochrane B, Nichol A, Roy I, et al. Interim cosmetic and toxicity results from RAPID: a randomized trial of accelerated partial breast irradiation using three-dimensional conformal external beam radiation therapy. J Clin Oncol. 2013;31:4038–45. Author details 1 1Department of Radiation Oncology, The University of Texas Southwestern Medical Center, Dallas, TX 75390, USA. 2Department of Biomedical Engineering, Southern Medical University, Guangzhou, Guangdong 510515, China. 3Department of Epidemiology, Biostatistics and Occupational Health, McGill University, 805 Sherbrooke Street West, Montreal, Quebec H3A 0G4, Canada. Publisher’s Note Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations. Discussion In contrast, the non-rigid component of composite error represents the residual error after rigid error compensation in S-PBI. Authors’ contributions The manuscript was written through contributions of all authors. XZ and BZ contributed equally to this study. XZ, BZ and XG designed the study. XZ and BZ collected all the data and performed the experiments and analysis. ZW implemented the multivariate linear regression model. RT, AS, NK and AR discussed the results and revised the manuscript. All authors have given approval to the final version of the manuscript. Based on the analysis in different breast quadrants, targets situated in inner quadrants have smaller errors than those in outer quadrants. Targets in lower quadrant were more stable than those in upper quadrants. BV and Dchest were found to be statistically correlated with breast target geometric errors. A larger breast is likely to present larger error because soft tissue breast is highly deformable and susceptible to movement [10]. Notice that BV and Dchest are intrinsically correlated because a larger target to the chest wall distance is usually ob- served in patients with larger breast volume. Also note that in Spearman correlation analysis, smaller correl- ation coefficients ρ were always obtained for BV, and specifically for composite total error. Upon multivariate analysis, Dchest was the only clinical factor that is statis- tically significant to geometric errors. Therefore, com- pared with BV, Dchest is a clinical factor more relevant to breast geometric errors. Additional margin expansion may be needed for patients with tumors located far from the chest wall. Received: 5 June 2017 Accepted: 6 September 2017 Received: 5 June 2017 Accepted: 6 September 2017 We comprehensively analyzed breast target geometric errors by using the real-time recorded fiducial marker positions on a Cyberknife system. The analysis results show that non-rigid and rigid errors are comparable. Upon the margin estimation, the non-rigid margin is similar to rigid margin, and therefore should be included in PTV as it cannot be accounted for by the Cyberknife system. In S-PBI, the outer breast quadrants were more susceptible to target geometric errors than the inner breast quadrants during S-PBI. The target to the chest wall distance is the clinical factor that correlated with breast target geometric errors. Additional file Additional file 1: Appendix A. 2D fiducial coordinates to 3D fiducial position conversion. Appendix B. Margin calculations. Appendix C. Multivariate linear regression model. (DOCX 29 kb) 6. Bentzen SM, Yarnold JR. Reports of unexpected late side effects of accelerated partial breast irradiation–radiobiological considerations. Int J Radiat Oncol Biol Phys. 2010;77:969–73. 6. Bentzen SM, Yarnold JR. Reports of unexpected late side effects of accelerated partial breast irradiation–radiobiological considerations. Int J Radiat Oncol Biol Phys. 2010;77:969–73. Acknowledgements 7. Obayomi-Davies O, Kole TP, Oppong B, Rudra S, Makariou EV, Campbell LD, Anjum HM, Collins SP, Unger K, Willey S, et al. Stereotactic accelerated partial breast irradiation for early-stage breast cancer: rationale, feasibility, and early experience using the CyberKnife radiosurgery delivery platform. Front Oncol. 2016;6:129. Acknowledgements We thank Dr. Damiana Chiavolini for editing the manuscript. g We thank Dr. Damiana Chiavolini for editing the manuscript. Consent for publication Not applicable. Consent for publication Not applicable. Ethics approval and consent to participate This retrospective patient study was approved by Human Research Protection Program Office (HRPPO)/Institutional Review Board (IRB) of The University of Texas Southwestern Medical Center. All methods in this study were conducted in accordance with the relevant guidelines and regulations. Considering that this is not a therapeutical treatment study, our institutional review board waived the need for obtaining written informed consent from the participants. Funding This work is funded by a grant from Accuray. 8. Vermeulen SS, Haas JA. CyberKnife stereotactic body radiotherapy and CyberKnife accelerated partial breast irradiation for the treatment of early breast cancer. Transl Cancer Res. 2014;3:295–302. 8. Vermeulen SS, Haas JA. CyberKnife stereotactic body radiotherapy and CyberKnife accelerated partial breast irradiation for the treatment of early breast cancer. Transl Cancer Res. 2014;3:295–302. 9. Rahimi A, Thomas K, Spangler A, Rao R, Leitch M, Wooldridge R, Rivers A, Seiler S, Albuquerque K, Stevenson S, et al. Preliminary results of a phase 1 Zhen et al. Radiation Oncology (2017) 12:151 Zhen et al. Radiation Oncology (2017) 12:151 dose-escalation trial for early-stage breast cancer using 5-fraction stereotactic body radiation therapy for partial-breast irradiation. Int J Radiat Oncol Biol Phys. 2017;98:196–205.e192. dose-escalation trial for early-stage breast cancer using 5-fraction stereotactic body radiation therapy for partial-breast irradiation. Int J Radiat Oncol Biol Phys. 2017;98:196–205.e192. dose-escalation trial for early-stage breast cancer using 5-fraction stereotactic body radiation therapy for partial-breast irradiation. Int J Radiat Oncol Biol Phys. 2017;98:196–205.e192. 10. Yue NJ, Goyal S, Zhou J, Khan AJ, Haffty BG. Intrafractional target motions and uncertainties of treatment setup reference systems in accelerated partial breast irradiation. Int J Radiat Oncol Biol Phys. 2011;79:1549–56. 11. Park CK, Pritz J, Zhang GG, Forster KM, Harris EE. Validating fiducial markers for image-guided radiation therapy for accelerated partial breast irradiation in early-stage breast cancer. Int J Radiat Oncol Biol Phys. 2012;82:e425–31. 12. Trovo M, Polesel J, Biasutti C, Sartor G, Roncadin M, Trovo GM. Fiducial markers for image-guided partial breast irradiation. Radiol Med. 2013;118: 1212–9. 13. Yue NJ, Goyal S, Kim LH, Khan A, Haffty BG. Patterns of intrafractional motion and uncertainties of treatment setup reference systems in accelerated partial breast irradiation for right- and left-sided breast cancer. Pract Radiat Oncol. 2014;4:6–12. 14. Yamashita H, Okuma K, Tada K, Shiraishi K, Takahashi W, Shibata-Mobayashi S, Sakumi A, Saotome N, Haga A, Onoe T, et al. Four-dimensional measurement of the displacement of internal fiducial and skin markers during 320-multislice computed tomography scanning of breast cancer. Int J Radiat Oncol Biol Phys. 2012;84:331–5. 15. Seiler S, Rahimi A, Choudhery S, Garwood D, Spangler A, Cherian S, Goudreau S. Ultrasound-guided placement of gold Fiducial markers for stereotactic partial-breast irradiation. AJR Am J Roentgenol. 2016;207:685–8. 16. Kilby W, Dooley JR, Kuduvalli G, Sayeh S, Maurer CR Jr. The CyberKnife robotic Radiosurgery system in 2010. Technol Cancer Res Treat. 2010;9:433–52. 17. Horn BKP. Closed-form solution of absolute orien quaternions. J Opt Soc Am A. 1987;4:629–42. 17. Horn BKP. Closed-form solution of absolute orientation using unit quaternions. J Opt Soc Am A. 1987;4:629–42. 18. Zhang Q, Xiong W, Chan MF, Song Y, Burman C. Rotation effects on the target-volume margin determination. Physica Medica. 2015;31:80–4. 19. R Core Team. R: a language and environment for statistical computing. 3.3. 0. Vienna: R Foundation for Statistical Computing; 2016. 0. Vienna: R Foundation for Statistical Computing; 2016. 20. Martyn P, Alexey S, Matt D. Bayesian Graphical Models using MCMC. Availability of data and materials 9. Rahimi A, Thomas K, Spangler A, Rao R, Leitch M, Wooldridge R, Rivers A, Seiler S, Albuquerque K, Stevenson S, et al. Preliminary results of a phase 1 The datasets analyzed during the current study are available from the corresponding author on reasonable request. Page 8 of 8 Page 8 of 8 Zhen et al. Radiation Oncology (2017) 12:151 4–6 ed; 2016. 21. Acharya S, Fischer-Valuck BW, Mazur TR, Curcuru A, Sona K, Kashani R, Green O, Ochoa L, Mutic S, Zoberi I, et al. Magnetic resonance image guided radiation therapy for external beam accelerated partial-breast irradiation: evaluation of delivered dose and intrafractional cavity motion. Int J Radiat Oncol Biol Phys. 2016;96:785–92. 22. van Heijst TC, Philippens ME, Charaghvandi RK, den Hartogh MD, Lagendijk JJ, van den Bongard HJ, van Asselen B. Quantification of intra-fraction motion in breast radiotherapy using supine magnetic resonance imaging. Phys Med Biol. 2016;61:1352–70. 23. Leonard CE, Tallhamer M, Johnson T, Hunter K, Howell K, Kercher J, Widener J, Kaske T, Paul D, Sedlacek S, Carter DL. Clinical experience with image-guided radiotherapy in an accelerated partial breast intensity-modulated radiotherapy protocol. Int J Radiat Oncol Biol Phys. 2010;76:528–34. 24. Kim LH, Wong J, Yan D. On-line localization of the lumpectomy cavity using surgical clips. Int J Radiat Oncol Biol Phys. 2007;69:1305–9. 24. Kim LH, Wong J, Yan D. On-line localization of the lumpectomy cavity using surgical clips. Int J Radiat Oncol Biol Phys. 2007;69:1305–9. • We accept pre-submission inquiries • Our selector tool helps you to find the most relevant journal • We provide round the clock customer support • Convenient online submission • Thorough peer review • Inclusion in PubMed and all major indexing services • Maximum visibility for your research Submit your manuscript at www.biomedcentral.com/submit Submit your next manuscript to BioMed Central and we will help you at every step: Submit your next manuscript to BioMed Central and we will help you at every step: • We accept pre-submission inquiries • Our selector tool helps you to find the most relevant journal • We provide round the clock customer support • Convenient online submission • Thorough peer review • Inclusion in PubMed and all major indexing services • Maximum visibility for your research Submit your manuscript at www.biomedcentral.com/submit Submit your next manuscript to BioMed Central and we will help you at every step: • We accept pre-submission inquiries
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A Prospective Study: Current Problems in Radiotherapy for Nasopharyngeal Carcinoma in Yogyakarta, Indonesia
PloS one
2,014
cc-by
5,977
Abstract The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript. Competing Interests: Co-author P. Wildeman is affiliated to ValueCare BV, an auditing company. There are no patents, products in development or marketed products to declare. This does not alter the authors’ adherence to all the PLOS ONE policies on sharing data and materials. * E-mail: i.tan@nki.nl Sharon D. Stoker1, Maarten A. Wildeman1,2, Renske Fles1, Sagung R. Indrasari3, Camelia Herdini3, Pieter L. Wildeman4, Judi N. A. van Diessen5, Maesadji Tjokronagoro6, I. Bing Tan1,2,7* Sharon D. Stoker1, Maarten A. Wildeman1,2, Renske Fles1, Sagung R. Indrasari3, Camelia Herdini3, Pieter L. Wildeman4, Judi N. A. van Diessen5, Maesadji Tjokronagoro6, I. Bing Tan1,2,7* 1 Department of head and neck oncology and Surgery, The Netherlands Cancer Institute, Amsterdam, The Netherlands, 2 Department of otorhinolaryngology, Academic Medical Centre, Amsterdam, the Netherlands, 3 Department of otorhinolaryngology, Dr Sardjito General Hospital/Faculty of Medicine Universitas Gadjah Mada, Yogyakarta, Indonesia, 4 ValueCare BV, Utrecht, The Netherlands, 5 Department of radiation and oncology, The Netherlands Cancer Institute, Amsterdam, The Netherlands, 6 Department of radiotherapy, Dr Sardjito General Hospital/Faculty of Medicine, Universitas Gadjah Mada, Yogyakarta, Indonesia, 7 Department of oral and maxillofacial surgery, Academic Medical Centre, Amsterdam, the Netherlands Abstract Introduction: Nasopharyngeal carcinoma (NPC) has a high incidence in Indonesia. Previous study in Yogyakarta revealed a complete response of 29% and a median overall survival of less than 2 years. These poor treatment outcome are influenced by the long diagnose-to-treatment interval to radiotherapy (DTI) and the extended overall treatment time of radiotherapy (OTT). This study reveals insight why the OTT and DTI are prolonged. Method: All patients treated with curative intent radiotherapy for NPC between July 2011 until October 2012 were included. During radiotherapy a daily diary was kept, containing information on DTI, missed radiotherapy days, the reason for missing and length of OTT. Results: Sixty-eight patients were included. The median DTI was 106 days (95% CI: 982170). Fifty-nine patients (87%) finished the treatment. The median OTT for radiotherapy was 57 days (95% CI: 57–65). The main reason for missing days was an inoperative radiotherapy machine (36%). Other reasons were patient’s poor condition (21%), public holidays (14%), adjustment of the radiation field (7%), power blackout (3%), inoperative treatment planning system (2%) and patient related reasons (9%). Patient’s insurance type was correlated to DTI in disadvantage for poor people. Conclusion: Yogyakarta has a lack of sufficient radiotherapy units which causes a delay of 3–4 months, besides the OTT is extended by 10–12 days. This influences treatment outcome to a great extend. The best solution would be creating sufficient radiotherapy units and better management in health care for poor patients. The growing economy in Indonesia will expectantly in time enable these solutions, but in the meantime solutions are needed. Solutions can consist of radiation outside office hours, better maintenance of the facilities and more effort from patient, doctor and nurse to finish treatment in time. These results are valuable when improving cancer care in low and middle income countries. Received June 21, 2013; Accepted November 29, 2013; Published January 23, 2014 opyright:  2014 Stoker et al. This is an open-access article distributed under the terms of the Creative Commons Attribution L restricted use, distribution, and reproduction in any medium, provided the original author and source are credited. ker et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits tion, and reproduction in any medium, provided the original author and source are credited. Funding: This work was supported by the Dutch Cancer Foundation, project number 2008-4233. PLOS ONE | www.plosone.org Citation: Stoker SD, Wildeman MA, Fles R, Indrasari SR, Herdini C, et al. (2014) A Prospective Carcinoma in Yogyakarta, Indonesia. PLoS ONE 9(1): e85959. doi:10.1371/journal.pone.0085959 Citation: Stoker SD, Wildeman MA, Fles R, Indrasari SR, Herdini C, et al. (2014) A Prospective Study: Current Problems in Radiotherapy for Nasopharyngeal Carcinoma in Yogyakarta, Indonesia. PLoS ONE 9(1): e85959. doi:10.1371/journal.pone.0085959 Statistical Analysis The major statistical endpoint of this study was the total number of radiotherapy days wherein all fractions of radiotherapy were administered. An assessment was made on the number of missed days and why this delay occurred. A comparison was made between patient and hospital related factors. Data Collection Two important problems encountered in the studies in Yogyakarta were a diagnosis-to-treatment-interval of approxi- mately 4 months and an overall radiotherapy treatment time of 62 days, which is 15–17 days too long. Optimally, a total dose of 66 to 70 Gray should be given in 33 to 35 fractions in a maximum 45 to 47 days. For each day by which radiotherapy treatment is extended, effective dose is lost, and the success rate declines rapidly [9–11]. The diagnosis-to-treatment interval (DTI) was calculated from the date a positive biopsy was obtained to the date radiotherapy was initiated. The overall treatment time (OTT) was calculated from time of radiotherapy initiation to the last day the patients received radiotherapy. During radiotherapy treatment, a nurse monitored daily the treatment of each patient and collected these data in a record form. This contained information on age, insurance type, the start date of radiotherapy and information on which days the patient did or did not get radiated. If the patient missed a treatment day, the reason for the missing day was recorded. As greater insight into the current problems in Indonesia’s cancer-care system might support the search for solutions, this study aims to explore reasons for the extended overall radiother- apy treatment time (OTT). Also the actual length of the OTT and the diagnose-to-treatment interval (DTI) are evaluated and factors that influenced these will be identified. In particularly, the association with type of insurance was investigated, since there is a wide variation in patient’s financial resources and these might have a great impact on DTI and OTT. Methods Secondary endpoint of this study was the length of the DTI. Both DTI and OTT were evaluated for correlation to insurance type. The insurance system in Indonesia is complex and differs per district. In general Yogyakarta has three types of insurances; jamkesmas (insurance for poor people), askes (insurance for civil servants) and patients with self-finance health care. Jamkesmas is a tax-funded health insurance, providing free health services in community health centres (puskesmas) and 3rd class (basic level) wards in government hospitals and some designated private hospitals. Expenses of health care will be paid if the head of the area confirms that the patient and the family have no resources and when the responsible doctor clarifies the need for health care. These approvals are time consuming and can cause a delay in diagnosis and treatment. Askes insurance is for civil servants, they contribute two per cent of their salaries and the government matches the contribution and covers almost all the diagnostic procedures and treatments [12]. Almost half of the Indonesian health care expenses are private health expenditures. This includes out of the pocket payment, private social insurance and other private insurance [13]. In this study we refer to these patients with the term ‘self-finance’. Table 1. Patient and tumor characteristics. Table 1. Patient and tumor characteristics. To test for differences in distribution between the three insurance types the Kruskal Wallis test was used. When a difference was found the Mann-Whitney U was used to identify which group differed. For statistic analysis SPSS version 20 was used and a p-value of less than p = 0.05 was defined as significant. Introduction minority reported about the actual problems [3–5]. Before cancer care in these countries can be improved, research should focus on the current limitations in these health-care systems. Cancer is the leading cause of death worldwide. About 70% of all cancer deaths occur in middle and low-income countries [1]. Although this burden increases every year, health-care systems in these countries are even at present not prepared for the high number of patients. In high-income countries survival rates are increasing due to improving treatment facilities and protocols, while low-income countries lack facilities and medication. Besides, funding for research on how to cope with these limitations is missing. The gap in treatment results between high-income and low-income countries is therefore widening [2]. Indonesia is a low to middle-income country in which nasopharyngeal cancer (NPC) is one of the commonest types of cancer. Although NPC is highly sensitive to radiotherapy and chemo-radiotherapy, a previous study in Yogyakarta, Indonesia showed that the complete treatment response was less than 29% directly after therapy, compared to a 3-year-disease-free survival of 70% in international studies. Furthermore, the median overall survival in Yogyakarta was less than 2 years (21 months), compared to a 3-year overall survival of 80% in international literature [6–8]. While many politicians and scientists have emphasized the need to improve cancer care in low and middle-income countries, only a January 2014 | Volume 9 | Issue 1 | e85959 1 PLOS ONE | www.plosone.org January 2014 | Volume 9 | Issue 1 | e85959 Patient Population p An official letter with confirmation of exemption of review was obtained from the medical ethical board of Dr. Sardjito Hospital, Universitas Gadjah Mada, Yogyakarta. All patients treated with curative intent radiotherapy for NPC in the period from July 2011 until October 2012 in Dr. Sardjito Hospital were included in this study. Sixty-eight patients were analyzed for inclusion. One patient never started radiotherapy and was excluded from all analysis. A total of 67 patients met the inclusion criteria. Information on patient characteristics was obtained by the medical chart. All data was analyzed anonymously. In table 1, patient characteristics and stage of disease are shown. Staging was performed by CT-scan of the head and neck, ultrasound of the abdomen, x-ray of the thorax and a bone scan. The median age was 47 years. Stage at diagnosis was available for 60 patients, advanced stage was predominantly seen. All patients were treated with 2D and/or 3D external beam radiotherapy in fractions of 2 Gray to a total dose 60–72 Gray. Table 1. Patient and tumor characteristics. Category Subcategory N = 67 Sex Male 47 70% Female 20 30% Median age 47 IQR 40-60 Insurance type Jamkesmas insurance (poor) 15 22% Askes insurance (civil servants) 14 21% Self finance 38 57% AJCC-stage I 1 1% IIa 1 1% IIb 4 6% II 22 33% IVa 11 16% IVb 21 31% Missing 7 10% IQR = inter quartile range. doi:10.1371/journal.pone.0085959.t001 Overall Treatment Time This is the first study showing that the DTI and the OTT for radiotherapy in Indonesia are extended compared to international standards. This can be an explanation for the poor treatment outcome of NPC in Yogyakarta. At present, the answer to locally advanced NPC, which is one of the most common cancers in Indonesia, is concurrent chemo-radiation. Chemotherapy can be administered in most well equipped hospitals within Indonesia, whereas radiotherapy for most patients is limited. In several centres radiotherapy can be administered according to interna- tional standards, but the scarcity makes this only available for a very limited number of patients. In 2008 there were 25 units (accelerator and cobalt) available in Indonesia with a population of 229 million, whereas 6 were under commission, resulting in 0.13 units per million inhabitants [14]. This is in stark contrast with Europe, where in high-resource countries 5.5 accelerators are available per million inhabitants, 3.5 in medium-resource coun- tries, and 2 per million in low resource countries [15]. The recommended number of treatment units per population differs widely; European guidelines recommend on average 5.9 units per million inhabitants [16,17]. For 59 patients the OTT was analysed. The median OTT was 57 days. In total 584 days were missed, with a mean of 10 days per patient. A difference in median and mean OTT was seen between the different types of insurance, in favour of the patients with self finance (table 4, and figure 2). Kruskal Wallis test showed no significant difference (p = 0.28). One patient with jamkesmas insurance (*37 in figure 2) had an OTT of 144 days due to a poor physical condition. Excluding his patient did not change the significance of OTT versus insurance type. Table 5 presents the reasons for the missed days of treatment per category. An inoperative radiotherapy machine was the most frequent seen reason for missing treatment days. On 31 days the treatment planning system (TPS) was inoperative or there was a power black out. Forty-three patients (73%) missed one or more days because of problems with the facilities; an inoperative radiotherapy machine, TPS or a power black out. The poor physical condition of the patient was the next most frequent reason for treatment extension, 23 patients (39%) were delayed because of their clinical condition. In all these cases the poor condition was related to therapy or treatment. Diagnosis-to-treatment Interval The precise date of biopsy proven diagnosis of NPC could not be retrieved in 3 patients. These patients were excluded for calculation of DTI. The median DTI was 106 days (IQR 53-66). Table 2 presents the median DTI and the start day of the radiotherapy treatment. Table 3 presents the day on which the radiotherapy was initiated. A difference in median and mean DTI was seen between the different types of insurance (table 2, figure 1). Kruskal Wallis test showed a significant difference between the three types of insurance (p = 0.003). Mann-Whitney U test showed that patient’s with jamkesmas insurance had a significant longer DTI than patients who had askes insurance (p = 0.016) and who financed their health care themselves (p = 0.001). Although a difference of 68 days between askes and self finance was seen, no significant difference was found (p = 0.325). One patient with private insurance had an interval to radiotherapy of 922 days (*62 in figure 1). She went first for alternative treatment with herbal medicine. Excluding this patient will make the differences between the insurance types stronger, although for askes versus self finance still no significance was achieved (p = 0.243). When 2-dimension radiotherapy is given the radiation field has to be adjusted after 40 Gray to protect the spinal cord, 26 patients (44%) missed one or more days because of these adjustments. Patient related causes for a prolonged treatment were seen in 10,5%. Reasons were an extra day off after calendar holidays (n = 7, 17 days), to take care of their family (n = 2, 3 days), because of lack of financial resources to pay for the treatment or transport to the hospital (n = 4, 29 days) and 1 patient had a motor accident (n = 1, 6 days). Other reasons were miscommunications about the moment when facilities were in progress again (n = 2, 2 days), a shift from 2 dimensional radiation to 3 dimensional radiation (n = 1, 1 day) or problems with the chemotherapy (n = 2, 7 days). Patients Sixty-eight patients were evaluated for inclusion in this study. One patient was excluded because she never started radiotherapy because of a poor physical condition, accordingly 67 patients were included. The median age was 47 years (range 9–81, inter quartile range (IQR) 40–60). Type of insurance was distributed as followed; 38 patients (57%) financed their health care themselves, 15 patients (22%) had jamkesmas insurance and 14 patients (21%) had askes insurance. Type of insurance was distributed as followed; 38 patients (57%) financed their health care themselves, 15 patients (22%) had jamkesmas insurance and 14 patients (21%) had askes insurance. Fifty-nine patients finished radiotherapy treatment. Eight patients did not finish treatment; of them 4 patients refused further treatment due to anxiety for side effects, 1 patient went to another hospital, 1 patient died after 12 fractions of radiotherapy and 2 patients never returned to the hospital for unknown reason. Fifty-nine patients finished radiotherapy treatment. Eight patients did not finish treatment; of them 4 patients refused further treatment due to anxiety for side effects, 1 patient went to another hospital, 1 patient died after 12 fractions of radiotherapy and 2 patients never returned to the hospital for unknown reason. One patient received 18 Gray from March to April 2011, but then stopped for unknown reasons and started treatment again in PLOS ONE | www.plosone.org 2 January 2014 | Volume 9 | Issue 1 | e85959 Radiotherapy Problems for Nasopharyngeal Carcinoma Table 3. Day of initiation of the radiotherapy treatment. Start day (n = 67) Number of patients (percentage) Monday 26 (39%) Tuesday 13 (19%) Wednesday 15 (22%) Thursday 12 (18%) Friday 1 (2%) doi:10.1371/journal.pone.0085959.t003 Table 3. Day of initiation of the radiotherapy treatment. September 2011 and received another 70 Gray. In this case, for calculation of DTI the start date of the first treatment was used. For OTT and analysis of the missed days the second course was used. January 2014 | Volume 9 | Issue 1 | e85959 Overall Treatment Time The third most frequent reason was calendar holidays, 39 patients (66%) were delayed for this matter. The vast lack of equipment, inadequate treatment procedures and preferential treatments for patients with self finance insurance results in excessive waiting lists. The very wealthy patients choose to receive their treatment in hospitals abroad, resulting in an outflow of substantial health care dollars to adjacent countries such as Malaysia, Singapore, and Australia [18]. Due to this loss in health care dollars, the less fortunate individuals cannot receive this quality of treatment. Currently, the Indonesian government offers a reimbursement for lower incomes, placing even more pressure on waiting lists [12]. Table 2. Diagnosis-to-treatment interval. DTI in days Median in days Mean in days Total (n = 64) 106 (IQR 38–176) 134 (95% CI: 982170) Jamkesmas insurance (poor) 192 (IQR 125–279) 214 (95% CI: 1432284) Askes insurance (civil servants) 122 (IQR 51–143) 107 (95% CI: 722143) Self finance 54 (IQR 24–136) 111 (95% CI: 552167) DTI = diagnosis-to-treatment interval. doi:10.1371/journal.pone.0085959.t002 Table 2. Diagnosis-to-treatment interval. DTI in days Median in days Mean in days Total (n = 64) 106 (IQR 38–176) 134 (95% CI: 982170) Jamkesmas insurance (poor) 192 (IQR 125–279) 214 (95% CI: 1432284) Askes insurance (civil servants) 122 (IQR 51–143) 107 (95% CI: 722143) Self finance 54 (IQR 24–136) 111 (95% CI: 552167) DTI = diagnosis-to-treatment interval. doi:10.1371/journal.pone.0085959.t002 Table 2. Diagnosis-to-treatment interval. In this study the median DTI was 3 to 6 months (95% CI for all patients). This is too long when comparing to international standards, with quality indicators of DTI of maximum 1 month [19]. Chen at al. showed in a systematic review that a delay in starting radiotherapy for head and neck cancer was significantly associated with higher recurrence rates and lower survival. They January 2014 | Volume 9 | Issue 1 | e85959 PLOS ONE | www.plosone.org 3 Radiotherapy Problems for Nasopharyngeal Carcinoma Figure 1. Distribution of diagnose-to-treatment interval and insurance type. doi:10.1371/journal.pone.0085959.g001 Figure 2. Distribution of overall treatment time and insurance type. The dark line in the middle of the b top of the boxes indicate the 25th and the 75th percentile. The T-bars are the inner fences of all subjects and ex inter quartile range. * are outliers until 3 times the inter quartile range. 0 are outliers exceeding 3 times the qu doi:10.1371/journal.pone.0085959.g002 py Figure 1. Distribution of diagnose-to-treatment interval and insurance type. doi:10.1371/journal.pone.0085959.g001 Figure 1. Radiotherapy Problems for Nasopharyngeal Carcinoma With the intervals presented in our study and the high number of patients with already advanced disease at diagnosis, the risk on recurrence and poor survival is expectantly even higher, since the higher possibility of disease progression to an even more advanced stage [21,22]. In a sequel study we would like to reveal the disease progression during the waiting time, since we expect that a number of patients might have progression to a incurable stage. found an absolute increase in the risk of local recurrence of 3,7% per month delay [20]. The median intervals presented in those studies were all less than 2 months. With the intervals presented in our study and the high number of patients with already advanced disease at diagnosis, the risk on recurrence and poor survival is expectantly even higher, since the higher possibility of disease progression to an even more advanced stage [21,22]. In a sequel study we would like to reveal the disease progression during the waiting time, since we expect that a number of patients might have progression to a incurable stage. The next most frequent reason for an extended OTT was the patient’s physical condition due to the disease and side effects of the treatment. A next study has to investigate the actual physical problems, to find interventions to keep the patients fitter during treatment. By our experience we know that the nutritional status of some patients is poor and might worsen due to low intake by swallowing problems due to side effects of the treatment. To decrease the number of missed days due to patient’s condition, protocols to be more aggressive with earlier start of tube feeding and/or anti-fungal treatment of oral mucositis might give improvement. The length of DTI was associated with type of insurance. Poor patients with jamkesmas insurance had significantly longer delay to treatment, varying between 5 to 9 months (95% CI). This might be caused by the management of healthcare within jamkesmas insurance. After the positive biopsy for NPC, staging has to be performed by CT-scan of the head and neck region, ultra sound of the abdomen, bone scan and x-ray of the thorax. With jamkesmas insurance the government and treating doctor have to give approval for every diagnostic investigation and treatment. A solution to overcome this problem could be a diagnostic package deal, including all needed studies when biopsy is proven positive for NPC. Overall Treatment Time Distribution of diagnose-to-treatment interval and insurance type. doi:10.1371/journal.pone.0085959.g001 Figure 2. Distribution of overall treatment time and insurance type. The dark line in the middle of the boxes is the median. The bottom and top of the boxes indicate the 25th and the 75th percentile. The T-bars are the inner fences of all subjects and extend to a maximum of 1.5 times the inter quartile range. * are outliers until 3 times the inter quartile range. 0 are outliers exceeding 3 times the quartile range. doi:10.1371/journal.pone.0085959.g002 Figure 2. Distribution of overall treatment time and insurance type. The dark line in the middle of the boxes is the median. The bottom and top of the boxes indicate the 25th and the 75th percentile. The T-bars are the inner fences of all subjects and extend to a maximum of 1.5 times the inter quartile range. * are outliers until 3 times the inter quartile range. 0 are outliers exceeding 3 times the quartile range. doi:10.1371/journal.pone.0085959.g002 January 2014 | Volume 9 | Issue 1 | e85959 PLOS ONE | www.plosone.org 4 Radiotherapy Problems for Nasopharyngeal Carcinoma Radiotherapy Problems for Nasopharyngeal Carcinoma Table 4. Overall treatment time and missed days. start within 2 weeks. Adaptations in the management for the poor will be beneficial in reducing the delay to complete diagnosis, but the absence of sufficient radiation units will still be a problem. OTT in days (n = 59) Median in days Mean in days Total 57 (IQR 53266) 61 (95% CI: 57–65) Jamkesmas insurance (poor) 59 (IQR 57266) 68 (95% CI: 53–83) Askes insurance (civil servants) 58 (IQR 51266) 58 (95% CI: 52–64) Self finance 56 (IQR 52264) 59 (95% CI: 55–63) Number of missed days per patient 8 (IQR 4213) 10 (95% CI: 8–12) Dose (in Gray) 66 (range 60–72) 67 (95% CI: 66-68) OTT = overall treatment time, IQR = inter quartile range, CI = confidence interval. doi:10.1371/journal.pone.0085959.t004 The OTT was 57 days, 10–12 days longer than recommended. Optimally, a total dose of 66 to 70 Gray should be given in 33 to 35 fractions and the best therapy response is achieved when the total dose is administered in 45 to 47 days. Each day of prolongation of the radiotherapy has a detrimental effect by a loss of the effective dose. During prolonged intervals tumour cells repopulate and will therefore influence the treatment success to a great extent [9,10,23]. Platek et al. presented in patients treated with radiation for head and neck cancer, an 8-fold increase on loco-regional progression if treatment time was prolonged to .57 days gave. Their results are in accordance to literature were the detrimental effect of treatment interruption on survival and local control vary between 1–5% per day [23]. The main reasons for the prolonged OTT were the radiother- apy facilities being intermittently operational (48% of the days were missed due to inoperative radiotherapy machines or treatment planning system, power black out and readjustment of radiation field). The hospital is already aware of the intermittently operating radiotherapy facility and got a maintenance contract for the radiation unit 4 months before start of this study. This contract is still going on. We see some improvement when comparing to earlier data of an OTT of 62 days, although better maintenance is still needed [6]. found an absolute increase in the risk of local recurrence of 3,7% per month delay [20]. The median intervals presented in those studies were all less than 2 months. Radiotherapy Problems for Nasopharyngeal Carcinoma Patient-related delay accounted for only a small fraction of the delay, although still 22% of the patients missed days due to this reason (in total 55 days for 13 patients). Remarkable is that the OTT of 57 days is 5 days shorter than in the previous study conducted in Yogyakarta. This can be the result of the maintenance contract for the radiotherapy facilities as noted before or of a reduction in patient related delay, due to the committed attention of the monitoring nurse, who phoned the patient when they did not show up for treatment. With more awareness of the patients on the importance of a short OTT, the number of patient-related missed treatment days can be reduced further. repeated after the long waiting time, just before start of radiotherapy, since patients with distant metastasis are beyond cure and will be better served with adequate palliation. By only treating patients with a fair chance for cure the waist of limited resources can be prevented and shorten the waiting time. The best way to address the current concerns in Indonesia should be to create sufficient radiotherapy facilities with well- trained staff, and raise awareness on the effect of an extended DTI and OTT. The growing economy in Indonesia will expectantly in time, enable these solutions, although it will take at least a decade to accomplish this, since also bunkers has to be build and doctors, nurses and technical staff have to be trained. In the meantime small-scale and easy to implement solutions are needed. Possible solutions could be more radiation hours per treatment unit outside office hours, in weekends and on holidays, better maintenance of the treatment units and planning system, including a power back up system and more awareness and dedication of the doctor, patient and nurse to complete the treatment in 47 days. We think that the problems found in this study are not specific for the treatment of nasopharyngeal cancer in Yogyakarta, Indonesia only. Also when treating other types of cancer which need radiation treatment or in other regions with comparable health systems, the same problems might be encountered. Therefore, these results can be helpful when facing the challenges in improving the treatment of cancer in other low- and middle income countries. Differences between the types of insurance were found for OTT, although not significant (56, 58, 59 days, respectively self finance, askes and jamkesmas). References 11. Kwong DL, Sham JS, Chua DT, Choy DT, Au GK, et al. (1997) The effect of interruptions and prolonged treatment time in radiotherapy for nasopharyngeal carcinoma. Int J Radiat Oncol Biol Phys 39: 703–710. 1. Boyle P, Levin B (2008) World Cancer Report 2008; IARC Library Cataloguing in Publication Data. 1. Boyle P, Levin B (2008) World Cancer Report 2008; IARC Library Cataloguing in Publication Data. 2. Soerjomataram I, Lortet-Tieulent J, Parkin DM, Ferlay J, Mathers C, et al. (2012) Global burden of cancer in 2008: a systematic analysis of disability- adjusted life-years in 12 world regions. Lancet 380: 1840–1850. 12. Satriana S, Schmitt V (2012) Social protection assessment based national dialogue: Towards a nationally defined social protection floor in Indonesia/ International Labour Organization. Available at: http://www.ilo.org/jakarta/ whatwedo/publications/WCMS_195572/lang-en/index.htm. Accesed at April 2013. j y g 3. Kimman M, Norman R, Jan S, Kingston D, Woodward M (2012) The burden of cancer in member countries of the Association of Southeast Asian Nations (ASEAN). Asian Pac J Cancer Prev 13: 411–420. 13. Tangcharoensathien V, Patcharanarumol W, Ir P, Aljunid SM, Mukti AG, et al. (2011) Health-financing reforms in southeast Asia: challenges in achieving universal coverage. Lancet 377: 863–873. 4. Anderson BO, Cazap E, El Saghir NS, Yip CH, Khaled HM, et al. (2011) Optimisation of breast cancer management in low-resource and middle-resource countries: executive summary of the Breast Health Global Initiative consensus, 2010. Lancet Oncol 12: 387–398. g 14. Gondhowiardjo S, Prajogi G, Sekarutami S (2008) History a 14. Gondhowiardjo S, Prajogi G, Sekarutami S (2008) History and growth of radiation oncology in Indonesia. Biomed Imaging Interv J 4: e42. 5. Farmer P, Frenk J, Knaul FM, Shulman LN, Alleyne G, et al. (2010) Expansion of cancer care and control in countries of low and middle income: a call to action. Lancet 376: 1186–1193. 15. Slotman BJ, Cottier B, Bentzen SM, Heeren G, Lievens Y, et al. (2005) Overview of national guidelines for infrastructure and staffing of radiotherapy. ESTRO-QUARTS: work package 1. Radiother Oncol 75: 349–354. 6. Wildeman MA, Fles R, Herdini C, Indrasari SR, Vincent AD, et al. (2013) Primary treatment results of Nasopharyngeal Carcinoma (NPC) in Yogyakarta, Indonesia. PLoS One ‘‘in press’’. 16. Bentzen SM, Heeren G, Cottier B, Slotman B, Glimelius B, et al. (2005) Towards evidence-based guidelines for radiotherapy infrastructure and staffing needs in Europe: the ESTRO QUARTS project. Radiother Oncol 75: 355–365. 7. Author Contributions Conceived and designed the experiments: SS MW MT IBT. Performed the experiments: SS SI CH. Analyzed the data: SS MW RF PW JvD IBT. Contributed reagents/materials/analysis tools: SS. Wrote the paper: SS MW PW JvD IBT. Gave their critical vision on the text manuscript: RF SI CH MT. Conceived and designed the experiments: SS MW MT IBT. Performed the experiments: SS SI CH. Analyzed the data: SS MW RF PW JvD IBT. Contributed reagents/materials/analysis tools: SS. Wrote the paper: SS MW PW JvD IBT. Gave their critical vision on the text manuscript: RF SI CH MT. Radiotherapy Problems for Nasopharyngeal Carcinoma This implies that all patients suffer in the same amount from the factors contributing to an extended OTT. There might be a significant difference when the study population is larger, since there is a trend in benefit for the self finance group. The reason for this benefit could be that these wealthier patients might have more counselling during treatment, accordingly physical deterioration will be noticed earlier and they have sufficient resources for supplemental nutrition and blood transfusions. Patient related reasons, like no money for transport will also be less among the richer patients. With radiotherapy remaining the cornerstone of cancer treatment today, the results found here confirm that patient with NPC cannot be treated effectively. Probably, this also holds for the majority of other cancer patients, because most types of cancers need radiotherapy [24]. At the moment of initiation of radiother- apy the stage of disease might already be incurable. Full dose radiotherapy schedules for these patients have to be prevented. Future projects have to analyse if the current diagnostic system needs adjustments. Screening for distant metastasis should be Radiotherapy Problems for Nasopharyngeal Carcinoma This will shorten the DTI cause patients can be put on the waiting list for radiation earlier. Other causes for the delay in OTT were poor efficiency regarding calendar holidays. There were no schedule adaptations, like radiation in weekends or two times daily, to compensate for these days. Besides, half of the patients started on a Wednesday or later in the week. When 30-33 radiation days are needed, it is better to start on Monday or Tuesday, since the OTT will extend with two extra days by including an extra weekend in the schedule. Another reason for the difference between the insurance types is that more resourced patients get a priority treatment. There is a different waiting list for radiotherapy for every type of insurance. Patients who can pay the treatment out of the pocket can even Table 5. Reasons for missed treatment days. Table 5. Reasons for missed treatment days. Reason for missed days (n = 59) Number of missed days Percentage of total missed days Number of patients Percentage number of patients Radiation system was inoperative 212 36.3% 40 67.8% TPS was inoperative 11 1.9% 9 15.3% Black out 20 3.4% 14 23.7% Patient’s poor physical conditions 125 21.4% 23 39.0% Calendar holiday 83 14.2% 39 66.1% Adjustment of radiation field 40 6.8% 26 44.1% Patient related 55 9.4% 13 22.0% Other 10 1.7% 4 6.8% Unknown 28 4.8% 3 5.1% TPS = treatment planning system. doi:10.1371/journal.pone.0085959.t005 PLOS ONE | www.plosone.org 5 January 2014 | Volume 9 | Issue 1 | e85959 January 2014 | Volume 9 | Issue 1 | e85959 Radiotherapy Problems for Nasopharyngeal Carcinoma 23. Marks LB, Dewhirst M (1991) Accelerated repopulation: friend or foe? Exploiting changes in tumor growth characteristics to improve the ‘‘efficiency’’ of radiotherapy. Int J Radiat Oncol Biol Phys 21: 1377–1383. 24. Barton MB, Frommer M, Shafiq J (2006) Role of radiotherapy in cancer control in low-income and middle-income countries. Lancet Oncol 7: 584–595. References Al Sarraf M, LeBlanc M, Giri PG, Fu KK, Cooper J, et al. (1998) Chemoradiotherapy versus radiotherapy in patients with advanced nasopha- ryngeal cancer: phase III randomized Intergroup study 0099. J Clin Oncol 16: 1310–1317. 17. Rosenblatt E, Izewska J, Anacak Y, Pynda Y, Scalliet P, et al. (2013) Radiotherapy capacity in European countries: an analysis of the Directory of Radiotherapy Centres (DIRAC) database. Lancet Oncol 14: e79–e86. 8. Wee J, Tan EH, Tai BC, Wong HB, Leong SS, et al. (2005) Randomized trial of radiotherapy versus concurrent chemoradiotherapy followed by adjuvant chemotherapy in patients with American Joint Committee on Cancer/ International Union against cancer stage III and IV nasopharyngeal cancer of the endemic variety. J Clin Oncol 23: 6730–6738. 18. Jakarta Globe (2012) SBY Tells Indonesians To Stop Seeking Medical Treatment Abroad. Available at: http://www.thejakartaglobe.com/health/ sby-tells-indonesians-to-stop-seeking-medical-treatment-abroad/534677. Ac- cessed April 2013. 19. Waaijer A, Terhaard CH, Dehnad H, Hordijk GJ, van Leeuwen MS, et al. (2003) Waiting times for radiotherapy: consequences of volume increase for the TCP in oropharyngeal carcinoma. Radiother Oncol 66: 271–276. 9. Akimoto T, Mitsuhashi N, Hayakawa K, Sakurai H, Murata O, et al. (1997) Split-course accelerated hyperfractionation radiotherapy for advanced head and neck cancer: influence of split time and overall treatment time on local control. Jpn J Clin Oncol 27: 240–243. 20. Chen Z, King W, Pearcey R, Kerba M, Mackillop WJ (2008) The relationship between waiting time for radiotherapy and clinical outcomes: a systematic review of the literature. Radiother Oncol 87: 3–16. 10. Platek ME, McCloskey SA, Cruz M, Burke MS, Reid ME, et al. (2012) Quantification of the effect of treatment duration on local-regional failure after definitive concurrent chemotherapy and intensity-modulated radiation therapy for squamous cell carcinoma of the head and neck. Head Neck;35(5): 684–8. 21. Ho AC, Lee VH, To VS, Kwong DL, Wei WI (2011) Natural course and tumor doubling time of nasopharyngeal carcinoma. A study of 15 patients. Oral Oncol 47: 742–746. 22. Wei WI, Sham JS (2005) Nasopharyngeal carcinoma. Lancet 365: 2041–2054. 22. Wei WI, Sham JS (2005) Nasopharyngeal carcinoma. Lancet 365: 2041–2054. PLOS ONE | www.plosone.org January 2014 | Volume 9 | Issue 1 | e85959 6 January 2014 | Volume 9 | Issue 1 | e85959 Radiotherapy Problems for Nasopharyngeal Carcinoma PLOS ONE | www.plosone.org January 2014 | Volume 9 | Issue 1 | e85959 PLOS ONE | www.plosone.org 7 7
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LKB1 Destabilizes Microtubules in Myoblasts and Contributes to Myoblast Differentiation
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Abstract Background: Skeletal muscle myoblast differentiation and fusion into multinucleate myotubes is associated with dramatic cytoskeletal changes. We find that microtubules in differentiated myotubes are highly stabilized, but premature microtubule stabilization blocks differentiation. Factors responsible for microtubule destabilization in myoblasts have not been identified. Findings: We find that a transient decrease in microtubule stabilization early during myoblast differentiation precedes the ultimate microtubule stabilization seen in differentiated myotubes. We report a role for the serine-threonine kinase LKB1 in both microtubule destabilization and myoblast differentiation. LKB1 overexpression reduced microtubule elongation in a Nocodazole washout assay, and LKB1 RNAi increased it, showing LKB1 destabilizes microtubule assembly in myoblasts. LKB1 levels and activity increased during myoblast differentiation, along with activation of the known LKB1 substrates AMP- activated protein kinase (AMPK) and microtubule affinity regulating kinases (MARKs). LKB1 overexpression accelerated differentiation, whereas RNAi impaired it. Conclusions: Reduced microtubule stability precedes myoblast differentiation and the associated ultimate microtubule stabilization seen in myotubes. LKB1 plays a positive role in microtubule destabilization in myoblasts and in myoblast differentiation. This work suggests a model by which LKB1-induced microtubule destabilization facilitates the cytoskeletal changes required for differentiation. Transient destabilization of microtubules might be a useful strategy for enhancing and/ or synchronizing myoblast differentiation. Editor: Cara Gottardi, Northwestern University Feinberg School of Medicine, United States of America itor: Cara Gottardi, Northwestern University Feinberg School of Medicine, United States of America Received August 8, 2011; Accepted January 9, 2012; Published February 14, 2012 Copyright:  2012 Mian et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Funding: This work was funded from startup funds from the University of Connecticut Health Center. The funder had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript. Funding: This work was funded from startup funds from the University of Connecticut Health Center. The fund analysis, decision to publish, or preparation of the manuscript. Competing Interests: The authors have declared that no competing interests exist. * E-mail: tirnauer@uchc.edu Competing Interests: The authors have declared that no competing interests exist. * E-mail: tirnauer@uchc.edu . These authors contributed equally to this work. . These authors contributed equally to this work. Isma Mian1., Willythssa Ste´phie Pierre-Louis1., Neha Dole1, Rene´e M. Gilberti1, Kimberly Dodge-Kafka2, Jennifer S Tirnauer1* 1 Center for Molecular Medicine and University of Connecticut Health Center, Farmington, Connecticut, United States of America, 2 Calhoun Center for Cardiology, University of Connecticut Health Center, Farmington, Connecticut, United States of America PLoS ONE | www.plosone.org February 2012 | Volume 7 | Issue 2 | e31583 Microtubule stabilization prevents myoblast differentiation Differentiated myotubes show dramatically stabilized microtu- bules. If simple microtubule stabilization were responsible for the cell shape changes that precede cell fusion, microtubule stabilizing drugs might be expected to accelerate the process. We tested this by differentiating C2C12 cells in the absence and presence of the microtubule stabilizing drug Taxol. Cells were grown in standard growth media until they reached near-confluence, followed by replacement with media containing 2% horse serum (differentia- tion media). The differentiation media was supplemented with the dilution vehicle alone or 100 nM Taxol, a potent microtubule- stabilizing drug. In control undifferentiated myoblasts, single microtubules were organized in a radial array (Figure 1A). In control differentiated myotubes, microtubules were arranged in an array of dense, linear bundles consistent with massive stabilization, and they expressed the differentiation marker muscle myosin heavy chain (Figure 1B). The addition of Taxol during differentiation also created a dense microtubule array, but it prevented cell elongation and fusion and caused reduced myosin expression (Figure 1C). Thus, rather than promoting myoblast differentiation, hyperstabilization of microtubules with Taxol completely prevented it. Dramatic muscle phenotypes have not been reported in human PJS patients or in mouse models of germline LKB1 deletion. Together with the finding that LKB1 gene knockout in skeletal muscle did not produce an obvious phenotype in young animals [24], this data gave the impression that LKB1 did not play a major role in muscle development. Subsequent genetic data, however, has shown important roles for LKB1 in muscle. This includes the finding that both skeletal and cardiac muscle phenotypes developed in older LKB1 knockout mice, with decreased voluntary running, type II muscle fiber atrophy, and loss of hind limb muscle function [25]. LKB1 was also shown to affect the differentiation of mouse embryonic fibroblasts (MEFs) into myofibroblasts, contrac- tile cells that express smooth muscle actin and show acto-myosin contractility [26,27]. Finally, activation of the LKB1 downstream kinase AMPK was impaired in LKB1 skeletal muscle knockouts [24], and running ability was reduced due to diminished muscle function [28]. These data suggest that LKB1 has a role in muscle function and might contribute to muscle development and/or homeostasis. We next tested whether a shorter period of exposure to microtubule-altering drugs affected myoblast differentiation. We cultured C2C12 cells in differentiation media containing vehicle, 200 nM Taxol, or 200 nM Nocodozole. After two days of this incubation, culture was continued in differentiation media lacking drugs. Microtubule stabilization prevents myoblast differentiation We found that treatment with both Nocodazole and Taxol prevented cell elongation and fusion, consistent with an important role for microtubules in these processes (Figure S1). Within six hours after drug washout, cells treated with Taxol remained rounded, but cells treated with Nocodazole showed dramatic elongation, similar to controls. By 24 hours, cells treated with Nocodazole differentiated as well as controls, as assessed by morphology in phase contrast images (data not shown). This experiment showed that exposure to Nocodazole followed by drug washout was more conducive to differentiation than was exposure to Taxol followed by drug washout, and could potentially be used to synchronize cells prior to fusion. It also suggested the possibility that microtubule destabilization could contribute to myoblast differentiation. Mechanisms by which LKB1 could control muscle differenti- ation include promoting changes in cell polarity or microtubule stability [29,30,31,32,33,34,35]. LKB1 is proposed to be at or near the top of a network for polarity establishment in some systems including epithelial and neuronal cells [36]. LKB1 has been reported to reduce the stability of microtubules, because introduction of LKB1 into LKB1-null mouse embryonic fibro- blasts (MEFs) was able to suppress microtubule growth in an assay that measured the elongation of microtubules following washout of the microtubule destabilizing drug Nocodazole [37]. How or whether these roles of LKB1 in cell polarity and microtubule destabilization are linked is not completely clear. In this study, we asked whether microtubule destabilization plays a role in skeletal myoblast differentiation, and we tested the role of LKB1 in myoblast microtubule elongation and myoblast differentiation. We found that forced microtubule stabilization blocks myoblast differentiation, suggesting that stabilization alone is insufficient to drive the cytoskeletal changes associated with this process. We found that myoblast differentiation is associated with an initial reduction in microtubule stability that precedes the microtubule reorganization and pronounced stabilization seen in myotubes. We further found that LKB1 suppresses microtubule assembly in C2C12 myoblasts, making it a potential candidate to facilitate this reduction in microtubule stability and/or microtu- bule reorganization. LKB1 RNAi reduced differentiation in C2C12 cells, and LKB1 overexpression enhanced it, supporting a positive role for LKB1 in myoblast differentiation. LKB1 is thus a candidate to promote myoblast differentiation by reducing Results Liver kinase B1 (LKB1) is a serine-threonine kinase that was originally identified as the product of the tumor suppressor gene mutated in the familial Peutz-Jeghers cancer syndrome (PJS) [17]. Patients who inherit a germline mutation in a single allele of the STK11 gene that encodes LKB1 develop a syndrome of gastrointestinal polyps; malignant tumors of the gastrointestinal tract and other tissues; and skin pigmentation [18,19]. Somatic mutations of LKB1 have been observed in other tumor types (reviewed in [20,21,22]). Germline deletion of the gene encoding LKB1 is lethal during embryogenesis, and mouse models of heterozygous germline LKB1 mutation have been established in which the animals develop tumors of a similar distribution to human PJS [23]. Introduction cytoskeleton. Microtubule organization completely changes - from a radial array of individual microtubules that emanate from a single central microtubule organizing center (MTOC) in myoblasts - to a dense longitudinal linear array that originates from a diffuse, perinuclear microtubule organizing network and/or non-centro- somal, cytoplasmic sites in myotubes [4,5,6,7,8]. The mechanisms of this microtubule reorganization and stabilization remain incompletely understood, but it is clear that they play an important role in (and are not merely a byproduct of) differentiation, because both anti-microtubule drugs and loss of microtubule regulatory proteins greatly impair or prevent differentiation [9,10,11,12,13, 14,15]. Muscle fibers form in the developing embryo through the fusion of myoblasts into multinucleate myotubes. In adult tissues, muscle stem cells known as satellite cells line the surface of muscle fibers and provide a source of myoblasts for muscle homeostasis, hypertrophy, and repair of injury [1]. In response to differentiation signals, myoblasts withdraw from the cell cycle, re-organize their cytoskeleton, and ultimately fuse into multinucleate myotubes (reviewed in [2]). Upregulation of the transcription factors MEF2 and MyoD occurs early in the process, and this is followed by expression of myocyte specific proteins such as muscle myosin. This differentiation process has been modeled in vitro using myoblast cell lines, which differentiate upon switching from standard growth media containing fetal calf serum to differenti- ation media, which contains a lower percentage of adult horse serum, over the course of three to four days [3]. Myotubes contain a population of elongated, stabilized microtubules with reduced turnover. The microtubule binding proteins demonstrated to have positive roles in myoblast differentiation (MAP4, EB1, EB3) all act to stabilize microtubules and promote their elongation [10,13,14]. Thus, forced microtu- bule stabilization might be expected to promote differentiation. However, the converse is true: treatment of myoblasts with the One of the most dramatic changes observed in cultured myoblasts during differentiation occurs in the microtubule February 2012 | Volume 7 | Issue 2 | e31583 1 February 2012 | Volume 7 | Issue 2 | e31583 LKB1 Role in Myoblasts LKB1 Role in Myoblasts microtubule stabilizing drug Taxol is reported to block differen- tiation ([16] and our data presented here). Thus, simple microtubule stabilization is likely to be insufficient to produce this stable, reorganized microtubule array. microtubule stability early in the differentiation process, analogous to factors that reduce microtubule stability early in mitosis to facilitate formation of the mitotic spindle. PLoS ONE | www.plosone.org Differentiating myoblasts show transient microtubule destabilization To test the possibility that microtubule destabilization contrib- utes to differentiation, we assayed for changes in microtubule stability using immunofluorescence. The alpha-subunit of tubulin in stabilized microtubules undergoes reversible post-translational removal of its C-terminal tyrosine (detyrosination) to expose glutamate as the terminal residue [38]. Glu-tubulin specific antibodies can be used to recognize microtubules containing detyrosinated tubulin that serve as a marker of microtubule stabilization. We found that undifferentiated myoblasts showed a small proportion of glu-tubulin-containing microtubules, as has been previously reported for L6 myoblasts [8]. Within the first day of differentiation, the abundance of glu-tubulin became reduced, and this reduction was then followed by a dramatic increase in PLoS ONE | www.plosone.org February 2012 | Volume 7 | Issue 2 | e31583 February 2012 | Volume 7 | Issue 2 | e31583 2 LKB1 Role in Myoblasts Figure 1. Forced microtubule stabilization prevents differentiation. Differentiation and Taxol treatment both resulted in stable, longitudinally bundled microtubules, but Taxol-treated cells fail to elongate or fuse. C2C12 cells were allowed to proliferate in growth media or cultured in differentiation media for 3 days in the presence of vehicle alone or 100 nM Taxol. Cells were fixed and immunofluorescence for myosin heavy chain (red) and microtubules (green) performed, with imaging at 46(A) or 1006(B) magnification. Undifferentiated cells lacked myosin heavy chain expression (A) and microtubules were organized in a radial array (B). Differentiated cells treated with vehicle alone became elongated and multinucleate, expressed abundant myosin heavy chain (A), and microtubules were organized in a longitudinally bundled array (B). Cells treated with Taxol during differentiation expressed myosin heavy chain (A) and organized microtubules in longitudinal bundles (B), but they failed to elongate or become multinucleate. C. Taxol treatment stabilizes C2C12 cell microtubules. Cells were treated with vehicle alone or 100 nM Taxol, followed by microtubule depolymerization with 5 mM Nocodazole for 1 hour. Cells were fixed and immunofluorescence for tubulin (green) performed. Control cells showed a radial array of single microtubules, whereas cells treated with Taxol showed microtubules organized in longitudinal bundles. Control cells treated with Nocodazole showed complete microtubule depolymerization, whereas Taxol-treated cells treated with Nocodazole showed resistance to this depolymerization. Bars: A, 100 mm; B and C, 10 mm. doi:10.1371/journal.pone.0031583.g001 Figure 1. Forced microtubule stabilization prevents differentiation. Differentiation and Taxol treatment both resulted in stable, longitudinally bundled microtubules, but Taxol-treated cells fail to elongate or fuse. Differentiating myoblasts show transient microtubule destabilization C2C12 cells were allowed to proliferate in growth media or cultured in differentiation media for 3 days in the presence of vehicle alone or 100 nM Taxol. Cells were fixed and immunofluorescence for myosin heavy chain (red) and microtubules (green) performed, with imaging at 46(A) or 1006(B) magnification. Undifferentiated cells lacked myosin heavy chain expression (A) and microtubules were organized in a radial array (B). Differentiated cells treated with vehicle alone became elongated and multinucleate, expressed abundant myosin heavy chain (A), and microtubules were organized in a longitudinally bundled array (B). Cells treated with Taxol during differentiation expressed myosin heavy chain (A) and organized microtubules in longitudinal bundles (B), but they failed to elongate or become multinucleate. C. Taxol treatment stabilizes C2C12 cell microtubules. Cells were treated with vehicle alone or 100 nM Taxol, followed by microtubule depolymerization with 5 mM Nocodazole for 1 hour. Cells were fixed and immunofluorescence for tubulin (green) performed. Control cells showed a radial array of single microtubules, whereas cells treated with Taxol showed microtubules organized in longitudinal bundles. Control cells treated with Nocodazole showed complete microtubule depolymerization, whereas Taxol-treated cells treated with Nocodazole showed resistance to this depolymerization. Bars: A, 100 mm; B and C, 10 mm. doi:10.1371/journal.pone.0031583.g001 glu-tubulin as cells elongated and fused (Figure 2). This finding is consistent with a role for a transient reduction in microtubule stability prior to the subsequent reorganization of the microtubule array and ultimate microtubule stabilization seen in myotubes. controls, consistent with a previous report in non-muscle cells (data not shown) [37]. We then performed Nocodazole washout experiments to determine whether LKB1 could regulate microtu- bule re-growth, a more sensitive assay of microtubule stabilization. Microtubules in cells treated with the control or LKB1 virus were depolymerized with Nocodazole for one hour, followed by drug washout for a brief interval and rapid fixation in methanol. The size of the resulting microtubule asters was measured using tubulin immunofluorescence. This showed that asters in cells treated with a control virus had a mean diameter of 10.0 mm 7 minutes after Nocodazole washout, while cells treated with the LKB1 virus had a mean aster diameter of 4.6 mm, a 54 percent reduction (Figure 3). Thus, excess LKB1 reduced microtubule elongation. PLoS ONE | www.plosone.org LKB1 destabilizes microtubules in C2C12 myoblasts Several microtubule regulatory proteins are candidates to destabilize microtubules during the myoblast differentiation process. One of these is LKB1, which was reported to prevent microtubule elongation in embryonic fibroblasts following Noco- dazole washout [37]. To determine whether LKB1 regulates microtubules in myoblasts, we manipulated LKB1 levels and assayed microtubule elongation in C2C12 cells following Noco- dazole washout. We did the converse experiment of measuring microtubule re- growth in cells with reduced LKB1 levels, using RNA interference (RNAi). Cells transfected with an siRNA targeting LKB1 did not show any obvious differences in the microtubule array compared to cells transfected with a nonspecific siRNA (data not shown). However, following Nocodazole treatment and washout, micro- tubule elongation was greater in cells with LKB1 RNAi compared to controls. Cells treated with a control siRNA had a mean aster We increased LKB1 levels in C2C12 cells using adenoviral overexpression. Cells were infected with an adenovirus encoding LKB1 or a control virus encoding green fluorescent protein (GFP). We first imaged microtubules in asynchronously growing cells to determine whether LKB1 overexpression altered the microtubule array, and we found no appreciable difference in the appearance of microtubules in cells overexpressing LKB1 compared to February 2012 | Volume 7 | Issue 2 | e31583 3 LKB1 Role in Myoblasts Figure 2. Myoblasts show a transient reduction in stable microtubules prior to an ultimate increase in microtubule stabilization. Cells were differentiated by serum switch for the indicated times, fixed, and immunofluorescence for detyrosinated (glu-) tubulin, a marker of stabilized microtubules, and tyrosinated microtubules, a marker of more dynamic microtubules, was performed. Upper panel shows detyrosinated tubulin, which was reduced at the 24 hour time point and then progressively increased over the next two days. Short linear structures visible with this antibody at 24 hours are primary cilia. Bottom panel shows glu- and tyrosinated tubulin immunofluorescence merged with DNA staining. Bar, 10 mm. doi:10 1371/journal pone 0031583 g002 Figure 2. Myoblasts show a transient reduction in stable microtubules prior to an ultimate increase in microtubule stabilization. Cells were differentiated by serum switch for the indicated times, fixed, and immunofluorescence for detyrosinated (glu-) tubulin, a marker of stabilized microtubules, and tyrosinated microtubules, a marker of more dynamic microtubules, was performed. Upper panel shows detyrosinated tubulin, which was reduced at the 24 hour time point and then progressively increased over the next two days. LKB1 destabilizes microtubules in C2C12 myoblasts Short linear structures visible with this antibody at 24 hours are primary cilia. Bottom panel shows glu- and tyrosinated tubulin immunofluorescence merged with DNA staining. Bar, 10 mm. doi:10 1371/journal pone 0031583 g002 diameter of 4.8 mm 2 minutes after Nocodazole washout, whereas cells treated with LKB1 RNAi had a mean aster size of 8.0 mm, a 67 percent increase. This result of greater microtubule elongation in cells with reduced LKB1 is also consistent with a role for LKB1 in suppressing microtubule elongation in myoblasts. LKB1 translocates to the cytoplasm and phosphorylates downstream kinases during myoblast differentiation We next investigated the regulation of LKB1 in myoblast differentiation. We first tested whether LKB1 levels changed during differentiation, by Western blotting for LKB1 at serial time points of a differentiation time course. We confirmed differenti- ation using phase contrast imaging, as well as Western blotting and immunofluorescence for muscle myosin heavy chain. Western blotting for LKB1 showed that LKB1 levels increased by 56% within the first day of differentiation and remained elevated throughout the differentiation time course (Figure 4A). This early increase in a factor that reduces microtubule elongation further supports a role for reduced microtubule stability prior to eventual microtubule stabilization that occurs in the differentiation process. Figure 3. Overexpression of LKB1 suppresses microtubule assembly, and LKB1 RNAi increases it. (A) C2C12 cells were infected with a control adenovirus (control AV) or an adenovirus that drives expression of wild type human LKB1 (LKB1 AV) for 24 hours. Cells were treated with Nocodazole for 1 hour followed by a 7 minute washout, fixation, and microtubule immunofluorescence. Representa- tive microtubule asters are shown. (B) Quantification of aster diameter for A, expressed as mean diameter+/2s.e.m. (C) C2C12 were cells transfected with a control siRNA or an siRNA that targets expression of LKB1 and treated with Nocodazole for 1 hour followed by a 2 minute washout, fixation, and microtubule immunofluorescence. Representa- tive asters are shown. (D) Quantification of aster diameter for C. At least two experiments were done for each condition. See Fig. 4 for LKB1 levels. doi:10 1371/journal pone 0031583 g003 Mechanisms of LKB1 activation are not completely understood; however, activation is known to be associated with translocation from the nucleus to the cytoplasm, where LKB1 can phosphorylate target proteins [39,40]. Thus, we also assayed LKB1 localization during the differentiation process. LKB1 destabilizes microtubules in C2C12 myoblasts LKB1 levels increase by day 1 and peak at day 2 of differentiation. Levels of the phosphorylated forms of LKB1 substrates AMPK and MARK increase by day 1. Tubulin is shown as a loading control. (B, C) Cells were transfected with GFP-LKB1 as described in text. Representative images from undifferentiated cells (B) and cells cultured in differentiation media for three days (C) are shown. The mean ratio of nuclear to cytoplasmic fluorescence was 3.0 in undifferentiated cells and 1.2 in differentiated cells. Bars, 50 mm. doi:10.1371/journal.pone.0031583.g004 Figure 4. LKB1 levels and substrate activation increases, and LKB1 redistributes to the cytoplasm during differentiation. (A) Western blotting was done on samples from the indicated days of differentiation. Myosin heavy chain (myosin) expression increases progressively. LKB1 levels increase by day 1 and peak at day 2 of differentiation. Levels of the phosphorylated forms of LKB1 substrates AMPK and MARK increase by day 1. Tubulin is shown as a loading control. (B, C) Cells were transfected with GFP-LKB1 as described in text. Representative images from undifferentiated cells (B) and cells cultured in differentiation media for three days (C) are shown. The mean ratio of nuclear to cytoplasmic fluorescence was 3.0 in undifferentiated cells and 1.2 in differentiated cells. Bars, 50 mm. doi:10.1371/journal.pone.0031583.g004 Interestingly, the amount of tubulin in cells overexpressing LKB1 was reduced to 53% of control virus-infected cells on Day 1 of differentiation. Thus, LKB1 positively controls differentiation, with supraphysiologic LKB1 levels enhancing the degree of differentiation over cells with endogenous LKB1 levels. compartment and an increase in cytoplasmic LKB1 activity during differentiation. LKB1 phosphorylates several substrates of the AMP-activated protein kinase (AMPK) family, including AMPK and microtubule affinity regulating kinases (MARKs), among others [21,33]. To test whether the increase in LKB1 levels and cytoplasmic translocation was associated with biologically relevant evidence of LKB1 activation, we assayed for phosphorylation of these substrates during differentiation using Western blotting with phospho-specific antibodies. This revealed a dramatic increase in the phosphoryla- tion of both AMPK (at threonine 172, a known site of activating phosphorylation) and MARK kinases, by day one of differentiation (Figure 4A). On day 1 of differentiation, AMPK phosphorylation increased to 2.3 times and MARK phosphorylation increased to 1.3 times their levels at day 0. Thus, these LKB1 substrates become activated early in differentiation, in parallel with increases in LKB1 abundance and cytoplasmic translocation. LKB1 destabilizes microtubules in C2C12 myoblasts We were unable to assess LKB1 localization by indirect immunofluorescence using commercially available anti-LKB1 antibodies, so we transfected C2C12 cells with a plasmid encoding GFP-LKB1 [41]. Imaging of GFP fluorescence showed that undifferentiated myoblasts had abundant GFP-LKB1 in the nucleus, consistent with reduced LKB1 kinase activity in the cytoplasm (Fig. 4B). To image GFP fluorescence in multinucleate myotubes, we took advantage of our own observation that cells treated with Nocodazole in differentiation media could be differentiated rapidly by washing out the Nocodazole. This allowed us to circumvent the brief window of GFP-LKB1 expression and the difficulty of transfecting multinucleate myotubes. We treated cells with Nocodazole in differentiation media for two days, transfected them with the plasmid encoding GFP-LKB1, washed out the Nocodazole to allow cell fusion, and imaged GFP-LKB1 the next day. In contrast to undifferentiated myoblasts, multinucleate myotubes expressing GFP-LKB1 showed a greater proportion of GFP fluorescence in the cytoplasm, such that nuclear and cytoplasmic abundance of GFP-LKB1 were equivalent (Fig. 4C). We quantified this by measuring the ratio of nuclear to cytoplasmic GFP fluorescence. In undifferentiated cells, this ratio was 3.0+/ 21.5 (n = 24), as opposed to 1.2+/20.3 (n = 19) in differentiated cells. This is consistent with a shift of LKB1 to the cytoplasmic Figure 3. Overexpression of LKB1 suppresses microtubule assembly, and LKB1 RNAi increases it. (A) C2C12 cells were infected with a control adenovirus (control AV) or an adenovirus that drives expression of wild type human LKB1 (LKB1 AV) for 24 hours. Cells were treated with Nocodazole for 1 hour followed by a 7 minute washout, fixation, and microtubule immunofluorescence. Representa- tive microtubule asters are shown. (B) Quantification of aster diameter for A, expressed as mean diameter+/2s.e.m. (C) C2C12 were cells transfected with a control siRNA or an siRNA that targets expression of LKB1 and treated with Nocodazole for 1 hour followed by a 2 minute washout, fixation, and microtubule immunofluorescence. Representa- tive asters are shown. (D) Quantification of aster diameter for C. At least two experiments were done for each condition. See Fig. 4 for LKB1 levels. doi:10.1371/journal.pone.0031583.g003 February 2012 | Volume 7 | Issue 2 | e31583 4 LKB1 Role in Myoblasts Figure 4. LKB1 levels and substrate activation increases, and LKB1 redistributes to the cytoplasm during differentiation. (A) Western blotting was done on samples from the indicated days of differentiation. Myosin heavy chain (myosin) expression increases progressively. LKB1 enhances myoblast differentiation We next tested whether LKB1 activation plays a positive role in myoblast differentiation. We used LKB1 overexpression and RNAi as described above, followed by differentiation using the serum switch assay. For overexpression, C2C12 cells were infected with the control or LKB1 adenovirus and grown in differentiation media, and differentiation was assayed by phase contrast microscopy and Western blotting for myosin expression. This showed that LKB1 overexpression (16 fold over endogenous levels) caused an increase in differentiation as compared to control virus treatment, with an average of 1.8 fold increased myosin heavy chain expression in cells overexpressing LKB1 as compared to controls (Figure 5). Phosphorylation of AMPK at threonine 172 was increased in cells overexpressing LKB1 at 1.5 times control. LKB1 destabilizes microtubules in C2C12 myoblasts Taken together, these findings support the conclusion that myoblast differentiation is associated with LKB1 activation, and associated activation of downstream kinases AMPK and MARKs. g We next tested whether reduced LKB1 levels impair differen- tiation. We used an siRNA that reduced LKB1 levels to 86% of control on day 1 (Figure 6). During differentiation, LKB1 levels in both control and LKB1 siRNA cells rose over the 4 days of the assay, so that by day 4 of differentiation, LKB1 level in the RNAi sample was 39% of control; this increase probably represented a combination of increased expression due to differentiation and diminution of the siRNA effect. Phase contrast microscopy, immunofluorescence for myosin, and Western blotting for myosin were used to assay morphological and biochemical features of differentiation, and these showed that cells with reduced LKB1 had reduced differentiation (Fig. 6). By Western blotting, the myosin heavy chain level in the LKB1 RNAi sample was 59 and 64 percent of control on days 3 and 4, respectively. LKB1 RNAi caused a reduction in the activation of AMPK, as detected by blotting with phospho-threonine 172 antibodies (43 percent of control at day 4). Unlike controls, cells with LKB1 RNAi showed increased tubulin levels, such that lysates on day 4 of LKB1 RNAi had 1.6 times as much tubulin as on day 1. These assays showed that LKB1 RNAi reduced myoblast differentiation and further support a positive role for LKB1 in the differentiation process that correlates with its ability to phosphorylate substrates. PLoS ONE | www.plosone.org Implications for human muscle diseases Muscle differentiation is not just important during embryogen- esis. Muscle undergoes continuous regeneration, through the differentiation of satellite cells to myoblasts, and subsequent myoblast differentiation into myotubes and muscle fibers [48]. When muscles are injured, satellite cells are mobilized for repair by activating new fiber formation. Thus, insights into muscle differentiation might prove useful for enhancing muscle homeo- stasis and repair in adults. Development of small molecules to Mechanism of LKB1 effects on myotube formation Samples from the indicated days were probed for LKB1, myosin heavy chain (myosin), and phosphorylated AMPK; tubulin, actin, and GAPDH were probed as loading controls. doi:10.1371/journal.pone.0031583.g005 differentiation with cell fusion. These findings support the conclusion that simple microtubule stabilization, which is seen in fully differentiated myotubes, is alone insufficient to positively impact myoblast differentiation. Based on our findings that (1) microtubule depolymerization followed by re-growth can lead to rapid differentiation, (2) microtubule detyrosination, a marker of stabilization, transiently decreases before it increases, and (3) LKB1, which reduces microtubule elongation, promotes C2C12 differentiation; we favor a model in which early microtubule destabilization might be an important step in a differentiation process that ultimately culminates in marked microtubule stabilization (Figure 7). This might be similar to the initial destabilization of microtubules that is essential to their reorgani- zation and subsequent stabilization during formation of mitotic and meiotic spindles [42,43]. Similar to mitosis, it is likely that an array of microtubule regulatory proteins contribute to the reduction and subsequent increase in microtubule stability that occur during myoblast differentiation [44]. Live cell imaging experiments with finer temporal resolution will allow us to test the timing and mechanism of a transient reduction in microtubule stability that we believe precedes eventual microtubule reorgani- zation and stabilization seen in myotubes. Successful myoblast polarization has been proposed to be a prerequisite for fusion competence [14]. LKB1 has roles in both cell polarization and microtubule destabilization, and the degree to which these roles are separable is not completely clear. Thus, LKB1 could be required for myoblast fusion through its effects on microtubules, cell polarization, or both, and its regulation of the two could bifurcate at many regulation points, or could be coupled. While our study does not address this level of mechanistic detail, it does suggest a useful model system in which these questions could be tested. LKB1 Role in Myoblasts Figure 5. LKB1 overexpression accelerates differentiation. (A) Phase contrast pictures of C2C12 cells uninfected (no virus), infected with an adenovirus overexpressing CRE recombinase and GFP (control AV), or infected with an adenovirus expressing human LKB1, and grown in differentiation media for the indicated number of days. Cells with LKB1 overexpression showed enhanced differentiation. (B) Western blotting shows increased myosin upon LKB1 overexpression. Samples from the indicated days were probed for LKB1, myosin heavy chain (myosin), and phosphorylated AMPK; tubulin, actin, and GAPDH were probed as loading controls. doi:10.1371/journal.pone.0031583.g005 differentiation, because LKB1 RNAi reduces differentiation, and LKB1 overexpression enhanced it. While several microtubule stabilizing factors have been shown to contribute to myoblast differentiation, we believe LKB1 is the first destabilizing factor demonstrated to contribute to the differentiation process [10,13,14]. This finding that a microtubule destabilizing factor promotes myoblast differentiation is not at odds with studies that show critical roles for microtubule stabilizing proteins in differentiation. Rather, we believe that LKB1-induced microtu- bule destabilization could precede microtubule stabilization effected by EB1, EB3, and MAP4, and that a combination of stabilizing and destabilizing factors is likely to be needed to fine- tune the changes in microtubule organization and membrane events in differentiating myoblast elongation and fusion. Mechanism of LKB1 effects on myotube formation Based on the known downstream functions of LKB1 and the known changes required for myotube formation, there are several mechanisms by which LKB1 could facilitate the differentiation process. Our study establishes microtubule desta- bilization and reduced cell fusion by LKB1, although it does not rule out other contributions of LKB1 to the process. LKB1 is likely to destabilize microtubules indirectly, as it does not bind to myoblast microtubules in vitro (data not shown). Its role is likely to be associated with LKB1 kinase activity, because LKB1 substrate phosphorylation happens early (by the first day) of differentiation. There are several LKB1 substrates that could mediate its role in differentiation, and our work does not determine which substrate(s) are involved. Potential mediators include several members of the AMPK family, including AMPK itself and MARKs. Several AMPK substrates are known to regulate microtubule polymeriza- tion dynamics, including the microtubule+tip protein CLIP-170 [45] and the microtubule stabilizing protein Tau [46,47]. However, in contrast to our model, in which the ultimate effect of LKB1 activation was to destabilize microtubules, AMPK was shown to increase the rate of microtubule polymerization, an effect that would be expected to stabilize microtubules, in Vero cells [45]. Additional LKB1 substrates must also be tested. LKB1 could also reduce microtubule stability by suppressing tubulin expres- sion, as lysates from cells with excess LKB1 contained less tubulin than control lysates, and lysates from cells with LKB1 RNAi showed progressive increases in tubulin levels. Further analysis of this possibility is also needed. Figure 5. LKB1 overexpression accelerates differentiation. (A) Phase contrast pictures of C2C12 cells uninfected (no virus), infected with an adenovirus overexpressing CRE recombinase and GFP (control AV), or infected with an adenovirus expressing human LKB1, and grown in differentiation media for the indicated number of days. Cells with LKB1 overexpression showed enhanced differentiation. (B) Western blotting shows increased myosin upon LKB1 overexpression. Samples from the indicated days were probed for LKB1, myosin heavy chain (myosin), and phosphorylated AMPK; tubulin, actin, and GAPDH were probed as loading controls. doi:10.1371/journal.pone.0031583.g005 Figure 5. LKB1 overexpression accelerates differentiation. (A) Phase contrast pictures of C2C12 cells uninfected (no virus), infected with an adenovirus overexpressing CRE recombinase and GFP (control AV), or infected with an adenovirus expressing human LKB1, and grown in differentiation media for the indicated number of days. Cells with LKB1 overexpression showed enhanced differentiation. (B) Western blotting shows increased myosin upon LKB1 overexpression. A model for microtubule changes during myoblast differentiation Our results show that microtubule stabilization with Taxol prevents myoblast differentiation, whereas microtubule destabili- zation with Nocodazole followed by drug washout promotes rapid PLoS ONE | www.plosone.org February 2012 | Volume 7 | Issue 2 | e31583 5 LKB1 Role in Myoblasts Materials and Methods LKB1 has been shown to play a role in the differentiation of neurites [30]. Now with our study showing a role in the differentiation of myoblasts, it would be interesting to see whether LKB1 could promote differentiation of other cell types as well. In a mouse model of the PJS cancer syndrome, LKB1 deletion in myofibroblasts appears to be sufficient to cause a polyposis LKB1 positively affects myoblast differentiation Our experiments show that LKB1, which destabilizes microtu- bule elongation from centrosomes, is a positive mediator of PLoS ONE | www.plosone.org February 2012 | Volume 7 | Issue 2 | e31583 6 LKB1 Role in Myoblasts Figure 6. LKB1 RNAi reduces differentiation. (A) Phase contrast pictures of C2C12 cells transfected an siRNA directed against mouse LKB1 (LKB1 RNAi) and controls were and grown in differentiation media for the indicated number of days. (B) Immunofluorescence for myosin and DNA staining done at day 3 of differentiation show reduced myosin expression in cells with LKB1 RNAi as compared to controls. (C) Western blotting shows reduced myosin expression upon LKB1 RNAi, as well as reduced phosphorylated AMPK (phosho-AMPK) and phosphorylated MARK (phospho-MARK). Tubulin and GAPDH were probed as loading controls. doi:10.1371/journal.pone.0031583.g006 Figure 6. LKB1 RNAi reduces differentiation. (A) Phase contrast pictures of C2C12 cells transfected an siRNA directed against mouse LKB1 (LKB1 RNAi) and controls were and grown in differentiation media for the indicated number of days. (B) Immunofluorescence for myosin and DNA staining done at day 3 of differentiation show reduced myosin expression in cells with LKB1 RNAi as compared to controls. (C) Western blotting shows reduced myosin expression upon LKB1 RNAi, as well as reduced phosphorylated AMPK (phosho-AMPK) and phosphorylated MARK (phospho-MARK). Tubulin and GAPDH were probed as loading controls. doi:10.1371/journal.pone.0031583.g006 syndrome [49]. This raises the possibility that introduction of myofibroblasts with wild-type LKB1 expression might play a role in preventing tumorigenesis in these patients. manipulate LKB1 activity would be helpful for further investigat- ing and altering the temporal control of differentiation. Another implication of our study is that transient use of microtubule destabilizing drugs might be useful for synchronizing muscle differentiation in vitro or in vivo. Reagents and antibodies Taxol and Nocodazole were purchased from Sigma Aldrich (St. Louis, MO, USA) and resuspended as 10 mM stock solutions in DMSO. All other chemicals were from Sigma unless otherwise noted. Figure 7. Model. Myoblasts contain a radial microtubule array that is a mixture of dynamic microtubules (identified in vivo by the presence of a C- terminal tyrosine on alpha-tubulin; depicted here as thin green lines) and stabilized microtubules (identified by post-translational detyrosination; depicted here as thick green lines). Fully differentiated myotubes show a linear microtubule array consisting of abundant detyrosinated/stable microtubules. Our data shows that simple microtubule stabilization blocks the formation of myotubes, and a transient decrease in microtubule stabilization precedes cell elongation and fusion into myotubes. We propose a model in which transient microtubule destabilization facilitates microtubule reorganization, and this is then followed by microtubule stabilization. We suggest that LKB1 plays a role in this microtubule destabilization and/or reorganization, which accounts for its role in the differentiation process. doi:10.1371/journal.pone.0031583.g007 Figure 7. Model. Myoblasts contain a radial microtubule array that is a mixture of dynamic microtubules (identified in vivo by the presence of a C- terminal tyrosine on alpha-tubulin; depicted here as thin green lines) and stabilized microtubules (identified by post-translational detyrosination; depicted here as thick green lines). Fully differentiated myotubes show a linear microtubule array consisting of abundant detyrosinated/stable microtubules. Our data shows that simple microtubule stabilization blocks the formation of myotubes, and a transient decrease in microtubule stabilization precedes cell elongation and fusion into myotubes. We propose a model in which transient microtubule destabilization facilitates microtubule reorganization, and this is then followed by microtubule stabilization. We suggest that LKB1 plays a role in this microtubule destabilization and/or reorganization, which accounts for its role in the differentiation process. doi:10.1371/journal.pone.0031583.g007 Figure 7. Model. Myoblasts contain a radial microtubule array that is a mixture of dynamic microtubules (identified in vivo by the presence of a C- terminal tyrosine on alpha-tubulin; depicted here as thin green lines) and stabilized microtubules (identified by post-translational detyrosination; depicted here as thick green lines). Fully differentiated myotubes show a linear microtubule array consisting of abundant detyrosinated/stable microtubules. Our data shows that simple microtubule stabilization blocks the formation of myotubes, and a transient decrease in microtubule stabilization precedes cell elongation and fusion into myotubes. We propose a model in which transient microtubule destabilization facilitates microtubule reorganization, and this is then followed by microtubule stabilization. Reagents and antibodies We suggest that LKB1 plays a role in this microtubule destabilization and/or reorganization, which accounts for its role in the differentiation process. doi:10.1371/journal.pone.0031583.g007 February 2012 | Volume 7 | Issue 2 | e31583 PLoS ONE | www.plosone.org 7 LKB1 Role in Myoblasts MD, USA) according to the manufacturer’s protocol, in Solution V with program T-017. Approximately 26106 cells were transfected per reaction with 7–8 mg of siRNA. Controls were treated identically with a control siRNA (Sigma) or omission of the siRNA. MD, USA) according to the manufacturer’s protocol, in Solution V with program T-017. Approximately 26106 cells were transfected per reaction with 7–8 mg of siRNA. Controls were treated identically with a control siRNA (Sigma) or omission of the siRNA. Antibodies for Western blotting included anti-LKB1 (clone D60C5, Cell Signaling Technology, Danvers, MA, USA) anti- Myosin heavy chain (Developmental Studies Hybridoma Bank; under the auspices of the NICHD and maintained by The University of Iowa, Department of Biology; Iowa City, Iowa, USA), anti-AMPK-alpha (Santa Cruz Biotechnology, Santa Cruz, CA, USA), anti-phospho-AMPK (Clone 40H9, which recognizes phospho-threonine 172, Cell Signaling), anti-MARK (Abcam, Cambridge, MA, USA), anti-phospho-MARK activation loop (Cell Signaling), anti-tubulin (clone DM1A, Sigma), anti-beta-actin (Sigma), and anti-GAPDH (Santa Cruz). MD, USA) according to the manufacturer’s protocol, in Solution V with program T-017. Approximately 26106 cells were transfected per reaction with 7–8 mg of siRNA. Controls were treated identically with a control siRNA (Sigma) or omission of the siRNA. Antibodies for Western blotting included anti-LKB1 (clone D60C5, Cell Signaling Technology, Danvers, MA, USA) anti- Myosin heavy chain (Developmental Studies Hybridoma Bank; under the auspices of the NICHD and maintained by The University of Iowa, Department of Biology; Iowa City, Iowa, USA), anti-AMPK-alpha (Santa Cruz Biotechnology, Santa Cruz, CA, USA), anti-phospho-AMPK (Clone 40H9, which recognizes phospho-threonine 172, Cell Signaling), anti-MARK (Abcam, Cambridge, MA, USA), anti-phospho-MARK activation loop (Cell Signaling), anti-tubulin (clone DM1A, Sigma), anti-beta-actin (Sigma), and anti-GAPDH (Santa Cruz). MD, USA) according to the manufacturer’s protocol, in Solution V with program T-017. Approximately 26106 cells were transfected per reaction with 7–8 mg of siRNA. Controls were treated identically with a control siRNA (Sigma) or omission of the siRNA. GFP-LKB1 encoded in a plasmid was purchased from Addgene (Cambridge, MA, USA). Transfection of undifferentiated cells was done by nucleofection as above with 3 mg of DNA. Nocodazole washout and microtubule elongation assay Cells grown on glass coverslips were incubated in growth media with 10 mM Nocodazole for 1 hour, washed with pre-warmed PBS and pre-warmed media, and incubated in pre-warmed media without Nocodazole for the indicated times (from first PBS wash to ice-methanol fixation). They were fixed by immersion in ice-cold methanol and processed for immunofluorescence as described below. The washout time was counted from the first PBS wash to fixation. Controls from different experiments are not comparable because of pre-warming of PBS and media in some experiments. Microtubules formed upon washout of Nocodazole were imaged by tubulin immunofluorescence. Approximately 50 randomly chosen 206 fields were imaged, for a total of ,350–400 cells per condition for LKB1 overexpression and ,125 cells per condition for LKB1 RNAi. Asters formed from the elongation of microtubules outward in all directions from the cell’s centrosome. The diameter of each aster was measured by drawing a line across the aster at its maximum diameter in a single focal plane using the region measurements tool in MetaMorph software. Because the asters were small and the cells flat, a single focal plane contained the entire length of the microtubules. Values are expressed as mean+/2standard error of the mean. GFP-LKB1 expression in nucleus versus cytoplasm was calculated by measuring the average pixel intensity in a background-subtracted 20620 pixel square placed over the nucleus or cytoplasm and taking a ratio for each individual cell, using the region measurements tool in MetaMorph software. GFP-LKB1 expression in nucleus versus cytoplasm was calculated by measuring the average pixel intensity in a background-subtracted 20620 pixel square placed over the nucleus or cytoplasm and taking a ratio for each individual cell, using the region measurements tool in MetaMorph software. Adenoviral LKB1 overexpression Adenoviral LKB1 overexpression LKB1 overexpression was done by adenoviral infection according to an institutional biosafety committee-approved protocol with a virus encoding human LKB1 (Ad-STK11, Vector Biolabs, Philadelphia, PA, USA). Control cells were infected with a control virus (CRE-GFP, Vector Biolabs). Cells were infected at a multiplicity of infection (MOI) of ,5 viral particles per cell in differentiation media at the start of the experiment. Differentiation media was changed as needed without re-addition of virus. Immunofluorescence, microscopy, and analysis Differentiation was induced when cells reached near-confluence using a standard media switch assay. Cells were washed three times with PBS and grown in DMEM with 2% horse serum (Invitrogen) instead of FCS. This induced differentiation within 3– 4 days, depending on confluence at the time of the switch and the passage number. These were both matched between controls and other manipulations in all experiments. For immunofluorescence experiments, cells were plated on glass coverslips and allowed to adhere in growth media before differentiation was induced. For phase contrast pictures, cells were imaged in tissue culture plates using an inverted microscope (Nikon Instruments, Melville, NY, USA) at 46magnification. Random regions of the well were imaged to avoid bias. For immunofluorescence, cells were grown on glass coverslips and fixed in ice-cold methanol for 5 minutes or in freshly made 4% formaldehyde at room temperature for 20 minutes. Cells were permeabilized in Tris-buffered saline (TBS) with 0.1% Triton X100 and blocked in 2% bovine serum albumin (BSA, Fisher Scientific) in TBS/0.1% Triton X100 for 1 hour at room temperature. Primary and secondary antibodies were diluted in block solution and incubated for 1 hour at room temperature. DNA was stained with Hoechst 33342 (Sigma) at 10 mg/ml for 2 minutes. Coverslips were mounted in media containing 0.5% 0- phenylenediamine in 20 mM Tris pH 8.8 and 90% glycerol and sealed with nail polish. Images were acquired at 46, 606, or 1006 magnification with a Yokogawa CSU-10 spinning disk confocal head (Perkin Elmer, Wellesley, MA) onto an ORCA AG CCD camera (Hamamatsu Photonics, Bridgewater, NJ). Image acqui- sition, processing, and analysis were done using MetaMorph software (Molecular Devices Corp, Sunnyvale, CA). All low-power fields were selected randomly to avoid bias. Cell culture The mouse myoblast cell line C2C12 was purchased from ATCC (Manassas, VA, USA) and grown in DMEM with 10% fetal calf serum (FCS, not heat inactivated; Atlanta Biologicals, Lawrenceville, GA, USA). Cells were not allowed to exceed 70% confluence during passaging and were discarded after 20 passages (40 days), to minimize depletion of myoblasts from the culture. PLoS ONE | www.plosone.org Reagents and antibodies For differentiated cells, cells were grown in differentiation media in the presence of 200 nM Nocodazole to prevent cell fusion, transfected with 3 mg of DNA, and plated in differentiation media without Nocodazole for one day prior to imaging, at which point cells had fused as well as controls that were differentiated for the same time period in the absence of Nocodazole. Antibodies for immunofluorescence included FITC-conjugated anti-tubulin (DM1A, Sigma) and anti-myosin heavy chain (Developmental Studies Hybridoma bank), anti-tyrosinated tubu- lin (clone YL1/2, Millipore, Temecula, CA), and anti-detyrosi- nated (glu) tubulin (Millipore). Species-specific secondary antibod- ies conjugated to Alexa-488 and -568 fluors were used (Invitrogen, Carlsbad, CA, USA). Antibodies for immunofluorescence included FITC-conjugated anti-tubulin (DM1A, Sigma) and anti-myosin heavy chain (Developmental Studies Hybridoma bank), anti-tyrosinated tubu- lin (clone YL1/2, Millipore, Temecula, CA), and anti-detyrosi- nated (glu) tubulin (Millipore). Species-specific secondary antibod- ies conjugated to Alexa-488 and -568 fluors were used (Invitrogen, Carlsbad, CA, USA). Western blotting Cells were washed in PBS and either scraped into lysis buffer (150 mM NaCl, 50 mM Hepes pH 7.4, 2 mM EGTA, 2 mM MgCl2, 0.1% Triton X100, with protease inhibitors PMSF, NaF, NaVO4, pepstatin, chymostatin, and leupeptin) or trypsinized, pelleted, and stored at 280uC, followed by lysis in this buffer for 30 min on ice. (Of note, trypsinization activated phosphorylation of AMPK on threonine 172, the same epitope phosphorylated by LKB1, presumably through calcium-calmodulin dependent pro- tein kinase kinase (CAMKK). Overexpression of LKB1 and Transfections for LKB1 RNAi and GFP-LKB1 expression LKB1 RNAi was done with an siRNA oligo that targets the mouse LKB1 coding sequence with the sequence 59-GGGUA- CUUCCGCCAGCUGAtt-39 (Sigma). Cells were electroporated with the siRNA using a nucleofector (Lonza USA, Walkersville, PLoS ONE | www.plosone.org February 2012 | Volume 7 | Issue 2 | e31583 8 LKB1 Role in Myoblasts LKB1 Role in Myoblasts LKB1 Role in Myoblasts Nocodazole cause cell rounding and prevent myoblast fusion, but washout of Nocodazole is associated with more substantial cell elongation than washout of Taxol. (B) Corresponding immuno- fluorescence images were done on cells fixed 6 hours following drug washout. Insets show higher magnification images of multinucleate cells in controls and Nocodazole treated cultures, and cells with single nuclei in Taxol treated cells. This shows that cells treated with both drugs express myosin heavy chain (MHC, red), but only cells treated with Nocodazole show substantial cell fusion, even at 6 hours following washout. Bar, 50 mm. (C) Fusion index from the same time point as shown in B. Ten random 206 fields were imaged for myosin heavy chain and DNA, and number of cells with one nucleus or more than one nucleus was counted. This showed that 60 percent of control cells expressing myosin heavy chain had fused, while only 24 percent of Taxol treated and 40 percent of Nocodazole treated cells had fused. (TIF) growth in differentiation media further increased this phosphor- ylation over and above that seen with trypsinization). Lysates were cleared by centrifugation at 14,000 G, and protein was assayed with Bradford reagent (Biorad, Hercules, CA, USA). Adenovirus- infected cells were lysed by washing with PBS and scraping directly into sample buffer, followed by bath sonication to shear DNA and loading of equal lysate volume. References 1. Zammit PS (2008) All muscle satellite cells are equal, but are some more equal than others? Journal of Cell Science 121: 2975–2982. 17. Hemminki A, Markie D, Tomlinson I, Avizienyte E, Roth S, et al. (1998) A serine/threonine kinase gene defective in Peutz-Jeghers syndrome. Nature 391: 184–187. 1. Zammit PS (2008) All muscle satellite cells are equal, but are some more equal than others? Journal of Cell Science 121: 2975–2982. 2. Mohun T (1992) Muscle differentiation. Current Opinion in Cell Biology 4: 923–928. 2. Mohun T (1992) Muscle differentiation. Current Opinion in Cell Biology 4: 923–928. 18. van Lier MG, Wagner A, Mathus-Vliegen EM, Kuipers EJ, Steyerberg EW, et al. (2010) High cancer risk in Peutz-Jeghers syndrome: a systematic review and surveillance recommendations. American Journal of Gastroenterology 105: 1258–1264. 3. Bains W, Ponte P, Blau H, Kedes L (1984) Cardiac actin is the major actin gene product in skeletal muscle cell differentiation in vitro. Molecular and Cellular Biology 4: 1449–1453. 19. Gammon A, Jasperson K, Kohlmann W, Burt RW (2009) Hamartomatous polyposis syndromes. Best Practice Res Clinical Gastroenterol 23: 219–231. gy 4. Warren RH (1974) Microtubular organization in elongating myogenic cells. Journal of Cell Science 63: 550–566. 5. Tassin AM, Maro B, Bornens M (1985) Fate of microtubule-organizing centers during myogenesis in vitro. Journal of Cell Biology 100: 35–46. 20. Launonen V (2005) Mutations in the human LKB1/STK11 gene. Human Mutation 26: 291–297. 6. Bugnard E, Zaal KJ, Ralston E (2005) Reorganization of microtubule nucleation during muscle differentiation. Cell Motility and the Cytoskeleton 60: 1–13. 21. Katajisto P, Vallenius T, Vaahtomeri K, Ekman N, Udd L, et al. (2007) The LKB1 tumor suppressor kinase in human disease. Biochimica et Biophysica Acta 1775: 63–75. 7. Musa H, Orton C, Morrison EE, Peckham M (2003) Microtubule assembly in cultured myoblasts and myotubes following nocodazole induced microtubule depolymerisation. Journal of Muscle Research and Cell Motility 24: 301–308. 22. Hezel AF, Bardeesy N (2008) LKB1; linking cell structure and tumor suppression. Oncogene 27: 6908–6919. 8. Gundersen GG, Khawaja S, Bulinski JC (1989) Generation of a stable, posttranslationally modified microtubule array is an early event in myogenic differentiation. Journal of Cell Biology 109: 2275–2288. 23. Wei C, Amos CI, Stephens LC, Campos I, Deng JM, et al. (2005) Mutation of Lkb1 and p53 genes exert a cooperative effect on tumorigenesis. Cancer Research 65: 11297–11303. 24. References Sakamoto K, McCarthy A, Smith D, Green KA, Hardie GD, et al. (2005) Deficiency of LKB1 in skeletal muscle prevents AMPK activation and glucose uptake during contraction. EMBO Journal 24: 1810–1820. 9. Warren RH (1968) The effect of colchicine on myogenesis in vivo in Rana pipiens and Rhodnius prolixus (Hemiptera). Journal of Cell Biology 39: 544–555. 10. Mangan ME, Olmsted JB (1996) A muscle-specific variant of microtubule- associated protein 4 (MAP4) is required in myogenesis. Development 122: 771–781. 25. Thomson DM, Hancock CR, Evanson BG, Kenney SG, Malan BB, et al. (2010) Skeletal muscle dysfunction in muscle-specific LKB1 knockout mice. J Appl Physiol 108: 1775–1785. 11. Spencer JA, Eliazer S, Ilaria RLJ, Richardson JA, Olson EN (2000) Regulation of microtubule dynamics and myogenic differentiation by MURF, a striated muscle RING-finger protein. Journal of Cell Biology 150: 771–784. 26. Hinz B (2010) The myofibroblast: paradigm for a mechanically active cell. Journal of Biomechanics 43: 146–155. 27. Vaahtomeri K, Ventela¨ E, Laajanen K, Katajisto P, Wipff PJ, et al. (2008) Lkb1 is required for TGFbeta-mediated myofibroblast differentiation. Journal of Cell Science 121: 3531–3540. 12. Chang W, Webster DR, Salam AA, Gruber D, Prasad A, et al. (2002) Alteration of the C-terminal amino acid of tubulin specifically inhibits myogenic differentiation. Journal of Biological Chemistry 277: 30690–30698. 28. Thomson DM, Porter BB, Tall JH, Kim HJ, Barrow JR, et al. (2007) Skeletal muscle and heart LKB1 deficiency causes decreased voluntary running and reduced muscle mitochondrial marker enzyme expression in mice. Am J Physiol Endocrinol Metab 292: E196–202. 13. Zhang T, Zaal KJ, Sheridan J, Mehta A, Gundersen GG, et al. (2009) Microtubule plus-end binding protein EB1 is necessary for muscle cell differentiation, elongation and fusion. Journal of Cell Science 122: 1401–1409. 29. Baas AF, Kuipers J, van der Wel NN, Batlle E, Koerten HK, et al. (2004) Complete Polarization of Single Intestinal Epithelial Cells upon Activation of LKB1 by STRAD. Cell 116: 457–466. 14. Straube A, Merdes A (2007) EB3 regulates microtubule dynamics at the cell cortex and is required for myoblast elongation and fusion. Current Biology 17: 1318–1325. 15. Conacci-Sorrell M, Ngouenet C, Eisenman RN (2010) Myc-nick: a cytoplasmic cleavage product of Myc that promotes alpha-tubulin acetylation and cell differentiation. Cell 142: 480–493. 30. Asada N, Sanada K, Fukada Y (2007) LKB1 regulates neuronal migration and neuronal differentiation in the developing neocortex through centrosomal positioning. Journal of Neuroscience 27: 11769–11775. 31. Supporting Information We thank Kevin Claffey and Vladimir Rodionov for helpful comments on the manuscript. We thank Kevin Claffey and Vladimir Rodionov for helpful comments on the manuscript. Figure S1 Microtubule destabilization is more condu- cive to differentiation than is microtubule stabilization. C2C12 cells were treated with vehicle (control), 200 mm Taxol, or 200 mm Nocodozole and cultured differentiation media for two days, followed by washout and continued differentiation. (A) Phase contrast images at differentiation day 2 (in the presence of drugs) and day 3 (one day after drug washout) show that both Taxol and Western blotting g q y Samples were separated on 10% SDS-PAGE gels, transferred to PVDF membranes, and blocked in 2% BSA in Tris buffered saline (TBS) with 0.1% Tween and 0.1% Sodium Azide. Primary antibodies were incubated for 1–2 hours at room temperature or overnight at 4uC, and secondary antibodies were incubated for 1 hour at room temperature. The Enhanced Chemiluminescence Fempto reagent (Thermo Scientific, Rockford, IL, USA) was used to develop blots. Signal was imaged digitally on either a Genesnap (Syngene USA, Frederick, MD, USA) or Biorad (Biorad) system within the gray range of the camera. Blots were multiply probed for proteins of different masses without stripping. Author Contributions Conceived and designed the experiments: JST KDK. Performed the experiments: IM WPL ND RMG. Analyzed the data: JST. Contributed reagents/materials/analysis tools: KDK. Wrote the paper: JST. Conceived and designed the experiments: JST KDK. Performed the experiments: IM WPL ND RMG. Analyzed the data: JST. Contributed reagents/materials/analysis tools: KDK. Wrote the paper: JST. References Barnes AP, Lilley BN, Pan YA, Plummer LJ, Powell AW, et al. (2007) LKB1 and SAD kinases define a pathway required for the polarization of cortical neurons. Cell 129: 549–563. 16. Antin PB, Forry-Schaudies S, Friedman TM, Tapscott SJ, Holtzer H (1981) Taxol induces postmitotic myoblasts to assemble interdigitating microtubule- myosin arrays that exclude actin filaments. Journal of Cell Biology 90: 300–308. PLoS ONE | www.plosone.org February 2012 | Volume 7 | Issue 2 | e31583 February 2012 | Volume 7 | Issue 2 | e31583 9 LKB1 Role in Myoblasts LKB1 Role in Myoblasts 32. Shelly M, Cancedda L, Heilshorn S, Sumbre G, Poo MM (2007) LKB1/ STRAD promotes axon initiation during neuronal polarization. Cell 129: 565–577. 42. Belmont LD, Hyman AA, Sawin KE, Mitchison TJ (1990) Real-time visualization of cell cycle-dependent changes in microtubule dynamics in cytoplasmic extracts. Cell 62: 579–589. 33. Shelly M, Poo MM (2011) Role of LKB1 - SAD/MARK pathway in neuronal polarization. Developmental Neurobiology: Epub ahead of print. y p 43. Belmont LD, Mitchison TJ (1996) Identification of a Protein that Interacts with Tubulin Dimers and Increases the Catastrophe Rate of Microtubules. Cell 84: 623–631. polarization. Developmental Neurobiology: Epub ahead of print. p p gy p p 34. Amin N, Khan A, St Johnston D, Tomlinson I, Martin S, et al. (2009) LKB1 34. Amin N, Khan A, St Johnston D, Tomlinson I, Martin S, et al. (2009) LKB1 regulates polarity remodeling and adherens junction formation in the Drosophila eye. Proc Natl Acad Sci U S A 106: 8941–8946. 44. Maiato H, Sampaio P, Sunkel CE (2004) Microtubule-associated proteins and their essential roles during mitosis. International Review of Cytology 241: 53–153. y 35. Zhang S, Schafer-Hales K, Khuri FR, Zhou W, Vertino PM, et al. (2008) The tumor suppressor LKB1 regulates lung cancer cell polarity by mediating cdc42 recruitment and activity. Cancer Research 68: 740–748. 45. Nakano A, Kato H, Watanabe T, Min KD, Yamazaki S, et al. (2010) AMPK controls the speed of microtubule polymerization and directional cell migration 45. Nakano A, Kato H, Watanabe T, Min KD, Yamazaki S, et al. (2010) AMPK controls the speed of microtubule polymerization and directional cell migration through CLIP-170 phosphorylation. Nature Cell Biology 12: 583–590. 36. Baas AF, Smit L, Clevers H (2004) LBK1 tumor suppressor protein: PARtaker in cell polarity. Trends in Cell Biology 14: 312–319. through CLIP-170 phosphorylation. Nature Cell Biology 12: 583 46. Vingtdeux V, Davies P, Dickson DW, Marambaud P (2011) AMPK is abnormally activated in tangle- and pre-tangle-bearing neurons in Alzheimer’s disease and other tauopathies. Acta Neuropathol 121: 337–349. 37. Kojima Y, Miyoshi H, Clevers HC, Oshima M, Aoki M, et al. (2007) Suppression of tubulin polymerization by the LKB1-microtubule-associated protein/microtubule affinity-regulating kinase signaling. Journal of Biological Chemistry 282: 23532–23540. 47. Greco SJ, Sarkar S, Johnston JM, Tezapsidis N (2009) Leptin regulates tau phosphorylation and amyloid through AMPK in neuronal cells. Biochem Biophys Res Commun 380: 98–104. y 38. LKB1 Role in Myoblasts Verhey KJ, Gaertig J (2007) The tubulin code. Cell Cycle 6: 2152–2160. y Verhey KJ, Gaertig J (2007) The tubulin code. Cell Cycle 6: 2152–21 39. Dorfman J, Macara IG (2008) STRADalpha regulates LKB1 localization by blocking access to importin-alpha, and by association with Crm1 and exportin-7. Molecular Biology of the Cell 19: 1614–1626. 48. Zammit PS, Partridge TA, Yablonka-Reuveni Z (2006) The skeletal muscle satellite cell: the stem cell that came in from the cold. Journal of Histochemistry and Cytochemistry 54: 1177–1191. gy 40. Baas AF, Boudeau J, Sapkota GP, Smit L, Medema R, et al. (2003) Activation of the tumour suppressor kinase LKB1 by the STE20-like pseudokinase STRAD. EMBO Journal 22: 3062–3072. 49. Katajisto P, Vaahtomeri K, Ekman N, Ventela¨ E, Ristima¨ki A, et al. (2008) LKB1 signaling in mesenchymal cells required for suppression of gastrointestinal polyposis. Nature Genetics 40: 455–459. J 41. Karuman P, Gozani O, Odze RD, Zhou XC, Zhu H, et al. (2001) The Peutz- Jegher gene product LKB1 is a mediator of p53-dependent cell death. Molecular Cell 7: 1307–1319. PLoS ONE | www.plosone.org February 2012 | Volume 7 | Issue 2 | e31583 10
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3 Die ›Übersetzung‹ von Finnegans Wake
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3 Die ›Übersetzung‹ von Finnegans Wake Das vorhergehende Kapitel zeigte, wie Arno Schmidt im ›Übersetzungsfehler‹, der ihm in seinem publizistischen Werk der 1950er-Jahre vielfach Anlass zu wüster Polemik ist, ein poetisch-sprachspielerisches Potenzial entdeckt hat, das als Technik zur sprachspielerischen Multiplikation der Bedeutungsebenen eingesetzt werden kann. Denn in der Latenz der Fremdsprache ist die eigentliche Bedeutung der falschen Übersetzung weiterhin vorhanden. Handelte es sich dabei um eine erste Vorahnung der Möglichkeiten, die im wilden Übersetzen liegen, so widmet sich dieses Kapitel der Entdeckung des wilden Übersetzens durch Arno Schmidt. In den Jahren 1960 und 1961, also chronologisch genau zwischen der publizistischen ›Übersetzungskritik‹ und der Arbeit an Zettel’s Traum, liegt Arno Schmidts intensive Auseinandersetzung mit Finnegans Wake von James Joyce.41 Dabei entwickelt Schmidt nicht nur eine eigenwillige Interpretation dieses Texts, sondern unternimmt auch den Versuch, als einer der ersten diesen Text – zumindest in Teilen – ins Deutsche zu übersetzen. Auch wenn dieses Unternehmen aus verschiedenen, teils auch verlegerischen Gründen im Verlauf des Jahres 1961 gescheitert ist,42 liegt zumindest eine kleinere Zahl von Typoskript-Blättern mit Übersetzungsproben vor. Dabei steht der genaue Status der Texte im Wake-Typoskript allerdings von Beginn weg infrage: Schmidt bezeichnet sie einerseits als ›Übersetzung‹, nennt sie aber auch eine Lesbarmachung von Finnegans Wake, mit der sich eine reduktionistische Interpretation des Werks von James Joyce verbindet: Arno Schmidt glaubt, entdeckt zu haben, 41 Eine positivistische Chronik aller Zeugnisse von Arno Schmidts Beschäftigung mit James Joyce und seinem Werk bietet Rathjen 2020b, 9–31. Schmidts Beschäftigung mit dem Ulysses und die Kritik an der Übersetzung fällt in die Jahre 1956–57 (10–13). Nach Übersetzung von Stanislaus Joyce’ My Brothers’s Keeper im Jahr 1959 (14–17) beginnt Arno Schmidt im Frühsommer 1960 in Vorbereitung für einen Radioessay, den er Heißenbüttel versprochen hat, Finnegans Wake zu lesen (19–20) und entwickelt bald schon seine ›Entdeckung‹, die These des Bruderzwistes. 42 Im Winter 1960–61 gab Arno Schmidt mehreren Verlegern gegenüber Auskunft, eine Übersetzung von Finnegans Wake sei kaum machbar (Rathjen 2020b, 24–26), kündigte Ende Februar jedoch Hans Dieter Müller vom Goverts-Verlag an, er sehe sich, nachdem er einige kürzere Übersetzungsproben erstellt habe, nun doch in der Lage, eine gute Übersetzung von Finnegans Wake versprechen zu können (Rathjen 2020b, 26). Als der Goverts-Verlag kurz darauf absagte, suchte Schmidt nach Publikationsmöglichkeiten für die Produkte seiner Übersetzungsarbeit (Rathjen 2020b, 27). Allerdings zerschlug sich sowohl der Plan, Übersetzungsproben in der ZEIT abzudrucken (Rathjen 2015, 23), als auch die Suche nach einem Verlag, weil Schmidt erfuhr, dass der Rhein-Verlag zusammen mit dem Neske-Verlag eine deutsche Übersetzung von Finnegans Wake publizieren wolle und ihm der Suhrkamp-Verleger Siegfried Unseld aus Zürich mitteilte, er komme für die Verleger als Übersetzer nicht infrage (Rathjen 2015, 23). Open Access. © 2023 bei dem Autor, publiziert von De Gruyter. Dieses Werk ist lizenziert unter der Creative Commons Namensnennung 4.0 International Lizenz. https://doi.org/10.1515/9783111001692-016 318 III Arno Schmidt dass es sich beim gesamten Text – den er teils heftig kritisiert43 – um einen stark chiffrierten Schlüsselroman handle, der in jeder einzelnen Szene eine aggressive Abrechnung mit James’ Bruder, Stanislaus Joyce, enthält.44 Schmidts ›Übersetzung‹ steht ganz im Dienst dieser Interpretation. Immer wieder werden beim Übersetzen einzelne zentrale Stellen gewaltsam durch Fehlübersetzungen umgeschrieben, womit Schmidts Deutung des Wake auf scharfe Kritik stoßen wird.45 Schmidts Typoskript hat eine eigene literarische Qualität. Nicht Erzählen steht im Zentrum, sondern intensive Spracharbeit. In einem Versuch, die Arbeit doch noch zu verwerten, werden einzelne Abschnitte dieser Übersetzung in einer Selbstkompilation neu zusammengestellt. Material daraus ist nicht nur in Zeitungsessays und Funkdialogen verwendet worden, sondern auch in den Ländlichen Erzäh­ lungen.46 Damit wurden einzelne Abschnitte in einer dichten, expressionistischen Prosa gestaltet, welche die Materialität der Sprache in den Vordergrund stellt. Zu diesem Zweck wurden die Bruchstücke der ›Übersetzung‹ zum Teil weiterbearbeitet. Zugleich findet innerhalb der literarischen Texte eine Reflexion der Tatsache statt, dass diese Passagen übersetzt sind. Meine These ist also, dass Schmidt in der scheiternden Arbeit an Finnegans Wake das poetische Potenzial des Übersetzens entdeckt, wenn es von seinen 43 Jäger 2009, 113: »Verglichen mit den uneingeschränkt positiven, wo nicht euphorischen Würdigungen des ›Ulysses‹ fällt die stellenweise vernichtende Kritik an Joyce’ letztem Roman auf, die umso überraschender erscheint, wenn man bedenkt, mit welchem Zeit- und Arbeitsaufwand Schmidt sich mit dem Text auseinandergesetzt und welchen Stimulus ›Finnegans Wake‹ für sein literarisches Schaffen ab 1960 dargestellt haben muss.« 44 BA II/2, 447: »Und während James sich selbst als Heiligen – mit einigen liebenswürdigen Schwächen – dafür aber mit ganz ungewöhnlich langer & harter Märtyrerzeit porträtiert hat, / richtet sich die volle Wut seiner Natur, die ganze Genialität seiner Niedertracht, gegen ihn, der langsam in den Vordergrund des literarischen Interesses zu schreiten beginnt: gegen Kain, gegen Stanislaus, seines Bruder’s Hüter!« Senn 1970, 272 rezensiert Der Triton mit dem Sonnenschirm (1969), Schmidts gesammelte Essays zu Finnegans Wake, folgendermaßen: »The book makes good reading once the particular bias is noticed, and the author does not make it difficult to notice the bias: Finnegans Wake is best approached as autobiography, and its basic theme is James taking Stanislaus to task, a spiteful settling of old accounts.« Für Jäger 2009, 112 liegt der Grund in den »verbalen Attacken gegen die Person James Joyce« darin, dass Schmidt zu Stanislaus eine »persönliche Affinität entwickelt« habe. 45 Gradmann 1988, 162. Einen retrospektiven Überblick über den Forschungsstand in den 1960erJahren und die Kontroverse, die die Schmidt’schen Wake-Deutung ausgelöst hat, bieten Reichert und Senn 1993, 7–10. 46 Stellennachweise in Rathjen 1988, Rathjen 1995 sowie Rathjen 2020b, 97–160. Während die ersten beiden Bände alle James Joyce-Zitate und Anspielungen, chronologisch geordnet nach dem Auftauchen in Arno Schmidts Werk präsentiert, präsentiert die neu erschienene Materialsammlung dieselben Zitate geordnet nach ihrer Quelle bei James Joyce. 3 Die ›Übersetzung‹ von Finnegans Wake 319 üblichen Fesseln (semantische Äquivalenz, Orientierung an Textintention, keine Zusätze etc.) befreit wird. Gerade weil der Versuch scheiterte, Finnegans Wake ins Deutsche zu übersetzen, öffnen sich Möglichkeiten zur Umdeutung, wobei die Produkte des Übersetzens zum Zweck der eigenen literarischen Produktion zweckentfremdet wurden. Dieses Kapitel beschäftigt sich mit Schmidts Auseinandersetzung mit diesem fremdsprachigen Text und dem literarischen Schaffen zweiter Stufe im Anschluss daran. Im Zentrum dieses Kapitels steht das Wake-Typoskript, um das sich eine Reihe von weiteren Texten von Schmidt versammeln, die in denselben Jahren entstanden sind. Diese Konstellation ist ein großer Glücksfall, insofern Schmidts Auseinandersetzung mit Finnegans Wake auf unterschiedlichen Ebenen überliefert ist. Dies erlaubt es nicht nur, eine kontextbezogene Funktionalisierung von Textabschnitten zu rekonstruieren, sondern ermöglicht auch einen Einblick in Zwischenstufen des Übersetzungsprozesses. Das Kapitel versucht zunächst, die vorhandenen Texte und Materialien dieser produktionsästhetischen Konstellation überblickend zu erfassen, um sich danach den Textstücken im Wake-Typoskript nacheinander aus drei unterschiedlichen Perspektiven zu nähern und es als Übersetzung von Finnegans Wake, als Kommentar dieses Werks sowie abschließend als eigenständige Textfragmente zu verstehen. Die Materialien dieser Konstellation lassen sich in fünf distinkten Stufen der Bearbeitung assemblieren: der englische Text, die handschriftlichen Anmerkungen in Schmidts Arbeitsexemplar, das eigentliche Typoskript mit den ›Übersetzungsproben‹, die Veröffentlichungen in Radio und Zeitung sowie die literarischen Texte Schmidts, in die übersetztes Material aus Finnegans Wake eingegangen ist. Dazu kommen zusätzlich die vor allem biografische Sekundärliteratur zu James Joyce und Finnegans Wake in Schmidts Bargfelder Bibliothek,47 sowie verschiedene Briefwechsel und Tagebucheinträge, die eine chronologische Verortung erlauben. Die Grundlage für den Arbeitsprozess stellt der Text von Finnegans Wake von James Joyce dar. Arno Schmidts Exemplar ist 1950 bei ›Faber and Faber‹ in London erschienen und wurde von diesem gemäß Besitzvermerk auf dem Vorsatzblatt des Buches im Jahr 1956 erworben.48 Diese Textausgabe stellt den Referenzpunkt für jede Auseinandersetzung von Schmidt mit Finnegans Wake dar; seine Seiten- und Zeilenzählung bezieht sich durchwegs darauf. Eine zweite Ebene stellen die hand- 47 Verzeichnet in: Gätjens und Jürgensmeier 2003. 48 Gätjens und Jürgensmeier 2003, 390: »549.6. Finnegans Wake. London, Faber and Faber, (1950). 2 Bl., 628 S., 1 Bl. Orig.-Leinen. (B 10.6.32/St. 2)«. Zitiert wird die Ausgabe nach dem Faksimile von Arno Schmidts Arbeitsexemplar (A. Schmidt 1984) unter der Sigle FW. 320 III Arno Schmidt schriftlichen Annotationen und Anmerkungen mit Blei- und Buntstiften dar, die Schmidt direkt in sein Arbeitsexemplar von Finnegans Wake eingetragen hat. Diese Kommentare zeigen eine intensive Auseinandersetzung mit dem ganzen englischsprachigen Text; es findet sich kaum eine Seite ohne handschriftliche Eintragung.49 Zu den Strategien, die dazu eingesetzt werden, den Text lesbar und verständlich zu machen, gehören nicht nur die Kommentierung einzelner Worte am Seitenrand, sondern auch die Segmentierung satzlogischer Einheiten, die Markierung von rekurrierenden Wörtern sowie die Auszeichnung von Passagen, die als direkte Rede gedeutet werden. Drittens ist ein separates Konvolut vorhanden, das gemäß dem Deckblatt eine »Übersetzung ins Deutsche sowie Anmerkungen und ein Nachwort« zu Finnegans Wake von Arno Schmidt enthält.50 Schmidt hat daran zwischen Mitte Februar und Mai 1961 gearbeitet, die Entstehung des Texts auf dem Deckblatt jedoch auf das Jahr 1960 zurückdatiert.51 Erhalten sind 24 großformatige52 Typoskript-Blätter mit Übersetzungen einzelner Passagen, wobei jede Typoskriptseite genau einer Druckseite in Schmidts Arbeitsexemplar entspricht. Die Blätter sind einseitig mit Schreibmaschine beschrieben und in unterschiedlichem Maße mit Text gefüllt; die Spanne reicht von einigen wenigen Zeilen bis zur Wiedergabe der vollen Seite. Von den 628 Druckseiten in Schmidts Wake-Ausgabe wurden 7 Seiten vollständig und zusätzliche 12 Seiten partiell übersetzt; 5 Seiten des Typoskripts enthalten keine Übersetzungen. Zum Typoskript gehören zusätzlich das Deckblatt sowie eine Seite mit Vorbemerkungen, die das Vorgehen beim Übersetzen und die formalen Eigenheiten der Textpräsentation erläutern. Eine weitere Seite enthält keine Übersetzung im engeren Sinn, sondern kommentierendes »Material« (FW-Ü 142).53 Zwei weitere 49 Man vergleiche die polychrome Wiedergabe dieser Eintragungen im Faksimile des Arbeitsexemplars: A. Schmidt 1984. 50 A. Schmidt 1984, s. pag. [Titelblatt]. Das Faksimile der Typoskript-Blätter ist der Reproduktion von Schmidts Arbeitsexemplar lose beigelegt und wird unter der Sigle FW-Ü zitiert. Die ›Titelseite‹ und die ›Vorbemerkungen‹ des Typoskripts sind unpaginiert; ich zitiere sie im Fließtext jedoch mit den kleinen römischen Ziffern, also als FW-Ü i und ii. 51 Rathjen 2015, 22. 52 Diese Blätter weisen ein ungewöhnlich langes und schmales Papierformat von 30,2 × 59,8 cm auf (Angabe im Innendeckel von Schmidt 1984, das Faksimile gibt die Blätter »etwas verkleinert[]« (Rathjen 2015, 22) wieder. Das Format war in seiner Breite durch die Öffnung von Arno Schmidts 12-Zoll-Schreibmaschine (12″ = 30,48 cm) beschränkt, während die Höhe des Bogens genug Platz lässt für eine Kopfzeile und 36 Zeilen mit doppeltem Durchschuss. Das Papier ist also deutlich größer als im Tagebucheintrag vom 16.2.1961 angekündigt: »Einfall zur Beschaffung von billigen Din A 3 Seiten, für FW=Übersetzung und Lilienthal.« (Rauschenbach 1996, 28; Hinweis Rathjen 2015, 22). 53 So enthält das Blatt zu Seite 402 unter anderem eine tabellarische Auflistung von zwölf Figuren, die auf der entsprechenden Seite erwähnt werden, und die Schmidt als Statthalter für die zwölf Monate dechiffriert. 3 Die ›Übersetzung‹ von Finnegans Wake 321 Bogen sind fast vollständig leer: Es handelt sich, wenn es überhaupt gestattet ist, das Wort zu benutzen, um die ›Übersetzung‹ der Titelei zum dritten Teil des Buches. In der Mitte von Seite 401 prangt deshalb eine stolze römische Drei, während das Blatt zu Seite 402 neben der Kopfzeile, wie in der Vorlage, überhaupt keinen Text enthält. Die Schmidt’schen Übersetzungsproben umfassen nur einen kleinen Bruchteil der Textmenge von Finnegans Wake.54 Kriterien bei der Auswahl der übersetzten Textstellen lassen sich kaum identifizieren; auffällig ist aber Schmidts Verzicht darauf, bei der Übersetzung am Anfang zu beginnen. Einzelne der übersetzten Seiten von Finnegans Wake zeichnen sich durch besondere Merkmale aus, wie die Kritzeleien auf Seite 308; andere, wie der größere Block der Seiten 401–406, gehen mit dem Beginn des dritten Buchteils einher. Andere Abschnitte werden ohne Regel ausgewählt. So beginnt die erste übersetzte Passage auf Seite 30 nicht nur mitten in einem Absatz, sondern gar mitten in einem Satz. Vom Typoskript zu unterscheiden sind, viertens, die verschiedenen interpretativen und publizistischen Texte, die Schmidt im Zuge seiner Beschäftigung mit Fin­ negans Wake in Form von Funkdialogen und Feuilletonartikeln veröffentlicht hat. In diese deutschsprachigen Texte sind in unterschiedlichem Umfang kürzere Übersetzungen und Kommentare von einzelnen Passagen aus dem Wake eingegangen. Dabei handelt es sich um die folgenden Texte, chronologisch geordnet nach dem Zeitpunkt ihrer Entstehung:55 Schmidts erster Text zu Finnegans Wake ist der Entwurf »Der Meister des Odysseus« (Niederschrift: Juni/Juli 1960)56 für einen von Helmut Heißenbüttel erbetenen Radiobeitrag über James Joyce, den er verwirft, um das Thema konziser zu fassen,57 und an dessen Stelle der Rundfunkdialog »Das Geheimnis von Finnegans Wake« (Niederschrift: Juli 1960)58 und eine in Fließtext umgearbeitete Artikelserie für die ZEIT mit demselben Titel treten (Niederschrift: Nov. 1960).59 Diese Texte waren also schon gedruckt, bevor das Wake-Typoskript entstanden ist. Im Jahr darauf, nach der Entstehung des Wake-Typoskripts, ent- 54 Der größte zusammenhängende Abschnitt umfasst die ersten Seiten des dritten Teils von Finne­ gans Wake; weitere Abschnitte finden sich in den Kapiteln 1,2 (FW 30–31 und 39), 1,3 (FW 63–64), 1,6 (FW 166–167) und 1,7 (FW 182–184); 2,1 (FW 244–245; 259) und 2,2 (FW 308) sowie 3,1 (FW 401–406). 55 Die Chronologie der Texte folgt der Darstellung von Rathjen 2015, 19–24. 56 Vgl. BA S/1, 216–241, 387–388 [Anm.]. 57 Rathjen 2015, 19–20. 58 Vgl. BA II/2, 433–473, 489 [Anm.]; zu den direkten Joyce-Zitaten, Rathjen 1988, 19, 46–50. 59 Vgl. BA III/4, 32–54, 470 [Anm.]. Diese Texte wurden als Artikelserie in der ZEIT veröffentlicht: 1. Das Geheimnis von Finnegans Wake. Eine neue Interpretation des Alterswerkes von James Joyce. Von Arno Schmidt. In: Die Zeit vom 2.12.1960. 2. Seines Bruders Schmäher. Das Geheimnis von Finnegans Wake (II). Von Arno Schmidt. In: Die Zeit vom 9.12.1960. 3. Der Höllenschlüssel. Das Geheimnis von Finnegans Wake. In: Die Zeit vom 16.12.1960; zu den Joyce-Zitaten, Rathjen 1988, 50–74. 322 III Arno Schmidt standen der Dialog »Der Triton mit dem Sonnenschirm« (Niederschrift: Juni 1961),60 worin große Teile der Wake-Übersetzung verwertet wurden, sowie der exegetische Aufsatz »Kaleidoskopische Kollidier=Eskapaden« (Niederschrift: September 1961),61 der zu zwei Dritteln aus einer stichwortartigen kommentierenden Inhaltszusammenfassung des Texts besteht und der erst 1969 als Teil des Sammelbandes Triton mit dem Sonnenschirm erschienen ist. Die fünfte und letzte Schicht umfasst Schmidts literarische Texte, in die einzelne Bruchstücke aus den Joyce-Übersetzungen in unterschiedlichem Umfang eingegangen sind. Dies gilt für den Erzählband Ländliche Erzählungen (1964). Insbesondere in den beiden Erzählungen Kundisches Geschirr und Piporakemes! zeigt sich dabei eine ausgeprägte metatranslatologische Selbstreflexivität.62 Von Arno Schmidts Arbeitsexemplar von Finnegans Wake existiert ein Faksimile.63 Weitere grundlegende Materialien inklusive einer Chronologie und einer Zusammenstellung von Joyce-Zitaten in Schmidts veröffentlichten Texten wurden in zwei philologischen Publikationen von Friedhelm Rathjen erschlossen. Ferner hat Rathjen bereits in den 1990er-Jahren einen Aufsatz zu Schmidts Wake-Übersetzung veröffentlicht, der versucht, eine Ehrenrettung des Texts vorzunehmen, indem er die literarischen Qualitäten der Texte für sich betont und den Wake zu einem »Textgenerator« erklärt, der eigene, neue Texte entstehen lässt64 und in dieser Hinsicht den Boden für meine Überlegungen bereitet. Neben Rathjens Veröffentlichungen gibt es kaum substanzielle Publikationen zu Schmidts Auseinandersetzung mit Finnegans Wake.65 Schmidts intensive Auseinandersetzung mit Finnegans Wake, deren Chronologie Rathjen rekonstruiert hat, fällt vornehmlich in die Jahre 1960–1961. Dabei ist es schlagend, wie sich Schmidts Selbsteinschätzung in Bezug auf den Wake innerhalb von wenigen Monaten grundlegend wandelt. Noch im Frühsommer 1960 hat Schmidt das Gefühl, sich mit dem Text zu wenig auszukennen, um einen Radiotext darüber zu verfassen, während er im Herbst bereits überzeugt ist, mit seiner These vom verschlüsselten Bruderzwist über eine innovative Interpretation des Werks 60 Vgl. BA II/3, 31–69, 394 [Anm.]. Der Text des Dialogs mit dem in Klammern gesetzten Untertitel: »Überlegungen zu einer Lesbarmachung von FINNEGANS WAKE von James Joyce« wurde 1969 bei Stahlberg zusammen mit weiteren Schriften zu Joyce unter dem Titel »Der Triton mit dem Sonnenschirm« (A. Schmidt 1969) veröffentlicht; dazu Rathjen 1988, 78–93. 61 Vgl. BA III/4, 115–129, 473 [Anm.] Der Text erschien zum ersten Mal in TmS (Triton mit dem Sonnenschirm. Stahlberg 1969); Rathjen 1988, 95–99. 62 Zu letzterem Text, vgl. R. Simon 2014a. 63 A. Schmidt 1984. 64 Rathjen 2010b, 133. 65 Relevante Sekundärliteratur: Rathjen 2015; Hildesheimer 2006; Armonies 1995; Rathjen 1991; (wieder in: Rathjen 2010b); Weninger 1986. 3 Die ›Übersetzung‹ von Finnegans Wake 323 zu verfügen, die zu einer grundlegenden Publikation führen wird.66 Im Frühjahr darauf verfertigt er seine Übersetzungsproben, ohne aber vom Verlag einen Auftrag und die Rechte zur Übersetzung erhalten zu haben.67 Damit setzt die Phase der literarischen Textverwertung ein. In dieser komplizierten Konstellation stellt das Typoskript den zentralen Nexus dar, denn Material daraus gelangt in viele der publizierten Texte. Wenngleich ein Blick auf die Chronologie zeigt, dass nicht alle Schmidt’schen Übersetzungen direkt daraus hervorgegangen sein können,68 stellt das Typoskript die Schaltstelle dar, welche die verschiedenen Publikationen mit dem englischsprachigen Ausgangstext verknüpft. Trotz der Charakterisierung als ›Übersetzung‹ ist der textuelle Status von Schmidts Wake-Typoskript nicht so eindeutig, wie man dies erwarten könnte. Dies zeigt sich nicht nur in der typografischen Textdarbietungsstrategie, die Kommentaren und Anmerkungen einen zentralen Platz in einer zweiten Textspalte einräumt (s. u.), sondern auch in der Charakterisierung des Typoskripts in den »Vorbemerkungen«. Darin räumt Schmidt der Idee großen Platz ein, Finnegans Wake sei prinzipiell in seiner Gesamtheit zu entschlüsseln. Sei man erst einmal »darauf [ge]kommen«, dann sei die »Lösung« nicht selten »sehr 'einfach'« (FW-Ü ii). Überdies bezeichnet Schmidt das Dokument – in polemischer Abgrenzung zu Georg Goyerts heftig kritisierter Übersetzung des Ulysses – als eine »Lesbarmachung« des englischen Texts, die nicht mehr als eine »erste Näherung[]« (FW-Ü ii) sein könne. Der Begriff der Lesbarmachung wird auch in Schmidts publizistischen Texten zum Wake verwendet, wobei Schmidt ihn zum Gegenteil einer Übersetzung erklärt, die ihm bei einem Text wie Finnegans Wake als unmöglich erscheint: Eine ‹Übersetzung› im normalen Sinne des Begriffes ist nicht möglich; da wohl noch Rhythmus & Vokalharmonie, niemals aber die hoffnungslos auf englischer Orthografie & Aussprache aufgebauten Wortwitze unter genauer Erhaltung ihres Doppel= und Dreifachsinns in einer anderen Sprache wiederzugeben wären. Was jedoch sehr möglich wäre – und längst hätte geschehen sollen: […] das wäre eine seiten= und zeilengetreue ‹Entzerrung ins Deutsche›; eine Lesbarmachung unter Zugrundelegung eines der erwähnten Lesemodelle. (BA III/4, 128) 66 Rathjen 2015, 20–23. 67 Rathjen 2015, 23. Vgl. auch Drews 2014c, 58: »Unglücklicherweise wurde in den Jahren um 1960 trotz großer Bemühungen Schmidts nichts aus jenem großen Übersetzungsprojekt […]. Damals schrieb Schmidt einen Brief an mehrere deutsche Verlage mit dem Angebot, ›Finnegans Wake‹ von James Joyce in etwa drei- bis fünfjähriger Arbeit für ein Honorar von 36 000 Mark zu übersetzen.« 68 Den Artikel »Das Geheimnis von Finnegans Wake« (BA III/4, 32–54) publizierte Arno Schmidt in drei Teilen im Dezember 1960 in der ZEIT (vgl. Müther 2019, 920–921). Dieser Text enthält bereits Übersetzungen einzelner Sätze, obgleich der Artikel publiziert wurde, bevor die Typoskript-Blätter entstanden sind. 324 III Arno Schmidt Eine so definierte Lesbarmachung bringt demnach immer eine Reduktion der Bedeutungsmöglichkeiten des Texts mit sich, insofern die ›Übersetzung‹ bereits vor dem Hintergrund eines bestimmten Lesemodells, das heißt, einer bestimmten interpretatorischen Position erfolgt. Von den verschiedenen Lesarten eines Mehrfachsinns werden damit nur jene aufgegriffen, die sich in dieses Modell integrieren lassen, was – dies scheint zumindest die Hoffnung zu sein – zu einem kohärenten und verständlichen Text führen soll. Nun ist der Aufsatz Kaleidoskopische Kolli­ dier=Eskapaden, aus dem dieses Zitat stammt, erst ein halbes Jahr nach dem WakeTyposkript entstanden und reflektiert damit bereits die praktische Erfahrung der übersetzerischen Auseinandersetzung mit Finnegans Wake. Gleichwohl scheint der Begriff der Lesbarmachung bereits zu diesem früheren Punkt ähnlich konzipiert gewesen zu sein, denn die Idee der Lesemodelle tauchte schon im Herbst zuvor auf, als Schmidt dem »kultischen« Lesemodell (BA III/4, 34) aus dem Skeleton Key von Campbell und Robinson ein »zweites Lesemodell« (BA III/4, 35) entgegenzustellen versucht, das in jedem Satz des Wake den tiefen Bruderzwist zwischen James und Stanislaus Joyce verschlüsselt sieht, sodass es sich dabei um »eines der infamsten Pasquille der Weltliteratur handle« (BA III/4, 36). Dabei bleibt es offen, wie weit der Geltungsanspruch von Schmidts These geht. Zunächst ist von einem in »sich widerspruchsfreie[n] Lesemodell[]« (BA III/4, 34) die Rede. Dies lässt es zu, dass auch in Schmidts Perspektive zwei (oder mehr) Lesemodelle gleichwertig nebeneinanderstehen können. Der Nachdruck, mit dem sich Schmidt in der Folge aber gegen das kultische Lesemodell von Campbell und Robinson wendet, deutet darauf hin, dass er für sein eigenes Lesemodell exklusive Geltung beansprucht. Schmidts Wake-Typoskript, insofern es einer Lesbarmachung des Texts im Sinne eines bestimmten Lektüremodells verpflichtet ist, ist Übersetzung und Kommentar zugleich. Es überführt den Text in eine andere Sprache, verfolgt aber eine eigene Agenda: Ziel ist es, Verstecktes zu entschlüsseln und an die Oberfläche zu holen. Dabei findet beim Übersetzen eine Umkehrung der üblichen Texthierarchie statt. Das Übersetzen stellt sich nicht in den Dienst des ursprünglichen Texts, sondern ist erster Linie der Interpretation verpflichtet. Fasst man Schmidts Bruderzwist-Theorie als Fehl- und Überinterpretation69 des Texts auf, so liegt hier ein Fall vor, in dem der unrechtmäßige Gebrauch eines Texts im Sinne Ecos tatsächlich in Kombination mit dem wilden Übersetzen stattfindet. So wie die Schmidt’sche Interpretation die Grenzen der hermeneutischen Billigkeit überschreitet, so überschreitet sein Wake69 Die Rezension von Senn 1970, 272 steht stellvertretend für die gesamte englischsprachige JoyceForschung, in der die Bruderzwist-These als indiskutabel gilt: »This book may mislead unWaked German readers, but Joyceans who are unlikely to be shaken in their fundamental beliefs by the somewhat lopsided views put forth with great vigour, and who can take some erratic readings in their stride, may find it amusing after all the trite notes that we tend to provide.« 3 Die ›Übersetzung‹ von Finnegans Wake 325 Text die Normen des regulären Übersetzens, wobei beide Transgressionen mit Blick auf dasselbe argumentative Ziel erfolgen.70 Als zwei Modi des Umgangs mit einem fremden Text laufen ›Übersetzen‹ und Kommentieren bis zu einem gewissen Punkt kongruent zueinander. Beide haben das Ziel, einem Publikum einen Text zugänglich zu machen, der diesem aufgrund von Differenzen im sprachlichen und kulturellen Code unzugänglich ist. Dennoch unterscheiden sich die Funktionen im Einzelnen markant. Wo das Übersetzen auf einen einzigen Text abzielt und daher die diversen Polysemien des Ausgangstexts in sich aufnehmen muss, zielt der Kommentar auf deren explizite Offenlegung und dabei in vielen Fällen auf Vereindeutigung. Ebendarum bietet es sich an, Schmidts Beschäftigung mit Finnegans Wake unter diesen beiden Aspekten gesondert darzustellen. Damit gehen auch unterschiedliche Blickrichtungen einher: Die übersetzungskritische Perspektive nimmt den englischsprachigen Text als Ausgangspunkt und erschließt sich den deutschen Text erst vor diesem Maßstab und nach der Maßgabe der impliziten Erwartungen an eine reguläre Übersetzung. Die Kommentarperspektive führt zu einer Umkehrung der Verhältnisse und zu einer Lektüre des englischen Texts vor dem Hintergrund des Deutschen. Diese beiden Perspektiven nehmen den Text in seinem Bezug auf den jeweils anderen Text wahr. Es bietet sich darum an, Schmidts Wake-Typoskript noch in einer dritten Hinsicht zu untersuchen: Als einen für sich stehenden Text, bei dem sich die Frage nach seiner Literarizität stellt. In den nächsten drei Abschnitten soll je eine der drei Perspektiven auf das Wake-Typoskript eingenommen werden: Zunächst die Perspektive der Übersetzungskritik und jene des Kommentars, um schließlich das Wake-Typoskript für sich allein zu untersuchen. 3.1 Das Wake-Typoskript als Übersetzung Die übersetzungskritische Perspektive fragt, was von Finnegans Wake in Schmidts Typoskript erhalten bleibt. Die Entscheidung, keine Übersetzung im engeren Sinne, sondern eine Lesbarmachung des Texts vorzunehmen, führt – wie sich zeigen wird – dazu, dass sowohl die Mehrsprachigkeit als auch die Polysemie des Ausgangstexts zurückgenommen werden. Gleichwohl wird das Konvolut von Typoskriptblättern auf dem Deckblatt als eine »Übersetzung ins Deutsche« (FW-Ü i) deklariert, was die Erwartung an den Text entscheidend prägt. In den »Vorbemerkungen« zum Typoskript werden das Vorgehen beim Prozess der Übertragung und die formale 70 Vgl. Eco 1990a, 47–48, darauf die Entgegnung von Culler 1994, der sich für ›Überinterpretation‹ ausspricht. 326 III Arno Schmidt Konzeption des Wake-Typoskripts ausführlich dargestellt, wobei das Augenmerk auf der Explikation der typografischen Gliederung der einzelnen Seiten liegt. Dabei wird das Konvolut ausdrücklich als Übersetzung präsentiert, wobei die minutiösen Bemerkungen den Eindruck höchster philologischer Exaktheit vermitteln. So wird festgelegt, die Übersetzung erfolge »seiten= und zeilengetreu« (FW-Ü ii), sodass zur deutschsprachigen Übersetzung auch die englischsprachige Sekundärliteratur herangezogen werden könne. Auch wird am linken Rand des Haupttexts eine Zeilenzählung eingefügt. Diese enge formale Bindung an den Ausgangstext ist zwar für die künftige Leserschaft, die sich den englischen Text mithilfe dieser Übersetzung erschließen will, von großem Nutzen, insofern die parallele Lektüre beider Texte vereinfacht wird. Gleichzeitig stellt sie aber eine übersetzerische Herausforderung dar. Durch den engen zeilenweisen Bezug zwischen Ausgangs- und Zieltext, dürfte der Text zu einer starken Ausrichtung an der Syntax und am Wortlaut der Vorlage tendieren. Angesichts der vielfach langen Sätze in der englischen Vorlage und der sparsam eingesetzten Interpunktion ist dies allerdings nicht leicht zu realisieren. Hinzu kommt, wie Schmidt in seinen übersetzungskritischen Publikationen der Fünfzigerjahre selbst festhält,71 dass eine deutsche Übersetzung aus dem Englischen aufgrund der unterschiedlichen Wort- und Satzlängen der beiden Sprachen übers Ganze gesehen etwas mehr Platz einnimmt als die Vorlage. Als heuristisches Instrument zur Beurteilung der Qualität von Übersetzungen definiert Schmidt einen auf die Zahl der Buchstaben bezogenen »Vergrößerungsfaktor«, der bei »sorgfältig gearbeiteten Übersetzungen« vom Englischen ins Deutsche bei 1,1 zu liegen habe (BA III/4, 9).72 Liegt der Faktor darunter, dann sei dies ein Indiz von Kürzungen, liege er darüber, sei der Text bei der Übersetzung »verwässert« worden (BA III/4, 350). In den Übersetzungsproben, die Schmidt im Triton abdruckt, unterbietet er diese Vorgabe. Kaum je kommt er über einen Faktor von 1,04 hinaus; in zwei Abschnitten 71 Diese »jedem Leser bei der Beurteilung von Übersetzungen aus dem Angelsächsischen anzuempfehlende Klugheitsregel« (BA III/4, 9) findet sich zuerst in Von deutscher Art und Kunst (1959); Schmidt selbst bezeichnet sie bereits dort den »Schmidt’schen Vergrößerungsfaktor« (BA III/4, 9). Die Faustregel wird dann in vielen weiteren Besprechungen angelsächsischer Übersetzungen von Schmidt verwendet, um die Qualität einer Übersetzung zu beurteilen, so in seinem Essays Das Buch Mormon (BA III/3, 69), Schutzrede für ein Graues Neutrum (BA III/3, 349). Ausdrücklich an Arno Schmidt angelehnt, versuchte Stalph 1994, 485 nach demselben quantitativen Prinzip auch für Übersetzungen vom Japanischen ins Deutsche einen »Äquivalenzwert« als Bewertungsmaßstab festzulegen. 72 Die bemerkenswerte Kürze der Wake-Übertragungen bemerkt Rathjen 1988, 204, Schmidts Vermögen, Finnegans-Wake so »ohne nennenswerten Mehrbedarf an Wörtern in eine deutsche Fassung zu bringen, verlangt dem Wortstatistiker ein Staunen ab«, und er schließt daraus, dass Schmidt notwendigerweise semantische Einbußen in Kauf genommen haben müsse, denn es sei unbestritten, dass eine Übersetzung von Finnegans Wake, die »auch nur annähernd alle im Urtext vorhandenen Sinnbezüge bewahren will, additive Verfahren anwenden« müsse (Rathjen 1988, 205). 3 Die ›Übersetzung‹ von Finnegans Wake 327 werden sogar weniger Zeichen verwendet als im Ausgangstext. Bedenkt man, dass Wortspiele mehrere Bedeutungsebenen übereinanderlegen und damit Informationen im Text weiter verdichten, so stellt sich der formalistische Anspruch auf eine zeilengetreue Wiedergabe des Texts noch schwieriger zu erfüllen dar.73 Rathjens begründet dies mit der Feststellung, Schmidt habe den Wake regelmäßig in verkürzender Weise übersetzt, auf Wortreihungen und lange Komposita weitgehend verzichtet und damit die komplexen Mehrfachbedeutungen des Wake im Haupttext seiner Übersetzung nicht immer hinreichend wiedergegeben. Diese Reduktion des mehrfachen Schriftsinns, die Rathjen anhand der Übersetzungsproben im Triton diagnostiziert, dürfte sich nicht zuletzt durch die formal-typografische Vorgabe der Zeilentreue im Typoskript erklären, in dem die rechte Spalte zumindest konzeptuell für Bedeutungsdifferenzierungen vorgesehen ist.74 Diese Parallelisierung zielt darauf ab, die Übersetzung so zu konzipieren, dass sie nicht für sich allein konsultiert wird, sondern ein permanentes Vergleichen mit der Vorlage nahelegt. Bereits diese formale Ausgangslage hält dazu an, die Übersetzung als eine Art Krücke zu verstehen, die einem Publikum, das die englische Sprache beherrscht, von der sprachlichen Komplexität des Wake aber überfordert ist, einen leichteren Zugang hin zu einem ersten Verständnis des Texts ermöglicht. Die Tendenz zum Kommentar ist dem Typoskript unmittelbar eingeschrieben. Trotzdem ist dieser Hinsicht auf das Typoskript eine übersetzungskritische Perspektive entgegenzustellen, die genau in die andere Richtung geht und versucht, sich die Konstellation vom englischen Text her zu erschließen. Diese Blickrichtung muss, wenn sie den Erwartungen und Gesetzen des regulären Übersetzens verpflichtet ist, die klassische Frage nach Gewinn und Verlust beim Übersetzen stellen, das heißt, welche Bedeutungspotenziale und sprachlichen Eigenheiten von Finne­ gans Wake sich auch im Typoskript wiederfinden lassen. Sie kann sich nicht auf das Typoskript allein verlassen, sondern muss sich die Bedeutungspotenziale von Finnegans Wake selbstständig erschließen. Das Ideal einer solchen Übersetzungskritik verlangt danach, dass alle Bedeutungsmöglichkeiten des Ausgangstexts bekannt sind, um im Vergleich dazu die Differenz zu markieren. Hier stellt sich das methodologische Problem, dass ein umfassendes Verständnis dieses Texts nicht zu erreichen ist. Es scheint auch im Sinne einer historisch adäquaten Rekonstruktion angemessen, diese Untersuchung darauf zu beschränken, bei der Rekonstruktion der einzelnen Textstellen aus- 73 So kommt man für die mittlere Spalte in Schmidts Typoskript, die den übersetzten Text enthält, knapp über 80 Zeichen pro Zeile (inklusive Leerzeichen); während selbst eine eng gedruckte Druckzeile in Schmidts Wake-Ausgabe von Faber & Faber kaum mehr als 60 Zeichen enthält. 74 Tabelle bei Rathjen 1988, 204. 328 III Arno Schmidt schließlich auf jene Werke der Sekundärliteratur zum Wake zurückzugreifen, die auch Arno Schmidt zum Zeitpunkt der Entstehung des Übersetzungstyposkripts nachweislich zur Verfügung standen.75 Im direkten Vergleich einzelner Passagen lassen sich dabei hinsichtlich der Veränderungen klare Tendenzen feststellen, die bei der übersetzerischen Bearbeitung des Texts entstanden sind. Dazu gehört die sprachliche Vielfalt, genauer: die Semiodiversität76 des Ausgangstexts, die in Schmidts Typoskript nur in geringem Maße wiedergegeben wird. Selbst in Fällen, in denen eine Nachbildung eines Worts in deutscher Sprache problemlos möglich wäre, wird das Wort im Typoskript in vielen Fällen durch eine generische Form wiedergeben, die zwar den Begriffsgehalt abbildet, die außergewöhnliche Wortwahl des Ausgangstexts aber gänzlich ignoriert. So wird das Wort »ethnarch«, bei James Joyce aus gr. ἔθνος (Volk) und ἀρχός (Herrscher) zusammengesetzt, schlichtweg mit »König[]« (FW-Ü 30:20) wiedergegeben, das Wort »obscuritads« mit seinen spanischen Anklängen trotz der Existenz des deutschen Worts ›Obskuritäten‹ mit »Finsternissen« (FW-Ü 244:15); desgleichen wird »scielo«, das dem spanischen ›cielo‹ (Himmel) den Anlaut des englischen ›sky‹ verpasst und beiden Wörtern damit eine gemeinsame etymologische Wurzel einschreibt, geradezu banal als »mein Himmel« übersetzt (FW-Ü 244:25) Die vielfältige Sprachigkeit77 der Wörter unterschlägt Schmidt durchwegs, sie wird auch in der Randspalte kaum benannt. Diese Übersetzungen verletzen zwar nicht das Prinzip denotativer Äquivalenz, geben den Text aber trotzdem nicht adäquat wieder, insofern sie den Wake von seiner sprachlichen Vielfalt befreien. Deutlich zeigt sich die Tendenz hin zur Monolingualität des Deutschen auch bei der Wiedergabe der eröffnenden Passagen des dritten Teils. Dieser beginnt, so rekonstruieren Campbell und Robinson im Skeleton Key, mit nächtlichem Glocken- 75 Es gibt zwei Quellen, um zu rekonstruieren, auf welche Sekundärliteratur Schmidt zugreifen konnte: Erstens, das Abkürzungsverzeichnis am Ende der Vorbemerkungen des Typoskripts selbst; zweitens, die verzeichnete Sekundärliteratur in Arno Schmidts Bibliothek mit einem Erscheinungsdatum oder einem Datumseintrag auf dem Vorsatzblatt vor Mai 1961. Unter den 11 Titeln im »Verzeichnis der Abkürzungen« finden sich vor allem die anderen literarischen Texte von James Joyce (inkl. »'Scribbledehobble' (J.J.'s Notizbuch)«, zum Wake [FW-Ü ii]) und Stanislaus Joyce’ My Brothers Keeper, plus die Biografien von Gorman 1957; und Ellmann 1959 sowie, ganz zuoberst, den Skeleton Key von Robinson und Campbell 1944, der mit großer Wahrscheinlichkeit den einzigen Stellenkommentar zum Wake darstellt, den Schmidt konsultierte. Im Bibliotheksverzeichnis finden sich ein Band einer Ausgabe der Briefe von James Joyce (Gilbert 1957), die Memoiren von Colum und Colum 1959, die beiden literaturwissenschaftlichen Schriften von Tindall 1959 sowie Atherton 1959. Ein kommentiertes Verzeichnis von Schmidts Joyce-Handbibliothek bietet der Materialienband von Rathjen 2020b, 53–95, der auch Schmidts Rezeptionsspuren darin verzeichnet. 76 Dembeck 2021, 360, 347–348 (zum Begriff ›Semiodiversität). 77 Vgl. Arndt, Naguschewski und Stockhammer 2007, 26, siehe S. 54 (Anm. 121). 3 Die ›Übersetzung‹ von Finnegans Wake 329 schlag und der Stimme des Nachtwächters, der die Stunden ausruft, während das Elternpaar im Bett liegt.78 Hark! Tolv two elf kater ten (it can’t be) sax. Hork! Pedwar pemp foify tray (it must be) twelve. (FW 403:1–4) Die nächtliche Stunde ist nicht zu bestimmen; die Zahlen gehen wild durcheinander, nicht nur in ihrer Folge, sondern auch in ihrer sprachlichen Herkunft, als seien sie halb geträumt. So scheint auch Schmidt die Szene aufzufassen, der in der rechten Spalte des Wake-Typoskripts in einer handschriftlichen Anmerkung die beiden einzelnen Wörter als Schnarchlaute deutet und der Person einen »¾=Schlaf« attestiert; eine Kontextualisierung, die mit der Deutung im Skeleton Key weitgehend übereinstimmt.79 Die handschriftlichen Eintragungen in Schmidts Arbeitsexemplar von Fin­ negans Wake erlauben es im Detail zu rekonstruieren, wie die Passage im Zuge des Übersetzens einer Entschlüsselung unterzogen wurde. Links neben dem Wort »pedwar« ist mit Bleistift vermerkt: »Welsch 4«, über »pemp«, dem zweiten Wort in dieser Zeile wird verzeichnet: »Armenisch 5«. Am oberen Seitenrand finden sich darüber hinaus die beiden ungeordneten Zahlenreihen, die als das semantische Gerüst dieses Abschnitts identifiziert wurden, denn die beiden Ausrufe und auch die Klammerbemerkungen werden ausgelassen. 12 4 2 5 11 5 4 3 10 … 6 12 Indem zur Wiedergabe arabische Ziffern eingesetzt werden, präsentieren sich die beiden Zeilen übersprachlich: Die Zahlen werden konzeptuell dargestellt, ohne dass festgelegt wird, in welcher Sprache sie auszusprechen sind. Die sprachliche Diversität der Passage wird in den handschriftlichen Anmerkungen zwar gekennzeichnet, gleichzeitig wird davon abstrahiert, indem als Kern des Abschnittes eine reine Zahlenreihe präsentiert wird. Und so ist die Übersetzung im Haupttext fast durchgehend deutsch. 78 Robinson und Campbell 1944, 258: »This chapter opens with the night sounds of bells tolling an unidentifiable hour, and the voice of the watch. We view the parental couple in bed.« 79 Robinson und Campbell 1944, 258. 330 III Arno Schmidt Haarrch !* Zwölf; Zwei; Elf; Quater; Zehn; (es kann nicht) Sex sein. Horrch ! Viere; Pümpf; Fümmewe; Drei; (es muß wohl) Zwölf sein. (FW-Ü 403:1–4) Das schwedische Wort »tolv« wird in dieser Liste genauso auf seinen reinen Zahlenwert reduziert, wie auch die englischsprachigen Zweit-Lesarten zu den deutschen Zahlwörtern »elf« (›Elfe‹/›Alb‹) und »tray« (›Tablett‹) in dieser Übersetzung vollständig nivelliert werden. Die einzige Information, die in diesem Kontext für die Übersetzung als relevant gesetzt wurde, scheint das verquere Zählen zu sein, während alle anderen Aspekte irrelevant zu sein scheinen. Im englischen Text findet zwischen dem ersten und dem letzten Element der mehrsprachigen Zahlenwörterreihe ein textinterner Übersetzungsvorgang statt: Das schwedische ›tolv‹ wird ins englische ›twelve‹ überführt. Auch dies wird in der Übersetzung in keiner Weise repräsentiert: Hier sind das erste und das letzte Wort der Reihe identisch. Doch die Entscheidung zur Reduktion auf die reine Denotation der Begriffe wird gleichwohl nicht konsequent durchgeführt. Gewisse Verfremdungen werden auch im Zieltext aufgegriffen. Dabei wird jedoch, mit einer Ausnahme, darauf verzichtet, auf Elemente zurückzugreifen, die aus anderen Sprachen als der Deutschen entstammen. Vielmehr wird die entfallene sprachliche Diversität zumindest in der zweiten Zahlenreihe durch einige gemäßigte dialektale Abweichungen vom Standarddeutschen kompensiert. Der Grad der Verschlüsselung wird dadurch reduziert. Während »Pedwar« und »pemp« sich vor dem Hintergrund des lexikalischen Inventars der englischen Sprache abheben, sind »Pümpf« und »Fümmewe« problemlos auf ›fünf‹ zurückzuführen. Selbst im einzigen Fall, in dem die fremdsprachige Wortform per se erhalten bleibt, wird das damit verbundene Wortspiel beseitigt. In Schmidts Übersetzung wird zwar das lateinische Iterativzahlwort »Quater« (=viermal) erhalten, die Orthografie wird im Vergleich zum Ausgangstext aber normalisiert und vereindeutigt: Im englischen Text von Finnegans Wake kann das lateinische Zahlwort aufgrund seiner veränderten Orthografie (»kater«) hingegen auch mit dem Schlüssel der deutschen Sprache gelesen werden. Im Wake-Typoskript hingegen findet sich von dieser männlichen Katze keine Spur mehr. Dabei gibt es keinen zwingenden Grund dafür, dieses Wortspiel, das sich einem deutschen Publikum leichter erschließt als einem englischen, im Übersetzungsprozess zu tilgen. Selbst die Etablierung einer zweiten parallelen Spalte, welche die nicht wiederzugebenden Aspekte polysemer Passagen aufnehmen könnte, wird in diesem Abschnitt nicht dafür genutzt, diese zusätzlichen Informationen aufzunehmen. Durch all diese Anpassungen wird im Übersetzungsprozess performativ eine klare Unterscheidung etabliert: Zwischen relevanten Aspekten des englischen Texts einerseits und solchen, die diesem nur akzidentell 3 Die ›Übersetzung‹ von Finnegans Wake 331 zukommen. Zum ersten Teil werden semantische Grundstrukturen (wie die wirre Zahlenreihe im vorliegenden Beispiel) gezählt, während Aspekte der rhetorischen Durchformung des Texts (wie Wortspiele, Mehrdeutigkeiten und Wechsel zwischen Sprachen) im Typoskript nicht widergespiegelt werden. Die Bearbeitung zeigt also eine Präferenz, auf die Ebene der Signifikate zu gelangen, während die Polyvalenz der Signifikanten unbeachtet bleibt. Geht in den besprochenen Beispielen im Übersetzungsprozess durchweg Information verloren, bleibt noch der Fall der Wiedergabe des letzten Zahlworts in der ersten Zeile. Das Wort »sax« (FW 403) unterscheidet sich vom Zahlwort ›six‹ nur durch den Vokal. Es bedeutet, lateinisch aufgefasst, ›Stein‹; alternativ bezeichnet es eine Hiebwaffe sowie das Instrument ›Saxofon‹. Obwohl genau dieselben drei Buchstaben im Deutschen über dasselbe Bedeutungsspektrum verfügen, entscheidet sich Schmidt dagegen, es entsprechend wiederzugeben. An dessen Stelle verändert er die Lautung und setzt »Sex« (FW-Ü 403) ein. Dadurch unterstellt er dem Wake eine erotisch-sexuelle Dimension, die diesem zumindest an dieser Stelle nicht gegeben ist. Wenngleich dieses Verfahren im Wake-Typoskript nur selten zum Einsatz kommt, wird genau diese Form der entlarvenden Übersetzung, die die im Text versteckte Perversion an die Oberfläche zu heben versucht, im Zuge der Auseinandersetzung mit Edgar Allan Poes literarischem Werk in Zettel’s Traum eine zentrale Rolle spielen. Trotzdem bemerkt auch Rathjen, Schmidts Übersetzungen erlaubten sich im Vergleich mit anderen Übersetzern von Finnegans Wake in den »kreativen Momenten wesentlich mehr Freiheiten gegenüber dem Original«.80 Rathjen verweist dabei auf extreme Fälle »bis hin zur absichtlichen Nasführung des Lesers, die aus ›Asia in Ireland‹ ›Asia in Zornland‹ macht«;81 weil sich darin das englische Wort ›ire‹ (Zorn) verbirgt. Genauso entscheidend sind die kleinen Abweichungen beim Übersetzen, die in beiläufiger Zugabe und Umstellung einzelner Buchstaben geschehen. Diese sprachspielerische Kreativität zeigt sich nicht nur wie oben beim Wort »Sex«, sondern auch bei der Übersetzung der Phrase »for behemuth and mahamoth« (FW 36), worin Schmidt einerseits die anagrammatische Vertauschung der Endsilben korrigiert, sodass sich das hebräische Ungeheuer »Behemoth« nicht mehr nur in der Latenz des Wortspiels befindet (FW-Ü 36); dem anderen Wort verpasst er aber zusätzlich an der Stelle des ›h‹ ein Doppel-›m‹, sodass das Mammut zum »Mammamut« (FW-Ü 36) wird, wodurch aus diesem eine Instanz der großen Mutter wird. Ähnlich wild übersetzt Schmidt in gewissen Fällen, indem er gänzlich darauf verzichtet, die literale Bedeutung zu übersetzen, sodass nur ein Wortspiel seinen 80 Rathjen 1988, 210. 81 Rathjen 1988, 206. 332 III Arno Schmidt Weg in die Übersetzung findet. Ein solches Beispiel findet sich im Falle der folgenden Dialogsequenz – »where’s he? At house, to’s pitty.« (FW 244:19–20), wobei in Schmidts Arbeitsexemplar ein Bleistifteintrag das ›s‹ und ›p‹ über das Spatium hinweg mit einem Bogen verbindet. Schmidt übersetzt im Typoskript: »wo ist er ? Zuhaus; zum Spucken speien« (FW-Ü 244:19–20). Diese Übersetzung, ganz gleich in welcher Variante, ergibt sich nur, wenn man das ›s‹ direkt an das folgende Wort anschließt und den Leerschlag dazwischen ignoriert, obwohl es in diesem Fall grammatisch weitaus naheliegender wäre, das apostrophierte ›s‹ als umgangssprachliche Verkürzung des Personalpronomens ›his‹ aufzufassen. Die Auskunft müsste daher lauten, der männliche Protagonist sei zu Hause, und zwar zu seinem Leidwesen (›to his pity‹); schließlich könnte er ja auch im Wirtshaus oder sonst wo sitzen. Schmidt reduziert in seiner Übersetzung nicht nur die Mehrsprachigkeit, sondern auch die semantische Mehrdeutigkeit und gibt dem Text stellenweise gezielt eine neue Ausrichtung. Dass diese mit den klassischen Erwartungen an eine Übersetzung kaum zur Deckung zu bringen ist, versteht sich von selbst. Die Reaktionen auf Schmidts Umgang mit dem Wake werden am Ende des nächsten Abschnittes thematisiert. Zunächst aber gilt es, die ›Lesbarmachung‹ des Wake von der anderen Seite her zu betrachten: in seiner Funktion als Kommentar zum englischen Text. 3.2 Das Wake-Typoskript als ›Lesbarmachung‹ Schmidt folgt im Typoskript einer Idee, die sich auch in allen begleitenden publizistischen Texten findet: dass Finnegans Wake ein einfaches Modell von Chiffrierung und De-Chiffrierung zugrunde liege. Dass also Joyce eine oder mehrere Bedeutungen in den Text hineingelegt und die sprachliche Oberfläche artifiziell verdunkelt habe, was die Lektüre zwar erschwere, aber nicht unmöglich mache. Der notwendige Prozess der Entschlüsselung wird als hermeneutische Herausforderung dargestellt, die noch nicht vollständig gemeistert sei, die im Prinzip jedoch durchaus geleistet werden könne. Den Anmerkungen wird im Wake-Typoskript viel Platz eingeräumt. Gemäß Schmidts »Vorbemerkungen« (FW-Ü i–ii) ist der rechte Rand der Typoskript-Seite für Kommentare und Anmerkungen zu einzelnen Formulierungen im Haupttext reserviert, die mit einem Asterisk gekennzeichnet werden. Für diese Marginalien werden vier unterschiedliche Funktionen spezifiziert: Sie dienen erstens dazu, weitere Bedeutungsebenen von englischen Wörtern zu verzeichnen, die sich im Haupttext der Übersetzung nicht unterbringen lassen. Diese Varianten werden durch ein ›V:‹ eingeleitet. Angesichts der wortspielerischen Sprache in Finnegans Wake treten diese Explikationen von Polysemie in Schmidts Typoskript bemerkens- 3 Die ›Übersetzung‹ von Finnegans Wake 333 wert selten auf.82 Zweitens werden die Marginalien für »Anmerkungen des Übersetzers« im engeren Sinne verwendet, die durch runde Klammern gekennzeichnet sind. Diese Anmerkungen dienen teils dem klassischen Sachkommentar. Sie werden daneben aber auch zur Aufschlüsselung von Wortspielen in der Übersetzung eingesetzt, und um den Literalsinn einer im Text geschilderten Konstellation zu benennen, der aus der Darstellung erst rekonstruiert werden muss.83 Schließlich werden die Anmerkungen an wenigen Stellen sogar für direkte Lektüre-Anweisungen – an Schmidt selbst oder ans Publikum? – verwendet, wie in FW-Ü 30:14, wo es heißt: »ab hier Doppelsinnigkeit beachten !« Drittens werden die Marginalien dazu eingesetzt, im Finnegans Wake motivisch verwendete »Symbolworte« (FW-Ü ii)84 zu kennzeichnen; viertens wird ein Nummerncode etabliert, um das Auftauchen von wichtigen Figuren im Text zu verzeichnen. Die letzten beiden Punkte dienen dazu, die schnelle Erschließung des Texts zu erleichtern. Der Einsatz mehrspaltiger Textlayouts ist in literarischen Texten von Arno Schmidt nichts Außergewöhnliches, im Jahr 1961 aber noch etwas recht Neues, denn Kaff auch Mare Crisium, das die Simultaneität unterschiedlicher Handlungsstränge und -perspektiven zum ersten Mal durch eine typografische Parallelisierung abbildete, erschien im Jahr zuvor.85 Dennoch unterscheidet sich die rechte Spalte der Wake-Übersetzung von diesen früheren Mehrspaltentexten, insofern die geschlossene narrative Darstellung in kleinste Anmerkungen zerteilt wird. In diesem fragmentierten Zustand nehmen die marginalen Vermerke das Mehrspal- 82 So wird beispielsweise das Wort »earwuggers« in der mittleren Spalte als »Ohrwürmer« wiedergegeben; dazu kommen in der Marginalie zwei weitere Lektürevarianten »V.: Einflüsterungen, 'Ohrenbläsereien'« (FW-Ü 31:11). Bei der Übersetzung dieser Passage ist die Herausforderung, dass es sich bei jener kleinen Episode um einen humoristischen Versuch handelt, zu erklären, wie »Humphrey Chimpden Earwicker« zu seinem Namen gekommen ist, was Schmidt dem Skeleton Key (Robinson und Campbell 1944, 56) hätte entnehmen können. In diesem textinternen ›etymologischen‹ Zusammenhang scheint es weitgehend vernachlässigbar zu sein, dass »earwuggers« auch »Einflüsterungen« sein können; wenn der entscheidende Bezug in der Materialität der Sprache beim Übersetzen verdeckt wird. 83 So wird der Satz »Gleich bricht ein Nachher x| an, im Bruchteil einer Sekunde, kraft des Zufalls=Weistums | seines Aus=Tickers«, die ›Übersetzung‹ von FW 308, »Mox soonly will be in a split second per the chancellory of his exticker«, mit einem Sternchen zum Schluss durch eine in doppelte Klammern gehüllte Marginalie erklärt: »Die Uhr schlägt« (FW-Ü 308:2–4). 84 Schmidt erläutert dies in den Vorbemerkungen (FW-Ü ii) wie folgt: »Immerwiederkehrende Symbolworte – z. B. HUT, STOCK, SUKKOTH, BLACK % TAN, undsoweiter – werden als solche kurz wiederholt, mit einem '!' Ausrufungszeichen dahinter.« Auch in seinen Essays zu Finnegans Wake spricht Arno Schmidt von ›Symbolworten‹ und meint damit bestimmte Wortfelder (z. B. die »Gruppe der ‹Phallen› Flöte; Stock; Pipette«, BA III/4, 116), die in seiner Lesart durchgehend auf eine andere – zumeist sexuelle – Bedeutung stehen. 85 Wirth 1998, 52. 334 III Arno Schmidt tenprinzip von Zettel’s Traum vorweg, in dem sich in der rechten Spalte ebenfalls einzelne Bruchstücke und Fragmente von Materialien finden – Zitate, Nachweise, Worterklärungen, implizite Anmerkungen, Dialogfetzen –, die in ein komplexes assoziatives Verhältnis mit dem links davon stehenden Text geraten, gleichzeitig aber auch immer wieder mit den Textfetzen auf derselben Seite interagieren. Der Haupttext der Wake-Übersetzung wird durch die Komplexität und schiere Gleichzeitigkeit des Texts überlastet. Dies führt dazu, dass nicht alle Aspekte in die Linearität des sprachlichen Syntagmas integriert werden können, sodass der Text notgedrungen zu den Rändern des Texts hin ausfransen muss. Was sich im Falle der Arbeit an Finnegans Wake jedoch noch als Konsequenz des Übersetzungsprozesses aufgedrängt hat, ist in Zettel’s Traum zu einer gezielt eingesetzten Textdarbietungsstrategie geworden. Folgt man den textgenetischen Spuren des Typoskripts zurück in Schmidts Arbeitsexemplar, so zeigt sich, dass die typografische Trennung zwischen der ›Übersetzung‹ im Haupttext und dem Kommentar in der rechten Spalte nicht immer so konsequent durchgehalten wurde, wie dies die Rigorosität der Vorbemerkungen glauben macht: Immer wieder sind Elemente mit einer kommentierenden Funktion in den Haupttext hineingerutscht. Dies gilt zum Beispiel für eine Passage zu Beginn von Kapitel I,2. Hier ist von einem Gärtner die Rede, der sich »under his redwoodtree« (FW 30:14) ausgeruht habe. Im Arbeitsexemplar findet sich zum letzten Wort eine handschriftliche Anmerkung, in der das lateinische Genus dieses Baumes verzeichnet wird: »Sequoia ~giganteá« (FW 30:14). An der entsprechenden Stelle im Typoskript lautet der Abschnitt im Kontext: Wir vernehmen daselbst […] daß […] der große alte Gärtner* das Tageslicht baß nützte, unter seinem Rotholzbaum* (Sequoia immer=gigantea), und der Sabbath=Nachmittag war schwül […] (FW-Ü 30:13–14)86 Die englische Bezeichnung des Baums wird zunächst in seine Bestandteile zerlegt – man könnte sagen, zu Kleinholz gehackt –, die allesamt einzeln und wortwörtlich übersetzt werden. Statt die lateinische Bezeichnung für jenen kalifornischen Baum, der im deutschen Sprachraum ob seines Wuchses als ›Mammutbaum‹ bekannt ist, in den Kommentar zu setzen, wird die Bezeichnung um das Adverb ›immer‹ ergänzt in den Haupttext integriert, was diesem die Anmutung eines wissenschaftlichen Texts verleiht. Der Asterisk im Text verweist wohl auf einen Kommentar in den 86 Der Asterisk im Text verweist zwar darauf, dass sich dazu am rechten Rand eine Anmerkung finde; diese bezieht sich allerdings nicht auf den »Rotholzbaum«, sondern verweist auf die von hier an zu beachtende »Doppelsinnigkeit« (FW-Ü 30:14) des Textes. 3 Die ›Übersetzung‹ von Finnegans Wake 335 Marginalien, hingegen nicht auf eine Anmerkung zum ›redwoodtree‹. Vielmehr wird darauf verwiesen, auf die »Doppelsinnigkeit« (FW-Ü 30:14) des Texts achtzugeben – gemeint ist wohl die Parallelisierung der Szene mit der biblischen Vertreibung aus dem Paradies. Diese Integration von Elementen des Kommentars in den Haupttext ruft Effekte hervor, die auch das kommentierende Übersetzen in der Geschichtklitterung zeigte. Einerseits wird durch diese Vergrößerung des Paradigmas das Narrativ suspendiert und andererseits die Zahl der Möglichkeiten zur textinternen Verknüpfung multipliziert, gerade auch auf der Ebene der sprachlichen Materialität. Gleichzeitig schreibt sich in diesen Abschnitten eine zweite Stimme in den Text ein, die in der Vorlage noch nicht vorhanden war. Schmidt übt als Übersetzer keine Zurückhaltung, indem er sich selbst respektvoll in der rechten Spalte marginalisiert. Vielmehr schreibt er sich ohne Scheu direkt in den Text von James Joyce ein. Die philologische Selbstdisziplinierung, die er in den Vorbemerkungen ausführlich inszenierte, bleibt kaum mehr als ein Vorwand. Gleichzeitig bedient sich auch Schmidts Interpretation von Finnegans Wake im Zuge der Entwicklung des Lesemodells ›Bruderstreit‹ selbst immer wieder sprachlicher Deutungsverfahren, die kaum anders denn als wilde Übersetzungen zu beschreiben sind. Dabei werden verschiedene in Finnegans Wake prominent platzierte Motive und Wörter über komplexe sprachliche Transformationsketten dahin gehend manipuliert, dass sie sich schließlich als mehrfach verschlüsselte Bezeichnungen für Stanislaus Joyce aufweisen lassen. In seinen Rekonstruktionen bedient sich Schmidt diverser Verfahren, um ›Äquivalenz‹ zwischen zwei Bezeichnungen zu etablieren: Dazu gehören semantische Übersetzungen zwischen unterschiedlichen Sprachen, metonymische Verhältnisse zwischen zwei Begriffen sowie verschiedene anagrammatische und paronomastische Operationen im Sprachmaterial. Ein prototypisches Beispiel für dieses Deutungsverfahren führt auf die außergewöhnliche Buchseite 308 von Finnegans Wake, welche diverse Möglichkeiten der Abweichung zum typografischen Normalzustand des Blocksatzes erprobt. In deren Zentrum steht eine Liste von zehn einsilbigen Wörtern, die im Skeleton Key auf die zehn Sephirot der Kabbala bezogen und in je eine himmlische, eine menschliche und eine physische Trinität der männlichen Gottheit gegliedert werden – plus die Null/Zehn, die das weibliche Prinzip symbolisiere.87 In der Fußnote zum fünften Element in dieser Liste, »Cush« (FW 308:9), die ein integraler Bestandteil dieser Buchseite ist, heißt es »1Kish is for anticheirst, and free my hand to him«. Links der Fußnote ist eine minimalistische Zeichnung abgedruckt, die das Zeigen einer langen Nase darstellt: Eine Hand, deren Daumen in Richtung des Hakens geführt 87 Robinson und Campbell 1944, 193–195. 336 III Arno Schmidt wird, der die Nase symbolisiert, die vier anderen Finger nach rechts zur Fußnote hin ausgestreckt.88 Im Wake-Typoskript werden die einsilbigen Wörter der englischen Ausgabe nicht wiedergegeben, sondern durch die einfachen deutschen Zahlwörter eins bis zehn ersetzt. Allerdings ergänzt Schmidt zwei weitere Spalten, die zu jedem der Wörter jeweils zwei Deutungen hinzustellen, die eine »ehrsam«, die andere »obszön« (FW 308:4–5).89 Die Fußnote wird im Wake-Typoskript hingegen weitgehend wörtlich wiedergeben: »Kish* steht für Anti=Christ**, und hiermit mach' ich ihm 'ne lange Nase !« (FW 308: FN). Links davon findet sich im Typoskript eine recht präzise gezeichnete Kopie der Skizze im Wake, rechts davon die folgenden beiden Kommentare: * 2 (Weidenkorb=wicker=basket=wicked basker=böser Badender–!)/​** Var:​Gegen=​Händer​(a la 'Antipode) =2« (FW-Ü 308) Wie diese komprimierte Notation zu lesen ist, schließt der Blick in den Aufsatz Das Geheimnis von Finnegans Wake auf. Dort wird dasselbe Gleichungssystem in voller Länge ausgeführt und erläutert.90 Darin argumentiert Schmidt dafür, ›Kish‹ als eine mehrfach verschlüsselte Maskierung für Stanislaus Joyce aufzufassen, sodass die Aussage dahin gehend gelesen werden kann, dass dieser der Antipode und Antichrist sei, dem eine lange Nase gedreht werde (BA III/4, 41). Zum ›Kish‹, so versucht Schmidt spekulativ zu beweisen, sei Stanislaus durch die folgende Kette von Assoziationen und Transformationen geworden: St[anislaus] schwamm, wusch sich, badete sich, sonnte sich, gern […] er war also ein ‹basker›, (heute heißt das nur noch ‹Sonnenbaden› allgemein; zur Shakespearezeit aber noch, und wer hätte das gewußt, wenn nicht James Joyce, ‹baden›). Aber St war, von J aus gesehen, ein ‹böser Badender›, ein ‹wicked basker›! Nun schüttele man die Endkonsonanten; dann wird aus ‹wicked basker› ein ‹wicker basket›, ein ‹Weidenkorb›: der aber heißt auf Irisch ‹KISH›: quod erat demonstrandum!). (BA III/4, 41) 88 Robinson und Campbell 1944, 194–195 [Anm. 71]. »Joyce’s footnote on Cush (p. 308) is highly important, indicating as it does that the descending power splits at the fifth rung into two opposing forces, Cush and Kish (brother battle again). The diagram thumbs the nose at Kish, Antichrist, Shem. The five fingers of the hand represent rung [sic!] five, and symbolize the incarnate Son. There are two sides to the hand, front and back. The word ›Antichrist‹ is transformed into ›anticheirst‹ (contra-hand); and the comment is a contemptuous ›back of my hand to him‹.« 89 So wird etwa »Cush« mit dem Wort »Fünf« wiedergegeben; daneben findet sich als ehrsame Lesart »Bargeld !« (via: ›Cash‹), als obszöne jedoch »Gib Effet !« (FW-Ü 308:9). 90 Dies belegt, dass Überlegungen aus dieser frühen Publikation direkt in die Arbeit am Typoskript eingeflossen sind. 3 Die ›Übersetzung‹ von Finnegans Wake 337 Um diese Verbindung herzustellen, ist eine Kette mit einem halben Dutzend Zwischenschritten vonnöten. Dabei ist zu beachten, dass die Reihenfolge der Elemente, die Schmidt in diesem Aufsatz wählt, jene des verschlüsselnden Gedankenprozesses ist, von dem er unterstellt, dass James Joyce ihn durchlaufen haben müsse. Schmidts Entschlüsselung würde dabei genau dem umgekehrten Pfad folgen. Sie beginnt mit der Entscheidung, ›Kish‹ nicht mit einer biblischen Figur in Verbindung zu bringen, sondern als Wort der irisch-gälischen Sprache aufzufassen und darum einer interlingualen Übersetzung ins Englische zu unterziehen. Schmidt, in dessen Bibliothek kein irisch-gälisches Wörterbuch stand, hat die Übersetzung vermutlich dem sogenannten Muret-Sanders entnommen, seinem präferierten englisch-deutschen Wörterbuch.91 In der von Schmidt benutzten fünften Auflage finden sich dafür vier Lemmata: Kish1 (kiſch) npr. Kis m (1. Sam. 9,1) Kish2 ſchott. (kiſch) npr., dim. von Christian1, Christopher. – Vgl. ~1, 3 und 4. kish3 irl. (kiſch) s. großer Korb. kish4 ⚙ irl. (kiſch) [dtſch Kies] s., metall. Bor=, Eiſen=ſchaum m.92 Unter diesen Varianten wählt Schmidt nicht einen der beiden Eigennamen, sondern greift, vermutlich mit Blick auf James Joyce’ irische Herkunft, den dritten Eintrag heraus. Die darin angegebene deutsche Übersetzung wird, assoziativ nachvollziehbar, sowohl im Typoskript als auch im Aufsatz zum Weidenkorb konkretisiert, was Schmidt sogleich wieder ins Englische übersetzt: »wicker basket«. Nur diese Form erlaubt es, durch eine anagrammatische Permutation die letzten Konsonanten 91 Vergleiche die Selbstauskunft Schmidts zur Qualität unterschiedlicher Wörterbücher: »MURET= SANDERS hieß das alte große Englisch=Deutsche Wörterbuch –: unser neuer LANGENSCHEIDT ist schlechter. Ist sogar beträchtlich unzulänglicher; (ich habe rund 20 Bände aus dem Angelsächsischen ins Deutsche übersetzt und weiß, was ich tu, wenn ich’s ausspreche: ich lege mir grundsätzlich den Alten neben die Schreibmaschine oder die Lektüre!). Denn er enthält mehr deutsche Ausdrücke zur Auswahl; mehr ältliche & Dialekt=Worte; hat Homonyme, die im neuen ganz fehlen; (und die immer wichtiger werden: da sieht man’s mit 1 Blick, wieso einem Engländer bei ‹vale› auch ‹vail› und ‹veil› – vielleicht sogar ‹whale›? – mit=einfällt: einfallen muß: er kann nicht anders! (Wer je JOYCE gelesen hat, wird wissen, wie ich hier auf praktisch die ganze zukünftige Literatur anspiele.)« (BA III/4, 408). Schmidt benützte den Muret-Sanders so intensiv, dass sich die Bindung zu lösen begann und er dasselbe Werk im Jahr 1971 ein zweites Mal antiquarisch erwarb und folgende Bemerkung im Vorsatz eintrug: »Arno Schmidt 3.VII.1971 (gekauft – (aus Bochum) – da mein altes Exemplar, (erstanden 1955, bei Bläschke i Darmstadt), sich infolge langen=fleißigen Übersetzer-Gebrauches ziemlich in lose Blätter aufgelöst hatte)« (zit. n. Gätjens und Jürgensmeier 2003, 27). 92 Muret und Sanders 1925, 1215; vgl. den Eintrag im Bibliotheksverzeichnis: Gätjens und Jürgensmeier 2003, 27; Nr. 49. 338 III Arno Schmidt der beiden Wörter umzustellen, sodass daraus der ominöse »wicked basker« entsteht.93 Dies wird von Schmidt im Typoskript als ›böser Badender‹ übersetzt, wohl wissend, dass diese Wortbedeutung im Englischen des 20. Jahrhunderts längst nicht mehr gebräuchlich ist.94 Beide Attribute aber werden im letzten Schritt als Eigenschaften von Stanislaus Joyce bezeichnet, sodass die Entschlüsselung des Worts mit der Identifikation von Stanislaus Joyce als dem Referenten dieser Beschreibung endlich abgeschlossen ist. Diverse Schritte in diesem Prozess verstoßen gegen die Kriterien hermeneutischer Billigkeit. Es steht außer Zweifel, dass das Ziel dieser entschlüsselnden Interpretation längst festgelegt war und das Auffinden der Kettenglieder eine ingeniöse kreative (und nicht: hermeneutische) Leistung darstellt, durch die der Bruder mit ›Kish‹ gleichgesetzt wird. Wie kontingent der Prozess ist, zeigt sich, wenn man sich alternativer Wörter erinnert, um die Eigenschaften ›böse‹ und ›Badender‹ in der englischen Sprache zu bezeichnen: statt ›basker‹ vielleicht ›bather‹ oder ›swimmer‹, statt ›wicked‹ eher ›evil‹, ›vicious‹, ›sinister‹ oder ›bad‹. Selbst wenn am Anfang dieses wilden Übersetzungsprozesses, wie Schmidt ihn konstruiert hat, wirklich der Name ›Stanislaus‹ sein sollte, dann hätte jede noch so minimale Abweichung vom rekonstruierten Pfad zu einem gänzlich anderen Resultat geführt. Die wilde Übersetzung wird in diesem Zusammenhang zu einem mehrfach eingesetzten Verfahren im Dienst einer spekulativen Hermeneutik des Verdachts. Nach exakt demselben Schema erklärt Schmidt auch das wiederholt auftretende Motiv des »Türken« zu einem chiffrierten Verweis auf Stanislaus Joyce, die über die Paronomasie der beiden Wörter ›muscle=man‹ und ›Muselmann‹ vermittelt wird – eine Übersetzung zwischen dem Deutschen und dem Englischen nach dem Prinzip materialer Äquivalenz. Der sportliche Stanislaus wird dazu metonymisch zum Muskelmann erklärt; während dem verkürzten deutschen Stereotyp folgend Muselmann und Türke als Synonyme behandelt werden.95 Dadurch lässt sich die Kette schließen, wobei Schmidts Rekonstruktion dieser Verschlüsselung auch in diesem Fall genauso fragwürdig wie interessant ist. Die interessantesten Verschlüsselungen treten auf: ‹Türke› wird Bruder St genannt; denn ein ‹Türke› ist ein ‹Muselmann›; dies, schluderig=englisch ausgesprochen, wird zum »muscle= man«; und Stanislaus war Sportler, Schwimmer, vierschrötiger Athlet. (BA III/4, 40) 93 Um ein reines Anagramm der Buchstaben handelt es sich wohlgemerkt nicht; Schmidt behandelt Fortis (t) und Lenis (d), zumal im Auslaut, als gleichwertige Laute. 94 Das nomen agentis ›basker‹ ist im Muret-Sanders nicht verzeichnet, wohl aber das Verb ›bask‹ mit denselben Bedeutungen, die auch Schmidt aufführt, mit eingeschlossen der Hinweis, die Bedeutung »warm baden« sei nicht mehr gebräuchlich; vgl. Muret und Sanders 1925, 206. 95 Vgl. die Beispiele in 1DWB 12,2737, die genau dieselbe Gleichsetzung vornehmen. 3 Die ›Übersetzung‹ von Finnegans Wake 339 Diese interpretative Strategie wird im Text immer wieder einer gewissen Selbstironisierung unterzogen, die dem antizipierten Vorwurf zu begegnen versucht, marginale Indizien würden allzu schnell mit Beweisen verwechselt. Ein skeptisches ›Wir‹, einem antiken Chor vergleichbar, darf sich in Klammern äußern und den vorschnell als Beweis präsentierten Schlüssen plausiblere Erklärungen entgegenstellen, wenn aus dem Vorhandensein von Apfelsinenschalen allein ein Bezug auf ›Stanislaus‹ etabliert wird, nur weil dieser die Frucht angeblich gerne aß.96 Diese inszenierten Einwände zeigen zwar an, dass ein Bewusstsein bezüglich der Unzulänglichkeit des interpretativen Verfahrens im Umgang mit dem Wake vorhanden ist, dienen aber in erster Linie der Abwehr. Denn die interpretativen Prämissen, die diese wilden Übersetzungsketten bei der Deutung hervorgebracht haben, haben auch die übersetzerische Arbeit am Typoskript beeinflusst. So spricht Rathjen von einer Tendenz zur didaktisierenden Vereinfachung des Texts, die sich im Zuge der Übersetzung im Typoskript immer wieder finden lasse. Zusammen mit einer gewissen Flüchtigkeit im Umgang mit dem Wortlaut des fremden Texts führen diese gezielten Eingriffe immer wieder dazu, dass aus dem »Impuls des verdeutlichenden Zitierens ein Korrigieren des Originals« werde.97 Doch bereits in den Ketten selbst zeigen sich die Abweichungen vom Prinzip des regulären Übersetzens. Technisch äußert sich dies in der Vielfalt von sprachlichen und semantischen Transformationsverfahren, die dabei zur Anwendung kommen. Fast entscheidender ist allerdings die veränderte Haltung dem Text gegenüber: Es findet eine Selbstermächtigung des Übersetzers und Interpreten statt. Statt sich dem Text hierarchisch unterzuordnen, erlaubt sich dieser, mit dem Text zu machen, was immer ihm gefällt. Dass Arno Schmidt dabei über ein Bewusstsein dafür verfügt, wie wild die Prinzipien der Übersetzung sind, die diesen Interpretationen zugrunde liegen, zeigt eine kleine Episode aus dem Funkdialog Der Triton mit dem Sonnenschirm. Beim vorliegenden Beispiel handelt es sich aber gerade nicht um eine Textstelle aus Finnegans Wake, sondern um ein kleines, hintersinniges Beispiel, das Sprecher B, der im Gespräch die Rolle des Skeptikers übernimmt, der Gruppe präsentiert. Dabei werden unterschiedliche Verfahren des wilden Übersetzens ausprobiert, um dem Satz »dii currendum serum« eine Auslegung in deutscher Sprache zu geben. 96 Vgl. BA III/4, 43: »in diesem Müll lagen Apfelsinenschalen, die Hülle der Frucht, die St notorisch gern aß: BEWEIS! (Wir freilich würden sagen: im Apfelsinenlande ein recht ‹unzureichender Grund›.)«; BA III/4, 43: daß das Blatt ‹Tee=Flecke› aufwies. Und St trank notorisch gern Tee: BEWEIS!!! (Wir freilich würden zweifeln: in einem Haushalt, wo vermutlich Alle gern Tee tranken? …). (Ebenfalls in BA II/4, 53 resp. 54). 97 Rathjen 1988, 202. 340 III Arno Schmidt B. […] Aber geben Sie doch selbst zu ..... oder nein; ich schreib’ was auf ..... (kleine Pause, während der er kritzelt; dann): So. Entziffern Sie mir doch mal das. Sie besitzen ja so viel – wie spricht das Buch? – »mirror=​minded curiosity«. A. (erstaunt=lateinisch murmelnd): ‹dii currendum serum› .....? – Hm...... Also das erste Wort wohl von ‹Dii›: Götter. C. (eifrig): Oder ‹dies›; der Tag? A.: Oder ‹dies›; ja. – ‹currendum› einwandfrei ‹laufen=​hasten=​eilen›. Vielleicht kämen aber auch ‹Kurrende=Sänger› mit ins Spiel? – Und ‹serum› endlich: ‹Heil=Serum›. C.: Oder, italienisch, ‹la sera›, der Abend. A.: Oder la sera; ‹en una sera, cosí serena›. – (laut): Ja; also, da gibt es mehrere ..... C. (bittend): Dürfte ich eventuell ....? – ‹Dii currendum serum›: ‹Der Tag eilt dem Abend zu›. B. (hüstelt lediglich). C.: Oder eben auch: ‹Götter eilen mit Heilung herbei›. Oder aber, beide Lösungen ineinander gearbeitet: ‹Der Tagesgott eilt singend dem heilsamen Abend zu›. Übertragen: ‹Die Sonne geht unter›! Und ‹tönt nach alter Weise›. B. (hüstelt; wie gehabt). A. (lobend): Sehr brav! Typisch C&R übrigens, die auch nur immer, unveränderlich=​rührend, auf die feinsinnigste Auslegung verfallen. – Ich jedoch, nicht nur durch das mokante Hüsteln unseres Freundes hier gewarnt, sondern auch auf eine ad=absurdum=​Führung gefaßt, nehme mein Herz in beide Hände; und wähle die dritte, jute=fädige, Möglichkeit: (mit Nachdruck): ‹Die Kuh rennt um’m See rum!› B. (anerkennend): Es ist natürlich ein uralter ‹Meidinger›, und Sie könnten’s gewußt haben – aber ich bin beruhigt […] (BA II/3, 44) Vor der Schlusspointe, in der als endgültige und korrekte Wiedergabe des pseudolateinischen Satzes »dii currendum serum« eine Übersetzung ins Deutsche nach dem Prinzip der materialen Äquivalenz präsentiert wird, werden eine Reihe von weiteren Deutungsversuchen präsentiert, die ebenfalls verschiedene Verfahren des wilden Übersetzens zur Anwendung bringen.98 Gerade deshalb ist es spannend, welche Tricks die anderen Gesprächsteilnehmer anwenden, um den Satz trotzdem ins Deutsche zu übersetzen. Nachdem die Sprache des Satzes unmittelbar als Latein identifiziert wurde, werden ganz zu Beginn verschiedene Vorschläge für Übersetzungen einzelner Wörter eingesammelt, wobei das Ganze mehr einem Wörterraten als einem methodischen Vorgehen gleicht. So werden mehrfach Übersetzungsvorschläge aufgeführt, die auf die vorhandenen Formen nicht wirklich passen. So gibt es keine flektierte Form des lateinischen Worts dies (Tag), die zur Form passt, die zu übersetzen ist. Auch die lateinische Grammatik bleibt in diesem Ratespiel unbeachtet. Wortarten werden umgebogen, die Gesetze der lateinischen Morphologie spielen bei der Übersetzung keine Rolle, und auch die Syntax wird weitgehend ignoriert. Statt die einzelnen Wörter aufgrund ihrer morphologischen Gestalt im Satz 98 Der Witz des ›lateinischen‹ Satzes ist die Tatsache, dass er sich nach den Regeln der Kunst gar nicht übersetzen lässt, weil es sich dabei gar nicht um einen grammatisch korrekten Satz handelt. 3 Die ›Übersetzung‹ von Finnegans Wake 341 ins Verhältnis zu setzen, werden sie aneinandergereiht und dann aufgrund ihrer angenommenen Bedeutung ins Satzgefüge eingegliedert. Evident wird dies bei der Wiedergabe des Worts serum: Das Wort wird in den deutschen Satz »Götter eilen mit Heilung herbei« integriert, als handle es sich dabei um eine Art Ablativ, auch wenn die lateinische Wortform eine solche Deutung in keiner Weise zulässt. Übersetzt man das Wort aber – wie hier geschehen – als »Heil=Serum«, dann legt die Semantik des Worts es jedoch durchaus nahe, es in dieser Weise in den Satz zu integrieren. An einer weiteren Stelle wird im Übersetzungsprozess die unterstellte Ausgangssprache ausgewechselt: Während die restlichen Wörter weiterhin als lateinische Wörter behandelt werden, wird das Wort sera zusätzlich auch durch die Perspektive des Italienischen interpretiert. Würde dieses Prinzip konsequent auch auf weitere Sprachen ausgedehnt, würde sich die Zahl der potenziellen Übersetzungen weiter multiplizieren. In beiden Fällen kommen typische Verfahren des wilden Übersetzens zur Anwendung. Dadurch werden zwei unterschiedliche deutschsprachige Versionen – man könnte auch sagen: Lesarten – des pseudolateinischen Satzes hervorgebracht. Um eine finale Fassung zu produzieren, werden diese übereinandergelegt. Es kommt nicht zur Selektion einer bestimmten Variante, vielmehr werden diese alle gleichberechtigt nebeneinandergestellt und miteinander kombiniert, sodass das volle Spektrum aller möglichen Übersetzungen in einen einzelnen Satz integriert wird: »Der Tagesgott eilt singend dem heilsamen Abend zu«. Diese Übersetzung soll als Resultat einer überschießenden Interpretation kritisiert werden, die im Textstück Bedeutungen zu erkennen glaubt, die darin gar nicht vorhanden sind. Es handelt sich dabei, so legt dies der Text nahe, um eine interpretative Fata Morgana, eine feinsinnige Überinterpretation, wie sie den Interpreten von Finnegans Wake ständig unterlaufe. Durch den Kunstgriff, diese Übersetzungsoperation als Rätsel zu präsentieren, kann die Bedeutung des Textfetzens eindeutig aufgelöst und geklärt werden. Erst dies macht es rhetorisch möglich, das interpretative Vorgehen bei der Lektüre des Wake satirisch zu verspotten. Beim Satz »dii currendum serum«, so die Pointe der Sequenz, handelt es sich um keinen sinnvollen lateinischen Ausdruck, den man dem Sinn nach übersetzen könnte. Vielmehr versteckt sich hinter diesem uralten ›Meidinger‹ ein deutscher Satz, der in lateinische Wörter gekleidet wurde und sich nach demselben Prinzip auch wieder entschlüsseln lässt: »Die Kuh rennt um’m See rum!«. Durch die vermeintlich absurde und allzu simple Auflösung der hermeneutischen Krux des lateinischen Satzes wird aber nicht Kritik am wilden Übersetzen per se geübt. Stattdessen wird durch die Wahl des Beispiels dabei das semantische Äquivalenzprinzip vollständig aufgegeben und ersetzt, indem der Satz als eine homophone Übersetzung von der deutschen in die lateinische Sprache entlarvt wird. Schmidts Selbstermächtigung als Interpret und Übersetzer des Wake stößt unter Übersetzerkollegen auf Widerstand. Dies zeigt sich an der teils massiv ein- 342 III Arno Schmidt gesetzten moralisierenden Sprechweise, die von der Kritik eingesetzt wird, um Schmidts Umgang mit Finnegans Wake zu beschreiben. Überliefert sind etwa die Protestbriefe Wolfgang Hildesheimers, selbst Übersetzer eines Wake-Kapitels, an die Darmstädter Akademie. Diese hatte das Buch Der Triton mit dem Sonnenschirm (1969)99, in dem 1969 verschiedene Joyce-Studien Arno Schmidts versammelt publiziert wurden, zum ›Buch des Monats‹ gekürt, was Hildesheimer, der Schmidts Übersetzungsbeispiele zu einer »Vulgärversion des Textes«100 erklärte, heftig kritisiert: Wenn ich mir Schmidts Synopsis dieses Kapitels betrachte, vergeht mir der Atem, ich frage mich, wie das möglich ist. Ich wäre jederzeit bereit, gegen ihn anzutreten, öffentlich, im Funk oder auch – warum nicht – in einer Akademieveranstaltung. Ein Duell: er darf die Waffe wählen, sagen wir 15 Zeilen Text, und ich werde versuchen, seinem Fagott ein paar andere Stimmen beizugeben.101 Zu einer ähnlichen Einschätzung kommt auch Friedhelm Rathjen, der behauptet, Schmidts Wake-Typoskript sei als Übersetzung kaum mehr als »ein Witz«.102 Es zeigt sich, wie der selbsterklärte Anspruch, eine ernst gemeinte Interpretation und Übersetzung von James Joyce’ Finnegans Wake zu liefern, mit den gesellschaftlichen Erwartungen an das interpretatorische und übersetzerische Ethos der Redlichkeit kollidiert, die an eine solche Tätigkeit gestellt werden. Gemessen an den Erwartungen, die an eine reguläre Übersetzung gestellt werden, ist Arno Schmidts Versuch, Finnegans Wake zu übersetzen, nicht nur quantitativ, bezogen auf die geringe Zahl an übersetzten Seiten, sondern auch qualitativ gescheitert. Es stellt sich damit die Frage, ob es eine andere Perspektive gibt, mit der die Konstellation angemessen erfasst werden kann. 3.3 D  as Wake-Typoskript als neuer, eigenständiger Text Es ist noch eine dritte Perspektive auf das Wake-Typoskript möglich, wie auch auf alle anderen Texte, die daraus entstanden sind. Diese Perspektive betrachtet den Text für sich allein, ohne ihn ins Verhältnis zu seiner Vorlage zu setzen. Damit fällt der Maßstab des anderen Texts weg. Die einzelnen Abschnitte des Wake-Typoskripts können damit als eigenständige Textfragmente für sich selbst untersucht werden, was es auch erlaubt, sie nach gänzlich anderen Kriterien zu bewerten. Insofern es 99 A. Schmidt 1969. 100 Hildesheimer 2006, 11. 101 Hildesheimer 2006, 13. 102 Rathjen 2010b, 127 (Neuabdruck von Rathjen 1991). 3 Die ›Übersetzung‹ von Finnegans Wake 343 sich bei der ›Übersetzung‹ um einen literarischen Text handelt, stellt sich die Frage nach dessen Poetizität. Auch Rathjen ist zum Schluss gekommen, es sei unzutreffend, den Text des Typoskripts als Übersetzung von Finnegans Wake zu charakterisieren.103 Nur wenn man einen neuen Text für sich und ohne Vergleich mit der Vorlage untersuche, gewännen dessen Qualitäten an Profil, während sie bei der Konfrontation mit dem Wake ihre Wirkung verlören, »weil sie dann naturgemäß doch wieder an übersetzerischen Forderungen gemessen werden, denen sie ja gerade nicht hinreichend genügen können.«104 Dabei kommt Rathjen zu einer genauso starken wie überraschenden These: Die Textproben aus Schmidts ›Triton‹-Essay und die zusätzlichen Proben, die sich in den Loseblattbeigaben zum Wake-Arbeitsexemplar finden, sind keine Joyce-Übersetzung, sondern eigenständige Schmidt-Texte – so eigenständig, daß ich von den autonomsten Texten sprechen möchte, die Schmidt jemals schrieb.105 Nach Rathjen ist dieser Text frei von außerliterarischen Referenzen und hat sich von der Wirklichkeitsabbildung emanzipiert, weil Sprache darin zu einem autonomen Agens werde.106 Während Schmidt in seinen anderen Texten letztlich immer einer realistischen »Abbild- und Konformitätsforderung« verpflichtet sei, sei dies hier nicht mehr gegeben.107 Die fehlende Übereinstimmung der einzelnen Abschnitte mit den jeweiligen Vorlagen sei kein Problem, da es sich »gar nicht um Übersetzungen« handle. Zugleich verschaffe die fehlende Konformität zur außertextlichen Objektwelt dem Text »Qualitäten«, die »in Schmidts Gesamtwerk ansonsten außerordentlich rar sind.«108 Dazu stellt Rathjen eine produktionsästhetische These, welche die Herausforderung zum Ausgang nimmt, einen Text ohne Gegenstand zu verfassen.109 Hier werde Finnegans Wake für Schmidt zum »Textgenerator«, der neue Texte entstehen lässt,110 weil er ein Arsenal von Wörtern darstelle, mit denen gespielt werden könne. Schmidt nehme also, so rekonstruiert es Rathjen, »Satz für 103 Rathjen 2010b, 131. 104 Rathjen 2010, 134. 105 Rathjen 2010b, 128. 106 Rathjen 2010, 131. 107 Rathjen 2010b, 128. Genau diese Dissoziierung setzt Rathjen mit den Poetiken der »vordersten Modernisten-Riege« gleich, gegen die Schmidt noch im Spätwerk die Etymtheorie setze, mit der »noch die verwegensten Textpartikel« als Abbildungen psychischer Realitäten gefasst werden könnten (128). 108 Rathjen 2010, 134. Auf diese Weise glaubt Rathjen, die »Ehre der Schmidtschen Pseudoübersetzungen gerettet« (134) zu haben. 109 Rathjen 2010b, 132. 110 Rathjen 2010b, 133. 344 III Arno Schmidt Satz in der gegebenen Abfolge, lässt sich zu jedem Wort ein möglichst abseitiges deutsches Wort einfallen und setzt diese deutschen Wörter hintereinander.«111 Rathjens Charakterisierung des Texts nennt diverse Phänomene, die für das wilde Übersetzen typisch sind, denn er folgt ebenfalls der Idee, dass die transformativen Prozesse, die anstelle der Übersetzungsarbeit stehen, textgenerativen Charakter haben. Das heißt, dass die Verfahren des wilden Übersetzens einen Mechanismus darstellen, der die Produktion von Texten ermöglicht, die sich nicht durch die Darstellung eines Gedankeninhalts strukturiert, sondern sich ganz aus der Orientierung an der Materialität der Sprache eines anderen Texts speist. Dadurch entstehen Texte, die über außergewöhnliche literarische Qualitäten verfügen. Allerdings wäre Rathjens Modell aus Sicht der Theorie des wilden Übersetzens in drei Aspekten anzupassen. Zunächst ist es unpräzise, den englischen Text von Finnegans Wake als »Textgenerator« für den entstehenden Text zu beschreiben. Diese Aufgabe wird von den spezifischen wilden Übersetzungsverfahren erfüllt, die bei der Transformation zum Einsatz kommen, während der Ausgangstext selbst nur das generative Material darstellt, das in diesem Prozess verarbeitet wird.112 Zweitens betont zwar auch Rathjen die Orientierung dieses Verfahrens am Ausgangstext, der Satz für Satz abgearbeitet wird, es fehlt aber in Rathjens Beschreibung die ausdrückliche Bezugnahme auf die sprachliche Materialität des Ausgangstexts, obwohl diese Aspekte das Vorgehen von Arno Schmidt, wie bereits gezeigt wurde, entscheidend geprägt haben. Schließlich verwendet Rathjen mit der Textautonomie, die er als Nichtkonformität des Texts mit außerliterarischen Referenten definiert, einen Begriff, der nicht dazu geeignet scheint, die konkreten Umstände des Wake-Typoskripts angemessen zu beschreiben, denn damit lassen sich die komplexen intertextuellen Verhältnisse nur unzureichend erfassen, die zwischen wilden Übersetzungen und ihren Vorlagen im Allgemeinen herrschen.113 111 Rathjen 2010, 132–133. 112 Dabei ist jedoch kaum zu bestreiten, dass ein Text wie Finnegans Wake ein Ausweichen auf alternative Übersetzungsverfahren begünstigt, da die spezifische Art des Umgangs mit Sprache im Wake nach wilden Übersetzungsverfahren verlangt. 113 Dabei verzichtet Rathjen darauf, konkrete Argumente für die Autonomie dieser Texte theoretisch zu formulieren. Vielmehr setzt er zur Gänze darauf, dass die verschiedenen, teils sehr langen Textbeispiele aus dem Wake-Typoskript selbst Evidenzmomente entfalten. Wenngleich Rathjen dies mit rhetorischen Fragen immer wieder suggeriert, sind diese Evidenzen nicht immer überzeugend. So fragt Rathjen 2010b, 124 am Ende des Eingangszitats, das FW-Ü 30–31 umfasst: »Ja, was ist das nun? Ist dieser Text Arno Schmidts eine Finnegans-Wake-Übersetzung?« Auch das zweite Zitat wird nicht nur mit dem Verweis auf die Evidenz des Beispiels selbst eingeleitet: »Und nun hören wir, zum Beweis der engen Verwandtschaft, dies« (Rathjen 2010b, 131), das Zitat wird auch erneut mit einer rhetorischen Frage beendet: »Erinnert das überhaupt an was? Jedenfalls nicht an Schmidts Forderung nach konformer Weltabbildung. Das war, natürlich, wieder ein kleiner Ausschnitt aus Schmidts Wake-Übersetzung« (Rathjen 2010b, 131). 3 Die ›Übersetzung‹ von Finnegans Wake 345 Um nachzuvollziehen, wie die Produkte der Finnegans Wake-Übersetzung für sich allein funktionieren, bietet es sich an, ein Textbeispiel genauer zu untersuchen, das auch Rathjen als Evidenz für seine Thesen anführt. Dabei zitiere ich direkt aus dem Typoskript und übernehme auch die Marginalien, da diese einen integrale Bestandteil des Texts darstellen: ................. die authentischste Fassung, der Dumlat*, man lese | die Schriften von Hofed=ben=Edar* nach, besagt, daß es sich also zutrug. Wir | vernehmen daselbst, wie es im Anfang geschah, daß – darin dem Kohl=Bauer Cincinnatus gleich – der große alte Gärtner* das Tageslicht baß nützte, unter seinem | Rotholzbaum* (Sequoia immer=gigantea), und der Sabbath=Nachmittag war schwül, gleichsam Chevy=Jagd=Vorabend**, |und er schritt, in paradiesischem Vor=Falls=Frieden, dem Pfluge nach, rüsselnd & rodend, im | Hinter=Garten von Mob= Haus, der altbekannten Seefahrer=Raststätte, als durch einen Läufer verkündet wurde, einem Mitglied des königlichen Hauses* habe es gefallen, draußen auf | der Landstraße zu halten, auf der ein Bummler von Fuchs= Männchen* seine Duftmarkierung abgesetzt hatte, ge- | folgt, gleichfalls im Schritttempo, von einer Koppel von Stöber=Hunde=Damen.* Indem | er über seiner offenbaren Vasallenpflicht als Lehnsmann des Königs* schlechthin Alles vergaß, | versäumte Humphrey oder Harold* sich nicht lange mit jochen & satteln; sondern stolperte hinaus, erhitzten Gesichts | wie er war, (sein Kopftuch,* sauren Schweißes voll, los' aus der Rocktasche), in Hast | den Vorhöfen der Herberge zu, in Topi*, Packgurt, Sonnenschal und | Plaid, weitbauschenden Knickerbockern,* Putties** und Planierungs=Fußwerk, schier zinnobern gerötet von | flagranti=duftendem Mergel, rüstig rasselnd mit Schlagbaum=Schlüsseln; so trug er mitten unter die Jagdgesellschaft, die Picken bei Fuß stand, eine hohe Stange herein, ob ihr zu schauen ein Blumentopf, erdwärts gekehrt, mit Umsicht befestigt. (FW 30:10–31:3) * (wenden :'Talmud') * ('Ben Edair'=kelt. Name von Kap Howth) = 2 1 * 2 Garten! =2 * (ab hier Doppelsinnigkeit beachten !)/**HCE; auch Eva & Austreibung aus dem Paradies *1 * John Peel Kreis ! *4 *1 *2 * Hut * Hut ! (ostindisch) * vgl. S. 404/ ** (ostind.: Gamaschen) Der Abschnitt, der allerersten Typoskriptseite des Wake-Konvoluts entnommen, beginnt mitten in einem Satz; die siebzehn Auslassungspunkte kennzeichnen den 346 III Arno Schmidt Text als Fragment. Dabei verweisen sie auf etwas, das im Text nicht manifest wird, darin aber unterschwellig vorhanden ist: Der Beginn des Satzes, der Beginn des Texts ist anderswo. Beim verbliebenen Satzrest handelt es sich um eine Quellenberufung auf einen fremden Text, den ›Dumlat‹ (oder ›Talmud‹), der die ›authentischste Fassung‹ der Gegebenheiten enthalte, die im Anschluss geschildert werden. Sowohl in seiner formalen Präsentation als auch in seinem Inhalt verweist der Text über sich hinaus. Er ist gerade nicht abgeschlossen, sondern markiert die Offenheit seiner Ränder offensiv. Durch diese ausdrückliche Verweistätigkeit auf andere Texte wird bereits in der allerersten Zeile des Wake-Typoskripts implizit die Bezogenheit dieses Texts auf einen anderen markiert; wodurch die Bedingungen der Textentstehung thematisiert werden. Dabei ist die Wahl genau dieses Anfangs besonders signifikant, da angesichts der spezifischen Bedingungen der Textproduktion mit ihren spezifischen Einschränkungen die Selektion eines bestimmten Textabschnitts eine der wenigen Entscheidungen ist, die gänzlich in der Verfügungsgewalt des Textproduzenten liegen. Sollte Textautonomie bedeuten, dass dabei der Text, und nichts als der Text selbst zählt, der in sich selbst abgeschlossen ist und seinen eigenen Gesetzen gehorcht, so markiert allein dieser Beginn, dass der Text sich gerade nicht als autonom präsentiert. Der Text selbst beginnt im folgenden Satz mit einer vergleichsweise konventionellen kleinen Erzählung. So werden zunächst sowohl Zeit (›im Anfang‹), als auch Ort (›unter dem Rotholzbaum‹) und Protagonist (›der große alte Gärtner‹) eingeführt. Dabei wird das Gattungsmodell der pastoralen Idylle evoziert, überblendet mit Anspielungen auf den Paradiesgarten der Genesis. Nach dieser Exposition kommt in einem zweiten Schritt gar so etwas wie eine Handlung in Gang: Ein Läufer verkündet, ein Mitglied des Königshauses sei auf der Landstraße, was den Gärtner in seiner Vasallenpflicht dazu anspornt, unverzüglich aufzubrechen, um sich mit seiner Standarte, einem an einer hohen Stange aufgehängten Blumentopf, der königlichen Jagdgesellschaft zu präsentieren. Zwischen diesen handlungstragenden Elementen finden sich in langen und verschachtelten, aber keinesfalls ungrammatischen Sätzen kleinere Zusätze, so unter anderem eine Beschreibung der verschiedenen Figuren auf der Straße und eine Aufzählung der ausgefallenen Kleidungsstücke des Gärtners. Insgesamt gibt es in diesem Textabschnitt nur weniges, was rätselhaft bliebe, und sich nicht im Kontext der jeweils geschilderten Konstellation sinnvoll eingliedern ließe.114 Auch finden sich immer wieder direkte 114 So bleibt zwar vielleicht unklar, was genau ein »Chevy=Jagd=Vorabend« (FW-Ü 30:14) oder eine Koppel »Stöber=Hunde=Damen« (FW-Ü 30:19) darstellen sollen, doch im Kontext wird absolut deutlich, dass es sich im ersten Fall um eine Zeitangabe, im zweiten aber um eine Gruppe von wandernden Tieren auf der Landstraße handeln muss. 3 Die ›Übersetzung‹ von Finnegans Wake 347 Referenzen auf Gegenstände außerhalb des Texts.115 Man kann also nicht nur eine in sich kohärente Szene rekonstruieren, sondern sogar eine rudimentäre narrative Sequenz. Es wird demnach eine in sich konsistente Fiktion etabliert, die dabei immer wieder über sich hinaus verweist. Gleichzeitig aber zeigt der Textabschnitt diverse Artefakte eines literarischen Produktionsprozesses, der keiner Norm konventionellen Erzählens entspricht. Im Falle des Wake sind es die langen Sätze in der Vorlage, die zu verfremdenden Effekten führen. Gerade in der deutschen Bearbeitung des Texts, die sich eng an die Struktur der Vorlage hält, führt dies dazu, dass die einzelnen Sätze mit einer Unzahl von Zusätzen und Ergänzungen überladen werden, die sie kaum zu tragen vermögen. Obwohl an keiner Stelle eklatante Verstöße gegen die Regeln der Grammatik festzustellen sind, werden die Grenzen dessen, was in einer Sprache gebräuchlich ist, weit ausgedehnt. So machen es die zahlreichen Hyperbata im deutschen Text, durch die Subjekt und Prädikat nicht selten weit auseinandergerissen werden, unmöglich, den Text linear zu lesen, da diese Lücken selbst bei schnellstem Lesen innerhalb der aktiven Aufmerksamkeitsspanne nicht geschlossen werden können. Das permanente Aufschieben der grammatischen und semantischen Auflösung führt zur Orientierungslosigkeit. Das Lesen dieses Texts bringt eine Maulwurfperspektive mit sich, die es erschwert, einen Überblick zu gewinnen, und sei es auch nur über einen einzelnen Satz. Dadurch erzwingt der Text einen Wechsel im Lesemodus: Statt der linearen Lektüre ist eine Vogelperspektive nötig, in der die einzelnen Satzglieder wie in einem Puzzle analysiert und zusammengefügt werden können. In gewissen Passagen führt der Transformationsprozess dazu, dass Sprache in ein freies Flottieren kommt, ohne dass es noch möglich wäre, feste Referenten zu etablieren. Dadurch wird der Text kryptisch, wobei die obscuritas dieser Abschnitte vermutlich aber das Resultat seiner unentwirrbaren Bezogenheit auf die Vorlage ist. Gewisse Elemente im Text lassen sich nur angemessen verstehen, wenn man den Text von Finnegans Wake als Referenz danebenlegt. Daher stellt sich die Frage, ob das Typoskript für sich allein stehen kann, wenn viele Elemente darin Reaktionen auf interpretative Probleme darstellen, die darin zwar bearbeitet, aber gar nicht mehr wiederholt werden. Evident wird dies am Beispiel der Kommentare in der rechten Textspalte. Die Passagen lassen sich ohne das Wissen, worauf sie im Ausgangstext reagieren, kaum sinnvoll lesen. Dies wird am folgenden Beispiel klar, in dem die Bügelfalte einer Hose wie folgt beschrieben wird: 115 Etwa die gelehrte Anspielung auf L. Quinctius Cincinnatus, der sein Amt als römischer Diktator frühzeitig niederlegte, um sich um seinen Acker zu kümmern (Liv., 3,27–28), oder der Verweis auf den wissenschaftlichen Namen der Sequoia gigantea. 348 III Arno Schmidt Wie absolut nnnninng * zum Küssen ! **), wie sie über den Knöchel fiel […] (FW-Ü 404:32) Das Wort vor dem Asterisk wurde von Schmidt mit schwarzem Stift durchgestrichen und ist nicht mehr zu entziffern. Zu beiden Stellen, die mit einem Asterisk markiert sind, gibt es je eine Anmerkung, die jeweils eine mögliche Lesart oder Variante zur jeweiligen Stelle vorschlagen: »* V: Ameise ! / ** Persse ! und grob«. In welchem Verhältnis »Ameise« zum durchgestrichenen Wort – oder vielleicht auch zum Wort »absolut« steht, ist aufgrund der im Typoskript vorhandenen Informationen unklar. Auch der zweite Kommentar ist zur Erläuterung von »Küssen« allein weitgehend nutzlos. Ohne Rückgriff auf das Wissen, das nur eine eingehende Beschäftigung mit dem (englischen) Text von Finnegans Wake bieten kann, ist es nicht einmal klar, ob es sich bei »Persse« tatsächlich um ein Wort handelt. Nur wer die Ballade von Persse O’Reilly schon kennt, einen Song aus dem ersten Teil des Wake (FW 44–47), die von Gerüchten über eine angebliche Transgression von H. C. E berichtet, kann das Wort deuten; der Bezug zur konkreten Stelle bleibt allerdings weiter unklar. Ein wenig Aufklärung bringt tatsächlich erst die Konsultation der englischen Parallelstelle: »how amsolookly kersse!«. Die ›Ameise‹ steht mit dem ersten Wort zumindest in einem lockeren paronomastischen Zusammenhang; die Variante ›grob‹ ergibt sich daraus, dass Schmidt in ›kersse‹ das englische Wort ›coarse‹ entdeckt hat. Neben Persse, den Schmidt hinter dem Wort ebenfalls entdeckt hat, findet sich im Wake auch eine Geschichte von einem Schneider namens ›Kersse‹ (FW 311), der mit seinem Namensvetter ›Persse‹ jedoch große Ähnlichkeiten hat.116 Es zeigt sich erneut, wie locker der Bezug zwischen dem wortspielerischen englischen Text und der deutschen Lesbarmachung ist: Während es nachvollziehbar ist, ›armsolootely‹ an der vorliegenden Stelle als ›absolutely‹ zu lesen, stellt sich die Frage, wie genau ›kersse‹ mit den ›Küssen‹ in Verbindung steht. Die Unverständlichkeit des Texts wird mithin potenziert, wenn der Bezug zur Vorlage verloren geht. Das bedeutet, dass die englischen Wortspiele in der deutschen Übertragung zumindest in der Latenz weiter erhalten bleiben. Allein die fremden Wörter, die sich gar nicht mehr im Text befinden, sind in der Lage, die einzelnen Wörter darin wieder zusammenzuführen. Hinter dem Text des Wake-Typoskripts liegt ein zweiter Text, der zwar verborgen ist, aber immer wieder durchscheint, und damit dem Text eine dahinterliegende zweite, nur virtuelle Ebene der Bedeutung stiftet. Um damit die Kritik an der Sprechweise von der Textautonomie, wie sie laut Rathjen durch Pseudoübersetzungen wie jene des Wake-Typoskripts entsteht, aus 116 Tindall 1959, 190: »it is likely that Kersse is Persse O’Reilly, who, as a Scandinavian invader, is also a sailor. Sailor and tailor are twins of a sort«. 3 Die ›Übersetzung‹ von Finnegans Wake 349 der Perspektive des wilden Übersetzens zu verallgemeinern: Die Produkte dieses Transformationsprozesses genügen in zwei unterschiedlichen Hinsichten nicht dem Ideal eines autonomen Texts. Erstens sind sie, obwohl sie für sich allein gelesen werden können, durchwegs und aufs engste mit den Texten verknüpft, aus denen sie entstanden sind. Zweitens aber ist es zwar möglich, dass die Texte, die dabei entstehen, sich durch eine Textualität auszeichnen, die keine Konformität mit der außertextuellen Wirklichkeit anstrebt. Dies ist jedoch kein zwingendes Produkt des Transformationsprozesses. Der Alternativvorschlag der Theorie des wilden Übersetzens ist es, die spezifische sprachliche Qualität der Texte, die durch dieses Verfahren zustande kommen, nicht über deren Konformität mit einem (außerliterarischen) Referenzgegenstand zu fassen, sondern über die Art und Weise, durch die der Text von einem Element auf das nächste kommt und dabei ein Wort an das nächste, einen Satz an den nächsten reiht. Während die interne Struktur des Texts sonst durch die an einer Handlungslogik orientierte Gesetzmäßigkeit der Narration oder durch die logischen Zusammenhänge einer Argumentation zustande kommt, ist es im Fall des wilden Übersetzens allein die Reihenfolge der fremden sprachlichen Zeichen in der Vorlage, die das Schreiben gliedert. In dieser Hinsicht handelt es sich bei wilden Übersetzungen um Texte, die andere Texte zum Gegenstand haben, während die Darstellung einer Situation oder einer Handlung immer erst in zweiter Linie, das heißt, nur vermittelst des Bezugstexts geschieht. Damit stellt sich auch hier die Frage nach der Intentionalität der Abweichung im Übersetzungsprozess. Soll das wilde Übersetzen als eine gezielte Abweichung und Subvertierung der Regeln des regulären Übersetzens konzipiert werden, dann wäre auch in diesem Fall vorausgesetzt, dass Arno Schmidt spätestens während der Arbeit am Wake-Typoskript neue Absichten mit dem Text hatte. Mit Blick auf die Charakterisierung des Texts als einer Lesbarmachung scheint dies aber nicht der Fall zu sein. Zwar kommen gewisse Verfahren der Übersetzung, die der wilden Sorte zuzuordnen sind, bei der Entschlüsselung einzelner Wortspiele in Finnegans Wake zum Einsatz und werden von Schmidt theoretisch reflektiert. Doch dieses Vorgehen wird auf ein hermeneutisches Ziel hin funktionalisiert, die Rekonstruktion der Textbedeutung. Zwar findet im Zuge dieser Auseinandersetzung eine Selbstermächtigung gegenüber dem Ausgangstext statt, aber ohne dies direkt fürs Schreiben eines eigenen Texts zu benutzen. Mit Blick auf das Wake-Typoskript allein ist kaum von einer wilden Übersetzung als einer gezielten Wendung gegen die Regeln des Übersetzens zu sprechen. Nachdem die Arbeit am Typoskript längst abgeschlossen war und sich für Schmidt die Aussicht zerschlagen hatte, die Übersetzungsrechte zu erhalten oder eine monografische Joyce-Publikation veröffentlichen zu können, kommt es zu einer Zweit- 350 III Arno Schmidt verwertung, insofern einzelne Formulierungen und Abschnitte aus der Wake-Übersetzung in verschiedene Texte der Ländlichen Erzählungen eingebaut wurden.117 In verschiedene Texte werden systematisch einzelne Übersetzungssplitter eingebaut, insgesamt gibt es in sieben der zehn Erzählungen mehr als ein Dutzend Formulierungen, die dem Wake-Typoskript entstammen.118 Diese zeichnen sich, im Vergleich zu den Abschnitten, die sie umgeben, durch spezifische stilistische Eigenheiten aus, die in diesen Erzählungen unterschiedlichen Funktionen dienen. Sie werden dazu eingesetzt, die innere Wahrnehmung der Welt durch die Protagonisten in verdichteter und sprachlich überraschender Weise darzustellen. Diese Neukontextualisierung von Textabschnitten aus dem Wake-Typoskript impliziert eine Umdeutung. Ganz egal, was zuvor deren Status war: An ihrer neuen Stelle handelt es sich bei diesen Sätzen um Literatur. Und so wird die fragwürdige ›Übersetzung‹ von Finnegans Wake einer neuen Aufgabe zugeführt. Wie diese literarische Weiterverwendung von Text aus dem Wake-Typoskript in den Ländlichen Erzählungen umgesetzt wird, soll exemplarisch an einem Beispiel aus der Erzählung Kundisches Geschirr aufgezeigt werden. Rathjen beschränkt sich in seinen Aufsätzen weitgehend darauf, die einzelnen Stellen in den Ländlichen Erzählungen, in denen sich Material aus dem Wake findet, knapp zu verzeichnen und sie mit wenigen Worten zu kommentieren. Das vorliegende Beispiel beschreibt er als die »längste und vielleicht raffinierteste Übernahme«, die durch eine »komprimierte und variierte Auslese« von Textabschnitten einer einzelnen Typoskriptseite (FW-Ü 244) zustande gekommen ist.119 Diese Passage ist innerhalb der Erzählung Kundisches Geschirr prominent platziert, ganz zu Beginn des Texts. Die Erzählung beginnt damit, dass sich der Protagonist im allerfrühsten Morgengrauen auf die Veranda setzt und die unmittelbare Umgebung des Hauses wahrzunehmen beginnt: 117 Rathjen 2015, 24: »Aber noch eine letzte Verwertungsmöglichkeit fällt Schmidt ein, und wieder kommen die ›Ländlichen Erzählungen‹ ins Spiel. Unter den erhaltenen Zetteln zu Schmidts ›Caliban über Setebos‹ ist dieser: ›Idee / in alle Geschichten etwas von der Joyce=Übers. zu mixen!‹. Wann Schmidt diese Idee notiert hat, ist ungewiss«. Überblick über die übernommenen Stellen: Rathjen 2015, 24–26. 118 Rathjen 2015, 24. 119 Rathjen 2015, 25, der die Stelle als Rückverweis auf Schmidts Übersetzungsarbeit deutet: »›Kundisches Geschirr‹ verweist also planmäßig zurück auf jene Situation, in der Schmidt seine Übersetzungsarbeit anging«; vgl. zur Stelle und dem Montageprinzip auch Rathjen 2019, 116, der betont, dass Schmidt erst jetzt den »enormen Witz der Textur von Finnegans Wake […] in seiner ganzen Dimension zu erkennen und anzuerkennen« bereit sei und die »Zitatmontage den Wechsel zu jenem mehrsprachigen und mehrstimmigen Schreiben ankündigt, das fürs Spätwerk prägend wird« (Rathjen 2019, 116). 3 Die ›Übersetzung‹ von Finnegans Wake 351 Ruhe faltet die Fluren aus: Stillst’n Dank, 1 τ! (Das muß ich übersetzen? ‹1 τ = ein Tau = a dew = Adieu›: Sag’ lang, Frau Nacht! Da Lord Sun die Augen öffnet. So viele, uns wunderlich untertane Buchstaben.) Und Weizenkätzchen harren atemlos. Kleinstes plappert. (BA 1/3, 371) Dieser Text ist größtenteils aus verschiedenen knappen Fragmenten zusammengesetzt, die alle von einer einzigen Seite des Wake-Typoskripts (FW-Ü 244) stammen. Entnommen wurden dieser Seite die folgenden Abschnitte, denen jeweils die englischen Entsprechungen beigestellt werden: 1. »Kleinstes plappert !« – »Tiny tattling!« (FW 244:1) 2. »Und Weizenkätzchen harren atemlos.« – »And wheaten bells bide breathless« (FW 244:22) 3. »Sag lang, mein Himmel !« – »Say long, scielo!« (FW 244:25) 4. »Und Ruhe faltet die Fluren ein. Stillst’n Dank. Adieu *« – »Quiet takes back her folded fields. Tranquille thanks. Adew.« (FW-Ü 244:28–29) 5. »Da Lord Leu* die Augen geschlossen hält.« – »As Lord the Laohun is sheutseuyes.« (FW 244:31–32) Bei der Erstellung des neuen Texts bedient sich Arno Schmidt einer Art Collagetechnik: Nach ihrer Selektion und Transformation werden die Textfetzen durch Umstellung und Neukombination in eine andere Ordnung gebracht (in der Reihenfolge 4–3–5–2–1 in der obigen Zählung). Das Vorgehen gleich dabei in vielen Aspekten dem intertextuellen Prinzip des Centos, insofern durch das textuelle Neuarrangement der einzelnen Elemente ein neuer Textsinn entsteht, der eine kohärente Lektüre des ganzen Abschnittes möglich macht. Dazu werden allerdings kleine inhaltliche Eingriffe in den Text vorgenommen: Dabei werden Nacht und Sonne in den Text integriert, indem »mein Himmel« durch »Frau Nacht« und »Lord Leu« durch »Lord Sun« ersetzt werden; beides ist aber im Ausgangstext bereits angelegt, schwebt doch am »scielo« die »Selene«, während sich hinter »Lord the Laohun« mit seinen »shutseuyes« tatsächlich die Sonne verbergen könnte. Eine letzte Änderung deutet die ursprüngliche Nachtszene zum Tagesanbruch um: die geschlossenen Augen der Sonne öffnen sich. Insgesamt sind die Eingriffe in den Text gering; es wird weitgehend mit dem beim Übersetzungsprozess generierten Sprachmaterial operiert. Im Abschnitt davor wird geschildert, wie der Protagonist, selbst Übersetzer,120 sich frühmorgens an die Arbeit setzt und dabei beobachtet, wie das Morgengrauen 120 Dass der Ich-Erzähler von Kundisches Geschirr ein Übersetzer ist, wird aus den Gesprächen und Unterhaltungen deutlich, so in BA I/3, 374: »›Sie übersetzen–‹ fing sie an; ›Onkel Martin hat die Bücher ja alle. […]‹« und erneut in BA I/3, 390: »Und hielt es nur=mir, dem Übersetzer, hin: ?!«. 352 III Arno Schmidt anbricht: Es ist die versprachlichte Perzeption des Übersetzers, die aus dem übersetzten Wake-Material zusammengestellt wird und sich in einer schnellen, mehrsprachigen Kette von Übersetzungen der sinnlich wahrgenommenen Dinge äußert: Der morgendliche »Tau« verabschiedet die »Nacht«, während die aufgehende Sonne »ihre Augen öffnet« und die Natur, eben noch in »Ruhe« erstarrt, langsam in Bewegung gerät. Die Passage fügt sich nahtlos in den narrativen Kontext des Texts ein. Nur in ihrer sprachlichen Faktur unterscheidet sie sich von ihrer Umgebung. In den ersten Worten des Abschnitts wird der Übersetzungsprozess auch als solcher explizit benannt. Es handelt sich dabei nicht nur um eine Thematisierung des textinternen Übersetzungsprozesses, sondern auch um eine metapoetologische Markierung der tatsächlichen Bedingungen, unter denen der Text dieses Abschnitts entstanden ist. Gleichzeitig geschieht dies auch in der Performanz der Inszenierung: Es handelt sich dabei um eine textinterne Übersetzungsbewegung, die aus zwei kryptischen Zeichen über eine kurze Reihe von Transformationen durch mehrere Sprachen hindurch eine kleine poetische Erkenntnis über die erzählte Welt gewinnt und sogleich entfaltet: Der Tau, der sich frühmorgens auf ruhigen Fluren niederschlägt, ist das Zeichen des Abschieds von der personifizierten Nacht. Während die einzelnen Übersetzungen von der Schrift in die Sprache und über die Sprachgrenzen hinweg die Progression des Gedankens ermöglicht, finden sich die semantischen Kippstellen in den einzelnen Wörtern selbst. Das Prinzip der Übersetzung, das die zusammengestellten Textstücke erst hervorgebracht hat, wird in selbstreferenzieller Weise auf sich selbst angewendet. Der Text beginnt, sich selbst zu übersetzen, und geht dabei über das vorgefundene Material hinaus. Er wird in der Transformation schöpferisch, indem er das Prinzip der Übersetzung von den sprachlichen Zeichensystemen in die Grafie überträgt, und die Grenze zwischen den Schriften überwindet: »1 τ«. Die arabische Ziffer 1 und der griechische Buchstabe Tau werden dabei gewissermaßen zu einem kryptischen Symbol der ganzen Übersetzungskonstellation, die sich darauf aufbaut; sie repräsentieren in sich das semantische Potenzial, das durch den anschließenden Übersetzungsprozess aufgefaltet werden kann. Es lohnt sich, die Funktionsweise dieser inszenierten Übersetzung des Texts genauer zu studieren. So ist »ein Tau« zunächst die deutschsprachige Vokalisierung der arabischen Ziffer und des griechischen Buchstabens. Was in abstrakter Weise geschrieben stand, wird in die Lautung der deutschen Sprache übersetzt. Diesem Ausdruck wohnt, anders als den beiden Schriftzeichen, eine neue semantische Polyvalenz inne, da Tau nicht nur einen griechischen Buchstaben, sondern auch Seil und kondensierten Niederschlag bezeichnet. Alle drei Lesarten sind darin gleichwertig, die Selektion einer davon wird erst durch die nächste Übersetzung ins Englische festgelegt. Und obwohl das Wort in beiden Sprachen eigentlich nicht zählbar ist, wird im Zuge der Transformation festgelegt, dass es sich dabei um die Tröpfchen des Morgentaus handelt. Durch Paronomasie aber wird das englische 3 Die ›Übersetzung‹ von Finnegans Wake 353 Wort, mitsamt seinem Artikel, ein weiteres Mal in seiner Bedeutung umgekippt. Es resultiert, noch immer in britischer Aussprache, der französische Abschiedsgruß. Dieses Adieu wird jedoch, nach dem abschließenden Doppelpunkt, zum Abschied an die Nacht gerichtet. Es ist der englische Abschiedsgruß ›say long‹, aus dem die Formel »Sag’ lang« ihre Bedeutung zieht. Die Mehrsprachigkeit der Zeichenkonstellation, die im Wake-Typoskript getilgt wurde, wird in diesem literarischen Kontext wieder aufs Neue in den Text hineingebracht. Die Elemente in diesem vielgliedrigen sprachlichen Gleichungssystem haben ihren Ursprung allesamt im Übersetzungsprozess an Finnegans Wake. Es handelt sich dabei aber nicht um Produkte, die dem endgültigen Haupttext des Wake-Typoskripts entstammen. Ganz im Gegenteil verkörpern sie unterschiedliche Stufen des wilden Übersetzungsprozesses. Die verschiedenen Elemente im Paradigma der unterschiedlichen Übersetzungsschritte kommen in diesem Text nebeneinanderzustehen. An der Wurzel der Kette steht dabei ein einzelnes Wortspiel aus Finnegans Wake, dessen Potenzial in dieser Passage zu seiner Gänze aufgefaltet wird und das als Fluchtpunkt bis in den vorliegenden Text hineinwirkt, obwohl es darin selbst gar nicht vorhanden ist: Es ist das Wort »Adew« (FW 224:29). Im Wake-Manuskript findet sich dazu die Übersetzung als Abschiedsgruß: »Adieu«; in den Marginalien hingegen wird dazu als zweite Lesart »Oh, Tau« verzeichnet, wobei das ›O‹ handschriftlich über ein getipptes ›A‹ geschrieben ist. Hierin versteckt sich eine weitere Lesart, in der das ›A‹ nicht als unbestimmter Artikel, sondern als Interjektion aufgefasst wird. Diese Umdeutung des englischen Worts aber macht den letzten Schritt der vorliegenden Übersetzungskette erst möglich. Denn während diese Formen eins zu eins aus den verschiedenen Produktionsstufen der Arbeit an Finnegans Wake entnommen wurden, ist der allererste Schritt in der Kette, der Aufhänger der ganzen Konstellation, eine spezifische Ergänzung für diesen Text. Dabei wird das semiotische Spektrum an Zeichenordnungen innerhalb der Übersetzung entscheidend erweitert, insofern die interlinguale Übersetzung um die Transformation zwischen unterschiedlichen Schriftsystemen ergänzt wird. Dadurch wird die gesamte Konstellation weiter in Richtung der Anagrammatik geführt. Auch diese Buchstäblichkeit der wahrgenommenen Welt wird im Text ausdrücklich thematisiert, in einer seltsamen, zwischen den einzelnen Übersetzungsfragmenten eingefügten Bemerkung: »So viele, uns wunderlich untertane Buchstaben.« (BA 1/3, 371) Liest man den Abschnitt im sensus literalis als eine Beschreibung einer frühmorgendlichen ländlichen Szenerie, so wirkt die Bemerkung merkwürdig und fehl am Platz. Viel besser lassen sich diese Worte als Kommentar auf den sprachlichen Transformationsprozess verstehen, durch den der vorliegende Text entstanden ist: Die Buchstaben – und damit stellvertretend auch: die Sprache – unterstehen in dieser Vision ganz der Verfügungsgewalt des Schreibenden. Wider Erwarten sind 354 III Arno Schmidt sie, unter allen möglichen Kombinationen, die in diesem Prozess denkbar wären, genau in jene Konfiguration gefallen, die an dieser Stelle passt. Die Widerständigkeit der Sprache in ihrer Eigengesetzlichkeit, die dieses geglückte Resultat zu einer wunderlichen Überraschung macht, wird anerkannt. Nur weil es sich nicht von selbst versteht, dass die gegebenen Buchstaben so zueinander fallen, dass eine kohärente Schilderung entsteht, ist der Ausruf hier angebracht. Eine direkte Wiedergabe der Wirklichkeit wird damit nicht gegeben. Vielmehr ist es die Arbeit in der Sprache, die Transformation und Kombination gegebener Buchstaben, die das generative Moment dieser Episode ist. Dass daraus eine in sich kohärente Schilderung entsteht, die sich im Kontext perfekt einfügt, ist erst ein sekundärer Effekt. Arno Schmidts Auseinandersetzung mit Finnegans Wake und sein Versuch einer Übersetzung dieses Texts ist aus der Perspektive einer Theorie des wilden Übersetzens absolut faszinierend. Dies weniger, weil es sich beim Typoskript selbst um eine ausgewachsene wilde Übersetzung handelt, obwohl sich verschiedene Abschnitte in den Kommentaren, ausmachen ließen, die sich entsprechender Verfahren bedienen. Vielmehr war es möglich, das Wildwerden der Übersetzung systematisch zu rekonstruieren. Man kann dem Autor und Übersetzer Schmidt regelrecht dabei zuschauen, wie er im Zuge der scheiternden Übersetzung das poetische Potenzial dieser Schreibweise entdeckt und in den Ländlichen Erzäh­ lungen zum ersten Mal funktionalisiert. Bei diesem kleinen Abschnitt handelt es sich tatsächlich um eine wilde Übersetzung, also um ein Stück Text, das durch die Anwendung einer Reihe von Verfahren, die dem Übersetzungsprozess entnommen wurden, aus einem anderen, fremdsprachigen Text entstanden ist. Was wichtiger ist: Der Text weiß darum und stellt dieses Wissen ganz ausdrücklich dar. Die wilde Übersetzung ist von Beginn weg selbstreflexiv. Thematisiert wird die Entdeckung des poetischen Potenzials von falsch übersetzten Texten. Was bislang weitgehend zufällig geschehen ist, wird in der Folge zu einem eigentlichen Prinzip in der literarischen Produktion Arno Schmidts werden. Die Verfahren, die im Zuge der Arbeit an Finnegans Wake entdeckt wurden, werden für die Arbeit an Zettel’s Traum für den genuin literarischen Gebrauch operationalisiert. Gleichzeitig werden sie mit fragwürdigen psychoanalytischen Theoremen autorisiert, um als sogenannte Etymtheorie für ein realistisches Erzählen eingesetzt zu werden. In dieser Hinsicht spielt die Wake-Übersetzung für die Frage der Genese des wilden Übersetzens in Schmidts Werk eine entscheidende Rolle.
https://openalex.org/W3159940469
https://jprs.gov.iq/index.php/jprs/article/download/236/209
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Effect of CO2 phase on its water displacements in a sandstone core sample: experimental study
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No.19 Journal of Petroleum Research & Studies (JPR&S) Effect of CO2 phase on its water displacements in a sandstone core sample: experimental study ﺗﺄﺛﻴﺮ ﻁﻮﺭ ﺛﺎﻧﻲ ﻏﺎﺯ ﺍﻭﻛﺴﻴﺪ ﺍﻟﻜﺎﺭﺑﻮﻥ ﻋﻠﻰ ﺇﺯﺍﺣﺘﻪ ﻟﻠﻤﺎء ﻣﻦ ﻧﻤﻮﺫﺝ ﺭﻣﻠﻲ : ﺩﺭﺍﺳﺔ ﻣﺨﺒﺮﻳﺔ Ebraheam Al-Zaidi*, Xianfeng Fan** *Institute for Materials and Processes, School of Engineering, The University of Edinburgh, King’s Buildings, Mayfield Road, Edinburgh, EH9 3JL, United Kingdom **Corresponding author. Tel.: +44 0 131 6505678; fax: +44 0131 6506551. E-mail address: x.fan@ed.ac.uk (X. Fan). No.19 Journal of Petroleum Research & Studies (JPR&S) Effect of CO2 phase on its water displacements in a sandstone core sample: experimental study ﺗﺄﺛﻴﺮ ﻁﻮﺭ ﺛﺎﻧﻲ ﻏﺎﺯ ﺍﻭﻛﺴﻴﺪ ﺍﻟﻜﺎﺭﺑﻮﻥ ﻋﻠﻰ ﺇﺯﺍﺣﺘﻪ ﻟﻠﻤﺎء ﻣﻦ ﻧﻤﻮﺫﺝ ﺭﻣﻠﻲ : ﺩﺭﺍﺳﺔ ﻣﺨﺒﺮﻳﺔ Ebraheam Al-Zaidi*, Xianfeng Fan** *Institute for Materials and Processes, School of Engineering, The University of Edinburgh, King’s Buildings, Mayfield Road, Edinburgh, EH9 3JL, United Kingdom **Corresponding author. Tel.: +44 0 131 6505678; fax: +44 0131 6506551. E-mail address: x.fan@ed.ac.uk (X. Fan). No.19 Journal of Petroleum Research & Studies (JPR&S) Effect of CO2 phase on its water displacements in a sandstone core sample: experimental study ﺗﺄﺛﻴﺮ ﻁﻮﺭ ﺛﺎﻧﻲ ﻏﺎﺯ ﺍﻭﻛﺴﻴﺪ ﺍﻟﻜﺎﺭﺑﻮﻥ ﻋﻠﻰ ﺇﺯﺍﺣﺘﻪ ﻟﻠﻤﺎء ﻣﻦ ﻧﻤﻮﺫﺝ ﺭﻣﻠﻲ : ﺩﺭﺍﺳﺔ ﻣﺨﺒﺮﻳﺔ Ebraheam Al-Zaidi*, Xianfeng Fan** *Institute for Materials and Processes, School of Engineering, The University of Edinburgh, King’s Buildings, Mayfield Road, Edinburgh, EH9 3JL, United Kingdom **Corresponding author. Tel.: +44 0 131 6505678; fax: +44 0131 6506551. E-mail address: x.fan@ed.ac.uk (X. Fan). No.19 Journal of Petroleum Research & Studies (JPR&S) Introduction 1 CO2 capture and storage (CCS) is considered to be one of the promising techniques to reduce CO2 emissions to the atmosphere. The captured CO2 is stored into deep saline aquifers, depleted oil and gas reservoirs [1], or unminable coal beds [2, 3]. The injected CO2 can also be utilized as a working fluid to enhance hydrocarbon recovery from oil and gas reservoirs, to enhance methane production from coal beds, or to extract geothermal heat from subsurface formations [2, 4]. In these subsurface formations, the injected CO2 can exist in gas, liquid or supercritical phase as shown in Fig. (1) [5-7]. CO2 capture and storage (CCS) is considered to be one of the promising techniques to reduce CO2 emissions to the atmosphere. The captured CO2 is stored into deep saline aquifers, depleted oil and gas reservoirs [1], or unminable coal beds [2, 3]. The injected CO2 can also be utilized as a working fluid to enhance hydrocarbon recovery from oil and gas reservoirs, to enhance methane production from coal beds, or to extract geothermal heat from subsurface formations [2, 4]. In these subsurface formations, the injected CO2 can exist in gas, liquid or supercritical phase as shown in Fig. (1) [5-7]. CO2 phase has a significant impact on its wettability, and the interactions between CO2, reservoir rock and the fluids in reservoir pore space. For example, the supercritical CO2 has an ability higher than gas and liquid CO2 to alter reservoir rocks towards less water-wetting state [8, 9]. An abrupt change in CO2 phase can result in a significant change in its viscosity and density [3, 10]. Therefore, the change in CO2 phase might have a significant impact on the differential pressure, entrance pressure, CO2 injection rate, CO2 displacement rate, CO2 migration, and finally the stability of sored CO2 and the efficiency of enhanced oil and gas recovery [5, 11]. CO2 phase has a significant impact on its wettability, and the interactions between CO2, reservoir rock and the fluids in reservoir pore space. For example, the supercritical CO2 has an ability higher than gas and liquid CO2 to alter reservoir rocks towards less water-wetting state [8, 9]. An abrupt change in CO2 phase can result in a significant change in its viscosity and density [3, 10]. Abstract CO2 capture and storage have been considered as a key strategy to tackle CO2 high concentrations in the atmosphere. The captured CO2 is injected into deep saline aquifers, depleted hydrocarbon reservoirs and coal beds as gas, liquid, and/or supercritical phase. The CO2 phase may affect its injection, migration, and displacement efficiency. Research work on CO2 storage has mainly focused on the trapping mechanism, risk assessment, storage site selection, etc. However, CO2 phase effect on its injection and displacement efficiency has largely been neglected. In this paper, experimental work was designed to investigate the impact of CO2 phase on the pressure and production profiles as the experimental pressure increases. The results show that CO2 phase significantly affects the differential pressure profile, relative permeability of CO2, and residual water saturation in a sandstone core sample. The differential pressure profiles of gaseous CO2 and supercritical CO2 phases were significantly different from that of liquid CO2 phase, particularly before the CO2 breakthrough. The increase in the experimental pressure caused an increase in the differential pressure profile of the sub critical CO2 phases (gaseous and liquid CO2) but a reduction in that of the supercritical phase. The relative permeabilities of the three CO2 phases were in the range of 11-21 % while the residual water saturations (Swr) were in the range of 36 to 42 %. In general, the relative permeabilities of both gaseous and supercritical CO2 phases are quite close. The relative permeabilities of liquid CO2 phase are higher. The increase in pressure caused an increase in the relative permeability and a decline in the Swr. The scale of the change depends on CO2 phase. Thus, our results reveal the high impact of CO2 phase on its injection, and displacements efficiency. E 76 No.19 (JPR&S) sandstones, Tako sandstone, Bentheimer sandstone, Rothbach sandstone [4, 5, 7, 13-25]; [26, 27]. sandstones, Tako sandstone, Bentheimer sandstone, Rothbach sandstone [4, 5, 7, 13-25]; [26, 27]. However, the extensive research has been focused on various aspects of supercritical CO2. For example, Herring et al. investigated the capillary pressure-saturation for supercritical CO2 (scCO2) and brine at 37.5 0C and 83 bars [13]. Saeedi et al. [25] investigated scCO2-brine displacements in different sandstone samples with the emphasis on the effect of cyclic CO2-brine on differential pressure and saturation profiles. Chang et al. [28] conducted both drainage and imbibition CO2-core flooding of supercritical CO2 and water on low permeability sandstone core samples under a pressure higher than 80 bars and at a temperature of 40 oC to study the dynamic drainage process of water by supercritical CO2. To the authors’ best knowledge, there is no such investigations into the effect of CO2 pressure on the differential pressure profile and production performance as a function of CO2 phase. In this paper, laboratory dynamic CO2-water drainage experiments were performed to investigate the impact of CO2 pressure on the differential pressure profile, relative permeability of CO2, and residual water saturation. The drainage floodings have been conducted injecting pure gaseous CO2, liquid and supercritical CO2 phase into the deionised water saturated core sample. The results would provide important insights about the impact of CO2 phase on its injectivity, water or oil production rate, CO2-water displacement and CO2 migration in a sandstone reservoir. Introduction 1 Therefore, the change in CO2 phase might have a significant impact on the differential pressure, entrance pressure, CO2 injection rate, CO2 displacement rate, CO2 migration, and finally the stability of sored CO2 and the efficiency of enhanced oil and gas recovery [5, 11]. Fig. (1) The pressure and temperature ranges at which saline aquifers are found underground [12]. ressure and temperature ranges at which saline aquifers are found underground [12]. Fig. (1) The pressure and temperature ranges at which saline aquifers are found undergr Extensive experimental and numerical research work has been designed to investigate CO2 wetting and interfacial tensions under different pressure and temperature, relative permeability, capillary pressure- saturation, the impact of porosity heterogeneity on CO2 migration and injection, CO2 level and distribution, the sealing efficiency of caprocks, the effect of viscous stability on CO2-brine flood front during immiscible displacements, and the optimization of CO2 injection to maximize both CO2 storage and enhance oil recovery (EOR), etc. The investigations have been conducted in a wide range of sandstone and carbonate core samples, such as: feldspar-rich sandstone, Berea sandstone, Nugget E 77 No.19 2.1 Experimental Setup Fig. (3) Shows the core-flooding setup used to conduct the CO2 (gas-liquid-supercritical)–water displacements. The experimental system consists of two high-pressure syringe pumps (Teledyne ISCO, Lincoln, NE, United States) with flowrate ranging from 0.0001 to 25 ml/min for CO2 injection and CO2 collection, a core holder, a water bath (GD 100) to control the temperature, a confining pressure pump (CM400) and a vacuum pump (Edwards, Model E2M5). A LabVIEW program was built to record the readings from the pressure transducers (UNIK 5000 pressure-sensor, 0-100bar) at the inlet and the outlet of the core sample. Fig. (3) The experimental setup for CO2 (gas-liquid-supercritical)–water displacements. Fig. (3) The experimental setup for CO2 (gas-liquid-supercritical)–water displacements. Materials and Experimental Setup 2 The unsteady state dynamic drainage experiments (CO2-water displacements) were conducted on a prototypical sandstone core sample from Guillemot A Field in the North Sea. The core sample is 1 inch in diameter and 3 inches in length as shown in Fig. (2). The average porosity and absolute water permeability of the core sample were about 14% and 15.8mD, respectively. Before the CO2-water displacement, the pore volume, porosity and absolute water permeability were determined. The weight difference between the dry and the wet core sample was used to calculate the core sample pore volume and porosity. The absolute water permeability was calculated by using the average pressure difference and the water flowrate under quasi-steady state conditions. The water used in this study was deionized. E 78 No.19 No.19 No.19 Journal of Petroleum Research & Studies (JPR& Fig. (2) Core sample used in this study nal of Petroleum Research & Studies Fig. (2) Core sample used in this study Journal of Petroleum Research & Studies (JPR&S) Fig. (2) Core sample used in this study Journal of Petroleum Research & Studies (JPR&S) The core sample was wrapped into a shrinkable Teflon tube followed by a rubber sleeve and then placed inside the core holder. The core holder was mounted horizontally inside the water bath. The confining pressure was maintained at about 135 bars, which is always higher than the pore pressure to prevent fluid bypassing. Prior to each flooding experiment, a constant pressure was applied to the entire system using the syringe pump at each end. The water bath was set to the required temperature. During the experiment, the fluid flowrate and pressure were controlled by two high pressure syringe pumps (Teledyne ISCO, Lincoln, NE, United States) placed under room conditions. The transient behavior of the inlet pressure, the outlet pressure and the outlet fluid (water and CO2) flowrate were closely monitored and analyzed. The inlet and the outlet pressure transducer readings were recorded every six seconds using the LabVIEW software, in order to calculate the pressure difference between the inlet and the outlet. At the end of each experiment, the core sample weight was measured using a Sartorius weighing scale with a resolution of 0.0001g. The residual water saturation (Swr) with respect to the injected CO2 was calculated as the ratio of the produced water to the total core pore volume. It should be noticed that since the injecting and collecting pumps are placed under room temperature, the injected CO2 experiences an expansion. The density of the injected CO2 varies as the CO2 enters the water bath. The density ratio (defined in Equation 1) suggested by Perrin and Benson [29] has been used to calculate the real injection rate inside the core sample. For instance, at experimental pressure of 40 bars, a flowrate of 1 cm3/min at 20°C becomes 1.108cm3/min at 33°C. However, at experimental pressure of 70 bars, it becomes 3.288cm3/min. ௗ಴ೀమమబ೚಴ǡరబ್ೌೝ ௗ಴ೀమయయ೚಴ǡరబ್ೌೝ (1) CO2- water displacement procedure 3 The unsteady state CO2-WATER displacements, gasCO2-WATER displacement, LiquidCO2-WATER displacement and supercriticalCO2-WATER displacement were conducted on a sandstone core sample. E 79 No.19 Results and discussions 4 To gain a deep insight into the CO2-WATER dynamic drainage displacements and the effect of CO2 phase, the inlet and outlet pressure, outlet CO2 and water flow rates, the estimated residual water saturation and endpoint relative CO2 permeability were measured and analyzed. Journal of Petroleum Research & Studies (JPR&S) the first period. During the first period, the differential pressure profile of liquid CO2 characterized by a quasi-pressure reduction while that of gaseous and supercritical CO2 phases characterized by a high reduction. The results also show that the response of the differential pressure profile to the increase in the experimental pressure is a function of CO2 phase, too. For sub critical CO2 phases (gaseous and liquid CO2), the increase in the experimental pressure led to an increase the differential pressure profile while for supercritical phase the increase in the pressure caused a reduction in the pressure differential pressure profile. Fig. (4) shows that the increase in the experimental pressure led to an increase in the rate of the pressure difference (PD) oscillation, a rise in the maximum-pressure difference (Pdmax), a rise in the quasi-pressure difference, and a reduction in the time required to achieve the maximum pressure difference (corresponding time). The quasi pressure difference in this study refers to the pressure difference at the end of the core flooding. The rate of the change in the PD oscillations, pressure differences, and corresponding time depend on the magnitude of the experimental pressure. The highest change occurred as the experimental pressure increased from low (40 and 50 bars) to higher pressure displacements (70 bars). For illustration, as the experimental pressure increased from 40 to 50 bars, the rate of PD oscillations increased by around 33% and the Pdmax by about 2.50 % while the quasi pressure difference was constant at around 1 bar. The corresponding time declined by approximately 17 %. However, as the pressure increased from 50 to 70 bars, the PD oscillations increased by 225%, the Pdmax by around 9%, and the quasi pressure difference by 165%. The corresponding time dropped considerably by around 78%. The high reduction in the corresponding time as the pressure increased from 50 to 70 bars can be related mainly to gas density and CO2 injection rate. As pressure increases, the gaseous CO2 became denser and the injection rate increased due to temperature difference, for more information see page 80. Hence, gaseous CO2 needed much less time to be compressed to the required pressure. On the other hand, the high increase in the quasi pressure difference can be related mainly to the increase in the applied viscous forces due to increasing viscosity and the injection injection rate because of gas expansion. 4.1 Effect of CO2 phase on the differential pressure profile as experimental pressure increases. Fig. (4) to Fig. (6) Show that the differential pressure profile is characterized by a high reduction, mainly during the first period (i.e before CO2 breakthrough). This reduction occurs as the CO2/water interface proceeds along the core sample, thereby a more viscous fluid (water) is being replaced by a less viscous fluid (CO2) [30]. The results indicate that the differential pressure profile is a function of CO2 phase, particularly during The results indicate that the differential pressure profile is a function of CO2 phase, pa ate that the differential pressure profile is a function of CO2 phase, particularly during E 80 No.19 No.19 No.19 Journal of Petroleum Research & Studies The maximum pressure differences can be related to the pressure drop due to viscous forces and that due to interfacial tension forces. As the experimental pressure increases, the pressure drop due to viscous forces increases while that due to interfacial forces reduces. This is because the increase in pressure causes an increase in gas viscosity and CO2 injection rate as well as a reduction in the CO2- E 81 Journal of Petroleum Research & Studies (JPR&S) Journal of Petroleum Research & Studies (JPR&S) water IFT tension and increase in the contact angle because of increasing CO2 solubility [31, 32]. Hence, the observed increase in the maximum pressure difference with increasing pressure is because viscous forces became larger than interfacial forces. It should be noticed that the observed fluctuations in the differential pressure profile (PD oscillations) are due to the ratio of the interfacial forces to viscous forces. The phenomenon of PD oscillations occurs when the interfacial forces becomes large enough to overcome viscous forces. The result is a complete blocking of water production until the pressure builds up to overcome the interfacial forces and open closed flow paths [30]. The complete blocking of production occurs due to the occurrence of the re-imbibition process. It has been observed by Plug and Bruining that an alternate drainage and imbibition process occurs during CO2 injection when the measurements close to the critical point of CO2. This has been attributed to small perturbations that change the density and viscosity of CO2 and temporary CO2-wet behaviour [3]. The phenomenon of PD oscillations has been investigated in depth in a different study. Fig. (4) Effect of pressure on the differential pressure profile of gas CO2-water displacements conducted at 0.4 ml/min, 33 oC. -0.4 -0.2 0 0.2 0.4 0.6 0.8 1 0 20 40 60 80 100 Pressure difference (bar) Time (min) 70bars 50bars 40bars Fig. (4) Effect of pressure on the differential pressure profile of gas CO2-water displacements conducted at 0.4 ml/min, 33 oC. Fig. (5) shows that as the experimental pressure of liquid CO2 increased, the maximum pressure difference increased by 17% (from 0.463 to 0.543 bar), and the quasi-pressure difference by around 5% (from 0.222 to 0.233 bars). The corresponding time was small and constant at around 0.5 min. Interestingly, the PD oscillations disappeared. E 82 No.19 (JPR&S) The disappearance of the oscillations and the small and constant corresponding time can be related to the dense nature of liquid CO2 and the negligible impact of interfacial forces. The dense nature means that the pressure drop due to viscous forces is always higher than that due to interfacial forces, thereby no PD oscillations. Moreover, the dense nature of liquid CO2 means much less corresponding time is required to reach the maximum pressure difference in comparison to gaseous CO2. For instance, as the CO2 phase changed from gaseous to liquid CO2 state, the corresponding time decreased by around 71 % (from 1.7 to 0.5 min) as shown in Fig. (4) and Fig. (5). Fig. (5) Effect of pressure on the differential pressure profile of liquid CO2-water displacements conducted at 0.4ml/min, and 20 0C. 0 0.1 0.2 0.3 0.4 0.5 0.6 0 10 20 30 40 50 60 Pressure difference (bar) Time (min) 70bars 60bars 70bars 60bars Fig. (5) Effect of pressure on the differential pressure profile of liquid CO2-water displacements conducted at 0.4ml/min, and 20 0C. On the other hand, Fig. (6) reveals that increasing pressure caused a significant reduction in the maximum and quasi pressure differences and the corresponding time of supercritical CO2 phase. As the pressure raised from 75 to 90 bars, the maximum-pressure difference dropped by around 47 %, the quasi-pressure difference by around 39 %, and the corresponding time by around 68%. The largest change in the maximum and the quasi-pressure differences occurred as the pressure increased from 80 to 90 bars. When the pressure increased from 75, 77, 80 to 90 bars, the maximum pressure difference decreased from around 1.121, 0.9275, 0.767, to 0.599 bars, and the quasi-pressure difference declined from 0.363, 0.3045, 0.281 to 0.221 bars. However, the corresponding times are 1.9, 0.8, 0.4, and 0.6 mins. Fig. (6) suggest also that as the pressure increases, the differential pressure profile of supercriticalCO2- water displacement transformed from the likeness of a gaseous CO2 behaviour to a liquid CO2 behaviour. For instance, the differential pressure profile of the 75 bars-experiment is very similar to that E 83 No.19 Journal of Petroleum Research & Studies (JPR&S) (JPR&S) of a typical high-pressure gasCO2-water displacement while that of 90 bars is virtually identical to that of a typical liquid CO2-water displacement. The similarity to a gaseous or liquid CO2 behaviour has been decided based on the differential pressure profile, mainly during the first period. The differential pressure profile of the experiments conducted at gaseous CO2 conditions characterizes by a sharp pressure reduction during the first period. On the other hand, the differential pressure profile of the experiments conducted at liquid CO2 conditions characterizes by a quasi-stable pressure profile during the first period. The reduction in the differential pressure profile can be related mainly to the reduction in the interfacial tension forces due to the drop in the CO2-water interfacial tension and the increase in contact angle because of the increase in CO2 solubility [32, 33]. The transformation of the differential pressure profile with increasing pressure proposes that the interfacial and viscous properties of supercritical CO2 phase become similar to that of gaseous CO2 phase at low pressures and similar to that of liquid CO2 phase at high pressures. The liquid CO2 characterized by a higher impact of viscous forces and a lesser impact of interfacial forces forces in comparison to gaseous CO2. With increasing pressure, the impact of the viscous forces become higher while the impact of the interfacial forces become lesser. This because the increase in the experimental pressure leads to an increase in the CO2 density and viscosity as well as a decrease in the interfacial tension and an increase in the contact angle due to increasing CO2 solubility [3, 5]. For instance, as the pressure increased from 75 to 90 bars, the scCO2 density increased from 410.255 to 666.69 kg/m3, the CO2 injection rate decreased from 0.798 to 0.506 ml/min, the viscosity increased from 33.3095 to 53.837 [ 10-6 (Pa s)], and the CO2-water interfacial tension reduced from around 28 to 25 mN/m (34). The transformation of the differential pressure profile with increasing pressure proposes that the interfacial and viscous properties of supercritical CO2 phase become similar to that of gaseous CO2 phase at low pressures and similar to that of liquid CO2 phase at high pressures. The liquid CO2 characterized by a higher impact of viscous forces and a lesser impact of interfacial forces forces in comparison to gaseous CO2. (JPR&S) With increasing pressure, the impact of the viscous forces become higher while the impact of the interfacial forces become lesser. This because the increase in the experimental pressure leads to an increase in the CO2 density and viscosity as well as a decrease in the interfacial tension and an increase in the contact angle due to increasing CO2 solubility [3, 5]. For instance, as the pressure increased from 75 to 90 bars, the scCO2 density increased from 410.255 to 666.69 kg/m3, the CO2 injection rate decreased from 0.798 to 0.506 ml/min, the viscosity increased from 33.3095 to 53.837 [ 10-6 (Pa s)], and the CO2-water interfacial tension reduced from around 28 to 25 mN/m (34). Moreover, it is expected also that as the pressure increases, the wettability of liquid and supercritical CO2 phases might become very close at high pressure conditions. For supercritical CO2, a potential wettability alteration towards hydrophobic wetting state might occur as pressure increases [32]. However, for liquid CO2, the potential hydrophobic wetting state might occur due to phase transformation [8]. Yang et al. 2005 observed that as gaseous CO2 phase transformed to liquid CO2, the wetting state becomes hydrophobic [8]. Moreover, it is expected also that as the pressure increases, the wettability of liquid and supercritical CO2 phases might become very close at high pressure conditions. For supercritical CO2, a potential wettability alteration towards hydrophobic wetting state might occur as pressure increases [32]. However, for liquid CO2, the potential hydrophobic wetting state might occur due to phase transformation [8]. Yang et al. 2005 observed that as gaseous CO2 phase transformed to liquid CO2, the wetting state becomes hydrophobic [8]. E 84 No.19 No.19 Journal of Petroleum Research & Studies Journal of Petroleum Research & Studies (JPR&S) (JPR&S) Fig. (6) Effect of pressure on the differential pressure profile of supercritical CO2-water displacements conducted at 0.4ml/min, and 33 0C. 2 Effect of CO2 phase on residual water saturation and relative permeability as i t l i 0 0.2 0.4 0.6 0.8 1 1.2 0 20 40 60 80 100 Pressure difference (bar) Time (min) 75bars 77bars 80bars 90bars Fig. (6) Effect of pressure on the differential pressure profile of supercritical CO2-water displacements conducted at 0.4ml/min, and 33 0C. 0 0.2 0.4 0.6 0.8 1 1.2 0 20 40 60 80 100 Pressure difference (bar) Time (min) 75bars 77bars 80bars 90bars Fig. (JPR&S) (6) Effect of pressure on the differential pressure profile of supercritical CO2-water displacements conducted at 0.4ml/min, and 33 0C. 4.2 Effect of CO2 phase on residual water saturation and relative permeability as i t l i At the end of the core floodings, the volume of the produced water was measured, the system was depressurized to the atmospheric pressure to allow total degassing of the CO2, and the core sample was weighed to obtain the residual water saturation. To calculate the relative CO2 permeability using Darcy’s law, the average differential pressure and the average CO2 flow rate of the last period were used. The CO2 viscosity at the experimental pressure and temperature was calculated using NIST CHEMISTRY Webbook website [35]. The relative permeability of the CO2 is calculated at the residual water saturation. The determination of the relative permeability of CO2 and its variation with the investigated parameters is of practical interest for CO2 sequestration in subsurface formations [36]. Table (1) reveals that the relative permeability of the three CO2 phases were in the range of 11-21% while the residual water saturations in the range of 36-42%. Both gaseous and supercritical CO2 gave close relative permeabilities. Liquid CO2 gave the highest relative permeabilities. The increase in the experimental pressure led to an increase in the relative permeability of CO2 (KrCO2) and a decline in the residual water saturation (Swr). The scale of change depends on CO2 phase. The increase in the KrCO2 can be attributed mainly to the increase in the CO2 injection rate due to the high impact of gas expansion, for more information see page 80. The increase in injection rate might result in forcing the E 85 No.19 (JPR&S) CO2 to flow through a wider range of pores of the core sample. The reduction in the Swr can be attributed to the increase in the capillary number (Ca) and the reduction in mobility ratio (M). CO2 to flow through a wider range of pores of the core sample. The reduction in the Swr can be attributed to the increase in the capillary number (Ca) and the reduction in mobility ratio (M). For gaseous CO2, increasing pressure from 40 to 70 bars at 33 oC caused the KrCO2 to increase by around 5.4 %, and the Swr to decrease by around 4.7 %. The largest increase in KrCO2 and the highest reduction in the Swr occurred as the pressure increased from low pressure displacements (40 and 50 bars) to high pressure displacements (70 bars). This can be attributed to a relatively high increase in the Ca and a high reduction in M. For liquid CO2, as the pressure increased from 40 to 70 bars at 20 oC, the KrCO2 increased very slightly by around 0.6 %, and the Swr decreased by around 2.2 %. However, for supercritical CO2, as the pressure increased from 75 to 90 bars at 33 oC, the KrCO2 increased significantly by around 8 %, and the Swr decreased by around 1.5 %. Journal of Petroleum Research & Studies (JPR&S) 5 Conclusion In this paper, the effect of CO2 phase on the pressure and production profiles of CO2-water drainage floodings has been investigated as the experimental pressure increases. The investigations were conducted for the three phases of CO2 (gas, liquid, and supercritical). The results indicate a considerable influence of the CO2 phase on the differential pressure profile, relative permeability of CO2, and residual water saturation. The relative permeabilities of the three CO2 phases were in the range of 11-21% while the residual water saturations were in the range of 36 to 42%. Both gaseous and supercritical CO2 gave close relative permeabilities. Liquid CO2 gave the highest relative permeabilities. The increase in the experimental pressure led to an increase in the relative permeability of CO2 (KrCO2) and a decline in the residual water saturation (Swr). The scale of change depends on CO2 phase. The differential pressure profile is a function of CO2 phase, particularly before CO2 breakthrough. The differential pressure profile of liquid CO2 characterized by a quasi-pressure reduction while that of gaseous and supercritical CO2 phases characterized by a high reduction. The response of the differential pressure profile to the increase in the experimental pressure is a function of CO2 phase, too. For sub critical CO2 phases (gaseous and liquid CO2), the increase in pressure led to an increase the differential pressure profile while for supercritical phase the increase in the pressure led to a reduction in the pressure differential pressure profile. For gaseous CO2 phase, the increase in the experimental pressure led to an increase in the rate of the pressure difference (PD) oscillation, a rise in the maximum-pressure difference (Pdmax), an increase in the quasi-pressure difference, and a reduction in the time required to reach the Pdmax (the corresponding time). The highest change occurred as the pressure increased from low to high pressure (70 bars) displacements. As the experimental pressure increased from 40 to 50 bars, the rate of PD oscillations increased by around 33% and the Pdmax by about 2.50 % while the quasi pressure difference was constant at around 1 bar. The corresponding time declined by approximately 17 %. However, as the pressure increased from 50 to 70 bars, the PD oscillations increased by 225 %, the Pdmax by around 9 %, and the quasi pressure difference by 165 %. The corresponding time dropped considerably by around 78%. Journal of Petroleum Research & Studies (JPR&S) Table (1) Effect of pressure on the end-point relative permeability of CO2, and residual water saturation. Table (1) Effect of pressure on the end-point relative permeability of CO2, and residual water saturation. Table (1) Effect of pressure on the end-point relative permeability of CO2, and residual water saturation. Parameter Experiment Effective permeabi lity (mD) Relative permeabi lity (%) Residual water Mobility ratio Capillary number Gaseous CO2 40-0.4ml/min-33 oC 1.768 11.3 42.44 46.26 5.265E-08 50-0.4ml/min-33 oC 1.987 12.7 40.89 44.56 6.250E-08 70-0.4ml/min-33 oC 2.613 16.7 37.79 36.10 2.504E-07 Liquid CO2 60-0.4ml/min-20 oC 3.188 20.3 36.9 14.3315 2.174E-07 70-0.4ml/min-20 oC 3.248 20.7 36.3 13.3996 2.734E-07 Supercritica l CO2 75-0.4ml/min-33 oC 1.858 11.849 37.2 22.48 2.566E-07 77-0.4ml/min-33 oC 2.207 14.077 37.4 19.53 2.594E-07 80-0.4ml/min-33 oC 2.388 15.228 37.2 16.32 2.645E-07 90-0.4ml/min-33 oC 3.128 19.949 35.7 13.91 2.965E-07 E 86 No.19 5 Conclusion For liquid CO2 phase, increasing the experimental pressure from 60 to 70 bars caused the maximum pressure difference to increase by 17% and the quasi-pressure difference by around 5%. The corresponding time was constant at around 0.5 min. The differential pressure profile does not show pressure difference oscillations. E 87 No.19 Journal of Petroleum Research & Studies (JPR&S) References 1. Li Z, Dong M, Li S, Huang S. CO2 sequestration in depleted oil and gas reservoirs—caprock characterization and storage capacity. Energy Conversion and Management. 2006;47(11):1372-82. 2. Kaveh NS, Wolf K, Ashrafizadeh S, Rudolph E. Effect of coal petrology and pressure on wetting properties of wet coal for CO2 and flue gas storage. International Journal of Greenhouse Gas Control. 2012;11:S91-S101. 1. Li Z, Dong M, Li S, Huang S. CO2 sequestration in depleted oil and gas reservoirs—caprock characterization and storage capacity. Energy Conversion and Management. 2006;47(11):1372-82. 2. Kaveh NS, Wolf K, Ashrafizadeh S, Rudolph E. Effect of coal petrology and pressure on wetting properties of wet coal for CO2 and flue gas storage. International Journal of Greenhouse Gas Control. 2012;11:S91-S101. 1. Li Z, Dong M, Li S, Huang S. CO2 sequestration in depleted oil and gas reservoirs—caprock characterization and storage capacity. Energy Conversion and Management. 2006;47(11):1372-82. 3. Plug W-J, Bruining J. Capillary pressure for the sand–CO2–water system under various pressure conditions. Application to CO2 sequestration. Advances in Water Resources. 2007;30(11):2339-53. 4. Tutolo BM, Luhmann AJ, Kong X-Z, Saar MO, Seyfried WE. CO2 sequestration in feldspar-rich sandstone: coupled evolution of fluid chemistry, mineral reaction rates, and hydrogeochemical properties. Geochimica et Cosmochimica Acta. 2015;160:132-54. 3. Plug W-J, Bruining J. Capillary pressure for the sand–CO2–water system under various pressure conditions. Application to CO2 sequestration. Advances in Water Resources. 2007;30(11):2339-53. 4. Tutolo BM, Luhmann AJ, Kong X-Z, Saar MO, Seyfried WE. CO2 sequestration in feldspar-rich sandstone: coupled evolution of fluid chemistry, mineral reaction rates, and hydrogeochemical properties. Geochimica et Cosmochimica Acta. 2015;160:132-54. 3. Plug W-J, Bruining J. Capillary pressure for the sand–CO2–water system under various pressure conditions. Application to CO2 sequestration. Advances in Water Resources. 2007;30(11):2339-53. 4. Tutolo BM, Luhmann AJ, Kong X-Z, Saar MO, Seyfried WE. CO2 sequestration in feldspar-rich sandstone: coupled evolution of fluid chemistry, mineral reaction rates, and hydrogeochemical properties. Geochimica et Cosmochimica Acta. 2015;160:132-54. 4. Tutolo BM, Luhmann AJ, Kong X-Z, Saar MO, Seyfried WE. CO2 sequestration in feldspar-rich sandstone: coupled evolution of fluid chemistry, mineral reaction rates, and hydrogeochemical properties. Geochimica et Cosmochimica Acta. 2015;160:132-54. 5. Espinoza DN, Santamarina JC. WaterǦCO2Ǧmineral systems: Interfacial tension, contact angle, and diffusion—Implications to CO2 geological storage. Water resources research. 2010;46(7). 6. Bachu S. Sequestration of CO2 in geological media: criteria and approach for site selection in response to climate change. Energy conversion and management. 2000;41(9):953-70. 7. Shi J-Q, Xue Z, Durucan S. (JPR&S) On the other hand, increasing pressure for supercritical CO2 phase caused a significant reduction in the maximum and quasi pressure differences as well as the corresponding time. As the pressure raised from 75 to 90 for the experiments, the maximum-pressure difference dropped by around 47 %, the quasi pressure difference by around 39 %, and the corresponding time by around 68%. The largest change in the maximum and the quasi pressure differences occurred as the pressure increased from 80 to 90 bars. The increase in the experimental pressure caused the differential pressure profile of scCO2-water displacement to transform from the likeness of gas-displacement performance to that of liquid- displacement. For illustration, the differential pressure profile of the 75 bars-experiment is very similar to that of a typical high-pressure gasCO2-water displacement while that of 90 bars-displacement becomes virtually identical to that of a typical LCO2-water displacement. E 88 No.19 References Supercritical CO2 core flooding and imbibition in Tako sandstone— Influence of sub-core scale heterogeneity. International Journal of Greenhouse Gas Control. 2011;5(1):75-87. 8. Yang D, Tontiwachwuthikul P, Gu Y. Interfacial interactions between reservoir brine and CO2 at high pressures and elevated temperatures. Energy & Fuels. 2005;19(1):216-23. 8. Yang D, Tontiwachwuthikul P, Gu Y. Interfacial interactions between reservoir brine and CO2 at high pressures and elevated temperatures. Energy & Fuels. 2005;19(1):216-23. 9. Liu N, Ghorpade SV, Harris L, Li L, Grigg RB, Lee RL, editors. The effect of pressure and temperature on brine-CO2 relative permeability and IFT at reservoir conditions. SPE Eastern Regional Meeting; 2010: Society of Petroleum Engineers. 10. Suekane T, Ishii T, Tsushima S, Hirai S. Migration of CO2 in Porous Media Filled with water. Journal of Thermal Science and Technology. 2006;1(1):1-11. 11. Riazi M, Sohrabi M, Bernstone C, Jamiolahmady M, Ireland S. Visualisation of mechanisms involved in CO2 injection and storage in hydrocarbon reservoirsand water-bearing aquifers. Chemical Engineering Research and Design. 2011;89(9):1827-40. 12. Saraji S, Piri M, Goual L. The effects of SO2 contamination, brine salinity, pressure, and temperature on dynamic contact angles and interfacial tension of supercritical CO2/brine/quartz systems. International Journal of Greenhouse Gas Control. 2014;28:147-55. E 89 No.19 Journal of Petroleum Research & Studies (JPR&S) 26. Berg S, Ott H. Stability of CO2–brine immiscible displacement. International Journal of Greenhouse Gas Control. 2012;11:188-203. 26. Berg S, Ott H. Stability of CO2–brine immiscible displacement. International Journal of Greenhouse Gas Control. 2012;11:188-203. 27. Wollenweber J, Alles S, Busch A, Krooss B, Stanjek H, Littke R. Experimental investigation of the CO2 sealing efficiency of caprocks. International Journal of Greenhouse Gas Control. 2010;4(2):231- 41. 28. Chang C, Zhou Q, Xia L, Li X, Yu Q. Dynamic displacement and non-equilibrium dissolution of supercritical CO2 in low-permeability sandstone: An experimental study. International Journal of Greenhouse Gas Control. 2013;14:1-14. 29. Perrin J-C, Benson S. An experimental study on the influence of sub-core scale heterogeneities on CO2 distribution in reservoir rocks. Transport in porous media. 2010;82(1):93-109. 30. Nutt C, editor The physical basis of the displacement of oil from porous media by other fluids: a capillary bundle model. Proceedings of the Royal Society of London A: Mathematical, Physical and Engineering Sciences; 1982: The Royal Society. 31. Bennion DB, Bachu S, editors. The impact of interfacial tension and pore size distribution/capillary pressure character on CO2 relative permeability at reservoir conditions in CO2-brine systems. SPE/DOE Symposium on Improved Oil Recovery; 2006: Society of Petroleum Engineers. 32. Yang D, Gu Y, Tontiwachwuthikul P. Wettability determination of the reservoir brine− reservoir rock system with dissolution of CO2 at high pressures and elevated temperatures. Energy & Fuels. 2007;22(1):504-9. 32. Yang D, Gu Y, Tontiwachwuthikul P. Wettability determination of the reservoir brine− reservoir rock system with dissolution of CO2 at high pressures and elevated temperatures. Energy & Fuels. 2007;22(1):504-9. 33. Plug W-J, Bruining J. Capillary pressure for the sand–CO 2–water system under various pressure conditions. Application to CO 2 sequestration. Advances in Water Resources. 2007;30(11):2339-53. 34. Bachu S, Bennion DB. Interfacial tension between CO2, freshwater, and brine in the range of pressure from (2 to 27) MPa, temperature from (20 to 125)° C, and water salinity from (0 to 334 000) mg· L− 1. Journal of Chemical & Engineering Data. 2008;54(3):765-75. , , , g pressure from (2 to 27) MPa, temperature from (20 to 125)° C, and water salinity from (0 to 334 000) mg· L− 1. Journal of Chemical & Engineering Data. 2008;54(3):765-75. 35. NIST Chemistry WebBook. Thermophysical Properties of Fluid Systems 2016 [cited 2016 01/12/2016]. 36. Rathnaweera T, Ranjith P, Perera M. 36. Rathnaweera T, Ranjith P, Perera M. Effect of salinity on effective CO2 permeability in reservoir rock determined by pressure transient methods: An experimental study on Hawkesbury sandstone. Rock Mechanics and Rock Engineering. 2015;48(5):2093-110. (JPR&S) 13. Herring AL, Andersson L, Newell D, Carey J, Wildenschild D. Pore-scale observations of supercritical CO2 drainage in Bentheimer sandstone by synchrotron x-ray imaging. International Journal of Greenhouse Gas Control. 2014;25:93-101. 13. Herring AL, Andersson L, Newell D, Carey J, Wildenschild D. Pore-scale observations of supercritical CO2 drainage in Bentheimer sandstone by synchrotron x-ray imaging. International Journal of Greenhouse Gas Control. 2014;25:93-101. 14. Ott H, Pentland C, Oedai S. CO2–brine displacement in heterogeneous carbonates. International Journal of Greenhouse Gas Control. 2015;33:135-44. 15. Ott H, Berg S, Oedai S. Displacement and mass transfer of CO2/brine in sandstone. Energy Procedia. 2012;23:512-20. 16. Akbarabadi M, Piri M. Relative permeability hysteresis and capillary trapping characteristics of supercritical CO2/brine systems: An experimental study at reservoir conditions. Advances in Water Resources. 2013;52:190-206. 17. Pentland C, El-Maghraby R, Georgiadis A, Iglauer S, Blunt M. Immiscible displacements and capillary trapping in CO2 storage. Energy Procedia. 2011;4:4969-76. 18. Pentland CH, ElǦMaghraby R, Iglauer S, Blunt MJ. Measurements of the capillary trapping of superǦcritical carbon dioxide in Berea sandstone. Geophysical Research Letters. 2011;38(6). 19. Lopez O, Idowu N, Mock A, Rueslåtten H, Boassen T, Leary S, et al. Pore-scale modelling of CO2- brine flow properties at In Salah, Algeria. Energy Procedia. 2011;4:3762-9. 20. Alemu BL, Aker E, Soldal M, Johnsen Ø, Aagaard P. Influence of CO2 on rock physics properties in typical reservoir rock: a CO2 flooding experiment of brine saturated sandstone in a CT-scanner. Energy Procedia. 2011;4:4379-86. 21. Levine JS, Matter JM, Goldberg DS, Lackner KS, Supp MG, Ramakrishnan T. Two phase brine- CO2 flow experiments in synthetic and natural media. Energy Procedia. 2011;4:4347-53. 22. Bachu S. Drainage and imbibition CO2/brine relative permeability curves at in situ conditions for sandstone formations in western Canada. Energy Procedia. 2013;37:4428-36. 23. Qi R, Laforce T, Blunt M. Carbon Dioxide (CO2) Injection Design to Maximize Underground Reservoir Storage and Enhanced Oil Recovery (EOR). Developments and Innovation in Carbon Dioxide (CO2) Capture and Storage Technology (Ed MM Maroto-Valer), Woodhead Publishing Series in Energy, Oxford. 2010:169-84. 24. Pini R, Krevor SC, Benson SM. Capillary pressure and heterogeneity for the CO2/water system in sandstone rocks at reservoir conditions. Advances in Water Resources. 2012;38:48-59. 25. Saeedi A, Rezaee R, Evans B, Clennell B. Multiphase flow behaviour during CO2 geo- sequestration: Emphasis on the effect of cyclic CO2–brine flooding. Journal of Petroleum Science and Engineering. 2011;79(3):65-85. E 90 No.19 Journal of Petroleum Research & Studies Effect of salinity on effective CO2 permeability in reservoir rock determined by pressure transient methods: An experimental study on Hawkesbury sandstone. Rock Mechanics and Rock Engineering. 2015;48(5):2093-110. E 91
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An Excess of Gene Expression Divergence on the X Chromosome in Drosophila Embryos: Implications for the Faster-X Hypothesis
PLOS genetics
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D. melanogaster D. simulans D. ananassae D. persimilis D. pseudoobscura D. virilis D. melanogaster D. simulans D. yakuba D. ananassae D. pseudoobscura D. mojavensis D. virilis X Autosomes Embryos Adults D. melanogaster D. simulans D. ananassae D. persimilis D. pseudoobscura D. virilis D. melanogaster D. simulans D. yakuba D. ananassae D. pseudoobscura D. mojavensis D. virilis X Autosomes Embryos Adults D. melanogaster D. simulans D. yakuba D. ananassae D. pseudoobscura D. mojavensis D. virilis X Autosomes Adults Adults Embryos D. melanogaster D. simulans D. ananassae D. persimilis D. pseudoobscura D. virilis Embryos X Autosomes Autosomes
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Nitrogen-doped carbon nanotubes coated with zinc oxide nanoparticles as sulfur encapsulator for high-performance lithium/sulfur batteries
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Email: * Corresponding author Keywords: Abstract Nitrogen-doped carbon nanotubes coated with zinc oxide nanoparticles (ZnO@NCNT) were prepared via a sol–gel route as sulfur encapsulator for lithium/sulfur (Li/S) batteries. The electrochemical properties of the S/ZnO@NCNT composite cathode were eval- uated in Li/S batteries. It delivered an initial capacity of 1032 mAh·g−1 at a charge/discharge rate of 0.2C and maintained a revers- ible capacity of 665 mAh·g−1 after 100 cycles. The coulombic efficiency of the cathode remains unchanged above 99%, showing stable cycling performance. X-ray photoelectron spectroscopy analysis confirmed the formation of S–Zn and S–O bonds in the composite. This indicates that an enhanced cycling and rate capability of the S/ZnO@NCNT composite could be ascribed to advan- tages of the ZnO@NCNT matrix. In the composite, the active ZnO-rich surfaces offer a high sulfur-bonding capability and the NCNT core acts as a conductive framework providing pathways for ion and electron transport. The as-prepared S/ZnO@NCNT composite is a promising cathode material for Li/S batteries. Nitrogen-doped carbon nanotubes coated with zinc oxide nanoparticles as sulfur encapsulator for high-performance lithium/sulfur batteries Yan Zhao1, Zhengjun Liu1, Liancheng Sun1, Yongguang Zhang*1, Yuting Feng2 Xin Wang*3, Indira Kurmanbayeva4 and Zhumabay Bakenov4 Full Research Paper Open Access Address: 1School of Materials Science & Engineering, Research Institute for Energy Equipment Materials, Hebei University of Technology, Tianjin 300130, China, 2Synergy Innovation Institute of GDUT, Heyuan, Guangdong Province, China, 3International Academy of Optoelectronics at Zhaoqing, South China Normal University, China and 4Institute of Batteries LLC, National Laboratory Astana, Nazarbayev University, 53 Kabanbay Batyr Avenue, Astana 010000, Kazakhstan Email: Yongguang Zhang* - yongguangzhang@hebut.edu.cn; Xin Wang* - xin.wang@zq-scnu.org * Corresponding author Keywords: batteries; nanocomposites; sol–gel processes; sulfur; zinc oxide (ZnO) Beilstein J. Nanotechnol. 2018, 9, 1677–1685. doi:10.3762/bjnano.9.159 Received: 29 July 2017 Accepted: 21 May 2018 Published: 06 June 2018 Associate Editor: N. Motta © 2018 Zhao et al.; licensee Beilstein-Institut. License and terms: see end of document. Introduction batteries [1]. Additionally, sulfur is naturally abundant, has low cost and is environmentally friendly. But it is not conductive, and it dissolves into the electrolyte in the form of lithium poly- batteries [1]. Additionally, sulfur is naturally abundant, has low cost and is environmentally friendly. But it is not conductive, and it dissolves into the electrolyte in the form of lithium poly- Due to its high theoretical specific capacity of 1672 mAh·g−1 and energy density of 2600 Wh·kg−1, sulfur has been consid- ered as a promising cathode material for lithium/sulfur (Li/S) 1677 1677 Beilstein J. Nanotechnol. 2018, 9, 1677–1685. cathode material for Li/S battery in the literature. Here, we present a composite S/ZnO@NCNT cathode exhibiting stable performance and its structural and electrochemical analysis and evaluation. sulfides (Li2Sn, 4 ≤ n ≤ 8) during battery operation [2]. This is one of the major challenges in the commercialization of Li/S batteries. To overcome this problem, a rational design of the sulfur-based cathode is required, such as the addition of porous conductive materials that could “attract” or ”confine” the S atoms in the cathode, and, therefore, reduce any losses of S. Results and Discussion Figure 1 shows the XRD patterns of sulfur, ZnO@NCNT and S/ZnO@NCNT composite. It can be seen that S is successfully incorporated into the composite. The ZnO patterns can be assigned to hexagonal wurtzite (JCPDS no. 36-1451). For the patterns of ZnO@NCNT and S/ZnO@NCNT, the peaks at about 31.1°, 34.4°, 36.3°, 47.5°, 56.6°, 62.8° and 68° corre- spond to ZnO [17], and the broad peaks at around 23.8° are as- sociated with NCNT [18]. The size of the ZnO nanoparticles was calculated based on the (101) peak using the Scherrer equa- tion [13,19] and was found to be around 6.2 nm. As an excellent conductive agent, carbon-based materials, e.g., carbon black, graphene and carbon nanotubes (CNTs), have been widely used in Li/S composite cathode materials [3]. In addition, by doping with N and a precise control of its morphol- ogy, these carbon materials can also play an active role in S confinement [4]. For example, it has been reported that the functional nitrogen groups in N-doped graphene (NG) sheets have a good binding capability for lithium polysulfides, which can greatly enhance the life of Li/S batteries [5]. Another popular strategy to reduce polysulfides from dissolution is using metal oxides, such as TiO2 [6], ZnO [7], MnO2 [8], and SiO2 [9], as the additives or coating layer in the S-cathode. This is because metal oxides can provide strong binding sites with S and reduce the shuttling effect [10]. In addition, metal oxides can be easily synthesized in various morphologies, e.g., hollow structures, to “hold” S [11]. Similar to S, metal oxides are, how- ever, not conductive [12]. Therefore, an efficient approach is to use hybrids/composites of carbon materials and metal oxides, as they could provide strong binding sites to sulfur while simulta- neously improving the conductivity of the electrode. Figure 1: XRD patterns of S, ZnO@NCNT and S/ZnO@NCNT com- posite. We previously reported the synthesis of ZnO nanoparticles on NCNT as anode material for Li-ion batteries [13], and focused on the effect of NCNT on ZnO nanoparticles. A high concentra- tion of nucleation sites in NCNT allows ZnO to uniformly grow on its surface with a small size. Also, NCNT has a higher elec- trical conductivity due to its additional free electron pairs com- pared to CNT without nitrogen doping. The ZnO@NCNT com- posite showed excellent electrochemical properties in lithium- ion batteries with a reversible capacity of 664 mAh·g−1 after 100 cycles at a current density of 100 mA·g−1. Inspired by these results, we decided to use the ZnO@NCNT composite as a part of cathode in Li/S batteries, focusing on the effect of ZnO@NCNT on the absorption of polysulfides. Figure 1: XRD patterns of S, ZnO@NCNT and S/ZnO@NCNT com- posite. In order to determine the sulfur content in the S/ZnO@NCNT composite, the samples were studied by thermogravimetric analysis (TGA) in nitrogen gas. Figure 2 shows that the sulfur content in the S/ZnO@NCNT composite is about 74.7 wt %, which agrees well with the precursors proportions used during preparation. It can be concluded that the adopted technique, ball-milling followed by heat treatment, enables preparation of a high-performance composite of sulfur and ZnO@NCNT as it is shown in the following experiments. Accordingly, in this work, we synthesized nanocomposites of zinc oxide-coated nitrogen-doped carbon nanotubes with sulfur (S/ZnO@NCNT). ZnO was chosen because it is cheap, non- toxic and stable [14,15]. More importantly, ZnO demonstrates a strong affinity to polysulfides. In addition, NCNT was used due to its good conductivity and the ability of active nitrogen sites to enhance the electrochemical performances of Li/S batteries [13,16]. To the best of our knowledge, such uniquely structured S/ZnO@NCNT composites have been rarely reported as Figure 3 illustrates the morphology and element distribution for the as-obtained ZnO@NCNT composite before S loading. ZnO@NCNT exhibits a bamboo-like shape, ZnO nanoparticles are uniformly coated on the NCNT walls, and most of the nano- particles have a diameter of less than 10 nm (Figure 3c), which 1678 Beilstein J. Nanotechnol. 2018, 9, 1677–1685. Figure 2: TGA curve of the S/ZnO@NCNT composite. represent different planes of ZnO, revealing the polycrystalline structure of the as-prepared ZnO@NCNT. Morphology and structure of the ZnO@NCNT before S loading are similar to those in our previous studies, and were discussed in our previous work [13]. After loading with S, the morphology of resulting S/ZnO@NCNT composite was again characterized by SEM and TEM (Figure 4). These images show that, although there are some large ZnO particles, the NCNT walls are coated by fine ZnO particles. Moreover, the EDX mapping confirms the suc- cessful loading and homogeneous distribution of S in the com- posite (Figure 4f). As can be seen from Figure 4g, the S/ZnO@NCNT composite still maintains a bamboo-shaped structure, but the material is agglomerated and cross-linked to each other, facilitating the transport of ions. Figure 2: TGA curve of the S/ZnO@NCNT composite. is consistent with the results of our previous research [13]. Energy-dispersive X-ray spectroscopy (EDX) also confirms the presence and even distribution of C, Zn, O and N in ZnO@NCNT (Figure 3d–g). The crystal lattice fringes with a d-spacing of 0.26 and 0.25 nm were observed in the HRTEM image of the ZnO@NCNT composite (Figure 3a), which corre- spond to the (002) and (101) planes of ZnO, respectively. Figure 3b shows the selected area electron diffraction (SAED) patterns of the ZnO@NCNT composite. The diffraction rings Some of the ZnO planes in the SAED patterns (Figure 3b), e.g., (101) and (112), are non-polar surfaces. They have been re- ported to have a much higher surface energy and therefore to be more active than the polar (100) plane [20]. Moreover, the high- Miller-index surface (103) observed in SAED pattern is usually more active than a low-Miller-index surface [21]. Therefore, one can expect that these active ZnO surfaces in the Figure 3: (a) HRTEM image; (b) SAED patterns; (c) TEM image; (d–g) EDX mapping images of the ZnO@NCNT composite. Figure 3: (a) HRTEM image; (b) SAED patterns; (c) TEM image; (d–g) EDX mapping images of the ZnO@NCNT composite. 1679 Beilstein J. Nanotechnol. 2018, 9, 1677–1685. Figure 4: (a) SEM image; (b–f) EDX mapping; (g,h) TEM images of S/ZnO@NCNT composite. Figure 4: (a) SEM image; (b–f) EDX mapping; (g,h) TEM images of S/ZnO@NCNT composite. ZnO@NCNT composite can exhibit a strong bonding capacity for S. This will reduce the S losses to the electrolyte, and thus improve the cycling performance of the Li/S battery. In fact, the S–Zn and S–O bonds were confirmed by X-ray photoelectron spectroscopy (XPS) of the as-obtained S/ZnO@NCNT compos- ite (Figure 5). In the S 2p spectrum, one major peak located at 161.9 eV actually corresponds to the S 2p in ZnS (Figure 5d) [22]. This suggests that, after S loading, S–Zn bonds were formed. The other two major peaks located at 163.1 and 164.1 eV in the S 2p spectrum could be identified as S 2p3/2 and S 2p1/2 species. Moreover, two weak peaks at 163.6 and 165 eV are associated with S–O bonds, and another weak peak located around 169.5 eV can be attributed to S=O bonds, which might result from S oxidation or S–O bonding on the ZnO surface [23]. An obvious C–N/C–S bonding was found at 285.2 eV in the C 1s spectrum (Figure 5c) [24]. Regarding the Zn 2p spec- trum, the peaks located at 1022.2 and 1045.3 eV are the 2p3/2 and 2p1/2 states, respectively (Figure 5b) [25]. Since Zn–O and Zn–S have a similar XPS bonding energy in the two Zn states, they are not distinguishable in the Zn 2p spec- trum. configuration. Figure 6 shows the discharge/charge potential profiles at 0.2C. Two typical plateaus appear during the dis- charge process. The plateau at 2.35 V can be related to the for- mation of long-chain polysulfides (Li2Sn, n ≥ 4), another plateau at 2.1 V is associated with the electrochemical transi- tion of Li2Sn to lithium sulfide (Li2S) [26]. The S/ZnO@NCNT composite delivers an initial specific discharge capacity of 1032 mAh·g−1. There is a slight capacity fading and it drops to 905 mAh·g−1 in the third cycle. The potential plateaus were maintained in the first three cycles. The cycling performance of the S/ZnO@NCNT cathode is presented in Figure 7. The results show that after 100 cycles the cathode still maintains a discharge capacity of 665 mAh·g−1. The coulombic efficiency of the S/ZnO@NCNT cathode remains unchanged above 99% after the 100th cycle, i.e., the S/ZnO@NCNT cathode exhibits very stable cycling perfor- mance. The long-term cycling behavior of the S/ZnO@NCNT cathode is presented in Figure 8. One can see that the system exhibits an extremely steady performance even after 300 cycles at 1C. The performance of the as-prepared S/ZnO@NCNT composite as a cathode in Li/S batteries was evaluated in lithium half-cell It is suggested that such a good performance originates from a strong bonding capacity of the reactive ZnO planes in the com- 1680 Beilstein J. Nanotechnol. 2018, 9, 1677–1685. Figure 5: XPS spectra of S/ZnO@NCNT composite. Figure 6: Discharge/charge voltage profiles of the S/ZnO@NCNT cathode for the initial three cycles at 0.2C. The discharge/charge potential profiles of the various rates also confirm the excellent stability S/ZnO@NCNT composite cathode (Figure 11). The show that there is only a slightly fading of the potential p with increasing rate. More importantly, it can be observ there is only a small polarization of the electrode, demonstrates highly reversible features of Li ion insertio tion in the S/ZnO@NCNT composite at various cycling Figure 10: Rate capability of the S/ZnO@NCNT composite cathode. Figure 8: Long-term cycle life of the S/ZnO@NCNT cathode at 1C. Figure 10: Rate capability of the S/ZnO@NCNT composite cathode. g g y @ Figure 9: The performance comparison of S/ZnO@NCNT electrodes with sulfur loadings of 2.5, 3.25, 4.0 and 4.75 mg·cm−2 at the 10th cycle at 0.2C. which both enhanced charge transfer and conductivity. Along with this, the NCNT network provides a large micro-scaffold in the S/ZnO@NCNT composite to accommodate S and Li ions, and, therefore, to buffer the volume expansion/shrinkage caused by the fast Li insertion/deletion. Moreover, small size ZnO nanoparticles provide abundant active sites for Li ion insertion and deletion and can also “buffer” the structural damage of the composite. In our previous work [13], it has been demonstrated that NCNT network and ZnO nanoparticles in ZnO@NCNT have these advantageous properties for the use in Li-ion batteries. The discharge/charge potential profiles of the cell at various rates also confirm the excellent stability of the S/ZnO@NCNT composite cathode (Figure 11). The results show that there is only a slightly fading of the potential plateaus with increasing rate. More importantly, it can be observed that there is only a small polarization of the electrode, which demonstrates highly reversible features of Li ion insertion/dele- tion in the S/ZnO@NCNT composite at various cycling rates. Figure 9: The performance comparison of S/ZnO@NCNT electrodes with sulfur loadings of 2.5, 3.25, 4.0 and 4.75 mg·cm−2 at the 10th cycle at 0.2C. sulfur tends to agglomerate, and this negatively affects the cycle performance of the cell as well. Figure 11: Discharge/charge voltage profiles of S/ZnO@NCNT com- posite cathode at various rates. The rate capability of the S/ZnO@NCNT cathode at rates from 0.1C to 2C was studied as well (Figure 10). Although the dis- charge capacity of the S/ZnO@NCNT cathode gradually decreases with the cycling rate, at each individual rate from 0.2C to 2C, the composite cathode exhibit a relatively steady reversible capacity. Figure 7: Cycling performance of the S/ZnO@NCNT cathode at 0.2C. Figure 5: XPS spectra of S/ZnO@NCNT composite. Figure 5: XPS spectra of S/ZnO@NCNT composite. Figure 6: Discharge/charge voltage profiles of the S/ZnO@NCNT cathode for the initial three cycles at 0.2C. Figure 7: Cycling performance of the S/ZnO@NCNT cathode at 0.2C. posite. As confirmed by the XPS analysis, the exposed active surfaces on ZnO can “hold” a large amount of S species through Zn–S and O–S bonds and therefore contribute to the observed excellent cycling performance. posite. Figure 9 shows the comparison of discharge capacity at the tenth cycle at a current density of 0.2C for the samples with different S loading. It can be seen that the discharge capacity in- creases initially, and a high value of 805 mAh·g−1 was deliv- ered after ten cycles at a S loading of 3.25 mg·cm−2. However, as the loading increased further, the capacity value reduced sig- nificantly. For example, at a high S loading of 4.75 mg·cm−2, the material could deliver a capacity of 723 mAh·g−1. This capacity decrease could be due to a reduced conductivity of the electrodes related to the excessive content of S. Furthermore, In a Li/S cell, the amount of sulfur loading is critical and strongly influences its electrochemical performance. Therefore, we fabricated S/ZnO@NCNT electrodes with various S load- ings of about 2.50, 3.25, 4.00 and 4.75 mg·cm−2, and investigat- ed the effect of loading on the discharge capacity of the com- 1681 Beilstein J. Nanotechnol. 2018, 9, 1677–1685. Figure 10: Rate capability of the S/ZnO@NCNT composite cathode. Figure 8: Long-term cycle life of the S/ZnO@NCNT cathode at 1C. Figure 9: The performance comparison of S/ZnO@NCNT electrodes with sulfur loadings of 2.5, 3.25, 4.0 and 4.75 mg·cm−2 at the 10th cycle at 0.2C. Figure 10: Rate capability of the S/ZnO@NCNT composite cath which both enhanced charge transfer and conductivity with this, the NCNT network provides a large micro-sca the S/ZnO@NCNT composite to accommodate S and and, therefore, to buffer the volume expansion/shrinkage by the fast Li insertion/deletion. Moreover, small si nanoparticles provide abundant active sites for Li ion in and deletion and can also “buffer” the structural damag composite. In our previous work [13], it has been demo that NCNT network and ZnO nanoparticles in ZnO@ have these advantageous properties for the use in batteries. Preparation of S/ZnO@NCNT composite The as-prepared ZnO@NCNT was mixed with nano-sulfur in a molar ratio of 1:3 by ball-milling at 350 min−1 for 3 h to obtain the sulfur composite precursor. The S/ZnO@NCNT composite was obtained by heating the precursor at 155 °C for 10 h, in argon flow with a heating rate of 5 °C·min−1. The sulfur-doping method was described in our previous study [33]. Conclusion Nitrogen-doped carbon nanotubes coated with zinc oxide (ZnO@NCNT) were successfully prepared via a sol–gel synthe- tic route. They exhibit a unique ability to absorb polysulfides and, thus, to improve electrochemical properties of a S cathode. The S/ZnO@NCNT cathode has shown excellent cycling stability and rate capability in Li/S batteries. This enhanced electrochemical performance originates from its active ZnO sur- faces, which can provide a strong bonding capability for S atoms. Moreover, it is believed that the large micro-scaffold in the NCNT network not only improves the conductivity of the composite, but also facilitates the modulation of S and Li ions, buffering the volume expansion/shrinkage caused by the fast Li insertion/deletion. At 2C, a reversible capacity of 650 mAh·g−1 was reached. When the current rate was changed back to 0.1C, the capacity of the S/ZnO@NCNT cathode recov- ered to 822 mAh·g−1. This indicates that the as-prepared S/ZnO@NCNT composite is very stable and can tolerate the abusive condition of high-rate Li ion insertion and deletion. In addition to a strong S “confinement” effect of the active ZnO surface, this might also be attributed to the NCNT network and the small size of ZnO nanoparticles (6.2 nm) in the composite, Figure 11: Discharge/charge voltage profiles of S/ZnO@NCNT com- posite cathode at various rates. 1682 Beilstein J. Nanotechnol. 2018, 9, 1677–1685. Table 1 compares the performance data reported for Li/S batteries with the results of this work. The S/ZnO@NCNT elec- trode prepared in this work displays superior electrochemical performance, even with the higher sulfur loadings. The S/INC composite reported in our previous research work is based on INC, which has a high specific surface area and a large number of mesopores. Unlike ZnO@NCNT reported in the current work, which binds sulfur to the surface, INC encapsulates sulfur inside the pore structure and therefore provides a higher specif- ic capacity. However, INC does not have ZnO-rich active sites and is prone to damage upon the intercalation/deintercalation of Li ions, so the cycle performance of this system is not as good as that of S/ZnO@NCNT. Therefore, the results of this study demonstrate that the NCNT core and the smaller size of the ZnO nanoparticles are effective to remarkably improve the elec- trochemical performance of the S/ZnO@NCNT electrode. (C2H5OH, ≥99.7%). Meanwhile, 1.508 g lithium hydroxide (LiOH·H2O, ≥90%) was dissolved in another 260 mL of ethanol. The molar ratio of Zn(CH3COO)2 and LiOH·H2O was 1.3:1. These solutions were magnetically stirred until the reagents were completely dissolved. After that, the LiOH and Zn(CH3COO)2 solutions were mixed together and stirred for 20 min. Then, 0.17 g of nitrogen-doped multi-walled carbon nanotubes (NCNT, N content of 2.98%, Beijing Dk Nano Tech- nology) was added to the above mixture solution under magnet- ic stirring for a week. The resulting black sol product was centrifuged and washed several times with deionized water and ethanol, then dried in a vacuum oven at 70 °C for 12 h to obtain the ZnO@NCNT composite. Materials characterization Powder X-ray diffraction (XRD, SmartLab, Rigaku Corpora- tion) with Cu Ka radiation was used to analyze the crystal struc- ture of the S/ZnO@NCNT sample. The chemical status and elemental compositions of the sample were investigated by X-ray photoelectron spectroscopy (XPS, Shimadzu Axis Ultra). Scanning electron microscopy (SEM) images were collected on a Hitachi S4800 scanning electron microscope. High-resolution transmission electron microscopy (HRTEM) images were recorded with a JEOL JEM-2100F transmission electron microscope. The elements distribution images were detected by using TEM at 160 kV. Thermogravimetric analysis (TA Universal Analysis 2000, SDT2960) was conducted from room temperature to 500 °C with a heating rate of 10 °C·min−1 in nitrogen. Electrochemical measurements 13.Li, H.; Liu, Z.; Yang, S.; Zhao, Y.; Feng, Y.; Bakenov, Z.; Zhang, C.; Yin, F. Materials 2017, 10, 1102. doi:10.3390/ma10101102 13.Li, H.; Liu, Z.; Yang, S.; Zhao, Y.; Feng, Y.; Bakenov, Z.; Zhang Yin, F. Materials 2017, 10, 1102. doi:10.3390/ma10101102 The cathode was fabricated by mixing 80 wt % as-prepared S/ZnO@NCNT composite, 10 wt % acetylene black and 10 wt % polyvinylidene fluoride (PVDF) in N-methyl-2-pyrroli- done (NMP). The resulting homogeneous slurry was coated on nickel foam and subsequently dried at 75 °C overnight. Metallic lithium foil served as a counter and reference electrode, and micro-porous polypropylene film (Cellgard 2300) was used as a separator. The electrolyte was 1 M lithium bistrifluoromethane- sulfonamide (LiTFSI) in tetraethylene glycol dimethyl ether as a solvent. The CR2025 coin cells assembly was carried out in an argon-filled glovebox (Mikrouna, Shanghai). The charge/dis- charge cycling performances was investigated using a battery testing system (Neware, Shenzhen) in the potential range of 1–3 V vs Li/Li+. 14.Zhang, Y.; Wei, Y.; Li, H.; Zhao, Y.; Yin, F.; Wang, X. Mater. Lett. 2016, 184, 235–238. doi:10.1016/j.matlet.2016.08.017 184, 235–238. doi:10.1016/j.matlet.2016.08.017 15.Li, H.; Wei, Y.; Zhang, Y.; Yin, F.; Zhang, C.; Wang, G.; Zhumabay, B. 15.Li, H.; Wei, Y.; Zhang, Y.; Yin, F.; Zhang, C.; Wang, G.; Zhumabay, B. Ionics 2016, 22, 1387–1393. doi:10.1007/s11581-016-1661-x 16.Zhao, Y.; Yin, F.; Zhang, Y.; Zhang, C.; Mentbayeva, A.; Umirov, N.; Hong, X.; Zhumabay, B. Nanoscale Res. Lett. 2015, 10, 450. doi:10.1186/s11671-015-1152-4 17.Zhang, J.; Gu, P.; Xu, J.; Xue, H.; Pang, H. Nanoscale 2016, 8, 18578. doi:10.1039/C6NR07207K 18.Le, A. V.; Wang, M.; Shi, Y.; Noelle, D.; Qiao, Y.; Lu, W. J. Appl. Phys. 2015, 118, 968. doi:10.1063/1.4929647 2015, 118, 968. doi:10.1063/1.4929647 19.Gandhi, R. R.; Gowri, S.; Suresh, J.; Sundrarajan, M. J. Mater. Sci. Technol. 2013, 29, 533–538. doi:10.1016/j.jmst.2013.03.007 19.Gandhi, R. R.; Gowri, S.; Suresh, J.; Sundrarajan, M. J. Mater. Sci. Technol. 2013, 29, 533–538. 20.Meyer, B.; Marx, D. Phys. Rev. B 2003, 67, 039902. doi:10.1103/PhysRevB.67.039902 20.Meyer, B.; Marx, D. Phys. Rev. B 20 doi:10.1103/PhysRevB.67.039902 doi:10.1103/PhysRevB.67.039902 21.Brill, G.; Chen, Y.; Dhar, N. K.; Singh, R. J. Electron. Mater. 2003, 32, 717–722. doi:10.1007/s11664-003-0058-6 21.Brill, G.; Chen, Y.; Dhar, N. K.; Singh, R. J. Electron. Mater. Acknowledgements 717–722. doi:10.1007/s11664-003-0058-6 22.Siriwardane, R. V.; Poston, J. A. Appl. Surf. Sci. 1990, 45, 131–139. doi:10.1016/0169-4332(90)90063-6 The authors acknowledge the financial support from the National Natural Science Foundation of China (Grant No. 21406052), Scientific Research Foundation for Selected Over- seas Chinese Scholars, Ministry of Human Resources and Social Security of China (Grant No. CG2015003002) and the Program for the Outstanding Young Talents of Hebei Province. 23.Fantauzzi, M.; Elsener, B.; Atzei, D.; Rigoldi, A.; Rossi, A. RSC Adv. 23.Fantauzzi, M.; Elsener, B.; Atzei, D.; Rigoldi, A.; Ros 2015, 5, 75953–75963. doi:10.1039/C5RA14915K 23.Fantauzzi, M.; Elsener, B.; Atzei, D.; Rigoldi, A.; Rossi, A 2015, 5, 75953–75963. doi:10.1039/C5RA14915K 24.Moon, J.; An, J.; Sim, U.; Cho, S.-P.; Kang, J.-H.; Chung, C.; Seo, J. H.; Lee, J.; Nam, K. T.; Hong, B. H. Adv. Mater. 2014, 26 3501–3505. doi:10.1002/adma.201306287 24.Moon, J.; An, J.; Sim, U.; Cho, S.-P.; Kang, J.-H.; Chung, C.; Seo, J. H.; Lee, J.; Nam, K. T.; Hong, B. H. Adv. Mater. 2014, 2 3501–3505. doi:10.1002/adma.201306287 25.Chen, C.; Wang, L.; Li, F.; Ling, L. Mater. Chem. Phys. 2014, 146, 531–537. doi:10.1016/j.matchemphys.2014.04.011 Preparation of ZnO@NCNT composite Preparation of ZnO@NCNT composite The ZnO@NCNT composite was synthesized by sol–gel syn- thesis [13,34]. In a typical synthesis, 7.717 g zinc acetate (Zn(CH3COO)2, ≥99%) was dissolved in 260 mL ethanol Table 1: Performance comparison of different electrodes for Li/S batteries. material reversible capacity (mAh·g−1) cycle number current density applied potential range (V) sulfur loading (mg·cm−2) reference MWNT@ZIF-S 380 25 0.1C 1.0–3.0 0.6 [27] Al-ZnO@C/S 544 300 0.5C 1.8–2.6 3.3 [28] S/PPy 503 100 0.1C 1.5–3 4 [26] Fe2O3/S 442.3 100 0.5C 1.0–3.0 0.56 [29] A-TiO2-xNSs-S 610 100 0.1C 1.7–2.8 1.17 [30] Meso-C/S 470.2 300 0.5C 1.7–2.7 2.0 [31] S/NGC 572 100 0.2C 1.7–2.8 3.4 [32] S/INC 702 50 0.1C 1.0–3.0 3.0 [33] S/ZnO@NCNT 665 100 0.2C 1.0–3.0 3.25 this work Table 1: Performance comparison of different electrodes for Li/S batteries. Beilstein J. Nanotechnol. 2018, 9, 1677–1685. 52–55. doi:10.1016/j.matlet.2014.08.115 52–55. doi:10.1016/j.matlet.2014.08.115 5. Qiu, Y.; Li, W.; Zhao, W.; Li, G.; Hou, Y.; Liu, M.; Zhou, L.; Ye, F.; Li, H.; Wei, Z.; Yang, S.; Duan, W.; Ye, Y.; Guo, J.; Zhang, Y. Nano Lett. 2014, 14, 4821. doi:10.1021/nl5020475 30.Wang, H.-C.; Fan, C.-Y.; Zeng, Y.-P.; Zhang, X.-H.; Li, W.-H.; 30.Wang, H.-C.; Fan, C.-Y.; Zeng, Y.-P.; Zhang, X.-H.; Li, W.-H.; Liu, S.-Y.; Sun, H.-Z.; Zhang, J.-P.; Sun, L.-N.; Wu, X.-L. Chem. – Eur. J. 2017, 23, 9666–9673. doi:10.1002/chem.201701580 Liu, S.-Y.; Sun, H.-Z.; Zhang, J.-P.; Sun, L.-N.; Wu, X.-L. hem. – Eur. J. 2017, 23, 9666–9673. doi:10.1002/chem.201701580 6. Xiao, Z.; Yang, Z.; Wang, L.; Nie, H.; Zhong, M.; Lai, Q.; Xu, X.; Zhang, L.; Huang, S. Adv. Mater. 2015, 27, 2891–2898. doi:10.1002/adma.201405637 31.Bao, W.; Su, D.; Zhang, W.; Guo, X.; Wang, G. Adv. Funct. Mater. 2016, 26, 8746–8756. doi:10.1002/adfm.201603704 32.Vinayan, B. P.; Diemant, T.; Lin, X.-M.; Cambaz, M. A.; Golla-Schindler, U.; Kaiser, U.; Behm, R. J.; Fichtner, M. Adv. Mater. Interfaces 2016, 3, 1600372. doi:10.1002/admi.201600372 32.Vinayan, B. P.; Diemant, T.; Lin, X.-M.; Cambaz, M. A.; 7. Gopi, C. V. V. M.; Venkataharitha, M.; Lee, Y.-S.; Kim, H.-J. J. Mater. Chem. A 2016, 4, 8161–8171. doi:10.1039/C6TA02415G Golla-Schindler, U.; Kaiser, U.; Behm, R. J.; Fichtner, M. Adv. Mater. Interfaces 2016, 3, 1600372. doi:10.1002/admi. 8. Rehman, S.; Tang, T.; Ali, Z.; Huang, X.; Hou, Y. Small 2017, 13, 1700087. doi:10.1002/smll.201700087 33.Li, H.; Wang, Z.; Zhang, Y.; Wang, X.; Zhao, Y.; Maximov, M. Y.; Ji, P.; Yin, F. Russ. J. Appl. Chem. 2016, 89, 1336–1340. doi:10.1134/S107042721608019X 9. Rehman, S.; Guo, S.; Hou, Y. Adv. Mater. 2016, 28, 3166. 9. Rehman, S.; Guo, S.; Hou, Y. Adv. Mater. 2016, 28, 3166. doi:10.1002/adma.201670111 doi:10.1134/S107042721608019X References 26.Yin, F.; Liu, X.; Zhang, Y.; Zhao, Y.; Menbayeva, A.; Bakenov, Z.; Wang, X. Solid State Sci. 2017, 66, 44–49. doi:10.1016/j.solidstatesciences.2017.02.009 1. Yuan, G.; Zhao, Y.; Jin, H.; Bakenov, Z. Ionics 2016, 22, 1819–1827. doi:10.1007/s11581-016-1729-7 1. Yuan, G.; Zhao, Y.; Jin, H.; Bakenov, Z. Ionics 2016, 22, 1819–1827. doi:10.1007/s11581-016-1729-7 2. Zhang, Y.; Zhao, Y.; Konarov, A.; Gosselink, D.; Soboleski, H. G.; Chen, P. J. Power Sources 2013, 241, 517–521. doi:10.1016/j.jpowsour.2013.05.005 2. Zhang, Y.; Zhao, Y.; Konarov, A.; Gosselink, D.; Soboleski, H. G.; Chen, P. J. Power Sources 2013, 241, 517–521. doi:10.1016/j.jpowsour.2013.05.005 27.Yue, Y.; Guo, B.; Qiao, Z. A.; Fulvio, P. F.; Chen, J.; Binder, A. J.; Tian, C.; Dai, S. Microporous Mesoporous Mater. 2014, 198, 139–143. doi:10.1016/j.micromeso.2014.07.026 Tian, C.; Dai, S. Microporous Mesoporous Mater. 2014, 198, 139–14 3. Zhang, Z.; Jing, H.-K.; Liu, S.; Li, G.-R.; Gao, X.-P. J. Mater. Chem. A 2015, 3, 6827–6834. doi:10.1039/C4TA07183B 28.Kong, Y.; Luo, J.; Jin, C.; Yuan, H.; Sheng, O.; Zhang, L.; Fang, C.; Zhang, W.; Huang, H.; Xia, Y.; Liang, C.; Zhang, J.; Gan, Y.; Tao, W. Nano Res. 2018, 11, 477–489. doi:10.1007/s12274-017-1655-7 ang, W.; Huang, H.; Xia, Y.; Liang, C.; Zhang, J.; Gan, Y.; Tao, W. 4. Sun, Q.; Yadegari, H.; Banis, M. N.; Liu, J.; Xiao, B.; Wang, B.; Lawes, S.; Li, X.; Li, R.; Sun, X. Nano Energy 2015, 12, 698–708. doi:10.1016/j.nanoen.2015.01.018 29.Zhao, C.; Shen, C.; Xin, F.; Sun, Z.; Han, W. Mater. Lett. 2014, 137, 52–55. doi:10.1016/j.matlet.2014.08.115 9.Zhao, C.; Shen, C.; Xin, F.; Sun, Z.; Han, W. Mater. Lett. 2014, 13 doi:10.1002/adma.201670111 34.Li, H.; Wei, Y.; Zhang, Y.; Zhang, C.; Wang, G.; Zhao, Y.; Yin, F.; Bakenov, Z. Ceram. Int. 2016, 42, 12371–12377. doi:10.1016/j.ceramint.2016.05.010 10.Li, Y.; Cai, Q.; Lei, W.; Li, Q.; Xiang, P.; Gao, B.; Huo, K.; Chu, P. K. ACS Appl. Mater. Interfaces 2016, 8, 23784–23792. doi:10.1021/acsami.6b09479 Bakenov, Z. Ceram. Int. 2016, 42, 12371–12377. 11.Li, Z.; Zhang, J.; Lou, X. W. Angew. Chem., Int. Ed. 2015, 54, 12886–12890. doi:10.1002/anie.201506972 12.Zhou, W.; Xiao, X.; Cai, M.; Yang, L. Nano Lett. 2014, 14, 5250. doi:10.1021/nl502238b 1684 Beilstein J. Nanotechnol. 2018, 9, 1677–1685. License and Terms This is an Open Access article under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. The license is subject to the Beilstein Journal of Nanotechnology terms and conditions: (https://www.beilstein-journals.org/bjnano) The definitive version of this article is the electronic one which can be found at: doi:10.3762/bjnano.9.159 Beilstein J. Nanotechnol. 2018, 9, 1677–1685. License and Terms 1685
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The level of knowledge and awareness of teachers in the province of Kayseri for type 1 diabetes mellitus, the adequacy of schools in diabetes mellitus management
Health sciences quarterly
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Health Sciences Quarterly, Volume: 4 / Issue: 1 / Year: 2024 Volume: 4 Issue: 1 2024 E-ISSN: 2791-6022 https://journals.gen.tr/jsp Received: 2023-07-31 Accepted: 2023-11-08 Health Sciences Quarterly, Volume: 4 / Issue: 1 / Year: 2024 Volume: 4 Issue: 1 2024 E-ISSN: 2791-6022 https://journals.gen.tr/jsp Received: 2023-07-31 Accepted: 2023-11-08 ORIGINAL ARTICLE The level of knowledge and awareness of teachers in the province of Kayseri for type 1 diabetes mellitus, the adequacy of schools in diabetes mellitus management Serkan Bilge Koca Division of Pediatric Endocrinology, Department of Pediatrics, Kayseri City Hospital, Health Sciences University. Kayseri / Türkiye Citation: Koca SB. The level of knowledge and awareness of teachers in the province of Kayseri for type 1 diabetes mellitus, the adequacy of schools in diabetes mellitus management. Health Sci Q. 2024;4(1):1-9. https://doi.org/10.26900/hsq.2121 Corresponding Author: Serkan Bilge Koca Email: kocaserkanbilge@yahoo.com.tr Abstract Type 1 Diabetes Mellitus (T1DM) is an important chronic health problem of childhood. Cooperation of parents and teachers is necessary in diabetes management. In our cross-sectional study, a 3-part questionnaire evaluating the educational status of teachers for T1DM was used. Questions consisting of 4 factors were asked about the level of knowledge, awareness, living with diabetes, and school life with diabetes. In scoring the answers given to the questions in the first part, each correct answer was recorded as +1 point, each incorrect answer as -1 point, and ‘I have no idea’ as 0 points. The total score ranged from -21 to +21 points. Those who scored 11 points or more were considered to have a sufficient level of knowledge and awareness about T1DM. The validity of the first part of the scale, KMO and Bartlett’s test score, was found to be 0.94. The reliability of the first part of the scale, Cronbach’s alpha value, was 0.91. The mean score of the first part of the scale was 9.3±5.1, and range was between -3 to 19 points. In our study, the number of those who scored 11 points or more in the questions measuring the level of knowledge and awareness about diabetes were 268 (46.4%). We observed that the level of knowledge and awareness about diabetes in schools in our province is not sufficient. Keywords: Diabetes mellitus, knowledge, school, teacher, type 1 diabetes Citation: Koca SB. The level of knowledge and awareness of teachers in the province of Kayseri for type 1 diabetes mellitus, the adequacy of schools in diabetes mellitus management. Health Sci Q. 2024;4(1):1-9. https://doi.org/10.26900/hsq.2121 This work is licensed under a Creative Commons Attribution 4.0 International License. Corresponding Author: Serkan Bilge Koca Email: kocaserkanbilge@yahoo.com.tr Corresponding Author: Serkan Bilge Koca Email: kocaserkanbilge@yahoo.com.tr 1 Koca and nurses in schools were determined. Teachers were asked to attend the training and take part in diabetes management. In a study that audited the effectiveness of the “Diabetes Program at School” and evaluated the knowledge and attitude scores of teachers throughout Turkey, the lowest scores were found in Central Anatolia and Southeastern Anatolia regions, and it was determined that the level of knowledge and awareness of school staff about T1DM showed regional differences [4]. Abstract In our study, we evaluated the knowledge level and awareness of teachers in public and private schools operating under the Provincial Directorate of National Education in the province of our city in the Central Anatolian region, and the adequacy of the school equipment, with a scale consisting of 3 parts. Introduction Type 1 Diabetes Mellitus (T1DM) is an important chronic health problem of childhood. Many countries around the world have clear legal guidelines to support chronically ill children, especially diabetics, in the education system [1]. In a study published in Türkiye in 2017, the national prevalence and incidence of T1DM were found to be 0.75/1000 and 108/100.000, respectively [2]. Support from family, doctor, nurse, dietitian, and psychologist is of great importance in childhood diabetes management. Depending on the age, some responsibilities can be given to the child. With the school age, the time spent in the home environment decreases, and a large part of the day is spent at school. Mostly parents, sometimes school nurses and teachers support the child who continues his or her diabetes management and daily life with blood sugar monitoring, insulin administration, nutrition, and sports activities. ‘Diabetes Prevention and Control Program in Türkiye’ is a program that has been carried out since 2010 to prevent the development of type 2 diabetes mellitus (T2DM), early detection of T1DM and T2DM, and improve diabetes care. ‘Childhood Diabetes Control Program’ is included as a separate subject in this program. As part of this program, with the cooperation of the Ministry of Health and the Ministry of National Education and with the contributions of the Turkish Pediatric Endocrinology and Diabetes Association, “Diabetes Program at School” was started and this program continues actively throughout Türkiye [3]. The main purposes of this program are to increase the level of knowledge and awareness about T1DM in schools and teachers, to provide early detection of diabetes mellitus, to improve diabetes management, to reduce the frequency of diabetic ketoacidosis complications, and to prevent the development of obesity by developing healthy eating attitudes. ‘A guide to school exams for children with diabetes’, ‘Individualized Diabetes Management Plan’ (DMP), and ‘School Action Plan’ were prepared and sent to schools. In October 2020, a directive was published by the Turkish Ministry of National Education and the duties and responsibilities of families, teachers, Study Design The study was approved by the clinical research ethics committee of Kayseri City Training and Research Hospital (2022-607). Survey records were obtained online between 30 May and 30 June 2022. Research ethical principles were conducted in accordance with the Declaration of Helsinki. In our cross-sectional study, a 3-part questionnaire evaluating the educational status of teachers for T1DM was used. The scale consisted of 43 questions. In the first section, questions consisting of 4 factors were asked about the level of knowledge, awareness, living with diabetes, and school life with diabetes. The answers were determined as ‘True’, ‘Wrong’, and ‘No idea’. In scoring the answers given to the questions in the first part, each correct answer was recorded as +1 point, each incorrect answer as -1 point, and ‘I have no idea’ as 0 points. The total score ranged from -21 to +21 points. Those who scored 11 points or more (those whose scores are above average) were considered to have a sufficient level of knowledge and awareness about T1DM. In the second part, multiple choice questions measuring the level of direct knowledge of the teachers about the treatments used in diabetes management were asked and the rate of choosing the correct answer from 4 options was evaluated. In the third part, questions were asked to measure the school’s responsibilities and equipment adequacy for diabetes care. The 2 Health Sciences Quarterly, Volume: 4 / Issue: 1 / Year: 2024 answers were determined as ‘Yes’, ‘No’, and ‘No idea’. Statement 2 and Statement 9, which are among the items in this section, were excluded from the validity analysis due to their low factor loads. The mean score of the answers given to the questions in the first part of the scale was 9.3±5.1 and the range was between -3 and 19 points. In our study, the number of those who scored 11 points or more in the questions measuring the level of knowledge and awareness about diabetes was 268 (46.4%). Questions containing general information about T1DM treatment management are shown in Table 2. The study was approved by the clinical research ethics committee. The date of approval is March 10, 2022, and the number is 607. Statistical Analysis The validity of the first part of the scale was evaluated by factor analysis and after the analysis, 2 statements were removed from the scale, and the final KMO and Bartlett’s test score were found to be 0.94. It was statistically significant. (p<0.001). The questions in the scale were collected in 4 factors and the cumulative variance was 53.7%. The questions in the first part of the scale were also evaluated with reliability analysis. Cronbach’s alpha value was 0.91. As such, the scale was found to be a valid and reliable scale. The answers given by the individuals to the questions in the second and third parts (categorical variables) are shown as numbers and percentages. According to the answers given to the questions in Table 3, the scores obtained by the participants in the first part were also compared by ANOVA analysis and Bonferroni as a Post-Hoc method. A p-value less than 0.05 was considered statistically significant. Study Design The conditions of the Ministry of National Education for scientific research were fulfilled, and a questionnaire form was created to be answered electronically, with the approval of the Provincial Directorate of National Education and the Provincial Health Directorate. This survey was shared for around 20,700 teachers working in the province. As a random method, educators were asked to fill out the surveys on a voluntary basis. The participation rate in the survey was around 3%. The questions related to T1DM management and equipment adequacy at school are shown in Table 3. According to the answers given to the questions in Table 3, the scores obtained by the participants in the first part were also compared. The scores of those who answered ‘‘Yes’’ (first part score 11.5±4.6) to the question of whether there was anyone who had received education on diabetes at school were significantly higher than those who answered ‘‘I have no idea’’ (first part score 9±5.2; p= 0.001) and those who answered ‘‘No’’ (first part score 9.25±5.2; p= 0.008). The scores of those who answered ‘‘Yes’’ (first part score 10.6±5.0) to the question of whether there is a child with diabetes in the institution I work in/ around me were significantly higher than those who answered ‘‘I have no idea’’ (first part score 8.2±5.5; p< 0.001) and those who answered ‘‘No’’ (first part score 9.4±4.9; p= 0.04). Results A total of 577 teachers, 320 (55.5%) female, and 257 (44.5%) male, participated in our study. The distribution of teachers by age range was as follows: 29 teachers of aged 20-29 (5%), 240 teachers of aged 30-39 (41.6%), 190 teachers of aged 40-49 (32.9%), 106 teachers of aged 50-59 (18.4%), and 12 teachers of aged over 60 (2.1%). The responses given to the statements evaluating the level of knowledge, awareness, daily life, and school life about diabetes were shown in Table 1. 3 Koca The responses given to the statements evaluated the level of knowledge, awareness, daily life, and school life about diabetes. b e . e espo ses g ve to t e state e ts eva uated t e eve o ow edge, awa e ess, da y e, nd school life about diabetes. life about diabetes. Items Answers (number/percentage) Correct Wrong No idea 1 The most common diabetes in the world is T1DM. 213 (36.9%) 104 (18%) 260 (45.1%) 2 T1DM is caused by consuming too many sugary (carbohydrate) foods. 184 (31.9%) 256 (44.4%) 137 (23.7%) 3 The most common diabetes in childhood is T1DM 282 (48.9%) 33 (5.7%) 262 (45.4%) 4 A child with T1DM can eat whatever they want like a healthy child. 32 (5.5%) 446 (77.3%) 99 (17.2%) 5 Children with T1DM should not participate in sports/physical education activities. 28 (4.9%) 419 (72.6%) 130 (22.5%) 6 When the blood glucose (sugar) level drops (hypoglycemia) in children with T1DM, some symptoms may occur. 396 (68.6%) 7 (1.2%) 174 (30.2%) 7 T1DM should not effect the child's school life (participation in class, socialization). 250 (43.3%) 216 (37.4%) 111 (19.2%) 8 Drinking a lot of water, frequent urination and weight loss are the findings that can be observed at the time of diagnosis in T1DM. 435 (75.4%) 17 (2.9%) 125 (21.7%) 9 T1DM can resolve spontaneously over time. 34 (5.9%) 367 (63.6%) 176 (30.5%) 10 There is no individualized treatment plan (nutrition/insulin/exercise) specific to every child with T1DM. 39 (6.8%) 406 (70.4%) 132 (22.9%) 11 All children with T1DM can manage their treatment plan and do not need adult support. 53 (9.2%) 408 (70.7%) 116 (20.1%) 12 Changes in the blood glucose (sugar) level (hypoglycemia/hyperglycemia) of a child with T1DM may effect exam success, school performance, and attendance at school. tions: T1DM: type 1 diabetes mellitus. The correct answers are shown in bold. Abbreviations: T1DM: type 1 diabetes mellitus. The correct answers are shown in bold. Results 393 (68.1%) 57 (9.9%) 127 (22%) 13 A child with T1DM should not be allowed to want something to eat during class (citing blood sugar). 69 (12%) 403 (69.8%) 105 (18.2%) 14 Findings such as weakness, fatigue, pallor, sweating, and confusion are observed when blood glucose level decreases (<70 mg/dL). 395 (68.5%) 8 (1.4%) 174 (30.2%) 15 The family and the child are responsible for the problems (hypoglycemia/hyperglycemia) that the child with T1DM may experience at school. It is not the responsibility of the school and the teacher. 48 (8.3%) 390 (67.6%) 139 (24.1%) 16 The child with T1DM has special needs and therefore, peer bullying, neglect, and abuse are more common. 237 (41.1%) 129 (22.4%) 211 (36.6%) 17 If T1DM is not treated correctly and appropriately, it can lead to eye, kidney, cardiovascular, and vascular health problems. 438 (75.9%) 7 (1.2%) 132 (22.9%) 18 Children with T1DM can also live healthy years, be successful in their lives, and achieve good academic standing. 475 (82.3%) 5 (0.9%) 97 (16.8%) 19 A child with T1DM can measure blood glucose without piercing the fingertip (measurement with a glucometer) and her family can monitor it remotely. 244 (42.3%) 44 (7.6%) 289 (50.1%) 20 A child with T1DM cannot do professional sports or become a licensed athlete. 34 (5.9%) 268 (46.4%) 275 (47.7%) 21 The activities of a child with T1DM in the school environment and the social environment can effect the blood glucose (sugar) level. 310 (53.7%) 73 (12.7%) 194 (33.6%) 22 The target blood glucose (sugar) targets of a child with T1DM do not change throughout life. 38 (6.6%) 316 (54.8%) 223 (38.6%) 23 A child with T1DM should be allowed to take his or her needs such as simple carbohydrates (sugar, juice), insulin, blood glucose meter, dipstick, glucagon, and insulin pump when taking the exam. 436 (75.6%) 8 (1.4%) 133 (23.1%) Items 2 and 9 were excluded from the validity analysis due to their low factor loads. 4 Health Sciences Quarterly, Volume: 4 / Issue: 1 / Year: 2024 s or become a 34 (5.9%) 268 (46.4%) 275 (47.7%) vironment and (sugar) level. 310 (53.7%) 73 (12.7%) 194 (33.6%) with T1DM do 38 (6.6%) 316 (54.8%) 223 (38.6%) her needs such blood glucose king the exam. 436 (75.6%) 8 (1.4%) 133 (23.1%) ue to their low factor loads. correct answers are shown in bold. 20 A c licen Discussion 21 The activities of a child with T1DM in the scho the social environment can effect the blood glu 22 The target blood glucose (sugar) targets of a c not change throughout life. 23 A child with T1DM should be allowed to take h as simple carbohydrates (sugar, juice), insu meter, dipstick, glucagon, and insulin pump wh Items 2 and 9 were excluded from the validity analy Abbreviations: T1DM: type 1 diabetes mellitus. Statement 2 and Statement 9, which are among th analysis due to their low factor loads. The mean part of the scale was 9.3±5.1 and the range was those who scored 11 points or more in the quest about diabetes was 268 (46.4%). Questions co management are shown in Table 2. In our study, we evaluated teachers’ awareness and knowledge about T1DM with a valid and reliable questionnaire. As far as we know, it is the first study conducted in our province. In our country, as in some countries, guidelines for diabetes management at school have been published. There is an increase in the incidence and prevalence of childhood diabetes in the world. In our study, the level of knowledge, awareness, and the place of life with diabetes in school life was evaluated by the teachers with an appropriate questionnaire and almost half of the participants could answer almost half of the questions correctly (46.4%). In a study conducted with school staff, although 80% of them stated that their experience is sufficient Table 2. Questions containing general information about type 1 diabetes treatment management. Table 2. Questions containing general information about type 1 diabetes treatment management. Table 2. Questions containing general information about type 1 diabetes treatment management. Table 2. Questions containing general information about type 1 diabetes treatment management. Questions Answers (number/percentage) What is the blood glucose level of a child with T1DM usually like at the time of diagnosis? I am not sure (284, 49.2%) Within normal ranges (20, 3.5%) Low (72, 12.5%) High (201, 34.8%) How does insulin effect blood glucose (sugar) levels? I am not sure (186, 32.2%) Does not effect (6, 1%) Level down (271, 47%) Level up (114, 19.8%) In which way/ways can insulin be administered? I am not sure (130, 22.5%) Oral pill (7, 1.2%) Oral pill and injection (into the skin) (269, 46.6%) Injection and pump therapy (171, 29.6%) What can be used in the treatment of T1DM? Results ms in this section, were excluded from the validity e of the answers given to the questions in the first ween -3 and 19 points. In our study, the number of measuring the level of knowledge and awareness ning general information about T1DM treatment for the management of T1DM in children and adolescents, 90% of them can work comfortably in schools where children with T1DM are present, and only 47.1% of the school staff are observed to be aware of the methods and practices used in diabetes management [5]. In diabetes management, family, child, and school should be in coordination. Psychological problems (depression, eating disorders) are more common in children with T1DM. The prevalence of depression in adolescent diabetics is 2-3 times higher than in healthy individuals [6]. In addition, the fear of hypoglycemia can be observed in the family or teachers. Problems attending school and staying at home due to fear of hypoglycemia are more common in children with diabetes. These conditions can cause problems such as making 20 A c licen Discussion In our study, it was questioned whether there were any children with diabetes in the school and this rate was I am not sure (258, 44.7%) Mixed carbs (sandwich, cake) (19, 3.3%) le carbohydrates (sugar cubes, fruit juice, etc…) (269, 46.6%) Insulin (31, 5.4%) correct answers are shown in bold. ipment adequacy at school are shown in Table 3. able 3, the scores obtained by the participants in who answered ‘‘Yes’’ (first part score 11.5±4.6) ad received education on diabetes at school were e no idea’’ (first part score 9±5.2; p= 0.001) and 2; p= 0.008). The scores of those who answered of whether there is a child with diabetes in the gher than those who answered ‘‘I have no idea’’ wered ‘‘No’’ (first part score 9 4±4 9; p= 0 04) stated to be 28.9%. The presence of an educator who received training on diabetes at school was 11.3%, and the status of being a nurse at school was 3.8% in our questionnaire. In our study, the status of the child with diabetes receiving support from the school/teacher in cases such as insulin administration and additional meal adjustment was found to be around 23.2%, and this rate was observed to be below 20% in a study in which the sub-dimensions of support were also questioned throughout the country (4). In a study conducted in Istanbul, it was observed that more than 80% of the schools did not have nurses, and 50% of the educators were not aware of the emergency treatment of hypoglycemia and had difficulties in administering insulin at school [10]. Although having a nurse at school has an advantage in diabetes management, different results have been observed in studies conducted Table 3. Questions related to type 1 diabetes management and adequacy of equipment in school. Table 3. Questions related to type 1 diabetes management and adequacy of equipment in school. Questions Answers Yes No No idea Is there anyone in school who has been trained in diabetes? 65 (11.3%) 167 (28.9%) 345 (59.8%) Is there a nurse at the school? 22 (3.8%) 539 (93.4%) 16 (2.8%) Is lunch available for students who are at school all day? 111 (19.2%) 429 (74.4%) 37 (6.4%) Is there an area/room where the child with T1DM can administer the insulin injection? 20 A c licen Discussion Surgery (6, 1%) Oral pill (24, 4.2%) Oral pill and insulin (379, 65.7%) Insulin (168, 29.1%) What should a child with low blood glucose (sugar) levels do? I am not sure (193, 33.4%) Consuming sugar (270, 46.8%) Consuming protein (13, 2.3%) Insulin (101, 17.5%) What should be done in case of confusion, fainting, or seizure that can be observed in a child with T1DM? I am not sure (320, 55.5%) Oral sugar should be given (29, 5%) Glucagon injection should be given (116, 20.1%) Insulin should be administered (112, 19.4%) What should be done if the blood glucose (sugar) level of a child with T1DM is below 70 mg/dL? I am not sure (258, 44.7%) Mixed carbs (sandwich, cake) (19, 3.3%) Simple carbohydrates (sugar cubes, fruit juice, etc…) (269, 46.6%) Insulin (31, 5.4%) Abbreviations: T1DM: type 1 diabetes mellitus. The correct answers are shown in bold. Abbreviations: T1DM: type 1 diabetes mellitus. The correct answers are shown in bold. 5 Koca What should be done if the blood glucose (sugar) level of a child with T1DM is below 70 mg/dL? S Abbreviations: T1DM: type 1 diabetes mellitus. T The questions related to T1DM management and According to the answers given to the questions the first part were also compared. The scores of th to the question of whether there was anyone wh significantly higher than those who answered ‘‘I those who answered ‘‘No’’ (first part score 9.25 ‘‘Yes’’ (first part score 10.6±5.0) to the questi institution I work in/around me were significantl (fi ) d h h insufficient insulin or skipping insulin doses. In long-term studies, early parental responsibility for diabetes management was associated with poor adherence to treatment and poor glycemic control. Therefore, regardless of age, diabetes management mostly depends on the problem- solving skills of the parents [7]. Problems such as socioeconomic inadequacies, inability to reach a healthy meal, low parental education level, insufficient school infrastructure or lack of knowledge and experience of the educator at school, problems in attending school, and frequent school changes also cause weakening of academic achievement. Hypoglycemia or hyperglycemia of a child with T1DM during stress and exam periods may also affect their cognitive abilities [8,9]. 20 A c licen Discussion Some of the important results of our study are that most of the teachers do not know the practices to be done for low blood sugar, and they are not aware of the effect of insulin and the way it is applied. When asked what should be done if the blood glucose (sugar) level of a child with T1DM is below 70 mg/dL, 5.4% of the participants answered ‘‘insulin’’. Similarly, 19.4% of the participants answered ‘‘insulin’’ when asked what to do in case of confusion, fainting, or seizures that can be observed in a child with T1DM. It is understood from these results that more emphasis should be placed on awareness and management of hypoglycemia. While some of the participants answered ‘‘I am not sure’’ or oral pills to the question of which way insulin can be administered, 29.6% chose injection or pump therapy as the correct answer. As we revealed in our study, having a child with diabetes at school and having received education on diabetes significantly contribute to the level of knowledge and awareness in diabetes management [13]. We did not question the practical applications of teachers separately, but the literature revealed that teachers should take a more active role in blood glucose measurement, insulin administration, and intervention of A review of diabetes care in the United States published in 2022 found that around 20% of schools did not have locking refrigerators for storing glucagon, insulin, or syringes [16]. The rate of students not being allowed to administer insulin in the classroom is around 79% [16,17]. The rates of schools where students were not allowed to check their blood sugar in the classroom were observed at a rate of 51% [16,18] to 52% [16,17], and the rate of not allowing insulin administration in the classroom was observed at around 79% [16,17]. The rate of being asked to go to school health offices for procedures such as insulin administration or blood sugar control was observed at a rate of 26.7% [16,19]. Our study had some limitations. Firstly, it has a relatively small sample size, and the participation rate among educators was around 3%. Secondly, whether the schools are private or public, the number of schools, and the teachers expertise were not questioned. Thirdly, the questionnaires were obtained through an online system, not face-to-face. 20 A c licen Discussion In the literature, there are limited number of survey studies evaluating the knowledge level of teachers about diabetes [20]. More research is needed to make the scales universally usable due to regional and educational differences and limitations such as the intelligibility of the questions. As we revealed in our study, having a child with diabetes at school and having received education on diabetes significantly contribute to the level of knowledge and awareness in diabetes management [13]. We did not question the practical applications of teachers separately, but the literature revealed that teachers should take a more active role in blood glucose measurement, insulin administration, and intervention of hypoglycemia, especially in young children [14,15]. 20 A c licen Discussion 166 (28.8%) 310 (53.7%) 101 (17.5%) Does the child with T1DM have a cabinet for insulin, glucagon, and spare measuring instruments, preferably with a cold storage feature? 239 (41.4%) 228 (39.5%) 110 (19.1%) Does the child with T1DM receive support from the school/trainer in situations such as insulin administration or additional meal adjustments? 134 (23.2%) 157 (27.2%) 286 (49.6%) Does the child with T1DM have the opportunity to measure blood sugar and administer insulin in the classroom? 197 (34.1%) 154 (26.7%) 226 (39.2%) When a child with T1DM faints, the first thing that comes to mind is low blood sugar (hypoglycemia). In this case, urgent intervention is required, the first thing to do is to turn the child on his/her side and administer a glucagon injection (intramuscular) and measure blood sugar at the same time. In this case, is the nearest teacher responsible for making this application? 183 (31.7%) 83 (14.4%) 311 (53.9%) There is a child with T1DM in the institution where I work. 167 (28.9%) 230 (39.9%) 180 (31.2%) Abbreviations: T1DM: type 1 diabetes mellitus. Abbreviations: T1DM: type 1 diabetes mellitus. Questions related to type 1 diabetes management and adequacy of equipment in school. uestions related to type 1 diabetes management and adequacy of equipment in school. management and adequacy of equipment in school. nagement and adequacy of equipment in school. diabetes mellitus. Abbreviations: T1DM: type 1 diabetes mellitus. 6 Health Sciences Quarterly, Volume: 4 / Issue: 1 / Year: 2024 measuring instruments, preferably with a cold storage feature?’’ The answer to the question was ‘‘No’’ by 39.5%. in schools with nurses in the literature. The experience level of the nurse and whether she/he has received any previous education on diabetes are important [11]. These results show us that diabetes education should be repeated at regular intervals. It has been suggested to include these topics in school or university curricula [12]. In our research, it was observed that there were no nurses in 93.4% of the schools, no meals were provided in the school in 74.4%, and no place was arranged for insulin administration in 53.7%. When asked whether there is a lunch for students who are at school all day, 19.2% of the participants answered ‘‘Yes’’. This rate was found to be 40% in another study conducted in Turkey [4]. Funding appraisals of maternal involvement in coping with diabetes: enhancing our understanding of adherence, metabolic control, and quality of life across adolescence. J Pediatr Psychol. 2005;30(2):167-78. doi: 10.1093/jpepsy/jsi004. appraisals of maternal involvement in coping with diabetes: enhancing our understanding of adherence, metabolic control, and quality of life across adolescence. J Pediatr Psychol. 2005;30(2):167-78. doi: 10.1093/jpepsy/jsi004. The author did not receive any financial support from any public or private source for this study. Conclusion As a result, we observed that the level of knowledge and awareness about diabetes in schools in our city is not sufficient. We think that in diabetes education, the management of hypoglycemia should be handled more carefully, teachers should be encouraged about practical applications, and awareness should be increased. It is necessary to make up for the deficiencies of schools following children with diabetes and to re-train teachers at regular intervals to keep their knowledge up-to-date. In our research, “Is there an area/room where the child with T1DM can administer the insulin injection?’’ The answer to the question was ‘‘No’’ by 53.7%. ‘‘Does the child with T1DM have a cabinet for insulin, glucagon, and spare 7 Koca Koca Conflict of interest The author declares that there is no conflict of interest. 8. Blackman JD, Towle VL, Sturis J, Lewis GF, Spire JP, Polonsky KS. Hypoglycemic thresholds for cognitive dysfunction in IDDM. Diabetes. 1992;41(3):392-9. doi: 10.2337/diab.41.3.392. 8. 9. Cox DJ, Kovatchev BP, Gonder-Frederick LA, Summers KH, McCall A, Grimm KJ, et al. Relationships between hyperglycemia and cognitive performance among adults with type 1 and type 2 diabetes. Diabetes Care. 2005;28(1):71-7. doi: 10.2337/diacare.28.1.71. 7. Wiebe DJ, Berg CA, Korbel C, Palmer DL, Beveridge RM, Upchurch R, et al. Children’s 16. An R, Li D, Cole M, Park K, Lyon AR, References 1. Lange K, Jackson C, Deeb L. Diabetes care in schools--the disturbing facts. Pediatr Diabetes. 2009;10(13): 28-36. doi: 10.1111/j.1399-5448.2009.00613.x. 10. Akesen E, Turan S, Güran T, Atay Z, Save D, Bereket A. Prevalence of type 1 diabetes mellitus in 6-18-yr-old school children living in Istanbul, Turkey. Pediatr Diabetes. 2011;12(6):567-71. doi: 10.1111/j.1399- 5448.2010.00744.x. 2. Yeşilkaya E, Cinaz P, Andıran N, Bideci A, Hatun Ş, Sarı E, et al. First report on the nationwide incidence and prevalence of Type 1 diabetes among children in Turkey. Diabet Med. 2017;34(3):405-10. doi: 10.1111/ dme.13063. 11. Kobos E, Imiela J, Kryczka T, Szewczyk A, Knoff B. Actual and perceived knowledge of type 1 diabetes mellitus among school nurses. Nurse Educ Today. 2020;87:104304. doi: 10.1016/j.nedt.2019.104304. 3. Hatun Ş. Diabetes program at schools in Turkey. J Clin Res Pediatr Endocrinol. 2012;4(2):114-5. doi: 10.4274/jcrpe.516. 4. Gökçe T, Sakarya S, Muradoğlu S, Mutlu GY, Can E, Cemhan K, et al. An evaluation of the knowledge and attitudes of school staff related to diabetes care at school: The 10th year of the “diabetes program at school” in Turkey. Pediatr Diabetes. 2021;22(2):233-240. doi: 10.1111/pedi.13157. 12. Januszczyk RL, Staples HE, Mellor D. Knowledge and awareness of type 1 diabetes among primary school initial teacher trainees. J. Diabetes Nurs. 2016;20(8):280-4. y doi: 10.1111/pedi.13157. 13. Gutzweiler RF, Neese M, In-Albon T. Teachers’ perspectives on children with type 1 diabetes in German kindergartens and schools. Diabetes Spectr. 2020;33(2):201-9. doi: 10.2337/ds19-0054. 5. Schwartz FL, Denham S, Heh V, Wapner A, Shubrook J. Experiences of children and adolescents with type 1 diabetes in school: Survey of children, parents, and schools. Diabetes Spectr. 2010;23:47-55. doi: 10.2337/ diaspect.23.1.47. 14. Nabors L, Lehmkuhl H, Christos N, Andreone TL. Children with diabetes: perceptions of supports for self-management at school. J Sch Health. 2003;73(6):216-21. doi: 10.1111/j.1746-1561.2003.tb06563.x. 6. Grey M, Boland EA, Davidson M, Li J, Tamborlane WV. Coping skills training for youth with diabetes mellitus has long-lasting effects on metabolic control and quality of life. J Pediatr. 2000;137(1):107-13. doi: 10.1067/mpd.2000.106568. 15. Marks A, Wilson V, Crisp J. The management of type 1 diabetes in Australian primary schools. Issues Compr Pediatr Nurs. 2014;37(3):168- 82. doi: 10.3109/01460862.2014.932860. 7. Wiebe DJ, Berg CA, Korbel C, Palmer DL, Beveridge RM, Upchurch R, et al. Children’s 16. An R, Li D, Cole M, Park K, Lyon AR, 8 Health Sciences Quarterly, Volume: 4 / Issue: 1 / Year: 2024 White NH. References Implementation of school diabetes care in the United States: A scoping review. J Sch Nurs. 2022;38(1):61-73. doi: 10.1177/10598405211026328. 17. Stefanowicz A, Stefanowicz J. The role of a school nurse in the care of a child with diabetes mellitus type 1 - the perspectives of patients and their parents: Literature review. Zdr Varst. 2018;57(3):166-74. doi: 10.2478/ sjph-2018-0021. 18. Williams LF, Russ M, Perdue BJ. Exploration of school nurses’ perception of self-efficacy in providing care and education to children with type 1 diabetes mellitus. J Natl Black Nurses Assoc. 2019;30(2):34-7. 19. Castelli DM, Goss D, Scherer J, Chapman- Novakofski K. Healthy outcomes for teens project: diabetes prevention through distributed interactive learning. Diabetes Technol Ther. 2011;13(3):359-64. doi: 10.1089/ dia.2010.0125. 20. Gutiérrez-Manzanedo JV, Carral-San Laureano F, Moreno-Vides P, de Castro- Maqueda G, Fernández-Santos JR, Ponce- González JG. Teachers’ knowledge about type 1 diabetes in south of Spain public schools. Diabetes Res Clin Pract. 2018;143:140-5. doi: 10.1016/j.diabres.2018.07.013. 9
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THE LEGAL RESPONSIBILITY OF THE PHYSICIAN FOR THE UNBORN CHILD.CHAIRMAN'S ADDRESS IN THE SECTION ON OBSTETRICS AND DISEASES OF WOMEN, AT THE FIFTY-SEVENTH ANNUAL SESSION OF THE AMERICAN MEDICAL ASSOCIATION. BOSTON, 1906.
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INTRODUCTORY. All physicians, as well as other biologists, must regard the child in the womb as much a human being while still in the womb as after its expulsion. Although de- pendent on its mother for nourishment and for protec- tion from injury and cold, it is still a living being and as much an independent existence as, for example, an intestinal parasite which depends on its host for pro- tection and nourishment. That it lacks some of the functions of the individual ex utero, for example, the respiratory does not disprove its independence or its human nature. The infant also lacks functions that are possessed by the adult. The self-conscience of the fetus is only in abeyance because not aroused. The embryo or fetus is then to the biologist a separate human individual and not a pars viscerum like the ovary or the appendix. Since the last session of the Association in Portland, our Section has lost by death two of its Ex-chairmen, Drs. Dudley and Dunning, both of whom were members of the Executive Committee of the Section. Dr. Augustus Palmer Dudley was born at Phillips- burg, Me., July 4, 1853, and died in Liverpool, England, July, 15, 1905, of tuberculosis, at the age of 53. After completing a high school course he served an apprentice- ship in an iron and steel manufactory, where he became a skilled mechanic. Then he began the study of medi- cine in the office of Dr. Seth Gordon and graduated at the Dartmouth Medical School, in 1877. After practic- ing four years in Portland, Me., he took the course of an interne in the Woman's Hospital, of New York. After a short service as assistant surgeon in the Woman's Hospital, in San Francisco, he returned to New York in 1884; this city was his home until his death. During this period he was Professor of Gynecology in the Post- graduate Medical School and in the Dartmouth Medical School and was connected with several hospitals. appendix. We must regard this human being as just as inde- pendent at the beginning of its intrauterine life as after it has reached a stage where it can live outside of the uterus. THE LEGAL RESPONSIBILITY OF THE PHY- SICIAN FOR THE UNBORN CHILD. CHAIRMAN'S ADDRESS IN THE SECTION ON OBSTETRICS AND DISEASES OF WOMEN, AT THE FIFTY-SEVENTH ANNUAL SESSION OF THE AMERICAN MEDICAL ASSOCIATION. BOSTON, 1906. always In the name of this Section I desire to express here the highest appreciation for the earnest and faithful work of these men who have been our worthy leaders, and the deepest and most sorrowful regret for their loss. INTRODUCTORY. The old legal distinction between a fetus animaius and inanimatus has, of course, no biologic foundation, although the statutes of certain states give a kind of authority for the perpetuation of these terms which are now in reality meaningless. The preception by the mother of fetal movements does not prove or dis- prove the life of the child any more than would a lack of consciousness of movements of other parasites which exist in her body disprove their existence. Like- wise, there is no biologic basis for the ancient legal dis- tinction which gave different vital and human attri- butes on the fetus formahts and the fetus informatus. hospitals. Dr. Dudley was a skillful operator and a successful teacher. He also made many and important original con- tributions to the literature of his specialty, the most im- portant of which were his papers on "Conservative Treatment of the Uterine Appendages." He was a Fellow of the American Gynecological Society, the Brit- ish Gynecological Society and a member of the state and local societies, as well as the American Medical As- sociation. He was also a very active member of the International Congress of Obstetrics and Gynecology and did much for it as the American secretary. Dr. Dudley left a wife and two daughters. He was not only a good, physician and a good teacher, but he was also a good citizen and a good fellow, kind to all, loved by all who knew him, a most devoted husband and father. His social qualities were characteristic. THE LEGAL RESPONSIBILITY OF THE PHY- SICIAN FOR THE UNBORN CHILD. CHAIRMAN'S ADDRESS IN THE SECTION ON OBSTETRICS AND DISEASES OF WOMEN, AT THE FIFTY-SEVENTH ANNUAL SESSION OF THE AMERICAN MEDICAL ASSOCIATION. BOSTON, 1906. cians and Gynecologists, as well as of his county, state and national societies. His numerous contributions to the literature of his specialty were of a practical char- acter. He was a careful, conservative and judicious man, whose influence in the community and in the pro- fession was always for the best. cians and Gynecologists, as well as of his county, state and national societies. His numerous contributions to the literature of his specialty were of a practical char- acter. He was a careful, conservative and judicious man, whose influence in the community and in the pro- fession was always for the best. LEGAL STATUS OF FETUS. The theory of the courts was that life, in contemplation of the law, begins when the child is able to stir in the womb and prior to this time the child does not exist as capable of being the object of criminal in- tent or action. Hence, when the mother gives her con- sent, the operation could only be considered as a wrong against something that does not iegally exist. only incidentally. Surgeons of all kinds are learning to appreciate more and more the importance of having a definite under- standing or contract with the patients on whom they operate. If the patient is not in condition to give con- sent or is not -old enough to decide, the contract should be made with the legal representatives of the patient. In case no verbal or written or implied contract is made the surgeon operates at his own risk. When a contract, exists he is still liable if he does more or differently than arranged for. Of course under any circumstances he is responsible for his management of the case if it is not skillful or if he is negligent. against something iegally This was the common law till shortly before the sep- aration of the colonies from the mother country. This common law was the basis of the law of this country. In many states, this theory of the legal nonenity of the unquickened fetus was held by the courts to be the law and the early statutes of some states particularly or im- pliedly approved this theory. Now, however, this pro- vision of the common law has been superseded by the statutes which have been passed by the several states. These statutes, in most of the states, make no distinction between the commission of an offense on the child before or after quickening, although some states still provide a more serious punishment when the act is committed after quickening. negligent. The risks of the obstetrician are perhaps still greater. Many of the recent malpractice suits occur in obstet- rical cases. The laity are coming to believe that puer- peral infection is preventable and that its occurrence is due to malpractice. Obstetrical operations are exposed to the same risks as surgical operations. LEGAL STATUS OF FETUS. But operations involving the destruction of life of the fetus introduce a question that is quite different from any that can come before the surgeon and involve an additional risk. It is to this special risk or responsibility of the obstetrician that I wish to call attention as the subjective side of the question. qu c e g It will not be possible for me to go into an examin- ation of the statutes of the different states, and I must content myself with calling your attention to the prac- tical abrogation of the common law, the substitution of statutary regulations as just outlined, which practically recognize certain rights of the fetus, although they do not place it in the same category with the individual ex utero. I shall pass by a number of interesting questions which do not pertain strictly to the subject, for example, the responsibilities of the mother, and briefly refer to the general provisions that have a bearing on the legal status of the fetus as concerns the physician. f b i f quest o There is another classification of intrauterine life that might seem more natural and reasonable than those al- ready mentioned, namely, that based on the viability or non-viability of the child. Some may ask, is the destruction of a viable child, especially one near or at term, a more serious matter than that of an unformed embryo, or even than the destruction of a 24-weeks' fetus that can live out of the uterus at most only a few hours ? On mature consideration such a question will probably be found to have no biologic basis. As to the juristic side of the question it appears that in most states in this country the law makes no distinction in the legal rights of children in utero. p y At common law, procurement of an abortion after quickening, with the mother's consent was forbidden, but was not a crime punishable with imprisonment. If, however, the mother died as the result of the abortion the one who performed the act was guilty of murder. p g y The statutes of the several states generally provide that any attempt to procure an abortion, either by the administration of drugs or by the employment of in- struments, is punishable by imprisonment, unless the act is necessary to preserve the life of the mother. LAWS OF VARIOUS COUNTRIES AND STATES. We shall be much disappointed if we expect to find that the laws of the country or of any states form a body of well-digested and consistent and logical rules of ac- tion. Logical consistency is hardly a characteristic of any law. The law rather expresses the common opinion or judgment of the people, and this expression must conform to the conflicting variety of sentiments held by people of all stages of mental and moral development. If the law is ahead of the people or imposed on them by outside authority, it is apt to be executed indifferently or not at all, or it may raise opposition that leads to its annulment. In this country, as well as in England, whence our laws originally came, the laws are self-made and are generally an index'of popular sentiment. A di slaughter pu s ab e Before considering the question of most interest to us. namely, that of the justification of the act, a moment's attention should be given to a few side questions of im- portance. For example, how far is one responsible for advice to take medicine or to use means to produce an abortion. It is held that one is responsible for such ad- vice if it is acted on, but not otherwise. The question also arises concerning the efficiency of the means em- ployed. Here it is held that the intent governs. This ruling shows that the object of the law is not only or not so much to protect the fetus as to protect'the life and health of the mother from the consequences of the at- tempts at abortion. This also explains, in part at least, the ruling that the viability of the fetus is not necessary to commission of the crime, although, no doubt, the vitality of the fetus at term, is a very important con- sideration in determining the justification of an ob- stetrical operation. g y p p According to the ancient English common law, by which we mean the ancient precedents, the decisions or dicta of courts not founded on legislative enactment, the embryo or fetus before the term of quickening had no legal rights whatever. Up to the time of quicken- ing no offense could be committed by an operation that led to tire destruction or premature delivery of the fetus. LAWS OF VARIOUS COUNTRIES AND STATES. If the woman gave consent, the bringing about of an abortion was not recognized as a punishable offense. Abortion produced without her consent was punishable LEGAL STATUS OF FETUS. When the death of the mother results the crime becomes man- slaughter and is punishable as such. LEGAL STATUS OF FETUS. The legal status of the child in utero does not conform to its biologic status. All human beings ex utero are on the same plane and neither a physician or any one else has the right to take the life of one for the benefit of another or for any reason whatever, unless the state, through its judicial officers, declares the life of an indi- vidual forfeited because of his crimes and because its ex- tinction is necessary for the welfare of the state. The unborn child has not the same legal protection. Under certain circumstances its life may be taken. The laws of most states and countries justify feticide when it is necessary to save the life of the mother. The provisions q Dr. Lehmann H. Dunning died at his home in In- dianapolis, Ind., from heart disease, Jan. 4, 1906, at the age of 55. He graduated at Rush Medical College, Chi- cago, in 1872. For a number of years he had been Professor of Diseases of Women in the Medical College of Indiana and surgeon in the Indianapolis City Hos- pital and gynecologist in the Deaconess Hospital. He was a member of the American Association of Obstetri- Downloaded From: http://jama.jamanetwork.com/ by a University of New South Wales User on 05/18/2015 of these laws are of great importance to the medical profession and should be well known. Every physician should understand his legal responsibilities, rights, and obligations in this connection. The religious and ethical questions involved will not be considered in this discus- sion or only incidentally. of these laws are of great importance to the medical profession and should be well known. Every physician should understand his legal responsibilities, rights, and obligations in this connection. The religious and ethical questions involved will not be considered in this discus- sion or only incidentally. as assault. The theory of the courts was that life, in contemplation of the law, begins when the child is able to stir in the womb and prior to this time the child does not exist as capable of being the object of criminal in- tent or action. Hence, when the mother gives her con- sent, the operation could only be considered as a wrong against something that does not iegally exist. as assault. POINT DECIDED BY MEDICOLEGAL SOCIETY OF FRANCE. One important point has been discussed and decided by the medicolegal society of France. A physician is not compelled to make a destructive operation against his own judgment or conscience. In other words, if a physician advices a Cesarean secton or a symphyseot- omy or pubiotomy and this operation is refused by the patient or her husband or guardian, he can not be com- pelled to substitute an embryotomy for the operation he proposes, even if he be the only physician in the place. Such a rule would undoubtedly be followed in this country, although I do not know that any case of the kind has ever been decided. It is inconceivable that a court would hold a physician responsible for the death of a woman because he refused to perform an embryot- omy on her living child, and he certainly could not be convicted of civil malpractice in such a case. Of course, the physician has no right to leave his patient who has refused his advised conservative operation and he de- mands an embryotomy until some other physician has arrived, or until he is summarily dismissed from the case. living Just what is comprehended in the provision, "neces- sary to preserve the life of the mother," must be deter- mined by the court in each case, and decisions have var- ied in some points. In some states the statutes require that the advice of two physicians ,be secured to determine the necessity of an abortion. Where such a rule holds it is, of course, necessary to show that the physician acts in good faith, in calling a consultant who is not in col- lusion with him to perform a criminal act. Where the rule does not hold, consultation is not neccssarv. but al- ways desirable. It is always necessary to show that the physical condition of the mother requires the abortion. Fear of suicide or of remote results, developing from a possible nervous condition, does not justify the perform- ance of the act. The practice of many physicians who make the probable injury to health an indication for the induction of abortion, is not justified by law and might lead to trouble in the event that such a case wrere brought before a strict constructionist court. INDICATIONS FOR OPERATION. It is not in my province to enumerate the various in- dications for the operation, any more than it was my plan to discuss the different pathologic states that re- quired the induction of abortion. In general, it might be affirmed that the indications for destructive opera- tions are becoming contracted and many pathologic states that previously were treated by embryotomy, would not now be accepted as indications. POINT DECIDED BY MEDICOLEGAL SOCIETY OF FRANCE. It has sometimes been held that the burden of proving the ne- cessity of the abortion falls on the physician and some- times that the absence of necessity must be proven by the state. No doubt the circumstances in individual cases would have some bearing here, while in different states the practice varies. As to the legal justification of a destructive operation, probably the same can be said as was stated in regard to therapeutic abortion. In some states it might be neces- sary for the physician to prove that the operation was necessary to save the mother's life, while in most states the burden of proof would be on the state to prove that the operation was not necessary. practice So far, our attention has been addressed chiefly to the rights of the non-viable fetus and to the responsibilities incurred by the physician in its destruction. Neither the statutes nor the decisions of the courts in this coun- try have fixed the status of the viable child in utero, except as it has been included with all intrauterine life in the provisions already discussed. INDICATIONS FOR EMBRYOTOMY. All obstetrical writers in discussing the indications for embrvotomy of the living child have laid down cer- tain rules based on their own conclusions concerning the justifiability of the practice. Nearly all admit that the operation should be clone at times. A few, like Pin- ard, would do away with it entirely. In general, the operation is admitted in cases in which delivery is im- possible without Cesarean section or some operation to enlarge the pelvic girdle, and when the latter proce- dure is refused by the mother. The question is var- iously discussed from the usual religious and social standpoints, but rarely, or never, is the legal standpoint presented. The individual views of each writer are given and they generally coincide with those of others, so that the two or three sentences devoted to the subject are practically the same in all text-books. I have been able to find nothing authoritative in English concerning the legal status of the operation. Sippel, studying the German criminal law, concludes that : "In practice, the p LEGAL JUSTIFIABILITY OF FETICIDE. Whether this popular opinion or this expression of it in the statutes is morally justifiable or not, is not within the limits of my subject to discuss. We are simply con- cerned to learn definitely what the law provides. There seems to be no doubt of the far-reaching consequences of this provision concerning the necessity of preserving the life of the mother at the expense of her child. It is on this provision that the physician probably must rely for exemption in case of mutilating obstetrical opera- tions made on the living child. p LEGAL JUSTIFIABILITY OF FETICIDE. We now come to the most vital question of the legal justifiability of feticide. In some wording or other all statutes provide for exemption from punishment for recognized punishable Abortion produced without her consent was punishable Downloaded From: http://jama.jamanetwork.com/ by a University of New South Wales User on 05/18/2015 destruction of the life of the child by the induction of abortion or by embryotomy in order to save that of the mother, is not a punishable offense, and modern criminal law practice agrees in this respect. In theory, however, jurisprudence has reached no conclusion as to whether this destruction of fetal life should be allowed or con- demned, nor as to how this destruction should be leg- ally construed." Both Kossmann and von Franqué call attention to the fact that in Germany a physician who destroys a living fetus may be in danger from an un- friendly court. In this country, there 'is little or no doubt that the destructive operation, if necessary to save the life of the mother, would always be justified by the courts. abortion in case it is necessary to preserve the life of the mother. This provision expressly implies that in the eyes of the law there is a difference in the value of human lives. It is the codification or the reflection of the popular belief or popular conscience that the moth- er's life is worth more than that of the child in utero. Whether this popular opinion or this expression of it in the statutes is morally justifiable or not, is not within the limits of my subject to discuss. We are simply con- cerned to learn definitely what the law provides. There seems to be no doubt of the far-reaching consequences of this provision concerning the necessity of preserving the life of the mother at the expense of her child. It is on this provision that the physician probably must rely for exemption in case of mutilating obstetrical opera- tions made on the living child. abortion in case it is necessary to preserve the life of the mother. This provision expressly implies that in the eyes of the law there is a difference in the value of human lives. It is the codification or the reflection of the popular belief or popular conscience that the moth- er's life is worth more than that of the child in utero. E. C. ELLETT, M.D. MEMPHIS, TENN. Among the less common diseases of the cornea is that known as dendritic keratitis, to apply the name which its appearance suggests, or mycotic keratitis, a name more in accord with its etiology. This disease appears, when fully developed, as a finely branched ulceration of the cornea, running a rather protracted course. In my personal observation it has almost always appeared as a complication of acute malaria, though the same picture has been occasionally seen in patients who had no malarial manifestations, and who had not suffered from malaria at any time sufficiently recent for it to have any possible bearing on the eye trouble. The subjective symptoms are usually marked, the sensation of a foreign body being present, with some deeper aching pain. I have not noticed the supraorbital neuralgia at the beginning, of which Kipp speaks, but neuralgic pains in all the branches of the fifth are not rarely present during the course of the attack. Some patients suffer very little. The ball is injected and photophobia usually marked. It can not be said that there are any characteristic changes in the sensibility of the cornea. The tension is not altered. y p g The disease is not common. Even in malarial dis- tricts it is not one of the commoner eye diseases, and when compared with the large number of persons who have malaria, it is seen to be an unusual complication of that disease. I can only state the case thus vaguely, as I have no means of arriving at accurate statistics. The following remarks apply to its characteristics as seen by me: y It is decidedly more common in the late summer and fall, corresponding to the time of the greatest prevalence of malaria. It is rare to have an opportunity to see it prior to the ulcerative stage, though Kipp of Newark has described it as beginning as a series of small sub- epithelial lymphoid papules, which quickly break down just as phlyctenuloe may do. Judging from the size of the lesions when it is what might be called fully de- veloped, these initial papules must be of almost mi- croscopic size. The rapid coalescence of several lesions results in a fine shallow linear ulcer, with a tendency to branch, this giving the characteristic dendritic ar- rangement. The amount of infiltration of the surround- ing tissue is variable. CONCLUSION. The moral responsi- bilities of the physician for the child in utero are greater than his legal responsibilities. It is hard to dispute Pinard when he holds that neither the father, the mother, the physician, nor any other person has the right of life and death over the fetus. The frequency and boldness with which that right is claimed by the father or by the relatives of the mother should meet with firm resistance. I see no ground on which the phy- sician can stand when he decides to destroy the fetus, except a kind of implied authorization by the state, which agrees to uphold the right of the mother to self- preservation when her life is endangered by that of the fetus. hardly anything Late in the course of the disease and possibly some- what influenced by treatment, if energetic, the loss of the epithelium may become very considerable, as much as one-half of the cornea being denuded. I have never seen the lesions suppurate, and while a moderate de- gree of iritis may occur, it is never more than moder- ate, and hypopyon is never seen. The lesion is rarely or never multiple. No matter how extensive, it will be found that the ulcération is all a part of a single system or tree, though as healing progresses the bridging of the ulcer here and there may leave separate denuded areas. The history is always given of a preceding chill or chills. It is very rare in chronic forms of malaria and in those unaccompanied by chills. The course tends to be protracted when untreated. In spite of treatment some cases will last for weeks or even months, the cor- neal picture changing daily. One attack predisposes to others, but one attack is not necessarily followed by ' others. Still I have seen many patients in whom every attack of malaria "settles in the eye." From the super- ficial character of the lesions, serious damage to the cornea is not unusual. Nebulae are usually left, and if central or nearly central, the opacity itself and the re- sultant irregular astigmatism frequently reduces the vision to from 20/40 to 20/100. That the changes of curvature are a more potent factor in this result than the opacity, is shown by the improvement of vision by cylindrical lenses. CONCLUSION. This review of the legal status of the child in utero has led probably to less results than were expected. I have been disappointed in finding less material than was expected. It shows, I believe, that the legal responsi- bilities of the physician are comparatively simple. No physician need be in doubt in any case. If he believes that the preservation of the life of the mother requires the sacrifice of the child he may operate without fear. It is always better, however, to fortify his opinions by consultation with a reputable colleague. The law does not recognize that the life of the child in utero is of equal value with that of the mother. ibili i equal In deciding on his moral responsibilities, however, the Downloaded From: http://jama.jamanetwork.com/ by a University of New South Wales User on 05/18/2015 abrasion of the epithelium, this being especially true of recent lesions, but frequently it has a gray border or base rendering it more conspicuous. A proper concep- tion of its extent only can be obtained by staining with fluorescin. We might even say that the characteristic arrangement of the ulcer is not suggested until made conspicuous by staining. When seen in the earlier stages, with the ulcer involving the epithelium only, and arrested by Bowman's membrane, the unstained cornea fails to show any more than a little roughness. Later, the infiltration of the substantia propria at least suggests the character and extent of the condition, but at all stages fluorescin definitely outlines the denuded area so clearly and so sharply as to present a picture which can hardly be confused with anything else. L i h f ibl physician may have much greater difficulty. The statute law is frequently behind or at variance with the ethical law and the variance seems to be marked in this case. Many operations would be legally safe that would be un- doubtedly wrong. physician may have much greater difficulty. The statute law is frequently behind or at variance with the ethical law and the variance seems to be marked in this case. Many operations would be legally safe that would be un- doubtedly wrong. y g It is difficult to deny to the human fetus the innate right of every human being the equal right to life. On the protection of this moral law the child in utero must chiefly rely for its preservation. Read in the Section on Ophthalmology of the American Medical Association, at the Fifty-seventh Annual Session, June, 1906. CONCLUSION. It is rare for both eyes to be at- tacked, even when the disease recurs. k d Downloaded From: http://jama.jamanetwork.com/ by a University of New South Wales User on 05/18/2015 E. C. ELLETT, M.D. MEMPHIS, TENN. Often the lesion is merely an It seems to me that this is not the disease described by Horner as herpes cornea?, but is the same, as Kipp suggests, as that described by Hansen Grut and Era- mert under the name of dendritic keratitis or keratitis exulcerans dendritica mycotica, respectively. It is con- venient to tell the patient he has "fever blisters on his eye," but from the observations which it has been' possi- ble to make on this disease in its early stages, and from watching its development and the formation of new buds and off-shoots from the original furrow, I am sat- isfied that the lesions are not vesicular, but are sub- epithelial lymphoid collections, resembling phlyctenules, but very much smaller. As far as my personal obser- vation goes, I have only seen this corneal lesion in it? typical form in one case where no malarial history was Downloaded From: http://jama.jamanetwork.com/ by a University of New South Wales User on 05/18/2015
https://openalex.org/W2610638708
https://www.scielo.br/j/isz/a/NWZDXSg9kwZfnnKT9vyGZQt/?lang=pt&format=pdf
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Lista das espécies de Hippoboscoidea (Diptera) no estado de Mato Grosso do Sul, Brasil
Iheringia. Série zoologia/Iheringia. Série Zoologia
2,017
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Lista das espécies de Hippoboscoidea (Diptera) no estado de Mato Grosso do Sul, Brasil s Biológicas e da Saúde, Universidade Federal de Mato Grosso do Sul, Caixa Postal 549, 79070-900, Campo Grande, Mato Grosso do Sul, ahoo com br) 1. Centro de Ciências Biológicas e da Saúde, Universidade Federal de Mato Grosso do Sul, Caixa Postal 549, 79070-900, Campo Grande Brasil. (ggraciolli@yahoo.com.br) Brasil. (ggraciolli@yahoo.com.br) 2. Departamento de Zoologia, Instituto de Biociências, Universidade de São Paulo. Rua do Matão, Travessa 14, nº 101 Cidade Universitária, 05508-900, São Paulo, São Paulo Brasil (ggraciolli@yahoo.com.br) rtamento de Zoologia, Instituto de Biociências, Universidade de São Paulo. Rua do Matão, Travessa 14, nº 101 Cidade Universitária, 05508- aulo Brasil (gg y ) 2. Departamento de Zoologia, Instituto de Biociências, Universidade de São Paulo. Rua do Matão, Travessa 14, nº 101 Cidade Universitária, 05508-900, São Paulo, São Paulo, Brasil. ( ) 2. Departamento de Zoologia, Instituto de Biociências, Universidade de São Paulo. Rua do Matão, Travessa 14, nº 101 Cida São Paulo, Brasil. Recebido 18 novembro 2016 Aceito 6 fevereiro 2017 Recebido 18 novembro 2016 Aceito 6 fevereiro 2017 DOI: 10.1590/1678-4766e2017137 ABSTRACT. Checklist of Hippoboscoidea (Diptera) of the state of Mato Grosso do Sul, Brazil. A checklist of the species of Hippoboscidae, Nycteribiidae and Streblidae and their hosts and localities in the state of Mato Grosso do Sul, based on literature and specimens deposited in scientifi c collections, is presented. Fifty-three species are recorded, being Xenotrichobius noctilionis Wenzel, 1976 reported for fi rst time in Brazil. KEYWORDS. Biota-MS Program, Cerrado, Pantanal, Floresta Atlântica, host. RESUMO. Uma listagem das espécies de Hippoboscidae, Nycteribiidae e Streblidae, seus hospedeiros e localidades no estado de Mato Grosso do Sul, baseada em dados de literatura e no acervo de coleções científi cas, é apresentada. Cinquenta e três espécies são registradas, sendo Xenotrichobius noctilionis Wenzel, 1976 reportada pela primeira vez no Brasil. PALAVRAS-CHAVE. Programa Biota-MS, Cerrado, Pantanal, Floresta Atlântica, hospedeiro. Na superfamília Hippoboscoidea estão arroladas quatro famílias de moscas caliptradas, Glossinidae, Hippoboscidae, Nycteribiidae e Streblidae (McAlpine, 1989). Glossinidae compreende moscas hematófagas restritas à Região Etiópica, enquanto as outras três famílias incluem moscas hematófagas, ectoparasitas de aves e mamíferos e com distribuição cosmopolita. Hippoboscidae são moscas ectoparasitas de aves e mamíferos (artiodáctilos, lêmures e cangurus) (Maa, 1969). No continente americano foram registradas 49 espécies de 12 gêneros e no Brasil 30 espécies de 10 gêneros (Maa, 1969). Nycteribiidae e Streblidae são formadas por espécies exclusivamente ectoparasitas de morcegos (Dick & Miller, 2010; Graciolli, 2010). Lista das espécies de Hippoboscoidea (Diptera) no estado de Mato Grosso do Sul, Brasil No continente americano foram registradas dois gêneros e 53 espécies de nicteribiídeos (Graciolli, 2010) e 27 gêneros e 159 espécies de estreblídeos (Dick & Graciolli, 2008; Graciolli & Azevedo, 2011; Graciolli & Dick, 2012; Poinar & Brown, 2012), sendo um gênero e espécie fóssil (Poinar & Brown, 2012). No Brasil, são conhecidas até o momento dois gêneros e 26 espécies (Graciolli et al., 2007) e 20 gêneros e 74 espécies (Aguiar et al., 2006; Eriksson et al., 2011; Graciolli et al., 2008, 2010; Graciolli & Azevedo, 2011; Graciolli & Dick, 2012) de nicteribiídeos e estreblídeos, respectivamente. das espécies das famílias Hippoboscidae, Nycteribiidae e Streblidae no Estado de Mato Grosso do Sul. Série Zoologia www.scielo.br/isz e-ISSN 1678-4766 Iheringia Iheringia Série Zoologia www.scielo.br/isz e-ISSN 1678-4766 Iheringia Iheringia Fundação Zoobotânica do Rio Grande do Sul Museu de Ciências Naturais Fundação Zoobotânica do Rio Grande do Sul Museu de Ciências Naturais MATERIAL E MÉTODOS A listagem foi feita a partir de dados de literatura e de espécimes depositados na Coleção Zoológicas de Referência da Universidade Federal de Mato Grosso do Sul (ZUFMS) e na Coleção Entomológica da Universidade Para o Desenvolvimento do Estado de Mato Grosso do Sul (Uniderp/Anhanguera), ambas em Campo Grande. Na listagem as famílias, assim como subfamílias, gêneros e espécies em cada família são apresentadas em ordem alfabética. Para cada espécie as seguintes informações são apresentadas: espécie hospedeira, município e a localidade onde o díptero hipoboscoídeo foi coletado sobre a espécie hospedeira e a fonte da informação (referência bibliográfi ca e/ou coleção científi ca). A espécie hospedeira ou a localidade precisa no estado pode estar ausente. Os nomes científi cos dos hospedeiros estão apresentados em ordem alfabética. As localidades, identifi cadas por algarismos, estão representadas em um mapa (Fig. 1). i Em relação aos hospedeiros, os nomes subespecífi cos não foram utilizados. Para os nomes válidos e sinonímias das espécies de aves seguiu-se a Lista das Aves do Brasil, Nesta contribuição é apresentada uma listagem Iheringia, Série Zoologia, 107(supl.): e2017137. 2017. 1 Lista das espécies de Hippoboscoidea (Diptera)... Graciolli et al. Fig. 1. MATERIAL E MÉTODOS Localidades, com coordenadas geográficas, onde foram coletados espécimes de Hippoboscoidea no Estado do Mato Grosso do Sul, Brasil: 1, Porto Índio - 17°40’08.70”S, 57°45’21.40”O; 2, Fazenda Recreio - 18°13’00.00”S, 54°40’00.00”O; 3, Fazenda Guanabara - 18°14’06.50”S, 55°45’00.90”O; 4, Coxim - 18°30’13.98”S, 54°44’50.00”O; 5, Fazenda Campo Neta - 18°45’38.80”S, 56°17’48.30”O; 6, Fazenda Nhumirim - 18°59’15.70”S, 56°37’09.30”O; 7, Maciço do Urucum - 19°12’16.10”S, 57°30’20.20”O; 8, Fazenda Santa Maria - 19°19’47.48”S, 55°22’50.62”O; 9, Fazenda Santa Terezinha - 19°22’39.70”S, 56°03’21.80”O; 10, Fazenda Olhos d’água - 19°26’00.52”S, 55°12’08.71”O; 11, Fazenda Santa Emília/IPPAN Uniderp - 19°30’23.24”S, 55°36’46.10”O; 12, Fazenda Rio Negro - 19°34’22.00”S, 56°14’36.00”O; 13, Fazenda São Bento/Base de Estudos do Pantanal UFMS - 19°34’38.90”S, 57°01’09.10”O; 14, Forte Coimbra - 19°54’49.60”S, 57°47’19.40”O; 15, Estância Caiman - 19°57’56.00”S, 56°18’37.00”O; 16, Fazenda Serra Negra I - 20°00’32.76”S, 54°27’44.64”O; 17, Fazenda Guaicurus - 20°04’49.96”S, 56°28’55.05”O; 18, Fazenda Furnas d’água - 20°09’06.70”S, 55°24’13.03”O; 19, Salobra - 20°11’52.00”S, 56°30’17.00”O; 20, Fazenda São Cristóvão/Miranda - 20°20’06.29”S, 56°22’53.90”O; 21, Campo Grande - 20°28’51.43”S, 54°37’04.51”O; 22, Lagoa do Ouro - 20°30’01.48”S, 54°19’48.54”O; 23, Fazenda São Vicente - 20°31’25.37”S, 56°24’56.63”O; 24, Gruta das Fadas/ Bodoquena - 20°34’04.76”S, 56°43’32.02”O; 25, Gruta “Seu” Natal e Complexo de Grutas do Córrego Azul - 20°45’46.96”S, 56°45’10.02”O; 26, Fazenda Serrinha – 20°50’00.00”S, 54°49’00.00”O; 27, Fazenda Princesinha – 21°05’00.00”S, 57°29’00.00”O; 28, Fazenda Saltinho – 21°24’00.00”S, 54°25’00.00”O; 29, Fazenda Campo Verde – 21°24’48.00”S, 56°46’32.00”O; 30, Fazenda Sismório Corrêa – 21°28’00.00”S, 55°10’00.00”O; 31, Maracaju - 21°37’07.00”S, 55°10’02.00”O; 32, Fazenda Inho – 21°54’00.00”S, 54°32’00.00”O; 33, Fazenda Lagoão – 22°01’00.00”S, 54°47’00.00”O; 34, Porto Murtinho - 22°01’31.80”S, 57°54’15.70’’O; 35, Fazenda Manjolo – 22°05’00.00”S, 54°35’00.00”O. Fig. 1. Lipopteninae p p 1. Lipoptena guimaraesi Bequaert, 1957. Ozotoceros bezoarticus (Linnaeus, 1758), Corumbá (6) (Graciolli et al., 2011). MATERIAL E MÉTODOS Localidades, com coordenadas geográficas, onde foram coletados espécimes de Hippoboscoidea no Estado do Mato Grosso do Sul, Brasil: 1, Porto Índio - 17°40’08.70”S, 57°45’21.40”O; 2, Fazenda Recreio - 18°13’00.00”S, 54°40’00.00”O; 3, Fazenda Guanabara - 18°14’06.50”S, 55°45’00.90”O; 4, Coxim - 18°30’13.98”S, 54°44’50.00”O; 5, Fazenda Campo Neta - 18°45’38.80”S, 56°17’48.30”O; 6, Fazenda Nhumirim - 18°59’15.70”S, 56°37’09.30”O; 7, Maciço do Urucum - 19°12’16.10”S, 57°30’20.20”O; 8, Fazenda Santa Maria - 19°19’47.48”S, 55°22’50.62”O; 9, Fazenda Santa Terezinha - 19°22’39.70”S, 56°03’21.80”O; 10, Fazenda Olhos d’água - 19°26’00.52”S, 55°12’08.71”O; 11, Fazenda Santa Emília/IPPAN Uniderp - 19°30’23.24”S, 55°36’46.10”O; 12, Fazenda Rio Negro - 19°34’22.00”S, 56°14’36.00”O; 13, Fazenda São Bento/Base de Estudos do Pantanal UFMS - 19°34’38.90”S, 57°01’09.10”O; 14, Forte Coimbra - 19°54’49.60”S, 57°47’19.40”O; 15, Estância Caiman - 19°57’56.00”S, 56°18’37.00”O; 16, Fazenda Serra Negra I - 20°00’32.76”S, 54°27’44.64”O; 17, Fazenda Guaicurus - 20°04’49.96”S, 56°28’55.05”O; 18, Fazenda Furnas d’água - 20°09’06.70”S, 55°24’13.03”O; 19, Salobra - 20°11’52.00”S, 56°30’17.00”O; 20, Fazenda São Cristóvão/Miranda - 20°20’06.29”S, 56°22’53.90”O; 21, Campo Grande - 20°28’51.43”S, 54°37’04.51”O; 22, Lagoa do Ouro - 20°30’01.48”S, 54°19’48.54”O; 23, Fazenda São Vicente - 20°31’25.37”S, 56°24’56.63”O; 24, Gruta das Fadas/ Bodoquena - 20°34’04.76”S, 56°43’32.02”O; 25, Gruta “Seu” Natal e Complexo de Grutas do Córrego Azul - 20°45’46.96”S, 56°45’10.02”O; 26, Fazenda Serrinha – 20°50’00.00”S, 54°49’00.00”O; 27, Fazenda Princesinha – 21°05’00.00”S, 57°29’00.00”O; 28, Fazenda Saltinho – 21°24’00.00”S, 54°25’00.00”O; 29, Fazenda Campo Verde – 21°24’48.00”S, 56°46’32.00”O; 30, Fazenda Sismório Corrêa – 21°28’00.00”S, 55°10’00.00”O; 31, Maracaju - 21°37’07.00”S, 55°10’02.00”O; 32, Fazenda Inho – 21°54’00.00”S, 54°32’00.00”O; 33, Fazenda Lagoão – 22°01’00.00”S, 54°47’00.00”O; 34, Porto Murtinho - 22°01’31.80”S, 57°54’15.70’’O; 35, Fazenda Manjolo – 22°05’00.00”S, 54°35’00.00”O. Lista das espécies de Hippoboscoidea e de seus hospedeiros para o estado de Mato Grosso do Sul. instituída pelo Comitê Brasileiro de Registros Ornitológicos (CBRO, 2011), para os de cervídeos Tiepolo & Tomas (2011) e para os de morcegos Gardner (2007), com exceção para as espécies de Natalus Gray, 1838 para as quais adotou-se Garbino & Tejedor (2013). HIPPOBOSCIDAE Lipopteninae Streblinae 15. Metelasmus pseudopterus Coquillett, 1907. Artibeus planirostris Spix, 1823, Jardim (29) (ZUFMS, Eriksson et al., 2011). 16. Strebla chrotopteri Wenzel, 1976. Chrotopterus auritus (Peters, 1856), Jardim (29) (ZUFMS, Eriksson et al., 2011). 17. Strebla curvata Wenzel, 1976. Glossophaga soricina (Pallas, 1766), Bodoquena (24) (ZUFMS), Jardim (29) (Eriksson et al., 2011). 5. Microlynchia crypturelli Bequaert, 1938. Crypturellus parvirostris (Wagler, 1827), Coxim (2) (Bequaert, 1955). 18. Strebla diaemi Wenzel, 1966. Diaemus youngi (Jentink, 1893), Aquidauana (9) (Uniderp/Anhanguera). 6. Microlynchia pusilla (Speiser, 1902). Crypturellus sp., Maracaju (31) (Bequaert, 1955). 19. Strebla guajiro (García & Casal, 1965). Carollia perspicillata (L., 1758), Bodoquena (24, 25) (ZUFMS), Corumbá (7) (ZUFMS); Jardim (29) (ZUFMS, Eriksson et al., 2011). Glossophaga soricina, Corumbá (14) (ZUFMS). 7. Olfersia bisulcata Macquart, 1847. Cathartes aura, Maracaju (31) (Bequaert, 1957). 8. Olfersia coriacea Wulp, 1903. Crax sp. Maracaju (31) (Bequaert, 1957). Mesembrinibis cayennensis (Gmelin, 1789), Coxim (4) (Bequaert, 1957). 20. Strebla hertigi Wenzel, 1966. Phyllostomus discolor Wagner, 1843, Corumbá (6, 13) (Carvalho, 2007; ZUFMS). 9. Ornithoctona erythrocephala (Leach, 1817). Elanus leucurus (Vieillot, 1818), “Rio Paraná” (Bequaert, 1954). 21. Strebla mirabilis (Waterhouse, 1879). Lophostoma silvicolum d’Orbygny, 1836, Corumbá (14) (ZUFMS). 10. Pseudolynchia brunnea (Latreille, 1812). Hydropsalis albicollis (Gmelin, 1789), Miranda (19) (Bequaert, 1955). 22. Strebla tonatie (Kessel, 1924). Lophostoma brasiliense Peters, 1866, Corumbá (13) (ZUFMS). 23. Strebla wiedemanni Kolenati, 1856. Desmodus rotundus (E. Geoffroy, 1810), Aquidauana (11) (Uniderp/Anhanguera), (12) (ZUFMS, Carvalho, 2007), Corumbá (6, 7, 13,14) (Carvalho, 2007, ZUFMS), Jardim (29) (ZUFMS, Eriksson et al., 2011). Glossophaga soricina, Jardim (29) (ZUFMS). Lophostoma silvicolum, Corumbá (13) (ZUFMS). Platyrrhinus lineatus, Corumbá (7) (ZUFMS). Sturnira lilium (E. Geoffroy, 1810), Aquidauana (12) (Carvalho, 2007). Trichobiinae 11. Pseudolynchia canariensis (Macquart, 1839). Hospedeiro não determinado, Campo Grande (21) (ZUFMS) RESULTADOS E DISCUSSÃO “fulvous-bellied kite”, Maracaju (31) (Bequaert, 1955). Gampsonyx swainsonii Vigors, 1825, Miranda (19) (Bequaert, 1955). Heterospizias meridionalis (Latham, 1790), Coxim (2) (Bequaert, 1955). Comentário. A identificação na língua inglesa “Fulvous-bellied Kite” em Bequaert (1955) não é um nome reconhecido entre os ornitólogos e provavelmente este denominação trata- se de uma descrição rápida da ave feita pelo coletor de I. nigra em Maracaju. “Kites” são denominados em gaviões (Accipitridae) de pequeno tamanho corporal (às vezes de médio) e “fulvous-belly” seria alguma ave apresentado uma “barriga amarronzada”. Os hospedeiros de I. nigra em Maracaju poderiam ser Leptodon cayanensis (Latham, 1790) e Chondrohierax uncinatus (Temminck, 1822), considerando as espécies de gaviões morfologia e/ou fases de plumagem que poderiam ser caracterizado por apresentar um ventre amarronzado e que ocorrem na região de Maracaju (Fernando Costa Straube, Hori Consultoria Ambiental, com. pessoal). 14. Basilia speiseri (Miranda Ribeiro, 1907). Myotis albescens, Aquidauana (9, 11) (Uniderp/Anhanguera), Corumbá (6) (ZUFMS). Myotis nigricans, Aquidauana (9) (Uniderp/Anhanguera); Corumbá (5) (Uniderp/ Anhanguera), (6) (ZUFMS, Carvalho 2007), 13 (ZUFMS); Miranda (15) (Uniderp/Anhanguera). Myotis simus Thomas, 1901, Corumbá (13) (ZUFMS). Platyrrhinus lineatus, Corumbá (13) (ZUFMS). RESULTADOS E DISCUSSÃO Foram encontradas 11 espécies de Hippoboscidae, três de Nycteribiidae e 39 de Streblidae, totalizando 53 espécies. Xenotrichobius noctilionis é registrada pela primeira vez no Brasil, aumentando para 21 e 75 o número de gêneros e espécies, respectivamente, de estreblídeos registrados em território brasileiro. 2. Lipoptena mazamae (Rondani, 1878). Ozotoceros bezoarticus, Corumbá (6) (Graciolli et al., 2011). Hospedeiro não determinado, Miranda (19) (Bequaert, 1957); espécimen volante capturado em armadilha Malaise, Campo Grande (21) (ZUFMS). Ornithomyinae Iheringia, Série Zoologia, 107(supl.): e2017137, 2017. 2 Lista das espécies de Hippoboscoidea (Diptera)... Graciolli et al. (Uniderp/Anhanguera), Campo Grande (22) (Uniderp/ Anhanguera) e Corumbá (13) (Uniderp/Anhanguera, ZUFMS). Myotis nigricans (Schinz, 1821), Aquidauana (9) (UNIDERP/Anhanguera) (12) (ZUFMS, Carvalho, 2007), Bodoquena (23) (Uniderp/Anhanguera), Campo Grande (22) (Uniderp/Anhanguera) e Corumbá (5) (Uniderp/Anhanguera), (6, 13) (ZUFMS). Myotis riparius Handley, 1960, Corumbá (5) (Uniderp/ Anhanguera). (Uniderp/Anhanguera), Campo Grande (22) (Uniderp/ Anhanguera) e Corumbá (13) (Uniderp/Anhanguera, ZUFMS). Myotis nigricans (Schinz, 1821), Aquidauana (9) (UNIDERP/Anhanguera) (12) (ZUFMS, Carvalho, 2007), Bodoquena (23) (Uniderp/Anhanguera), Campo Grande (22) (Uniderp/Anhanguera) e Corumbá (5) (Uniderp/Anhanguera), (6, 13) (ZUFMS). Myotis riparius Handley, 1960, Corumbá (5) (Uniderp/ Anhanguera). 3. Icosta albipennis (Say, 1823). Eurypyga helias (Pallas, 1781), “Rio Paraná” (Bequaert, 1955). 3. Icosta albipennis (Say, 1823). Eurypyga helias (Pallas, 1781), “Rio Paraná” (Bequaert, 1955). 4. Icosta nigra (Perty, 1833). Accipiter bicolor pileatus (Temminck, 1823), Coxim (2) (Bequaert, 1955). Caracara plancus (Miller, 1777), Bodoquena (24) Bequaert, 1955). Cathartes aura (Linnaeus, 1758), Maracaju (31) (Bequaert, 1955). “fulvous-bellied kite”, Maracaju (31) (Bequaert, 1955). Gampsonyx swainsonii Vigors, 1825, Miranda (19) (Bequaert, 1955). Heterospizias meridionalis (Latham, 1790), Coxim (2) (Bequaert, 1955). Comentário. A identificação na língua inglesa “Fulvous-bellied Kite” em Bequaert (1955) não é um nome reconhecido entre os ornitólogos e provavelmente este denominação trata- se de uma descrição rápida da ave feita pelo coletor de I. nigra em Maracaju. “Kites” são denominados em gaviões (Accipitridae) de pequeno tamanho corporal (às vezes de médio) e “fulvous-belly” seria alguma ave apresentado uma “barriga amarronzada”. Os hospedeiros de I. nigra em Maracaju poderiam ser Leptodon cayanensis (Latham, 1790) e Chondrohierax uncinatus (Temminck, 1822), considerando as espécies de gaviões morfologia e/ou fases de plumagem que poderiam ser caracterizado por apresentar um ventre amarronzado e que ocorrem na região de Maracaju (Fernando Costa Straube, Hori Consultoria Ambiental, com. pessoal). 4. Icosta nigra (Perty, 1833). Accipiter bicolor pileatus (Temminck, 1823), Coxim (2) (Bequaert, 1955). Caracara plancus (Miller, 1777), Bodoquena (24) Bequaert, 1955). Cathartes aura (Linnaeus, 1758), Maracaju (31) (Bequaert, 1955). NYCTERIBIIDAE 12. Basilia bequaerti Guimarães & d’Andretta, 1956. Eptesicus brasiliensis (Desmarest, 1819), Rio Brilhante (32); Nova Alvorada do Sul (28); Sidrolândia (26) (Graciolli et al., 2006). Eptesicus furinalis (d’Orbigny, 1847), Aquidauana (18) (Uniderp/Anhanguera). 13. Basilia carteri Scott, 1936. Molossus molossus (Pallas, 1766) e Platyrrhinus lineatus (E. Geoffroy, 1810), Aquidauana (9) (UNIDERP/Anhanguera). Myotis albescens (E. Geoffroy, 1806), Aquidauana (9) Trichobiinae 24. Aspidoptera falcata Wenzel, 1976. Artibeus planirostris (Spix, 1823), Aquidauana (12) (Carvalho, 2007). Carollia perspicillata (Linnaeus, 1758), Jardim (29) 24. Aspidoptera falcata Wenzel, 1976. Artibeus planirostris (Spix, 1823), Aquidauana (12) (Carvalho, 2007). Carollia perspicillata (Linnaeus, 1758), Jardim (29) Iheringia, Série Zoologia, 107(supl.): e2017137, 2017. 3 Lista das espécies de Hippoboscoidea (Diptera)... Graciolli et al. (ZUFMS, Eriksson et al., 2011). Desmodus rotundus (E. Geoffroy, 1810), Aquidauana (12) (Carvalho, 2007). Glossophaga soricina (Pallas, 1766), Jardim (29) (ZUFMS, Eriksson et al., 2011). Platyrrhinus lineatus, Aquidauana (12) (Carvalho, 2007). Sturnira lilium (E. Geoffroy, 1810), Aquidauana (9) (Uniderp/Anhanguera), (12) (Carvalho, 2007; ZUFMS), Bodoquena (20, 23) (Uniderp/Anhanguera), Corumbá (6, 13) (ZUFMS, Carvalho, 2007), Itaporã (33) (ZUFMS, Graciolli et al., 2006), Jardim (29) (ZUFMS, Eriksson et al., 2011); Sidrolândia (30) (Graciolli et al., 2006). Corumbá (14) (ZUFMS). Myotis riparius, Corumbá (5) (Uniderp/Anhanguera). Phyllostomus hastatus, Miranda (17) (Uniderp/Anhanguera). Platyrrhinus lineatus, Aquidauana (12) (Carvalho, 2007), Corumbá (1) (ZUFMS). Sturnira lilium, Corumbá (7) (ZUFMS), Douradina (35) (Graciolli et al., 2006). 29. Megistopoda proxima (Séguy, 1926). Artibeus planirostris, Aquidauana (12) (Carvalho, 2007). Carollia perspicillata, Jardim (29) (ZUFMS, Eriksson et al., 2011). Desmodus rotundus, Aquidauana (12) (Carvalho, 2007). Glossophaga soricina, Corumbá (7) (ZUFMS), Jardim (29) (ZUFMS, Eriksson et al., 2011). Sturnira lilium, Aquidauana (9) (Uniderp/Anhanguera), (12) (Carvalho, 2007), Bonito (27) (Graciolli et al., 2006), Corumbá (6, 7, 13) (Carvalho, 2007; ZUFMS), Douradina (35) (ZUFMS), Jardim (29) (ZUFMS, Eriksson et al., 2011), Sidrolândia (26, 30) (ZUFMS, Graciolli et al., 2006). 25. Aspidoptera phyllostomatis (Perty, 1833). Artibeus lituratus (Olfers, 1818), Aquidauana (12) (Carvalho, 2007), Corumbá (6, 13) (ZUFMS, Carvalho, 2007). Artibeus planirostris, Aquidauana (8, 9, 10, 18) (Uniderp/Anhanguera), (12) (ZUFMS, Carvalho, 2007), Bodoquena (23) (Uniderp/Anhanguera), Bonito (27) (Graciolli et al., 2006), Corguinho (16) (Uniderp/ Anhanguera), Corumbá (5) (Uniderp/Anhanguera), (6, 13, 14) (ZUFMS, Carvalho, 2007), Jardim (29) (ZUFMS, Eriksson et al., 2011), Nova Alvorada do Sul (28) (Graciolli et al., 2006). Carollia perspicillata, Jardim (29) (Eriksson et al., 2011). Desmodus rotundus, Jardim (29) (ZUFMS, Eriksson et al. 2011). Diaemus youngi, Corumbá (5) (Uniderp/Anhanguera). Platyrrhinus lineatus, Corumbá (1) (ZUFMS). Sturnira lilium, Aquidauana (12) (Carvalho, 2007). 30. Noctiliostrebla aitkeni Wenzel, 1966. Noctilio albiventris Desmarest, 1818, Aquidauana (9) (Uniderp/ Anhanguera). Noctilio leporinus (L., 1758), Aquidauana (11) (Uniderp/Anhanguera). 31. Noctiliostrebla dubia (Rudow, 1871). Noctilio leporinus, Aquidauana (9, 11) (Uniderp/Anhanguera). 32. Noctiliostrebla maai Wenzel, 1966. Noctilio albiventris, Aquidauana (9) (Uniderp/Anhanguera), (12) (ZUFMS, Carvalho, 2007); Corumbá (6, 7, 13, 14) (Carvalho, 2007; ZUFMS), Miranda (15) (Uniderp/Anhanguera). Trichobiinae Noctilio leporinus, Aquidauana (9) (Uniderp/Anhanguera); Corumbá (13) (ZUFMS). Platyrrhinus lineatus, Corumbá (1) (ZUFMS). 26. Exastinion clovisi (Pessôa & Guimarães, 1937). Anoura geoffroyi Gray, 1838, Aquidauana (18) (Uniderp/Anhanguera). Platyrrhinus lineatus, Corumbá (1) (ZUFMS). 33. Paradyschiria parvula Falcoz, 1931. Artibeus planirostris, Corumbá (13, 14) (ZUFMS). Eumops auripendulus (Shaw, 1800), Corumbá (5) (Uniderp/ Anhanguera). Lophostoma silvicolum, Aquidauana (9) (Uniderp/Anhanguera). Noctilio albiventris, Aquidauana (9) (Uniderp/Anhanguera), (12) (ZUFMS, Carvalho, 2007); Corumbá (1, 6, 7, 13, 14) (ZUFMS, Carvalho, 2007). Noctilio leporinus, Aquidauana (9) (Uniderp/Anhanguera); Corumbá (13) (ZUFMS). Phyllostomus hastatus, Aquidauana (9) (Uniderp/ Anhanguera). Platyrrhinus lineatus, Corumbá (1) (ZUFMS). 27. Mastoptera minuta (Costa Lima, 1921). Artibeus planirostris, Corumbá (14) (ZUFMS). Glossophaga soricina, Corumbá (14) (ZUFMS). Lophostoma brasiliense Peters, 1866, Aquidauana (12) (Carvalho, 2007), Corumbá (13) (ZUFMS). Lophostoma silvicolum, Aquidauana (9) (Uniderp/Anhanguera), (12) (ZUFMS, Carvalho, 2007), Corumbá (3) (Uniderp/Anhanguera), (6, 13, 14) (ZUFMS, Carvalho, 2007); Porto Murtinho (34) (ZUFMS). Phyllostomus hastatus (Pallas, 1767), Corumbá (6) (Carvalho, 2007). Platyrrhinus helleri (Peters, 1866), Corumbá (13) (ZUFMS). 28. Megistopoda aranea (Coquillett, 1899). Artibeus lituratus, Aquidauana (12) (Carvalho, 2007), Corumbá (6, 7) (ZUFMS, Carvalho, 2007). Artibeus planirostris, Aquidauana (9, 11, 18) (Uniderp/Anhanguera), (12) (ZUFMS, Carvalho, 2007), Bodoquena (23) (Uniderp/Anhanguera), Bonito (27) (Graciolli et al., 2006), Campo Grande (21) (ZUFMS), Corguinho (16) (Uniderp/Anhanguera), Corumbá (1, 6, 7, 13, 14) (ZUFMS, Carvalho, 2007), Itaporã (33) (Graciolli et al., 2006), Jardim (29) (ZUFMS, Eriksson et al., 2011), Nova Alvorada do Sul (28) (Graciolli et al., 2006), Porto Murtinho (34) (ZUFMS). Carollia perspicillata, Corumbá (7) (ZUFMS), Jardim (29) (ZUFMS, Eriksson et al., 2011). Diaemus youngi, Corumbá (5) (Uniderp/Anhanguera). Glossophaga soricina, 34. Paratrichobius longicrus (Miranda Ribeiro, 1907). Artibeus lituratus, Bodoquena (23) (Uniderp/ Anhanguera); Campo Grande (21) (ZUFMS). Platyrrhinus lineatus, Bonito (27) (Graciolli et al., 2006), Campo Grande (21) (ZUFMS), Jardim (29) (ZUFMS), Miranda (17) (Uniderp/Anhanguera). 35. Pseudostrebla greenwelli Wenzel, 1966. Hospedeiro não determinado, Aquidauana (12) (ZUFMS). 36. Pseudostrebla ribeiroi Costa Lima, 1921. Lophostoma silvicolum, Aquidauana (9) (Uniderp/Anhanguera), (12) (ZUFMS), Corumbá (6, 13) (ZUFMS, Carvalho, 2007); Porto Murtinho (34) (ZUFMS). 37. Speiseria ambigua Kessel, 1925. Carollia perspicillata, Corumbá (7) (ZUFMS), Jardim (29) (ZUFMS, Iheringia, Série Zoologia, 107(supl.): e2017137, 2017. 4 Lista das espécies de Hippoboscoidea (Diptera)... Graciolli et al. Eriksson et al., 2011). Glossophaga soricina, Corumbá (6) (ZUFMS); Jardim (29) (ZUFMS, Eriksson et al., 2011). discolor, Corumbá (5) (Uniderp/Anhanguera). Phyllostomus hastatus, Aquidauana (9, 11, 18) (Uniderp/ Anhanguera), (12) (Carvalho, 2007); Bodoquena (25) (ZUFMS); Corumbá (13) (ZUFMS), Miranda (17) (Uniderp/Anhanguera). Promops centralis Thomas, 1915, Corumbá (5) (Uniderp/Anhanguera). 38. Trichobiinae Trichobioides perspicillatus (Pessôa & Galvão, 1936). Phyllostomus discolor, Aquidauana (9) (Uniderp/ Anhanguera), (12) (ZUFMS, Carvalho, 2007), Corumbá (6, 13, 14) (ZUFMS, Carvalho, 2007); Miranda (17) (Uniderp/Anhanguera). Phyllostomus elongatus (E. Geoffroy, 1810), Corumbá (13) (ZUFMS). 48. Trichobius parasiticus Gervais, 1844. Chrotopterus auritus, Aquidauana (12) (Carvalho, 2007). Desmodus rotundus, Aquidauana (11) (Uniderp/Anhanguera), (12) (Carvalho, 2007). Corumbá (13, 14) (ZUFMS). Platyrrhinus helleri, Corumbá (13) (ZUFMS). 39. Trichobius affinis Wenzel, 1976. Lophostoma brasiliense, Aquidauana (12) (Carvalho, 2007). 40. Trichobius angulatus Wenzel, 1976. Artibeus planirostris, Corumbá (13) (ZUFMS). Glossophaga soricina, Corumbá (6) (Carvalho, 2007), Jardim (29) (ZUFMS). Platyrrhinus lineatus, Aquidauana (12) (ZUFMS), Bodoquena (23) (Uniderp/Anhanguera); Corumbá (13) (ZUFMS); Jardim (29) (ZUFMS, Eriksson et al., 2011). 49. Trichobius persimilis Wenzel, 1976. Sturnira lilium, Aquidauana (12) (Carvalho, 2007). 40. Trichobius angulatus Wenzel, 1976. Artibeus planirostris, Corumbá (13) (ZUFMS). Glossophaga soricina, Corumbá (6) (Carvalho, 2007), Jardim (29) 50. Trichobius silvicolae Wenzel, 1976. Lophostoma brasiliense, Corumbá (13) (ZUFMS). Lophostoma silvicolum, Aquidauana (9) (Uniderp/Anhanguera), (12) (Carvalho, 2007); Corumbá (3) (Uniderp/Anhanguera), (6, 13, 14) (Carvalho, 2007). Phyllostomus hastatus, Corumbá (6) (Carvalho, 2007). (ZUFMS). Platyrrhinus lineatus, Aquidauana (12) (ZUFMS), Bodoquena (23) (Uniderp/Anhanguera); Corumbá (13) (ZUFMS); Jardim (29) (ZUFMS, Eriksson et al., 2011). 41. Trichobius costalimai Guimarães, 1938. Phyllostomus discolor, Aquidauana (9, 11) (Uniderp/Anhanguera), (12) (Carvalho, 2007); Corumbá (6, 13, 14) (ZUFMS, Carvalho, 2007); Miranda (17) (Uniderp/Anhanguera). Phyllostomus elongatus, Corumbá (13) (ZUFMS). 51. Trichobius tiptoni Wenzel, 1976. Anoura caudifer, Bodoquena (25) (ZUFMS); Jardim (29) (ZUFMS). 52. Trichobius uniformis Curran, 1935. Artibeus planirostris, Corumbá (6) (ZUFMS). Glossophaga soricina, Aquidauana (9) (Uniderp/Anhanguera), (12) (Carvalho, 2007); Bodoquena (24) (ZUFMS); Corumbá (14) (ZUFMS); Jardim (29) (ZUFMS, Eriksson et al., 2011). Sturnira lilium, Jardim (29) (Eriksson et al., 2011). 42. Trichobius diaemi Wenzel, 1976. Diaemus youngi, Aquidauana, (9) (Uniderp/Anhanguera). Myotis albescens, Corumbá (5) (Uniderp/Anhanguera). 43. Trichobius dugesii Townsend, 1891. Diaemus youngi, Aquidauana (12) (Carvalho, 2007). Glossophaga soricina, Aquidauana (12); Corumbá (6) (Carvalho, 2007); Jardim (29) (ZUFMS, Eriksson et al., 2011). 53. Xenotrichobius noctilionis Wenzel, 1976. Noctilio albiventris, Corumbá (13) (ZUFMS). 44. Trichobius galei Wenzel, 1966. Micronycteris sanborni (Simmons, 1996), Corumbá (14) (ZUFMS). Natalus macrourus (Gervais, 1856), Corumbá (14) (ZUFMS). Comentários sobre a lista, riqueza do estado comparado com outras regiões. Os estados com maior de número de espécies de Hippoboscoidea são Paraná e São Paulo com 57 e 56 espécies registradas, respectivamente. Trichobiinae O Mato Grosso do Sul é o terceiro estado (53); no entanto o número de espécies de Nycteribiidae é somente três, número inferior a outras unidades da Federação como Santa Catarina, onde há oito espécies registradas. Esta informação evidencia que o conhecimento sobre a distribuição geográfica das três famílias de Hippoboscoidea nos estados e regiões do Brasil não é uniforme, sendo normalmente o número de Hippoboscidae inferior ao de Nycteribiidae e Streblidae.l 45. Trichobius joblingi Wenzel, 1966. Anoura caudifer (E. Geoffroy, 1818), Jardim (29) (Eriksson et al., 2011). Artibeus planirostris, Corumbá (7) (ZUFMS), Jardim (29) (ZUFMS, Eriksson et al., 2011). Carollia perspicillata, Aquidauana (12) (Carvalho 2007), (18) (Uniderp/Anhanguera); Bodoquena (23) (Uniderp/Anhanguera), (24, 25) (ZUFMS); Bonito (27) (Graciolli et al., 2006); Campo Grande (21) (ZUFMS); Corumbá (7, 13, 14) (ZUFMS); Jardim (29) (ZUFMS, Eriksson et al., 2011); Nova Alvorada do Sul (28) (Graciolli et al., 2006, ZUFMS). Glossophaga soricina, Aquidauana (9) (Uniderp/Anhanguera), (12) (Carvalho, 2007); Corumbá (6, 7, 14) (ZUFMS); Porto Murtinho (34) (ZUFMS). Lophostoma silvicolum, Corumbá (14) (ZUFMS). Mimon bennettii (Gray, 1838), Aquidauana (18) (Uniderp/Anhanguera). Platyrrhinus lineatus, Aquidauana (12) (Carvalho, 2007); Campo Grande (21) (ZUFMS); Jardim (29) (ZUFMS). Sturnira lilium, Jardim (29) (ZUFMS, Eriksson et al., 2011). Tonatia bidens (Spix, 1823), Aquidauana (18) (Uniderp/ Anhanguera). 45. Trichobius joblingi Wenzel, 1966. Anoura caudifer (E. Geoffroy, 1818), Jardim (29) (Eriksson et al., 2011). Artibeus planirostris, Corumbá (7) (ZUFMS), Jardim (29) (ZUFMS, Eriksson et al., 2011). Carollia perspicillata, Aquidauana (12) (Carvalho 2007), (18) (Uniderp/Anhanguera); Bodoquena (23) (Uniderp/Anhanguera), (24, 25) (ZUFMS); Bonito (27) (Graciolli et al., 2006); Campo Grande (21) (ZUFMS); Corumbá (7, 13, 14) (ZUFMS); Jardim (29) (ZUFMS, Eriksson et al., 2011); Nova Alvorada do Sul (28) (Graciolli et al., 2006, ZUFMS). Glossophaga soricina, Aquidauana (9) (Uniderp/Anhanguera), (12) (Carvalho, 2007); Corumbá (6, 7, 14) (ZUFMS); Porto Murtinho (34) (ZUFMS). Lophostoma silvicolum, Corumbá (14) (ZUFMS). Mimon bennettii (Gray, 1838), Aquidauana (18) (Uniderp/Anhanguera). Platyrrhinus lineatus, Aquidauana (12) (Carvalho, 2007); Campo Grande (21) (ZUFMS); Jardim (29) (ZUFMS). Sturnira lilium, Jardim (29) (ZUFMS, Eriksson et al., 2011). Tonatia bidens (Spix, 1823), Aquidauana (18) (Uniderp/ Anhanguera). Um dos fatores que pode estar influenciando esta diferença é que hipoboscídeos parasitam aves e cervídeos, enquanto nicteribíideos e estreblídeos são encontrados em morcegos. REFERÊNCIAS BIBLIOGRÁFICAS Das 35 localidades onde foram coletados espécimes de Hippoboscoidea, 16 estão localizadas no Pantanal, o mesmo número no Cerrado e três na Mata Atlântica (Fig. 1). Das 35 localidades onde foram coletados espécimes de Hippoboscoidea, 16 estão localizadas no Pantanal, o mesmo número no Cerrado e três na Mata Atlântica (Fig. 1). Aguiar, L. M. de S. & Antonini, Y. 2011. Descriptive ecology of bat flies (Diptera: Hippoboscoidea) associated with vampire bats (Chiroptera: Phyllostomidae) in the cerrado of Central Brazil. Memórias do Instituto Oswaldo Cruz 106:170-176. O Pantanal é o bioma com maior número de espécies de Hippoboscoidea registradas, quatro de Hippoboscidae, duas de Nycteribiidae e 33 de Streblidae, totalizando 39 táxons. Para o Cerrado foram registradas sete espécies de Hippoboscidae, duas de Nycteribiidae e 20 de Streblidae, totalizando 29 espécies; e para a Floresta Atlântica foram encontradas uma de Nycteribiidae e três de Streblidae, perfazendo quatro espécies. Oswaldo Cruz 106:170-176. Aguiar, L. M. de S.; Camargo, W. R. & Portella, A. de S. 2006. Occurrence of white-winged vampire bat, Diaemus youngi (Mammalia, Chiroptera), in the Cerrado of Distrito Federal, Brazil. Revista Brasileira de Zoologia 23:893-896. l Brasileira de Zoologia 23:893-896. Bequaert, J. 1954. The Hippoboscidae or louse-flies (Diptera) of mammals and birds Part II. Taxonomy, evolution and revision of American genera and species. Entomologica Americana, News Series 34:1-232. l Bequaert, J. 1955. The Hippoboscidae or louse-flies (Diptera) of mammals and birds Part II. Taxonomy, evolution and revision of American genera and species. Entomologica Americana, New Series 35:233-416.l Principais lacunas de conhecimento. Embora em comparação com o restante do país Mato Grosso do Sul seja o terceiro estado com o número de espécies, o conhecimento sobre a distribuição nos biomas e os hospedeiros de Hippoboscoidea neste estado ainda é incipiente. Com exceção de algumas localidades na Serra da Bodoquena e na região de Passo do Lontra no Pantanal, os registros aqui apresentados são de coletas realizadas de forma não sistemática e ocasional. Embora seja o bioma melhor amostrado, a maior parte do Pantanal continua não amostrada, assim como, grande parte do Cerrado, especialmente a região nordeste e leste. Enquanto isso, a Floresta Atlântica possui a maior lacuna de amostragem e conhecimento (Fig. 1). Bequaert, J. 1957. The Hippoboscidae or louse-flies (Diptera) of mammals and birds. Part II. Taxonomy, evolution and revision of American genera and species. Entomologica Americana, New Series 36:417-611. Carvalho, L. F. A. C. 2007. REFERÊNCIAS BIBLIOGRÁFICAS Riqueza e diversidade de dípteros ectoparasitos de morcegos no Pantanal da Nhecolândia. Dissertação de Mestrado. Campo Grande, Universidade Federal de Mato Grosso do Sul. CBRO - Comitê Brasileiro de Registros Ornitológicos 2011. Listas das aves do Brasil. 10ed, 25/1/2011. Disponível em <http://www.cbro. org.br>. Acessado em 14/05/2012. Dias, P. A.; Santos, C. L. C. dos S.; Rodrigues, F. S.; Rosa, L. C.; Lobato, K. S. & Rebêlo, J. M. M. 2009. Espécies de moscas ectoparasitas (Diptera, Hippoboscoidea) de morcegos (Mammalia, Chiroptera) no estado do Maranhão. Revista Brasileira de Entomologia 53:128-133. Dick, C. W. & Graciolli, G. 2008. Checklist of the World Streblidae (Diptera: Hippoboscoidea). Disponível em: <http://fm1.fieldmuseum. org/aa/Files/cdick/Streblidae_Checklist_18sep08.pdf> . Acessado em 01/08/2012. Perspectivas de pesquisa para os próximos 10 anos. Para Mato Grosso do Sul é esperada uma grande diversidade de espécies, visto que o estado possui extensas áreas de três biomas brasileiros. Por isso, espera-se um intenso aumento no conhecimento sobre as famílias de Hippoboscoidea no estado e no país, caso as seguintes medidas sejam realizadas: (a) continuação e ampliação de programas sobre biodiversidade (por exemplo, AER da Serra da Bodoquena, AER Taboco e BIOTA/MS) que incentivem a realização de inventários em regiões pouco estudadas; (b) formação de taxonomistas que produzam chaves de identificação para gêneros e espécies de fácil utilização por outros pesquisadores como ornitólogos e mastozoólogos, além de outros profissionais e (c) maior participação de ornitólogos e mastozoólogos na coleta dos ectoparasitos, pois são os pesquisadores que normalmente estão em contato com aves e mamíferos em campo e têm condições de garantir uma identificação específica confiável dos mesmos. Já seria um grande auxílio a revisão visual e a remoção dos parasitos apenas dos espécimes que serão coletados e incluídos em coleções científicas. Dick, C. W. & Miller, J. A. 2010. Streblidae. In: Brown, B. V.; Borkent, A.; Cumming, J. M.; Wood, D. M.; Woodley, N. E. & Zumbado, M. A. eds. Manual of Central American Diptera. vol. 2. Ottawa, NRC Research Press, p.1249-1260. l A. eds. Manual of Central American Diptera. vol. 2. Ottawa, NRC Research Press, p.1249-1260. l Eriksson, A.; Graciolli, G. & Fisher, E. 2011. Bat flies on phyllostomid hosts in the Cerrado region: component community, prevalence and intensity of parasitism. Memórias do Instituto Oswaldo Cruz 106(3):274-278. Garbino, G. S. T. & Tejedor, A. 2013. Natalus macrourus (Gervais, 1856) (Chiroptera: Natalidae) is a senior synonym of Natalus espirosantensis (Ruschi, 1951). Mammalia 77:237-240. Gardner, A. L. 2007. Trichobiinae Pela facilidade de captura e de manipulação do hospedeiro e a melhor visualização dos dípteros sobre o corpo de morcegos, vários artigos têm sido publicados sobre a ocorrência de dípteros ectoparasitos de morcegos no Brasil (por exemplo, Dias et al., 2009; Eriksson et al., 2011; Graciolli & Bianconi, 2007; Graciolli et al., 2010; Lourenço & Esbérard, 2011; Aguiar & Antonini, 2011). Além disso, artigos recentes sobre a taxonomia dessas famílias de dípteros ectoparasitos de morcegos têm facilitado a identificação dos gêneros e das espécies e despertado o interesse de estudantes e pesquisadores (Dick 46. Trichobius johnsonae Wenzel, 1966. Natalus macrourus, Bodoquena (24) (ZUFMS). 46. Trichobius johnsonae Wenzel, 1966. Natalus macrourus, Bodoquena (24) (ZUFMS). 47. Trichobius longipes (Rudow, 1871). Phyllostomus 47. Trichobius longipes (Rudow, 1871). Phyllostomus heringia, Série Zoologia, 107(supl.): e2017137, 2017. 5 Lista das espécies de Hippoboscoidea (Diptera)... Graciolli et al. & Miller, 2010; Graciolli, 2004; 2010; Graciolli & Azevedo, 2011; Graciolli & Carvalho, 2001a; 2001b; Graciolli & Dick, 2012; Graciolli & Moura, 2005), enquanto importantes contribuições sobre a taxonomia de hipoboscídeos neotropicais são mais escassos (Graciolli & Carvalho, 2003; Wood, 2010), sendo os mais importantes publicados a mais 40 anos (Bequaert, 1954; 1955; 1957; Maa, 1969; Peterson & Maa, 1970), por exemplo. A Fundação Ao Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq) (Proc. 475487/2010-9) pelo auxílio conferido ao projeto “Estutura de comunidades de artrópodos ectoparasitos de morcegos no Pantanal sul-matogrossense: uma análise por modelos nulos” e pela bolsa de produtividade de GG. À CAPES pela bolsa de mestrado de CLS e de doutorado de LFACC. À FAPESP pela bolsa (Proc. 2011/16621-9) de mestrado de DMCA. A Fernando Costa Straube e Rudi Ricardo Laps pelas informações sobre localidades e hospedeiros de hipoboscídeos. REFERÊNCIAS BIBLIOGRÁFICAS Mammals of South America. Marsupials, xenartharns, shrews, and bats. vol. 1. Chicago, The University Chicago Press. 669p. g p Graciolli, G. 2004. Nycteribiidae (Diptera, Hippoboscoidea) no Sul do , y ( p , pp ) Brasil. Revista Brasileira de Zoologia 21:971-985. _____. 2010. Nycteribiidae. In: Brown, B. V.; Borkent, A.; Cumming, J. M.; Wood, D. M.; Woodley, N. E. & Zumbado, M. A. eds. Manual of Central American Diptera. vol. 2. Ottawa, NRC Research Press, p.1261-1266. Graciolli, G.; Autino, A. G. & Claps, G. L. 2007. Catalogue of American Nycteribiidae (Diptera, Hippoboscoidea). Revista Brasileira de Entomologia 51:142-159. Agradecimentos. A Fundação de Apoio ao Desenvolvimento do Ensino, Ciências e Tecnologia do Estado de Mato Grosso do Sul (Fundect) e a Superintendência de Ciências e Tecnologia do Estado de Mato Grosso do Sul (Sucitec/MS) pelo convite de participação neste fascículo especial da Iheringia, Série Zoologia e o suporte financeiro para sua publicação. Graciolli, G. & Azevedo, A. A. 2011. Ectoparasites of bats (Chiroptera, Furipteridae), with a description of a new species of Synthesiostrebla Twonsend (Diptera, Streblidae) from Brazil. Revista Brasileira de Entomologia 55:501-504. Iheringia, Série Zoologia, 107(supl.): e2017137, 2017. 6 Lista das espécies de Hippoboscoidea (Diptera)... Graciolli et al. Graciolli, G.; Zórtea, M. & Carvalho, L. F. A. C. 2010. Bat flies (Diptera, Streblidae and Nycteribiidae) in a Cerrado area of Goiás state, Brazil. Revista Brasileira de Entomologia 54:511-514. Graciolli, G.; Azevedo, A. A.; Arzua, M.; Barros-Battesti, D. M. & Linardi, P. M. 2008. Artrópodos Ectoparasitos de Morcegos no Brasil. In: Pacheco, S. M.; Marques, R. V. & Esbérard, C. E. L. org. Morcegos no Brasil. Biologia, sistemática, ecologia e conservação. Porto Alegre, Armazém Digital, p.123-138. Revista Brasileira de Entomologia 54:511-514. Graciolli, G.; Zucco, C. A.; Cançado, P. H. D. & Mourão, G. 2011. Parasitism rates of Lipoptena guimaraesi and a new record of Lipoptena mazamae on Ozotoceros bezoarticus from the Central Pantanal wetlands in Brazil. Revista Brasileira de Parasitologia Veterinária 20:178-180. Graciolli, G. & Bianconi, G. V. 2007. Moscas ectoparasitas (Diptera, Streblidae e Nycteribiidae) em morcegos (Mammalia, Chiroptera) em área de Floresta com Araucária no estado do Paraná, sul do Brasil. Revista Brasileira de Zoologia 24:246-249. Lourenço, E. C. & Esbérard, C. E. L. 2011. Reinfestation of Streblidae ectoparasites (Diptera) in Carollia perspicillata (Linnaeus, 1758) (Chiroptera). Revista Brasileira de Parasitologia Veterinária 20:325- 330. Graciolli, G., Cárceres, N. C. & Bornschein, M. R. 2006. REFERÊNCIAS BIBLIOGRÁFICAS Novos registros de moscas ectoparasitas (Diptera, Streblidae e Nycteribiidae) de morcegos (Mammalia, Chiroptera) em áreas de transição cerrado- floresta estacional no Mato Grosso do Sul, Brasil. Biota Neotropica 6(2):1-4. Maa, T. C. 1969. A revised checklist and concise host index of Hippoboscidae (Diptera). Pacific Insects Monographies 20:25-204. i McAlpine, J. F. 1989. Phylogeny and classification of the Muscomorpha. In: MacAlpine, J. F. & Wood, D. M. eds. Manual of Neartic Diptera. vol. 3. Ottawa, Minister of Suply and Services. Monograph, 28, p.1397-1518. Graciolli, G. & Carvalho, C. J. B. 2001a. Moscas ectoparasitas (Diptera, Hippoboscoidea, Nycteribiidae) de morcegos (Mammalia, Chiroptera) do Estado do Paraná, Brasil. I. Basilia, taxonomia e chave pictórica para as espécies. Revista Brasileira de Zoologia 18(Supl.1):33-49. Peterson, B. V. & Maa, T. C. 1970. A new Lipoptena from Chile, with a key to New World species (Diptera – Hippoboscidae). The Canadian Entomologist 102:1117-1122. il Graciolli, G. & Carvalho, C. J. B. 2001b. Moscas ectoparasitas (Diptera, Hippoboscoidea) de morcegos (Mammalia, Chiroptera) do estado do Paraná. II. Streblidae: chave pictórica para gêneros e espécies. Revista Brasileira de Zoologia 18:907-960. Poinar, G. & Brown, A. 2012. The first fossil streblid bat fly, Enischnomyia stegosoma n. g., n. sp. (Diptera: Hippoboscoidea: Streblidae). Graciolli, G. & Carvalho, C. J. B. 2003. Hippoboscidae (Diptera, Hippoboscoidea) no estado do Paraná, Brasil: chaves de identificação, hospedeiros e distribuição geográfica. Revista Brasileira de Zoologia 20:667-674. Systematic Parasitology 81:79-86. Tiepolo, L. M. & Tomas, W. M. 2011. Ordem Artiodactyla. In: Reis, N. R. dos; Peracchi, A. L.; Pedro, W. A. & de Lima, I. P. orgs. Mamíferos do Brasil. 2ed. Londrina, Nélio R. dos Reis, p.293-313. Tiepolo, L. M. & Tomas, W. M. 2011. Ordem Artiodactyla. In: Reis, N. R. dos; Peracchi, A. L.; Pedro, W. A. & de Lima, I. P. orgs. Mamíferos dos; Peracchi, A. L.; Pedro, W. A. & de Lima, I. P. orgs. Mamíferos do Brasil. 2ed. Londrina, Nélio R. dos Reis, p.293-313. do Brasil. 2ed. Londrina, Nélio R. dos Reis, p.293-313. Graciolli, G. & Dick, C. W. 2012. Description of the second species of Joblingia Dybas & Wenzel. Systematic Parasitology 81:187-193. Wood, M.W. 2010. Hippoboscidae. In: Brown, B. V.; Borkent, A.; Cumming, J. M.; Wood, D. M.; Woodley N. E. & Zumbado, M. A. eds. Manual of Central American Diptera. vol. 2. Ottawa, NRC Research Press, p.1241-1248. Graciolli, G. & Moura, M. O. 2005. Basilia quadrosae sp. nov. (Diptera: Nycteribiidae), member of the ferruginea group, from Southern Brazil. Zootaxa 1087:33-38. Iheringia, Série Zoologia, 107(supl.): e2017137, 2017.
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Impactos Socioeconômicos das Plantações Florestais no Niassa, Moçambique
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Socioeconomic Impacts of Forest Plantations in Niassa, Mozambique Socioeconomic Impacts of Forest Plantations in Niassa, Mozambique Teresa Guila Nube1, Anadalvo Santos Juazeiro dos Santos2, Romano Timofeiczyk Junior2*, Ivan Crespo Silva3 Teresa Guila Nube1, Anadalvo Santos Juazeiro dos Santos2, Romano Timofeiczyk Junior2*, Ivan Crespo Silva3 1Ministério da Agricultura, Direção Nacional de Terras e Florestas, Maputo, Moçambique. 2Departamento de Economia Rural e Extensão, Universidade Federal do Paraná – UFPR, Curitiba/PR, Brasil. 3Departamento de Ciências Florestais, Universidade Federal do Paraná – UFPR, Curitiba/PR, Brasil. Floresta e Ambiente 2016;  23(1): 52-60 http://dx.doi.org/10.1590/2179-8087.038813 ISSN 1415-0980 (impresso) ISSN 2179-8087 (online) Artigo Original Floresta e Ambiente 2016;  23(1): 52-60 http://dx.doi.org/10.1590/2179-8087.038813 ISSN 1415-0980 (impresso) ISSN 2179-8087 (online) Artigo Original Floresta e Ambiente 2016;  23(1): 52-60 http://dx.doi.org/10.1590/2179-8087.038813 ISSN 1415-0980 (impresso) ISSN 2179-8087 (online) Floresta e Ambiente 2016;  23(1): 52-60 http://dx.doi.org/10.1590/2179-8087.038813 ISSN 1415-0980 (impresso) ISSN 2179-8087 (online) Artigo Original Impactos Socioeconômicos das Plantações Florestais no Niassa, Moçambique Niassa, Moçambique Resumo O objetivo deste trabalho foi avaliar os impactos socioeconômicos das plantações florestais nas comunidades da província do Niassa, Moçambique. Foram realizadas entrevistas semiestruturadas com 423 chefes de famílias residentes no entorno das empresas florestais. Os dados foram obtidos mediante aplicação de questionários direcionados aos gestores das empresas florestais e membros do governo, e analisados com uso de estatística descritiva, tendo-se considerado o período anterior e posterior à instalação das empresas florestais. Os resultados evidenciaram melhorias de condições de vida das famílias, sobretudo aquelas que têm emprego nas empresas florestais. Porém, a presença das empresas florestais reduziu a dependência e a acessibilidade das famílias em relação aos recursos florestais devido ao aumento das distâncias das fontes de obtenção. Palavras-chave: Empresas florestais, plantações em Moçambique, comunidades rurais. 1. INTRODUÇÃO com um alto índice de diversidade de espécies, mas com baixo índice de valor econômico (White, 1983, Gauslaa, 1989). Esse fato contribui para que o valor de Direito de Uso e Aproveitamento da Terra (DUAT), que é pago pelas empresas, seja muito baixo. Moçambique está localizado na África Austral, possui uma superfície total de 799.380 km2 e uma população estimada de 23,7 milhões de habitantes, dos quais cerca de 80% dependem dos recursos florestais para sua subsistência. A população moçambicana cresce em média 2,8% ao ano e apresenta altos índices de analfabetismo, com 55% das pessoas vivendo abaixo da linha da pobreza, onde a incidência da pobreza é muito maior nas zonas rurais. Com a grande procura de terras pelas empresas florestais para o estabelecimento de plantios com fins industriais e comerciais na província do Niassa, as comunidades locais providenciaram extensas áreas na expectativa de benefícios de emprego nessas empresas. Entretanto, existe pouca informação sobre os benefícios das empresas florestais para as comunidades, porém há necessidade de saber se os custos de abdicação das terras em troca de emprego nas empresas florestais são compensatórios. Por outro lado, existe um reconhecimento de que a maior parte da mão de obra utilizada pelas empresas florestais provém das comunidades locais, porém, informações sobre a influência dessas empresas na melhoria do nível de vida das referidas comunidades é quase inexistente. A agricultura é o setor fundamental para a economia do país, onde 85% da população depende dela para seu sustento (PNUD, 2012). Como consequência, cerca de 220 mil hectares de florestas perdem-se anualmente pelo desmatamento, tornando Moçambique um dos países com alta taxa de desmatamento, causado principalmente pela extração de madeira, lenha e fabricação de carvão, queimadas descontroladas, agricultura itinerante ou abertura de pequenas áreas de machambas dentro de florestas (Sitoe et al., 2012). Dentro desse contexto, este trabalho teve como objetivo principal avaliar os impactos socioeconômicos das plantações florestais em três distritos na província do Niassa. Os objetivos específicos procuraram caracterizar sob ponto de vista socioeconômico a situação das famílias antes e depois da instalação das empresas florestais; diagnosticar a situação socioeconômica das famílias com e sem emprego nas empresas florestais, e demonstrar os impactos das diferenças salariais no nível de vida das famílias. 1. INTRODUÇÃO Para reduzir a pressão sobre a floresta nativa, o governo de Moçambique decidiu em meados da década de 2000, através da apresentação do documento da Estratégia Nacional de Reflorestamento, promover as plantações florestais com espécies de rápido crescimento. Esta decisão começou a catalisar interesse das empresas privadas estrangeiras em investir em silvicultura. O grande atrativo para as empresas são as condições edafoclimáticas favoráveis para o desenvolvimento da silvicultura intensiva aliada à disponibilidade de terra. Estima-se que existem aproximadamente 7 milhões de hectares de terra aptas para plantios florestais, sendo a província do Niassa que detém maior área, com 2,4 milhões de hectares. Abstract The aim of this research was to assess the socioeconomic impacts of forest plantations in the householders’ livelihood in the Niassa province communities, northern Mozambique. Were conducted semi-structured interviews with 423 households in communities around the forest companies, forest plantation managers and the govern local senior members of the govern. The data collected were analyzed using descriptive statistics, considering the period before and after implementation of forestry companies. The results showed improvements in the livelihood of the householders, especially those who are employed in forestry companies. The presence of forestry companies reduced dependence and accessibility of families in relation to forest resources due to increasing distances from the sources of production. Keywords: Forestry companies, plantations in Mozambique, rural communities. Impactos Socioeconômicos das Plantações Florestais.. Floresta e Ambiente 2016; 23(1): 52-60 53 2.1. Descrição do local do estudo A terra é o grande atrativo para os investimentos florestais, não somente pela sua disponibilidade mas também pelo fato de que, segundo a legislação moçambicana, a terra pertence ao Estado e as comunidades rurais têm o direito de uso e aproveitamento das mesmas (Oram, 2010; Serra & Chicue, 2005). Normalmente as terras disponibilizadas pelas comunidades rurais para o reflorestamento são improdutivas para a prática da agricultura e com poucas ou nenhuma espécie de valor madeireiro (Landry, 2009). A zona norte de Moçambique é predominantemente coberta pelas savanas do miombo (Marzoli, 2007), que são florestas O estudo foi realizado na província do Niassa, localizada no noroeste de Moçambique, com uma área de 129 mil km2 e constituída por 16 distritos (Figura 1). A área de estudo foi identificada com base na existência dos seguintes fatores: (i) empresa florestal, (ii) população residente na área onde se encontram as plantações e (iii) pessoas da comunidade que trabalham nas empresas florestais. Foram selecionados os distritos de Lichinga, Lago e Sanga, regiões onde operam as empresas Floresta de Niassa, Chikweti Forest of Niassa e Niassa Green Resources, SA, respectivamente. Floresta e Ambiente 2016; 23(1): 52-60 4 Nube TG, Santos ASJ, Timofeiczyk R Jr, Silva IC 54 Figura 1. Localização da área de estudo. Figure 1. Localization of the study area. Figura 1. Localização da área de estudo. Figure 1. Localization of the study area. semiestruturadas direcionadas aos chefes dos agregados familiares com base em uma amostragem. Segundo Gil (2007), a entrevista, além de poder ser aplicada a um grande número de pessoas, permite colher informação de pessoas que não sabem ler nem escrever, visto que permite auxílio ao entrevistado e análise do seu comportamento não verbal. A amostragem conduzida foi de forma aleatória e toda a população teve a mesma probabilidade de ser selecionada. A unidade de amostragem é o agregado familiar. Segundo a classificação de Köppen, o clima da região é tropical úmido com verões quentes e chuvosos, invernos secos e friosaa. A precipitação média anual varia de 1.200 a 1.350 mm. As temperaturas médias anuais são de 21 a 23o C. A formação florestal nativa predominante na área é miombo decíduo seco e tardio. O miombo distingue-se de outras formações florestais e das savanas africanas pela predominância de três espécies da família Fabaceae, subfamília Caesalpinoideae, particularmente dos gêneros Brachystegia, Julbernardia e Isoberlinia (Frost, 1996; Ribeiro et al., 2008). a Exceto o distrito de Lichinga, que é influenciado pela altitude. 2.1. Descrição do local do estudo Para o efeito de amostragem, usou-se como base a população, assumindo que esta é homogênea em termos de atividades de produção e de renda. O tamanho da amostra foi calculado com base na fórmula de Rea & Parker (1997), que leva em consideração o erro amostral, o tamanho da população e o grau de confiança de 95% (Equação 1). O miombo constitui o tipo de vegetação mais importante da África Austral, cobrindo uma área de cerca de 2,7 milhões de km2 em sete países, nomeadamente: Angola, Congo RD, Malawi, Moçambique, Tanzânia, Zâmbia e Zimbábue, que fazem parte da lista dos países mais pobres dos do mundo (Chidumayo, 1993; Campbell et al., 1996; Dewees et al., 2010). 2 2 2 *(0,25)* *(0,25) ( 1)* Z N n Z N C p = + − α α (1) Em que: 2 2 2 *(0,25)* *(0,25) ( 1)* Z N n Z N C p = + − α α (1) 2 2 2 *(0,25)* *(0,25) ( 1)* Z N n Z N C p = + − α α (1) 2.2 Coleta de dados Em que: Em que: Os dados primários foram obtidos mediante aplicação de questionários direcionados aos gestores das empresas florestais e membros do governo, entrevistas n - tamanho da amostra calculada n - tamanho da amostra calculada Cp - intervalo de confiança em termos de proporçãoi Cp - intervalo de confiança em termos de proporção Zα - proporções da variação do nível de confiança (95%, 1.96) Cp - intervalo de confiança em termos de proporção Zα - proporções da variação do nível de confiança (95%, 1.96) Zα - proporções da variação do nível de confiança (95%, 1.96) a Exceto o distrito de Lichinga, que é influenciado pela altitude. N - número de famílias N - número de famílias Floresta e Ambiente 2016; 23(1): 52-60 Impactos Socioeconômicos das Plantações Florestais.. 55 moçambicana, pelo fato de os dados (tipos de bens) coletados se adequarem facilmente ao uso do critério. A partir da fórmula sugerida por Rea & Parker (1997), foi calculado o tamanho total da amostra (n=365) com base no número total da população (N=6316). A disponibilidade de recursos financeiros e as condições técnicas encontradas no campo permitiram entrevistar 432 chefes de famílias, número relativamente superior ao tamanho da amostra calculado. Assim, com o tamanho da amostra utilizado, o erro padrão é mínimo para a precisão desejada, o que significa que os dados têm valor estatístico. Para a classificação da população em classes econômicas de posses de bens, usou-se o critério ABEP (2012), que ajudou definir o nível socioeconômico dos chefes dos agregados familiares, residentes nos diferentes distritos. Assim, os pesos dos diferentes bens que os chefes dos agregados familiares possuem foram ajustados à realidade moçambicana, tomando como base o critério Brasil. Aos bens de difícil aquisição, devido aos preços elevados, foram também atribuídos maior pontuação, sucessivamente, conforme mostra a Tabela 1. Os dados secundários, necessários para complementar a informação dos entrevistados, como para confrontar com a informação obtida no campo, foram obtidos das pesquisas bibliográficas em livros encontrados em bibliotecas, nas empresas florestais e em documentos providenciados pelas autoridades governamentais, bem como da pesquisa em bibliotecas virtuais, repositórios e bases de dados. Na sequência, foram definidas três classes sociais a partir dos pesos atribuídos aos bens na Tabela 1, que foram usados para definir as classes sociais na Tabela 2. 2.2 Coleta de dados Foi aplicado o teste qui-quadrado para testar as seguintes hipóteses nulas de pesquisa: H10 = Não existem diferenças significativas na posse de bens entre os chefes de agregados familiares que trabalham e os que não trabalham em empresas florestais; H20 = A posse de bens não é determinada pelo nível salarial. Este trabalho tem carácter exploratório e descritivo, portanto, para o processamento e análise de dados recorreu à estatística descritiva. Os dados coletados foram processados no pacote Excel e programa SPSS. 18 (Statical Package for Social Science), em função do requerimento dos programas e das análises a serem feitas. A fim de analisar as diferenças salariais dos chefes dos agregados familiares que trabalham em empresas florestais, fez-se uma classificação dos salários baseada no salário mínimo estipulado pelo Governo para o setor agrícola, situando-se em 2.300,00 meticais (US$ 83). Todos os que recebem um valor abaixo do salário mínimo foram classificados com o nível salarial baixo, e acima do salário mínimo nível salarial alto, e os restantes classificados como de nível salarial médio. 3.1. Caracterização sociodemográfica e econômica das famílias O número total de famílias no entorno das empresas florestais é de 6.361 agregados. Do estudo foram feitas entrevistas com 432 chefes de agregados, dos quais 328 (74%) são chefiadas por homens e 104 (26%) por mulheres. A faixa etária com maior representatividade foi a dos adultos com idade igual ou superior a 40 anos ocupando 52% da amostra. Em relação ao nível de escolaridade, 37% chefes dos agregados familiares foram identificados como sendo analfabetos e 63% frequentaram a escola, sendo que a maioria frequentou até apenas 3ª classe e não sabem ler e escrever. Landry (2009) também encontrou resultados semelhantes aos colhidos neste trabalho, nos distritos de Lago e Sanga. Os resultados obtidos nesta pesquisa confirmam as assertivas de Enosse et al. (2009) e Landry (2009) sobre as principais culturas agrícolas produzidas na região. Observa-se que não houve nenhuma mudança na proporção e nem nas variedades de culturas produzidas antes e depois da implantação das empresas florestais. 3.4. Produtos florestais coletados pelas famílias Na Figura 3, apresentam-se os principais produtos florestais coletados pelos chefes dos agregados familiares. Observa-se que houve um decréscimo na procura desses produtos com a implantação das empresas florestais, com exceção da lenha. Isso deve-se ao fato 3.2. Origem da renda Atualmente, as principais atividades das famílias em torno das empresas florestais são produção agrícola e trabalho formal. Antes da instalação das empresas florestais, a adoção da agricultura era de 88,2% e atualmente é de 62,3%. Esta situação justifica-se pela presença dos projetos florestais que proporcionam emprego, com as pessoas abdicando da agricultura como atividade principal e passando para o emprego remunerado. Falcão (2009), Salomão & Matose (2007), Enosse et al. (2009) e Landry (2009) afirmam que, em Moçambique, 80% da população pratica a atividade agrícola como a principal fonte de renda Figura 2. Principais culturas agrícolas produzidas pelos chefes dos agregados familiares nos diferentes distritos Figura 2. Principais culturas agrícolas produzidas pelos chefes dos agregados familiares nos diferentes distritos estudados. Figura 2. Principais culturas agrícolas produzidas pelos chefes dos agregados familiares nos diferentes distritos estudados. A comercialização de produtos agrícolas e florestais, trabalhos domésticos, caça, trabalhos em empresas florestais, são as principais atividades praticadas pelos chefes dos agregados familiares nas regiões estudadas. Esperava-se que, com a presença das empresas florestais, ocorresse uma mudanças das atividades praticadas pelos chefes dos agregados familiares, o que não foi verificado, provavelmente devido ao reduzido número dos chefes de agregados familiares que trabalham em empresas florestais (aproximadamente 48%). Figure 2. Main agricultural crops produced by the households in the different districts Sampled. Figure 2. Main agricultural crops produced by the households in the different districts Sampled. Figura 3. Principais produtos florestais coletados pelos chefes dos agregados familiares. Figure 3. Main Forest Products collected by the householders. 3. RESULTADOS E DISCUSSÃO (Solanum tuberosum L.). O milho é produzido por 100% das famílias e base de alimentação, e 98% das famílias cultivam o feijão-manteiga, sendo esta cultura de grande importância para o sustento local e para o incremento da renda (Figura 2). 2.3. Análise de dados Para a análise das diferenças entre as classes socioeconômicas, foi usado o critério de avaliação de renda em vigor no Brasil (ASSOCIAÇÃO BRASILEIRA DE EMPRESAS DE PESQUISA - ABEP, 2012). Justifica‑se a adequação deste critério à realidade Tabela 1. Pesos atribuídos aos bens que os chefes dos agregados familiares possuem. Table 1. High score assigned to goods that the households own. DESIGNAÇÃO PESOS DESIGNAÇÃO PESOS DESIGNAÇÃO PESOS Casa melhorada 8 Gado 5 Rádio 2 Machamba 7 Bicicleta 4 Conta bancária 1 Motorizada 6 Telemóvel 3 Aves 1 Tabela 2. Definição de classes sociais. Table 2. Definition of classes. CLASSES DESIGNAÇÃO PONTOS Média A1 >18,0-37,0 Pobre A2 >10,0-18,0 Paupérrima B 0,0-10,0 Tabela 1. Pesos atribuídos aos bens que os chefes dos agregados familiares possuem. Table 1. High score assigned to goods that the households own. Tabela 1. Pesos atribuídos aos bens que os chefes dos agregados familiares possuem. Table 1. High score assigned to goods that the households own. Tabela 2. Definição de classes sociais. Table 2. Definition of classes. CLASSES DESIGNAÇÃO PONTOS Média A1 >18,0-37,0 Pobre A2 >10,0-18,0 Paupérrima B 0,0-10,0 Floresta e Ambiente 2016; 23(1): 52-60 Nube TG, Santos ASJ, Timofeiczyk R Jr, Silva IC 56 56 Figure 3. Main Forest Products collected by the householders. 3.3. Produtos agrícolas cultivados Figura 3. Principais produtos florestais coletados pelos chefes dos agregados familiares. Figura 3. Principais produtos florestais coletados pelos chefes dos agregados familiares. As principais culturas agrícolas produzidas pelas famílias na área de estudo são milho (Zea mays L), feijão-manteiga (Phaseolus vulgaris, L.) e batata-reno g g Figure 3. Main Forest Products collected by the householders. Floresta e Ambiente 2016; 23(1): 52-60 Impactos Socioeconômicos das Plantações Florestais... 57 de os chefes familiares possuírem uma fonte de renda capaz de adquirir outros produtos substitutos mais duráveis, tais como casas de alvenaria, e terem acessos às unidades sanitárias. Recentemente, empresas de telefonia móvel estão se estabelecendo nas zonas rurais e disponibilizando o sinal de comunicação. Enosse et al. (2009) relatam que apesar de a rede de telefonia móvel ainda não ser extensiva nos distritos, as pessoas que possuem telefone celular usam quando se deslocam para a capital da província do Niassa ou alguns pontos dos distritos com sinal para se comunicarem com os familiares. O aumento de 1% para 26% do número de chefes de agregados familiares com conta bancária deve-se ao fato de as empresas abrirem as contas para todos os funcionários, como forma de garantir segurança no pagamento dos salários. Com a presença das empresas florestais, foi verificada redução na produção de carvão vegetal. Este fato está associado ao emprego formal, uma vez que as pessoas trabalhando nas empresas florestais não dispõem de tempo para se dedicarem a esta atividade e, por outro lado, as empresas aumentaram das distâncias para o alcance da matéria-prima para a produção de carvão vegetal devido às restrições impostas às famílias nas áreas ao redor delas. Com a introdução das empresas florestais, verificou-se um aumento em aproximadamente 23,5% dos chefes dos agregados de famílias nas classes médias, e uma redução em 30% na classe paupérrima, indicativo de melhoria do nível de vida nas comunidades rurais (Figura 5). Segundo van Bodegom et al. (2008), em Moçambique, bem como em muitos outros países, existe uma forte concepção de que as empresas florestais ajudaram na redução da pobreza em zonas rurais, pela maximização de uso das terras não produtivas. As plantações florestais também podem ajudar a reduzir a pressão nas florestas nativas e providenciar benefícios ambientais. Garlipp & Foelkel (2009) relatam que as plantações florestais têm importante papel para mitigar ou reduzir a pobreza, tanto em países em desenvolvimento como em áreas de países desenvolvidos. 3.5. 3.3. Produtos agrícolas cultivados A evolução socioeconômica das famílias antes e depois da instalação das empresas Como se pode observar na Figura 4, a presença das empresas florestais propiciou mudanças na vida das comunidades rurais, particularmente em termos de aquisição de bens. Fica evidente que quase todos chefes de famílias que trabalham em empresas florestais aumentaram a aquisição dos bens, sendo a casa melhorada, conta bancária e telefone celular os bens que apresentaram maior variação. As pessoas com emprego formal têm oportunidade de promover melhorias em suas casas, pois a casa melhorada não acarreta custos anuais adicionais, como desembolso na compra de capim. Em Moçambique, a qualidade da habitação de uma família é um indicador aceito para a definição de riqueza, representando maior valor de investimentos em bens duráveis (Moçambique, 2010). Figura 5. Desempenho das classes sociais-económicas dos chefes de famílias no período anterior e posterior à instalação das empresas florestais. Figure 5. Performance of socio-economic classes of householders in the period before and after Forest Companies. Atualmente verifica-se um crescimento em 37,5% de famílias na posse de telefones celulares (Figura 4). Esta situação não está diretamente relacionada com a chegada das empresas florestais, mas sim pelo surgimento de novas tecnologias de comunicação e informação. Figura 4. Principais bens das famílias. Figure 4. Major household possessions. Figura 5. Desempenho das classes sociais-económicas dos chefes de famílias no período anterior e posterior à instalação das empresas florestais. Figura 5. Desempenho das classes sociais-económicas dos chefes de famílias no período anterior e posterior à instalação das empresas florestais. Figure 5. Performance of socio-economic classes of householders in the period before and after Forest Companies. l Figure 5. Performance of socio-economic classes of householders in the period before and after Forest Companies. Figura 4. Principais bens das famílias. Figure 4. Major household possessions. Figure 4. Major household possessions. Floresta e Ambiente 2016; 23(1): 52-60 Nube TG, Santos ASJ, Timofeiczyk R Jr, Silva IC 58 58 empresas florestais (α = 0,049*10-3**). Este aspecto é relevante entre as classes pobre e paupérrima e isto está relacionado com a renda baixa, variável e instável, quando comparados com os que possuem emprego nas empresas florestais e assim têm renda maior e fixa. Por outro lado, o teste χ² mostrou que não existem diferenças significativas para refutar a hipótese nula, quando a análise é feita entre os trabalhadores das empresas florestais (α = 0,097ns). 3.3. Produtos agrícolas cultivados A Tabela 3 apresenta as classes sociais das famílias com e sem emprego nas empresas florestais em cada distrito. Observa em todos os distritos a existência das três classes sociais para as famílias sem emprego. Para as famílias com emprego, a classe social paupérrima deixou de existir, ou seja, nenhuma pessoa com emprego formal pertence a esta classe social. Isto porque os trabalhadores das empresas florestais se beneficiam de emprego e recebem um salário que lhes permite sair da classe paupérrima, uma vez que passam a ter mais recursos financeiros para o consumo de bens. Observa-se também que a classe paupérrima não existe em todos os distritos, quando comparados aos trabalhadores das empresas florestais. Landry (2009), na sua pesquisa realizada no distrito de Lago, já havia advertido sobre a possibilidade da presença das empresas florestais criarem uma grande defasagem entre ricos e pobres, se todos os chefes de famílias não tivessem as mesmas oportunidades, o que se observa em todas as áreas onde as empresas florestais operam. Observa-se ainda que, para as famílias sem emprego, as classes pobre e paupérrima ocorrem com mais frequência. O distrito de Sanga se apresenta com maior percentagem (34,9%) de famílias da classe paupérrima, e Lago se apresenta com maior percentagem (25,6%) da classe média. Este cenário revela a condição de vida das famílias sem a intervenção dos projetos florestais. Em todos os distritos, a classe média encontra-se acima de 30%, com maior destaque para Lichinga, onde esta classe é maior 60%. Esta situação está relacionada com o fato de Lichinga ser a capital do distrito e os trabalhadores têm mais oportunidades de reinvestir o dinheiro que recebem das empresas florestais e gerar novas rendas. l No = Numbers of householders; SE = householders whidought employment in forest companies; E = householders with ent in the forest companies. em empresas florestais. Where: No = Numbers of householders; SE = householders whidought employment in forest companies; E = householders with employment in the forest companies. e: No = Números de famílias; SE = Chefes de famílias sem emprego em empresas florestais; E = Chefes de famílias com empr mpresas florestais. 3.6. Impactos das diferenças salariais no nível de vida A Tabela 4 apresenta as classes sociais dos trabalhadores dos três distritos e os respectivos níveis salariais. Observa-se que a maioria (52 trabalhadores) auferem salário médio, 45 trabalhadores possuem valor abaixo de um salário mínimo estipulado pelo governo de Moçambique para o setor agrícola, e uma minoria tem um salário alto. Esta situação está associada ao baixo nível de escolaridade das comunidades, uma vez que o salário é pago de acordo a categoria dos trabalhadores, com os de elevado nível de escolaridade auferindo alto salário. Para verificar as diferenças estatísticas, com base nos dados observados em campo, foi feito um teste estatístico χ² para os três distritos, baseando-se na hipótese nula de que não existem diferenças entre as classes de posse de bens nos três distritos. Estatisticamente há evidências significativas para rejeitar a hipótese nula quando comparadas as pessoas que não trabalham em Tabela 3. Classes sociais dos chefes dos agregados familiares com e sem emprego nas empresas por distrito. Table 3. Householders social classes with and whedought employment. Table 3. Householders social classes with and whedought employment. DISTRITO CLASSES SOCIAIS LICHINGA LAGO SANGA TOTAL Abs % Abs % Abs % Abs % SE Média 6 7,4 40 25,6 10 12,0 56 13,0 Pobre 62 76,5 77 49,4 44 53,0 183 42,4 Paupérima 13 16,0 39 25,0 29 34,9 81 18,8 TOTAL 81 156 83 320 E Média 15 60,0 21 42,0 12 32,4 48 11,1 Pobre 10 40,0 29 58,0 25 67,6 64 14,8 TOTAL 25 50 37 112l Floresta e Ambiente 2016; 23(1): 52-60 Impactos Socioeconômicos das Plantações Florestais... 59 Tabela 4. Classes sociais e níveis salariais dos trabalhadores nos três distritos. Table 4. Social classes and salary levels in the three districts. NÍVEL SALARIAL DISTRITOS CLASSES SOCIAIS ALTO MÉDIO BAIXO TOTAL Abs (%) Abs (%) Abs (%) Abs (%) LICHINGA Média 2 13,3 4 7,7 9 20 15 13,4 Pobre 0 0,0 0 0,0 10 22,2 10 8,9 LAGO Média 8 53,3 12 23,1 1 2,2 21 18,8 Pobre 0 0,0 24 46,2 5 11,1 29 25,9 SANGA Média 4 26,7 2 3,8 6 13,3 12 10,7 Pobre 1 6,7 10 19,2 14 31,1 25 22,3 TOTAL 15 52 45 112 Abs – Valor absoluto. Abs – Absolute values. • As empresas florestais trouxeram benefícios para as populações rurais e contribuem para a melhoria da qualidade de vida das famílias, sobretudo aquelas que trabalham nas empresas. *AUTOR(ES) PARA CORRESPONDÊNCIA Romano Timofeiczyk Junior Departamento de Economia Rural e Extensão, Universidade Federal do Paraná – UFPR, CEP 80420-030, Curitiba, PR, Brasil e-mail: romano.timo@gmail.com Romano Timofeiczyk Junior Departamento de Economia Rural e Extensão, Universidade Federal do Paraná – UFPR, CEP 80420-030, Curitiba, PR, Brasil e-mail: romano.timo@gmail.com STATUS DA SUBMISSÃO Recebido: 16 abr. 2013 Aceito: 25 jun. 2015 3.6. Impactos das diferenças salariais no nível de vida O distrito de Lago é o que se evidencia, apresentando‑se com elevada percentagem de trabalhadores (53,3%) pertencendo à classe social média com salário alto; por outro lado, tem menor percentagem (2,2%) na classe média com salário baixo. O nível salarial predominante nos distritos de Lichinga e Sanga são baixos. O resultado aqui encontrado reforça a constatação anteriormente referida, no que diz respeito à ampliação da classe média das famílias do distrito de Lago. • A instalação das empresas florestais possibilitou o aumento da classe média e a redução da classe social paupérrima. • De forma geral, observa-se a melhoria das condições dos chefes dos agregados familiares após a implementação das empresas florestais. Em geral, pode-se afirmar que em todos os distritos há uma tendência de os salários altos serem auferidos por uma minoria, e isto está relacionado com elevados níveis de analfabetismo, conforme referido anteriormente. No entanto, pelo teste estatístico qui-quadrado, partindo da hipótese nula de que “a posse de bens não é determinada pelo nível salarial”, constatou-se que para o nível de probabilidade (P ≤ 0,05), se comparado com os valores de alfa calculado (α = 0,033*10-8**; α = 0,08*10-34** e α = 0,011*10-26**) para os distritos de Lichinga, Lago e Sanga, respectivamente, que estatisticamente não foi encontrada nenhuma evidência suficiente para refutar que a posse de bens está associada ao nível salarial (rejeitou-se a hipótese nula). 4. CONCLUSÕES Associação Brasileira de Empresas de Pesquisas – ABEP. Critério de classificação econômica Brasil [online]. 2012 [citado em 2012 jul. 26]. Disponível em: http://www.abep. org/novo/Utils/FileGenerate.ashx?id=19 De acordo com os resultados obtidos na pesquisa, concluiu-se que: • As empresas florestais aumentaram a distância para o acesso aos recursos florestais, bem como diminuiu a dependência das comunidades em relação estes. Campbell B, Frost P, Byron N. Miombo woodlands and their use: overview and key issues. In: Campbell B, editor. The Miombo in transition: woodlands and welfare in Africa. Bogor, Indonesia: CIFOR; 1996. Floresta e Ambiente 2016; 23(1): 52-60 0 Nube TG, Santos ASJ, Timofeiczyk R Jr, Silva IC 60 Moçambique. Ministério da Planificação e Desenvolvimento. Direcção Nacional de Estudos e Análise de Políticas. Pobreza e o bem estar em Moçambique: terceira avaliação nacional. Maputo: Ministério da Planificação e Desenvolvimento; 2010. Chidumayo EN. Silvicultural characteristics and management of miombo woodland. In: Piearce GD, Gumbo DJ, editores. Proceedings of an International Syposium of the Ecology and Management of Indigenous Forests in Southern Africa; 1992 July 27-29; Victoria Falls. Harare: Zimbabwe Forestry Commission; 1993. Chidumayo EN. Silvicultural characteristics and management of miombo woodland. In: Piearce GD, Gumbo DJ, editores. Proceedings of an International Syposium of the Ecology and Management of Indigenous Forests in Southern Africa; 1992 July 27-29; Victoria Falls. Harare: Zimbabwe Forestry Commission; 1993. Organization for Refuge, Asylum & Migration – ORAM. Documento de Apresentação na Reunião Nacional sobre Delimitação de Terras Comunitárias. Maputo: ORAM; 2010. Organization for Refuge, Asylum & Migration – ORAM. Documento de Apresentação na Reunião Nacional sobre Delimitação de Terras Comunitárias. Maputo: ORAM; 2010. Dewees PA, Campbell BM, Katerere Y, Sitoe A, Cunningham AB, Angelsen A, et al. Managing the Miombo woodlands of Southern Africa: policies, incentives and options for the rural poor. Journal of Natural Resources Policy Research, 2010;2(1):57-73. Programa das Nações Unidas para o Desenvolvimento – PNUD. Indicadores rápidos de Moçambique: unidade de análises de políticas e economia [online]. Brasília: PNUD; 2012 [citado em 2012 out. 2]. Disponível em: http//:www. undp.org.mz/.../Indicadores%20Rápidos%20de% Enosse C, Pangaya F, Nhambirre G. Estudo sócio econômico da área da Malonda TreeFarm Distrito de Sanga, Posto administrativo de Unango. Lichinga; 2009. Rea L, Parker R. Designing and conducting survey reserch: a comprehensive guide. San Francisco: Jossey-Bass Publishers; 1997. Rea L, Parker R. Designing and conducting survey reserch: a comprehensive guide. San Francisco: Jossey-Bass Publishers; 1997. Falcão MP. Política agrícola e política Agrária: experiência Moçambicana. 4. CONCLUSÕES In: Almeida J, organizador. Políticas Públicas e Desenvolvimento Rural: percepções e perspectivas no Brasil e Moçambique. Porto Alegre: UFRGS; 2009. Falcão MP. Política agrícola e política Agrária: experiência Moçambicana. In: Almeida J, organizador. Políticas Públicas Ribeiro NS, Shugart HH, Swap RJ, Okin GS. Five-years period of fire regime in the Miombo woodlands of Niassa Reserve, Mozambique. International Journal of Wildland Fire; 2008:101-133. Frost P. The ecology of Miombo woodlands. In: Campbell B, editor. The Miombo in transition: woodland and welfare in Africa. Bogor, Indonesia: CIFOR; 1996. Salomão A, Matose F. Towards community based forest management of miombo woodlands in Mozambique [online]. Bogor: CIFOR; 2007. [citado em 2012 mar. 22]. Disponível em: http//www.cifor.org/miombo/docs/ CBNRMMozambique1207.Pdf Garlipp R, Foelkel C. O papel das florestas plantadas para atendimento das demandas futuras da sociedade. In: Anais do XIII Congresso Florestal Mundial/FAO; 2009; Buenos Aires. Buenos Aires: Sociedade Brasileira de Silvicultura; 2009. p. 1-18. [citado em 2012 maio 22]. Disponível em: http://www.sbs.org.br/destaques_POSITIONPAPER.pdf Serra C jr, Chicue. J. Lei de Florestas e Fauna Bravia Comentada. Maputo: Centro de Formação Jurídica e Judiciária; 2005. Serra C jr, Chicue. J. Lei de Florestas e Fauna Bravia Comentada. Maputo: Centro de Formação Jurídica e Judiciária; 2005. Gauslaa Y. Management and regeneration of tropical woodlands with special reference to Tanzanian conditions: a literature review. Lidia 1989; 2:37-112. Sitoe A, Salomão A, Wertz-Kanounnikoff S. O contexto de REDD+ em Moçambique: causas, actores e instituições. Bogor: CIFOR; 2012. Publicação Ocasional n. 76. Gil AC. Como elaborar projectos de pesquisa. 4. ed. São Paulo: Atlas; 2007. Landry, J. Analysis of the potential socio-economic impact of establishing plantation forestry on rural communities in Landry, J. Analysis of the potential socio-economic impact of establishing plantation forestry on rural communities in Sanga District, Niassa province, Mozambique [Dissertação]. Cidade do Cabo: Universidade de Stellenbosch; 2009. van Bodegom, AJ, van den Berg J, van der Meer P. Forests plantations for sustainable production in the tropics: key issues for decision-makers. Wageningen International, 2008:1-11. Sanga District, Niassa province, Mozambique [Dissertação]. Cidade do Cabo: Universidade de Stellenbosch; 2009. Marzoli A. Inventário florestal nacional: avaliação integrada da floresta em Moçambique (AIFM). Maputo: Direção Nacional de Terras e Florestas; 2007. White F. The vegetation of Africa. Place de Fontenoy: UNESCO; 1983.
https://openalex.org/W4384922933
https://link.springer.com/content/pdf/10.1007/s10548-023-00989-2.pdf
English
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Timing of Allocentric and Egocentric Spatial Processing in Human Intracranial EEG
Brain topography
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Brain Topography (2023) 36:870–889 https://doi.org/10.1007/s10548-023-00989-2 Brain Topography (2023) 36:870–889 https://doi.org/10.1007/s10548-023-00989-2 ORIGINAL PAPER Abstract Spatial reference frames (RFs) play a key role in spatial cognition, especially in perception, spatial memory, and naviga­ tion. There are two main types of RFs: egocentric (self-centered) and allocentric (object-centered). Although many fMRI studies examined the neural correlates of egocentric and allocentric RFs, they could not sample the fast temporal dynamics of the underlying cognitive processes. Therefore, the interaction and timing between these two RFs remain unclear. Taking advantage of the high temporal resolution of intracranial EEG (iEEG), we aimed to determine the timing of egocentric and allocentric information processing and describe the brain areas involved. We recorded iEEG and analyzed broad gamma activity (50–150 Hz) in 37 epilepsy patients performing a spatial judgment task in a three-dimensional circular virtual arena. We found overlapping activation for egocentric and allocentric RFs in many brain regions, with several additional egocentric- and allocentric-selective areas. In contrast to the egocentric responses, the allocentric responses peaked later than the control ones in frontal regions with overlapping selectivity. Also, across several egocentric or allocentric selective areas, the egocentric selectivity appeared earlier than the allocentric one. We identified the maximum number of egocen­ tric-selective channels in the medial occipito-temporal region and allocentric-selective channels around the intraparietal sulcus in the parietal cortex. Our findings favor the hypothesis that egocentric spatial coding is a more primary process, and allocentric representations may be derived from egocentric ones. They also broaden the dominant view of the dorsal and ventral streams supporting egocentric and allocentric space coding, respectively. Keywords  Intracranial EEG · High-frequency gamma activity · Reference frames · Allocentric · Egocentric · Spatial judgment ranial EEG · High-frequency gamma activity · Reference frames · Allocentric · Egocentric · Spa Sofiia Moraresku1,2  · Jiri Hammer3  · Radek Janca4  · Petr Jezdik4  · Adam Kalina3  · Petr Marusic3  · Kamil Vlcek1 Sofiia Moraresku1,2  · Jiri Hammer3  · Radek Janca4  · Petr Jezdik4  · Adam Kalina3  · Petr Marusic3  · Kamil Vlcek1 Received: 8 December 2022 / Accepted: 10 July 2023 / Published online: 21 July 2023 © The Author(s) 2023 Introduction 2020), the perception-action model still provides a useful framework for understanding the visuospatial functions. with its egocentric form, i.e. the inability of patients to per­ ceive space on the contralesional side of their body, while lesions including the occipito-temporal areas were related to the allocentric neglect, i.e. inability of patients to perceive the contralesional side of individual objects, independently of their own position (Chechlacz et al. 2012; Grimsen et al. 2008). However, a few fMRI studies found no clear distinction between dorsal and ventral stream activity for egocentric and allocentric processing, respectively. In an experimental paradigm with only a verbal description of spatial relations and without the visual presentation of the task, Zaehle et al. (2007) found that inferior and superior parietal lobules (dor­ sal areas) were more active in the allocentric task compared to the egocentric one. The greater allocentric activation in the parietal cortex may be associated with additional efforts to mentally translate object-relative (i.e. allocentric) spa­ tial locations into new egocentric positions, needed for the behavioral response (Filimon 2015). Weniger et al. (2010) studied spatial navigation in a virtual maze without any landmarks, whereby forcing participants to use an egocen­ tric strategy, and found activation in the parahippocampal and lingual gyri (i.e., in the ventral stream). Other studies linked the hippocampal activation with egocentric-updating processes (Gomez et al. 2012, 2014). For instance, a patient with bilateral hippocampal damage had difficulties with tasks requiring processing and integration of egocentric self-motion information, while his performance in allocen­ tric tasks was comparable to the control group (Gomez et al. 2012). Also, a recent meta-analysis (Li et al. 2021) examin­ ing neural representations of RFs during spatial navigation in humans found a stronger activation for the allocentric RF in the middle frontal gyrus and cerebellar culmen, and common clusters of activation in the parahippocampal and lingual gyri, as well as the precuneus. In addition, according to another recent meta-analysis, activity associated with the allocentric and egocentric RFs across various experimen­ tal paradigms converges in the right parietal and the right frontal cortex (Derbie et al. 2021a). Therefore, neural pro­ cesses underlying egocentric and allocentric RFs seem to be at least partially overlapping, with both visual streams and frontal cortex engaged in two RFs. Introduction Communicated by Paul Sauseng. Spatial reference frames (RFs) shape our understanding of many cognitive processes involved in spatial cogni­ tion, such as perception, performing actions in space, and navigation. RFs also play a crucial role in spatial memory allowing information storage to be organized into various coordinate systems. Broadly speaking, in the egocentric RF, the locations of objects are encoded with respect to the posi­ tion and heading of the subject, while in the allocentric RF, they are encoded relative to each other or to environmental landmarks and do not depend on the position of the subject (Klatzky 1998). Sofiia Moraresku sofiia.moraresku@fgu.cas.cz Kamil Vlcek kamil.vlcek@fgu.cas.cz 1 Laboratory of Neurophysiology of Memory, Institute of Physiology, Czech Academy of Sciences, Videnska 1083, 142 20, Prague, Czechia 2 Third Faculty of Medicine, Charles University, Prague, Czechia 3 Department of Neurology, Second Faculty of Medicine, Charles University and Motol University Hospital, Prague, Czechia It has been suggested that separate neural circuits support these two types of spatial coding. The well-known percep­ tion-action model (Goodale and Milner 1992; Goodale et al. 2004) implicates that the dorsal (in the parietal cortex) 4 Department of Circuit Theory, Faculty of Electrical Engineering, Czech Technical University in Prague, Prague, Czechia 1 3 Brain Topography (2023) 36:870–889 871 and ventral (in the temporal cortex) streams process visual information for different purposes, i.e., for motor action and conscious perception, respectively. According to this model, the dorsal stream needs to compute the exact position of the target relative to the subject to perform accurate goal- directed actions in real-time. For example, to grasp a cup of coffee successfully, one needs to know its exact position relative to themselves. However, the dorsal stream is not unitary; it seems to consist of three sub-pathways with dis­ tinct functions (Kravitz et al. 2011). The parieto-prefrontal, parieto-premotor, and parieto-medial temporal pathways presumably support both conscious and non-conscious visuospatial processing, including spatial working memory, visually guided action, and navigation, respectively. In con­ trast, the ventral stream computes the size, location, or ori­ entation of an object primarily with respect to other objects or landmarks in the environment to perceive or remember that object. Therefore, this model associates egocentric and allocentric coding with the dorsal and ventral visual streams, respectively. Although recent studies suggest the two streams are interconnected and more integrated (Hutchison and Gallivan 2018; Ray et al. Stimuli and Task We used an Unreal Editor (UT 2004 EpicGames, 2004) to create 3D scenes of the virtual environment of a circular arena (imitating Morris water maze, see e.g., Fajnerova et al. 2014) containing three objects: a yellow mark located at the wall and red and white balls (see Fig. 1). A total of 128 unique images of 3D scenes were produced with variable mark and ball positions and a variable point of view. Dur­ ing the experiment, patients were asked to judge which ball was closer to their current point of view (egocentric condi­ tion) or closer to the yellow mark (allocentric condition). In addition, we employed a control condition with similar low- level visual, attentional, and motor components, irrelevant for the reference frame use, whereby patients were asked to judge which ball was red. Each image was used three times, i.e., under egocentric, allocentric, and control conditions, respectively. To prevent the subjects from using alternative non-spatial strategies (e.g., making a choice based on appar­ ent object-size characteristics or two-dimensional (2D) on- screen distances), we created several types of images that differed in terms of the strategies patients may potentially employ instead of spatial estimates. For example, in half of the images, egocentric and allocentric distance estima­ tion was congruent: the same ball was closer to the patients and the yellow mark. In contrast, in the other half of the images, egocentric and allocentric distance estimation did not correspond: the ball that was closer to the subject was further from the yellow mark (supplementary Fig. S1A). In some images, allocentric estimation was the same in three- dimensional space and the two-dimensional coordinates of the screen (Allo 3D = 2D), while in others, it differed - the ball that was closer to the yellow mark in three-dimensional space was further in two-dimensional coordinates of the screen (Allo 3D ≠ 2D, supplementary Fig. S1B, Fig. S2). Furthermore, the images differed in the relative size of the correct ball within the egocentric coordinates - in some images, the ball that was closer to the subject was larger, but in others, it was smaller (supplementary Fig. S1C). Simi­ larly, the images differed in terms of the allocentric coor­ dinates - the smaller or larger ball was closer to the yellow mark (supplementary Fig. S1D). Stimuli and Task We expected the estimates using a three-dimensional mental model of the scene to be the only consistently successful strategy in such an experi­ mental design. Th i l d i l 30 i d In the current study, taking advantage of the high tempo­ ral resolution of iEEG, we aimed to disentangle the timing of egocentric and allocentric information processing across brain regions involved in spatial perception and ascertain whether they show dissociated timing patterns for egocen­ tric and allocentric RFs analogous to PPA. Thus, our objec­ tive was to broaden the results of Bastin et al. (2013) study on other brain regions. We employed a spatial distance esti­ mation task, similar to previous studies (Committeri et al. 2004; Bastin et al. 2013), but here using a three-dimensional (3D) circular virtual arena. The task for the subjects was to estimate which of the two objects on the floor was closer (i) to a landmark at the wall, assuming allocentric RF, or (ii) to the subject, assuming egocentric RF. In our analysis, we focused on broadband gamma activity (BGA, 50–150 Hz) as it has a strong positive correlation with the fMRI blood- oxygen-level-dependent (BOLD) signal (Mukamel et al. 2005) and local neuronal firing rate (Manning et al. 2009), and has also been used as a general index of cortical pro­ cessing (Lachaux et al. 2012) in many cognitive and motor tasks (Bastin et al. 2013; Musch et al. 2014; Hammer et al. 2016; Vlcek et al. 2020). Assuming partially overlapping neural processes underlying egocentric and allocentric RFs, we expected to find BGA responses evoked by both ego­ centric and allocentric RFs in frontal, temporal and parietal areas, with temporally separated processes for egocentric and allocentric RFs, similarly to scene processing stages found in PPA (Bastin et al. 2013). More specifically, in this fronto-temporo-parietal network, we expected to observe a delayed activity for the allocentric RF compared to the ego­ centric RF, based on the premise that, during scene visual processing, allocentric representations are derived via men­ tal transformations of primary egocentric ones (Byrne et al. 2007; Filimon 2015). Similarly, we expected to find the ear­ lier egocentric selectivity in the egocentric-selective regions than the allocentric selectivity in allocentric-selective brain regions. The experiment lasted approximately 30 min and con­ sisted of 384 test trials (128 per condition) divided into eight sessions. Each session included three blocks consisting of 16 trials. Materials and Methods intracranial EEG (iEEG) study has investigated the encod­ ing of RFs in iEEG, concentrating mostly on the parahip­ pocampal place area (PPA). The authors described several scene processing stages, with a common phase for allocen­ tric and egocentric processing at 400–600 ms after stimulus onset, followed by a specific allocentric processing stage at 600–800 ms (Bastin et al. 2013). Still, it is unclear whether other brain areas involved in spatial processing, especially those with overlapping activity for egocentric and allocen­ tric RFs, share timely separated processes as in PPA. Introduction The distinction between neural circuits underlying egocentric and allocentric RFs and their localization in the dorsal and ventral streams is thus still inconclusive.f The results of many studies have shown evidence sup­ porting this association between two visual streams and two spatial RFs. A series of fMRI studies investigated neural correlates of allocentric and egocentric RFs during spatial judgment and navigation tasks and showed the involve­ ment of separate brain areas for two types of spatial cod­ ing. Specifically, egocentric RF use was accompanied by dominant activity in the superior parietal lobule, precuneus, superior, middle and inferior frontal gyri (Committeri et al. 2004; Galati et al. 2000; Parslow et al. 2004; Rosenbaum et al. 2004; Ruotolo et al. 2019; Saj et al. 2014), while allo­ centric RF use was supported by activation in the lateral and ventromedial occipito-temporal cortex (Committeri et al. 2004; Galati et al. 2000; Ruotolo et al. 2019; Saj et al. 2014), and also in the hippocampus in spatial navigation studies (Hirshhorn et al. 2012; Iaria et al. 2007; Jordan et al. 2004; Maguire et al. 1998; Rodriguez 2010; Spiers and Maguire 2007; see also review Moraresku and Vlcek 2020). Egocentric and allocentric coding are tightly connected with spatial attentional control, which in the healthy brain has been linked to the activation of a distributed frontoparietal attention network (Corbetta and Shulman 2002; Szczepan­ ski et al. 2010). The influence of spatial attention control on the two types of spatial processing has been shown in stud­ ies of brain-damaged patients suffering from hemispatial neglect. Hemispatial neglect is characterized by the inability to direct attention to the contralateral visual field. Lesions only to the fronto-parietal areas were more often associated Moreover, egocentric and allocentric RFs may also differ in the temporal profile of neural processing. Almost all the previous studies about egocentric and allocentric RFs used functional neuroimaging methods with an inherently slow temporal resolution, which mostly showed only the involve­ ment of specific brain areas but not the temporal dynam­ ics of the underlying cognitive processes. To date, only one 1 3 Brain Topography (2023) 36:870–889 872 Stimuli and Task Each block was assigned to one particular con­ dition (control, egocentric, or allocentric), but the order of 1 3 1 3 Brain Topography (2023) 36:870–889 Fig. 2  The plot of all 4586 recorded channels (including also hetero­ topic cortex channels with inaccurate MNI coordinates, excluded from all analyses) across 37 patients on a standard MNI brain in the (A) sagittal, (B) coronal, and (C) axial plane. In total, 546 active channels showing a significant response relative to the baseline to at least one condition - control, egocentric, or allocentric - are plotted in shades of red (the darker shade represents the higher response magnitude); non-responding channels are plotted in black. P, posterior; A, anterior; L, left; and R, right Fig. 1  The experimental design of the task. Stimuli were delivered in blocks; each block was assigned to one particular condition: control, egocentric, or allocentric. The task was to judge which ball was closer to the current point of view of the participant (egocentric) or closer to the yellow mark (allocentric). In the control condition, participants were required to choose which ball was red. The subjects pressed either a left or right arrow on the keyboard to indicate the ball of their choice. The lower timeline shows the timing of each trial 873 Brain Topography (2023) 36:870–889 873 Fig. 1  The experimental design of the task. Stimuli were delivered in blocks; each block was assigned to one particular condition: control, egocentric, or allocentric. The task was to judge which ball was closer to the current point of view of the participant (egocentric) or closer to the yellow mark (allocentric). In the control condition, participants were required to choose which ball was red. The subjects pressed either a left or right arrow on the keyboard to indicate the ball of their choice. The lower timeline shows the timing of each trial o hetero­ ded from the (A) channels least one condition - control, egocentric, or allocentric - are plotted in shades of red (the darker shade represents the higher response magnitude); non-responding channels are plotted in black. P, posterior; A, anterior; L, left; and R, right Fig. 2  The plot of all 4586 recorded channels (including also hetero­ topic cortex channels with inaccurate MNI coordinates, excluded from all analyses) across 37 patients on a standard MNI brain in the (A) sagittal, (B) coronal, and (C) axial plane. Patients A total of 37 patients (23 women; from 19 to 54 years old, median age 32 years old; education level: four primary school, 24 secondary school, and nine college) with drug- resistant epilepsy participated in our study from the Motol Epilepsy Center in Prague. The patients underwent intracra­ nial EEG (iEEG) monitoring for precise localization of the epileptic seizure onset zone before surgery. All the patients signed an informed consent to participate and the study was approved by the Ethics Committee of Motol University Hospital. All the patients had normal or corrected to normal vision. We focused on the analysis of broadband gamma activity (BGA, 50–150 Hz) as it has a strong positive correlation with the fMRI BOLD signal (Mukamel et al. 2005; Oje­ mann et al. 2010) and local neuronal firing rate (Manning et al. 2009). Instantaneous amplitude was estimated using the following procedure (the same as in Vlcek et al. 2020): the entire recording dataset was band-pass filtered in consecutive non-overlapping 5 Hz frequency bands in the broad gamma range (e.g., 50–55, 55–60, …, 145–150 Hz). For each fre­ quency band, the amplitude envelope was extracted using a Hilbert transform; the obtained envelope was downsampled to 64 Hz, resulting in a time resolution of 15.625 ms. Subse­ quently, the envelope of each band was divided by its mean value over the entire recording session, effectively whiten­ ing the broad frequency band and compensating for the 1/f Stimuli and Task At the end of each block, the patients were given feedback on their perfor­ mance including the number of correct responses and their average reaction time to motivate them to perform the task correctly. The test trials were preceded by a training session with shortened blocks consisting of five trials per condition and feedback for the patients after each trial. Because of the large interindividual variability between the patients dur­ ing the training session, these data were not included in the analysis and were not counted in the 384 test trials. iEEG Analysis We used a custom package developed in our laboratory (freely available at https://github.com/kamilvlcek/iEEG_ scripts/releases/tag/v2.0.0) in MATLAB 9.4 (Mathworks, Inc.) to perform the time-frequency analysis of iEEG data (Vlcek et al. 2020). First, we resampled all the data to 512 Hz and excluded the electrode contacts with obvious artifacts from further analysis. From the entire iEEG recording, we computed bipolar derivations between adjacent contacts to suppress contributions from distant neuronal assemblies and considered bipolar iEEG signals originating from a cortical volume centered between two contacts. Here, we refer to one bipolar contact pair as a ‘channel’. When the channel was derived from two contacts in a different brain structure, we labeled it with the structure with a larger uni­ lateral response. In total, iEEG activity was recorded from 4586 bipolar channels (see Fig. 2) from 37 patients, with the prevalent number of recording sites in the right hemisphere (3302, 72%). Visual stimuli were delivered using the PsychoPy 1.84 environment (Peirce et al. 2019) on a 15.6-inch TFT note­ book monitor with a refresh rate of 60 Hz. The monitor was positioned approximately 60  cm from the subject’s eyes, making the stimuli cover 10° of the visual field. The stimu­ lus presentation and the EEG recording were synchronized using TTL pulses sent to an EEG acquisition PC with each stimulus. Stimuli and Task In total, 546 active channels showing a significant response relative to the baseline to at least one condition - control, egocentric, or allocentric - are plotted in shades of red (the darker shade represents the higher response magnitude); non-responding channels are plotted in black. P, posterior; A, anterior; L, left; and R, right condition - control, egocentric, or allocentric - are plotted in shades of red (the darker shade represents the higher response magnitude); non-responding channels are plotted in black. P, posterior; A, anterior; L, left; and R, right Fig. 2  The plot of all 4586 recorded channels (including also hetero­ topic cortex channels with inaccurate MNI coordinates, excluded from all analyses) across 37 patients on a standard MNI brain in the (A) sagittal, (B) coronal, and (C) axial plane. In total, 546 active channels showing a significant response relative to the baseline to at least one 1 3 1 3 1 3 Brain Topography (2023) 36:870–889 874 the suspected origin of their seizures. Each electrode had a diameter of 0.8 mm and consisted of eight to 18 contacts of 2 mm in length, 1.5 mm apart (DIXI Medical Instruments). Postimplantation CT coregistered to preimplantation MRI was used to identify the positions of electrode contacts in each patient. The anatomical positions of the electrode contacts were visually verified by an experienced neurolo­ gist. The contact positions were normalized to the Montreal Neurological Institute (MNI) space using standard Statisti­ cal Parametric Mapping algorithms (SPM 12). All coordi­ nates (x, y, z) are given in MNI space. The iEEG signal was recorded using two different video-EEG monitoring sys­ tems: Natus NicoleteOne (in 22 patients) or Natus Quantum. The data were sampled at 512, 2048, or 8000 Hz, depending on the amplifier, using a reference electrode located in the white matter. blocks was counterbalanced, with a pause between them of a subject-controlled length. At the beginning of each block, the patients received simple on-screen instructions about the condition in the upcoming block. The patients were required to press a key to start the block; after which a series of six­ teen 3 s trials followed. Each trial included the presenta­ tion of a three-dimensional scene for 1.5 s, followed by the presentation of a white fixation cross for 1.5 s. The patients answered the question using the arrows on a keyboard: left ball = left arrow, right ball = right arrow. 1 3 Electrode Implantation and Intracranial EEG Recordings not within 3s after the stimulus) behavioral response and the blocks of trials if the mean accuracy of that block was below 75%, implying that the patient did not understand the instruction of the block and responded close to the chance level. of channels ‘allocentric-selective’, i.e., channels showing a significantly higher response for allocentric than for egocen­ tric condition and channels showing a significantly higher response for allocentric than for control condition but at the same time, without a significant difference between egocen­ tric and control conditions (see Fig. 4B). The same prin­ ciple was behind labeling ‘egocentric-selective’ channels (see Fig. 4A). The third category, labeled ‘spatial-selective’, consisted of channels in which both allocentric and egocen­ tric responses were significantly higher than the control (see Fig. 4C). We grouped these three categories of channels based on their anatomical locations (neurology labels from a neurolo­ gist according to Mai et al. 2015 and MNI coordinates) into nine brain regions (regions of interest, ROIs, listed with details in the Results section). To ensure the inter-subject reproducibility of our results, we further focused only on areas that included channels from at least three different patients (Lachaux et al. 2012). This left us with a set of channels of interest (ChOIs), which were used in the fol­ lowing two analyses. For these nine ROIs, we applied the χ² test to check whether the proportion of egocentric-selective, allocentric-selective, and spatial-selective channels was the same in each brain region. p We used BGA responses to identify ‘active’ channels showing a significant response for at least one condition compared to the baseline. For each channel, we compared the average BGA for all trials of the respective condition during the pre-stimulus interval (-500–0 ms) with all the time points during the post-stimulus period (0–1500 ms) using a Wilcoxon signed-rank test corrected for multiple comparisons across the time samples (because of the non- normal data distribution and similar to Bastin et al. 2013; Musch et al. 2014; Vlcek et al. 2020) with a false discovery rate (FDR) procedure (Genovese et al. 2002). As a conser­ vative estimate, we used a sliding window of six samples (93.75 ms) with the highest p-value. If there was a signifi­ cant difference at any time point relative to the baseline for a selected condition, the channel was considered active. We found 801 such channels. Electrode Implantation and Intracranial EEG Recordings Of these, we excluded 255 channels localized in the white matter or heterotopic cortex and those showing very late response connected to the key press (i.e., when the BGA peak was more than 800 ms after the stimulus onset, and on the plot of all individual epochs appeared aligned to the key press time) or containing obvi­ ous artifacts. The remaining 546 channels comprised the pool of active channels (see Fig. 2 for their positions in the brain). g Using the ChOIs, we performed a second analysis to characterize the responses to each condition across the ROIs, independent of the channel selectivity. To specify the time course of responses, we applied two measures of temporal dynamics based on our BGA sampling frequency (64 Hz): onset latency - the first time bin at which a signifi­ cant p-value was observed relative to the baseline (tsig), and peak latency - the time when the power change of response reached 90% of its maximum relative to the baseline for the first time (t90). Also, we compared the magnitude of the response - the maximal increase of BGA in the percentage of baseline activity - across brain regions. To compare all these measures, we used two-way mixed ANOVA (similar to Bastin et al. 2013; Musch et al. 2014; Vlcek et al. 2020) with the within-subject factor Condition and between-sub­ ject factor ROI with a post hoc Tukey HSD test to correct for multiple comparisons (Abdi & Williams 2010) with a significance level of p < 0.05. In the third analysis, also using the ChOIs, we more accu­ rately characterized the temporal dynamics associated with egocentric and allocentric coding during the post-stimulus period. To avoid the jitter in the BGA temporal profile and arrive at a statistically more robust estimate of the temporal dynamics, we averaged the response in each condition over 100 ms time bins (similar to Bastin et al. 2013 and Vlcek et al. 2020). Then, we performed a three-way mixed ANOVA with within-subject factors Time Bin (ten average 100 ms time bins after stimulus onset) and Condition (control, Then, we performed three types of analyses of the BGA responses. Firstly, we directly compared BGA responses between conditions in each active channel separately. Electrode Implantation and Intracranial EEG Recordings IEEG was recorded with stereotactically implanted multi- contact electrodes, often also referred to as stereo-EEG (sEEG). Recording sites were selected on an individual basis, strictly according to the medical requirements of the presurgical evaluation of epileptic zones, with no reference to the present study. Eleven to 15 semi-rigid electrodes were implanted per patient intracerebrally, depending on 1 1 3 Brain Topography (2023) 36:870–889 875 frequency decay of EEG signals (Miller et al. 2014). All the bands were then averaged together and multiplied by 100 to obtain a single time series of BGA power for each chan­ nel expressed in the percentages of the mean value, and this signal was divided into epochs of between -500 and 1500 ms relative to the stimulus onset. The mean of the prestimu­ lus interval (-50 to 0 ms) was subtracted from each epoch to remove signal changes independent of the respective stimulus. We excluded epochs in each channel containing interictal epileptiform discharges, which were identified by a spike detector implemented in MATLAB (https://github. com/EpiReC-ISARG/IED_detector, Janca et al. 2015) from further analysis. Also, from the iEEG analysis, we excluded trials (median 38, range 3-191 of all 384 trials across the 37 patients) with an incorrect or too slow (i.e. not within 3s after the stimulus) behavioral response and the blocks of trials if the mean accuracy of that block was below 75%, implying that the patient did not understand the instruction of the block and responded close to the chance level. frequency decay of EEG signals (Miller et al. 2014). All the bands were then averaged together and multiplied by 100 to obtain a single time series of BGA power for each chan­ nel expressed in the percentages of the mean value, and this signal was divided into epochs of between -500 and 1500 ms relative to the stimulus onset. The mean of the prestimu­ lus interval (-50 to 0 ms) was subtracted from each epoch to remove signal changes independent of the respective stimulus. We excluded epochs in each channel containing interictal epileptiform discharges, which were identified by a spike detector implemented in MATLAB (https://github. com/EpiReC-ISARG/IED_detector, Janca et al. 2015) from further analysis. Also, from the iEEG analysis, we excluded trials (median 38, range 3-191 of all 384 trials across the 37 patients) with an incorrect or too slow (i.e. Behavioral Results One-way ANOVA revealed that there was a significant effect of the Condition on accuracy (F(2, 72) = 42.46, p < 0.05) and reaction time (F(2, 72) = 313.01, p < 0.05) (see Fig. 3). The post hoc Tukey HSD test revealed that the patients were more successful in the control condition (here and further, results are reported in mean ± standard error of the mean form: 97.6 ± 0.5% correct) compared with both the egocentric (88.2 ± 1.6% correct, p < 0.001) and allocentric conditions (86.8 ± 1.4% correct, p < 0.001), but there was no significant difference between egocentric and allocentric conditions (p = 0.473). Reaction times significantly differed between all three conditions: patients were fastest in the control condition (688 ± 22 ms), slower in the egocentric condition (885 ± 30 ms), and slowest in the allocentric con­ dition (967 ± 23 ms) (see Fig. 3). We grouped these 164 condition-selective channels into the brain regions described below. However, some of them were widely distributed in various brain areas where we could not record from at least three different patients and use them in the statistical analysis. Individual channels in the hippocampus (1 allocentric-selective and 1 egocentric- selective), entorhinal cortex (1 allocentric-selective), tem­ poral pole (5 allocentric-selective), posterior angular gyrus (1 egocentric-selective), precuneus (1 allocentric-selective), retrosplenial cortex (1 egocentric-selective), anterior cin­ gulum (2 egocentric-selective and 1 allocentric-selective), frontal operculum (1 egocentric-selective), and medial supe­ rior frontal gyrus (3 egocentric-selective) were excluded (see supplementary Fig. S3). Therefore, the final pool for analysis included 137 ChOIs, used for all the subsequent Electrode Implantation and Intracranial EEG Recordings We used a Wilcoxon signed-rank test with FDR correction across the time samples and all active channels to compare BGA response in the post-stimulus period (0-1500 ms) for all individual time points between any two conditions (allo­ centric vs. egocentric, egocentric vs. allocentric, allocentric vs. control, egocentric vs. control). We labeled two types 1 3 Brain Topography (2023) 36:870–889 876 difference between conditions (382), and they probably responded to the general presentation of virtual scenes and objects. Of these 546 channels, only 164 were condition- selective (allocentric-, egocentric-, or spatial-selective). Out of these 164, nine were labeled as ‘epileptic’, either located in the seizure onset zone or manifesting strong interictal epileptiform activity. To compare the response magnitude and peak latency in epileptic and non-epileptic channels, we performed a two-way mixed ANOVA with the within- subject factor Condition and between-subject factor Epi­ Activity. We found no differences either in the magnitude of response (F(1, 162) = 1.37, p = 0.24), or in the peak latency (F(1, 162) = 2.32, p = 0.13). So, the epileptic activity was not related to our task. Therefore, we included these chan­ nels in further analyses. Note, however, that all epochs showing interictal spikes were excluded (see the Materials and Methods section). egocentric and allocentric), and the between-subject factor ROI with the post hoc Tukey HSD test. In the Results and Discussion sections, we name the first 100 ms bin, when the BGA response to two conditions began to differ, as the ‘time of discrimination’. Three Categories of Task-Related Responses In A and B, the left column shows the response with a significant direct difference between the allocentric and egocentric condi­ tions, while the right column shows the response with a significant difference between the respective condition and the control, but not between the control and another condition. The upper panel shows the mean ± SEM over frequency bands 50–150 Hz in the percentages of baseline activity; responses to the egocentric condition are in green, to the allocentric condition are in red, and to the control are in gray. The asterisks mark time points with the significant difference between conditions by FDR corrected Wilcoxon signed-rank at p < 0.05: green - between the egocentric and control, red - between the allocentric and control, and blue - between the allo­ centric and egocentric (both directions); the corresponding contrasts are written in the bottom left corner: ego ‘X’ ctrl, allo ‘X’ ctrl and allo ‘X’ ego, respec­ tively. The panel below shows the BGA power responses in the frequency range of 50–150 Hz to all three conditions. Legend: SMG, supramarginal gyrus; LG, lingual gyrus; mTempO, medial temporal-occipital cortex; AngG, angular gyrus; IPS, intraparietal sulcus; ITG, inferior temporal gyrus; LTC, lateral temporal cortex; MFG, middle frontal gyrus; Precentr, precentral region 1 3 59 were spatial selective (see in the egory: nd e h een i­ s the ce nd ntrol anel ency s e o and isks i nt DR ntric entric allo­ ons); tten trl, c­ BGA ange s. s; al ngular G, al ntal Fig. 4  Examples of BGA responses in the individual channels, divided by category: egocentric- (A), allocentric- (B), and spatial-selective (C). In A and B, the left column shows the response with a significant direct difference between the allocentric and egocentric condi­ tions, while the right column shows the response with a significant difference between the respective condition and the control, but not between the control and another condition. The upper panel shows the mean ± SEM over frequency bands 50–150 Hz in the percentages of baseline activity; responses to the egocentric condition are in green, to the allocentric condition are in red, and to the control are in gray. Three Categories of Task-Related Responses We found 546 active channels showing a significant response relative to the baseline to any condition. However, the majority of these channels did not show a significant Fig. 3  Behavioral results, accuracy (A), and reaction time (B), obtained from 37 patients for all three conditions (control, egocentric, and allocentric), showing significant differences between them in both measures. Each graph shows the mean and standard error of the mean; black circles represent individual data points. The red asterisk indi­ cates a significant difference between conditions (one-way ANOVA with post hoc test, p < 0.05) black circles represent individual data points. The red asterisk indi­ cates a significant difference between conditions (one-way ANOVA with post hoc test, p < 0.05) black circles represent individual data points. The red asterisk indi­ cates a significant difference between conditions (one-way ANOVA with post hoc test, p < 0.05) Fig. 3  Behavioral results, accuracy (A), and reaction time (B), obtained from 37 patients for all three conditions (control, egocentric, and allocentric), showing significant differences between them in both measures. Each graph shows the mean and standard error of the mean; black circles represent individual data points. The red asterisk indi­ cates a significant difference between conditions (one-way ANOVA with post hoc test, p < 0.05) 1 Brain Topography (2023) 36:870–889 877 analyses (Fig. 5A). Of them, 24 were egocentric-selective (4 of them with the significant contrast ego > allo, see the examples in Fig. 4A), 54 were allocentric-selective (3 of them with the significant contrast allo > ego, see the examples in Fig. 4B), while 59 were spatial-selective (see the example in Fig. 4C, and the detailed explanation about channel types in the Materials and Methods section). Over­ all, we obtained about twice as many allocentric-selective channels as egocentric-selective channels. all, we obtained about twice as many allocentric-selective channels as egocentric-selective channels. examples in Fig. 4A), 54 were allocentric-selective (3 of them with the significant contrast allo > ego, see the examples in Fig. 4B), while 59 were spatial-selective (see Fig. 4  Examples of BGA responses in the individual channels, divided by category: egocentric- (A), allocentric- (B), and spatial-selective (C). Allocentric and Egocentric Selectivity in the Brain Regions Most of the ROIs analyzed above contained channels with all three types of selectivity (allocentric-, egocentric-, and spatial-selective channels). Therefore, in the second set of analyses, we focused on mapping different characteristics of egocentric and allocentric responses across the brain regions independently of the individual channel selectivity. We compared the response magnitude and temporal char­ acteristics of responses to each condition, such as peak and onset latency, across the brain regions.if The selective channels were not evenly distributed across the brain regions (χ²(16,N=137) = 50.89, p < 0.001) (Table 1). For example, the most frequent were allocentric-selective channels in the OC (4/8: 3 in the MOG and 1 in the CUN), LTC (11/21: 5 in the ITG, 5 in the MTG, and 1 in the STG), and AIC (3/6). The IPS region contained only allocentric- selective channels (8 channels in total). Furthermore, out of all the allocentric-selective channels, 3 showed significance in the contrast allo > ego: 1 in the AnG (from the IPS), 1 in the MTG (from the LTC), and 1 in the MFG (from the Precentr). The prevailing numbers of egocentric-selective channels were found in the mTempO (9/16: 7 in the LG, 1 in the LPHT and 1 in the FuG), and the SMG (4/8). In addition, 4 of them showed significance in the contrast ego > allo: 3 in the LG (from the mTempO), and 1 in the SMG. The spatial-selective channels, i.e., responding to both egocentric and allocentric tasks compared to the con­ trol, were most frequent in the frontal cortex: Precentr (21/43), Afront (9/17), and IFG (6/10), but their notable numbers were also found in the mTempO (7/16), and LTC (10/21). y, g To find differences in the BGA responses between each condition and brain region, we first examined the response magnitudes (the maximum increase of BGA in the percent­ age of baseline activity) (see Fig. 6A). To this end, we used two-way mixed ANOVA with the within-subject factor Con­ dition and between-subject factor ROI with the post hoc Tukey HSD test. This analysis showed a significant effect of both main factors (factor Condition: F(2, 256) = 33.9, p < 0.01; factor ROI: F(8, 256) = 3.2, p < 0.01) and their interaction (F(16, 256) = 5.4, p < 0.01). After applying the post hoc test, we found differences between allocentric and egocentric responses only in two ROIs: IPS and mTempO. Three Categories of Task-Related Responses The asterisks mark time points with the significant difference between conditions by FDR corrected Wilcoxon signed-rank at p < 0.05: green - between the egocentric and control, red - between the allocentric and control, and blue - between the allo­ centric and egocentric (both directions); the corresponding contrasts are written in the bottom left corner: ego ‘X’ ctrl, allo ‘X’ ctrl and allo ‘X’ ego, respec­ tively. The panel below shows the BGA power responses in the frequency range of 50–150 Hz to all three conditions. Legend: SMG, supramarginal gyrus; LG, lingual gyrus; mTempO, medial temporal-occipital cortex; AngG, angular gyrus; IPS, intraparietal sulcus; ITG, inferior temporal gyrus; LTC, lateral temporal cortex; MFG, middle frontal gyrus; Precentr, precentral region 1 1 3 Brain Topography (2023) 36:870–889 878 We mapped these 137 ChOIs into the following nine brain regions (ROIs) (see also Table 1; Fig. 5): OC – occipi­ tal cortex but without the primary visual cortex – cuneus, middle occipital gyrus, temporo-occipital transition zone; mTempO – medial temporal-occipital cortex – mainly the posterior parts of lingual and fusiform gyri and the lingual- parahippocampal transition area; LTC – lateral temporal cortex – the inferior, middle, and superior temporal gyri; IPS – the area near the posterior part of the intraparietal sul­ cus – the superior parietal lobule and angular gyrus; SMG - supramarginal gyrus; Precentr – precentral region – the posterior part of the frontal cortex, combining the precen­ tral gyrus and the posterior parts of the middle frontal and superior frontal gyri (with MNI ‘y’ < 20); Afront - anterior frontal cortex, combining the anterior parts of the middle frontal and superior frontal gyri (with MNI ‘y’ > 20); IFG - inferior frontal gyrus: the opercular and triangular parts; AIC - anterior insular cortex. strategies that patients may use (see supplementary Fig. S1 and Supplementary Results). Summarizing both behav­ ioral (see supplementary Table S1) and iEEG results (see supplementary Table S2) of this analysis across the dif­ ferent images used in the test, we are able to consider the egocentric-selective activation in the mTempO and SMG to be associated with true egocentric spatial coding and the allocentric-selective activation in the OC, LTC, and IPS to be associated with true allocentric spatial coding. 1 3 Allocentric and Egocentric Selectivity in the Brain Regions In the IPS, the average response peak was higher for the allocentric task, while in the mTempO, it was higher for the egocentric task (see also their time-frequency responses in 50–150 Hz in supplementary Fig. S4). In the frontal cor­ tex (Precentr, Afront), the response peak was higher for both allocentric and egocentric conditions compared to the control. It may be questioned in simple images like the ones used in our test whether the subject used ‘true’ egocentric and allocentric strategies for estimating distances within the pre­ sented scene. Instead of forming a three-dimensional mental image containing objects in the scene and using it for the spatial decision, one could use non-spatial strategies, like ‘the larger object is closer to me’ or others (see a description of other strategies in the Materials and Methods section). To check whether the allocentric-selective channels in the IPS, OC, and LTC regions represent true allocentric cod­ ing and the egocentric-selective channels in the mTempO and SMG regions represent true egocentric coding, we per­ formed an additional analysis of all the potential non-spatial Subsequently, we compared the peak latency across ROIs and conditions (see Fig. 6B). The interaction of two fac­ tors (Condition x ROI) was significant (F(16, 256) = 1.84, p < 0.05), but the post hoc test did not reveal a significant difference between egocentric and allocentric conditions in any ROI. However, in the frontal cortex, the response peak was delayed (Precentr, Afront, IFG) for an allocentric con­ dition compared to the control, and there was no difference in response peak time between the egocentric and control conditions. Furthermore, the Afront region (all conditions) differed from almost all other regions (vs. Allocentric and Egocentric Selectivity in the Brain Regions OC, mTempO, 1 3 Brain Topography (2023) 36:870–889 879 Table 1  Characteristics of brain regions containing the 137 channels of interest Brain region P N Spatial- selective Allocentric-selective Egocentric-selective Brain structures MNI coordinates, range Abs (X) Y Z OC 5 8 3(2) 4(4) 1(1) MOG: 5, TOTZ: 2, CUN: 1 [19, 42] [-81, -71] [10, 33] mTempO 8 16 7(5) 0 9(4): 3 LG: 8, FuG: 6, LPHT: 2 [15, 40] [-72, -18] [-25, 12] LTC 6 21 10(2) 11(5): 1 0 MTG: 13, ITG: 7, STG: 1 [38, 55] [-63, -2] [-35, 15] IPS 4 8 0(0) 8(4): 1 0 AngG: 4, SPL: 4 [9, 37] [-62, -47] [43, 54] SMG 4 8 1(1) 3(2) 4(3): 1 SMG: 8 [37, 63] [-33, -20] [25, 45] Precentr 14 43 21(11) 17(10): 1 5(4) PreG: 21, MFG: 14, SFG: 8 [18, 59] [-15, 15] [21, 60] Afront 6 17 9(4) 7(4) 1(1) MFG: 12, SFG: 5 [23, 41] [20, 54] [14, 44] IFG 6 10 6(3) 1(1) 3(3) IFG: 10 [31, 51] [13, 37] [2, 23] AIC 4 6 2(1) 3(3) 1(1) INS: 6 [33, 38] [2, 24] [-2, 22] Brain region, ROI; P, number of patients; N, number of channels in each brain region in total; the spatial-selective, allocentric-selective, and egocentric-selective columns show the number of corresponding channels with the number of patients in parentheses; additional numbers in the allocentric-selective and egocentric-selective columns after the colon show the number of channels with a significant difference in the contrast allo vs. ego; the brain structures column lists anatomical labels for all channels in the brain region, with the number of channels. The last three columns show the range ([min, max]) of X, Y, and Z MNI coordinates of each brain region. Abbreviations used: OC, occipital cortex; MOG, middle occipital gyrus; TOTZ, temporo- occipital transition zone; CUN, cuneus; mTempO, medial temporal-occipital cortex; LG, lingual gyrus; FuG, fusiform gyrus; LPHT, lingual-parahippocampal transition area; LTC, lateral temporal cortex; MTG, middle temporal gyrus; ITG, inferior temporal gyrus; STG, superior temporal gyrus; IPS, intraparietal sulcus; AngG, angular gyrus; SPL, superior parietal lobule; SMG, supramarginal gyrus; Precentr, precentral region; PreG, precentral gyrus; MFG, middle frontal gyrus; SFG, superior frontal gyrus; Afront, anterior frontal cortex; IFG, inferior frontal gyrus; AIC, anterior insular cortex; and INS, insula 1 1 3 1 3 Brain Topography (2023) 36:870–889 880 Brain Topography (2023) 36:870–889 g. Allocentric and Egocentric Selectivity in the Brain Regions 5  The positions of 137 channels of interest plotted in the stan­ ard MNI brain template, marked by channel category (A) or by ROI B). The top, middle, and bottom panels show sagittal, coronal, and xial views, respectively. The size of each point corresponds to the aximum magnitude of each channel’s response, with the scale at the ottom left in percent signal change. The adult MNI-ICBM152 head model was used as a background (Dempsey et al. 2015; http://www. ucl.ac.uk/dot-hub). Legend: OC, occipital cortex; mTempO, medial temporal-occipital cortex; LTC, lateral temporal cortex; IPS, intrapa­ rietal sulcus; SMG, supramarginal gyrus; Precentr, precentral region; Afront, anterior frontal cortex; IFG, inferior frontal gyrus; and AIC, anterior insular cortex 80 Fig. 5  The positions of 137 channels of interest plotted in the stan­ dard MNI brain template, marked by channel category (A) or by ROI (B). The top, middle, and bottom panels show sagittal, coronal, and axial views, respectively. The size of each point corresponds to the maximum magnitude of each channel’s response, with the scale at the bottom left in percent signal change. The adult MNI-ICBM152 head model was used as a background (Dempsey et al. 2015; http://www. ucl.ac.uk/dot-hub). Legend: OC, occipital cortex; mTempO, medial temporal-occipital cortex; LTC, lateral temporal cortex; IPS, intrapa­ rietal sulcus; SMG, supramarginal gyrus; Precentr, precentral region; Afront, anterior frontal cortex; IFG, inferior frontal gyrus; and AIC, anterior insular cortex Fig. 5  The positions of 137 channels of interest plotted in the stan­ dard MNI brain template, marked by channel category (A) or by ROI (B) Th t iddl d b tt l h itt l l d model was used as a background (Dempsey et al. 2015; http://www. ucl.ac.uk/dot-hub). Legend: OC, occipital cortex; mTempO, medial temporal-occipital cortex; LTC, lateral temporal cortex; IPS, intrapa­ rietal sulcus; SMG, supramarginal gyrus; Precentr, precentral region; Afront, anterior frontal cortex; IFG, inferior frontal gyrus; and AIC, anterior insular cortex Fig. 5  The positions of 137 channels of interest plotted in the stan­ dard MNI brain template, marked by channel category (A) or by ROI (B). The top, middle, and bottom panels show sagittal, coronal, and axial views, respectively. The size of each point corresponds to the maximum magnitude of each channel’s response, with the scale at the bottom left in percent signal change. Allocentric and Egocentric Selectivity in the Brain Regions The adult MNI-ICBM152 head 1 3 1 881 Brain Topography (2023) 36:870–889 p g p y ( ) response was later in the AIC than in several other brain regions, such as the mTempO and LTC. LTC, Precentr): on average, the response peak was later in this brain area. In addition, the peak of the allocentric Fig. 6  Measures of the magnitude (A), peak latency (B), and onset latency (C) of the BGA responses to individual test conditions (allocentric, egocentric, control) of all 137 channels of interest (egocentric-, allocentric-, and spatial-selective together) sorted by ROI. Plots A and B show the results of a post hoc test on two-way interaction, p < 0.05 (Condition x ROI). Plot C shows the post hoc test results on the main factor ROI, p < 0.05 (all conditions are shown together). The blue asterisk (*) reflects the difference between allocentric and egocentric conditions, the red rhombus (◊) between allocen­ tric and control conditions, and the green square (■) between egocentric and control, within the same ROI. The violet asterisk (*) reflects the difference between ROIs for all conditions, while the violet symbol † shows the differ­ ence between ROIs only for the allocentric condition 1 3 sures of the magnitude atency (B), and onset of the BGA responses al test conditions c, egocentric, control) hannels of interest -, allocentric-, and ctive together) sorted ots A and B show of a post hoc test on nteraction, p < 0.05 x ROI). Plot C shows c test results on the r ROI, p < 0.05 (all are shown together). sterisk (*) reflects the between allocentric ntric conditions, the red ◊) between allocen­ ntrol conditions, and quare (■) between and control, within the The violet asterisk (*) difference between l conditions, while the bol † shows the differ­ en ROIs only for the condition Fig. 6  Measures of the magnitude (A), peak latency (B), and onset latency (C) of the BGA responses to individual test conditions (allocentric, egocentric, control) of all 137 channels of interest (egocentric-, allocentric-, and spatial-selective together) sorted by ROI. Plots A and B show the results of a post hoc test on two-way interaction, p < 0.05 (Condition x ROI). Plot C shows the post hoc test results on the main factor ROI, p < 0.05 (all conditions are shown together). Allocentric and Egocentric Selectivity in the Brain Regions The blue asterisk (*) reflects the difference between allocentric and egocentric conditions, the red rhombus (◊) between allocen­ tric and control conditions, and the green square (■) between egocentric and control, within the same ROI. The violet asterisk (*) reflects the difference between ROIs for all conditions, while the violet symbol † shows the differ­ ence between ROIs only for the allocentric condition response was later in the AIC than in several other brain regions, such as the mTempO and LTC. LTC, Precentr): on average, the response peak was later in this brain area. In addition, the peak of the allocentric LTC, Precentr): on average, the response peak was later in this brain area. In addition, the peak of the allocentric response was later in the AIC than in several other brain regions, such as the mTempO and LTC. response was later in the AIC than in several other brain regions, such as the mTempO and LTC. 1 3 3 3 882 Brain Topography (2023) 36:870–889 during the whole post-stimulus period. To this end, we per­ formed three-way mixed ANOVA with within-subjects fac­ tors Time Bin (ten average 100 ms time bins after stimulus onset) and Condition (control, egocentric and allocentric), and the between-subject factor ROI with the post hoc Tukey HSD test. We used such an approach to dissociate the time course of averaged BGA across all conditions in all nine ROIs (see Fig. 7). The interaction of three factors (Condi­ tion x Time Bin x ROI) was significant F(144, 2304) = 2.54, p < 0.001. The post hoc test revealed four brain regions in which the allocentric response was higher than the egocen­ tric one at least at one 100 ms time bin: OC, IPS, LTC, and Precentr. In the IPS, the allocentric BGA response dissoci­ ated from the egocentric one earlier than in other regions, at the time window of 400–700 ms. Then in the Precentr, the response to the allocentric condition was higher than the egocentric one at 500–600 ms, although in this region, both the allocentric and egocentric responses began to differ from To further specify the time course of spatial coding, we also compared onset latency (the first time bin at which a significant p-value was observed relative to the baseline, tsig). Allocentric and Egocentric Selectivity in the Brain Regions A two-way mixed ANOVA showed that the interac­ tion of two factors (Condition x ROI) was not significant for tsig (F(16, 234) = 0.86, p = 0.61), but the main factor ROI was significant (F(8, 117) = 7.42, p < 0.01). The post hoc test revealed that, regardless of the condition, the BGA response emerged significantly later in the Afront region and the AIC than in the OC, mTempO, LTC, and Precentr (see Fig. 6C). Temporal Dynamics of Egocentric and Allocentric Coding Next, we aimed to analyze in more detail the complete time- course of the response to the three conditions, to determine how the time course of their responses differs and develops Fig. 7  The time course of the group averaged BGA response (mean ± SEM) to individual test conditions (allocentric, egocentric, control) for all 137 channels of interest (egocentric-, allocentric-, and spatial-selective together) as a function of ROI and stimulus type. Significance markers (*) reflect the difference between the response to three conditions in each 100-ms time interval: red - between allo­ centric and control, green - between egocentric and control, blue - between allocentric and egocentric conditions (both directions), three- way ANOVA with post hoc test, p < 0.05. The x-axis labels show the upper boundary of each time interval Fig. 7  The time course of the group averaged BGA response (mean ± SEM) to individual test conditions (allocentric, egocentric, control) for all 137 channels of interest (egocentric-, allocentric-, and spatial-selective together) as a function of ROI and stimulus type. Significance markers (*) reflect the difference between the response to three conditions in each 100-ms time interval: red - between allo­ centric and control, green - between egocentric and control, blue - between allocentric and egocentric conditions (both directions), three- way ANOVA with post hoc test, p < 0.05. The x-axis labels show the upper boundary of each time interval 1 3 Brain Topography (2023) 36:870–889 883 the control task at 300 ms after stimulus onset. Later, the allocentric response began to differ from the egocentric one in the OC and LTC at the time window of 600–700 ms. desk. The participants made egocentric judgments (such as ‘Which object was closest to you?’) much faster than allocentric ones (such as ‘Which object was closest to the Cube?’). The authors also interpreted such a result that ego­ centric coding is primary and occurs almost automatically, while in the allocentric RF, spatial information is encoded effortfully, and additional attentional resources are required. Furthermore, post hoc test results revealed one brain region in which the egocentric response differed from the allocentric one, namely in the mTempO at 300–1000 ms after stimulus onset. None of the other regions showed any difference between allocentric and egocentric responses, probably due to the low number of selective channels there, but they differed in the time of discrimination from the con­ trol task. Discussion Our study provides insight into the temporal dynamics of brain areas associated with allocentric and egocentric spa­ tial RFs using iEEG. The presented analyses document sev­ eral important findings. i g First, our results support the view of primary egocentric and secondary allocentric representations and that allocen­ tric representations are derived by translation of the egocen­ tric ones during visual scene encoding (Byrne et al. 2007; Filimon 2015). In our task, both types of representations need to be constructed in each trial, as the scene configura­ tion is variable. In agreement with this view and repeated egocentric to allocentric translations, our data documented later response peaks for allocentric responses compared to the control in all frontal regions (Precentr, Afront, IFG) and, in contrast, no later response peaks for egocentric responses in these regions. It is worth noting, however, that the dif­ ference between egocentric and allocentric response peaks did not reach statistical significance, probably due to the small number of channels and related low statistical power. Moreover, we found that the selectivity to the egocentric condition in the egocentric-selective region mTempO began earlier than the selectivity to allocentric condition in allo­ centric-selective brain regions such as IPS, OC and LTC. Behavioral data in our study also showed that patients per­ formed the egocentric task faster than the allocentric one. Several behavioral studies demonstrated a similar tendency (Ruggiero et al. 2009, 2016). In a task similar to ours but using real 3D objects, Ruggiero et al. (2009, 2016) asked subjects to make egocentric and allocentric spatial judg­ ments of the distance between objects presented on a Temporal Dynamics of Egocentric and Allocentric Coding In two fronto-parietal regions, the SMG and IFG, the egocentric response began to differ from the control ear­ lier (in both regions at 400 ms) than the allocentric response from the control (at 500 and 600 ms, respectively). In the AIC, both allocentric and egocentric responses began to dif­ fer from the control at 500 ms, but the duration of this differ­ ence was not the same: for the egocentric response, it ended at 800 ms, while for the allocentric one at 1000 ms. f y q Second, our results broaden the dominant view of the dorsal and ventral streams supporting the egocentric and allocentric space coding, respectively (Goodale et al. 2004; Committeri et al. 2004; Zaehle et al. 2007). Despite the large overlap in allocentric and egocentric selectivity, we identified several brain areas preferably responsive to the allocentric or egocentric conditions. A high number of allocentric-selective channels was found in the IPS in the parietal cortex, and the maximum number of egocen­ tric-selective channels was found in the mTempO region consisting mainly of lingual and fusiform gyri. Our data complement several other studies, suggesting the role of the medial temporal cortex in egocentric and parietal cor­ tex in allocentric coding, as discussed below. In addition, besides the large overlap, we found a higher number of allocentric-selective regions than egocentric-selective ones, and also more allocentric-selective than egocentric-selec­ tive channels. These proportions agree with the view that allocentric coding is supported by most of the egocentric- related regions but with additional brain areas involved. A similar tendency was also observed in several fMRI studies (Committeri et al. 2004; Zaehle et al. 2007) and a recent meta-analysis (Li et al. 2021) showing less activation in the egocentric compared to the allocentric task. Temporal Processing of Allocentric and Egocentric Spatial Information In agreement with our hypothesis, we observed differences in the temporal processing scheme for allocentric and ego­ centric RFs, specifically in the brain regions with a major proportion of channels responding to both RFs. By showing an earlier temporal profile of the egocentric response com­ pared to the allocentric one, these findings favor the hypoth­ esis that egocentric spatial coding is the primary process, and allocentric representations are derived from egocen­ tric transformations (Filimon 2015; Ruggiero et al. 2009). Our data document these different temporal profiles in both response peak latency and 100 ms time bins analysis. In the frontal regions (Precentr, IFG, Afront), the allocentric condition showed a later response peak than the control. By contrast, the egocentric condition did not differ in the response peak time from the control. In addition, the ego­ centric response in the IFG and SMG regions began to dif­ fer significantly from the control earlier than the allocentric 1 1 3 Brain Topography (2023) 36:870–889 884 egocentric BGA response here was higher than the allocen­ tric one at 300–1000 ms after stimulus onset. This finding is unique, as none of the previous electrophysiological studies focusing on egocentric coding reported any specific timing of this information processing (Bastin et al. 2013; Kunz et al. 2021). Bastin and his colleagues (2013) described a common phase for allocentric and egocentric processing at 400–600 ms after stimulus onset in the PPA, located more anteriorly than the mTempO. Notably, in our study, the selectivity to the egocentric response in the mTempO began earlier (at 300 ms) than the selectivity to allocentric response in allocentric-selective brain regions (IPS at 400 ms, OC and LTC at 600 ms). Although in the ventral stream (see Byrne et al. 2007), this difference seems to favor the hypothesis that egocentric spatial coding is a more primary process relative to allocentric coding (Filimon 2015). responses (at 400 and 600 ms after stimulus onset, respec­ tively). The difference in peak latency may potentially be affected by the difference in the reaction time of behavioral responses, as the participants were faster in control than in the allocentric condition. However, we discarded from our analysis all late responses with the BGA peak after 800 ms and those apparently aligned to the key press time on the plot of all individual epochs. Temporal Processing of Allocentric and Egocentric Spatial Information Therefore, we suppose that these EEG responses were not related to the movement but rather to the stimulus and spatial RF processing.i Importantly, our findings suggest an interaction between the three allocentric-selective brain regions, with at least three processing stages. In the first stage, the OC region responds similarly to all three conditions at about 300 ms after the stimulus onset. The location of the task-responsive channels in the OC region corresponds to the MNI coor­ dinates of the scene-selective occipital place area (OPA) (Dilks et al. 2013; Nakamura et al. 2000). Furthermore, its response time is similar to the time of discrimination of scenes from objects observed in our previous iEEG study (242 ms, Vlcek et al. 2020) in the OPA and to the latency of scene presentation in a magnetoencephalography study (MEG) in a region close to the OPA (300 ms, Sato et al. 1999). Thus, the first processing stage might be involved in encoding general spatial layout information in our task. The second processing stage was observed in the IPS at 400–700 ms after stimulus onset, where the difference between allo­ centric and egocentric responses first emerged, with larger allocentric ones. In contrast, selectivity to the allocentric condition in the OC region appeared rather late, at 600–700 ms after stimulus onset; similar latency of the allocentric- selective response was also found in the LTC, the third region with a higher proportion of allocentric-selective channels. The IPS is a part of the dorsal attentional network (DAN) and has been linked to attentional selection (Ptak 2012). The IPS might send top-down attentional modula­ tions to the OPA and LTC, triggering a BGA increase at the third processing stage, although additional studies involv­ ing functional connectivity methods are required to test this hypothesis. For OPA, this top-down effect may be repre­ sented in guiding participants’ attention to the position of the yellow mark located on the border between the floor and walls. The OPA seems to represent environmental bound­ aries regardless of their configuration (Kamps et al. 2016; Julian et al. 2016). In our task, the participants could use the distance from the arena wall to make allocentric judgments, a strategy accompanied by BGA responses in the OPA. Temporal Processing of Allocentric and Egocentric Spatial Information In the dorsolateral prefrontal cortex (the Afront region), the onset latency of the BGA response and its peak for all conditions was delayed (by about 150 ms) compared to almost all other regions. At later stages of information pro­ cessing, the dorsolateral prefrontal cortex may coordinate and integrate the functioning of other brain regions involved in spatial processing (Tanji and Hoshi 2008). 1 3 Cortical Regions Selective for Egocentric and Allocentric Spatial Coding Our results broaden the dominant view of egocentric and allocentric coding being associated with the dorsal and ventral visual streams, respectively (Goodale et al. 2004). Regarding the egocentric selectivity, besides several ego­ centric-selective channels in the SMG, we found their maxi­ mal proportion in the ventral stream, in the mTempO region consisting mainly of lingual and posterior fusiform gyri. It seems unexpected to observe activity associated with the egocentric RF in the ventral occipito-temporal cortex (ven­ tral visual stream) as the opposite results for the allocentric task were found in several fMRI studies (Committeri et al. 2004; Galati et al. 2000), although more anteriorly (includ­ ing PPA). However, our finding of egocentric-selective channels in this region is supported by several facts. Firstly, we cannot consider activity observed in mTempO arte­ factual as responses in these channels were obtained from four patients. Secondly, three channels in this region, in the posterior lingual gyrus, were more selective than most ego­ centric-selective channels showing a significantly higher response magnitude for the egocentric condition than for the allocentric one. There were only four channels with these characteristics in total. Thirdly, two of the four patients having egocentric-selective channels in the mTempO most likely used a true egocentric strategy rather than other strat­ egies, e.g., based on apparent object-size features. In the Furthermore, our data indicate early egocentric process­ ing in the ventral visual stream. The mTempO was the region with the maximal proportion of egocentric-selective chan­ nels and the only one with a phase of egocentric response selectivity, as discussed in the next section. The average 1 3 Brain Topography (2023) 36:870–889 885 supplementary analysis, we found no differences in their behavioral response accuracy between any image type in the egocentric condition. Similarly, in at least two egocen­ tric-selective channels in the mTempO region obtained from two patients, we did not find differences in the magnitude of BGA across all image types. All these data seem to confirm the involvement of the mTempO region in egocentric spatial coding in our task. one channel showing a significant difference in the contrast allo > ego. Furthermore, the response magnitude was higher for an allocentric than for an egocentric condition only in the IPS. Surprisingly, we did not find any egocentric-selec­ tive channels in the IPS, contrasting with the results of other studies (Ruotolo et al. 2019; Chechlacz et al. 2010). Cortical Regions Selective for Egocentric and Allocentric Spatial Coding ( ; ) Our finding of allocentric-selective channels in IPS is supported by several facts. Firstly, we are able to exclude the possibility of observing these allocentric-selective channels as an individual specific-finding, as we obtained eight such channels from four different patients. Secondly, our supplementary analysis suggests that patients with allocentric-selective channels in the IPS used a true allo­ centric strategy rather than other strategies. We found that two patients with channels in the IPS showed no difference in behavioral response accuracy between image types sup­ porting different non-spatial strategies. In addition, in the IPS allocentric-selective channels, the iEEG data showed greater activation for the allocentric than for the egocentric condition in almost all image types, except when the three- dimensional and two-dimensional distance did not corre­ spond to each other (Allo 3D ≠ 2D, i.e., the ball that was closer to the yellow mark in the three-dimensional space was more distant from it in the two-dimensional coordinates of the screen). This exception may suggest IPS involvement only when the subjects use a two-dimensional strategy. It contrasts, however, with fMRI studies showing a critical role in the integration of multiple depth cues and, therefore, in a representation of the 3D surface geometry of objects of posterior portions of the IPS (Grefkes and Fink 2005; Tsut­ sui et al. 2005). The lack of any difference in Allo 3D ≠ 2D trial types may probably be explained by low statistical power, as the subset of Allo 3D ≠ 2D images included a very small number of epochs. The involvement of the medial temporal-occipital cortex in egocentric representations was shown in several lesion studies (Nyffeler et al. 2005; Weniger and Irle 2006). In a single case study in a patient with the destruction of the parahippocampal, fusiform, lingual, and medial occipito- temporal gyri, and using a paradigm of memory-guided saccades, apart from an obvious allocentric deficit, Nyffeler et al. (2005) detected an additional impairment of the ego­ centric coordinate frame. The role of the parahippocampal cortex was also documented in studies using a virtual maze without any landmarks where participants presumably used an egocentric navigation strategy. During navigation in this maze, the parahippocampal and lingual gyri were active (Weniger et al. 2010), and patients with lesions to the right posterior parahippocampal gyrus had difficulties finding the goal (Weniger and Irle 2006). Cortical Regions Selective for Egocentric and Allocentric Spatial Coding This parahippocampal activa­ tion may be potentially associated primarily with analyz­ ing the appearance of important navigation decision points (Janzen and van Turennout 2004). In addition, a recent paper using single-cell recordings in epileptic patients identified egocentric bearing cells in the medial temporal lobe with their highest proportion in the parahippocampal cortex (Kunz et al. 2021). These neurons were discovered during a virtual navigation spatial memory task and are con­ sidered to encode egocentric directions and distances from the observer toward reference points in space and, there­ fore, may represent the basis for egocentric representations. Finally, in a scalp EEG study using sparse augmented real­ ity mazes where healthy participants navigated while being blindfolded, the lingual gyrus theta EEG power decreased across trials during spatial learning (Miyakoshi et al. 2021). According to the authors, this theta power reduction may represent a shift from the initial use of egocentric represen­ tations of the maze built on local proprioceptive and sensory feedback signals to the use of allocentric map-like represen­ tations. Notably, MNI coordinates of the cluster showing a decrease in theta band overlapped with egocentric-selective channels in the posterior lingual gyrus in our iEEG study. Moreover, several other studies indicate that processes related to object-centered RFs may occur in the parietal cor­ tex. In an fMRI experiment with the verbal description of spatial relations between objects, Zaehle and his colleagues (2007) found that parts of the inferior and superior pari­ etal lobules expressed greater activation for the allocentric compared to the egocentric task. Significant responses in the right IPS unique to allocentric spatial coding (for the contrast allo > control, but not for ego > control, similar to our results) were also documented in a more recent func­ tional near-infrared spectroscopy study (fNIRS) during a two-dimensional spatial discrimination task (Derbie et al. 2021b). According to the hypothesis that allocentric object- centered RFs are derived via mental transformations of pri­ mary egocentric RFs (Filimon 2015), IPS activation may be associated with additional attentional resources required to mentally shift egocentric spatial locations of each object into new, mentally transformed, object-relative positions. In Regarding the allocentric selectivity, besides allocentric- selective channels observed in the ventral stream areas such as OC and LTC, we found their maximal proportion in the IPS in the parietal cortex. Cortical Regions Selective for Egocentric and Allocentric Spatial Coding This region, on a bound­ ary between the angular gyrus and superior parietal lobule, contained only allocentric-selective channels, including 1 3 Brain Topography (2023) 36:870–889 886 activations from at least three different patients. Therefore, we are convinced that our data reflect primarily physiologi­ cal mechanisms. an fMRI study explicitly focused on attentional orienting, the IPS showed the most pronounced increase of activity associated with object-centered relative to the viewer-cen­ tered RF (Wilson et al. 2005). The low proportion of selective channels from all that were implanted is noteworthy. Of the 4586 implanted chan­ nels, 546 were responsive in our task (11.9%). This pro­ portion is similar to other iEEG studies (Vidal et al. 2010; Vlcek et al. 2020), where around 17% of channels were responsive. The slightly lower proportion in our current study is probably connected to the specificity of our stimuli, which were all very similar spatial scenes. Of these respon­ sive channels, only 164 were condition-selective (4% of all implanted), which we expected given the identical visual stimuli and conditions differing only in the type of question presented before. ( ) In our iEEG study, we did not find any allocentric-selec­ tive channels in the PPA and medial occipitotemporal cortex more generally, although an fMRI (Committeri et al. 2004) and another follow-up iEEG study (Bastin et al. 2013) showed posterior parahippocampal involvement during the allocentric task. Possibly, medial occipitotemporal cor­ tex, including PPA, is only involved in the world-centered allocentric RF use and may reflect the coding of the cur­ rent spatial relationships between the viewer and the whole environmental geometry (see reviews Galati et al. 2010 and Moraresku and Vlcek 2020). In contrast, the LTC seems to be associated with object-centered RF, as our experimental design included the object-centered allocentric condition in which the subjects did not need to focus on the whole environmental geometry but rather on the local spatial rela­ tionships between objects. Our finding of BGA responses to the allocentric condition in the LTC is consistent with the results of several fMRI studies (Committeri et al. 2004; Saj et al. 2014; Zaehle et al. 2007). For instance, Commit­ teri et al. (2004) observed greater activation in the bilateral lateral occipitotemporal cortex, including inferior temporal and occipital gyri, in the contrast object-centered relative to viewer-centered condition, i.e., when participants judged which of two objects was closer to the target object ignoring the surrounding environment. Cortical Regions Selective for Egocentric and Allocentric Spatial Coding To some extent, our results can be influenced by our experimental design. In the test images, we used a first- person view, which is more natural for humans and usually used during real navigation. However, in a bird-eye view, allocentric estimation of distance could be potentially easier than in a first-person view because of more visible distances that might be reflected in iEEG results. Also, our results can be potentially affected by the sub­ jects’ position during the experiment. While in fMRI stud­ ies, participants lie in a scanner, the iEEG study enables patients to perform the experimental task in an upright posi­ tion, i.e., while sitting in bed. This difference may poten­ tially affect neural activities, as sitting in an upright position may facilitate the translation of body coordinates for spatial coding. One MEG study has already revealed differences in neural activity between lying supine and sitting upright (Lifshitz et al. 2017). Source-localization analysis showed that sitting upright versus lying supine was associated with higher beta and gamma activity in the broad parietooccipi­ tal region and lower activity in prefrontal regions across a range of bandwidths. To sum up, our data, together with other recent studies, suggest that the medial temporal-occipital cortex could also be involved in egocentric coding of space and the parietal cortex – in allocentric coding. Study Limitations General complication with human iEEG is the limited cov­ erage of the brain. Although we recorded data from 4586 bipolar channels in 37 patients, some brain areas were still covered sparsely, such as the posterior parts of the occipital and the parietal cortex. Furthermore, the right hemisphere was covered quite densely (72% of all recording sites) as opposed to the left hemisphere. Because of the unequal distribution of selective channels in both hemispheres, we grouped and analyzed them together that limited us in find­ ing any laterality in BGA responses.l 1 3 References Abdi H, Williams LJ, United States (2010) Tukey’s honestly signifi­ cant difference (HSD) test. N. Salkind (Ed.), Encyclopedia of research design: Qualitative research, SAGE Publications, Inc, (2010), pp. 1159–1164, https://doi.org/10.4135/9781412961288 Bastin J, Committeri G, Kahane P, Galati G, Minotti L, Lachaux JP, Berthoz A (2013) Timing of posterior parahippocampal gyrus activity reveals multiple scene processing stages. Hum Brain Mapp 34(6):1357–1370. https://doi.org/10.1002/hbm.21515 Byrne P, Becker S, Burgess N (2007) Remembering the past and imagining the future: a neural model of spatial mem­ ory and imagery. Psychol Rev 114(2):340–375. https://doi. org/10.1037/0033-295X.114.2.340 Supplementary Information  The online version contains supplementary material available at https://doi.org/10.1007/s10548- 023-00989-2. Chechlacz M, Rotshtein P, Bickerton WL, Hansen PC, Deb S, Hum­ phreys GW (2010) Separating neural correlates of allocentric and egocentric neglect: distinct cortical sites and common white mat­ ter disconnections. Cogn Neuropsychol 27(3):277–303. https:// doi.org/10.1080/02643294.2010.519699 Acknowledgements  We would like to thank all the patients who par­ ticipated in this study and Nad’a Bednárová, Helena Buchtová, Lucie Paterová, Iveta Fajnerová, Tereza Nekovářová, and Jana Kalinová for their help with collecting the iEEG data. Chechlacz M, Rotshtein P, Humphreys GW (2012) Neuroanatomical dissections of unilateral visual neglect symptoms: ALE Meta- analysis of lesion-symptom mapping. Front Hum Neurosci 6:230. https://doi.org/10.3389/fnhum.2012.00230 Author Contributions  S.M.: Software, Formal analysis, Investigation, Data Curation, Writing - Original Draft, Writing - Review & Editing, Visualization. J.H.: Conceptualization, Software, Validation, Writing - Review & Editing. R.J.: Software, Formal analysis. P.J.: Software, Formal analysis. A.K.: Data Curation, Resources. P.M.: Conceptualiza­ tion, Validation, Resources, Writing - Review & Editing, Supervision, Project administration, Funding acquisition. K.V.: Conceptualization, Methodology, Software, Validation, Formal analysis, Investigation, Resources, Data Curation, Writing - Review & Editing, Supervision, Project administration, Funding acquisition. Committeri G, Galati G, Paradis AL, Pizzamiglio L, Berthoz A, LeBihan D (2004) Reference frames for spatial cognition: dif­ ferent brain areas are involved in viewer-, object-, and landmark- centered judgments about object location. J Cogn Neurosci 16(9):1517–1535. https://doi.org/10.1162/0898929042568550 Corbetta M, Shulman GL (2002) Control of goal-directed and stimu­ lus-driven attention in the brain. Nat Rev Neurosci 3(3):201–215. https://doi.org/10.1038/nrn755 Dempsey LA, Cooper RJ, Roque T, Correia T, Magee E, Powell S, Hebden JC (2015) Data-driven approach to optimum wavelength selection for diffuse optical imaging. J Biomed Opt 20(1):016003. https://doi.org/10.1117/1.JBO.20.1.016003 Funding  This study was funded by the Grant Agency of Czech Repub­ lic (GACR) grant 19-11753S and the Grant Agency of Charles Uni­ versity (GAUK) grant 248122. Institutional support for IPHYS was provided by RVO: 67985823. Conclusion In our study, we documented the temporal and regional interactions between egocentric and allocentric spatial cod­ ing in the human brain. The egocentric selectivity in our egocentric-selective region, the medial temporal-occipital cortex, began earlier than the allocentric selectivity in our allocentric-selective brain regions, the intraparietal sulcus, occipital and lateral temporal cortex. In the frontal regions, allocentric responses also peaked later. Furthermore, we found a large overlap between egocentric and allocentric coding in the spatial domain, both at the level of individual bipolar channels and brain regions, as well as in the tem­ poral domain. Still, we identified several egocentric- and The iEEG data may reflect the abnormal brain activity of epileptic patients. However, we excluded all trials show­ ing interictal epileptiform discharges, and channels labeled ‘epileptic’ differed from non-epileptic channels neither in the magnitude of response nor in the peak latency. More­ over, for each brain region analyzed, we required iEEG 1 3 Brain Topography (2023) 36:870–889 887 included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons. org/licenses/by/4.0/. allocentric-selective brain areas, which, however, were not confined to the dorsal and ventral visual streams, respec­ tively. Overall, our findings indicated that there were more regions and channels that were selective to allocentric than egocentric reference frame, which supports the idea that allocentric coding is supported by most egocentric-related regions but with additional brain areas involved. Our results favor the hypothesis that egocentric spatial coding is more primary and occurs almost automatically, while allocentric representations are likely derived from egocentric ones and require additional attentional resources. Future studies may also address the functional connectivity between these areas and clarify the information flow involved in the egocentric and allocentric networks. References Derbie AY, Chau BKH, Wong CHY, Chen LD, Ting KH, Lam BYH, Chan CCH (2021a) Common and distinct neural trends of allo­ centric and egocentric spatial coding: an ALE Meta-analysis. Eur J Neurosci. https://doi.org/10.1111/ejn.15240 Data Availability  The data from this study will be available on request from the corresponding authors. Derbie AY, Chau B, Lam B, Fang YH, Ting KH, Wong CY, Chan H, C. C. H (2021b) Cortical hemodynamic response Associated with spatial coding: a Near-Infrared Spectroscopy Study. Brain Topogr 34(2):207–220. https://doi.org/10.1007/s10548-021-00821-9 Declarations Ethics approval  This study was performed in line with the principles of the Declaration of Helsinki. Approval was granted by the The Eth­ ics Committee of Charles University, Second Faculty of Medicine and University Hospital Motol (Date 25.03.2015/ No. 16-07690 S). Dilks DD, Julian JB, Paunov AM, Kanwisher N (2013) The occipi­ tal place area is causally and selectively involved in scene per­ ception. J Neurosci 33(4):1331–1336a. https://doi.org/10.1523/ JNEUROSCI.4081-12.2013 Fajnerova I, Rodriguez M, Levcik D, Konradova L, Mikolas P, Brom C, Horacek J (2014) A virtual reality task based on animal research - spatial learning and memory in patients after the first episode of schizophrenia. Front Behav Neurosci 8:157. https:// doi.org/10.3389/fnbeh.2014.00157 Competing Interests  The authors declare no competing interests. Competing Interests  The authors declare no competing interests. org/10.3389/fnhum.2014.00150 Kunz L, Brandt A, Reinacher PC, Staresina BP, Reifenstein ET, Wei­ demann CT, Jacobs J (2021) A neural code for egocentric spatial maps in the human medial temporal lobe. Neuron. https://doi. org/10.1016/j.neuron.2021.06.019 Goodale MA, Milner AD (1992) Separate visual pathways for per­ ception and action. Trends Neurosci 15(1):20–25. https://doi. org/10.1016/0166-2236(92)90344-8 Lachaux JP, Axmacher N, Mormann F, Halgren E, Crone NE (2012) High-frequency neural activity and human cognition: past, present and possible future of intracranial EEG research. Prog Neurobiol 98(3):279–301. https://doi.org/10.1016/j.pneurobio.2012.06.008 Goodale MA, Westwood DA, Milner AD (2004) Two distinct modes of control for object-directed action. In: The roots of visual aware­ ness: a festschrift in honour of Alan Cowey, pp 131–144. https:// doi.org/10.1016/s0079-6123(03)14409-3 Li J, Zhang R, Liu S, Liang Q, Zheng S, He X, Huang R (2021) Human spatial navigation: neural representations of spatial scales and ref­ erence frames obtained from an ALE meta-analysis. NeuroImage 238:118264. https://doi.org/10.1016/j.neuroimage.2021.118264 Grefkes C, Fink GR (2005) The functional organization of the intrapa­ rietal sulcus in humans and monkeys. J Anat 207(1):3–17. https:// doi.org/10.1111/j.1469-7580.2005.00426.x Lifshitz M, Thibault RT, Roth RR, Raz A (2017) Source localization of Brain States Associated with Canonical Neuroimaging Pos­ tures. J Cogn Neurosci 29(7):1292–1301. https://doi.org/10.1162/ jocn_a_01107 Grimsen C, Hildebrandt H, Fahle M (2008) Dissociation of egocentric and allocentric coding of space in visual search after right middle cerebral artery stroke. Neuropsychologia 46(3):902–914. https:// doi.org/10.1016/j.neuropsychologia.2007.11.028 Maguire EA, Burgess N, Donnett JG, Frackowiak RS, Frith CD, O’Keefe J (1998) Knowing where and getting there: a human navigation network. Science 280(5365):921–924. https://doi. org/10.1126/science.280.5365.921 Hammer J, Pistohl T, Fischer J, Krsek P, Tomasek M, Marusic P, Ball T (2016) Predominance of Movement Speed over direction in neu­ ronal Population signals of Motor Cortex: intracranial EEG data and a simple explanatory model. Cereb Cortex 26(6):2863–2881. https://doi.org/10.1093/cercor/bhw033 Mai JK, Majtanik M, Paxinos G (2015) Atlas of the human brain. Aca­ demic Press Manning JR, Jacobs J, Fried I, Kahana MJ (2009) Broadband shifts in local field potential power spectra are correlated with single-neu­ ron spiking in humans. J Neurosci 29(43):13613–13620. https:// doi.org/10.1523/JNEUROSCI.2041-09.2009 Hirshhorn M, Grady C, Rosenbaum RS, Winocur G, Moscovitch M (2012) The hippocampus is involved in mental navigation for a recently learned, but not a highly familiar environment: a lon­ gitudinal fMRI study. Hippocampus 22(4):842–852. https://doi. Competing Interests  The authors declare no competing interests. Competing Interests  The authors declare no competing interests. Open Access  This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not Filimon F (2015) Are all spatial reference frames egocentric? Rein­ terpreting evidence for Allocentric, Object-Centered, or World- Centered reference frames. Front Hum Neurosci 9:648. https:// doi.org/10.3389/fnhum.2015.00648 Galati G, Lobel E, Vallar G, Berthoz A, Pizzamiglio L, Le Bihan D (2000) The neural basis of egocentric and allocentric coding of 1 1 3 888 Brain Topography (2023) 36:870–889 boundaries during Navigation. Curr Biol 26(8):1104–1109. https://doi.org/10.1016/j.cub.2016.02.066 space in humans: a functional magnetic resonance study. Exp Brain Res 133(2):156–164. https://doi.org/10.1007/s002210000375 Kamps FS, Julian JB, Kubilius J, Kanwisher N, Dilks DD (2016) The occipital place area represents the local elements of scenes. NeuroImage 132:417–424. https://doi.org/10.1016/j. neuroimage.2016.02.062 Galati G, Pelle G, Berthoz A, Committeri G (2010) Multiple refer­ ence frames used by the human brain for spatial perception and memory. Exp Brain Res 206(2):109–120. https://doi.org/10.1007/ s00221-010-2168-8 Klatzky RL (1998) Allocentric and egocentric spatial representa­ tions: definitions, distinctions, and interconnections. In: Freksa C, Habel C, Wender KF (eds) Spatial cognition: an Interdis­ ciplinary Approach to representing and Processing spatial knowledge. Springer, Berlin Heidelberg, pp 1–17. https://doi. org/10.1007/3-540-69342-4_1 Genovese CR, Lazar NA, Nichols T (2002) Thresholding of statisti­ cal maps in functional neuroimaging using the false discov­ ery rate. NeuroImage 15(4):870–878. https://doi.org/10.1006/ nimg.2001.1037i Gomez A, Rousset S, Charnallet A (2012) Spatial deficits in an amnesic patient with hippocampal damage: questioning the multiple trace theory. Hippocampus 22(6):1313–1324. https://doi.org/10.1002/ hipo.20968 Kravitz DJ, Saleem KS, Baker CI, Mishkin M (2011) A new neu­ ral framework for visuospatial processing. Nat Rev Neurosci 12(4):217–230. https://doi.org/10.1038/nrn3008 Gomez A, Cerles M, Rousset S, Remy C, Baciu M (2014) Differential hippocampal and retrosplenial involvement in egocentric-updat­ ing, rotation, and allocentric processing during online spatial encoding: an fMRI study. Front Hum Neurosci 8:150. https://doi. Competing Interests  The authors declare no competing interests. org/10.1002/hipo.20944 Miller KJ, Honey CJ, Hermes D, Rao RP, denNijs M, Ojemann JG (2014) Broadband changes in the cortical surface poten­ tial track activation of functionally diverse neuronal popula­ tions. Neuroimage 85 Pt 2:711–720. https://doi.org/10.1016/j. neuroimage.2013.08.070 Hutchison RM, Gallivan JP (2018) Functional coupling between frontoparietal and occipitotemporal pathways during action and perception. Cortex 98:8–27. https://doi.org/10.1016/j. cortex.2016.10.020 Miyakoshi M, Gehrke L, Gramann K, Makeig S, Iversen J (2021) The AudioMaze: an EEG and motion capture study of human spatial navigation in sparse augmented reality. Eur J Neurosci. https:// doi.org/10.1111/ejn.15131 Iaria G, Chen JK, Guariglia C, Ptito A, Petrides M (2007) Retrosple­ nial and hippocampal brain regions in human navigation: com­ plementary functional contributions to the formation and use of cognitive maps. Eur J Neurosci 25(3):890–899. https://doi. org/10.1111/j.1460-9568.2007.05371.x doi.org/10.1111/ejn.15131 Moraresku S, Vlcek K (2020) The use of egocentric and allocentric ref­ erence frames in static and dynamic conditions in humans. Physiol Res 69(5):787–801. https://doi.org/10.33549/physiolres.934528 Janca R, Jezdik P, Cmejla R, Tomasek M, Worrell GA, Stead M, Marusic P (2015) Detection of interictal epileptiform discharges using signal envelope distribution modelling: application to epi­ leptic and non-epileptic intracranial recordings. Brain Topogr 28(1):172–183. https://doi.org/10.1007/s10548-014-0379-1 Mukamel R, Gelbard H, Arieli A, Hasson U, Fried I, Malach R (2005) Coupling between neuronal firing, field potentials, and FMRI in human auditory cortex. Science 309(5736):951–954. https://doi. org/10.1126/science.1110913 Musch K, Hamame CM, Perrone-Bertolotti M, Minotti L, Kahane P, Engel AK, Schneider TR (2014) Selective attention modulates high-frequency activity in the face-processing network. Cortex 60:34–51. https://doi.org/10.1016/j.cortex.2014.06.006 Janzen G, van Turennout M (2004) Selective neural representation of objects relevant for navigation. Nat Neurosci 7(6):673–677. https://doi.org/10.1038/nn1257f Jordan K, Schadow J, Wuestenberg T, Heinze HJ, Jancke L (2004) Differ­ ent cortical activations for subjects using allocentric or egocentric strategies in a virtual navigation task. NeuroReport 15(1):135– 140. https://doi.org/10.1097/00001756-200401190-00026 Nakamura K, Kawashima R, Sato N, Nakamura A, Sugiura M, Kato T, Zilles K (2000) Functional delineation of the human occipito-temporal areas related to face and scene processing. A PET study. Brain 123 (Pt 91903–1912. https://doi.org/10.1093/ brain/123.9.1903 Julian JB, Ryan J, Hamilton RH, Epstein RA (2016) The Occipital Place Area is causally involved in representing environmental 1 3 Brain Topography (2023) 36:870–889 889 and face processing: a MEG study. NeuroReport 10(17):3633– 3637. https://doi.org/10.1097/00001756-199911260-00031 and face processing: a MEG study. NeuroReport 10(17):3633– 3637. https://doi.org/10.1097/00001756-199911260-00031 Nyffeler T, Gutbrod K, Pflugshaupt T, Vonwartburg R, Hess C, Muri R (2005) Allocentric and egocentric spatial impairments in a case of Topographical Disorientation. Cortex 41(2):133–143. https://doi. org/10.1016/s0010-9452(08)70888-8i Spiers HJ, Maguire EA (2007) A navigational guidance system in the human brain. Hippocampus 17(8):618–626. https://doi. org/10.1002/hipo.20298 Ojemann GA, Corina DP, Corrigan N, Schoenfield-McNeill J, Polia­ kov A, Zamora L, Zanos S (2010) Neuronal correlates of func­ tional magnetic resonance imaging in human temporal cortex. Brain 133 Pt 146–59. https://doi.org/10.1093/brain/awp227 Szczepanski SM, Konen CS, Kastner S (2010) Mechanisms of spatial attention control in frontal and parietal cor­ tex. J Neurosci 30(1):148–160. https://doi.org/10.1523/ JNEUROSCI.3862-09.2010 Parslow DM, Rose D, Brooks B, Fleminger S, Gray JA, Giampietro V, Morris RG (2004) Allocentric spatial memory activation of the hippocampal formation measured with fMRI. Neuropsychology 18(3):450–461. https://doi.org/10.1037/0894-4105.18.3.450 Tanji J, Hoshi E (2008) Role of the lateral prefrontal cortex in execu­ tive behavioral control. Physiol Rev 88(1):37–57. https://doi. doi.org/10.1111/ejn.15131 org/10.1152/physrev.00014.2007 Peirce J, Gray JR, Simpson S, MacAskill M, Hochenberger R, Sogo H, Lindelov JK (2019) PsychoPy2: experiments in behavior made easy. Behav Res Methods 51(1):195–203. https://doi. org/10.3758/s13428-018-01193-y Tsutsui K, Taira M, Sakata H (2005) Neural mechanisms of three- dimensional vision. Neurosci Res 51(3):221–229. https://doi. org/10.1016/j.neures.2004.11.006 Vidal JR, Ossandon T, Jerbi K, Dalal SS, Minotti L, Ryvlin P, Lach­ aux JP (2010) Category-specific visual responses: an intracra­ nial study comparing Gamma, Beta, Alpha, and ERP Response selectivity. Front Hum Neurosci 4:195. https://doi.org/10.3389/ fnhum.2010.00195 Ptak R (2012) The frontoparietal attention network of the human brain: action, saliency, and a priority map of the environment. Neurosci­ entist 18(5):502–515. https://doi.org/10.1177/1073858411409051 Ray D, Hajare N, Roy D, Banerjee A (2020) Large-scale functional integration, rather than functional dissociation along dorsal and ventral streams, underlies visual perception and action. J Cogn Neurosci 32(5):847–861. https://doi.org/10.1162/jocn_a_01527 Vlcek K, Fajnerova I, Nekovarova T, Hejtmanek L, Janca R, Jezdik P, Marusic P (2020) Mapping the scene and object Processing Networks by Intracranial EEG. Front Hum Neurosci 14:561399. https://doi.org/10.3389/fnhum.2020.561399 Rodriguez PF (2010) Human navigation that requires calculating heading vectors recruits parietal cortex in a virtual and visually sparse water maze task in fMRI. Behav Neurosci 124(4):532– 540. https://doi.org/10.1037/a0020231 Weniger G, Irle E (2006) Posterior parahippocampal gyrus lesions in the human impair egocentric learning in a virtual envi­ ronment. Eur J Neurosci 24(8):2406–2414. https://doi. org/10.1111/j.1460-9568.2006.05108.x Rosenbaum RS, Ziegler M, Winocur G, Grady CL, Moscovitch M (2004) I have often walked down this street before”: fMRI studies on the hippocampus and other structures during mental naviga­ tion of an old environment. Hippocampus 14(7):826–835. https:// doi.org/10.1002/hipo.10218 Weniger G, Siemerkus J, Schmidt-Samoa C, Mehlitz M, Baudewig J, Dechent P, Irle E (2010) The human parahippocampal cor­ tex subserves egocentric spatial learning during navigation in a virtual maze. Neurobiol Learn Mem 93(1):46–55. https://doi. org/10.1016/j.nlm.2009.08.003f Ruggiero G, Iachini T, Ruotolo F, Senese V (2009) Spatial Mem­ ory: the role of egocentric and allocentric frames of reference In Thomas JB (Ed.), Spatial Memory: Visuospatial processes, cognitive performance and developmental effects (pp. 51–75). Hauppauge, NY: Nova Science Publishers Wilson KD, Woldorff MG, Mangun GR (2005) Control net­ works and hemispheric asymmetries in parietal cortex dur­ ing attentional orienting in different spatial reference frames. NeuroImage 25(3):668–683. https://doi.org/10.1016/j. neuroimage.2004.07.075 Ruggiero G, D’Errico O, Iachini T (2016) Development of egocen­ tric and allocentric spatial representations from childhood to elderly age. Psychol Res 80(2):259–272. doi.org/10.1111/ejn.15131 https://doi.org/10.1007/ s00426-015-0658-9 Zaehle T, Jordan K, Wustenberg T, Baudewig J, Dechent P, Mast FW (2007) The neural basis of the egocentric and allocentric spa­ tial frame of reference. Brain Res 1137(1):92–103. https://doi. org/10.1016/j.brainres.2006.12.044 Ruotolo F, Ruggiero G, Raemaekers M, Iachini T, van der Ham IJM, Fracasso A, Postma A (2019) Neural correlates of egocentric and allocentric frames of reference combined with metric and non- metric spatial relations. Neuroscience 409:235–252. https://doi. org/10.1016/j.neuroscience.2019.04.021 Publisher’s Note  Springer Nature remains neutral with regard to juris­ dictional claims in published maps and institutional affiliations. Saj A, Cojan Y, Musel B, Honore J, Borel L, Vuilleumier P (2014) Functional neuro-anatomy of egocentric versus allocentric space representation. Neurophysiol Clin 44(1):33–40. https://doi. org/10.1016/j.neucli.2013.10.135 Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law. Sato N, Nakamura K, Nakamura A, Sugiura M, Ito K, Fukuda H, Kawashima R (1999) Different time course between scene processing 1 3 1 3
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Biogenesis and Dynamics of Mitochondria during the Cell Cycle: Significance of 3′UTRs
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INTRODUCTION human pathologies with quite different phenotypic presentations [16], that include physiological ageing [17]. The provision of metabolic energy by oxidative phosphorylation (OXPHOS) is the best characterized function of mitochondria. In the process of oxidative phosphorylation, ATP is synthesized from ADP and Pi by the mitochondrial H+-ATP synthase [18], a rotatory engine complex of the inner mitochondrial membrane that utilizes as driving force the proton electrochemical gradient generated by the respiratory chain [19]. The catalytic activity of the H+-ATP synthase is located in the b-subunit of the water-soluble F1 portion (b-F1-ATPase) of the complex which is encoded in the nuclear genome [20]. The regulation of the expression of b-F1-ATPase is exerted at the level of translation [21–25]. The b-F1-ATPase mRNA (b-mRNA) further provides an example of a mitochondria- localized mRNA in both mammalian [26–29] and lower eukaryotic cells [30,31] whose efficient translation depends on the 39 non-translated region (39UTR) of the mRNA [24,30,32,33]. Translation masking of b-mRNA occurred both in the fetal liver [24] and in hepatomas [25], compromising the biogenesis of mitochondria during development and in oncogenesis [34,35]. Cellular proliferation is an energy consuming activity that is stringently controlled by checkpoints of the cell cycle [1]. Transition from one phase of the cycle to the next is coordinated by the expression of specific cyclins and the sequential activation and inactivation of cyclin-dependent protein kinases [2]. Un- controlled proliferation is one of the hallmarks of the cancer cell [3] that most often results from genetic alterations and/or the inactivation of master regulators of the cell cycle [4]. Cells that make the decision to divide must be therefore metabolically prepared to deal with the energetic demand imposed by pro- liferation. Alternatively, the cells can become reversibly arrested at the G1/S boundary (restriction point) of the cell cycle. In fact, compromising the cellular ATP levels by inhibition of mitochon- drial oxidative phosphorylation [5,6] or by limiting the availability of glucose [1] or by genetic alterations that compromise the bioenergetic activity of mitochondria [7] result in G1 arrest of the cells. The G1/S arrest is triggered by a metabolic stress checkpoint of the cycle that is controlled by the activation of AMP-activated protein kinase (AMPK) [1] which is a metabolic sensor of the energy charge in higher eukaryotic cells [8]. Biogenesis and Dynamics of Mitochondria during the Cell Cycle: Significance of 39UTRs Marta Martı´nez-Diez, Gema Santamarı´a, A´ lvaro D. Ortega, Jose´ M. Cuezva* Marta Martı´nez-Diez, Gema Santamarı´a, A´ lvaro D. Ortega, Jose´ M. Cuezva* e Biologı´a Molecular, Centro de Biologı´a Molecular Severo Ochoa, Universidad Auto´noma de Madrid, Madrid, Spain Departamento de Biologı´a Molecular, Centro de Biologı´a Molecular Severo Ochoa, Universidad Auto´noma de Mad Nowadays, we are facing a renaissance of mitochondria in cancer biology. However, our knowledge of the basic cell biology and on the timing and mechanisms that control the biosynthesis of mitochondrial constituents during progression through the cell cycle of mammalian cells remain largely unknown. Herein, we document the in vivo changes on mitochondrial morphology and dynamics that accompany cellular mitosis, and illustrate the following key points of the biogenesis of mitochondria during progression of liver cells through the cycle: (i) the replication of nuclear and mitochondrial genomes is synchronized during cellular proliferation, (ii) the accretion of OXPHOS proteins is asynchronously regulated during proliferation being the synthesis of b-F1-ATPase and Hsp60 carried out also at G2/M and, (iii) the biosynthesis of cardiolipin is achieved during the S phase, although full development of the mitochondrial membrane potential (DYm) is attained at G2/M. Furthermore, we demonstrate using reporter constructs that the mechanism regulating the accretion of b-F1-ATPase during cellular proliferation is controlled at the level of mRNA translation by the 39UTR of the transcript. The 39UTR-driven synthesis of the protein at G2/M is essential for conferring to the daughter cells the original phenotype of the parental cell. Our findings suggest that alterations on this process may promote deregulated b-F1-ATPase expression in human cancer. Citation: Martı´nez-Diez M, Santamarı´a G, Ortega A´ D, Cuezva JM (2006) Biogenesis and Dynamics of Mitochondria during the Cell Cycle: Significance of 39UTRs. PLoS ONE 1(1): e107. doi:10.1371/journal.pone.0000107 PLoS ONE | www.plosone.org Received September 8, 2006; Accepted November 24, 2006; Published December 20, 2006 Academic Editor: Ju¨rg Ba¨hler, Wellcome Trust Sanger Institute, United Kingdom Received September 8, 2006; Accepted November 24, 2006; Published December 20, 2006 INTRODUCTION The activation of AMPK promotes the phosphorylation of p53 at Ser15 [1], a modification that prevents its degradation and results in the cellular accumulation of p53 and cell-cycle arrest. Various studies have shown that entry of cells into the G1 phase of the cycle is associated with a burst of mitochondrial activity [5,9]. However, it appears that progression through the cycle is supported by non- respiratory modes of energy generation [10–12]. In fact, very recent findings in cells of mammals indicate that cyclin D1 which is involved in the phosphorylation and inactivation of the retinoblastoma protein, marking the entry of cells into the S phase of the cycle, inhibits mitochondrial function [13] and represses the activity of NRF-1 [14], a nuclear factor that masters the transcriptional expression of nuclear-encoded mitochondrial genes [15]. Academic Editor: Ju¨rg Ba¨hler, Wellcome Trust Sanger Institute, United Kingdom Received September 8, 2006; Accepted November 24, 2006; Published December 20, 2006 g , g , g Received September 8, 2006; Accepted November 24, 2006; Published December 20, 2006 Received September 8, 2006; Accepted November 24, 2006; Published December 20, 2006 Copyright:  2006 Martı´nez-Diez et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Funding: M.M-D, G.S. and A.D.O are/were recipients of predoctoral fellowships from the Ministerio de Educacio´n/Ciencia, Spain. This work was supported by grants from the Ministerio de Sanidad (PI041255), Educacio´n y Ciencia (SAF-2005- 4001 and BMC2001-0710)and Fundacio´n Mutua Madrilen˜a, Spain. The CBMSO is the recipient of an institutional grant from Fundacio´n Ramo´n Areces. Competing Interests: The authors have declared that no competing interests exist. Mitochondria participate in a large number of essential cellular functions. Genetic or epigenetic alterations that impact on mitochondrial functions are thus involved in the development of * To whom correspondence should be addressed. E-mail: jmcuezva@cbm.uam. * To whom correspondence should be addressed. E-mail: jmcuezva@cbm.uam. * To whom correspondence should be addressed. E-mail: jmcuezva@cbm.uam. es * To whom correspondence should be addressed. E-mail: jmcuezva@cbm.uam. es PLoS ONE | www.plosone.org December 2006 | Issue 1 | e107 1 Biogenesis of Mitochondria The biogenesis of mitochondria is a complex cellular event requiring the concerted expression of two physically separated genomes [15,35–37]. Biosynthesis of mitochondrial constituents during the cell cycle Subconfluent cultures of liver C9 cells were synchronized by metabolic arrest at the beginning of the S phase (see Fig. S1 in Supporting Information). The arrest of the cell cycle promoted a significant increase in the proportion of cells in G0/G1 concurrent with a reduction of the proportion of cells in S and G2/M (Fig. S1). At various times (0–10 h) after release from the metabolic block cells were recovered and the relative cellular content of mtDNA (Fig. 1A) and mitochondrial proteins (Fig. 1B) determined. It should be noted that at 4h after release from the arrest the percentage of cells in the different phases of the cycle were basically the same (Fig. S1) being the percentage of cells in G2/M 2-fold and 5-fold higher than that of non-arrested and arrested cells, respectively (Fig. S1). The relative cellular content of mitochondrial DNA (mtDNA), as determined by the ratio of the mitochondrial 12S rRNA gene to the nuclear b-F1-ATPase gene did not show significant deviations from the initially observed value (dotted line in Fig. 1A), suggesting that synthesis of nuclear and mitochondrial DNA is coordinated during cell cycle progression. Contrary to this finding, we observed that the relative cellular content of the catalytic subunit of the mitochondrial H+-ATP synthase (b-F1-ATPase/tubulin ratio) and of the structural heat shock protein 60 (hsp60) (hsp60/ Figure 1. Changes in mitochondrial constituents during the cell cycle. Synchronized C9 cells (A–C) were recovered at the indicated time intervals and the relative cellular content of mtDNA (A) and proteins (B–C) determined. No significant changes in the cellular abundance of the mitochondrial 12S gene are observed. However, the cellular content of b-F1-ATPase, Hsp60 and cyclin B1 showed a significant increase at 4 h after release from the metabolic arrest. Representative experiments are shown (A–C). * and **, P,0.05 and ,0.005 when compared with 0–2 h. D, The fluorescence intensity of the NAO probe was used to determine changes on mitochondrial mass during the cell cycle of non-synchronized C9 cells. The results shown are the means6SEM of three experiments. *, P,0.05 when compared with cells in G0/G1. doi:10.1371/journal.pone.0000107.g001 Figure 1. Changes in mitochondrial constituents during the cell cycle. Synchronized C9 cells (A–C) were recovered at the indicated time intervals and the relative cellular content of mtDNA (A) and proteins (B–C) determined. No significant changes in the cellular abundance of the mitochondrial 12S gene are observed. INTRODUCTION However, and despite the relevant role played by mitochondria in the onset and progression of human pathology, our knowledge of the timing of the biosynthesis of the different mitochondrial constituents and on the mechanisms that regulate their biosynthesis during cellular proliferation are scarce or remain largely unknown. Even less explored are the dynamics and changes in mitochondrial morphology during mitosis, a process that is likely to impact on the development of mitochondrial function and on the segregation of the organelles during progression through the cell cycle. Because of the renaissance of mitochondrial studies in cancer biology [38–41], in this work we have studied the timing of the biosynthesis of different mitochondrial constituents during progression through the cell cycle and the changes on mitochondrial morphology and dynamics that accompany cellular mitosis. Mechanistically, we document the relevance that the 39UTR (39 non-translated region) of b-mRNA has for the synthesis of the protein at G2/M and illustrate the role that a regulatory mRNA sequence has for the appropriate biogenesis of mitochondria in the daughter cells with the same bioenergetic phenotype than that of the parental cell. This discovery highlights a previously unappreciated relationship between the control of translation at G2/M and the biogenesis of mammalian mitochondria that is likely to influence the cancer field. Asynchronous accretion of mitochondrial proteins during the cycle g To test the possibility that changes in the translation efficiency of b-mRNA could trigger the accumulation of the protein during progression through the cycle we studied the expression of a gfp reporter derived from a construct that contained the 39UTR regulatory element of b-mRNA translation [24,32]. However, and because of the cytotoxic effect of gfp when it is expressed in the cytoplasm [33] the development of stable cellular clones by this approach resulted unsuccessful. Therefore, we decided to target gfp to the mitochondria by inframe fusion at the N-terminal of gfp the presequence of the rat liver b-F1-ATPase precursor protein. This strategy allowed the generation of stable clones of mammalian cells that express gfp in their mitochondria (Fig. 3A) as assessed by confocal (Fig. 3B) and immunoelectron (Fig. 3C) microscopy. Interestingly, it was not possible to detect significant amounts of the pb-gfp chimeric protein in cellular extracts of the C9-pbGFP39b clone (see Fig. 3D, lane 1), suggesting a fast and efficient in vivo import of the chimeric protein in this cell line. However, when transfecting the same construct into BHK cells we detected the pb-gfp precursor (Fig. 3D, lane 2). Moreover, treatment of these cells with carbonyl cyanide p-trifluoro- methoxy-phenylhydrazone (FCCP), a drug that collapses DYm and prevents the import of precursor proteins into the organelle, revealed the rapid accumulation of pb-gfp in BHK cellular extracts (Fig. 3D, lanes 3). Upon removal of FCCP from the culture medium, the pb-gfp precursor was rapidly imported into mitochondria and processed to mature gfp (Fig. 3D, lane 4). These results illustrate cell-type specific differences in the import pathway of proteins into mitochondria in cells of mammals. To test the possibility that changes in the translation efficiency of b-mRNA could trigger the accumulation of the protein during progression through the cycle we studied the expression of a gfp reporter derived from a construct that contained the 39UTR regulatory element of b-mRNA translation [24,32]. However, and because of the cytotoxic effect of gfp when it is expressed in the cytoplasm [33] the development of stable cellular clones by this approach resulted unsuccessful. Therefore, we decided to target gfp to the mitochondria by inframe fusion at the N-terminal of gfp the presequence of the rat liver b-F1-ATPase precursor protein. g y The cellular content of various mitochondrial proteins was further analyzed by flow cytometry in non-synchronized C9 cells (see Fig. Asynchronous accretion of mitochondrial proteins during the cycle S2 in Supplementary Information for controls of cytometry and representative experiments for each of the protein markers assayed). We observed that whereas the nuclear (COXIV) and mitochondrial (COXI) encoded subunits of respiratory complex IV (cytochrome c oxidase subunits IV and I, respectively) accumulated almost entirely during S phase (Figs. 2A and S2), the accumulation of b-F1-ATPase and hsp60 occurred throughout the cycle with a significant increase at G2/M when compared to cells in S phase (Figs. 2A and S2). The preferential build up of b- F1-ATPase and hsp60 at G2/M, and parallel accretion of these two proteins during the cycle, was further confirmed by western blotting of cells sorted according to their DNA content as revealed by the sharp increase in b-F1/COXIV ratio at G2/M (Fig. 2B) and the lack of significant deviations in b-F1/hsp60 ratio (Fig. 2B), respectively. Functional differentiation of mitochondria during the cell cycle To assess the stage of functional differentiation of mitochondria during the cell cycle, changes in the mitochondrial membrane potential (DYm) were determined by FACS analysis using the TMRM+ probe. The mean fluorescence intensity of TMRM- stained cells increased significantly in S phase when compared to cells in G0/G1 (Fig. 2D). However, and contrary to the results observed with the NAO probe (Fig. 1D), the mean fluorescence intensity of TMRM-stained cells further showed a significant increase at G2/M (Fig. 2D), indicating that full development of DYm is attained only after G2/M-dependent events have been completed. To assess the build up of the inner mitochondrial membrane during progression through the cycle changes in the amount of cardiolipin were determined by flow cytometry using the fluorescent NAO probe (Fig. 1D). The mean fluorescence intensity of NAO-stained cells increased significantly in S phase when compared to cells in G0/G1 (Fig. 1D). No further significant changes were observed in NAO fluorescence in the cells at G2/M (Fig. 1D), indicating that the biosynthesis of the phospholipid of the inner membrane is completed in S phase. Biosynthesis of mitochondrial constituents during the cell cycle However, the cellular content of b-F1-ATPase, Hsp60 and cyclin B1 showed a significant increase at 4 h after release from the metabolic arrest. Representative experiments are shown (A–C). * and **, P,0.05 and ,0.005 when compared with 0–2 h. D, The fluorescence intensity of the NAO probe was used to determine changes on mitochondrial mass during the cell cycle of non-synchronized C9 cells. The results shown are the means6SEM of three experiments. *, P,0.05 when compared with cells in G0/G1. doi:10.1371/journal.pone.0000107.g001 December 2006 | Issue 1 | e107 PLoS ONE | www.plosone.org 2 Biogenesis of Mitochondria tubulin ratio) showed a significant increase at 4 h (Fig. 1B). Analysis of the cellular expression level of cyclin B1 (cyclin B1/ tubulin ratio), that is known to peak at mitosis, also revealed a significant increase 4h after initiation of the cell cycle (Fig. 1C), suggesting that mitosis is the cell-cycle phase where the preferential synthesis of these mitochondrial proteins is taking place. The preferential synthesis of b-F1-ATPase at G2/M occurs in the absence of changes in mRNA abundance To explore the possibility that b-F1-ATPase mRNA abundance could be regulated during the cycle gearing the synthesis and accumulation of the protein we determined the relative cellular content of b-mRNA in synchronized C9 cells at various times after release from the metabolic block. The expression of b- mRNA was determined (Fig. 2C) in the same cultures where the protein expression was assessed (Fig. 1B). No significant changes in the relative cellular content of b-mRNA (as assessed by any of the following ratios: b-mRNA/18S rRNA, b-mRNA/ ATPase 6–8 mRNA and b-mRNA/12S rRNA) was observed (Fig. 2C). Furthermore, we also determined the relative expression of b-mRNA in cells sorted according to their DNA content and found the lack of significant changes in the normalized expression of b-mRNA in the different phases of the cycle (1.0060.10, 0.8360.12 and 1.2160.10 for cells in G0/ G1, S and G2/M, respectively). Overall, the results suggest that the accumulation of the protein during cellular proliferation (Figs. 1B, 2A and 2B) is mainly controlled at the level of translation although it cannot be excluded that mechanisms that control the subcellular localization of the mRNA [26–29,31] might as well contribute to the observed accretion of the protein during the cell cycle. Gfp derived from the C9-pbGFP39b clone is preferentially synthesized at G2/M The results shown are the means6SEM of three experiments. *, P,0.05 when compared with cells in G0/G1. doi:10.1371/journal.pone.0000107.g002 Figure 2. Asynchronous accumulation of mitochondrial proteins and development DYm during the cell cycle. A, Determination of the expression level of b-F1-ATPase (b-F1), Hsp60 and cytochrome c oxidase subunits I (COXI) and IV (COXIV) in C9 cells in the different phases of cell cycle by flow cytometry. Open bars, G0/G1; grey bars, S and black bars, G2/M. The results shown are the means6SEM of four experiments. * and #, P, 0.05 when compared with cells in G0/G1 and S, respectively. B, C9 cells were sorted by flow cytometry according to their DNA content and the protein extracts fractionated and blotted with the indicated antibodies. The two bands shown under each condition are from two independent experiments. The results shown in the graph are the means6SEM of three experiments. *, P,0.05 when compared with cells in S phase. C, Synchronized C9 cells were recovered at the indicated time intervals and the relative cellular content of b-F1-ATPase mRNA determined by Northern-blot analysis. The mitochondrial encoded ATPase 6–8 mRNA and 12S rRNA and the nuclear encoded 18S rRNA were also determined. The results shown are the means6SEM of four experiments. D, FACS determination of the mitochondrial membrane potential (DYm) in C9 cells in the different phases of the cell cycle. The results shown are the means6SEM of three experiments. *, P,0.05 when compared with cells in G0/G1. doi:10.1371/journal.pone.0000107.g002 clones of the C9 cell line in which the 39UTR of b-mRNA was replaced by the 39UTR of mitochondrial transcription factor A (Tfam). The 39UTR of Tfam lacks translation enhancing activity when compared to the activity of the 39UTRs of other OXPHOS transcripts [33]. Consistent with this, we observed that the expression of gfp in C9-pbGFP39Tfam cells was much less than Gfp derived from the C9-pbGFP39b clone is preferentially synthesized at G2/M p y y Analysis of the relative cellular expression level of gfp in non- synchronized C9-pbGFP39b cells, as assessed by the gfp/tubulin ratio, revealed a constant expression level of the protein as cells proliferate (data not shown). In contrast, the same analysis in synchronized C9-pbGFP39b cells revealed a significant and preferential accumulation of gfp at 4 h after release from the metabolic block (Fig. 4A), indicating that the synthesis of gfp driven from the construct that contains the presequence and 39UTR of b-mRNA coincides with that of the endogenous b-F1- ATPase (Fig. 1B) and is preferential at the time of mitosis (Fig. 1C). Determination of the relative cellular content of the chimeric gfp- mRNA in synchronized C9-pbGFP39b cells revealed a constant expression level of this mRNA during the cycle (Fig. 4B), suggesting that the accumulation of gfp at G2/M is controlled at the level of translation. PLoS ONE | www.plosone.org PLo December 2006 | Issue 1 | e107 PLoS ONE | www.plosone.org 3 Biogenesis of Mitochondria Th 39UTR f b RNA t l th l ti f clones of the C9 cell line in which the 39UTR of b mRNA was Figure 2. Asynchronous accumulation of mitochondrial proteins and development DYm during the cell cycle. A, Determination of the expression level of b-F1-ATPase (b-F1), Hsp60 and cytochrome c oxidase subunits I (COXI) and IV (COXIV) in C9 cells in the different phases of cell cycle by flow cytometry. Open bars, G0/G1; grey bars, S and black bars, G2/M. The results shown are the means6SEM of four experiments. * and #, P, 0.05 when compared with cells in G0/G1 and S, respectively. B, C9 cells were sorted by flow cytometry according to their DNA content and the protein extracts fractionated and blotted with the indicated antibodies. The two bands shown under each condition are from two independent experiments. The results shown in the graph are the means6SEM of three experiments. *, P,0.05 when compared with cells in S phase. C, Synchronized C9 cells were recovered at the indicated time intervals and the relative cellular content of b-F1-ATPase mRNA determined by Northern-blot analysis. The mitochondrial encoded ATPase 6–8 mRNA and 12S rRNA and the nuclear encoded 18S rRNA were also determined. The results shown are the means6SEM of four experiments. D, FACS determination of the mitochondrial membrane potential (DYm) in C9 cells in the different phases of the cell cycle. The 39UTR of b-mRNA controls the accumulation of the protein at G2/M The migration of the pb-gfp chimera is also indicated. In lane 3, BHK cells have been previously treated with FCCP (4 mM) plus oligomycin (2 mM) for 1 hour. Note the accumulation of pb-gfp. In lane 4, BHK cells treated as in lane 3 were washed for 40 minutes before fractionation. Note the processing of pb-gfp to mature gfp. doi:10.1371/journal.pone.0000107.g003 apoptosis [6,44], Ca2+ signaling [45], viral infection [46] and impact on various human pathologies [47]. However, the timing of the morphological changes experienced by mitochondria during mitosis in cells of mammals is unknown. In this regard, the generation of mammalian cell lines with green mitochondria allowed us to visualize in vivo the morphology and dynamics of mitochondria during mitosis (see supporting video S1 and Fig. S3) as well as within the context of elements of the cytoskeleton (Fig. 5). that in C9-pbGFP39b cells (Fig. 4C). However, the C9- pbGFP39Tfam clone also efficiently targeted gfp to mitochondria in C9 cells showing no cellular accumulation of the pb-gfp chimera (Fig. 4C, and data not shown). To assess the role of the 39UTRs in the synthesis of gfp during the cycle we determined the relative changes in gfp fluorescence of the C9-pbGFP39b and C9-pbGFP39Tfam cells (Fig. 4D). In both clones the mean fluorescence intensity of the cells increased as they progress through the cycle (Fig. 4D). However, the relative increase in cellular fluorescence observed in C9-pbGFP39b cells exceeded by far that determined in C9-pbGFP39Tfam cells both in S phase and at G2/M (Fig. 4D). In fact, C9-pbGFP39Tfam cells did not synthesize the amount of gfp that is required for appropriate cellular division into daughter cells with the same maternal gfp phenotype (Fig. 4D). Therefore, the results support that the 39UTR of b-mRNA is the core controlling element required for the biosynthesis of b-F1-ATPase and for the appro- priate biogenesis of mitochondria during cellular proliferation. y ( g ) The analysis of synchronized C9-pbGFP39b cells at 4h after release from the metabolic block confirmed that a large proportion of the cells (.40%) were undergoing mitosis (Fig. 5). The morphology of mitochondria in cells in interphase is that of threads, or of a tubular network, that it is intertwined with the tubulin and actin cytoskeleton. Mitochondria in cells in interphase are preferentially clustered around the nucleus, although some mitochondria are also located in the cell periphery (Fig. 5). The 39UTR of b-mRNA controls the accumulation of the protein at G2/M In order to define which of the two b-mRNA elements (presequence and 39UTR) is responsible for the preferential synthesis of the protein at G2/M we generated additional stable PLoS ONE | www.plosone.org December 2006 | Issue 1 | e107 December 2006 | Issue 1 | e107 4 Biogenesis of Mitochondria Figure 3. The presequence of b-F1-ATPase precursor targets gfp to mitochondria. The expression of gfp in C9 (A,B) and BHK (C) cells was assessed by fluorescence (A), immunofluorescence (B) and immunoelectron (C) microscopy. A, Illustrates by phase contrast (upper panel) and immunofluorescence (lower panel) the same low magnification field of C9-pbGFP39b cells. B, C9-pbGFP39b cells analyzed by immunofluorescence microscopy using anti-b-F1-ATPase antibody at 636 magnification. Upper panel, green gfp fluorescence; middle panel, red b-F1-ATPase immunostaining; lower panel, yellow merged image. C, Specific immunogold labeling (10 nm gold) of BHK mitochondria (m). Note the lack of gold labeling of other structures in the cytoplasm or in the nucleus (n) of the cell. D, Western blots of C9 (lane 1) and BHK cells (lanes 2–4) transfected with the pbGFP39b construct. Fractionated proteins from the cellular extracts were probed with anti-gfp and anti-tubulin, the later as loading control. The migration of the pb-gfp chimera is also indicated. In lane 3, BHK cells have been previously treated with FCCP (4 mM) plus oligomycin (2 mM) for 1 hour. Note the accumulation of pb-gfp. In lane 4, BHK cells treated as in lane 3 were washed for 40 minutes before fractionation. Note the processing of pb-gfp to mature gfp. doi:10.1371/journal.pone.0000107.g003 Figure 3. The presequence of b-F1-ATPase precursor targets gfp to mitochondria. The expression of gfp in C9 (A,B) and BHK (C) cells was assessed by fluorescence (A), immunofluorescence (B) and immunoelectron (C) microscopy. A, Illustrates by phase contrast (upper panel) and immunofluorescence (lower panel) the same low magnification field of C9-pbGFP39b cells. B, C9-pbGFP39b cells analyzed by immunofluorescence microscopy using anti-b-F1-ATPase antibody at 636 magnification. Upper panel, green gfp fluorescence; middle panel, red b-F1-ATPase immunostaining; lower panel, yellow merged image. C, Specific immunogold labeling (10 nm gold) of BHK mitochondria (m). Note the lack of gold labeling of other structures in the cytoplasm or in the nucleus (n) of the cell. D, Western blots of C9 (lane 1) and BHK cells (lanes 2–4) transfected with the pbGFP39b construct. Fractionated proteins from the cellular extracts were probed with anti-gfp and anti-tubulin, the later as loading control. The 39UTR of b-mRNA controls the accumulation of the protein at G2/M By the time cells enter mitosis the mitochondrial tubular network is disorganized and fission of the thread-like organelles had occurred with some of the mitochondria already appearing as punctuate organelles (especially in metaphase) (Fig. 5). During the early stages of mitosis mitochondria are excluded from the cellular space where the mitotic spindle is being assembled (prophase) as well as from the equator of the spindle where the chromosomes line up (metaphase) (Fig. 5). During anaphase mitochondria still display a punctuate morphology appearing evenly distributed in the cell periphery (Fig. 5). By the time of late-anaphase or early-telophase Dynamics of the mitochondrial network during mitosis The mitochondrial network is a dynamic structure that is permanently subjected to remodeling by changes in the morphol- ogy and subcellular localization of the organelles [42]. Organelle changes are relevant for cellular metabolism [43], the execution of December 2006 | Issue 1 | e107 PLoS ONE | www.plosone.org 5 Biogenesis of Mitochondria Figure 4. The 39UTR of b-F1-ATPase mRNA controls the accumulation of the protein at G2/M. Synchronized C9-pbGFP39b cells (A,B) were recovered at the indicated time intervals and the relative cellular content of gfp protein (gfp/tubulin ratio) (A) and gfp mRNA (gfp/12S ratio) (B) determined. The results shown are the means6SEM of three (A) and four (B) experiments. A significant accumulation of gfp protein was observed at four h after release from the metabolic arrest. *, P,0.0005 when compared with 0–2 h. No significant changes in the cellular abundance of gfp mRNA was observed during cellular proliferation. C, The upper panel shows a merged image of the immunofluorescence microscopy of C9-pbGFPTfam cells that illustrates the co-localization of gfp and b-F1-ATPase, thus revealing the efficient targeting of gfp to mitochondria in this cellular clone (for other details see Fig. 3B). The lower panel shows the western blots of fractionated proteins from cellular extracts of parental C9 (C9), C9-pbGFP39b (39b) and C9-pbGFPTfam (Tfam) cells simultaneously probed with anti-gfp and anti-tubulin. D, Analysis of gfp expression in C9-pbGFP39b (closed bars) and C9- pbGFP39Tfam (open bars) cells in the different phases of the cell cycle by flow cytometry. The results shown are the means6SEM of four experiments. *, P,0.05 when compared with C9-pbGFP39b cells and #, P,0.05 when compared S with G2/M in C9-pbGFP39b cells. doi:10.1371/journal.pone.0000107.g004 Figure 4. The 39UTR of b-F1-ATPase mRNA controls the accumulation of the protein at G2/M. Synchronized C9-pbGFP39b cells (A,B) were recovered at the indicated time intervals and the relative cellular content of gfp protein (gfp/tubulin ratio) (A) and gfp mRNA (gfp/12S ratio) (B) determined. The results shown are the means6SEM of three (A) and four (B) experiments. A significant accumulation of gfp protein was observed at four h after release from the metabolic arrest. *, P,0.0005 when compared with 0–2 h. No significant changes in the cellular abundance of gfp mRNA was observed during cellular proliferation. Dynamics of the mitochondrial network during mitosis C, The upper panel shows a merged image of the immunofluorescence microscopy of C9-pbGFPTfam cells that illustrates the co-localization of gfp and b-F1-ATPase, thus revealing the efficient targeting of gfp to mitochondria in this cellular clone (for other details see Fig. 3B). The lower panel shows the western blots of fractionated proteins from cellular extracts of parental C9 (C9), C9-pbGFP39b (39b) and C9-pbGFPTfam (Tfam) cells simultaneously probed with anti-gfp and anti-tubulin. D, Analysis of gfp expression in C9-pbGFP39b (closed bars) and C9- pbGFP39Tfam (open bars) cells in the different phases of the cell cycle by flow cytometry. The results shown are the means6SEM of four experiments. *, P,0.05 when compared with C9-pbGFP39b cells and #, P,0.05 when compared S with G2/M in C9-pbGFP39b cells. doi:10.1371/journal.pone.0000107.g004 DISCUSSION some punctuate mitochondria initiate the repopulation of the spindle equator after the segregation of the daughter chromosomes had occurred (Fig. 5). In late-telophase, just before cytokinesis, mitochondria initiate their change in morphology also appearing as thread-like structures (Fig. 5). Overall, the cellular distribution of mitochondria during mitosis appears not to be co-distributed with the majority of the tubulin and b-actin cytoskeleton (Fig. 5). Of note is the enrichment of b-actin in the cell cortex (the red layer beneath the plasma membrane) during mitosis (Figs. 5g, 5h) that governs the formation of filopodia (the thin red stiff protrusions on Fig. 5g) responsible for promoting the dramatic changes in cell shape during mitosis (see phase contrast images on supporting video S1 and Fig. S3). The timing of the biosynthesis of mtDNA in cells of mammals during progression through the cell-cycle is nowadays a matter of debate. In this regard, the replication of mtDNA has been described to proceed continuously during the cycle [48,49] or to occur at a specific stage of the cycle (late S-G2/M) after most nDNA synthesis has been completed [50,51]. The lack of significant changes on the cellular representation of mtDNA in liver cells during cellular proliferation suggests that mtDNA and nDNA synthesis is coordinated and supports a concerted trans- activation of the replication of both genomes [52]. The synchron- ous replication of both genomes is not incompatible with localized PLoS ONE | www.plosone.org PLoS ONE | www.plosone.org December 2006 | Issue 1 | e107 6 Biogenesis of Mitochondria Figure 5. Morphological changes in the cellular mitochondrial network during mitosis. Synchronized mitochondria-tagged C9-pbGFP39b were analyzed by immunofluorescence microscopy at four hours after release from the metabolic block. Typical morphologies of cells in inter (a,f), prophase (b), metaphase (c,g), anaphase (d) and telophase (e,h) are shown at 606magnification. The red fluorescence identifies the cytosk proteins a-tubulin (a–e) and b-actin (f–h). The green fluorescence identifies mitochondria. The blue fluorescence reveals the stained nuclear DNA the To-Pro probe. doi:10.1371/journal.pone.0000107.g005 Figure 5. Morphological changes in the cellular mitochondrial network during mitosis. Synchronized mitochondri were analyzed by immunofluorescence microscopy at four hours after release from the metabolic block. Typical morpho (a,f), prophase (b), metaphase (c,g), anaphase (d) and telophase (e,h) are shown at 606magnification. The red fluorescen proteins a-tubulin (a–e) and b-actin (f–h). The green fluorescence identifies mitochondria. The blue fluorescence reveals t the To-Pro probe. doi:10.1371/journal.pone.0000107.g005 Figure 5. Biogenesis of Mitochondria [53] or delocalized synthesis of mtDNA [49] which might represent events of mtDNA turnover and/or repair of the nucleoid. deficiency [30] although such phenotype has been attributed to a defective import of b-F1-ATPase rather than to the activity of the 39UTR on translation. Consistent with this essential role of the 39UTR of the transcript in the synthesis of b-F1-ATPase our efforts to develop a mouse with a genetic deletion on the 39UTR of the b-F1-ATPase gene by homologous recombination (IngenKO, Australia) have resulted unsuccessful (data not shown). Consistent with the prominent role played by cardiolipin in translation of mitochondrial proteins and on the biogenesis of OXPHOS complexes ([54–56] and references therein) we observed that synthesis of the mitochondrial encoded COXI protein is fully accounted in S phase concurrently with the synthesis of cardiolipin and of the nuclear-encoded counterpart subunit COXIV. However, we observed that a fully developed DYm is not attained until G2/M (Fig. 2D) [57]. The assembly and oligomerization of the H+-ATP synthase has been shown to play a critical role in the folding of the inner membrane into cristae morphology [58–60]. Moreover, in yeast cells the activity of the ATPase has been shown to be strictly required for the maintenance of mitochondrial integrity and mtDNA [61]. It is thus reasonable to suggest that the synthesis of b-F1-ATPase, and perhaps of other nuclear-encoded OXPHOS components whose synthesis is driven at G2/M, could rate-limit the development of a functional organelle during cellular proliferation. The trans-acting factors of the 39UTR of b-mRNA that have been shown to control the translation of the mRNA during liver development [24] and in oncogenesis [25] have poly A binding activity [70]. Unfortunately, the molecular nature of these RNA binding proteins still remains elusive. However, we have recently observed that both a reduced environment and a low ATP/ADP ratio favor the binding of these proteins to its target [70] what results in translation masking of the mRNA [22,24,25]. A burst of mitochondrial respiration has been noted upon serum stimulation of quiescent mammalian cells [9]. However, progression through the cell cycle is stringently controlled by the regulation of the metabolic pathways involved in energy generation [10,11,71]. Biogenesis of Mitochondria Essentially, the ‘‘metabolic cycle’’ during cellular proliferation alternates between a first oxidative phase that is characterized by the biosynthesis of many cellular components (G1 phase) and is supported by the energy derived from mitochondrial activity followed by a reductive phase were the replication of DNA and the biosynthesis of mitochondria (S/G2/M phases) is supported by non-respiratory modes of energy generation [10,11,71]. The operation of the metabolic cycle in cells of mammals have received recent support after the observation that cyclin D1 represses mitochondrial function in vivo [13,14]. We therefore suggest that control of b-mRNA translation in the reductive phase that prevails at G2/M should have additional players that control the interactions of trans-acting factors of the 39UTR with its target to allow the translation of the mRNA in such unfavorable metabolic situation. Since the expression of b-F1-ATPase is down-regulated in most human cancers [38,72] contributing to tumor progression [38,39,73] we believe that such regulators are responsible for promoting deregulated b-F1-ATPase expression in the cancer cell. The regulation of the expression of nuclear and mitochondrial genes during the cell cycle has been described at both the level of transcription [15,62,63] and by changes in the half-life of the mRNAs [15,63–65]. However, the buildup of b-F1-ATPase during cellular proliferation occurs in the absence of changes in the cellular abundance of its mRNA consistent with the stringent translational control described for this transcript [21–25]. Moreover, the expression of a reporter driven from a chimeric mRNA containing the regulatory 39UTR of b-mRNA recapitu- lated the same pattern and mechanism of expression of the endogenous protein during cellular proliferation, providing the first indication that translation at G2/M is also required for the synthesis of an essential component of mitochondria, and supporting that cell-cycle regulated changes in the translational efficiency of some OXPHOS transcripts play a prominent role in the biogenesis of mitochondria. It is well established that cap-dependent translation is inhibited at mitosis as a result of multiple events that lead to the disruption of the eIF4F complex [66]. At this stage of the cycle cap- independent translation drives the synthesis of relevant cellular proteins from a set of internal ribosome entry site (IRES)- containing mRNAs [67–69]. Consistent with the synthesis of b-F1- ATPase at G2/M, the translation of b-mRNA has been shown to have a lesser dependence on eIF4E than other cellular mRNAs [32]. Biogenesis of Mitochondria Moreover, the 39UTR of b-mRNA acts as a translation enhancing sequence [24,33] that displays IRES-like activity in dicistronics constructs [32]. Therefore, an important conclusion resulting from this work is that the 39UTR-located IRES of b-mRNA is the target of cell cycle-dependent translational regulation. Finally, we presume that the rapid changes in mitochondrial morphology and dynamics that accompany mitosis might be of relevance for the appropriate segregation of the organelles and mtDNA into daughter cells during proliferation. We showed that fission of mitochondria is an early event of mitosis that might be triggered in response to the signaling cascades that accompany progression through the cell cycle. In fact, similar rapid fission events on the mitochondrial network are observed after treatment of the cells with an inhibitor of protein kinases [6]. Fission of the organelle is likely to be triggered by proteasomal degradation of mitofusins [74]. Functionally, fission of mitochondria assures a stochastic distribution of the organelles within the two daughter cells by a process that might be actively controlled and mediated by microtubules [75]. However, it has been reported that after mitochondrial fission 25–40% of the organelles lack mtDNA [76]. This situation could contribute to the asymmetric segregation of mtDNA into daughter cells explaining certain mtDNA depletion syndromes [47]. However, the fusion of mitochondria in late telophase, just before citokinesis, a process that is controlled by mitofusins and the development of DYm [77], is likely to ameliorate the possible unequal distribution of mtDNA during cellular proliferation. The mammalian b-mRNA was the first nuclear-encoded transcript of the mitochondria shown to be localized and attached to the outer mitochondrial membrane [26–28]. Localization/ translation of the mRNA requires two cis-acting elements respectively located in the ORF and in the 39UTR of the mRNA [29]. The cis-acting element located on the ORF exerts a negative control on mRNA translation ([24] and Santamaria and Cuezva, unpublished observation). For efficient translation of b-mRNA it is required the IRES-like translation enhancing activity of the 39UTR [24,32]. Such translation enhancing activity of the 39UTR of b-mRNA has also been observed in the 39UTRs of other transcripts involved in the OXPHOS system of mammals [33] and yeast [31] cells. DISCUSSION Morphological changes in the cellular mitochondrial network during mitosis. Synchronized mitochondria-tagged C9-pbGFP39b cells were analyzed by immunofluorescence microscopy at four hours after release from the metabolic block. Typical morphologies of cells in interphase (a,f), prophase (b), metaphase (c,g), anaphase (d) and telophase (e,h) are shown at 606magnification. The red fluorescence identifies the cytoskeletal proteins a-tubulin (a–e) and b-actin (f–h). The green fluorescence identifies mitochondria. The blue fluorescence reveals the stained nuclear DNA with the To-Pro probe. doi:10.1371/journal.pone.0000107.g005 December 2006 | Issue 1 | e107 PLoS ONE | www.plosone.org 7 7 Biogenesis of Mitochondria Cell cultures Rat liver clone 9 (C9) and BHK (Baby Hamster Kidney) cells were grown at 37uC in DMEM with 10% fetal calf serum (FCS) [6]. Liver C9 cells were arrested at the beginning of S phase by a double thymidine block. In brief, subconfluent cultures were treated with 2 mM thymidine for 10 h. Afterwards, the cells were washed twice with DMEM and then grown for 6 hours in drug-free medium supplemented with 24 mM 29-deoxycytidine. Cells were arrested for a second time with 2 mM thymidine for 10 h and after grown in DMEM containing 24 mM 29-deoxycytidine. Flow Cytometry Analysis For the determination of the cellular content of mitochondrial proteins in the different phases of the cell cycle, ,16106 C9 cells were washed in ice-cold staining buffer (1% BSA, 1% FCS and 0.01% sodium azide in PBS) and further incubated with primary monoclonal antibodies against b-F1-ATPase (Molecular Probes, 0.02 mg/ml), Hsp60 (Stressgene, 0.01 mg/ml), COXI and COXIV (Molecular Probes, both at 0.04 mg/ml) in staining buffer supplemented with 0.3% saponin. The cells were then washed in ice-cold PBS-saponin buffer and incubated in the dark for 20 min with goat anti-mouse IgG conjugated to Alexa 488. Finally, the cells were resuspended in PBS-staining buffer containing 5 mg/ml of propidium iodide (Sigma) and 100 mg/ml RNase A and further incubated for 20 min at 37uC. Mitochondrial membrane potential (DYm) and mitochondrial mass The fluorescent TMRM+ and NAO probes (Molecular Probes, Eugene, Oregon) were used to analyze DYm and mitochondrial mass by flow cytometry, respectively [6]. The cellular fluorescence intensity was measured using a FACScan flow cytometer (Becton- Dickinson, San Jose´, CA.). For each analysis 10,000 events were recorded. Biogenesis of Mitochondria In fact, ablation of the 39UTR in the yeast b-F1-ATPase gene resulted in cells with respiratory Overall, we have provided a comprehensive picture of the biogenesis of mammalian mitochondria during cellular prolifera- tion and illustrated the relevance of translational control by the 39UTR of an OXPHOS mRNA for the appropriate biogenesis of PLoS ONE | www.plosone.org December 2006 | Issue 1 | e107 8 Biogenesis of Mitochondria Biogenesis of Mitochondria the organelle during cell cycle progression. We hope that these findings will contribute to the understanding of certain human pathologies that impinge on organelle malfunction as a result of deregulated cellular proliferation. DNA constructs and cellular cloning The pJMI-b-F1 plasmid [24], that contains the full-length rat liver b-F1-ATPase cDNA, was digested with Ban I for obtaining the fragment encoding the mitochondrial targeting sequence of b-F1- ATPase. The resulting cDNA fragment was cloned in the Eco 47 III site of plasmids CDL-GFP-b-39UTR and CDL-GFP-Tfam- 39UTR [33], that express chimaeric RNAs of GFP with the 39- UTRs of b-F1-ATPase and Tfam mRNAs, respectively. The sequence of the resulting plasmids pb-GFP-b-39UTR and pb- GFP-Tfam-39UTR, both expressing the same fusion protein between the mitochondrial targeting sequence of b-F1-ATPase and GFP (pb-gfp), was verified by automated DNA sequencing. Cells were transfected at 60–80% confluence using 1 ml of FUGENE 6 (Boehringer Mannheim, Germany) and 0.5 mg of DNA/16105 cells in 1 ml of culture medium [33]. Positive cells expressing gfp in their mitochondria were selected by incubation with 40 mg/ml of geneticin (G-418) (GIBCO) and cloning cylinders (868 mm). Nucleic acids hybridizations For the determination of the cellular content of the expressed gfp in C9-pbGFP39b and C9-pbGFP39Tfam cells, ,16106 cells were fixed with 0.25% paraformaldehyde in PBS for 5 min. After, the cells were resuspended in 70% ice-cold ethanol, collected by centrifugation and finally incubated for 30 min at 37uC in PBS containing 100 mg/ml of RNase A and 20 mg/ml of propidium iodide. The mean fluorescence intensity of the cells was de- termined after excitation at a wavelength of 488nm on a FACScan. For computer analysis only the signals from single cells were considered (10,000 cells/assay). Data analysis was carried out using Flow Jo 6.4.1 for Mac. DNA and RNA were extracted from C9 cells and processed for hybridization of nucleic acids onto nylon membranes (GeneSc- reen) [33]. Membranes were incubated with [32P]dCTP-labeled DNA probes [25], exposed to X-ray films and analyzed by densitometry. Cytoplasmic RNA of sorted cells was extracted with RNeasy mini kit (Qiagen) following the manufacturer instructions. RNA quality was assessed previously to retro-transcription (RT) with High-Capacity cDNA Archive Kit (Applied Biosystems). qPCR was carried out on three different RT reactions. Oligonucleotides used for qPCR amplification were: 59-gcaat- tattccccatgaacg-39 and 59-gggacttaatcaacgcaagc-39 for 18S rRNA; 59-ggtatggaatcctgtggcatccatgaaa-39 and 59-gtgctaaaacgcagctcag- taacagtcc-39 for b-Actin mRNA and 59-aaagctggtgcccctgaag-39 and 59-ggagatggtcatagtcacctgct-39 for b-F1-ATPase mRNA. For qPCR, 5 ng of cDNA (template) and 0.5 mM of each primer together with Power Sybr Green PCR Master Mix (Applied Biosystems) were used following the protocol: 109695uC followed by 20–40 cycles of denaturation (150695uC) and annealing- elongation (19660uC) with fluorescence acquisition at 60uC. A melting curve (150695uC, 150660uC and 150695uC) with fluorescence acquisition at 60u to 95uC was included in each qPCR. The amplification efficiency of each primer was empirically determined and applied to the relative quantification of the data using qbase software (http://medgen.ugent.be/qbase/). For the separation of the cells in G0/G1, S and G2/M phases of the cycle, cells were stained for 10 minutes with 5 mg/ml of Hoescht 33342 added to the culture media. Cells (,56106 cells/ml) were resuspended in PBS containing 5 mM EDTA, 25 mM HEPES pH 7.0 and the cellular aggregates removed by filtration through 70 mm pore filters. Cells were sorted in a FACSCVantage SE (BD Biosciences, Erembodegen, Belgium) according to their DNA content and collected in 0.5 ml of FCS. The purity of each fraction was assessed in an aliquot of propidium iodide stained cells. Western-blots Cells were recovered from the plates by trypsin treatment, washed twice with PBS and boiled in loading buffer. Cellular proteins were fractionated on SDS-12% PAGE and then transferred onto PVDF membranes for immunoblot analysis [25]. The primary monoclonal antibodies used were: anti-GFP (Clontech, 1:1000), anti-a-tubulin (Sigma, 1:1000), anti-hsp60 (Stressgene SPA807, 1:3000), anti- COXIV (Molecular Probes, 1:100) and anti-cyclin B1 (Santa Cruz Biotechnology, 1:100). The primary polyclonal antibody used was anti-b-F1-ATPase (1:30000) [38]. Peroxidase-conjugated anti-mouse or anti-rabbit IgGs (Nordic Immunology, 1:3000) were used as secondary antibodies. The blots were developed using the ECLH reagent (Amersham Pharmacia Biotech, Little Chalfont, U.K.). microscopy py Cells were fixed in freshly prepared 4% paraformaldehyde in 0.1 M So¨rensen phosphate buffer, pH 7.2, for 2 h at 4uC. The free-aldehyde groups were quenched with 50 mM ammonium chloride in PBS for 60 min at 4uC. Samples were dehydrated in acetone and finally processed for embedding in Lowicryl K4M (Polysciences Europe, Eppelheim, Germany) [27]. Ultrathin sections were collected in collodion/carbon-coated nickel grids. Grids were incubated for 5 min with PBS containing 1% BSA and then incubated with anti-gfp (1:100). After three washes with PBS, grids were incubated for 45 min with goat anti-rabbit IgGs conjugated with 10 nm colloidal gold (British BioCell, Cardiff, UK). The grids were washed twice in PBS and distilled water, and air-dried. Counterstaining was performed with 2% aqueous uranyl acetate (6 min) and Reynolds lead citrate (45 s). Observation was performed in a Jeol 1010 electron microscope under 80 kV accelerating voltage. Figure S3 Changes in cellular morphology and on the mitochon- drial network during mitosis. Different time-frames of phase contrast (left panel) and fluorescence (right panel) images taken from the supporting video 1 illustrate the changes in cellular morphology and of the mitochondrial network during mitosis, respectively. a, interphase; b, prophase; c, prometaphase; d, metaphase; e, anaphase and f, telophase. Phase contrast images allowed the visualization of filopodia (b,c) and chromosomes (d,e,f). Found at: doi:10.1371/journal.pone.0000107.s003 (0.65 MB TIF) Figure S3 Changes in cellular morphology and on the mitochon- drial network during mitosis. Different time-frames of phase contrast (left panel) and fluorescence (right panel) images taken from the supporting video 1 illustrate the changes in cellular morphology and of the mitochondrial network during mitosis, respectively. a, interphase; b, prophase; c, prometaphase; d, metaphase; e, anaphase and f, telophase. Phase contrast images allowed the visualization of filopodia (b,c) and chromosomes (d,e,f). Found at: doi:10.1371/journal.pone.0000107.s003 (0.65 MB TIF) Video S1 Changes in cellular morphology and on the mito- chondrial network during mitosis. Phase contrast (left panel) and fluorescence (right panel) images from mitochondria-tagged gfp C9 cells were obtained every 3 min. The cellular shape changes dramatically during mitosis. In prophase/prometaphase, the plasma membrane promotes the protrusion of thin filopodia for cellular detachment triggering the clustering of mitochondria towards the cell nuclei. Fission of thread-like mitochondria is observed as a very early event of the initiation of mitosis (,12– 15 min) and is clearly finalized in metaphase. ACKNOWLEDGMENTS We thank Drs. Carlo M. Di Liegro (University of Palermo) and Fernando Martı´n (Parque Cientı´fico de Madrid) for his contributions in the initial development of this project. We thank Mrs. M. Chamorro for technical assistance. Online supplementary material For live imaging presented in the supplementary video, mito- chondria-tagged gfp C9 cells were grown on glass plates and live images were taken in a Cell Observer Zeiss equipment using a Zeiss Axiovert 200 inverted microscope equipped with a Cool- snap FX CCD camera (Roper Scientific). Phase contrast and fluorescence images were taken every 3 min for 20 frames (1 h) with a 406 objective and a gfp filter. The Metamorph 6.1r6 (Universal Imaging) program was used for image processing. 4. Vogelstein B, Kinzler KW (2004) Cancer genes and the pathways they control. Nat Med 10: 789–799. 5. Van den Bogert C, Muus P, Haanen C, Pennings A, Melis TE, et al. (1988) Mitochondrial biogenesis and mitochondrial activity during the progression of the cell cycle of human leukemic cells. Exp Cell Res 178: 143–153. SUPPORTING INFORMATION Figure S1 Analysis of the level of synchrony in cell cultures. C9 cells were treated as described to induce the arrest of the cell cycle at the G0/G1-S transition. After the release from the arrest, cells were grown and analyzed by flow cytometry at different time- points after DNA staining with propidium iodide. The panels illustrate the cell cycle profiles of representative experiments for control, arrested and 2-h and 4-h after the release from the arrest. The graph summarizes the analysis of cell distribution during the cell cycle of four independent synchronization experiments. Open squares, control non-arrested cells; closed circles, arrested cells and closed triangles cells at 4 h after release from the arrest. The results microscopy Some images representing individual frames of the movie are shown in Fig. S3. Found at: doi:10.1371/journal.pone.0000107.s004 (5.04 MB AVI) Author Contributions Conceived and designed the experiments: JC MM GS AO. Performed the experiments: MM GS AO. Analyzed the data: JC MM GS AO. Contributed reagents/materials/analysis tools: MM GS AO. Wrote the paper: JC. 1. Jones RG, Plas DR, Kubek S, Buzzai M, Mu J, et al. (2005) AMP-activated protein kinase induces a p53-dependent metabolic checkpoint. Mol Cell 18: 283–293. 2. Deshpande A, Sicinski P, Hinds PW (2005) Cyclins and cdks in development and cancer: a perspective. Oncogene 24: 2909–2915. 3. Hanahan D, Weinberg RA (2000) The hallmarks of cancer. Cell 100: 57–70. Immunofluorescence/confocal microscopy Fluorescence and indirect immunofluorescence microscopy was performed on mitochondria-tagged gfp C9 cells as recently described in detail [6]. The primary antibodies used were mouse December 2006 | Issue 1 | e107 PLoS ONE | www.plosone.org 9 Biogenesis of Mitochondria monoclonal anti-a-tubulin and anti-b-actin (both from Sigma, 1:200). The primary polyclonal antibody used was anti-b-F1- ATPase (1:1000) [38]. After three PBS rinses, the cells were incubated for 1 h in the dark with goat anti-mouse or goat anti- rabbit IgGs conjugated to Alexa 594 (Molecular Probes) at 1:1000 dilution. The nuclei were stained with ToPro3 (Molecular Probes). Cellular fluorescence was analyzed by confocal microscopy using a Biorad Radiance 2000 Zeiss Axiovert S100TV using the following excitation/emission wave lengths: green (498/516 nm), red (590/ 617 nm) and blue (642/661 nm). The fluorescence emission of gfp was also analyzed in a Leica DMIRB fluorescence microscope equipped with a gfp excitation filter (Leica, BP 470/40). shown are the means6S.E.M. * and {, P,0.01 when compared with control and arrested cells, respectively. Found at: doi:10.1371/journal.pone.0000107.s001 (0.17 MB TIF) Figure S2 Accumulation of mitochondrial proteins during the cell cycle. Determination of the expression level of mitochondrial proteins was carried out by flow cytometry after the staining of the cells with specific antibodies against b-F1-ATPase, Hsp60, COXI and COXIV. Irrelevant isotype-specific IgGs and antibodies against the T-cell receptor complex (TCRVb 8) were used as controls. The histograms in (a) show the overlay of the fluorescence intensity of each of the primary antibodies used (in blue) with the signal provided by the secondary antibody (in red) for the entire cell population analyzed. The histograms in (b) show the fluorescence intensity of the cells in G0/G1 (in red), S (in blue) and G2/M (in green) phases of the cell cycle. The mean fluorescence intensity for each cellular subpopulation is shown. Representative histograms are shown for each of the conditions tested. The results illustrate the lack of overlapping of the fluorescent signal of the mitochondrial markers with that of the secondary antibody or of the two controls (IgGs and TCRVb 8). Found at: doi:10.1371/journal.pone.0000107.s002 (0.17 MB TIF) 3. Hanahan D, Weinberg RA (2000) The hallmarks of cancer. Cell 100: 57–70. 2. Deshpande A, Sicinski P, Hinds PW (2005) Cyclins and cdks in development and cancer: a perspective. Oncogene 24: 2909–2915. 1. Jones RG, Plas DR, Kubek S, Buzzai M, Mu J, et al. (2005) AMP-activated protein kinase induces a p53-dependent metabolic checkpoint. Mol Cell 18: 283–293. 2. Deshpande A, Sicinski P, Hinds PW (2005) Cyclins and cdks in development and cancer: a perspective. Oncogene 24: 2909–2915. 1. Jones RG, Plas DR, Kubek S, Buzzai M, Mu J, et al. (2005) AMP-activated protein kinase induces a p53-dependent metabolic checkpoint. Mol Cell 18: 283–293. Biogenesis of Mitochondria J Biol Chem 275: 22387–22394. p y 27. Ricart J, Egea G, Izquierdo JM, San Martı´n C, Cuezva JM (1997) Subcellular structure containing mRNA for beta subunit of mitochondrial H+-ATP synthase in rat hepatocytes is translationally active. Biochem J 324: 635–643. 57. Sweet S, Singh G (1999) Changes in mitochondrial mass, membrane potential, and cellular adenosine triphosphate content during the cell cycle of human leukemic (HL-60) cells. J Cell Physiol 180: 91–96. 28. Lithgow T, Cuezva JM, Silver PA (1997) Highways for protein delivery to the mitochondria. Trends Biochem Sci 22: 110–113. 29. Ricart J, Izquierdo JM, Di Liegro CM, Cuezva JM (2002) The assembly of the ribonucleoprotein complex containing the mRNA of the b-subunit of the mitochondrial H+-ATP synthase requires the participation of two distal cis-acting elements and a complex set of cellular trans-acting proteins. Biochem J 365: 417–428. 58. Paumard P, Vaillier J, Coulary B, Schaeffer J, Soubannier V, et al. (2002) The ATP synthase is involved in generating mitochondrial cristae morphology. EMBO J 21: 221–230. 59. Minauro-Sanmiguel F, Wilkens S, Garcia JJ (2005) Structure of dimeric mitochondrial ATP synthase: novel F0 bridging features and the structural basis of mitochondrial cristae biogenesis. Proc Natl Acad Sci U S A 102: 12356–12358. 30. Margeot A, Blugeon C, Sylvestre J, Vialette S, Jacq C, et al. (2002) In Saccharomyces cerevisiae, ATP2 mRNA sorting to the vicinity of mitochondria is essential for respiratory function. EMBO J 21: 6893–904. 60. Lefebvre-Legendre L, Salin B, Schaeffer J, Brethes D, Dautant A, et al. (2005) Failure to assemble the alpha 3 beta 3 subcomplex of the ATP synthase leads to accumulation of the alpha and beta subunits within inclusion bodies and the loss of mitochondrial cristae in Saccharomyces cerevisiae. J Biol Chem 280: 18386–18392. 31. Sylvestre J, Margeot A, Jacq C, Dujardin G, Corral-Debrinski M (2003) The role of the 39 untranslated region in mRNA sorting to the vicinity of mitochondria is conserved from yeast to human cells. Mol Biol Cell 14: 3848–3856. conserved from yeast to human cells. Mol Biol Cell 14: 3848–3856 32. Izquierdo JM, Cuezva JM (2000) Internal-ribosome-entry-site functional activity of the 39-untranslated region of the mRNA for the beta subunit of mitochondrial H+-ATP synthase. Biochem J 346: 849–855. 61. Lefebvre-Legendre L, Balguerie A, Duvezin-Caubet S, Giraud MF, Slonimski PP, et al. (2003) F1-catalysed ATP hydrolysis is required for mitochondrial biogenesis in Saccharomyces cerevisiae growing under conditions where it cannot respire. Biogenesis of Mitochondria p 50. Posakony JW, England JM, Attardi G (1977) Mitochondrial growth and division during the cell cycle in HeLa cells. J Cell Biol 74: 468–491. 22. Luis AM, Izquierdo JM, Ostronoff LK, Salinas M, Santare´n JF, et al. (1993) Translational regulation of mitochondrial differentiation in neonatal rat liver. Specific increase in the translational efficiency of the nuclear-encoded mitochondrial beta-F1-ATPase mRNA. J Biol Chem 268: 1868–1875. 51. Radsak K, Schutz E (1978) Changes of mitochondrial DNA polymerase-gamma activity in synchronized mouse cell cultures. Eur J Biochem 89: 3–9. activity in synchronized mouse cell cultures. Eur J Biochem 89: 3–9. 52. Ruiz De Mena I, Lefai E, Garesse R, Kaguni LS (2000) Regulation of mitochondrial single-stranded DNA-binding protein gene expression links nuclear and mitochondrial DNA replication in drosophila. J Biol Chem 275: 13628–13636. 23. Izquierdo JM, Ricart J, Ostronoff LK, Egea G, Cuezva JM (1995) Changing patterns of transcriptional and post-transcriptional control of beta-F1-ATPase gene expression during mitochondrial biogenesis in liver. J Biol Chem 270: 10342–10350. 53. Davis AF, Clayton DA (1996) In situ localization of mitochondrial DNA replication in intact mammalian cells. J Cell Biol 135: 883–893. 24. Izquierdo JM, Cuezva JM (1997) Control of the translational efficiency of beta- F1-ATPase mRNA depends on the regulation of a protein that binds the 39 untranslated region of the mRNA. Mol Cell Biol 17: 5255–5268. 54. Ostrander DB, Zhang M, Mileykovskaya E, Rho M, Dowhan W (2001) Lack of mitochondrial anionic phospholipids causes an inhibition of translation of protein components of the electron transport chain. A yeast genetic model system for the study of anionic phospholipid function in mitochondria. J Biol Chem 276: 25262–25272. 25. Lo´pez de Heredia M, Izquierdo JM, Cuezva JM (2000) A conserved mechanism for controlling the translation of beta-F1-ATPase mRNA between the fetal liver and cancer cells. J Biol Chem 275: 7430–7437. 55. Zhang M, Mileykovskaya E, Dowhan W (2002) Gluing the respiratory chain together. Cardiolipin is required for supercomplex formation in the inner mitochondrial membrane. J Biol Chem 277: 43553–43556. 26. Egea G, Izquierdo JM, Ricart J, San Martı´n C, Cuezva JM (1997) mRNA encoding the beta-subunit of the mitochondrial F1-ATPase complex is a localized mRNA in rat hepatocytes. Biochem J 322: 557–565. 56. Jiang F, Ryan MT, Schlame M, Zhao M, Gu Z, et al. (2000) Absence of cardiolipin in the crd1 null mutant results in decreased mitochondrial membrane potential and reduced mitochondrial function. Biogenesis of Mitochondria 6. Santamaria G, Martinez-Diez M, Fabregat I, Cuezva JM (2006) Efficient execution of cell death in non-glycolytic cells requires the generation of ROS controlled by the activity of mitochondrial H+-ATP synthase. Carcinogenesis 27: 925–935. 35. Cuezva JM, Ostronoff LK, Ricart J, Lo´pez de Heredia M, Di Liegro CM, et al. (1997) Mitochondrial biogenesis in the liver during development and oncogenesis. J Bioenerg Biomembr 29: 365–377. g J g 36. Attardi G, Schatz G (1988) Biogenesis of mitochondria. Annu Rev Cell Biol 4: 289–333. 7. Mandal S, Guptan P, Owusu-Ansah E, Banerjee U (2005) Mitochondrial regulation of cell cycle progression during development as revealed by the tenured mutation in Drosophila. Dev Cell 9: 843–854. 37. Garesse R, Vallejo CG (2001) Animal mitochondrial biogenesis and function: a regulatory cross-talk between two genomes. Gene 263: 1–16. 8. Hardie DG (2005) New roles for the LKB1RAMPK pathway. Curr Opin Cell Biol 17: 167–173. 38. Cuezva JM, Krajewska M, de Heredia ML, Krajewski S, Santamaria G, et al. (2002) The bioenergetic signature of cancer: a marker of tumor progression. Cancer Res 62: 6674–6681. 9. Herzig RP, Scacco S, Scarpulla RC (2000) Sequential serum-dependent activation of CREB and NRF-1 leads to enhanced mitochondrial respiration through the induction of cytochrome c. J Biol Chem 275: 13134–13141. 39. Isidoro A, Casado E, Redondo A, Acebo P, Espinosa E, et al. (2005) Breast carcinomas fulfill the Warburg hypothesis and provide metabolic markers of cancer prognosis. Carcinogenesis 26: 2095–2104. g y J 10. Reinke H, Gatfield D (2006) Genome-wide oscillation of transcription in yeast. Trends Biochem Sci 31: 189–191. p g g 40. Garber K (2006) Energy deregulation: licensing tumors to grow. Science 312: 1158–1159. 11. Klevecz RR, Bolen J, Forrest G, Murray DB (2004) A genomewide oscillation in transcription gates DNA replication and cell cycle. Proc Natl Acad Sci U S A 101: 1200–1205. 41. Green DR, Chipuk JE (2006) p53 and metabolism: Inside the TIGAR. Cell 126: 30–32. 12. Tu BP, Kudlicki A, Rowicka M, McKnight SL (2005) Logic of the yeast metabolic cycle: temporal compartmentalization of cellular processes. Science 310: 1152–1158. 42. Nunnari J, Marshall WF, Straight A, Murray A, Sedat JW, et al. (1997) Mitochondrial transmission during mating in Saccharomyces cerevisiae is determined by mitochondrial fusion and fission and the intramitochondrial segregation of mitochondrial DNA. Mol Biol Cell 8: 1233–1242. 13. Sakamaki T, Casimiro MC, Ju X, Quong AA, Katiyar S, et al. Biogenesis of Mitochondria (2006) Cyclin d1 determines mitochondrial function in vivo. Mol Cell Biol 26: 5449–5469. 43. Yaffe MP (1999) The machinery of mitochondrial inheritance and behavior. Science 283: 1493–1497. 14. Wang C, Li Z, Lu Y, Du R, Katiyar S, et al. (2006) Cyclin D1 repression of nuclear respiratory factor 1 integrates nuclear DNA synthesis and mitochondrial function. Proc Natl Acad Sci U S A 103: 11567–11572. 44. Frank S, Gaume B, Bergmann-Leitner ES, Leitner WW, Robert EG, et al. (2001) The role of dynamin-related protein 1, a mediator of mitochondrial fission, in apoptosis. Dev Cell 1: 515–525. 15. Scarpulla RC (2002) Transcriptional activators and coactivators in the nuclear control of mitochondrial function in mammalian cells. Gene 286: 81–89. 45. Szabadkai G, Simoni AM, Chami M, Wieckowski MR, Youle RJ, et al. (2004) Drp-1-dependent division of the mitochondrial network blocks intraorganellar Ca2+ waves and protects against Ca2+-mediated apoptosis. Mol Cell 16: 59–68. 16. Wallace DC (2005) A mitochondrial paradigm of metabolic and degenerative diseases, aging, and cancer: a dawn for evolutionary medicine. Annu Rev Genet 39: 359–407. 46. Rojo G, Chamorro M, Salas ML, Vinuela E, Cuezva JM, et al. (1998) Migration of mitochondria to viral assembly sites in African swine fever virus-infected cells. J Virol 72: 7583–7588. 17. Trifunovic A, Wredenberg A, Falkenberg M, Spelbrink JN, Rovio AT, et al. (2004) Premature ageing in mice expressing defective mitochondrial DNA polymerase. Nature 429: 417–423. 47. Okamoto K, Shaw JM (2005) Mitochondrial morphology and dynamics in yeast and multicellular eukaryotes. Annu Rev Genet 39: 503–536. p y 18. Capaldi RA, Aggeler R (2002) Mechanism of the F(1)F(0)-type ATP synthase, a biological rotary motor. Trends Biochem Sci 27: 154–160. 48. Bogenhagen D, Clayton DA (1977) Mouse L cell mitochondrial DNA molecules are selected randomly for replication throughout the cell cycle. Cell 11: 719–727. 19. Boyer PD (1997) The ATP synthase. A splendid molecular machine. Annu Rev Biochem 66: 717–749. 49. Magnusson J, Orth M, Lestienne P, Taanman JW (2003) Replication of mitochondrial DNA occurs throughout the mitochondria of cultured human cells. Exp Cell Res 289: 133–142. 20. Abrahams JP, Leslie AG, Lutter R, Walker JE (1994) Structure at 2.8 A resolution of F1-ATPase from bovine heart mitochondria. Nature 370: 621–628. 21. Tvrdik P, Kuzela S, Houstek J (1992) Low translational efficiency of the F1- ATPase beta-subunit mRNA largely accounts for the decreased ATPase content in brown adipose tissue mitochondria. FEBS Lett 313: 23–26. REFERENCES PLoS ONE | www.plosone.org December 2006 | Issue 1 | e107 December 2006 | Issue 1 | e107 10 Biogenesis of Mitochondria Biogenesis of Mitochondria 63. Luciakova K, Li R, Nelson BD (1992) Differential regulation of the transcript levels of some nuclear- encoded and mitochondrial-encoded respiratory-chain components in response to growth activation. Eur J Biochem 207: 253–257. ATPase mRNA by adenine nucleotides and the redox state. Arch Biochem Biophys 433: 481–486. p y 71. Tu BP, McKnight SL (2006) Metabolic cycles as an underlying basis of biological oscillations. Nat Rev Mol Cell Biol 7: 696–701. p components in response to growth activation. Eur J Biochem 207: 25 64. Lunardi J, Attardi G (1991) Differential regulation of expression of the multiple ADP/ATP translocase genes in human cells. J Biol Chem 266: 16534–16540. 72. Isidoro A, Martinez M, Fernandez PL, Ortega AD, Santamaria G, et al. (2004) Alteration of the bioenergetic phenotype of mitochondria is a hallmark of breast, gastric, lung and oesophageal cancer. Biochem J 378: 17–20. 65. Kindy MS, Brown KE, Sonenshein GE (1991) Regulation of expression of the growth-state-related genes 2F1 and 2A9 during entry of quiescent smooth muscle cells into the cell cycle. J Cell Biochem 46: 345–350. gastric, lung and oesophageal cancer. Biochem J 378: 17–20. 73. Cuezva JM, Chen G, Alonso AM, Isidoro A, Misek DE, et al. (2004) The bioenergetic signature of lung adenocarcinomas is a molecular marker of cancer diagnosis and prognosis. Carcinogenesis 25: 1157–1163. g g g y muscle cells into the cell cycle. J Cell Biochem 46: 345–350. y J 66. Pyronnet S, Sonenberg N (2001) Cell-cycle-dependent translational control. Curr Opin Genet Dev 11: 13–18. 66. Pyronnet S, Sonenberg N (2001) Cell-cycle-dependen Curr Opin Genet Dev 11: 13–18. 66. Pyronnet S, Sonenberg N (2001) Curr Opin Genet Dev 11: 13–18. y g ( ) Curr Opin Genet Dev 11: 13–18. 74. Neutzner A, Youle RJ (2005) Instability of the mitofusin Fzo1 regulates mitochondrial morphology during the mating response of the yeast Saccharo- myces cerevisiae. J Biol Chem 280: 18598–18603. 67. Cornelis S, Bruynooghe Y, Denecker G, Van Huffel S, Tinton S, et al. (2000) Identification and characterization of a novel cell cycle-regulated internal ribosome entry site. Mol Cell 5: 597–605. 75. Nishida K, Yagisawa F, Kuroiwa H, Nagata T, Kuroiwa T (2005) Cell cycle- regulated, microtubule-independent organelle division in Cyanidioschyzon merolae. Mol Biol Cell 16: 2493–2502. 68. Pyronnet S, Pradayrol L, Sonenberg N (2000) A cell cycle-dependent internal ribosome entry site. Mol Cell 5: 607–616. 69. Biogenesis of Mitochondria Mol Microbiol 47: 1329–1339. y J 33. Di Liegro CM, Bellafiore M, Izquierdo JM, Rantanen A, Cuezva JM (2000) 39- Untranslated regions of oxidative phosphorylation mRNAs function in vivo as enhancers of translation. Biochem J 352: 109–115. 62. Kim H, You S, Kim IJ, Farris J, Foster LK, et al. (2001) Increased mitochondrial-encoded gene transcription in immortal DF-1 cells. Exp Cell Res 265: 339–347. 34. Valcarce C, Navarrete RM, Encabo P, Loeches E, Satru´stegui J, et al. (1988) Postnatal development of rat liver mitochondrial functions. The roles of protein synthesis and of adenine nucleotides. J Biol Chem 263: 7767–7775. PLoS ONE | www.plosone.org December 2006 | Issue 1 | e107 December 2006 | Issue 1 | e107 11 Biogenesis of Mitochondria Biogenesis of Mitochondria Qin X, Sarnow P (2004) Preferential translation of internal ribosome entry site- containing mRNAs during the mitotic cycle in mammalian cells. J Biol Chem 279: 13721–13728. 76. Legros F, Malka F, Frachon P, Lombes A, Rojo M (2004) Organization and dynamics of human mitochondrial DNA. J Cell Sci 117: 2653–2662. y J 77. Legros F, Lombes A, Frachon P, Rojo M (2002) Mitochondrial fusion in human cells is efficient, requires the inner membrane potential, and is mediated by mitofusins. Mol Biol Cell 13: 4343–4354. 70. Izquierdo JM, Cuezva JM (2005) Epigenetic regulation of the binding activity of translation inhibitory proteins that bind the 39 untranslated region of beta-F1- PLoS ONE | www.plosone.org December 2006 | Issue 1 | e107 12
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Insights into the Mechanism of Homeoviscous Adaptation to Low Temperature in Branched-Chain Fatty Acid-Containing Bacteria through Modeling FabH Kinetics from the Foodborne Pathogen Listeria monocytogenes
Frontiers in microbiology
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Keywords: FabH, psychrotolerance, fatty acid biosynthesis, membrane fluidity, kinetic modeling, listeriosis, branched-chain carboxylic acids HYPOTHESIS AND THEORY published: 07 September 2016 doi: 10.3389/fmicb.2016.01386 Reviewed by: Hélène Simonin, Agrosup Dijon, France Haihong Wang, South China Agricultural University, China Diego De Mendoza, Universidad Nacional de Rosario, Argentina Reviewed by: Hélène Simonin, Agrosup Dijon, France Haihong Wang, South China Agricultural University, China Diego De Mendoza, Universidad Nacional de Rosario, Argentina *Correspondence: Craig Gatto cgatto@ilstu.edu Specialty section: This article was submitted to Food Microbiology, a section of the journal Frontiers in Microbiology Received: 12 May 2016 Accepted: 22 August 2016 Published: 07 September 2016 Citation: Saunders LP, Sen S, Wilkinson BJ and Gatto C (2016) Insights into the Mechanism of Homeoviscous Adaptation to Low Temperature in Branched-Chain Fatty Acid-Containing Bacteria through Modeling FabH Kinetics from the Foodborne Pathogen Listeria monocytogenes. Front. Microbiol. 7:1386. doi: 10.3389/fmicb.2016.01386 Specialty section: This article was submitted to Food Microbiology, a section of the journal Frontiers in Microbiology Received: 12 May 2016 Accepted: 22 August 2016 Published: 07 September 2016 Edited by: Christophe Nguyen-The, Institut National de la Recherche Agronomique, France The psychrotolerant foodborne pathogen Listeria monocytogenes withstands the stress of low temperatures and can proliferate in refrigerated food. Bacteria adapt to growth at low temperatures by increasing the production of fatty acids that increase membrane fluidity. The mechanism of homeoviscous increases in unsaturated fatty acid amounts in bacteria that predominantly contain straight-chain fatty acids is relatively well understood. By contrast the analogous mechanism in branched-chain fatty acid-containing bacteria, such as L. monocytogenes, is poorly understood. L. monocytogenes grows at low temperatures by altering its membrane composition to increase membrane fluidity, primarily by decreasing the length of fatty acid chains and increasing the anteiso to iso fatty acid ratio. FabH, the initiator of fatty acid biosynthesis, has been identified as the primary determinant of membrane fatty acid composition, but the extent of this effect has not been quantified. In this study, previously determined FabH steady-state parameters and substrate concentrations were used to calculate expected fatty acid compositions at 30◦C and 10◦C. FabH substrates 2-methylbutyryl-CoA, isobutyryl-CoA, and isovaleryl-CoA produce the primary fatty acids in L. monocytogenes, i.e., anteiso-odd, iso-even, and iso-odd fatty acids, respectively. In vivo concentrations of CoA derivatives were measured, but not all were resolved completely. In this case, estimates were calculated from overall fatty acid composition and FabH steady-state parameters. These relative substrate concentrations were used to calculate the expected fatty acid compositions at 10◦C. Our model predicted a higher level of anteiso lipids at 10◦C than was observed, indicative of an additional step beyond FabH influencing fatty acid composition at low temperatures. The potential for control of low temperature growth by feeding compounds that result in the production of butyryl-CoA, the precursor of SCFAs that rigidify the membrane and are incompatible with growth at low temperatures, is recognized. INTRODUCTION Such outbreaks are very expensive, the costs of a 2008 outbreak in Canada being estimated at $242 million Canadian dollars (Thomas et al., 2015). The mechanisms involved in changes in fatty acid composition resulting in increased membrane fluidity are very different depending on whether the fatty acids of the bacterium are a mixture of straight-chain saturated fatty acids (SCFAs) and straight-chain unsaturated fatty acids (SCUFAs), or are predominately BCFAs. Species that contain primarily SCFAs and SCUFAs, which include many Gram-negative and some Gram-positive species, predominately alter fluidity via chain length and the ratio of SCFA to SCUFA (Zhang and Rock, 2008). In contrast, species with a high proportion of BCFAs, which are predominately Gram-positive species, alter chain length and the ratio of anteiso to iso fatty acids (Suutari and Laakso, 1994). Our work is involved in attempting to further understand the mechanisms underlying changes in fatty acid composition in L. monocytogenes that allow growth at low temperatures that may have applicability to BCFA-containing bacteria in general. A critical aspect of L. monocytogenes in its role as a foodborne pathogen is its ability to grow at refrigeration temperatures and below to temperatures as low as −0.1◦C (Walker et al., 1990). We have been interested in understanding the mechanisms underlying how L. monocytogenes copes with the stress of low temperatures over several years. A critical aspect of the psychrotolerance of the organism is to adjust its membrane fatty acid composition to maintain membrane fluidity. The fatty acids of L. monocytogenes are composed almost entirely of branched- chain fatty acids (BCFAs), with the three major fatty acids being the odd-numbered anteiso fatty acids anteiso C15:0 and anteiso C17:0, and odd-numbered iso fatty acid iso C15:0 (Annous et al., 1997; Nichols et al., 2002; Zhu et al., 2005). When the bacterium is grown at low temperatures the content of anteiso C15:0 rises markedly through a combination of reduction in fatty acid chain length and branching switching from iso to anteiso fatty acids (Annous et al., 1997; Nichols et al., 2002; Zhu et al., 2005). Anteiso fatty acids, which have a methyl branch on the antepenultimate carbon atom, disrupt the close packing of y y g g The mechanism by which SCFA- and SCUFA-containing bacteria increase the proportion of SCUFAs is understood in considerable detail in Escherichia coli. The major fatty acids in E. Citation: Saunders LP, Sen S, Wilkinson BJ and Gatto C (2016) Insights into the Mechanism of Homeoviscous Adaptation to Low Temperature in Branched-Chain Fatty Acid-Containing Bacteria through Modeling FabH Kinetics from the Foodborne Pathogen Listeria monocytogenes. September 2016 | Volume 7 | Article 1386 Frontiers in Microbiology | www.frontiersin.org 1 Modeling of L. monocytogenes FabH Enzyme Kinetics Saunders et al. INTRODUCTION fatty acyl chains (Willecke and Pardee, 1971; Poger et al., 2014), resulting in increased membrane fluidity (Edgcomb et al., 2000), in what is termed homeoviscous adaptation (Sinensky, 1974). The foodborne Gram-positive bacterial pathogen Listeria monocytogenes is the cause of the potentially serious disease listeriosis that is characterized by a high fatality rate. Detection of food contamination with L. monocytogenes continues to lead to large scale food product recalls. Recently, there has been a multistate outbreak of listeriosis linked to frozen vegetables (http://www.cdc.gov/listeria/outbreaks) that has resulted in an extensive recall of 358 consumer frozen vegetable and fruit products sold under 42 separate brands. Such outbreaks are very expensive, the costs of a 2008 outbreak in Canada being estimated at $242 million Canadian dollars (Thomas et al., 2015). A critical aspect of L. monocytogenes in its role as a foodborne pathogen is its ability to grow at refrigeration temperatures and below to temperatures as low as −0.1◦C (Walker et al., 1990). We have been interested in understanding the mechanisms underlying how L. monocytogenes copes with the stress of low temperatures over several years. A critical aspect of the psychrotolerance of the organism is to adjust its membrane fatty acid composition to maintain membrane fluidity. The fatty acids of L. monocytogenes are composed almost entirely of branched- chain fatty acids (BCFAs), with the three major fatty acids being the odd-numbered anteiso fatty acids anteiso C15:0 and anteiso C17:0, and odd-numbered iso fatty acid iso C15:0 (Annous et al., 1997; Nichols et al., 2002; Zhu et al., 2005). When the bacterium is grown at low temperatures the content of anteiso C15:0 rises markedly through a combination of reduction in fatty acid chain length and branching switching from iso to anteiso fatty acids (Annous et al., 1997; Nichols et al., 2002; Zhu et al., 2005). Anteiso fatty acids, which have a methyl branch on the antepenultimate carbon atom, disrupt the close packing of The foodborne Gram-positive bacterial pathogen Listeria monocytogenes is the cause of the potentially serious disease listeriosis that is characterized by a high fatality rate. Detection of food contamination with L. monocytogenes continues to lead to large scale food product recalls. Recently, there has been a multistate outbreak of listeriosis linked to frozen vegetables (http://www.cdc.gov/listeria/outbreaks) that has resulted in an extensive recall of 358 consumer frozen vegetable and fruit products sold under 42 separate brands. Data Modeling Data were modeled according to the Briggs-Haldane mechanism for all substrates simultaneously using Scheme 1: ES1 k1 ↑↓k−1 k2 −→E + P1 E + S1 + S2 + S3 k−5 ↑↓k5 k3⇄ k−3 ES2 k4 −→E + P2 Scheme 1 ES3 k6 −→E + P3 in which FabH is E; S and P refer to the different substrates and products, respectively, and k1/k−1, k3/k−3, k5/k−5 refer to the forward and reverse rates associated with the KM. The values k2, k4, and k6 are the kcat rate constants for chemical conversion of the various substrates to their corresponding products. As the concentration of malonyl-acyl carrier protein, i.e., the second substrate, was constant for all experiments (Singh et al., 2009), it was incorporated into the KM and kcat values, reducing the kinetic mechanism to the Briggs-Haldane equation. Reaction rates were determined from Singh et al. (2009) with a reverse catalytic rate of zero. Rates for the initial equilibrium were modeled from the KM by setting the forward reaction rate to a constant for all substrates and varying the reverse reaction rate to account for KM value. Changes to the forward reaction rate did not significantly affect results (Figure 2B). Not all acyl-CoA substrates could be separated via HPLC in Singh et al. (2009); thus, temperatures were compared both under equal substrate conditions and under the values reported for in vivo conditions. The first condensation reaction in fatty acid biosynthesis is catalyzed by FabH, which plays a major role in determining the fatty acids produced by bacteria. The major fatty acids in L. monocytogenes, which contains almost exclusively BCFAs, are anteiso odd, iso odd, and iso even fatty acids, which are biosynthesized from 2-methylbutyryl-CoA (2MB-CoA), isovaleryl-CoA (IV-CoA), and isobutyryl-CoA (IB-CoA), respectively, produced through the activities of branched-chain amino acid transaminase and branched-chain α–keto acid dehydrogenase on the branched-chain amino acids isoleucine, leucine and valine, respectively. Interestingly, a non-native FabH will switch an organism’s fatty acid composition to reflect that of the organism from which it originated (Choi et al., 2000; Li et al., 2005), showing that FabH substrate specificity plays a major role in fatty acid composition. INTRODUCTION coli grown at 37◦C are C16:0 (45%), C16:119 (35%), and C18:1111 (18%) (Cronan and Rock, 2013). As growth temperature drops the percentage of C16:0 drops and C18:119 increases, thereby increasing the proportion of unsaturated fatty acids and membrane fluidity. The 1 position of E. coli phospholipids is primarily occupied by C16:0 and C18:1111 and the C2 position by C16:119. At lower growth temperatures, C18:119 amounts increase at position 1 and C16:0 decreases (Figure 1). SCUFAs are produced by the activities of FabA and FabB. FabA dehydrates 3-hydroxyacyl-ACP to FIGURE 1 | Possible structure of phsophatidyl glycerol from (A) predominantly SCFA/SCUFA-containing bacteria and (B) predominantly BCFA-containing bacteria with particular reference to growth at low temperatures. The fatty acids esterified at the 1- and 2-carbon positions are C18:1111 and C16:119, respectively in (A) and anteiso C15:0 in both positions in (B). FIGURE 1 | Possible structure of phsophatidyl glycerol from (A) predominantly SCFA/SCUFA-containing bacteria and (B) predominantly BCFA-containing bacteria with particular reference to growth at low temperatures. The fatty acids esterified at the 1- and 2-carbon positions are C18:1111 and C16:119, respectively in (A) and anteiso C15:0 in both positions in (B). September 2016 | Volume 7 | Article 1386 Frontiers in Microbiology | www.frontiersin.org Frontiers in Microbiology | www.frontiersin.org 2 Modeling of L. monocytogenes FabH Enzyme Kinetics Saunders et al. trans-2-enoyl-ACP during fatty acid elongation and at the 10-carbon stage trans-2-deconyl-ACP is isomerized to cis-3- decenoyl-ACP by FabA (Heath and Rock, 1996). cis-3-decenoyl- ACP is elongated by FabB rather than the FabF condensing enzyme to form C16:1-ACP, which is then elongated to 18:1- ACP prior to its incorporation into phospholipids by FabF. FabF is subject to thermal regulation and is responsible for increased C18:1111 in cells grown at low temperatures (de Mendoza et al., 1983). however, endogenous substrate concentrations measured directly from L. monocytogenes show that all three branched-chain acyl Co-A derivatives are present under physiological conditions. Thus, competition exists between these substrates and therefore the in vivo kinetics must differ from the in vitro determined kinetic values obtained from individual substrates. In this paper, we extend the analysis in Singh et al. (2009) via calculations and simulations to estimate the in vivo kinetic parameters and preferences of LmFabH. These in vivo substrate preferences can then be compared to the overall fatty acid composition of L. monocytogenes, which has been measured under a variety of conditions. INTRODUCTION Homeoviscous adaptation in BCFA-containing bacteria appears to revolve around increasing the content of fatty acid anteiso C15:0 as exemplified by L. monocytogenes (Annous et al., 1997), Bacillus subtilis (Klein et al., 1999) and other BCFA- containing bacteria (Suutari and Laakso, 1994). Unsaturated fatty acids do not play a major role in homeoviscous lipid adaptation in BCFA-containing bacteria, which lack the fabA and fabB genes required for their synthesis (Lu et al., 2004). A cold-inducible system that introduces double bonds into existing phospholipids in B. subtilis is probably of minor significance (Cybulski et al., 2002) in long term cold adaptation. In BCFA-containing bacteria including S. aureus, anteiso C15:0 preferentially occupies position 2 in phospholipid molecules and anteiso C17:0 position 1 (Kaneda, 1991; Parsons et al., 2011). Fatty acid anteiso C15:0 rises to 65% or more of the total fatty acids in low temperature grown L. monocytogenes (Annous et al., 1997). It is likely that some of the anteiso C17:0 fatty acid on position 1 is replaced by anteiso C15:0 (Figure 1). Anteiso C15:0 then plays a similar role to the SCUFAs in fluidizing the membrane at low temperatures. We have much less knowledge of the mechanisms involved in increasing the proportion of anteiso fatty acids than SCUFAs. Frontiers in Microbiology | www.frontiersin.org RESULTS FabH can utilize both straight- (acetyl-CoA; Ac-CoA) and branched- (IV-CoA, 2MB-CoA, and IB-CoA) chain substrates; however, LmFabH greatly prefers branched-chain substrates. The specific activity of FabH with Ac-CoA is greater than 10-fold lower than with the three branched substrates (Singh et al., 2009). Simulations based on Scheme 1 show that negligible amounts of Ac-CoA are utilized when all four substrates are present in equal concentrations (Figure 2). The presence of Ac-CoA therefore has nearly no impact on FabH substrate utilization and was not analyzed in subsequent simulations. FabH’s low affinity for Ac-CoA agrees well with the native fatty acid composition of L. monocytogenes, as there are negligible amounts of SCFAs in its membrane. As Ac-CoA is present at relatively high concentrations (18.0 µM at 30◦C), lack of this precursor is not preventing L. monocytogenes from making SCFAs. Rather, our data suggest that FabH substrate selectivity results in the lack of SCFAs. FabH can utilize both straight- (acetyl-CoA; Ac-CoA) and branched- (IV-CoA, 2MB-CoA, and IB-CoA) chain substrates; however, LmFabH greatly prefers branched-chain substrates. The specific activity of FabH with Ac-CoA is greater than 10-fold lower than with the three branched substrates (Singh et al., 2009). Simulations based on Scheme 1 show that negligible amounts of Ac-CoA are utilized when all four substrates are present in equal concentrations (Figure 2). The presence of Ac-CoA therefore has nearly no impact on FabH substrate utilization and was not analyzed in subsequent simulations. FabH’s low affinity for Ac-CoA agrees well with the native fatty acid composition of L. monocytogenes, as there are negligible amounts of SCFAs in its membrane. As Ac-CoA is present at relatively high concentrations (18.0 µM at 30◦C), lack of this precursor is not preventing L. monocytogenes from making SCFAs. Rather, our data suggest that FabH substrate selectivity results in the lack of SCFAs. Simulations show FabH prefers 2MB-CoA as a substrate at both 30◦C and 10◦C with equal substrate concentrations of 2MB- CoA, IV-CoA, IB-CoA, and Ac-CoA (Figure 2, Table 1). 2MB- CoA produces anteiso fatty acids, the predominant membrane fatty acids in L. monocytogenes. The next best substrates only produce ∼75% (IV-CoA) and ∼50% (IB-CoA) of the 2MB-CoA product at 30◦C and 10◦C, respectively (Figure 2). Interestingly, IV-CoA is the second best utilized substrate at 30◦C, but is not preferred over IB-CoA at 10◦C. RESULTS Forward rates for the pre-kcat equilibrium varied from 0.1 s−1 to 10 s−1 and are color coded from light to dark. LmFabH concentration was 1 µM. Ac-CoA substrate is not shown as it is off scale for the duration of the experiment; its product is gray (at 0 µM). (B) Rates of substrate hydrolysis and product formation with equal substrate concentrations (10 µM) at 10◦C. IB-CoA is orange and its product purple; IV-CoA is black and its product red; 2MB-CoA is green and its product blue. Forward rates for the pre-kcat equilibrium were set to 10 s−1. LmFabH concentration was 1 µM. FIGURE 2 | Rates of FabH activity with branched substrates at 30◦C In the simplest model for the determination of fatty acid composition, only FabH contributes to fatty acid composition and that composition reflects the substrate concentrations and FabH’s enzymatic properties. This hypothesis is described by Scheme 1. To determine the validity of this hypothesis, substrate concentrations are needed for FabH’s three main substrates. While Singh et al. (2009) measured endogenous substrate concentrations in vivo, not all substrates were resolved. For instance, butyryl-CoA (B-CoA) could not be separated from IB-CoA, and 2MB-CoA could not be separated from IV- CoA. Substrate concentrations were therefore varied within the range of values measured in Singh et al. (2009) to see if the data from the substrate concentrations, enzymatic parameters, and fatty acid composition could be described by the model (Scheme 1). As SCFAs (i.e., the products from B- CoA) are present only in low amounts in L. monocytogenes, B-CoA is not expected to contribute significantly to the fatty acid profile. Thus, the in vivo amount of IB-CoA can be estimated directly from the membrane fatty acid composition. and using the Briggs-Haldane rather than the Michaelis-Menten constants. Data Modeling We have examined the kinetics of LmFabH at high and low temperatures and have provided evidence that the enzyme shows an increased preference for 2MB-CoA at 10◦C compared to 30◦C, which likely contributes to increased production of anteiso fatty acids at low temperatures (Singh et al., 2009). Composite steady-state parameters were calculated from the steady-state parameters of the individual substrates in Singh et al. (2009) using the equation: VS1 [E] = Vmax[S1] [S1] + KM1(1 + [S2] KM2 + [S3] KM3 ) (1) (1) in which VS1 is the velocity of hydrolysis of substrate 1 and S and KM correspond to the concentration and measured KM of the species denoted in the subscript, respectively. This equation is modified from the equation for two competitive inhibitors (Segel, 1975) by replacing the inhibitors with substrates 2 and 3 Singh et al. (2009) measured LmFabH kinetics and substrate concentrations at 30◦C and 10◦C to determine the role of FabH in the changes in relative fatty acid proportions at low temperatures in L. monocytogenes. These kinetic data describe the mechanism of FabH when only one substrate is present; September 2016 | Volume 7 | Article 1386 3 Modeling of L. monocytogenes FabH Enzyme Kinetics Saunders et al. FIGURE 2 | Rates of FabH activity with branched substrates at 30◦C and 10◦C. (A) Rates of substrate hydrolysis and product formation with equal substrate concentrations (10 µM) at 30◦C. IB-CoA is orange and its product purple; IV-CoA is black and its product red; 2MB-CoA is green and its product blue. Forward rates for the pre-kcat equilibrium varied from 0.1 s−1 to 10 s−1 and are color coded from light to dark. LmFabH concentration was 1 µM. Ac-CoA substrate is not shown as it is off scale for the duration of the experiment; its product is gray (at 0 µM). (B) Rates of substrate hydrolysis and product formation with equal substrate concentrations (10 µM) at 10◦C. IB-CoA is orange and its product purple; IV-CoA is black and its product red; 2MB-CoA is green and its product blue. Forward rates for the pre-kcat equilibrium were set to 10 s−1. LmFabH concentration was 1 µM. RESULTS As IV-CoA is converted into iso- odd fatty acids, this modeled decrease in preference likely reveals the reason for observed lower proportion of these fatty acids at low temperatures (Annous et al., 1997; Nichols et al., 2002; Zhu et al., 2005). FIGURE 2 | Rates of FabH activity with branched substrates at 30◦C and 10◦C. (A) Rates of substrate hydrolysis and product formation with equal substrate concentrations (10 µM) at 30◦C. IB-CoA is orange and its product purple; IV-CoA is black and its product red; 2MB-CoA is green and its product blue. Forward rates for the pre-kcat equilibrium varied from 0.1 s−1 to 10 s−1 and are color coded from light to dark. LmFabH concentration was 1 µM. Ac-CoA substrate is not shown as it is off scale for the duration of the experiment; its product is gray (at 0 µM). (B) Rates of substrate hydrolysis and product formation with equal substrate concentrations (10 µM) at 10◦C. IB-CoA is orange and its product purple; IV-CoA is black and its product red; 2MB-CoA is green and its product blue. Forward rates for the pre-kcat equilibrium were set to 10 s−1. LmFabH concentration was 1 µM. FIGURE 2 | Rates of FabH activity with branched substrates at 30◦C and 10◦C. (A) Rates of substrate hydrolysis and product formation with equal substrate concentrations (10 µM) at 30◦C. IB-CoA is orange and its product purple; IV-CoA is black and its product red; 2MB-CoA is green and its product blue. Forward rates for the pre-kcat equilibrium varied from 0.1 s−1 to 10 s−1 and are color coded from light to dark. LmFabH concentration was 1 µM. Ac-CoA substrate is not shown as it is off scale for the duration of the experiment; its product is gray (at 0 µM). (B) Rates of substrate hydrolysis and product formation with equal substrate concentrations (10 µM) at 10◦C. IB-CoA is orange and its product purple; IV-CoA is black and its product red; 2MB-CoA is green and its product blue. Forward rates for the pre-kcat equilibrium were set to 10 s−1. LmFabH concentration was 1 µM. FIGURE 2 | Rates of FabH activity with branched substrates at 30◦C and 10◦C. (A) Rates of substrate hydrolysis and product formation with equal substrate concentrations (10 µM) at 30◦C. IB-CoA is orange and its product purple; IV-CoA is black and its product red; 2MB-CoA is green and its product blue. Determination of Fatty Acid Composition L. monocytogenes strain 10403S was grown in Brain Heart Infusion (BHI) media at 30◦C, under conditions identical to those in Sen et al. (2015). L. monocytogenes was grown concurrently in unsupplemented BHI and BHI supplemented with increasing amounts of the lipid precursors 2-methylbutyrate (2MB), isovalerate (IV), isobutyrate (IB), and butyrate (B), that act as precursors for biosynthesis of odd-numbered anteiso, odd- numbered iso, even-numbered iso BCFAs and even-numbered SCFAs, respectively (Julotok et al., 2010). L. monocytogenes cultures were harvested in exponential phase and the fatty acid compositions were determined as described by Zhu et al. (2005). Figure 3 shows a model depicting the expected relative concentrations of fatty acids for varying IV-CoA and 2MB-CoA concentrations. As IB-CoA concentration is not changing, the amount of iso-even fatty acids produced changes much less than either anteiso- or iso-odd fatty acids. An IB-CoA Frontiers in Microbiology | www.frontiersin.org September 2016 | Volume 7 | Article 1386 4 Modeling of L. monocytogenes FabH Enzyme Kinetics Saunders et al. TABLE 1 | Normalized amount of product produced at various temperatures and substrate concentrations by FabH activity. Temperature (◦C) Substrate Independent calculations Dependent calculations Dependent calculations (Singh et al., 2009) (%) (3 substrate model) (%) (2 substrate model) (%) 30 IV-CoA 29.8 33.3 n/a 2MB-CoA 53.2 51.4 80.5 IB-CoA 17.0 15.3 19.6 10 IV-CoA 14.3 9.0 n/a 2MB-CoA 57.1 63.7 71.1 IB-CoA 28.6 27.4 28.9 Calculations were done using Equation (1), with no substrate inhibition, equal amounts of 2MB-CoA and IV-CoA (i.e., 2.85 µM 2MB-CoA and 2.85 µM IV-CoA at 30◦C), and the extreme case in which only 2MB-CoA is present with no IV-CoA. | Normalized amount of product produced at various temperatures and substrate concentrations by FabH activity. FIGURE 3 | Percent product produced by FabH with varying concentrations of IV-CoA and 2MB-CoA. (A) Fraction of product based on concentrations and kinetic parameters at 30◦C. Product amounts are calculated from Equation (1). Total IV-CoA and 2MB-CoA concentration is 5.7 µM, thus the [2MB-CoA] = 5.7µM – [IV-CoA]. IB-CoA concentration is 0.9 µM. (B) Fraction of product based on concentrations and kinetic parameters at 10◦C. Product amounts are calculated from Equation (1). Total IV and 2MB concentration is 0.8 µM, thus the [2MB-CoA] = 0.8µM – [IV-CoA]. IB-CoA concentration is 0.149 µM. concentration of 0.9 µM would result in the observed amount of ∼5% even-numbered iso-fatty acids at 30◦C (Figure 3A). Determination of Fatty Acid Composition At 10◦C, an equivalent ratio of IB-CoA:B-CoA was used to model lipid composition which resulted in slightly higher iso-even fatty acid concentrations of ∼10% (Figure 3B). This is a higher concentration of iso-even fatty acids than is observed experimentally (Annous et al., 1997; Nichols et al., 2002; Zhu et al., 2005). Therefore, while the model can describe experimental data obtained at 30◦C, the model cannot describe the fatty acid composition experimentally observed at both temperatures without changes in the relative substrate concentrations. Specifically, iso-even fatty acid levels have never been reported as high as 10% as predicted by the model at 10◦C (Figure 3B); thus, the easiest resolution to this discrepancy is that in vivo an additional step regulates either the supply of acyl-CoA precursors to FabH or the incorporation of iso-even fatty acids into the lipid bilayer. y As for the 2MB-CoA and IV-CoA concentrations, in BHI media at 30◦C, the proportions of anteiso and iso odd fatty acids are 81.5 and 13.8%, respectively, giving a product ratio of 5.9 (Zhu et al., 2005). Modeling at 30◦C suggests this product ratio of fatty acids occurs at 1.4 µM IV-CoA and 4.3 µM 2MB-CoA, a substrate ratio of 3.0. Thus, there is good agreement between the model and measured fatty acid content at 30◦C. If changes in FabH’s substrate preferences alone are responsible for the differences in the lipid profile, then the 10◦C fatty acid ratio (i.e., 7.5) should correspond to the same substrate ratio (3.0). However, at 10◦C a substrate ratio of 3.0 (i.e., 0.2 µM IV-CoA, 0.6 µM 2MB-CoA) produces a calculated fatty acid product ratio of 19.5, which greatly exceeds what is observed (Annous et al., 1997; Nichols et al., 2002; Zhu et al., 2005). This dichotomy between the model and the actual fatty acid composition measured suggests that FabH, although critical in determining final membrane fatty acid content, may not be the sole regulatory step involved. The simplest explanation for the substantial overestimated anteiso fatty acid content predicted by the model is that an additional regulatory step alters either the concentration of acyl-CoA precursors, or a later regulatory step regulates the amount of anteiso fatty acids that get incorporated into the FIGURE 3 | Percent product produced by FabH with varying concentrations of IV-CoA and 2MB-CoA. (A) Fraction of product based on concentrations and kinetic parameters at 30◦C. Product amounts are calculated from Equation (1). DISCUSSION B-CoA appears to be a better FabH substrate than Ac-CoA, as more of it is incorporated into the membrane fatty acids than predicted from Ac-CoA y g In order to model fatty acid composition with additional substrates in the growth media, one must have an estimate of the amount of available cellular substrate. Millimolar quantities of fatty acid precursors are usually added to produce fatty acid composition changes (Julotok et al., 2010). This implies that only low levels of fatty acid precursors are converted into fatty acids, consistent with our finding that only ∼0.2% of exogenously supplemented precursors was available to FabH. It is not yet known whether this limitation is due to slow precursor uptake by the cell or another slow enzymatic step in producing the CoA derivatives of the various precursors. All four exogenous precursors appear to be equally available to FabH, as the percentage of available substrate was the same for all four substrates. This percentage would be expected to change if the substrate concentrations were tightly regulated, so it appears that there is little regulation of substrate concentrations at 30◦C. FIGURE 4 | Membrane fatty acid composition changes upon fatty acid precursor addition. 0, 25, 75, 250, and 500 uM of 2MB (green), IV (black), IB (red), and B (blue) were added to L. monocytogenes cultures and the fatty acid compositions were determined. The increase in the fatty acid precursor’s fatty acid product was measured and modeled using FabH substrate preferences (triangles, lighter colors). g An increase in anteiso fatty acids at the expense of iso- odd fatty acids at lower temperatures is clearly shown in our model; however, the extent of replacement predicted by the model exceeds that seen in vivo. Our model assumes no change in the relative amounts of IV-CoA and 2MB- CoA under different temperature conditions; however, the concentrations of IV-CoA and 2MB-CoA were not separable in Singh et al. (2009). Thus, the deviation from the model may reflect alterations in relative substrate amounts, which would be compatible both with the data and our model. Alternatively, an upstream step from FabH that leads to the production of the CoA substrates may also be temperature dependent. The IV-CoA pool must increase from ∼1/3 at 30◦C to ∼2/3 of the IV-CoA / 2MB-CoA pool at 10◦C to fit the ratio seen in the fatty acid composition data. DISCUSSION To further investigate the effects of FabH, L. monocytogenes was cultured in medium supplemented with fatty acid precursors and the effects on fatty acid composition were observed. Concentrations of fatty acid precursors were small enough that no effect on bacterial growth was observed (data not shown). The amount of exogenously added short-chain carboxylic acid made available to FabH as the corresponding CoA derivative is uncertain which hampers our calculations. Thus, we necessarily assume that the partitioning of the substrate is a consistent percentage of the exogenously added precursor which becomes available to FabH. This percentage of available substrate was added to the model as an additional variable in our calculations (i.e., 2MB + x%∗[exogenous 2MB]) and simulations of fatty acid composition were run using this equation. FabH plays an integral role in determining membrane fatty acid composition in L. monocytogenes, as it does for other bacteria (Choi et al., 2000; Cronan, 2003). In this report, we modeled the activity of FabH at both 30◦C and 10◦C and found a qualitative explanation for the fatty acid profile change that occurs in this organism between high and low temperatures. This provides confidence that FabH is one of the enzymes that promotes growth at low temperatures for L. monocytogenes via increases in membrane fluidity. However, our model does not quantitatively mimic the exact distribution fractions of fatty acids at both temperatures, suggesting that another enzyme combines with FabH to produce the final membrane composition in L. monocytogenes. The effect of precursor addition (i.e., 2MB, IV, IB, and B) on the fatty acid composition of L. monocytogenes was measured, and the amount of available substrate was calculated from fatty acid composition. Based on our model, 0.2% of the exogenously added substrate is available to FabH under steady- state conditions, and substrate identity does not affect substrate availability (Figure 4). The increase in the associated product was measured for each fatty acid precursor added, and the data are well described by the model (Figure 4). As the kinetic parameters for B were not measured in Singh et al. (2009), the Ac-CoA parameters were instead used in the fitting. Determination of Fatty Acid Composition Total IV-CoA and 2MB-CoA concentration is 5.7 µM, thus the [2MB-CoA] = 5.7µM – [IV-CoA]. IB-CoA concentration is 0.9 µM. (B) Fraction of product based on concentrations and kinetic parameters at 10◦C. Product amounts are calculated from Equation (1). Total IV and 2MB concentration is 0.8 µM, thus the [2MB-CoA] = 0.8µM – [IV-CoA]. IB-CoA concentration is 0.149 µM. FIGURE 3 | Percent product produced by FabH with varying concentrations of IV-CoA and 2MB-CoA. (A) Fraction of product based on concentrations and kinetic parameters at 30◦C. Product amounts are calculated from Equation (1). Total IV-CoA and 2MB-CoA concentration is 5.7 µM, thus the [2MB-CoA] = 5.7µM – [IV-CoA]. IB-CoA concentration is 0.9 µM. (B) Fraction of product based on concentrations and kinetic parameters at 10◦C. Product amounts are calculated from Equation (1). Total IV and 2MB concentration is 0.8 µM, thus the [2MB-CoA] = 0.8µM – [IV-CoA]. IB-CoA concentration is 0.149 µM. FIGURE 3 | Percent product produced by FabH with varying concentrations of IV-CoA and 2MB-CoA. (A) Fraction of product based on concentrations and kinetic parameters at 30◦C. Product amounts are calculated from Equation (1). Total IV-CoA and 2MB-CoA concentration is 5.7 µM, thus the [2MB-CoA] = 5.7µM – [IV-CoA]. IB-CoA concentration is 0.9 µM. (B) Fraction of product based on concentrations and kinetic parameters at 10◦C. Product amounts are calculated from Equation (1). Total IV and 2MB concentration is 0.8 µM, thus the [2MB-CoA] = 0.8µM – [IV-CoA]. IB-CoA concentration is 0.149 µM. September 2016 | Volume 7 | Article 1386 Frontiers in Microbiology | www.frontiersin.org 5 Modeling of L. monocytogenes FabH Enzyme Kinetics Saunders et al. kinetic parameters. 2MB-CoA, IV-CoA, and IB-CoA percentages are well described by FabH preference. kinetic parameters. 2MB-CoA, IV-CoA, and IB-CoA percentages are well described by FabH preference. lipid bilayer. As with IB-CoA, the model describes the data at 30◦C, but cannot describe the data at both temperatures, and thus another step must be involved in determining fatty acid composition. REFERENCES acid composition of Listeria monocytogenes at 37 and 10◦C. Appl. Environ. Microbiol. 76, 1423–1432. doi: 10.1128/AEM.01592-09 acid composition of Listeria monocytogenes at 37 and 10◦C. Appl. Environ. Microbiol. 76, 1423–1432. doi: 10.1128/AEM.01592-09 Annous, B. A., Becker, L. A., Bayles, D. O., Labeda, D. P., and Wilkinson, B. J. (1997). Critical role of anteiso-C15:0 fatty acid in the growth of Listeria monocytogenes at low temperatures. Appl. Environ. Microbiol. 63, 3887–3894. Kaneda, T. (1991). Iso- and anteiso-fatty acids in bacteria: biosynthesis, function, and taxonomic significance. Microbiol. Rev. 55, 288–302. Klein, W., Weber, M. H. W., and Marahiel, M. A. (1999). Cold shock response of Bacillus subtilis: isoleucine-dependent switch in the fatty acid branching pattern for membrane adaptation to low temperature. J. Bacteriol. 181, 5341–5349. Choi, K. H., Heath, R. J., and Rock, C. O. (2000). β-ketoacyl-acyl carrier protein synthase III (FabH) is a determining factor in branched-chain fatty acid biosynthesis. J. Bacteriol. 182, 365–370. doi: 10.1128/JB.182.2.365-370.2000 Cronan, J. E. (2003). Bacterial membrane lipids: where do we stand? Annu. Rev. Microbiol. 57, 203–224. doi: 10.1146/annurev.micro.57.030502.090851 Li, Y., Florova, G., and Reynolds, K. A. (2005). Alteration of the fatty acid profile of Streptomyces coelicolor by replacement of the initiation enzyme 3-ketoacyl Li, Y., Florova, G., and Reynolds, K. A. (2005). Alteration of the fatty acid profile of Streptomyces coelicolor by replacement of the initiation enzyme 3-ketoacyl acyl carrier protein synthase III (FabH). J. Bacteriol. 187, 3795–3799. doi: 10.1128/JB.187.11.3795-3799.2005 Cronan, J. E., and Rock, C. O. (2013). Biosynthesis of membrane lipids. EcoSal Plus 3, 1–44. doi: 10.1128/ecosalplus.3.6.4 acyl carrier protein synthase III (FabH). J. Bacteriol. 187, 3795–3799. doi: 10.1128/JB.187.11.3795-3799.2005 Lu, Y.-J., Zhang, Y.-M., and Rock, C. O. (2004). Product diversity and regulation of type II fatty acid synthases. Biochem. Cell Biol. 82, 145–155. doi: 10.1139/ o03-076 Cybulski, L. E., Albanesi, D., Mansilla, M. C., Altabe, S., Aguilar, P. S., and de Mendoza, D. (2002). Mechanism of membrane fluidity optimization: isothermal control of the Bacillus subtilis acyl-lipid desaturase. Mol. Microbiol. 45, 1379–1388. doi: 10.1046/j.1365-2958.2002.03103.x Nichols, D. S., Presser, K. A., Olley, J., Ross, T., and McMeekin, T. A. (2002). Variation of branched-chain fatty acids marks the normal physiological range for growth in Listeria monocytogenes. Appl. Environ. Microbiol. 68, 2809–2813. doi: 10.1128/AEM.68.6.2809-2813.2002 de Mendoza, D., Klages Ulrich, A., and Cronan, J. E. (1983). Thermal regulation of membrane fluidity in Escherichia coli. Effects of overproduction of beta- ketoacyl-acyl carrier protein synthase I. J. Biol. Chem. 258, 2098–2101. FUNDING This work was supported by grant R15-AI099977 from the National Institute of Health to BW and R15-GM61583 to CG. This work was supported by grant R15-AI099977 from the National Institute of Health to BW and R15-GM61583 to CG. DISCUSSION This requires a significant change in an earlier step in fatty acid production, and thus an additional enzyme that helps control fatty acid composition in L. monocytogenes. If substrate concentrations are not temperature dependent, a downstream step from FabH could selectively prefer iso-odd fatty acids at lower temperatures to regulate a possible overproduction of anteiso fatty acid precursors by the enzyme. The lower than predicted FIGURE 4 | Membrane fatty acid composition changes upon fatty acid precursor addition. 0, 25, 75, 250, and 500 uM of 2MB (green), IV (black), IB (red), and B (blue) were added to L. monocytogenes cultures and the fatty acid compositions were determined. The increase in the fatty acid precursor’s fatty acid product was measured and modeled using FabH substrate preferences (triangles, lighter colors). September 2016 | Volume 7 | Article 1386 Frontiers in Microbiology | www.frontiersin.org 6 Modeling of L. monocytogenes FabH Enzyme Kinetics Saunders et al. incorporation of anteiso fatty acids could be an adaptation for a rapid response to temperature change; when the temperature decreases, e.g., the cells need additional anteiso fatty acids, and FabH’s preference for 2MB-CoA could be modulated via a feedback mechanism once the appropriate level of anteiso fatty acids are synthesized. regulated. FabH substrate preference plays a significant role in L. monocytogenes survival at low temperatures, and methods can be devised to exploit this step to control L. monocytogenes growth. Similarly, identifying the enzymatic processes in addition to FabH that control the levels of lipid bilayer BCFA content may also reveal potential targets for controlling growth of this organism at low temperatures. For example, fatty acid composition can be modified by manipulation of precursor concentrations (Julotok et al., 2010) and encouraging the biosynthesis of SCFAs that are derived from B-CoA would decrease the growth of L. monocytogenes at low temperatures. CONCLUSION No other studies have measured endogenous FabH substrate concentrations, so there is no basis for comparison to determine how well FabH substrate preference in other organisms compares to final fatty acid composition. In this study, fatty acid composition was calculated from FabH substrate preferences and composition, and the differences between this model and the actual fatty acid compositions of L. monocytogenes were compared. The data presented here suggest that FabH is the primary controller of fatty acid composition in L. monocytogenes. FabH preference can be used to predict fatty acid composition at 30◦C with and without added substrates, and qualitatively predict temperature induced changes in fatty acid composition. However, an additional control step beyond FabH alone is required to adequately predict fatty acid composition changes at lower temperatures. AUTHOR CONTRIBUTIONS CG: Designed experiments, evaluated and interpreted data, contributed extensively to the writing of the manuscript, supported the science with grant funds. BW: Designed experiments, evaluated and interpreted data, contributed extensively to the writing of the manuscript, supported the science with grant funds. LS: Developed the kinetic model, ran simulations, evaluated and interpreted data, contributed extensively to the writing of the manuscript. SS: Grew strains of L. monocytogenes, carried out fatty acid analyses, helped with data interpretation. Further in the type II fatty acid biosynthesis pathway is the rate limiting enzyme FabI (enoyl-ACP reductase). Schiebel et al. (2012) reported the ratio of specificity constants of FabI from S. aureus (a BCFA-containing gram-positive bacterium) was 1:24:1, straight: iso: anteiso. This is a potential candidate for a further control point that could be temperature REFERENCES Parsons, J. B., Frank, M. W., Subramanian, C., Saenkham, P., and Rock, C. O. (2011). Metabolic basis for the differential susceptibility of Gram-positive pathogens to fatty acid synthesis inhibitors. Proc. Natl. Acad. Sci. U.S.A. 108, 15378–15383. doi: 10.1073/pnas.1109208108 Edgcomb, M. R., Sirimanne, S., Wilkinson, B. J., Drouin, P., and Morse, R. D. (2000). Electron paramagnetic resonance studies of the membrane fluidity of the foodborne pathogenic psychrotroph Listeria monocytogenes. Biochim. Biophys. Acta 1463, 31–42. doi: 10.1016/S0005-2736(99)00179-0 Poger, D., Caron, B., and Mark, A. (2014). Effect of methyl-branched fatty acids on the structure of lipid bilayers. J. Phys. Chem. B. 118, 13838–13848. doi: 10.1021/jp503910r Heath, R. J., and Rock, C. O. (1996). Regulation of fatty acid elongation and initiation by acyl-acyl carrier protein in Escherichia coli. J. Biol. Chem. 271, 1833–1836. doi: 10.1074/jbc.271.44.27795 Julotok, M., Singh, A. K., Gatto, C., and Wilkinson, B. J. (2010). Influence of fatty acid precursors, including food preservatives, on the growth and fatty Schiebel, J., Chang, A., Lu, H., Baxter, M. V., Tonge, P. J., and Kisker, C. (2012). Staphylococcus aureus FabI: inhibition, substrate recognition, and September 2016 | Volume 7 | Article 1386 Frontiers in Microbiology | www.frontiersin.org 7 Modeling of L. monocytogenes FabH Enzyme Kinetics Saunders et al. Walker, S. J., Archer, P., and Banks, J. G. (1990). Growth of Listeria monocytogenes at refrigeration temperatures. J. Appl. Bacteriol. 68, 157–162. doi: 10.1111/j.1365-2672.1990.tb02561.x potential implications for in vivo essentiality. Cell Struct. 20, 802–813. doi: 10.1016/j.str.2012.03.013 potential implications for in vivo essentiality. Cell Struct. 20, 802–813. doi: 10.1016/j.str.2012.03.013 j Segel, I. H. (1975). Enzyme Kinetics: Behavior and Analysis of Rapid Equilibrium and Steady-State Enzyme Systems. New York, NY: Wiley-Interscience. Willecke, K., and Pardee, A. B. (1971). Fatty acid-requiring mutant of Bacillus subtilis defective in branched chain alpha-keto acid dehydrogenase. J. Biol. Chem. 246, 5264–5272. Sen, S., Sirobhushanam, S., Hantak, M. P., Lawrence, P., Brenna, J. T., Gatto, C., et al. (2015). Short branched-chain C6 carboxylic acids result in increased growth, novel ‘unnatural’ fatty acids and increased membrane fluidity in a Listeria monocytogenes branched-chain fatty acid-deficient mutant. Biochim. Biophys. Acta 1851, 1406–1415. doi: 10.1016/j.bbalip.2015. 07.006 Zhang, Y. M., and Rock, C. O. (2008). Membrane lipid homeostasis in bacteria. Nat. Rev. Microbiol. 6, 222–233. doi: 10.1038/nrmicro1839 Zhu, K., Bayles, D. O., Xiong, A., Jayaswal, R. K., and Wilkinson, B. J. (2005). Frontiers in Microbiology | www.frontiersin.org September 2016 | Volume 7 | Article 1386 REFERENCES Precursor and temperature modulation of fatty acid composition and growth of Listeria monocytogenes cold-sensitive mutants with transposon-interrupted branched-chain alpha-keto acid dehydrogenase. Microbiology 151, 615–623. doi: 10.1099/mic.0.27634-0 Sinensky, M. (1974). Homeoviscous adaptation—a homeostatic process that regulates the viscosity of membrane lipids in Escherichia coli. Proc. Natl. Acad. Sci. U.S.A. 71, 522–525. doi: 10.1073/pnas.71.2.522 Singh, A. K., Zhang, Y.-M., Zhu, K., Subramanian, C., Li, Z., Jayaswal, R. K., et al. (2009). FabH selectivity for anteiso branched-chain fatty acid precursors in low temperature adaptation in Listeria monocytogenes. FEMS Microbiol. Lett. 301, 188–192. doi: 10.1111/j.1574-6968.2009.01814.x Conflict of Interest Statement: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest. Suutari, M., and Laakso, S. (1994). Microbial fatty acids and thermal adaptation. Crit. Rev. Microbiol. 20, 285–328. doi: 10.3109/104084194091 13560 Copyright © 2016 Saunders, Sen, Wilkinson and Gatto. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. Thomas, M. K., Vriezen, R., Farber, J. M., Currie, A., Schlech, W., and Fazil, A. (2015). Economic cost of a Listeria monocytogenes outbreak in Canada, 2008. Foodborne Pathog. Dis. 12, 966–971. doi: 10.1089/fpd.20 15.1965 September 2016 | Volume 7 | Article 1386 Frontiers in Microbiology | www.frontiersin.org 8
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Theory of Mind in Bipolar Disorder, with Comparison to the Impairments Observed in Schizophrenia
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Review published: 18 January 2016 doi: 10.3389/fpsyt.2015.00188 Review published: 18 January 2016 doi: 10.3389/fpsyt.2015.00188 Theory of Mind in Bipolar Disorder, with Comparison to the impairments Observed in Schizophrenia Rachel L. C. Mitchell* and Allan H. Young Institute of Psychiatry, Psychology & Neuroscience, King’s College London, London, UK Our ability to make sense of information on the potential intentions and dispositions of others is of paramount importance for understanding their communicative intent, and for judging what an appropriate reaction might be. Thus, anything that impinges on this ability has the potential to cause significant social impairment, and compromise an indi- vidual’s level of functioning. Both bipolar disorder and schizophrenia are known to feature theory of mind impairment. We conducted a theoretical review to determine the extent and types of theory of mind impairment in bipolar disorder, and evaluate their relationship to medication and symptoms. We also considered possible mediatory mechanisms, and set out to discover what else could be learnt about the impairment in bipolar disorder by comparison to the profile of impairment in schizophrenia. The literature established that in bipolar disorder (i) some form of theory of mind impairment has been observed in all mood states, including euthymia, (ii) the form of theory of mind assessed and task used to make the assessment influence the impairment observed, and (iii) there might be some relationship to cognitive impairment, although a relationship to standard clinical variables was harder to establish. What also became clear in the literature on bipolar disorder itself was the possible relationship of theory of mind impairment to history of psychotic symptoms. Direct comparative studies, including patients with schizophrenia, were thus examined, and provided several important directions for future research on the bases of impairment in bipolar disorder. Particularly prominent was the issue of whether theory of mind impairment could be considered a candidate endophenotype for the psychoses, although current evidence suggests that this may be premature. The differences in impairment across schizophrenia and bipolar disorder may, however, have genuine differential effects on social functioning and the likely success of remediation. Edited by: Tamsyn Elizabeth Van Rheenen, University of Melbourne, Australia Reviewed by: Peter Kirsch, Zentralinstitut für Seelische Gesundheit, Germany Casimiro Cabrera Abreu, Queen’s University and Providence Care, Canada *Correspondence: Rachel L. C. Mitchell rachel.mitchell@kcl.ac.uk *Correspondence: Rachel L. C. Mitchell rachel.mitchell@kcl.ac.uk Specialty section: This article was submitted to Affective Disorders and Psychosomatic Research, a section of the journal Frontiers in Psychiatry Received: 23 October 2015 Accepted: 27 December 2015 Published: 18 January 2016 Citation: Mitchell RLC and Young AH (2016) Theory of Mind in Bipolar Disorder, with Comparison to the Impairments Observed in Schizophrenia. Front. Psychiatry 6:188. doi: 10.3389/fpsyt.2015.00188 Keywords: bipolar disorder, psychoses, schizophrenia, social cognition, theory of mind “Social cognition” describes the mental operations that underlie social interactions, including perceiving, interpreting, and generating responses to the intentions, dispositions, and behaviors of others (1). “Theory of mind” is a crucial facet of social cognition, and can be defined as the ability to infer and predict the intentions, thoughts, desires, intuitions, behavioral reactions, plans, and beliefs of other people (1–3), through an awareness that others have a mind with mental states, information, and motivations that may differ from one’s own (4, 5). Here, cognitive theory of mind refers to the ability to make inferences about other people’s beliefs, whereas affective theory of mind refers to the ability to make inferences about other people’s feelings. A prominent feature of bipolar disorder is its significant negative impact on work-related, interpersonal, and leisure activities (6). As “Social cognition” describes the mental operations that underlie social interactions, including perceiving, interpreting, and generating responses to the intentions, dispositions, and behaviors of others (1). “Theory of mind” is a crucial facet of social cognition, and can be defined as the ability to infer and predict the intentions, thoughts, desires, intuitions, behavioral reactions, plans, and beliefs of other people (1–3), through an awareness that others have a mind with mental states, information, and motivations that may differ from one’s own (4, 5). Here, cognitive theory of mind refers to the ability to make inferences about other people’s beliefs, whereas affective theory of mind refers to the ability to make inferences about other people’s feelings. A prominent feature of bipolar disorder is its significant negative impact on work-related, interpersonal, and leisure activities (6). As Edited by: Tamsyn Elizabeth Van Rheenen, University of Melbourne, Australia Edited by: Tamsyn Elizabeth Van Rheenen, University of Melbourne, Australia Edited by: Tamsyn Elizabeth Van Rheenen, University of Melbourne, Australia Citation: Mitchell RLC and Young AH (2016) Theory of Mind in Bipolar Disorder, with Comparison to the Impairments Observed in Schizophrenia. Front. Psychiatry 6:188. doi: 10.3389/fpsyt.2015.00188 January 2016  |  Volume 6  |  Article 188 Frontiers in Psychiatry  |  www.frontiersin.org 1 Bipolar Disorder – Theory of Mind Mitchell and Young theory of mind is so central to human life, any impairment of this cognitive capacity can only be detrimental to social functioning (7). The initial aim of this review is to further characterize the socio-cognitive profiles of patients with bipolar disorder by con- ducting a critical review of theory of mind in this patient group. This aim will be achieved via the presentation and synthesis of currently available published evidence. In recent years, a number of reviews have either had to present broad overviews of theory of mind and other related social skills (8–12), or evaluate evidence from a range of related diagnostic groups (13, 14). However, the recent surge of publications focused on theory of mind in bipolar disorder allows us to now present a more focused synopsis. In order to collate this evidence, a systematic search of the literature was conducted using the PsychINFO and Medline databases, covering the period from 1975 up to September 2015. The search terms used in examining these databases were [bipolar AND (disorder OR depression)] OR (mania OR manic) OR (euthymia OR euthymic) OR [(mood OR affective) AND disorder] AND [(“theory of mind”) OR mindedness OR mentalizing OR mental- izing]. Review articles touching on social cognition in bipolar disorder were also examined to check for studies not captured by the search above, through backward citation searching. After reviewing the literature gathered by these means, the following areas of discussion were identified.i first tackle this question by reviewing studies of bipolar disorder, which have compared the profile of impairment of theory of mind in bipolar patients who do and do not present with psychosis. We then move on to assessing studies that have explicitly contrasted theory of mind in schizophrenia vs. those in bipolar disorder. It is clear that theory of mind impairments in schizophrenia appear more severe than those in bipolar disorder. Reasons for the pos- sible difference in size of impairment is examined, including both symptom and neurocognitive mediators. Citation: Close examination of the similarities and differences in theory of mind is important because of the impact of these deficits on social functioning, which in turn, might help explain the differences in outcome between schizophrenia and bipolar disorder (16). We conclude the review by suggesting implications for clinical management and propose next steps for research on theory of mind in bipolar disorder and its possible role as a trait marker for psychosis. IMPAIRMENTS OF THEORY OF MIND IN BIPOLAR DISORDER Given that impaired social cognition in patients with serious mental illness impacts on increased symptom severity, prolonged course of illness, higher rates of relapse, and daily functioning, characterization of the extent of these deficits is important (14, 17, 18). Although bipolar disorder is commoner than schizophrenia, theory of mind in this condition has been under-explored relative to its study in schizophrenia (7). We summarize current literature for the reader in Table 1. In the first part of the paper, we tackle the question of whether impaired theory of mind is characteristic across the mood states and whether it persists after symptomatic remission. Similarly, we ask whether it is present in both bipolar I disorder and bipolar II disorder and consider whether it can be detected in related “high-risk” or “sub-syndromal” populations. We also examine the evidence for such impairments in pediatric samples. We then assess methodological factors that may have confounded previous research, such as the type of assessment used and demographic influences. Here, we also highlight the seemingly varying scale of the problem and its breadth across different types of theory of mind. In the final section of part one, we seek to establish what the antecedents of impaired theory of mind are in bipolar disorder and what the symptom correlates of these deficits are. Medication effects are also considered. In achieving our initial aim, the hope is to generate information for clinicians who work with this patient group to help improve clinical outcomes (15). Frontiers in Psychiatry  |  www.frontiersin.org The Clinical Generalizability of Impairments across Sub-Groups One issue that has complicated the study of theory of mind in bipolar disorder is that this diagnostic label actually comprises a group of disorders with heterogeneous clinical presentation, course, and outcome (43, 44). Not only does the clinical course change as a patient cycles through recurrent depressive, manic, and sometimes mixed mood states (45), there are subtypes of bipolar disorder based on the severity of mania experienced, variable occurrence of psychosis within these subtypes (46), and related sub-syndromal bipolar subtypes to contend with (47). There has as yet been little systematic comparison of impairments in theory of mind across all subtypes, even though the vari- ability in clinical presentation might seem to necessitate it (35). It is likely that inconsistent results in the past may have partly reflected the heterogeneous presentation of bipolar disorder (10), the mixed nature of samples, and even indiscriminate mixing of samples with other affective disorders, such as major depression (24, 28). While the socio-cognitive profile of bipolar disorder across mood states is somewhat unclear (14), currently available evidence suggests that some form of impairment exists whatever the symptomatic phase of illness (48).i In the second part of the paper, the aim is to review evidence on whether impaired theory of mind can be considered a trait marker for psychosis across both affective and non-affective psychoses. Specifically, we ask whether patients with bipolar disorder and those with schizophrenia present with similar impairments. Here, we do not set out to serve as a review of schizophrenic theory of mind per  se, nor to make narrative comparisons between the separate literatures on theory of mind in the two disorders. Rather the purpose of this part of this paper is to establish the significance of data studies that have directly and quantitatively compared theory of mind abilities in the two disorders. Given the poorly understood origin of theory of mind deficits in bipolar disorder, we evaluate the possibility that a link to psychosis should be an important line of enquiry (13). Looking beyond the question of origin, could impaired theory of mind serve as a useful endophenotype of proneness to psychosis? We In one of the first studies to compare the performance of patients experiencing a depressed vs. manic mood state, the per- formance of both groups was impaired relative to healthy controls (26). ability to alse belie Pas reco The Clinical Generalizability of Impairments across Sub-Groups Atypical antipsychotic (6/43); antidepressant (2/43); mood stabilizer only (28/43); mood stabilizer and anticonvulsant (9/43); mood stabilizer and antipsychotic (6/43) The Reading the Mind in the Eyes Task; the Hinting Task EUTH impaired on both ToM tasks. No effec gender or drug treatment, clinical variables, nor history psychosis. Some correlations wit executive function Mood stabilizer (11/25); anticonvulsant (22/25); antidepressants (14/25); typical antipsychotics (3/25); atypical antipsychotics (18/25); sedatives (22/25); no medication (1/25) The Reading the Mind in the Eyes Task BP impaired. Performance associated with illness duration. Performance not associated with social functioning All patients receiving medication. Antidepressants (49/50); typical antipsychotic (6/50); atypical antipsychotic (4/50) Custom-made picture sequencing task using caricatures and verbal descriptions, followed by first- and second-order ToM questions AFF impaired on second-order ToM only. No correlations with IQ All patients receiving mood stabilizers. Majority Two stories examined ability to i Significantly lower performance in all ToM ToM, and her numb orrelation ative to with globa s. No effe variables elations w ated with associate M only. N all ToM n all T C. On hymi The Clinical Generalizability of Impairments across Sub-Groups In a first-order “false-belief” task, the ability to understand January 2016  |  Volume 6  |  Article 188 2 ing patients with bipolar disorder without direct comparison to patients with schizophrenia. edication details Taskb Key results ood stabilizers (10/12), atypical antipsychotics (5/12), datives (4/12) The Reading the Mind in the Eyes Test; the Faux Pas Recognition Test Trend toward impaired cognitive ToM, and trend toward association with higher number depressive episodes Affective ToM not impaired. No correlation between functionality and ToM ot specified The Hinting Task Patients’ verbal ToM impaired relative to HC. Performance not correlated with global functioning patients treated with mood stabilizers. Atypical tipsychotic (6/43); antidepressant (2/43); ood stabilizer only (28/43); mood stabilizer d anticonvulsant (9/43); mood stabilizer and tipsychotic (6/43) The Reading the Mind in the Eyes Task; the Hinting Task EUTH impaired on both ToM tasks. No effect gender or drug treatment, clinical variables, nor history psychosis. Some correlations with executive function ood stabilizer (11/25); anticonvulsant (22/25); tidepressants (14/25); typical antipsychotics (3/25); ypical antipsychotics (18/25); sedatives (22/25); no edication (1/25) The Reading the Mind in the Eyes Task BP impaired. Performance associated with illness duration. Performance not associated with social functioning patients receiving medication. Antidepressants 9/50); typical antipsychotic (6/50); atypical tipsychotic (4/50) Custom-made picture sequencing task using caricatures and verbal descriptions, followed by first- and second-order ToM questions AFF impaired on second-order ToM only. No correlations with IQ patients receiving mood stabilizers. Majority o received antipsychotics, antidepressants or nzodiazepines Two stories examined ability to appreciate first-order false beliefs; the Hinting Task; the Faux Pas recognition task Significantly lower performance in all ToM tests during acute phases vs. HC. Only impaired on Faux Pas test in euthymic phase Faux Pas test impairments not significant when neuropsychological performance accounted for (Continu essing patients with bipolar disorder without direct comparison to patients with schizophrenia. Medication details Taskb Key results Mood stabilizers (10/12), atypical antipsychotics (5/12), sedatives (4/12) The Reading the Mind in the Eyes Test; the Faux Pas Recognition Test Trend toward impaired cognitive ToM, and trend toward association with higher numbe depressive episodes Affective ToM not impaired. No correlation between functionality and ToM Not specified The Hinting Task Patients’ verbal ToM impaired relative to HC. Performance not correlated with global functioning All patients treated with mood stabilizers. tment, cl is. Some mance a formance ng cond-ord erforman phases vs as test in rments n ogical pe nifican ts duri paired ux Pas en neu counte nifican ts duri paired ux Pas en neu counte nifican ts duri paired ux Pas en neu counte o stories preciate ting Tas k abilizers. Major antidepressant ts receiving mo ved antipsycho zepines tics Medication details Taskb Key results age 55% Mood stabilizer (47/48-collapsed across groups) MAN: antipsychotics (20/20); antidepressants (1/20); anticonvulsants (5/20) DEP: antipsychotics (7/15), antidepressants (4/15); anticonvulsants (3/15) EUTH: antipsychotics (4/13), antidepressants (1/13); anticonvulsants (1/13) Six stories examined ability to appreciate first- and second-order false beliefs and deceptions. Stories read aloud with concurrent presentation cartoon drawings depicting action sequences Impaired first- and second-order ToM performance for DEP and MAN even when memory controlled for. MAN performance worse than DEP. EUTH not impaired age 52.5% n age 46.7% ge 46.7% mean ars; .7% F No between-group differences in mean number drugs received Regarding type, EUTH with psychosis received mood stabilizer and antipsychotic combination with higher frequency than EUTH without Patients without psychosis on mood stabilizers with higher frequency than EUTH with psychosis The Strange Stories Task Performance similar in bipolar patients with or without psychosis. Both impaired relative to HC. Impairments partly explained by general cognitive deficit ut mean ars; .5% F ge 33.3% age 44.5% All patients receiving mood stabilizers. Additionally 36% were receiving antidepressants, 48% benzodiazepines, and 54% antipsychotics. BP had higher exposure to antipsychotics than BP2. No differences between BP1 and BP2 in exposure to other psychotropic medications. BP1 had higher dose antipsychotics BP2 The Faux Pas test; the Reading the Mind in the Eyes Task Both BP1 and BP2 impaired relative to HC. When neurocognitive impairments and exposure to medications controlled, performance did not predict whether patient or HC. Impaired ToM partly mediated by executive function deficits and exposure to psychotropic medications age 22.3% ge 35.3% n age 28.6% All patients receiving medication. Mood stabilizer (7/14); anticonvulsants (6/14); antipsychotics (8/14); antidepressants (7/14); sedatives (10/14); stimulant (1/14) Custom-made test with scenarios describing complex social situations such as faux pas, followed by first- and second-order ToM questions Patients impaired on cognitively demanding second-order ToM. Reduced performance associated with longer illness duration, and increased symptom severity ge 35.7% n age 34.5% ge 44.8% All patients receiving medication. ng medication. sant (17/29); aty ssant (11/29); s 4) patients r 9); antic 29); anti Mood stabilizer (9/29); anticonvulsant (17/29); atypical antipsychotic (13/29); antidepressant (11/29); sedatives (2/29) The Movie for the Assessment of Social Cognition EUTH performed worse than HC for cognitive ToM, but not for affective ToM. EUTH showed higher “undermentalizing” but not higher “overmentalizing”. Number manic episodes correlated with “undermentalizing” and affective ToM severity orse than HC for c ctive ToM. EUTH izing” but not high umber manic epis ermentalizing” an ( cial sis dditionally 36% zodiazepines, exposure es between otropic sychotics BP2 The F Mind tabilizer tics (8/14); stimulant Custo desc such seco tabilizer tipsychotic s (2/29) The M Cogn sis dditionally 36% zodiazepines, exposure es between otropic sychotics BP2 The F Mind tabilizer tics (8/14); ; stimulant Cust desc such seco tabilizer tipsychotic s (2/29) The M Cogn han EUTH with ng mood stabi idepressants, 4 hotics. BP had han BP2. No d xposure to oth had higher dos ng medication. ants (6/14); an higher frequ All patients r were receivi and 54% an to antipsych BP1 and BP medications All patients r (7/14); antic 4) atients r 9); antic 29); anti cs Medication details Taskb Key results age 6.7% Stable medication regime for 6 weeks. Number of years’ exposure to psychotropic medications recorded but not reported. Medication effects not examined due to different combinations mood stabilizers, antidepressants, and antipsychotics The Strange Stories Task. Also a custom-made cartoon comprehension task that required ToM to interpret correctly Impaired relative to HC on verbal ToM. Although performance comparable to HC for non-verbal ToM, responses slower. ToM did not correlate with social or occupational functioning, but some correlations with executive function e 6.1% age 5% Mean number of psychotropic medications currently taken, including anticonvulsants, mood stabilizers, antipsychotics, stimulants, antidepressants, and sedatives = 2.04 The Reading the Mind in the Eyes Task EUTH responded faster in comparison to HC. Performance accuracy no different though. Faster response times predicted increased overall life functioning impairment e 6% of M-IV NA The Strange Stories Task; the Picture Sequencing Task; the Reading the Mind in the Eyes Task BP impaired on verbal ToM, but not visual or higher-order ToM tasks e 2% e 5% Medication-free at least 1 week prior to testing Custom-made measure false-belief understanding (“Affective Story Task”). Stories of emotionally-charged situations read aloud, participants asked false-belief question to assess whether understood potential for misunderstanding. BP impaired relative to HC in positive and negative conditions of Affective Story Task. BP also worse than HC on Hinting Task. Performance associated with younger age, earlier illness onset, and manic symptoms The Hinting Task ge 8.8% Majority patients medicated but receiving different classes medications (atypical antipsychotics, mood stabilizers, or both) The Reading the Mind in the Eyes Task; the Cognitive and Emotional Perspective Taking Task BD1 worse than HC on Reading Mind in the Eyes Task, and cognitive (but not emotional) condition of Cognitive and Emotional Perspective-Taking Task ge 00% e T M T M s rec me oM, but not affe ted to performa Mood stabilizin on ToM ed cognit mance no ognitive t had no e d receding The Social Sto mainly moo le during p ication-free ority patient ses medica ilizers, or b rec me sub- Medication details Taskb Key results A The Yoni task. Males: mood vitality and excitement su predicted performance Females: no sub-scales predicted performance ntipsychotics (31/49); antidepressants (15/49); mood tabilizers (16/49); sedatives (10/49) The Picture Sequencing Task BP performed worse than HC for ToM- relevant false-belief stories, but not on stories. No differences in performance symptomatic vs. euthymic patients, or vs. BD2 ntipsychotics (33/51); antidepressants (16/51); mood tabilizers (16/51); sedatives (10/51) The Picture Sequencing Task Neurocognition associated with ToM, b social cognition not associated with em regulation 8% lifetime exposure to psychotropic medications ToM subtest of NEPSY II (developmental neuropsychological assessment) No differences between BP and HC Mood stabilizers (18/33), atypical antipsychotics 28/33), antidepressants (15/33) Comic-strip task based in part on the Picture Sequencing Task, in which participants sequence cartoon stories and asked questions about characters’ mental states BP and all clinical sub-groups impaired measures, but did not differ from each in most ToM scores. Poorer performan on executive tasks did not fully explain impairments polar II disorder; BPnos, bipolar disorder not otherwise specified, BPsub, sub-syndromal bipolar disorder; DEP, depressed bipolar patients, DEPsub, polar patients; HC, healthy adult controls, MDD, major depressive disorder; MAN, manic bipolar patients; MIX, bipolar patients showing signs of both cation details Taskb Key results The Yoni task. Males: mood vitality and excitement su predicted performance Females: no sub-scales predicted performance sychotics (31/49); antidepressants (15/49); mood izers (16/49); sedatives (10/49) The Picture Sequencing Task BP performed worse than HC for ToM relevant false-belief stories, but not on stories. No differences in performance symptomatic vs. euthymic patients, or vs. BD2 sychotics (33/51); antidepressants (16/51); mood izers (16/51); sedatives (10/51) The Picture Sequencing Task Neurocognition associated with ToM, b social cognition not associated with em regulation lifetime exposure to psychotropic medications ToM subtest of NEPSY II (developmental neuropsychological assessment) No differences between BP and HC d stabilizers (18/33), atypical antipsychotics 3), antidepressants (15/33) Comic-strip task based in part on the Picture Sequencing Task, in which participants sequence cartoon stories and asked questions about characters’ mental states BP and all clinical sub-groups impaired measures, but did not differ from each in most ToM scores. ental stat d, BPsub ve disord ychotics zers (16/ fetime e stabilize ), antide II disord patients; used the “Yoni task” to assess the ability of healthy adults to attribute cognitive and emotional mental states on the basis of verbal cues and gaze direction (37). In the Yoni task (58), a trial comprises a cartoon outline of the face of a character named Yoni, and four colored pictures of objects belonging to a single category (e.g., fruits, chairs) or faces, one in each corner of the computer screen. The participant’s task is to point to the correct answer (the image Yoni is referring to), based on a sentence that appears at the top of the screen, and available cues, such as Yoni’s eye gaze and Yoni’s facial expression. With this task, Terrien et al. demonstrated that mood volatility showed a relationship with theory of mind performance collapsed across cognitive and affective theory of mind, but only in men. These findings raise the important issue of whether it is possible to detect impaired theory of mind in populations at increased risk of developing bipolar disorder, either through possession of traits and behaviors related to particular clinical dimensions, or through a genetic predisposi- tion to developing bipolar disorder. Does theory of mind impair- ment constitute a useful cognitive endophenotype for bipolar disorder? In this vein, Reynolds et al. detected impaired theory of mind in first-degree relatives of patients with bipolar disorder A more tractable means of assessing whether theory of mind deficits in bipolar disorder represent a trait marker independ- ent of mood state, has been to adopt the study of remitted or asymptomatic patients that are euthymic at the time of testing. While one might expect subtler theory of mind impairments in euthymic patients, the effects observed are certainly not negligible. Two important meta-analytic pieces of work have estimated that the effects sizes for theory of mind impairment in the euthymic state are in the medium range (0.5 < d < 0.8) (8, 48). While the majority of studies of theory of mind in euthymic patients have found evidence of impairment (19, 21, 30, 31), this has not universally been the case. Kerr et al. were not able to detect any difference in performance between their group of euthymic patients and healthy controls (26). Purcell et al. Thus, beyond there being evidence of theory of mind impairment across the different symptomatic phases, which is suggestive of a potential trait marker, there is currently insufficient evidence to support the existence of a differential profile of impairment across the depressed, manic, hypomanic, or mixed mood states. score <7 on the Hamilton Depression Rating Scale [HDRS; (21, 55)), a HDRS score <14 and a YMRS <5 (30), or a HDRS score <12 and YMRS <12 (31). These studies are, thus, potentially confounded by residual mood effects. Thus, a distinction has thus been made between the performance of “sub-syndromal” patients who score >7 but <15 on the HDRS, and truly euthymic patients who score <7 on the HDRS, with the performance of the former being more impaired than the latter (29). Nevertheless, beyond their theoretical importance, socio-cognitive deficits during euthymia are of notable clinical significance, given evi- dence that such disturbances constitute an important obstacle for social reintegration and rehabilitation (19). In the current Diagnostic and Statistical Manual of Mental Disorders classification system (56), the severity of mania expe- rienced by a patient with bipolar disorder has specific diagnostic implications. Patients who have experienced a manic or mixed episode that has lasted at least a week, or those who have experi- enced mania that is so severe that it has required hospitalization, are defined as having Bipolar 1 Disorder. By contrast, patients who have experienced less-intense elevated (hypomanic) moods, but no full-blown manic or mixed episodes, are defined as having Bipolar 2 Disorder. Most studies have so far focused on the theory of mind impairment in Bipolar 1 Disorder, however, some more recent studies have included comparisons between Bipolar 1 and Bipolar 2 Disorders on the Picture Sequencing Task, the Reading the Mind in the Eyes Task, and the Cognitive and Affective Perspective Taking Task in which participants assess written scenarios and attribute characters’ mental state or belief based on cognitive or emotional information (57). So far, none of these studies have found any evidence to support a differential theory of mind impairment (28, 35, 39).f While differential theory of mind impairment have not yet been demonstrated based on categorization of bipolar disorder according to severity of mania, links have been found between theory of mind impairment and the severity of certain aspects of hypomania, e.g., mood lability. Specifically, the study by Terrien et al. Poorer performan on executive tasks did not fully explain impairments r II disorder; BPnos, bipolar disorder not otherwise specified, BPsub, sub-syndromal bipolar disorder; DEP, depressed bipolar patients, DEPsub r patients; HC, healthy adult controls, MDD, major depressive disorder; MAN, manic bipolar patients; MIX, bipolar patients showing signs of bot r patie owing II (develo sessmen d in part o sk, in wh cartoon s bout cha mal bipol nic bipola ental stat d, BPsub ve disord Pnos, bipolar disor healthy adult cont Medication de NA Antipsychotics stabilizers (16/4 Antipsychotics stabilizers (16/5 68% lifetime ex Mood stabilizers (28/33), antidep 2, bipolar II disorder c bipolar patients; H cation d sychotics zers (16/ sychotics zers (16/ ifetime e stabilize 3), antide r II disord patients; Bipolar Disorder – Theory of Mind Mitchell and Young that someone can hold a belief that is different from the actual state of affairs is assessed, whereas in a second-order false-belief task, participants have to infer the (false) beliefs of one character about the (false) beliefs of a second character (49). Kerr et al.’s data from such a False Belief Task showed that both groups were less able than healthy controls to correctly attribute mistaken beliefs about an object’s location to predict or explain someone’s behavior. Similarly both patients in manic and depressed phases have demonstrated impairments (relative to healthy controls) on another classic theory of mind task known as the “Picture Sequencing Task”(50), in which participants sequence a series of cartoon picture stories that depict cooperation and deception, followed by explicit questions about characters’ mental states (42). These deficits persisted even when differences in age, intelligence, and executive function were accounted for. Elsewhere, mixed manic/depressed patients have shown impaired performance on a series of theory of mind tasks relative to healthy controls (25), including a false-belief task, the “Hinting task” that requires participants to infer from a subsequent hint what a character in a dialog really meant (51), and the “Faux Pas Recognition Test” (52) in which participants have to recognize from a short text when a character commits a social error and says something it would be better not to say. However, no differences in performance were found in exploratory analyses of the effects of mixed/manic mood state vs. depressed and euthymic states in another study using the Picture Sequencing Task (39). Frontiers in Psychiatry  |  www.frontiersin.org Whereas the affective theory of mind questions required first-order mental state understanding and empathy (e.g., “how does the character feel”), the cognitive theory of mind questions entailed more advanced mental state reasoning and false-belief understanding (e.g., “how a character might be misled into believing something is false based on false information from someone else”). Therefore at present, it cannot be ruled out that differential impairment of cognitive vs. affective theory of mind might simply reflect a dif- ference in degree of complexity or a difference in demand for lin- guistic processing. Overall, findings from a recent meta-analysis of performance of cognitive vs. affective theory of mind tasks by patients with bipolar disorder demonstrate that the differences noted above have not yet attained statistical significance across the body of current literature (48). using the “Strange Stories Task” (59) in which participants read a series of stories and answer questions about characters’ mental states or physical events (33). However, in another relevant study, children and adolescents with a parent with bipolar disorder who themselves exhibited some mood dysregulation but did not meet the diagnostic criteria for bipolar disorder, appeared unimpaired according to a task measuring recognition of mental states and identification of false beliefs (41). The predictive value of theory of mind impairments in “at risk” populations is, therefore, not yet clear (9), and further study of whether this deficit antedates bipolar disorder or not is required. Work that searches to identify potential “early warning” signs is important, because identifica- tion of earlier stages of bipolar disorder, prior to the first manic episode, may help develop interventions to prevent or delay its onset (60). In this section, we have seen that there is a reasonable level of evidence to indicate that theory of mind impairment is a feature of all mood states in bipolar disorder, although robust differential patterns across the various subtypes are not yet supported. That is not necessarily to say that there are no such effects, at this early stage in the literature it may simply be that there has not yet been enough research. What are now needed are more systematic, well-controlled investigations. However, given the existence of any evidence of mood-state-related impairments, heterogeneity needs to be taken into account in future research (12). Ideally, such investigation would be longitudinal and entail a patient acting as their own control while experiencing different mood states. were also unable to detect impaired theory of mind when their euthymic patients performed the Reading the Mind in the Eyes Task, in which participants attempt to match photos of the eye region during facial expressions with the corresponding emotional mental state word, thereby constituting a form of affective theory of mind (32, 53). Elsewhere, the deficits shown by euthymic patients performing the Reading the Mind in the Eyes affective theory of mind task became non-significant once neurocognitive impairments were controlled for (28). Studies of theory of mind in the euthymic state are, however, confounded by variable definitions of euthymia that have, for example, included a score <6 on the Young Mania Rating Scale [YMRS; (54)] and a January 2016  |  Volume 6  |  Article 188 Frontiers in Psychiatry  |  www.frontiersin.org 7 Bipolar Disorder – Theory of Mind Mitchell and Young to index affective theory of mind and the Faux Pas test to index cognitive theory of mind, Barrera et al. directly compared the performance of euthymic patients on these two forms of theory of mind. Whereas the patients with bipolar disorder did show impairment relative to healthy controls on the cognitive theory of mind test, they were not impaired on the affective theory of mind test (19). Here, the authors argued that the lack of impair- ment for affective theory of mind might reflect the relative lack of mood disturbance in euthymic patients. This suggestion is in accord with findings in three more-controlled studies of a greater impairment of cognitive theory of mind in bipolar disorder than affective theory of mind using questions about feeling vs. think- ing within the same task (30, 35, 36). However, in the Schenkel et al. study, the patients were experiencing an acute episode of bipolar disorder, not euthymia (35). Hence, the lack of current affective disturbance typically associated with euthymia cannot explain the lack of affective theory of mind impairment in that study. However, even though the cognitive and affective questions comprised part of the same task in the Schenkel et al. study, these questions still required different cognitive operations. Via such endeavors, a more well-grounded picture of the socio-cognitive profile of bipolar disorder across mood states will emerge (31). The recent longitudinal study by Ioannidi et al. examining cognitive theory of mind impairment across both the remitted and symptomatic state is an excellent start in this respect (25). Irrespective of theoretical implications, monitoring of theory of mind impairment in euthymic as well as symptomatic states has significant clinical value, since it might potentially prove a useful indicator of relapse potential in euthymia (9, 15, 37, 42). Longitudinal analyses would also provide valuable information on the course of impact that theory of mind impairment has. Early work already suggests an association between affective theory of mind impairment and social functioning 1 year later (32). Differing processing demands are also relevant to the incon- sistent impairments according to the tasks used to index the ability to make mental state inferences. For example, in one study, while patients with Bipolar 1 Disorder showed impairments on a first-order false-belief task, the Hinting Task, and the Faux Pas Test, only impaired performance on the Faux Pas Test persisted when patients later transitioned into euthymia (25). Similarly, in another study, first-degree relatives of patients with bipolar disorder demonstrated impairment on the Happé Strange Stories Test, but not the Reading the Mind in the Eyes Task, nor the Picture Sequencing Task (33). These differential task-dependent impairments have recently been quantified in a task-specific meta-analysis. In that work, small but significant effect sizes were obtained for differences in performance between patients and healthy controls with the Hinting and Reading the Mind in the Eyes Tasks (0.27 and 0.45, respectively), but a medium effect size was obtained for the difference in performance on the Faux Pas test (0.58). One of the more common explanations for this task-dependency has been differences in the complexity of theory of mind processing being assessed (10). False-belief tasks have become the gold standard for assessing young children’s under- standing of mind, but these tasks only index basic mentalizing, and for typically developing children, performance is significantly Frontiers in Psychiatry  |  www.frontiersin.org Methodological Generalizability Methodological Generalizability Just as for the heterogeneity of mood states associated with bipolar disorder, the tasks used to assess theory of mind are heterogeneous in both content and form. To some extent, this has been a necessary evil, since theory of mind is not a unitary construct (10, 48). Hence in this section, we consider both the pattern of differential impairment across different forms of theory of mind, and the possible influence of the theory of mind test used. It would perhaps be premature to assume that cogni- tive and affective theory of mind are equally affected by bipolar disorder, given the putative evidence for the (partial) separability in functional neuroanatomy (61) of these two types, and their differing component sub-processes. Indeed, there is evidence for differential behavioral impairment in other populations, including old age, schizophrenia, autism, and neurodegenerative disease (62–64). Using the Reading the Mind in the Eyes Task January 2016  |  Volume 6  |  Article 188 Frontiers in Psychiatry  |  www.frontiersin.org 8 Bipolar Disorder – Theory of Mind Mitchell and Young between cognitive demand and theory of mind may not be surprising given the inherent overlap between neurocognition and social cognition (11). So, what are the neuropsychological correlates of the theory of mind impairments? There are two important aspects to this question, first do impairments persist when neurocognitive performance is controlled for, and second, how does neurocognitive performance correlate with patients’ capacity for theory of mind. Many correlations were reported between performance of the Reading the Mind in the Eyes task and neurocognitive function in the first such study, including correlations with sustained attention, verbal fluency, and psy- chomotor speed (21). Furthermore, global cognitive impairment (reduced IQ) has been shown to correlate significantly with theory of mind impairment in a recent meta-analysis (48). The co-existence of theory of mind impairments with impairments of executive functions, such as inhibitory control, has received further support from later research with comprehensive neu- rocognitive batteries (40, 42), and correlations with sustained attention impairments seem particularly strong (27). These findings co-exist with demonstrations whereby supposed theory of mind deficits disappears once differences in neurocognition such as attention, verbal memory, and visuo-spatial memory are controlled for (25, 28). However, this mediating role for executive functions is not a universal finding (33). Methodological Generalizability Furthermore, in theory of mind studies that have incorporated matched cognitive control conditions, impaired theory of mind does not necessarily co- occur with impaired performance in that control condition (26, 39). Questions, therefore, remain as to why this relationship is not universal. Careful more extensive research with well-powered samples is required, perhaps with neurocognitive tests that more specifically assess individual domains of executive function (31). above chance by the age of four (65). Although understanding false-beliefs marks an important milestone in theory of mind development, it does not equip children with all they need to know about people’s lives and minds. Advanced theory of mind skills develop later, i.e., during middle childhood and beyond (66), and are necessitated by more complex aspects of social inter- actions. These more advanced forms not only require participants to understand differences in belief between characters, but also require them to detect and comprehend more subtle constructs, such as white lies, jokes, irony, and faux pas. An inter-related distinction also used to explain task-dependent impairments of theory of mind in bipolar disorder has been that between verbal and non-verbal tasks (10). For example, first-degree relatives of patients with bipolar disorder have demonstrated impaired ver- bal theory of mind (on the Happé Strange Stories Task), but no impairment on visual theory of mind tasks (Picture Sequencing Task, Reading the Mind in the Eyes Task) (33). This result was explained by the authors as reflecting the more demanding nature of the two visual tasks (cognitively and affectively demanding, respectively). It is, therefore, a recapitulation of the distinction above, albeit in altered form. A second distinction used to explain task-dependent theory of mind impairments is that of decoding vs. reasoning. Whereas decoding more closely approximates the perception of mental state cues, the latter places higher demands on domain-general cognitive resources, such as working memory and executive function (9). This particular distinction provides an alternative explanation of why some studies might have failed to detect impaired affective theory of mind in euthymia, but still have evi- denced impaired cognitive theory of mind (19, 28). The affective theory of mind task used in these two studies – the Reading the Mind in the Eyes Task – is essentially a measure of the ability to decode likely emotional state on the basis of perceptual informa- tion. Methodological Generalizability By contrast, the cognitive theory of mind task – the Faux Pas Test – is a much more complex test requiring reasoning about whether someone said something that someone else might not want to hear. These results, therefore, suggest that perceptually based theory of mind impairments may not always be detected, while reasoning-based theory of mind impairments may be easier to detect. We next turn to consider clinical correlates of theory of mind impairments in bipolar disorder. Here, the evidence is patchy, inconsistent, and incomplete, although currently available evi- dence does not favor reliable links with basic clinical variables (48). The only positive findings that exist so far are a possible association between performance of theory of mind tasks and illness duration (29, 42). Taken at face value, this suggests that theory of mind impairment is progressive, and that further study might be wise to determine in which direction the effects occur. However, elsewhere demonstration of this association has not been repeated (28), and meta-analysis of the links between socio- cognitive impairment and length of illness in bipolar disorder suggests that there is insufficient evidence to take the relation- ship between theory of mind impairment and illness duration seriously (12). Other attempts to link basic clinical variables with theory of mind impairment in bipolar disorder have failed to find support for an association with the number of illness episodes experienced (21, 28, 29), or age of onset (21, 29, 42).i In this section, we have seen that the results of prior literature on theory of mind impairments in bipolar disorder cannot be taken at face value without considering the influence of meth- odological choices such as (i) the level of complexity of theory of mind being assessed and (ii) the generic cognitive demands of the task used for assessment. In particular, some tasks are not able to detect the subtle impairments that might present in euthymic patients (31). Therefore in the future, a broader array of theory of mind tasks is warranted (35). In research on other populations, there have been calls for theory of mind tasks to become more ecological in nature and better mimic real-life scenarios (3, 67, 68). Perhaps more surprising has been the failure to find support for the impact of theory of mind impairment on social function- ing as discussed elsewhere for other psychiatric disorders (11, 18, 69, 70). Methodological Generalizability In the first study of this type, although patients with bipolar disorder in remission were impaired on a verbal theory of mind measure, the impairments showed no relationship with social and occupational functioning as indexed by the Life Functioning Questionnaire (31). Generalizability was widened Cognitive and Clinical Correlates In the previous section, it was suggested that the cognitive demand of different theory of mind tasks might influence the patterns of deficits observed in bipolar disorder. Indeed, a relationship January 2016  |  Volume 6  |  Article 188 Frontiers in Psychiatry  |  www.frontiersin.org 9 Bipolar Disorder – Theory of Mind Mitchell and Young with the demonstration by Barrera et al. using different theory of mind and social functioning measures in which they observed that neither scores on the Reading the Mind in the Eyes Task nor scores on the Faux Pas Test correlated with global functioning according to the Functioning Assessment Short Test (19). These two studies did, however, test euthymic patients, who are perhaps less likely to show sizeable functional impairments relative to symptomatic patients, and both assessed only a small sample of patients (N = 12 and N = 15, respectively). Yet similar patterns have emerged in larger datasets from symptomatic patients. In a study by Cusi et  al., performance on the Reading the Mind in the Eyes Task did not correlate with any social domain on the Social Adjustment Self-Report Scale in a mixed sample of Bipolar 1 Disorder patients with varying levels of depressive symptoms (22). Furthermore, a subsequent study by Benito et al. uncovered no evidence for an association between performance of the Hinting Task and global functioning according to the Functioning Assessment Short Test (20). However, a prospective study by Purcell et al. produced the interesting finding that abnor- mally short response times on the Reading the Mind in the Eyes Task predicted greater life functioning impairment as assessed by the Life Functioning Questionnaire (32). Thus, while theory of mind impairment might not predict concurrent social function- ing, it may be able to predict the likelihood of further decline. Alternatively, as suggested by the authors, since the prospective relationship was with response times on the theory of mind task rather than accuracy, it may be the case that quick mental state inferences are more helpful in understanding functional impairment. theory of mind performance (41). A more definitive study by Bora et al. examined correlations between serum lithium levels and theory of mind performance on both the Reading the Mind in the Eyes Task and the Hinting Task in euthymic patients with Bipolar 1 Disorder, but did not detect any such relationship (21). Cognitive and Clinical Correlates Medication effects on theory of mind have also been quantified and compared, using the Clinical Scale of Intensity, Frequency, and Duration of Psychopharmacological Treatment, to index cur- rent exposure to different classes of medication on a scale from 0 to 5. While that study also failed to find evidence of medication effects in either Bipolar 1 or Bipolar 2 disorder on the Reading the Mind in the Eyes Task, a significant correlation was observed with performance on the Faux Pas test (28). Furthermore, once exposure to benzodiazepines was controlled for, performance on the Faux Pas test no longer allowed the prediction of whether a participant was a patient or healthy control. There is currently a lack of optimism as to whether psychotropic medications, such as those prescribed for bipolar disorder, improve social cognition (71, 72). However, as to whether these drugs worsen social cogni- tions, such as theory of mind, further research is required. y q In this section, we have seen evidence that theory of mind impairment often co-exists alongside cognitive impairments, particularly those relating to executive functions. Furthermore, some of these cognitive impairments correlate with, or predict, the degree of theory of mind impairment. Thus, there is now a sufficient evidence base to warrant further investigation to flesh out our understanding of the relationship between the two, and how the mechanism of effects fits together (7, 10). For both thera- peutic purposes and theoretical reasons, it is particularly impor- tant to establish whether theory of mind impairment in bipolar disorder is primary in origin, or simply secondary to cognitive impairment. Regarding medication effects on theory of mind, not only are they of interest in their own right, but they also present an important confound to the comparison of results from prior studies (8). Yet, often studies only provide broad information on the drug classes being received, without identifying the name of the specific medicine being received. This needs to be rectified, although the separate effects of specific drugs will always be difficult to tease apart where patients are concurrently in receipt of multiple medications. Regarding clinical correlates, theory of mind studies in bipolar disorder are now accumulating, but they do not always examine the relation between social cognition and clinical variables (10). Cognitive and Clinical Correlates Future research that focused on core issues, concerning the evolution of theory of mind impairment in response to changes in clinical course, could enable more responsive, dynamic, and individualized patient care in social and occupational contexts (22). As lamented by others (10), only a handful of studies have investigated the potential influences of medication on theory of mind performance, such as duration of exposure, dose effects, or the type of medication being taken. Yet, as can be seen from Table 1, the medication profile of participant samples is often markedly heterogeneous, both across- and within-studies, and receipt of multiple medications is common. This poses a major potential confound. Often studies are underpowered to make statistical comparisons of the effects of different classes of medication, analyses are cursory and retrospective, with possible medication effects frequently being cited as study limitations. This has, in part, resulted from the challenges associated with accessing unmedicated samples of patients with bipolar disorder and from variations in medication profile inherent to the heterogeneity of bipolar disorder. Perhaps not surprisingly, the results of ad hoc analyses have been negative where attempted. Shamay-Tsoory et  al. divided their patients into three groups according to the medications being received: lithium (N = 9), carbamazepine (N = 6), and sodium valproate (N = 4). However, these three sub-groups did not differ in either cognitive or affective theory of mind performance (36). Post hoc analyses by Van Rheenen et al. also failed to detect an influence on theory of mind performance according to whether a patient was on vs. off antipsychotics, antidepressants, mood stabilizers, or benzodiazepines (39). Elsewhere, among people at high-risk for bipolar disorder, previous lifetime exposure to psychotropic medication (self-report) has also been shown not to influence Frontiers in Psychiatry  |  www.frontiersin.org COMPARATIVE ASSESSMENTS OF THEORY OF MIND IN BIPOLAR DISORDER AND SCHIZOPHRENIA In some populations, e.g., older adults, it has even been demonstrated that impairments of social cognition are reduced in magnitude when more life-like assess- ments are used (84, 85). Related to this is the predominant use of static photographs at present. By contrast, dynamic stimuli are also ecologically valid and are information-rich, which facilitates more accurate understanding (86–89). Evaluating the performance of patients with bipolar disorder when responding to theory of mind cues in more realistic situations will allow us to better understand how these impairments might translate into impairments in daily living. For example, the video modality adopted by Montag et al. for the purposes of evaluating more subtle impairments, in which participants view a film showing two women and two men spending an evening together, with the instruction to try to understand the feelings, thoughts, and inten- tions of the characters, for the purposes of answering a series of multiple-choice questions (30). Fourth, more longitudinal stud- ies are needed. In addition to the benefits discussed earlier, this endeavor would facilitate a better understanding of whether the deficits are static or progressive, which has important implica- tions for characterizing the natural history of bipolar disorder, its clinical management, and more accurate prediction of the likely functional deficits ahead. This might be enhanced by parallel studies of changes in functional neuroanatomy over time, to help establish the underlying mechanisms of change (23). In terms of the type of symptoms within bipolar disorder that might associate with theory of mind impairments, there have been a number of suggestions, including impulsivity (14, 32) and affect (21, 29). However, the most prevalent discussions have centered on a possible association with psychotic symptoms or history of psychosis. Indeed, it has been claimed that theory of mind impairment is characteristic of all the major psychoses, irrespective of diagnosis (13, 90). This makes sense given the partial overlap in symptoms across schizophrenia and bipolar disorder (91–93), and the common occurrence of psychosis in the manic state (94–96). The hypothesis that theory of mind impairments might present in both schizophrenia and bipolar disorder is further motivated by the partial overlap in genetic basis between the two disorders (97, 98). Therefore, we now turn to more substantive methodology, and evaluate theory of mind studies that have directly compared patients with diagnoses of bipolar disorder against those with diagnoses of schizophrenia. Clinical Implications and Next Steps Clinical Implications and Next Steps It has been recognized for some time now that establishing a clear pattern of theory of mind deficits in bipolar disorder may have profound implications for the clinical management of patients. Difficulties in understanding the mental state of others can result in the misreading of social cues, resulting in a reduced ability to accurately comprehend social interactions (73). Patients with impaired theory of mind are, therefore, unlikely to understand January 2016  |  Volume 6  |  Article 188 Frontiers in Psychiatry  |  www.frontiersin.org 10 Bipolar Disorder – Theory of Mind Mitchell and Young COMPARATIVE ASSESSMENTS OF THEORY OF MIND IN BIPOLAR DISORDER AND SCHIZOPHRENIA We summarize reports of direct comparisons of theory of mind impairment in these two patient groups in Table 2. Here, we do not seek to serve a review of literature on theory of mind impair- ments in schizophrenia per se. For that the interested reader is referred to works elsewhere (99–103). COMPARATIVE ASSESSMENTS OF THEORY OF MIND IN BIPOLAR DISORDER AND SCHIZOPHRENIA for the purposes of evaluating more subtle impairments, in which participants view a film showing two women and two men spending an evening together, with the instruction to try to understand the feelings, thoughts, and inten- tions of the characters, for the purposes of answering a series of multiple-choice questions (30). Fourth, more longitudinal stud- ies are needed. In addition to the benefits discussed earlier, this endeavor would facilitate a better understanding of whether the deficits are static or progressive, which has important implica- tions for characterizing the natural history of bipolar disorder, its clinical management, and more accurate prediction of the likely functional deficits ahead This might be enhanced by parallel the impact of their behavior on others, and this may contribute to their willingness to indulge in reckless or dangerous activities (74, 75). Moreover, difficulty in understanding the perspective of others may be an impediment to some psychological interven- tions (76, 77). Regarding the next phase of research, we make the following suggestions. First, the adoption of standardized task design would be prudent where possible, as has become commonplace for the study of child populations (78, 79), or as afforded by well-validated tests, e.g., “The Awareness of Social Inference Test” (80, 81), which has been extensively normed across adolescent, young- and middle-aged populations, and assessed for reliability, practice effects, and education- and IQ-independent consistency. This latter test assesses the ability to perceive social inferences both with (minimal context) and without the benefit of additional information revealing the protagonist’s true thoughts or feelings (enriched context), in order to assess whether participants are able to integrate and use explicit contextual information regarding speaker beliefs. Second, comprehensive neuropsychological batteries should be administered routinely alongside the theory of mind paradigms, e.g., the International Society for Bipolar Disorders-Battery for Assessment of Neurocognition (ISBD-BANC) (82), to separate out the effects of cognitive impairment and theory of mind impairment. Third, further research should adopt more ecologi- cal theory of mind tests, e.g., incorporating video-based material or virtual reality scenarios (68, 83). We do not suggest that these should replace use of the controlled simplistic tasks currently in use, as these have the capacity to isolate specific individual aspects of the impairment. On the other hand, although percep- tion of cues from isolated modalities is of theoretical interest, such an approach lacks the ecological validity of multi-modal cues in naturalistic settings. COMPARATIVE ASSESSMENTS OF THEORY OF MIND IN BIPOLAR DISORDER AND SCHIZOPHRENIA the impact of their behavior on others, and this may contribute to their willingness to indulge in reckless or dangerous activities (74, 75). Moreover, difficulty in understanding the perspective of others may be an impediment to some psychological interven- tions (76, 77). Regarding the next phase of research, we make the following suggestions. First, the adoption of standardized task design would be prudent where possible, as has become commonplace for the study of child populations (78, 79), or as afforded by well-validated tests, e.g., “The Awareness of Social Inference Test” (80, 81), which has been extensively normed across adolescent, young- and middle-aged populations, and assessed for reliability, practice effects, and education- and IQ-independent consistency. This latter test assesses the ability to perceive social inferences both with (minimal context) and without the benefit of additional information revealing the protagonist’s true thoughts or feelings (enriched context), in order to assess whether participants are able to integrate and use explicit contextual information regarding speaker beliefs. Second, comprehensive neuropsychological batteries should be administered routinely alongside the theory of mind paradigms, e.g., the International Society for Bipolar Disorders-Battery for Assessment of Neurocognition (ISBD-BANC) (82), to separate out the effects of cognitive impairment and theory of mind impairment. Third, further research should adopt more ecologi- cal theory of mind tests, e.g., incorporating video-based material or virtual reality scenarios (68, 83). We do not suggest that these should replace use of the controlled simplistic tasks currently in use, as these have the capacity to isolate specific individual aspects of the impairment. On the other hand, although percep- tion of cues from isolated modalities is of theoretical interest, such an approach lacks the ecological validity of multi-modal cues in naturalistic settings. In some populations, e.g., older adults, it has even been demonstrated that impairments of social cognition are reduced in magnitude when more life-like assess- ments are used (84, 85). Related to this is the predominant use of static photographs at present. By contrast, dynamic stimuli are also ecologically valid and are information-rich, which facilitates more accurate understanding (86–89). Evaluating the performance of patients with bipolar disorder when responding to theory of mind cues in more realistic situations will allow us to better understand how these impairments might translate into impairments in daily living. For example, the video modality adopted by Montag et al. Frontiers in Psychiatry  |  www.frontiersin.org Relative Scale of Impairment One of the most prominent issues among studies, comparing performance on theory of mind tasks across bipolar disorder and schizophrenia, is the question of whether the impairments are of equal magnitude. The use of traditional theory of mind tests, such as the Reading the Mind in the Eyes and the Faux Pas Tests, provides some evidence that the impairments observed in schizophrenia might be greater than those in patients with bipolar disorder (16, 105). However, the results are not always positive. In one study, no differences in performance were observed between patients with schizophrenia vs. bipolar disorder performing the Happé Strange Stories task (112). Similarly, while patients with schizophrenia, and bipolar patients with and without psychosis all showed deficits on the Reading the Mind in the Eyes and Hinting tasks, the level of impairment for each task was similar across the three patient groups (115). One explanation is that if the theory of mind impairment is linked to current psychosis, the deficit should show a relationship to symptom severity irrespec- tive of diagnosis, and therefore between-group differences might not necessarily be expected. There is certainly some supporting evidence for this (90, 109). A second explanation for the variable support for theory of mind impairments being greater for schizophrenia than for bipolar disorder is that as mentioned above, these simple tests lack ecological validity (107), which has promoted other studies wishing to compare the impairments in schizophrenia and bipo- lar disorder to use more ecological tests. Here, the evidence for greater impairment in schizophrenia is more convincing, which January 2016  |  Volume 6  |  Article 188 Frontiers in Psychiatry  |  www.frontiersin.org 11 ssessing patients with bipolar disorder with direct comparison to patients with schizophrenia. characteristics Details of medication supplied ToM Taskb Key results age 36.1 years; 86.7% MAN/DEP: mood stabilizers, antipsychotics and/or antidepressants SCHIZ: antipsychotics The Versailles-Situational Intention Reading task (V-SIR): video excerpts depicting complex real-life scenes social interactions. Also non-verbal comic-strip task (see Sarfati entry below) MAN impaired relative to HC. Performance of MAN and DEP not distinguishable. Trend toward SCHIZ performing worse than MAN. Relative Scale of Impairment No effect of group for comic- strip task ge 46.7 years; 50% M/50% F age 35.4 years; 12M/3F e 30.1 years; 5M/10F age 42.2 years; 22.2% age 42.5; 80% M/20% F e 36.1; 33.3% M/66.7% F EUTH: atypical antipsychotic (16/18); typical antipsychotic (3/18); mood stabilizer (18/18); antidepressant (8/18); sedative (5/18) The Reading the Mind in the Eyes Task; the Faux Pas test Both SCHIZ and EUTH performed worse than HC. SCHIZ performed worse than EUTH in both tasks SCHIZ: atypical antipsychotic (19/30); typical antipsychotic (11/30); Mood stabilizer (4/30); antidepressant (2/30); sedative (8/30) e 44.8 years; 54.5% BP: 269.8 mg chlorpromazine equivalents SCHIZ: 555.9 mg chlorpromazine equivalents The Reading the Mind in the Eyes Task; the Hinting Task BP impaired on Reading the Mind in the Eyes Task; performance comparable to SCHIZ. More subtle impairment in BP relative to SCHIZ for Hinting Task age 41.1 years; 72.3% e 37.5 years; 39.9% ge 42.3 years, 8.3% Not specified The Sally-Anne Task (first-order ToM); the Ice-Cream Van Test (second-order ToM) Both SCHIZ and AFF performed Sally-Anne Task normally. SCHIZ impaired on Ice-Cream Van Test, but not AFF age 46.3 years; 60.7% e 20.4 years; 45% M/55% F e 21.7 years; 27% M/73% F AD: mean age 22.8 years; F BP: antipsychotic (24/40); antidepressant (24/40); mood stabilizer (16/40) The Reading the Mind in the Eyes Task SCHIZ/FEP/SAD more impaired than BP. Across diagnostic groups, performance correlated with psychotic but not affective symptoms SCHIZ/FEP/SAD: antipsychotic (20/23); antidepressant (3/23); mood stabilizer (1/23) e 38.6 years; 37% M/63% F BP and SCHIZ: receiving unspecified pharmacological treatment The Hinting Task SCHIZ performed worse than BP and HC. BP also worse than HC age 40.4 years; 57.1% e 43.3 years; 42% M/58% F e 43.9 years; 54.4% age 44.7 years; 55.3% e 41.4 years; 55.6% BP: antipsychotic (41/68); lithium (13/68) SCHIZ: antipsychotic (38/38) The Awareness of Social Inference Test On lie and sarcasm sub-scales, BP not impaired relative to HC, but SCHIZ performed better than BP and SCHIZ (C ti d ng the Mind in the g Task ness of Social Test Mind in the inting Task Task (first-order eam Van Test oM) e Readi es Task e Hintin e Aware erence T essa /23) zer (1 haracteristics Details of medication supplied ToM Taskb Key results e 41.7 years; 40% M/60% F age 28.3 years; 86.7% 34.3 years; 66.7% AFF: antidepressant only (9/15); antidepressant and typical antipsychotic (5/15); antidepressant and atypical antipsychotic (1/15) The Hinting Task BP not impaired relative to HC. SCHIZ worse than HC and AFF. Across diagnostic groups, performance correlated with psychotic (delusions and hallucinations) but not negative symptoms SCHIZ: typical antipsychotic only (4/15); typical antipsychotic and anticholinergic (5/15); atypical antipsychotic only (5/15); atypical antipsychotic and anticholinergic 10.8 years; 78.3% N/A The Reading the Mind in the Eyes Task SCHIZ impaired, but BP no different to HC age 10.6 years; 71.4% 10.6 years; 55.2% e 32.2 years; 100% F Not specified, but mothers undergoing current treatment for a psychiatric condition excluded Five-minute video recordings of unstructured play session with baby coded Relative to HD, DEP less likely to comment on baby’s mental state. SCHIZ interactional behavior no different to HC e 29.0 years; 100% F age 30.5 years; 100% F 30.5 years; 100% F e 38.3 years; 40% M/60% age 36.5 years; 63.3% 35.9 years; 65.5% MAN: mood stabilizer (5/28); atypical antipsychotic (5/28); typical antipsychotic (1/28); mood stabilizer and atypical antipsychotic (8/28); mood stabilizer and antidepressant (4/28); typical antipsychotic and atypical antipsychotic and anticonvulsant (1/28); atypical antipsychotic and The Strange Stories Task Both patient groups equally impaired. Reduced ToM performance correlated with delusion severity in MAN only eristics Details of medication supplied ToM Taskb Key results years; 40% M/60% F 3 years; 86.7% ears; 66.7% AFF: antidepressant only (9/15); antidepressant and typical antipsychotic (5/15); antidepressant and atypical antipsychotic (1/15) The Hinting Task BP not impaired relative to HC. SCHIZ worse than HC and AFF. Across diagnostic groups, performance correlated with psychotic (delusions and hallucinations) but not negative symptoms SCHIZ: typical antipsychotic only (4/15); typical antipsychotic and anticholinergic (5/15); atypical antipsychotic only (5/15); atypical antipsychotic and anticholinergic ears; 78.3% N/A The Reading the Mind in the Eyes Task SCHIZ impaired, but BP no different to HC 6 years; 71.4% ears; 55.2% years; 100% F Not specified, but mothers undergoing current treatment for a psychiatric condition excluded Five-minute video recordings of unstructured play session with baby coded Relative to HD, DEP less likely to comment on baby’s mental state. SCHIZ interactional behavior no different to HC years; 100% F 5 years; 100% F ears; 100% F years; 40% M/60% 5 years; 63.3% ears; 65.5% MAN: mood stabilizer (5/28); atypical antipsychotic (5/28); typical antipsychotic (1/28); mood stabilizer and atypical antipsychotic (8/28); mood stabilizer and antidepressant (4/28); typical antipsychotic and atypical antipsychotic and anticonvulsant (1/28); atypical antipsychotic and antidepressant (1/28); anticonvulsant and antidepressant (1/28); no medication (3/28) The Strange Stories Task Both patient groups equally impaired. Reduced ToM performance correlated with delusion severity in MAN only SCHIZ: atypical antipsychotics (21/30); typical antipsychotics (7/30); no medication (2/30) years; 54.3% 6 years; 57.1% %; 50% M/50% F BP1: antipsychotic (2/33); mood stabilizer (7/33); antipsychotic and mood stabilizer (10/33); antidepressant and mood stabilizer (7/33); antipsychotic and antidepressant and mood stabilizer (2/33) SCHIZ: antipsychotic (18/56); antipsychotic and antidepressant (18/56); antipsychotic and mood stabilizer (5/56); antipsychotic and antidepressant and mood stabilizer (7/56) The Awareness of Social Inference Test Both BP1 and SCHIZ impaired, SCHIZ worse than BP1 (Continued ristics Details of medication supplied ToM Taskb Key results ears; 40% M/60% F 3 years; 86.7% ears; 66.7% AFF: antidepressant only (9/15); antidepressant and typical antipsychotic (5/15); antidepressant and atypical antipsychotic (1/15) The Hinting Task BP not impaired relative to HC. SCHIZ worse than HC and AFF. Across diagnostic groups, performance correlated with psychotic (delusions and hallucinations) but not negative symptoms SCHIZ: typical antipsychotic only (4/15); typical antipsychotic and anticholinergic (5/15); atypical antipsychotic only (5/15); atypical antipsychotic and anticholinergic ars; 78.3% N/A The Reading the Mind in the Eyes Task SCHIZ impaired, but BP no different to HC 6 years; 71.4% ears; 55.2% years; 100% F Not specified, but mothers undergoing current treatment for a psychiatric condition excluded Five-minute video recordings of unstructured play session with baby coded Relative to HD, DEP less likely to comment on baby’s mental state. SCHIZ interactional behavior no different to HC years; 100% F 5 years; 100% F ears; 100% F years; 40% M/60% 5 years; 63.3% ears; 65.5% MAN: mood stabilizer (5/28); atypical antipsychotic (5/28); typical antipsychotic (1/28); mood stabilizer and atypical antipsychotic (8/28); mood stabilizer and antidepressant (4/28); typical antipsychotic and atypical antipsychotic and anticonvulsant (1/28); atypical antipsychotic and antidepressant (1/28); anticonvulsant and antidepressant (1/28); no medication (3/28) The Strange Stories Task Both patient groups equally impaired. Reduced ToM performance correlated with delusion severity in MAN only SCHIZ: atypical antipsychotics (21/30); typical antipsychotics (7/30); no medication (2/30) ears; 54.3% 6 years; 57.1% 50% M/50% F BP1: antipsychotic (2/33); mood stabilizer (7/33); antipsychotic and mood stabilizer (10/33); antidepressant and mood stabilizer (7/33); antipsychotic and antidepressant and mood stabilizer (2/33) SCHIZ: antipsychotic (18/56); antipsychotic and antidepressant (18/56); antipsychotic and mood stabilizer (5/56); antipsychotic and The Awareness of Social Inference Test Both BP1 and SCHIZ impaired, SCHIZ worse than BP1 g groups, performance correlated with psychotic (delusions and hallucinations) but not negative symptoms the SCHIZ impaired, but BP no different to HC ngs ion Relative to HD, DEP less likely to comment on baby’s mental state. SCHIZ interactional behavior no different to HC Both patient groups equally impaired. Reduced ToM performance correlated with delusion severity in MAN only Both BP1 and SCHIZ impaired, SCHIZ worse than BP1 (Continu 60% M/40% ars; 33.3% years; 20% 3.3% ge 37.6 years; n age ; 66% 6% M/54% F ge 37.6 years; n age ; 66% rder; DEP, depr ophrenia. aired, Both BP1 and SCHIZ SCHIZ worse than BP sant (1/28); anticonvulsant and sant (1/28); no medication (3/28) ypical antipsychotics (21/30); typical otics (7/30); no medication (2/30) sychotic (2/33); mood stabilizer psychotic and mood stabilizer ntidepressant and mood stabilizer psychotic and antidepressant and bilizer (2/33) tipsychotic (18/56); antipsychotic pressant (18/56); antipsychotic stabilizer (5/56); antipsychotic and sant and mood stabilizer (7/56) Not specif treatment f F 60% MAN: moo antipsycho (1/28); moo antipsycho antidepres and atypic antidepres antidepres SCHIZ: at antipsych BP1: antip (7/33); an (10/33); a (7/33); an mood sta SCHIZ: an and antid and mood antidepre s; 54.3% ears; 57.1% % M/50% F Details of medication supplied ToM Taskb Key results 60% M/40% MAN: antipsychotic (9/10) SCHIZ: antipsychotic (24/25) No difference in dose between groups Custom-made comic-strip task; participants select card (from four) most likely to be last cartoon drawing No impairments with disorganizat worst ars; 33.3% years; 20% .3% e 37.6 years; n age BP1 with psychosis: antipsychotic (14/24); anticonvulsant (13/24); antidepressant (10/24); mood stabilizer (5/24) The Reading the Mind in the Eyes Task; the Hinting Task All clinical groups than HC, but at s another BP1 without psychosis: antipsychotic (8/24); anticonvulsant (8/24); antidepressant (10/24); mood stabilizer (2/24) 66% SCHIZ: antipsychotic (29/30); anticonvulsant (19/30); antidepressant (13/30); mood stabilizer (2/30) % M/54% F e 37.6 years; n age 66% BP with psychosis: antipsychotic (8/24); anticonvulsant (8/24); antidepressant (10/24); mood stabilizer (2/24) The Reading the Mind in the Eyes Task; the Hinting Task. ToM only predict capacity for SCH BP without psychosis: antipsychotic (14/24); anticonvulsant (13/24); antidepressant (10/24); mood stabilizer (5/24) SCHIZ: antipsychotic (29/30); anticonvulsant (19/30); antidepressant (13/30); mood stabilizer (2/30) rder; DEP, depressed bipolar patients, DYS, Dysthymia; EUTH, euthymic bipolar patients; FEP, First-episode Psychosis; HC, ophrenia. Symptomatic and Cognitive Mediators of the Differences Given that patients with schizophrenia are sometimes more impaired than patients with bipolar disorder, the question becomes what is driving these differences? In cross-diagnosis theory of mind studies, differences between the patients with schizophrenia and bipolar disorder with respect to various basic clinical factors often occur, including substance abuse (105) and number of hospitalizations (115). Beyond striving to match such basic clinical variables, another important target is to match for generic severe mental illness pathology, so that any differences in theory of mind impairment can then be attributed to the disorders themselves rather than generic differences in symptom severity. When theory of mind in patients with schizophrenia and bipolar disorder have been analyzed taking account of broad symptom variables, such as depression, positive, and negative symptoms, these types of factors are not always significant predictors of impairment (108, 116). Moreover, differences in theory of mind performance often remain significant after statistically control- ling for differences in these broad measures (16). gf Matching for level of positive symptoms at the recruitment rather than statistical analysis stage has further facilitated evalua- tion of theory of mind impairment according to disorder. When this approach was adopted, patients with schizophrenia still showed a greater theory of mind impairment than patients with bipolar disorder (112), implying that factors other than psychosis must also contribute to differences in performance between the patient groups. Yet weight to a cross-diagnostic link between theory of mind impairment and specific positive symptoms has been provided by Marjoram et al., who evidenced such a rela- tionship across patients with schizophrenia and a mixed group of patients with unipolar or bipolar depression. Rather than the theory of mind impairment being disease specific and only occurring in patients with schizophrenia, they observed a cross- diagnostic symptom-specific relationship between performance of the Hinting task and positive symptoms as indexed by severity of hallucinations/delusions (109). A similar story emerges from other comparisons, such as the demonstration by Guastella et al. that performance of the Reading the Mind in the Eyes Test was a strong predictor of global positive symptoms across patients with likely psychotic vs. bipolar illness (90). Interestingly, when the theory of mind performance of patients with schizophrenia who did vs. ask. cap rst-episode Ps ask. cap st-episode P ( ); p ( ); mood stabilizer (2/24) y BP without psychosis: antipsychotic (14/24); anticonvulsant (13/24); antidepressant (10/24); mood stabilizer (5/24) SCHIZ: antipsychotic (29/30); anticonvulsant (19/30); antidepressant (13/30); mood stabilizer (2/30) essed bipolar patients, DYS, Dysthymia; EUTH, euthymic bipolar ( ) p ( ) mood stabilizer (2/24) y BP without psychosis: antipsychotic (14/24); anticonvulsant (13/24); antidepressant (10/24); mood stabilizer (5/24) SCHIZ: antipsychotic (29/30); anticonvulsant (19/30); antidepressant (13/30); mood stabilizer (2/30) essed bipolar patients, DYS, Dysthymia; EUTH, euthymic bipolar mood sta BP withou anticonvu mood sta SCHIZ: an (19/30); a (2/30) ssed bipola Bipolar Disorder – Theory of Mind Mitchell and Young with bipolar disorder, it was only performance of the schizo- phrenic patients with thought disorder that was impaired relative to healthy controls (114). The performance of the patients with schizophrenia without thought disorder was comparable to that of patients with bipolar disorder, again suggesting a link between theory of mind impairment and specific symptoms of psychosis, rather than a general increase in impairment in schizophrenia.h implies that patients with schizophrenia might only show greater theory of mind impairments than those in bipolar disorder on more demanding or more life-like tests (108, 113). The Versailles- Situational Intention Reading task (V-SIR) also comprises video excerpts, and requires participants to rate the probabilities of affirmations of the intentions of different characters. With this task, a similar story emerges, and patients with schizophrenia again showed greater deficits than patients with bipolar disorder, but while the difference between schizophrenic and depressed patients was significant, the difference between schizophrenic and manic patients was not quite significant (104). Thus, there may be two co-existing patterns of results, namely a symptom-specific relationship between theory of mind impair- ment and certain positive symptoms that are independent of diagnosis, and another unidentified cause of the differences. As to what the likely cause is of this other unidentified contribution to the differences, there are a number of candidates. Attributional style has been explored in patients with schizophrenia and bipolar disorder, and while both groups showed evidence of hostile socio- cognitive biases, theory of mind impairment on the Hinting Task was still greater in patients with schizophrenia than those with bipolar disorder, thus ruling attribution style out as a possible mediator (107). Emotion regulation has also been investigated. While patients with schizophrenia showed significantly greater theory of mind impairment than those with bipolar disorder, and distinct patterns of cognitive strategies were used to regulate emotion in the two patient groups (schizophrenia: more likely to engage in catastrophizing and rumination; bipolar disorder: more likely to blame themselves and less likely to engage in positive reappraisal), associations between theory of mind performance and affect regulation were not observed in either group (113). On the possibility of whether differences in medication dose or type between patients with schizophrenia and bipolar disorder influ- ence differences in theory of mind impairment, variability and multiplicity in the medications being taken, makes comparison of respective medication effects difficult (112, 116). However, it is perhaps unlikely that medication differences might drive differences in theory of mind performance. First, antipsychotic equivalence dosage appears to have no effect on theory of mind performance, i.e., there is no evidence of correlation between the two (16, 109, 114). Second, use of antipsychotic medication did not alter the predictive power of performance on the Reading the Mind in the Eyes Test in relation to severity of positive symptoms (90). Third, when the theory of mind performance of bipolar patients taking antipsychotics is compared to the performance of bipolar patients not taking antipsychotics, no significant differ- ences were observed (108). Frontiers in Psychiatry  |  www.frontiersin.org January 2016  |  Volume 6  |  Article 188 Symptomatic and Cognitive Mediators of the Differences did not show evidence of thought disorder (another positive symptom) was compared to the performance of patients Another potential mediator of differences in theory of mind performance worthy of consideration is the differences in cogni- tive impairment between these two patient groups (117–119). This is a factor that comparative studies of theory of mind across bipolar disorder and schizophrenia do not always control for, leaving the door open for differences in cognitive function between the two groups to confound differences in theory of mind impairment. In the direct comparative literature, both differences in theory of mind impairment and in cognitive function in the verbal memory, episodic memory, working memory, attentional, visual learning, reasoning, and processing speed domains have been shown to co-exist in patients with schizophrenia vs. bipolar disorder, but the impact of specific cognitive differences on dif- ferences in theory of mind performance have not been analyzed January 2016  |  Volume 6  |  Article 188 15 Mitchell and Young Bipolar Disorder – Theory of Mind Despite the uncertain nature of the association of theory of mind impairment across the two affective and non-affective psychoses, given the potential for socio-cognitive deficits to impact on social and occupational function, their comparison remains important, because it may partly explain differences in outcome between the disorders (16). For this same reason, reliably identified differences among diagnoses may be crucial to pinpoint treatment planning, medication management, and long-term patient care (115). Establishing differences in social functioning might also be indicative of the likely success of reme- diation through recent socio-cognitive training schemes that aim to improve abilities, such as theory of mind (124–127). It has been claimed that socio-cognitive impairments, such as theory of mind, may be less of a determinant of functioning in bipolar disorder than in schizophrenia, and therefore that non-social cognitive remediation may be better suited for bipolar disorder (108). However, there has been little direct comparison of the links between theory of mind impairment and social functioning in the two patient groups. In the study by Caletti et al., patients with bipolar disorder showed greater social functioning accord- ing to the DSM General Assessment of Functioning Scale (56), level of functioning was then shown to correlate with theory of mind score, and impairments on the Reading the Mind in the Eyes Test and Faux Pas Test were worse in schizophrenia than in bipolar disorder (105). The Implications of Differential Impairments p In the literature focusing exclusively on bipolar disorder, moves to link the experience of psychosis with increased theory of mind impairment, although derived from a strong rationale, have not yet been particularly productive. Bora et al. found no impact of history of psychosis on performance of the Hinting Task when comparing 26 patients with such a history to 17 patients with no past history, but at the time of testing the patients were euthymic (21). However, in another study, performance of that task by symptomatic patients showed no difference between patients with and without past history of psychosis (20). The same pattern has been noted for other theory of mind tests, such as the Happé Strange Stories Task (27), and for the relationship of history of psychosis to cognitive and affective theory of mind (19), and for both Bipolar 1 and Bipolar 2 Disorders (28). It might, therefore, be concluded that theory of mind deficits do not constitute a vulnerability marker for psychosis. However, in schizophrenia itself, theory of mind deficits lessen when patients are in remission (101, 120). Thus, seeking to link deficits to a history of psychosis once bipolar patients are no longer experiencing psychosis may be less likely to succeed than if testing patients currently experiencing psychosis. We might not yet be using the most optimal methods to evaluate the research questions being pursued in this field.i In the first part of this review, we considered whether theory of mind impairment could be a trait marker for bipolar disorder across different mood states. Here, the question is could a theory of mind impairment go one step further, and serve as a useful cognitive endophenotype of proneness to psychosis? There are certainly examples of non-social cognition being accepted as can- didate endophenotypes for bipolar disorder and schizophrenia (121, 122), and if theory of mind impairments prove to be an endophenotype for the psychoses, this knowledge could ulti- mately aid in efforts to identify risk-related genes for this group of disorders, as well as in prevention and early intervention. At present, yes theory of mind impairments are present in both schizophrenia and bipolar disorder, but attempts to link these findings as originating from a common (genetic) cause have not yet been as successful as was hoped (108). Symptomatic and Cognitive Mediators of the Differences It can be inferred from these data that the impact of theory of mind impairment on functioning that patients with schizophrenia experience might be greater than that experienced in bipolar disorder, simply because they have a greater theory of mind deficit. Although the correlations were not examined separately in each patient group, this was performed in a separate study in which better theory of mind performance predicted better functioning, but only for the patients with schizophrenia, not for those with bipolar disorder (116). So, the early signs are that theory of mind impairment does indeed have more of an impact on everyday functioning in schizophrenia than in bipolar disorder. (16, 105, 108). The evidence for a differential influence of general cognitive ability initially appears a little stronger, since IQ has been shown to correlate with performance of the Reading the Mind in the Eyes Test in patients with schizophrenia but not in patients with bipolar disorder, and vice versa for performance of the Hinting Task (16). However, the inclusion of IQ when analyz- ing differences in theory of mind does not tend to change the pattern of differences observed for the two disorders (16, 112). The Implications of Differential Impairments It remains to be proven unequivocally that theory of mind impairment in bipolar disor- der and schizophrenia occurs specifically because the two are both types of psychosis (108). Future studies might benefit from expanding the comparisons to explore theory of mind impair- ment in other related disorders, such as schizoaffective disorder, schizophreniform disorder, and schizotypal personality disorder (13, 123). Frontiers in Psychiatry  |  www.frontiersin.org CONCLUSION This theoretical review has attempted to synthesize the existing data examining the ability of people with bipolar disorder to deduce the feelings and intentions of other minds via “theory of mind,” and what has been learned from the comparative study vs. the abilities of people with schizophrenia. In drawing the literature together, a number of themes were identified. In part one, these included the generalizability of impairments across different pres- entations of bipolar disorder, changes in impairment according to the type of theory of mind and the task used for assessment, the influence of cognitive impairment and relationship to illness vari- ables, and the prominent suggestion of a relationship to history of psychotic symptoms. Then in part two, the prominent themes included a smaller theory of mind impairment in patients with bipolar disorder vs. schizophrenia, the relationship to differences in symptoms and cognitive impairments between the disorders, and the likely consequences of the differences in theory of mind impairment for the clinical management of patients with bipolar disorders vs. schizophrenia. January 2016  |  Volume 6  |  Article 188 Frontiers in Psychiatry  |  www.frontiersin.org 16 Bipolar Disorder – Theory of Mind Mitchell and Young increasingly sophisticated methods, the question of interest then becomes what other factor is protecting patients with bipolar disorder against the potential for theory of mind impairment to compromise functional outcome. As to the question of what should be done about theory of mind impairments in bipolar disorder, by understanding the cognitive mechanisms that underlie theory of mind impairment, reformulations as to how to remediate these skills are facilitated. There is certainly optimism about possible remediation in the literature on theory of mind in bipolar disorder (23, 35), just as there has been for the improvement of theory of mind in schizophrenia. Here, close examination of developments in the literature on social cognition remediation in schizophrenia will likely be of great inspiration. Indeed, there has already been one successful report of the benefits of a remediation program originally developed for use with patients with schizophrenia being transferable to patients with a diagnosis of bipolar disorder (127). CONCLUSION If the neurodevelopmental nature of schizophrenia and its timing mitigate against acquisition of theory of mind to some degree (5), the less pronounced neurodevelopmental processes behind adult forms of bipolar disorder could be taken to indicate an even greater potential for therapeutic success in attempts to remediate theory of mind impairment in bipolar disorder. Given our increased understanding of the neurobiological networks involved in theory of mind, neuroimaging research will help elucidate the dysfunctional underlying brain mechanisms across the psychoses, and thereby further contribute to new advances in the treatment of bipolar disorder. Due to many of the complexities discussed during this theo- retical review, our understanding of theory of mind impairment in bipolar disorder is not yet complete or consolidated, and further research will be required before our knowledge reaches the advanced state of the literature relating to schizophrenia. However, currently available data suggest the following trends. First, although consistent differences in impairment between the mood states remain elusive, there is convincing evidence that theory of mind is impaired in some way across the mood states, and into the supposedly asymptomatic state of euthymia. It may, therefore, be considered a trait rather than state impairment, i.e., one that is an enduring correlate of bipolar disorder. Given that the structural neuroanatomical abnormalities associated with bipolar disorder include regions crucial for the mediation of theory of mind, e.g., medial prefrontal cortex (128), this is perhaps not surprising. Genome-wide association studies have similarly identified an enduring genetic association between the ZNF804A risk-variant known to increase susceptibility for bipolar disorder and the phentotype for (ab)normal functional connectivity dur- ing theory of mind (129). As to methodological generalization, given that the processing of emotion cues and some of the com- mon neurocognitive sub-processes, e.g., “representing mental states with propositional content” needed for any form of meta- representation (130), are compromised in patients with bipolar disorder (38, 131–133), it is likely that further research with sensi- tive methodology will likely demonstrate impairment across both cognitive and affective theory of mind. We further predict that the possible inter-dependence of impairments in executive functions and theory of mind will eventually prove fruitful given the strong evidence elsewhere for a deterministic relationship between the two processes throughout normal development (134, 135). FUNDING This review of current literature was conducted without fund- ing. However, Dr. RM is currently supported by a NARSAD Young Investigator Grant from the Brain & Behavior Research Foundation. Prof. AY is currently supported by the National Institute for Health Research (NIHR) Biomedical Research Centre at South London and Maudsley NHS Foundation Trust and King’s College London. The posts of both Dr Mitchell and Prof Young are both supported by the Higher Education Funding Council for England. AUTHOR CONTRIBUTIONS Dr. RM conducted the literature review and drafted the manu- script. Prof. AY subsequently provided invaluable comments and direction on that manuscript. Although this review was wide-ranging, it has highlighted a number of pertinent gaps in the field, and has identified a number of possible future directions. A more comprehensive understand- ing of theory of mind impairments in bipolar disorder will be of great clinical utility in devising improved psychological or cogni- tive therapies that assist patients with everyday life skills. While early studies of bipolar disorder have not yet established a clear relationship between these impairments and functional outcome, it is known from other patient populations that impaired theory of mind is a crucial factor underlying poor life skills, poor social cognition, and some aspects of psychosis. Based on this wider evi- dence set, a phenomenon with this potential impact is deserved of further study. Ultimately, if a lack of relationship between theory of mind impairment and functional outcome was perpetuated by disorder. J Clin Exp Neuropsychol (2013) 35:655–68. doi:10.1080/13803395 .2013.809700 4. Sabbagh MA. Understanding orbitofrontal contributions to theory-of-mind reasoning: implications for autism. Brain Cogn (2004) 55:209–19. doi:10.1016/j.bandc.2003.04.002 disorder. J Clin Exp Neuropsychol (2013) 35:655–68. doi:10.1080/13803395 .2013.809700 4. Sabbagh MA. Understanding orbitofrontal contributions to theory-of-mind reasoning: implications for autism. Brain Cogn (2004) 55:209–19. doi:10.1016/j.bandc.2003.04.002 5. Korkmaz B. Theory of mind and neurodevelopmental disorders of child- hood. Pediatr Res (2011) 69:101R–8R. doi:10.1203/PDR.0b013e318212c177 6. Elgie R, Morselli PL. Social functioning in bipolar patients: the perception and perspective of patients, relatives and advocacy organizations – a review. Bipolar Disord (2007) 9:144–57. doi:10.1111/j.1399-5618.2007.00339.x 6. Elgie R, Morselli PL. Social functioning in bipolar patients: the perception and perspective of patients, relatives and advocacy organizations – a review. Bipolar Disord (2007) 9:144–57. doi:10.1111/j.1399-5618.2007.00339.x 5. Korkmaz B. Theory of mind and neurodevelopmental disorders of child- hood. Pediatr Res (2011) 69:101R–8R. doi:10.1203/PDR.0b013e318212c177 REFERENCES Socio-emotional processing and functioning of youth at high risk for bipolar disorder. J Affect Disord (2013) 148:112–7. doi:10.1016/j.jad.2012.08.016 h 20. Benito A, Lahera G, Herrera S, Muncharaz R, Benito G, Fernandez-Liria A, et al. Deficits in recognition, identification, and discrimination of facial emo- tions in patients with bipolar disorder. Rev Bras Psiquiatr (2013) 35:435–8. doi:10.1590/1516-4446-2013-1086 f 42. Wolf F, Brune M, Assion HJ. Theory of mind and neurocognitive func- tioning in patients with bipolar disorder. Bipolar Disord (2010) 12:657–66. doi:10.1111/j.1399-5618.2010.00854.x 21. Bora E, Vahip S, Gonul AS, Akdeniz F, Alkan M, Ogut M, et al. Evidence for theory of mind deficits in euthymic patients with bipolar disorder. Acta Psychiatr Scand (2005) 112:110–6. doi:10.1111/j.1600-0447.2005.00570.x 43. Duffy A. Toward a comprehensive clinical staging model for bipolar disorder: integrating the evidence. Can J Psychiatry (2014) 59:659–66. i 22. Cusi AM, Macqueen GM, McKinnon MC. Patients with bipolar disorder show impaired performance on complex tests of social cognition. Psychiatry Res (2012) 200:258–64. doi:10.1016/j.psychres.2012.06.021 44. Hasler G, Wolf A. Toward stratified treatments for bipolar disor- ders. Eur Neuropsychopharmacol (2015) 25:283–94. doi:10.1016/j. euroneuro.2014.12.006 45. Phillips ML, Kupfer DJ. Bipolar disorder diagnosis: challenges and future directions. Lancet (2013) 381:1663–71. doi:10.1016/S0140-6736(13)60989-7 23. Cusi AM, Nazarov A, Holshausen K, Macqueen GM, McKinnon MC. Systematic review of the neural basis of social cognition in patients with mood disorders. J Psychiatry Neurosci (2012) 37:154–69. doi:10.1503/ jpn.100179 i 46. Parker G, Graham R, Hadzi-Pavlovic D, McCraw S, Hong M, Friend P. Differentiation of bipolar I and II disorders by examining for differences in severity of manic/hypomanic symptoms and the presence or absence of psychosis during that phase. J Affect Disord (2013) 150:941–7. doi:10.1016/j. jad.2013.05.018 24. Inoue Y, Tonooka Y, Yamada K, Kanba S. Deficiency of theory of mind in patients with remitted mood disorder. J Affect Disord (2004) 82:403–9. doi:10.1016/j.jad.2004.04.004 h 25. Ioannidi N, Konstantakopoulos G, Sakkas D, Oulis P. The relationship of the- ory of mind with symptoms and cognitive impairment in bipolar disorder: a prospective study. Psychiatriki (2015) 26:17–27. 47. Leboyer M, Kupfer DJ. Bipolar disorder: new perspectives in health care and prevention. J Clin Psychiatry (2010) 71:1689–95. doi:10.4088/ JCP.10m06347yel 26. Kerr N, Dunbar RI, Bentall RP. Theory of mind deficits in bipolar affective dis- order. J Affect Disord (2003) 73:253–9. doi:10.1016/S0165-0327(02)00008-3 48. Bora E, Bartholomeusz C, Pantelis C. Meta-analysis of theory of mind (ToM) impairment in bipolar disorder. Psychol Med (2016):46:253–64. doi:10.1017/ S0033291715001993 f 27. REFERENCES 1. Green MF, Penn DL, Bentall R, Carpenter WT, Gaebel W, Gur RC, et al. Social cognition in schizophrenia: an NIMH workshop on definitions, assessment, and research opportunities. Schizophr Bull (2008) 34:1211–20. doi:10.1093/ schbul/sbm145 2. Frith CD, Frith U. Mechanisms of social cognition. Annu Rev Psychol (2011) 63:287–313. doi:10.1146/annurev-psych-120710-100449 3. Mathersul D, McDonald S, Rushby JA. Understanding advanced theory of mind and empathy in high-functioning adults with autism spectrum January 2016  |  Volume 6  |  Article 188 Frontiers in Psychiatry  |  www.frontiersin.org 17 Bipolar Disorder – Theory of Mind Mitchell and Young 7. Brune M, Brune-Cohrs U. Theory of mind  –  evolution, ontogeny, brain mechanisms and psychopathology. Neurosci Biobehav Rev (2006) 30:437–55. doi:10.1016/j.neubiorev.2005.08.001 7. Brune M, Brune-Cohrs U. Theory of mind  –  evolution, ontogeny, brain mechanisms and psychopathology. Neurosci Biobehav Rev (2006) 30:437–55. doi:10.1016/j.neubiorev.2005.08.001 29. McKinnon MC, Cusi AM, Macqueen GM. Impaired theory of mind performance in patients with recurrent bipolar disorder: moderating effect of cognitive load. Psychiatry Res (2010) 177:261–2. doi:10.1016/j. psychres.2010.02.004 8. Samame C, Martino DJ, Strejilevich SA. Social cognition in euthymic bipolar disorder: systematic review and meta-analytic approach. Acta Psychiatr Scand (2012) 125:266–80. doi:10.1111/j.1600-0447.2011.01808.x 30. Montag C, Ehrlich A, Neuhaus K, Dziobek I, Heekeren HR, Heinz A, et al. Theory of mind impairments in euthymic bipolar patients. J Affect Disord (2010) 123:264–9. doi:10.1016/j.jad.2009.08.017 9. McKinnon MC, Cusi AM, Macqueen GM. Psychological factors that may confer risk for bipolar disorder. Cogn Neuropsychiatry (2013) 18:115–28. doi :10.1080/13546805.2012.702505 j j 31. Olley AL, Malhi GS, Bachelor J, Cahill CM, Mitchell PB, Berk M. Executive functioning and theory of mind in euthymic bipolar disorder. Bipolar Disord (2005) 7(Suppl 5):43–52. doi:10.1111/j.1399-5618.2005.00254.x 10. Samame C. Social cognition throughout the three phases of bipolar disorder: a state-of-the-art overview. Psychiatry Res (2013) 210:1275–86. doi:10.1016/j. psychres.2013.08.012 32. Purcell AL, Phillips M, Gruber J. In your eyes: does theory of mind pre- dict impaired life functioning in bipolar disorder? J Affect Disord (2013) 151:1113–9. doi:10.1016/j.jad.2013.06.051 hi 11. Van Rheenen TE, Rossell SL. Phenomenological predictors of psychosocial function in bipolar disorder: is there evidence that social cognitive and emotion regulation abnormalities contribute? Aust N Z J Psychiatry (2014) 48:26–35. doi:10.1177/0004867413508452 33. Reynolds MT, Van Rheenen TE, Rossell SL. Theory of mind in first degree rel- atives of individuals with bipolar disorder. Psychiatry Res (2014) 219:400–2. doi:10.1016/j.psychres.2014.05.041 j y 34. Schenkel LS, Marlow-O’Connor M, Moss M, Sweeney JA, Pavuluri MN. REFERENCES Theory of mind and social inference in children and adolescents with bipolar disorder. Psychol Med (2008) 38:781–800. doi:10.1017/S0033291707002541 12. Samame C, Martino DJ, Strejilevich SA. An individual task meta-analysis of social cognition in euthymic bipolar disorders. J Affect Disord (2015) 173:146–53. doi:10.1016/j.jad.2014.10.055 h 13. Bora E, Yucel M, Pantelis C. Theory of mind impairment: a distinct trait- marker for schizophrenia spectrum disorders and bipolar disorder? Acta Psychiatr Scand (2009) 120:253–64. doi:10.1111/j.1600-0447.2009.01414.x 35. Schenkel LS, Chamberlain TF, Towne TL. Impaired theory of mind and psychosocial functioning among pediatric patients with type I versus type II bipolar disorder. Psychiatry Res (2014) 215:740–6. doi:10.1016/j. psychres.2013.10.025 14. Hoertnagl CM, Hofer A. Social cognition in serious mental illness. Curr Opin Psychiatry (2014) 27:197–202. doi:10.1097/YCO.0000000000000055 i 36. Shamay-Tsoory S, Harari H, Szepsenwol O, Levkovitz Y. Neuropsychological evidence of impaired cognitive empathy in euthymic bipolar disorder. J Neuropsychiatry Clin Neurosci (2009) 21:59–67. doi:10.1176/appi. neuropsych.21.1.59 15. Mercer L, Becerra R. A unique emotional processing profile of euthymic bipolar disorder? A critical review. J Affect Disord (2013) 146:295–309. doi:10.1016/j.jad.2012.10.030 37. Terrien S, Stefaniak N, Blondel M, Mouras H, Morvan Y, Besche-Richard C. Theory of mind and hypomanic traits in general population. Psychiatry Res (2014) 215:694–9. doi:10.1016/j.psychres.2013.12.042 16. Donohoe G, Duignan A, Hargreaves A, Morris DW, Rose E, Robertson D, et al. Social cognition in bipolar disorder versus schizophrenia: compara- bility in mental state decoding deficits. Bipolar Disord (2012) 14:743–8. doi:10.1111/bdi.12011 h 38. Van Rheenen TE, Rossell SL. Is the non-verbal behavioural emotion-pro- cessing profile of bipolar disorder impaired? A critical review. Acta Psychiatr Scand (2013) 128:163–78. doi:10.1111/acps.12125 17. Henderson AR. The impact of social cognition training on recovery from psychosis. Curr Opin Psychiatry (2013) 26:429–32. doi:10.1097/ YCO.0b013e3283642cf1 39. Van Rheenen TE, Rossell SL. Picture sequencing task performance indicates theory of mind deficit in bipolar disorder. J Affect Disord (2013) 151:1132–4. doi:10.1016/j.jad.2013.07.009 18. Weightman MJ, Air TM, Baune BT. A review of the role of social cognition in major depressive disorder. Front Psychiatry (2014) 5:179. doi:10.3389/ fpsyt.2014.00179 40. Van Rheenen TE, Meyer D, Rossell SL. Pathways between neurocognition, social cognition and emotion regulation in bipolar disorder. Acta Psychiatr Scand (2014) 130:397–405. doi:10.1111/acps.12295 19. Barrera A, Vazquez G, Tannenhaus L, Lolich M, Herbst L. Theory of mind and functionality in bipolar patients with symptomatic remission. Rev Psiquiatr Salud Ment (2013) 6:67–74. doi:10.1016/j.rpsm.2012.07.004 41. Whitney J, Howe M, Shoemaker V, Li S, Marie Sanders E, Dijamco C, et al. REFERENCES Age-related decrease in recognition of emotional facial and prosodic expressions. Emotion (2012) 12:529–39. doi:10.1037/a0026827 63. Wang Z, Su Y. Age-related differences in the performance of theory of mind in older adults: a dissociation of cognitive and affective components. Psychol Aging (2013) 28:284–91. doi:10.1037/a0030876 86. Murphy NA, Lehrfeld JM, Isaacowitz DM. Recognition of posed and spontaneous dynamic smiles in young and older adults. Psychol Aging (2010) 25:811–21. doi:10.1037/a0019888 64. Chung YS, Barch D, Strube M. A meta-analysis of mentalizing impairments in adults with schizophrenia and autism spectrum disorder. Schizophr Bull (2014) 40:602–16. doi:10.1093/schbul/sbt048 87. Fiorentini C, Viviani P. Is there a dynamic advantage for facial expressions? J Vis (2011) 11:1–15. doi:10.1167/11.3.17 88. Phillips L, Slessor G. Moving beyond basic emotions in aging research. J Nonverbal Behav (2011) 35:279–86. doi:10.1007/s10919-011-0114-5 65. Wellman HM, Cross D, Watson J. Meta-analysis of theory-of-mind development: the truth about false belief. Child Dev (2001) 72:655–84. doi:10.1111/1467-8624.00304 89. Ruffman T. Ecological validity and age-related change in emotion recogni- tion. J Nonverbal Behav (2011) 35:297–304. doi:10.1007/s10919-011-0116-3 66. Lagattuta KH, Kramer HJ, Kennedy K, Hjortsvang K, Goldfarb D, Tashjian S. Beyond Sally’s missing marble: further development in children’s under- standing of mind and emotion in middle childhood. Adv Child Dev Behav (2015) 48:185–217. doi:10.1016/bs.acdb.2014.11.005 90. Guastella AJ, Hermens DF, Van Zwieten A, Naismith SL, Lee RS, Cacciotti- Saija C, et al. Social cognitive performance as a marker of positive psychotic symptoms in young people seeking help for mental health problems. Schizophr Res (2013) 149:77–82. doi:10.1016/j.schres.2013.06.006 67. Garrido-Vasquez P, Jessen S, Kotz SA. Perception of emotion in psychiatric disorders: on the possible role of task, dynamics, and multimodality. Soc Neurosci (2011) 6:515–36. doi:10.1080/17470919.2011.620771 91. Lewandowski KE, Cohen BM, Keshavan MS, Ongur D. Relationship of neurocognitive deficits to diagnosis and symptoms across affective and non-affective psychoses. Schizophr Res (2011) 133:212–7. doi:10.1016/j. schres.2011.09.004 68. Achim AM, Guitton M, Jackson PL, Boutin A, Monetta L. On what ground do we mentalize? Characteristics of current tasks and sources of information that contribute to mentalizing judgments. Psychol Assess (2013) 25:117–26. doi:10.1037/a0029137 92. Rosen C, Grossman LS, Harrow M, Bonner-Jackson A, Faull R. Diagnostic and prognostic significance of Schneiderian first-rank symptoms: a 20-year longitudinal study of schizophrenia and bipolar disorder. Compr Psychiatry (2011) 52:126–31. doi:10.1016/j.comppsych.2010.06.005 69. McDonald S. Impairments in social cognition following severe traumatic brain injury. J Int Neuropsychol Soc (2013) 19:231–46. doi:10.1017/ S1355617712001506 93. Wilson S, Sponheim SR. REFERENCES Lahera G, Montes JM, Benito A, Valdivia M, Medina E, Mirapeix I, et al. Theory of mind deficit in bipolar disorder: is it related to aprevious history of psychotic symptoms? Psychiatry Res (2008) 161:309–17. doi:10.1016/j. psychres.2007.08.009 49. Frith CD, Corcoran R. Exploring ‘theory of mind’ in people with schizophre- nia. Psychol Med (1996) 26:521–30. doi:10.1017/S0033291700035601 50. Langdon R, Michie PT, Ward PB, McConaghy N, Catts SV, Coltheart M. Defective self and/or other mentalising in schizophrenia: a cognitive neuropsychological approach. Cogn Neuropsychiatry (1997) 2:167–93. doi:10.1080/135468097396324 y 28. Martino DJ, Strejilevich SA, Fassi G, Marengo E, Igoa A. Theory of mind and facial emotion recognition in euthymic bipolar I and bipolar II disorders. Psychiatry Res (2011) 189:379–84. doi:10.1016/j.psychres.2011.04.033 January 2016  |  Volume 6  |  Article 188 Frontiers in Psychiatry  |  www.frontiersin.org 18 Mitchell and Young Bipolar Disorder – Theory of Mind 51. Corcoran R, Mercer G, Frith CD. Schizophrenia, symptomatology and social inference: investigating “theory of mind” in people with schizophrenia. Schizophr Res (1995) 17:5–13. doi:10.1016/0920-9964(95)00024-G 72. Kucharska-Pietura K, Mortimer A. Can antipsychotics improve social cognition in patients with schizophrenia? CNS Drugs (2013) 27:335–43. doi:10.1007/s40263-013-0047-0 73. Ang GK, Pridmore S. Theory of mind and psychiatry: an introduction. Australas Psychiatry (2009) 17:117–22. doi:10.1080/10398560802375982 52. Baron-Cohen S, O’riordan M, Stone V, Jones R, Plaisted K. Recognition of faux pas by normally developing children and children with Asperger syn- drome or high-functioning autism. J Autism Dev Disord (1999) 29:407–18. doi:10.1023/A:1023035012436 74. Rodrigo MJ, Padron I, De Vega M, Ferstl EC. Adolescents’ risky decision-mak- ing activates neural networks related to social cognition and cognitive control processes. Front Hum Neurosci (2014) 8:60. doi:10.3389/fnhum.2014.00060 53. Baron-Cohen S, Wheelwright S, Hill J, Raste Y, Plumb I. The “reading the mind in the eyes” test revised version: a study with normal adults, and adults with Asperger syndrome or high-functioning autism. J Child Psychol Psychiatry (2001) 42:241–51. doi:10.1111/1469-7610.00715 75. Sandvik AM, Hansen AL, Johnsen BH, Laberg JC. Psychopathy and the ability to read the “language of the eyes”: divergence in the psychopathy construct. Scand J Psychol (2014) 55:585–92. doi:10.1111/sjop.12138 h 76. Fonagy P, Allison E. The role of mentalizing and epistemic trust in the ther- apeutic relationship. Psychotherapy (Chic) (2014) 51:372–80. doi:10.1037/ a0036505 54. Young RC, Biggs JT, Ziegler VE, Meyer DA. A rating scale for mania: reliabil- ity, validity and sensitivity. Br J Psychiatry (1978) 133:429–35. doi:10.1192/ bjp.133.5.429 77. Weinstein L, Perez-Rodriguez MM, Siever L. REFERENCES Personality disorders, attach- ment and psychodynamic psychotherapy. Psychopathology (2014) 47:425–36. doi:10.1159/000366135 55. Hamilton M. A rating scale for depression. J Neurol Neurosurg Psychiatry (1960) 23:56–62. doi:10.1136/jnnp.23.1.56 56. American Psychiatric Association. Diagnostic and Statistical Manual of Mental Disorders. Washington, DC: American Psychiatric Association (2013). 78. Brooks R, Meltzoff AN. Connecting the dots from infancy to childhood: a longitudinal study connecting gaze following, language, and explicit theory of mind. J Exp Child Psychol (2015) 130:67–78. doi:10.1016/j.jecp.2014.09.010 h 57. Hynes CA, Baird AA, Grafton ST. Differential role of the orbital frontal lobe in emotional versus cognitive perspective-taking. Neuropsychologia (2006) 44:374–83. doi:10.1016/j.neuropsychologia.2005.06.011 79. Moll H, Kane S, McGowan L. Three-year-olds express suspense when an agent approaches a scene with a false belief. Dev Sci (2015). doi:10.1111/ desc.12310 58. Shamay-Tsoory SG, Aharon-Peretz J, Levkovitz Y. The neuroanatomical basis of affective mentalizing in schizophrenia: comparison of patients with schizophrenia and patients with localized prefrontal lesions. Schizophr Res (2007) 90:274–83. doi:10.1016/j.schres.2006.09.020 80. McDonald S, Flanagan S, Rollins J, Kinch J. TASIT: a new clinical tool for assessing social perception after traumatic brain injury. J Head Trauma Rehabil (2003) 18:219–38. doi:10.1097/00001199-200305000-00001 59. Happe FG. An advanced test of theory of mind: understanding of story characters’ thoughts and feelings by able autistic, mentally handicapped, and normal children and adults. J Autism Dev Disord (1994) 24:129–54. doi:10.1007/BF02172093 81. Spunt RP, Adolphs R. Validating the why/how contrast for functional MRI studies of theory of mind. Neuroimage (2014) 99:301–11. doi:10.1016/j. neuroimage.2014.05.023 82. Yatham LN, Torres IJ, Malhi GS, Frangou S, Glahn DC, Bearden CE, et al. The international society for bipolar disorders-battery for assessment of neurocognition (ISBD-BANC). Bipolar Disord (2010) 12:351–63. doi:10.1111/j.1399-5618.2010.00830.x 60. Ratheesh A, Berk M, Davey CG, McGorry PD, Cotton SM. Instruments that prospectively predict bipolar disorder – a systematic review. J Affect Disord (2015) 179:65–73. doi:10.1016/j.jad.2015.03.025 h 61. Mitchell RL, Phillips LH. The overlapping relationship between emotion per- ception and theory of mind. Neuropsychologia (2015) 70:1–10. doi:10.1016/j. neuropsychologia.2015.02.018 83. Henry JD, Cowan DG, Lee T, Sachdev PS. Recent trends in testing social cognition. Curr Opin Psychiatry (2015) 28:133–40. doi:10.1097/ YCO.0000000000000139 84. Hunter EM, Phillips LH, Macpherson SE. Effects of age on cross-modal emotion perception. Psychol Aging (2010) 25:779–87. doi:10.1037/a0020528 62. Poletti M, Enrici I, Adenzato M. Cognitive and affective theory of mind in neurodegenerative diseases: neuropsychological, neuroanatomical and neu- rochemical levels. Neurosci Biobehav Rev (2012) 36:2147–64. doi:10.1016/j. neubiorev.2012.07.004 85. Lambrecht L, Kreifelts B, Wildgruber D. REFERENCES Systematic review of appropriate cognitive assessment instruments used in clinical trials of schizophrenia, major depressive disorder and bipolar disorder. Psychiatry Res (2014) 216:291–302. doi:10.1016/j.psychres.2014.02.014 100. Pickup GJ. Relationship between theory of mind and executive function in schizophrenia: a systematic review. Psychopathology (2008) 41:206–13. doi:10.1159/000125554 Res (2014) 216:291–302. doi:10.1016/j.psychres.2014.02.014 120. Wang YG, Roberts DL, Xu BH. Dissociation of understanding from applying others’ false beliefs in remitted schizophrenia: evidence from a comput- erized referential communication task. BMC Psychiatry (2013) 13:141. doi:10.1186/1471-244X-13-141 101. Bora E, Yucel M, Pantelis C. Theory of mind impairment in schizophrenia: meta-analysis. Schizophr Res (2009) 109:1–9. doi:10.1016/j.schres.2008.12.020 h 102. Biedermann F, Frajo-Apor B, Hofer A. Theory of mind and its relevance in schizophrenia. Curr Opin Psychiatry (2012) 25:71–5. doi:10.1097/ YCO.0b013e3283503624 h 121. Raust A, Daban C, Cochet B, Henry C, Bellivier F, Scott J. Neurocognitive performance as an endophenotype for bipolar disorder. Front Biosci (Elite Ed) (2014) 6:89–103. doi:10.2741/E694 ii 103. Gavilan Ibanez JM, Garcia-Albea Ristol JE. Theory of mind and language comprehension in schizophrenia. Psicothema (2013) 25:440–5. doi:10.7334/ psicothema2012.357 122. Reilly JL, Sweeney JA. Generalized and specific neurocognitive deficits in psychotic disorders: utility for evaluating pharmacological treatment effects and as intermediate phenotypes for gene discovery. Schizophr Bull (2014) 40:516–22. doi:10.1093/schbul/sbu013 hi 104. Bazin N, Brunet-Gouet E, Bourdet C, Kayser N, Falissard B, Hardy-Bayle MC, et al. Quantitative assessment of attribution of intentions to others in schizophrenia using an ecological video-based task: a comparison with manic and depressed patients. Psychiatry Res (2009) 167:28–35. doi:10.1016/j. psychres.2007.12.010 123. Bora E, Pantelis C. Theory of mind impairments in first-episode psychosis, individuals at ultra-high risk for psychosis and in first-degree relatives of schizophrenia: systematic review and meta-analysis. Schizophr Res (2013) 144:31–6. doi:10.1016/j.schres.2012.12.013 105. Caletti E, Paoli RA, Fiorentini A, Cigliobianco M, Zugno E, Serati M, et al. Neuropsychology, social cognition and global functioning among bipolar, schizophrenic patients and healthy controls: preliminary data. Front Hum Neurosci (2013) 7:661. doi:10.3389/fnhum.2013.00661 124. Brown EC, Tas C, Brune M. Potential therapeutic avenues to tackle social cognition problems in schizophrenia. Expert Rev Neurother (2012) 12:71–81. doi:10.1586/ern.11.183 125. Fiszdon JM, Reddy LF. Review of social cognitive treatments for psychosis. Clin Psychol Rev (2012) 32:724–40. doi:10.1016/j.cpr.2012.09.003 106. Doody GA, Gotz M, Johnstone EC, Frith CD, Owens DG. Theory of mind and psychoses. Psychol Med (1998) 28:397–405. 126. Kurtz MM, Richardson CL. Social cognitive training for schizophrenia: a meta-analytic investigation of controlled research. Schizophr Bull (2012) 38:1092–104. doi:10.1093/schbul/sbr036 107. REFERENCES Lahera G, Herrera S, Reinares M, Benito A, Rullas M, Gonzalez-Cases J, et al. Hostile attributions in bipolar disorder and schizophrenia contribute to poor social functioning. Acta Psychiatr Scand (2015) 131:472–82. doi:10.1111/ acps.12399 127. Lahera G, Benito A, Montes JM, Fernandez-Liria A, Olbert CM, Penn DL. Social cognition and interaction training (SCIT) for outpatients with bipolar disorder. J Affect Disord (2013) 146:132–6. doi:10.1016/j. jad.2012.06.032 108. Lee J, Altshuler L, Glahn DC, Miklowitz DJ, Ochsner K, Green MF. Social and nonsocial cognition in bipolar disorder and schizophrenia: relative levels of impairment. Am J Psychiatry (2013) 170:334–41. doi:10.1176/appi. ajp.2012.12040490 128. Savitz JB, Price JL, Drevets WC. Neuropathological and neuromorpho- metric abnormalities in bipolar disorder: view from the medial prefrontal cortical network. Neurosci Biobehav Rev (2014) 42:132–47. doi:10.1016/j. neubiorev.2014.02.008 109. Marjoram D, Gardner C, Burns J, Miller P, Lawrie SM, Johnstone EC. Symptomatology and social inference: a theory of mind study of schizophre- nia and psychotic affective disorder. Cogn Neuropsychiatry (2005) 10:347–59. doi:10.1080/13546800444000092 129. Gurung R, Prata DP. What is the impact of genome-wide supported risk variants for schizophrenia and bipolar disorder on brain structure and function? A systematic review. Psychol Med (2015) 45:2461–80. doi:10.1017/ S0033291715000537 110. Maróthi R, Kéri S. Intuitive physics and intuitive psychology (“theory of mind”) in offspring of mothers with psychoses. PeerJ (2014) 2:e330. doi:10.7717/peerj.330 130. Schurz M, Perner J. An evaluation of neurocognitive models of theory of mind. Front Psychol (2015) 6:1610. doi:10.3389/fpsyg.2015.01610 111. Pawlby S, Fernyhough C, Meins E, Pariante CM, Seneviratne G, Bentall RP. Mind-mindedness and maternal responsiveness in infant–mother interac- tions in mothers with severe mental illness. Psychol Med (2010) 40:1861–9. doi:10.1017/S0033291709992340 131. Townsend J, Altshuler LL. Emotion processing and regulation in bipolar disorder: a review. Bipolar Disord (2012) 14:326–39. doi:10.1111/j.1399-5618.2012.01021.x 112. Rossell SL, Van Rheenen TE. Theory of mind performance using a story comprehension task in bipolar mania compared to schizophrenia and healthy controls. Cogn Neuropsychiatry (2013) 18:409–21. doi:10.1080/13546805.20 12.725820 132. Atagun MI, Guntekin B, Masali B, Tulay E, Basar E. Decrease of event-related delta oscillations in euthymic patients with bipolar disorder. Psychiatry Res (2014) 223:43–8. doi:10.1016/j.pscychresns.2014.04.001 113. Rowland JE, Hamilton MK, Vella N, Lino BJ, Mitchell PB, Green MJ. Adaptive associations between social cognition and emotion regulation are absent in schizophrenia and bipolar disorder. Front Psychol (2013) 3:607. doi:10.3389/ fpsyg.2012.00607 133. Fung G, Deng Y, Zhao Q, Li Z, Qu M, Li K, et al. REFERENCES Dimensions underlying psychotic and manic symp- tomatology: extending normal-range personality traits to schizophrenia and bipolar spectra. Compr Psychiatry (2014) 55:1809–19. doi:10.1016/j. comppsych.2014.07.008 70. Pinkham AE. Social cognition in schizophrenia. J Clin Psychiatry (2014) 75(Suppl 2):14–9. doi:10.4088/JCP.13065su1.04 hf 71. Hempel RJ, Dekker JA, Van Beveren NJ, Tulen JH, Hengeveld MW. The effect of antipsychotic medication on facial affect recognition in schizophrenia: a review. Psychiatry Res (2010) 178:1–9. doi:10.1016/j.psychres.2008.07.025 94. Lindenmayer JP, Bossie CA, Kujawa M, Zhu Y, Canuso CM. Dimensions of psychosis in patients with bipolar mania as measured by the January 2016  |  Volume 6  |  Article 188 Frontiers in Psychiatry  |  www.frontiersin.org 19 Bipolar Disorder – Theory of Mind Mitchell and Young positive and negative syndrome scale. Psychopathology (2008) 41:264–70. doi:10.1159/000128325 positive and negative syndrome scale. Psychopathology (2008) 41:264–70. doi:10.1159/000128325 and speech disorganization in schizophrenia. Psychol Med (1999) 29:613–20. doi:10.1017/S0033291799008326 and speech disorganization in schizophrenia. Psychol Med (1999) 29:613–20. doi:10.1017/S0033291799008326 hf 95. Basso MR, Lowery N, Ghormley C, Ward T, Purdie R, Neel J, et  al. Neuropsychological impairment and psychosis in mania. J Clin Exp Neuropsychol (2009) 31:523–32. doi:10.1080/13803390802304516 115. Thaler NS, Allen DN, Sutton GP, Vertinski M, Ringdahl EN. Differential impairment of social cognition factors in bipolar disorder with and without psychotic features and schizophrenia. J Psychiatr Res (2013) 47:2004–10. doi:10.1016/j.jpsychires.2013.09.010 96. Ostergaard SD, Bertelsen A, Nielsen J, Mors O, Petrides G. The association between psychotic mania, psychotic depression and mixed affective epi- sodes among 14,529 patients with bipolar disorder. J Affect Disord (2013) 147:44–50. doi:10.1016/j.jad.2012.10.005 116. Thaler NS, Sutton GP, Allen DN. Social cognition and functional capacity in bipolar disorder and schizophrenia. Psychiatry Res (2014) 220:309–14. doi:10.1016/j.psychres.2014.08.035 117. Harvey PD, Wingo AP, Burdick KE, Baldessarini RJ. Cognition and disability in bipolar disorder: lessons from schizophrenia research. Bipolar Disord (2010) 12:364–75. doi:10.1111/j.1399-5618.2010.00831.x 97. Tiwari AK, Zai CC, Muller DJ, Kennedy JL. Genetics in schizophrenia: where are we and what next? Dialogues Clin Neurosci (2010) 12:289–303. 98. Cardno AG, Owen MJ. Genetic relationships between schizophrenia, bipolar disorder, and schizoaffective disorder. Schizophr Bull (2014) 40:504–15. doi:10.1093/schbul/sbu016 118. Andreou C, Bozikas VP. The predictive significance of neurocognitive factors for functional outcome in bipolar disorder. Curr Opin Psychiatry (2013) 26:54–9. doi:10.1097/YCO.0b013e32835a2acf 99. Sprong M, Schothorst P, Vos E, Hox J, Van Engeland H. Theory of mind in schizophrenia: meta-analysis. Br J Psychiatry (2007) 191:5–13. doi:10.1192/ bjp.bp.107.035899 119. Bakkour N, Samp J, Akhras K, El Hammi E, Soussi I, Zahra F, et al. 135. Moriguchi Y. The early development of executive function and its relation to social interaction: a brief review. Front Psychol (2014) 5:388. doi:10.3389/ fpsyg.2014.00388 Copyright © 2016 Mitchell and Young. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. Bipolar Disorder – Theory of Mind January 2016  |  Volume 6  |  Article 188 Frontiers in Psychiatry  |  www.frontiersin.org REFERENCES Distinguishing bipolar and major depressive disorders by brain structural morphometry: a pilot study. BMC Psychiatry (2015) 15:298. doi:10.1186/s12888-015-0685-5 134. Devine RT, Hughes C. Relations between false belief understanding and executive function in early childhood: a meta-analysis. Child Dev (2014) 85:1777–94. doi:10.1111/cdev.12237 114. Sarfati Y, Hardy-Bayle MC. How do people with schizophrenia explain the behaviour of others? A study of theory of mind and its relationship to thought January 2016  |  Volume 6  |  Article 188 Frontiers in Psychiatry  |  www.frontiersin.org 20 Bipolar Disorder – Theory of Mind Mitchell and Young Bipolar Disorder – Theory of Mind 135. Moriguchi Y. The early development of executive function and its relation to social interaction: a brief review. Front Psychol (2014) 5:388. doi:10.3389/ fpsyg.2014.00388 Conflict of Interest Statement: The authors declare that the research was con- ducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest. January 2016  |  Volume 6  |  Article 188 Frontiers in Psychiatry  |  www.frontiersin.org 21
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The assessment of quality of groundwater used for drinking by the population of the Republic of Dagestan, Russia
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Юг России: экология, развитие  2023 Т. 18 N  2 Юг России: экология, развитие  2023 Т. 18 N  2 Геоэкология Оригинальная статья / Original article  УДК 504:43; 550.4; 614:79   DOI: 10.18470/1992‐1098‐2023‐2‐92‐101 Оригинальная статья / Original article  УДК 504:43; 550 4; 614:79 Д ; ; DOI: 10.18470/1992‐1098‐2023‐2‐92‐101 Оценка качества подземных вод, используемых в  хозяйственно‐питьевых целях в Республике Дагестан    Тамила О. Абдулмуталимова1,2, Омари М. Рамазанов1, Алибек Б. Алхасов1, Иса М. Газалиев2  1Институт проблем геотермии и возобновляемой энергетики – филиал Объединённого института высоких температур   Российской академии наук, Махачкала, Россия   2Институт геологии Дагестанского федерального исследовательского центра Российской академии наук, Махачкала, Россия Формат цитирования Результаты. В  некоторых  горных  населенных  пунктах  выявлены  повышенные  значения  жесткости  (до  14),  а  также  практически  повсеместно  дефицит  йодидов. В  подземных  водах  равнинных  населенных  пунктов  выявлено  повышенное  содержание  фенолов,  кадмия и мышьяка. Получена 26 октября 2022 г. Прошла рецензирование 2 февраля 2023 г. Принята 6 февраля 2023 г. Заключение. Использование  населением  подземных  вод  для  питьевых  целей  в  горных  районах  возможно  с  предварительным  проведением  соответствующих  мероприятий  по  смягчению  воды  и  профилактических  мероприятий  среди  населения,  связанных  с  восполнением дефицита йода. Подземные воды равнинных районов  не  соответствуют  гигиеническим  требованиям  по  содержанию  мышьяка, кадмия и фенолов, а канцерогенные риски для населения  находятся на уровне, недопустимом для населения. ©  2023  Авторы.  Юг  России:  экология,  развитие.  Это  статья  открытого  доступа  в  соответствии  с  условиями  Creative  Commons  Attribution  License,  которая  разрешает  использование,  распространение  и  воспроизведение  на  любом  носителе  при  условии  правильного цитирования оригинальной работы. Резюме Тамила О. Абдулмуталимова, кандидат  биологических наук, старший научный  сотрудник, лаборатория энергетики, Институт  проблем геотермии и возобновляемой  энергетики ‐ филиал Объединённого института  высоких температур Российской академии наук;  367030 Россия, г. Махачкала, просп. И. Шамиля, 39а. Цель. Особенности  геологического  строения  региона  обуславливают  разнообразие  химического  состава  подземных  вод,  представленных  родниками  в  горной  части  республики  до  артезианских  вод  в  равнинной части. Содержание некоторых контаминантов в  питьевых  водах может сказываться на здоровье населения и иметь негативные  последствия. Целью  работы  является  проведение  сравнительного  анализа  региональных  особенностей  подземных  вод  и  обоснование  соответствия  их  гигиеническим  нормативам,  предъявляемым  к  качеству питьевых вод. Тамила О. Абдулмуталимова, кандидат  биологических наук, старший научный  сотрудник, лаборатория энергетики, Институт  проблем геотермии и возобновляемой  энергетики ‐ филиал Объединённого института  высоких температур Российской академии наук;  367030 Россия, г. Махачкала, просп. И. Шамиля, 39а. Тел. +79034244344  Email tamila4@mail.ru  ORCID https://orcid.org/0000‐0003‐4743‐6154 Email tamila4@mail.ru  ORCID https://orcid.org/0000‐0003‐4743‐6154 Email tamila4@mail.ru  ORCID https://orcid.org/0000‐0003‐4743‐6154 Материалы  и  методы. Более  500  проб  питьевой  воды  отобраны  на  территории  республики  и  проанализированы  в  аналитических  лабораториях  Института  проблем  геотермии  и  возобновляемой  энергетики – филиала Объединённого института высоких температур  Российской  академии  наук  и  Института  геологии  Дагестанского  федерального исследовательского центра Российской академии наук. Оценки  канцерогенных  рисков  для  здоровья  населения  проведена  согласно Руководству 2.1.10.1920‐04. Формат цитирования  Абдулмуталимова Т.О., Рамазанов О.М., Алхасов  А.Б., Газалиев И.М. Оценка качества подземных  вод, используемых в хозяйственно‐питьевых  целях в Республике Дагестан // Юг России:  экология, развитие. 2023. Т.18, N 2. C. 92‐101. DOI: 10.18470/1992‐1098‐2023‐2‐92‐101 Ключевые слова Подземные  воды,  питьевое  водоснабжение,  геогенные  химические  элементы,  гигиенический  норматив,  канцерогенные  риски  здоровью  населения, Республика Дагестан. ©  2023  Авторы. Юг  России:  экология,  развитие. Это  статья  открытого  доступа  в  соответствии  с  условиями  Creative  Commons  Attribution  License,  которая  разрешает  использование,  распространение  и  воспроизведение  на  любом  носителе  при  условии  правильного цитирования оригинальной работы. ecodag.elpub.ru/ugro/issue/current 92 South of Russia: ecology, development  2023 Vol. 18 no.2 Geoecology How to cite this article Abdulmutalimova T.O., Ramazanov O.M., Alhasov  A.B., Gazaliev I.M. The assessment of quality of  groundwater used for drinking by the population of  the Republic of Dagestan, Russia. South of Russia:  ecology, development. 2023, vol. 18, no. 2, pp. 92‐ 101. (In Russian) DOI: 10.18470/1992‐1098‐2023‐2‐ 92‐101 Results. In some mountainous settlements increased values of hardness  (up to 14) were revealed, as well as iodide deficiency almost everywhere. In the underground waters of lowland settlements, an increased content  of phenols, cadmium and arsenic was revealed. Received 26 October 2022  Revised 2 February 2023  Accepted 6 February 2023 Received 26 October 2022  Revised 2 February 2023  Accepted 6 February 2023 Conclusion. The  use  of  groundwater  by  the  population  for  drinking  purposes  in  mountainous  areas  is  possible  with  the  preliminary  implementation of appropriate water softening measures and preventive  measures  among  the  population  related  to  the  replenishment  of  iodine  deficiency. The underground waters of the lowland areas do not meet the  hygienic requirements for content of arsenic, cadmium and phenols and  the carcinogenic risks for the population are at a level unacceptable for  the population. Email tamila4@mail.ru  ORCID https://orcid.org/0000‐0003‐4743‐6154 Email tamila4@mail.ru  ORCID https://orcid.org/0000‐0003‐4743‐6154 Email tamila4@mail.ru  ORCID https://orcid.org/0000‐0003‐4743‐6154 Materials and methods. More than 500 samples of drinking water were  taken  on  the  territory  of  the  republic  and  analysed  in  the  analytical  laboratories  of  the  Institute  for  Problems  of  Geothermy  and  Renewable  Energy,  a  branch  of  the  Joint  Institute  for  High  Temperatures  of  the  Russian Academy of Sciences and the Institute of Geology of the Dagestan  Federal Research Center of the Russian Academy of Sciences. Assessment  of carcinogenic risks to public health was carried out in accordance with  Guideline 2.1.10.1920‐04. Abstract Tamila O. Abdulmutalimova, PhD in Biology, Senior  Researcher, Laboratory of Geoenergetics, Institute  of Geothermal Problems and Renewable Energy,  Branch of Joint Institute of High Temperatures,  Russian Academy of Sciences; 39a Prospect                I. Shamilya, Makhachkala, Russia, 367030. Tel. +79034244344 Aim. Features  of  the  geological  structure  of  the  region  determine  the  diversity  of  the  chemical  composition  of  groundwater,  represented  by  springs in the mountainous part of the Republic of Dagestan and artesian  waters in the plains. The content of some contaminants in drinking water  can affect public health and have negative consequences. The purpose of  the  work  is  to  conduct  a  comparative  analysis  of  the  regional  characteristics  of  groundwater  and  substantiate  their  compliance  with  hygienic standards for the quality of drinking water. © 2023 The authors. South of Russia: ecology, development. This is an open access article under the terms of the Creative Commons  Attribution License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. ВВЕДЕНИЕ ресурсов  страны  и  обеспечивают  около  20%  всех  потребностей  страны  в  хозяйственно‐питьевой  воде. Прогнозные  эксплуатационные  ресурсы  питьевых  (пресных и солоноватых) подземных вод, оценённых по  бассейнам  рек,  составляют  317,2  км3  в  год. Из  подземных  гидрогеологических  резервуаров  ежед‐ невно  добывается  по  40  млн  м3  воды  (14,6  млрд  м3  в  год)  и  этой  водой  обеспечиваются  потребности  60%  городского  и  85%  сельского  населения. Наиболее  удобны  для  этих  целей  воды  артезианских  бассейнов,  из  которых  они  подаются  с  напором  при  помощи  скважин [10]. ВВЕДЕНИЕ  Подземные  воды,  характеризуясь  особыми  условиями  миграции и разнообразными условиями формирования  химического  состава,  являются  составной  частью  единой гидросферы Земли. В настоящее время пресные  подземные  воды  играют  значительную  роль  в  хозяйственно‐питьевом  водоснабжении  населения  многих  стран. При  этом  отмечается  тенденция  к  увеличению  использования  подземных  вод  для  водоснабжения. Это  объясняется  тем,  что  подземные  воды,  как  источник  водоснабжения,  имеют  ряд  преимуществ по сравнению с поверхностными водами. Подземные  воды,  как  правило,  обладают  лучшим  качеством, более надежно защищены от загрязнения и  заражения,  меньше  подвержены  сезонным  и  многолетним  колебаниям  и  в  большинстве  случаев  их  использование не требует дорогостоящих мероприятий  по водоочистке. Дагестан, как один из самых водообеспеченных  регионов страны, обладает достаточными прогнозными  ресурсами  пресных  подземных  вод  хозяйственно‐ питьевого и производственно‐технического назначения. Подземные  воды  играют  существенную  роль  в  водоснабжении  сельских  населенных  пунктов  респуб‐ лики  (62%)  и,  частично,  городов  Дербент,  Кизляр,  Хасавюрт,  Буйнакск,  Южно‐Сухокумск  (12–50%). Доля  подземных  вод  в  общем  балансе  хозяйственно‐питье‐ вого водоснабжения в 2021г. составила более 27% [11]. На  формирование  качественного  состава  подземных  вод  влияют  геолого‐структурные  особенности  района,  его  металлогения,  литогео‐ химическая  специализация  горных  пород,  литолого‐ минералогические  особенности,  а  также  физико‐ химические  условия  миграции  элементов  и  их  комплексных соединений. По  состоянию  на  01.01.2022г. по  предвари‐ тельным  данным  государственного  баланса  запасов  разведаны  и  оценены  56  месторождений  (участков)  подземных  вод  с  суммарными  утвержденными  запасами  в  количестве  324,13  тыс. м3/сут,  в  том  числе  около  половины  запасов  (134  тыс. м3/сут)  –  для  водоснабжения  таких  городов,  как  Кизляр,  Дербент,  Буйнакск и Хасавюрт. Согласно данным статистической  отчетности  (форма  №  4‐ЛС  и  2‐ТП  «Водхоз»),  на  территории республики суммарная добыча подземных  вод  составила  234,14  тыс. м3/сут,  в  том  числе  на  месторождениях  57,21  тыс. м3/сут  (в  эксплуатации  находилось 40 месторождений (участков), на участках с  неутвержденными  запасами  –  176,93  тыс. м3/сут. Степень освоения запасов составила 17,7% [12; 13]. В мировом масштабе использование подземных  вод покрывает примерно 50% потребности в питьевой  воде  и  43%  потребности  орошения,  а  экономический  вклад подземных вод в сельское хозяйство оценивается  в  230  млрд  долл. США  в  год. Key Words y Groundwater,  drinking  water  supply,  natural  chemical  elements,  permissible level, human health, Republic of Dagestan. © 2023 The authors. South of Russia: ecology, development. This is an open access article under the terms of the Creative Commons  Attribution License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. ecodag.elpub.ru/ugro/issue/current ecodag.elpub.ru/ugro/issue/current 93 Юг России: экология, развитие  2023 Т. 18 N  2 Т.О. Абдулмуталимова и др. ВВЕДЕНИЕ С  развитием  мировой  экономики  спрос  на  пресную  воду  растет,  а  загряз‐ ненные  пресные  поверхностные  источники  не  удовлетворяют всех потребностей мирового хозяйства. Как  показали  документы  Всемирного  саммита  в  Йоханнесбурге  (2002),  Третьего  Всемирного  водного  форума  (2003–2022  гг.),  а  также  предложенная  Европейским  Союзом,  так  называемая,  Водная  инициатива,  внимание  мировой  общественности  все  больше  привлекают  проблемы  качества  и  рациона‐ льного  использования  водных  ресурсов. Растущая  техногенная  нагрузка  на  окружающую  среду,  стремительное уменьшение запасов питьевой воды на  планете,  ухудшение  ее  качества  сказываются  на  здоровье  людей,  разнообразии  животного  и  растительного  мира. Известно,  что  основными  загрязняющими подземные воды веществами являются  фенолы,  нефтепродукты,  соединения  меди,  цинка,  нитратный  азот,  мышьяк,  ртуть,  марганец  и  т.д. [1–4],  которые образуются в результате деятельности различ‐ ных  предприятий  и  функционирования  населенных  пунктов [5; 6]. Рост городов и стремительное развитие  промышленности  уже  в  XX  веке  привели  Россию  к  довольно  сложной  ситуации  в  отношении  качества  питьевых  вод. Поэтому  антропогенное  воздействие  является  главной  причиной  снижения  биосферных  функций,  изменения  физического  и  химического  состояния подземных вод [7]. В  структуре  подземных  вод  Дагестана  следует  выделить южную горную часть и северную равнинную, в  которых  сосредоточена  основная  их  масса. Подземные  воды  горной  части  оцениваются  модулем  родникового  стока. Подземные  воды  равнинных  территорий  представлены высоконапорными артезианскими водами,  входящими в состав крупнейшего резервуара пресных вод  Восточно‐Предкавказского артезианского бассейна [14]. Благополучная в целом по республике ситуация с  количественной  обеспеченностью  водопотребности  ресурсами  пресных  подземных  вод  омрачается  фактами  загрязнения  подземной  гидросферы  некоторыми  вредными  компонентами,  нерациональным  водополь‐ зованием  и  большой  вероятностью  проникновения  в  водоносные  пласты  высокоминерализованных  вод  глубоких горизонтов с содержанием токсичных элементов  [15]. Зачастую концентрации контаминантов оказываются  выше  установленных  гигиенических  нормативов  (ГН),  предъявляемых к качеству питьевой воды. Общая  откартированная  площадь  загрязнения  подземных  вод  в  пределах  Республики  Дагестан  составляет 3,8 тыс. км2 [12]. Во  многих  европейских  странах:  Австрия,  Бельгия,  Германия,  Венгрия,  Дания,  Румыния,  Швей‐ цария использование подземных вод превышает 70% от  общего  водопотребления. Россия  обладает  огромным  водно‐ресурсным потенциалом,  масштабы и основные  характеристики  которого  во  многом  уникальны. 20%  мировых ресурсов пресной воды (без учета ледников и  подземных  вод)  приходится  на  Россию  [8;  9]. Подзем‐ ные  воды  составляют  значительную  часть  водных В ходе проведенных исследований было выявлено  повышенное  содержание  некоторых  токсичных  компо‐ нентов, дифференцированных по классу опасности: I – чрезвычайно опасные – мышьяк; II – высокоопасные – кадмий, бром, кремний, бор, барий;  III – опасные – марганец, железо, аммоний; ecodag.elpub.ru/ugro/issue/current 94 South of Russia: ecology, development  2023 Vol. 18 no.2 T.O. Abdulmutalimova et al. IV  –  умеренно  опасные  –  фенолы,  сульфаты,  общая  жесткость воды. МАТЕРИАЛЫ И МЕТОДЫ ИССЛЕДОВАНИЯ Исследования  заключаются  в  проведении  полевых  и  лабораторных  работ. В  ходе  полевых  работ  были  отобраны  образцы  питьевой  подземной  воды  в  населённых  пунктах  Республики  Дагестан,  а  также  проанализированы  литературные  источники  Института  геологии [12; 15] и аналитического центра коллективного  пользования  ДФИЦ  РАН  [16;  17]  по  качеству  подземных  водоисточников,  что  позволило  сопоставить  данные  и  получить полную картину качественного состава питьевых  подземных  вод  республики. Сравнение  полученных  результатов  с  нормативными  требованиями,  предъяв‐ ляемых  к  качеству  питьевой  воды  [18–20],  позволило  выявить несоответствие по некоторым компонентам. Исследования  заключаются  в  проведении  полевых  и  лабораторных  работ. В  ходе  полевых  работ  были  отобраны  образцы  питьевой  подземной  воды  в  населённых  пунктах  Республики  Дагестан,  а  также  проанализированы  литературные  источники  Института  геологии [12; 15] и аналитического центра коллективного  пользования  ДФИЦ  РАН  [16;  17]  по  качеству  подземных  водоисточников,  что  позволило  сопоставить  данные  и  получить полную картину качественного состава питьевых  подземных  вод  республики. Сравнение  полученных  результатов  с  нормативными  требованиями,  предъяв‐ ляемых  к  качеству  питьевой  воды  [18–20],  позволило  выявить несоответствие по некоторым компонентам. В  ходе  данного  исследования  образцы  воды,  используемой  населением  для  питьевых  целей,  отбирались  непосредственно  из  скважин и  впоследствии  доставлялись  в  аналитическую  лабораторию  Института  проблем  геотермии  и  возобновляемой  энергетики  –  филиала  Объединенного  института  высоких  температур  Российской  академии  наук  (ИПГВЭ  ОИВТ  РАН)  для  проведения  соответствующих  анализов. На  протяжении   5 лет (2015–2019 гг.) в разные сезоны года были отобраны  более 500 проб питьевой воды с целью оценки динамики  изменения  концентраций  некоторых  контаминантов  и  влияния  сезонных  изменений  на  качественный  состав  подземных вод. Следует отметить, что все обнаруженные токсич‐ ные  элементы  имеют  природное  происхождение   [23–25]. Точное  объяснение  причин  их  нахождения  в  подземных водах на сегодняшний день неизвестно, но,  предположительно,  фенолы,  обнаруженные  в  Ногайс‐ ком  районе,  могут  быть  связаны  с  месторождениями  термальных  вод  и  глубинными  тектоническими  разломами  в  этой  области,  которая  характеризуется  сейсмичностью. А  возникновение  кадмия  и  мышьяка,  вероятно, связано с минералами, в состав которых они  входят. Следует  также  отметить,  что  распространение  фенола и кадмия имеет более локальный характер, в то  время как мышьяк был обнаружен в 97% образцов. При  проведении  оценки  канцерогенных  рисков  для здоровья населения согласно Руководству 2.1.10.1920‐ 04 [21] использовались данные, полученные в результате  химического  анализа  и  анкетирования  населения   (100  человек),  в  ходе  которого  выявлены  региональные  факторы водопотребления. Учитывая,  что  мышьяк  относится  к  I  группе  опасности  и  является  доказанным  канцерогеном,  было  проведено  исследование  его  содержания  в  питьевых  подземных  водах. С  помощью  геоинформационных  систем  была  составлена  карта  пространственного  распространения  мышьяка  с  ранжированием  по  уровню  его  содержания  (рис. 4). ВВЕДЕНИЕ практически во всех проанализированных образцах, что  подтверждает  эндемичность  региона  по  такому  заболеванию,  как  диффузный,  или  узловой  зоб. Проблему  дефицита  йода  можно  решить  употреб‐ лением в пищу йод содержащих продуктов, в частности  йодированной  соли,  а  уменьшение  жесткости  возможно  благодаря  использованию  смягчающих  фильтров. Таким  образом,  использование  подземных  вод  в  горной  части  республики  допустимо,  однако  в  некоторых районах необходимо проведение мероприя‐ тий среди населения по восполнению дефицита йода, а  также  информирование  населения  о  необходимости  использования фильтров для смягчения воды перед её  употреблением. Согласно  ВОЗ,  80%  заболеваний  вызвано  потреблением  некачественной  питьевой  воды. И,  очевидно,  что  изучение  качества  питьевой  воды,  проведение  мероприятий  по  его  улучшению  обуславли‐ вает  санитарно‐эпидемиологическое  благополучие  населения. Целью  настоящего  исследования  является  оценка  качества  подземных  вод  Дагестана,  используемых  населением  в  качестве  источников  хозяйственно‐ питьевого водоснабжения в аспекте влияния на здоровье  населения. Задачами исследования явились: Анализ  данных  по  качеству  питьевой  воды,  образцы  которой  были  отобраны  в  артезианских  скважинах равнинного Дагестана, выявил повышенные  концентрации  мышьяка,  кадмия  и  фенолов  (рис. 1–3). Обнаруженные  концентрации  не  вызывают  острого  токсического  воздействия  на  организм  человека,  однако  при  длительном  воздействии  даже  малых  доз  возможно  возникновение  патологических  изменений. Так,  например,  при  длительном  пероральном  поступ‐ лении  кадмия  возможно  нарушение  функции  почек. Токсическое  воздействие  фенолов  сказывается  на  желудочно‐кишечном  тракте,  центральной  нервной  системе  и  способно  вызывать  нарушения  в  развитии  детей. Наибольшую  обеспокоенность  вызывает  мышьяк,  обнаруженный  практически  во  всех  исследо‐ ванных образцах питьевой воды, что свидетельствует о  повсеместном  загрязнении  подземных  вод. Мышьяк  относится к 1 группе канцерогенов и при хроническом  пероральном  воздействии  вызывает  ряд  системных  нарушений  в  организме  человека,  вплоть  до  развития  злокачественных  новообразований  [22]. Таким  образом,  население  Северного  Дагестана  общей  численностью  более  700  тыс. человек  вынуждено  на  протяжении  длительного  времени  использовать  эти  воды  для  питьевых  целей  и  подвергается  риску  развития ряда заболеваний. ‐  оценка  качества  подземных  вод,  используемых  населением Дагестана для питьевых нужд; населением Дагестана для питьевых нужд; ‐ выявление наиболее опасных контаминантов; ‐оценка  канцерогенных  рисков  здоровью  населения  при  использовании  подземных  вод  для  питьевых нужд. МАТЕРИАЛЫ И МЕТОДЫ ИССЛЕДОВАНИЯ Среднее  содержание  мышьяка  превышает допустимый норматив в 19 раз, максимальное  содержание  –  в  50  раз. Пространственный  анализ  распространения  мышьяка  позволяет  выявить  высокую  контрастность его гидрохимических аномалий [25]. ecodag.elpub.ru/ugro/issue/current ПОЛУЧЕННЫЕ РЕЗУЛЬТАТЫ И ИХ ОБСУЖДЕНИЕ Анализ  образцов  питьевой  воды  в  горной  части  Дагестана  и  сопоставление  с  результатами  анализов,  полученных  другими  исследователями,  выявил  незна‐ чительные  повышенные  значения  жесткости,  суль‐ фатов,  а  также  дефицит  содержания  йодидов,  калия,  магния,  кальция,  фторидов. По  всем  остальным  показателям подземные воды отвечают гигиеническим  требованиям,  предъявляемым  к  питьевой  воде. Следует  отметить,  что  дефицит  йода  наблюдается ecodag.elpub.ru/ugro/issue/current 95 Юг России: экология, развитие  2023 Т. 18 N  2 Т.О. Абдулмуталимова и др. Т.О. Абдулмуталимова и др. Юг России: экология, развитие  2023 Т. 18 N  2      Рисунок 1. Содержание кадмия в образцах питьевой воды в населенных пунктах   Северного Дагестана (ГН – 0,001 мг/л)  Figure 1. Cadmium concentration in drinking water samples from Northern Dagestan   districts (hygienic standard – 0.001 mg/L)      Рисунок 2. Содержание фенолов в образцах питьевой воды в населенных пунктах   Северного Дагестана (ГН – 0,001 мг/л)  Figure 2. Phenol concentration in drinking water samples from Northern Dagestan   districts (hygienic standard – 0.001 mg/L)    Э б К Рисунок 1. Содержание кадмия в образцах питьевой воды в населенных пунктах   Северного Дагестана (ГН – 0,001 мг/л)  Figure 1. Cadmium concentration in drinking water samples from Northern Dagestan   districts (hygienic standard – 0.001 mg/L) Рисунок 2. Содержание фенолов в образцах питьевой воды в населенных пунктах   Северного Дагестана (ГН – 0,001 мг/л)  Figure 2. Phenol concentration in drinking water samples from Northern Dagestan   districts (hygienic standard – 0.001 mg/L) Рисунок 2. Содержание фенолов в образцах питьевой воды в населенных пункта Северного Дагестана (ГН – 0,001 мг/л)  Figure 2. Phenol concentration in drinking water samples from Northern Dagestan   districts (hygienic standard – 0.001 mg/L) Канцерогенная  опасность  мышьяка  рассчитана  на  основе  индивидуальных  канцерогенных  рисков  с  учётом  его  среднесуточного  поступления. Результаты  индивидуальных  канцерогенных  рисков  приведены  в  таблице 2. Предварительно был проведен опрос среди  экспонированного  населения  с  целью  выявления  региональных  факторов  водопотребления,  которые  использовались в расчётах. Экспонированная  часть  населения  была  также  дифференцирована по уровню содержания мышьяка в  питьевой  воде. Большая  часть  населения  потребляет  питьевую  воду  с  содержанием  мышьяка  с  превыше‐ нием ГН до 5 раз и около 3% населения используют для  питья воду с содержанием мышьяка в 40–50 раз выше  допустимого норматива (табл. 1). Превышение  гигиенического  норматива  в  20  и  более раз выявлено в 12 населенных пунктах с общей  численностью населения 15,8 тыс. человек. ecodag.elpub.ru/ugro/issue/current 96 South of Russia: ecology, development  2023 Vol. 18 no.2 T.O. Abdulmutalimova et al. South of Russia: ecology, development  2023 Vol. 18 no.2  T.O. Abdulmutalimova et al. Рисунок 3. ПОЛУЧЕННЫЕ РЕЗУЛЬТАТЫ И ИХ ОБСУЖДЕНИЕ – индивидуальный   дополнительный канцерогенный риск при среднем значении содержания мышьяка в питьевой воде  Note: ICR min – individual cancer risk (As content – 0.01 mg/L); ICR max – individual cancer risk (As content – 0.5 mg/L) ICR medium – individual cancer risk (As content – 0.09 mg/L) воде  0,01–0,5  мг/л)  популяционные  канцерогенные  риски для населения численностью 309,7 тыс. человек  при наиболее низких и высоких концентрациях составят  от 2 до 95 дополнительных случаев рака в год. Общий  популяционный  канцерогенный  риск  для  населения  исследуемых  районов  при  средней  концентрации  мышьяка  (0,19  мг/л)  в  питьевой  воде  составит   36  дополнительных  случаев  заболеваний  в  год. Фактически  численность  населения  Северного  Дагес‐ тана,  потребляющего  питьевую  воду  с  высоким  содержанием  мышьяка,  значительно  выше,  и  при  экстраполяции  данных  на  всё  население  популя‐ ционные риски также будут на порядок выше. воде  0,01–0,5  мг/л)  популяционные  канцерогенные  риски для населения численностью 309,7 тыс. человек  при наиболее низких и высоких концентрациях составят  от 2 до 95 дополнительных случаев рака в год. Общий  популяционный  канцерогенный  риск  для  населения  исследуемых  районов  при  средней  концентрации  мышьяка  (0,19  мг/л)  в  питьевой  воде  составит   36  дополнительных  случаев  заболеваний  в  год. Фактически  численность  населения  Северного  Дагес‐ тана,  потребляющего  питьевую  воду  с  высоким  содержанием  мышьяка,  значительно  выше,  и  при  экстраполяции  данных  на  всё  население  популя‐ ционные риски также будут на порядок выше. При содержании мышьяка в питьевой воде до 0,2 мг/л,  что  в  20  раз  превышает  допустимый  гигиенический  норматив,  индивидуальный  канцерогенный  риск  нахо‐ дится на уровне 10 ‐3, свыше 0,2 мг/л – на уровне 10 ‐2. Согласно  классификации  уровней  рисков,  величины  индивидуальных  рисков  находятся  на  уровне,  недопустимом для населения. Кроме  того,  учитывая  численность  прожи‐ вающего на исследуемой территории населения, были  рассчитаны  популяционные  канцерогенные  риски  для  выделенных  субпопуляций  в  виде  ожидаемого  числа  дополнительных  случаев  онкологических  заболеваний  в  год. Полученные  результаты  расчёта  популяционных  канцерогенных  рисков  позволяют  выявить  субпопу‐ ляции  с  высоким  и  низким  уровнями  рисков. Для  субпопуляции  численностью  108  тысяч  человек,  проживающей на территории с содержанием мышьяка  в питьевой воде в 10–19 раз выше допустимого уровня,  характерен  наибольший  популяционный  канцеро‐ генный  риск,  который  составляет  от  7  до  13  допол‐ нительных  случаев  рака  в  год  в  данной  популяции. Низкие  показатели  популяционных  канцерогенных  рисков (примерно 1 случай рака в год) характерны для  субпопуляции,  численностью  около  17  тыс. человек  и  потребляющей  воду  с  содержанием  мышьяка  выше  допустимого уровня в 5–9 раз. ПОЛУЧЕННЫЕ РЕЗУЛЬТАТЫ И ИХ ОБСУЖДЕНИЕ Содержание мышьяка в образцах питьевой воды в населенных пунктах   Северного Дагестана (ГН – 0,01 мг/л)  Figure 3. Arsenic concentration in drinking water samples from Northern Dagestan   districts (hygienic standard – 0.01 mg/L) Рисунок 3 Содержание мышьяка в образцах питьевой воды в населенных пунктах Рисунок 3. Содержание мышьяка в образцах питьевой воды в населенных пунктах Северного Дагестана (ГН – 0,01 мг/л)  Figure 3. Arsenic concentration in drinking water samples from Northern Dagestan   districts (hygienic standard – 0.01 mg/L) ecodag elpub ru/ugro/issue/current 97     Рисунок 4. Пространственное распространение мышьяка на территории Северного Дагестана  Figure 4. Arsenic distribution in the Northern Dagestan area Рисунок 4. Пространственное распространение мышьяка на территории Северного Дагестана  Figure 4. Arsenic distribution in the Northern Dagestan area Рисунок 4. Пространственное распространение мышьяка на территории Северного Дагестана  Figure 4. Arsenic distribution in the Northern Dagestan area 97 Юг России: экология, развитие  2023 Т. 18 N  2 Т.О. Абдулмуталимова и др. Таблица 1. Содержание мышьяка в питьевой воде из подземных источников водоснабжения   и численность экспонированного населения  Table 1. Arsenic contamination in groundwater used for drinking and the exposed population  №  Содержание  мышьяка в питьевой  воде, мг/л  (ГН 0,01мг/л)  Arsenic contamination  in drinking water, mg/L  (Hygienic standard   0,01 mg/L)  Частота  распределения  концентраций  мышьяка,  %  Frequency of arsenic  occurrence in water  samples, %   Численность  экспонированного  населения,  тыс. чел. Exposed population,  thousand people  Доля от общей численности  населения исследованных  районов Северного  Дагестана  (309,7 тыс. чел.), %  Percentage of total exposed  population (309.7 thousand  people) in North Daghestan  1  0,01–0,04  15,8  167134  53,9  2  0,05–0,09  24,7  16985  5,5  3  0,1–0,19  36,8  108147  34,9  4  0,2–0,3  17,9  9023  2,9  5  0,4–0,5  4,8  8444  2,8    0,01–0,5  100  309733  100      Таблица 2. Индивидуальные канцерогенные риски  Table 2. Individual cancer risks  №  Концентрация As (C), мг/л  As concentration (C), mg/L   Индивидуальные канцерогенные риски, ICR  Individual cancer risks, ICR  C min  C max  C сред. C, medium  ICR min  ICR max  ICR, среднее  значение  ICR, medium  1  0,01  0,04  0,025  4,29E‐04  1,71E‐03  1,07E‐03  2  0,05  0,09  0,07  2,14E‐03  3,86E‐03  3,00E‐03  3  0,1  0,19  0,14  4,29E‐03  8,14E‐03  6,00E‐03  4  0,2  0,3  0,25  8,57E‐03  1,29E‐02  1,07Е‐02  5  0,4  0,5  0,4  1,71E‐02  2,14E‐02  1,71E‐02  Примечание: ICR min – индивидуальный дополнительный канцерогенный риск при указанной минимальной   концентрации мышьяка в питьевой воде; ICR max – индивидуальный дополнительный канцерогенный риск   при указанной максимальной концентрации мышьяка в питьевой воде; ICR сред. ПОЛУЧЕННЫЕ РЕЗУЛЬТАТЫ И ИХ ОБСУЖДЕНИЕ – индивидуальный   дополнительный канцерогенный риск при среднем значении содержания мышьяка в питьевой воде  Note: ICR min – individual cancer risk (As content – 0.01 mg/L); ICR max – individual cancer risk (As content – 0.5 mg/L);   ICR medium – individual cancer risk (As content – 0.09 mg/L) Таблица 1. Содержание мышьяка в питьевой воде из подземных источников водоснабжения   и численность экспонированного населения  Table 1. Arsenic contamination in groundwater used for drinking and the exposed population  №  Содержание  мышьяка в питьевой  воде, мг/л  (ГН 0,01мг/л)  Arsenic contamination  in drinking water, mg/L  (Hygienic standard   0,01 mg/L)  Частота  распределения  концентраций  мышьяка,  %  Frequency of arsenic  occurrence in water  samples, %   Численность  экспонированного  населения,  тыс. чел. Exposed population,  thousand people  Доля от общей численности  населения исследованных  районов Северного  Дагестана  (309,7 тыс. чел.), %  Percentage of total exposed  population (309.7 thousand  people) in North Daghestan  1  0,01–0,04  15,8  167134  53,9  2  0,05–0,09  24,7  16985  5,5  3  0,1–0,19  36,8  108147  34,9  4  0,2–0,3  17,9  9023  2,9  5  0,4–0,5  4,8  8444  2,8    0,01–0,5  100  309733  100 Таблица 1. Содержание мышьяка в питьевой воде из подземных источников водоснабжения   и численность экспонированного населения  Table 1 Arsenic contamination in groundwater used for drinking and the exposed population Таблица 2. Индивидуальные канцерогенные риски  Table 2. Individual cancer risks Таблица 2. Индивидуальные канцерогенные риски  Table 2. Individual cancer risks  №  Концентрация As (C), мг/л  As concentration (C), mg/L   Индивидуальные канцерогенные риски, ICR  Individual cancer risks, ICR  C min  C max  C сред. C, medium  ICR min  ICR max  ICR, среднее  значение  ICR, medium  1  0,01  0,04  0,025  4,29E‐04  1,71E‐03  1,07E‐03  2  0,05  0,09  0,07  2,14E‐03  3,86E‐03  3,00E‐03  3  0,1  0,19  0,14  4,29E‐03  8,14E‐03  6,00E‐03  4  0,2  0,3  0,25  8,57E‐03  1,29E‐02  1,07Е‐02  5  0,4  0,5  0,4  1,71E‐02  2,14E‐02  1,71E‐02  Примечание: ICR min – индивидуальный дополнительный канцерогенный риск при указанной минимальной   концентрации мышьяка в питьевой воде; ICR max – индивидуальный дополнительный канцерогенный риск   при указанной максимальной концентрации мышьяка в питьевой воде; ICR сред. – индивидуальный   дополнительный канцерогенный риск при среднем значении содержания мышьяка в питьевой воде  Note: ICR min – individual cancer risk (As content – 0.01 mg/L); ICR max – individual cancer risk (As content – 0.5 mg/L);   ICR medium – individual cancer risk (As content – 0.09 mg/L) Примечание: ICR min – индивидуальный дополнительный канцерогенный риск при указанной минимальной   концентрации мышьяка в питьевой воде; ICR max – индивидуальный дополнительный канцерогенный риск   при указанной максимальной концентрации мышьяка в питьевой воде; ICR сред. ecodag.elpub.ru/ugro/issue/current South of Russia: ecology, development  2023 Vol. 18 no.2 Геологические, гидрогеологические и инженерно‐ геологические исследования на участке расчистки русла реки  Медведицы // Машиностроение и безопасность  жизнедеятельности. 2011. N 2. С. 22–25. 6. Ошкин М.И., Полозова И.А., Голубева Ю.С., Желтобрюхов  В.Ф. Геологические, гидрогеологические и инженерно‐ 6. Ошкин М.И., Полозова И.А., Голубева Ю.С., Желтобрюхов  В.Ф. Геологические, гидрогеологические и инженерно‐ геологические исследования на участке расчистки русла реки  Медведицы // Машиностроение и безопасность  жизнедеятельности. 2011. N 2. С. 22–25. ‐  изучение  и  применение  медицинских  препаратов  с  использованием  хелатирующей  и/или  антиоксидантной  терапии,  повышающих  адаптацио‐ нные возможности организма. 3)  по  работе  с  населением  через  информи‐ рование о возможных рисках для здоровья: 7. Шарапов Р.В. Глобальные экологические катастрофы: миф  или реальность? // Машиностроение и безопасность  жизнедеятельности. 2011. N 1. С. 14–16. 7. Шарапов Р.В. Глобальные экологические катастрофы: миф  или реальность? // Машиностроение и безопасность  жизнедеятельности. 2011. N 1. С. 14–16. ‐  распространение  информации  среди ‐  распространение  информации  среди  экспонируемого  населения  об  источниках  поступления  токсичных компонентов и возможных последствиях его  воздействия; 8. Шойгу С.К. и др. Атлас природных и техногенных  опасностей и рисков чрезвычайных ситуаций в Российской 8. Шойгу С.К. и др. Атлас природных и техногенных  опасностей и рисков чрезвычайных ситуаций в Российской Федерации. М.: «Издательство «Феория»», 2011 г. Карта воды  России. URL: http://watermap.zdorovieinfo.ru/karta‐zagraznenii‐ pdk?zoom=4&page=1&CenterX=47. Федерации. М.: «Издательство «Феория»», 2011 г. Карта воды  России. URL: http://watermap.zdorovieinfo.ru/karta‐zagraznenii‐ pdk?zoom=4&page=1&CenterX=47. ‐  организация  мероприятий  по  пропаганде  здорового образа жизни, усилению мотивации населе‐ ния к сохранению собственного здоровья. 726749&CenterY=58.759918#20]. (дата обращения: 14.01. 2023)  9. Качество подземных вод России и их загрязнение. URL:  http://www.protown.ru/information/hide/2832.html (дата  обращения: 14.01. 2023) 726749&CenterY=58.759918#20]. (дата обращения: 14.01. 2023)  9. Качество подземных вод России и их загрязнение. URL:  http://www.protown.ru/information/hide/2832.html (дата  обращения: 14.01. 2023) ПОЛУЧЕННЫЕ РЕЗУЛЬТАТЫ И ИХ ОБСУЖДЕНИЕ Таким  образом,  расчет  канцерогенных  рисков  показал,  что  исследованные  питьевые  воды  в  гидрогеохимической  провинции  на  территории  Северного  Дагестана,  при  условии  их  постоянного  длительного  использования  формируют  высокие  уровни  канцерогенного  риска  [26;  27]  для  здоровья  населения. Проведенные  исследования  питьевых  подземных  вод  позволили  разработать  ряд  практических  рекомен‐ даций о проведении следующих мероприятий: 1) организационных и санитарно‐технических:   мониторинг качества питьевых вод; 1) организационных и санитарно‐технических:     ‐ мониторинг качества питьевых вод;     ‐проведение  углубленных  эпидемио‐ логических  исследований  в  районах  гидрогео‐ химической аномалии; Следует также отметить, что при сохраняющихся  условиях экспозиции (содержание мышьяка в питьевой ecodag.elpub.ru/ugro/issue/current ecodag.elpub.ru/ugro/issue/current 98 South of Russia: ecology, development  2023 Vol. 18 no.2 South of Russia: ecology, development  2023 Vol. 18 no.2 T.O. Abdulmutalimova et al. исследований  оценки  воздействия  некоторых  токсич‐ ных компонентов на здоровье населения [28; 29]. ‐ инвентаризация существующих артезианских  скважин и организация их зон санитарной охраны;     ‐  обеспечение  кранового  режима  эксплуа‐ тации самоизливающихся артезианских скважин;     ‐ разработка технологий очистки питьевых вод  от  токсичных  компонентов,  оптимальных  для  регио‐ нальных  особенностей  территории,  эффективных,  экономически выгодных и удобных в эксплуатации для  больших групп населения; ‐ инвентаризация существующих артезианских  скважин и организация их зон санитарной охраны;     ‐  обеспечение  кранового  режима  эксплуа‐ тации самоизливающихся артезианских скважин;     ‐ разработка технологий очистки питьевых вод  от  токсичных  компонентов,  оптимальных  для  регио‐ нальных  особенностей  территории,  эффективных,  экономически выгодных и удобных в эксплуатации для  больших групп населения; ‐ инвентаризация существующих артезианских  скважин и организация их зон санитарной охраны; ‐ инвентаризация существующих артезианских  скважин и организация их зон санитарной охраны; ‐ инвентаризация существующих артезианских  скважин и организация их зон санитарной охраны;     ‐  обеспечение  кранового  режима  эксплуа‐ ‐  обеспечение  кранового  режима  эксплуа‐ тации самоизливающихся артезианских скважин;   б й БИБЛИОГРАФИЧЕСКИЙ СПИСОК  1. Schreiber M.E. Chapter 20 – Arsenic in groundwater in the  United States: research highlights since 2000, current concerns  and next steps // Global Groundwater. 2021. P. 275–299. https://doi.org/10.1016/B978‐0‐12‐818172‐0.00020‐7   2. Arshad I., Umar R. Chapter 19 – Urban Groundwater Pollution:  Causes, impacts and mitigation // Current Directions in Water  Scarcity Research. 2022. V. 5. P. 379–397. https://doi.org/10.1016/B978‐0‐323‐85378‐1.00019‐2  3. Mukherjee A., Scanlon Bridget R., Aureli A. Et al. Global  Groundwater, Elsevier. 2021. P. v‐xvii, р. 627,  https://doi.org/10.1016/B978‐0‐12‐818172‐0.00048‐7  4. Димакова Н.А., Шарапов Р.В. Проблема загрязнения  подземных вод // Современные наукоемкие технологии. 2013. N 2. С. 79–82. ‐ разработка технологий очистки питьевых вод  от  токсичных  компонентов,  оптимальных  для  регио‐ нальных  особенностей  территории,  эффективных,  экономически выгодных и удобных в эксплуатации для  больших групп населения; 2) медико‐биологических: ‐  повышение  квалификации  медицинских  работников  по  клинике  и  ранней  диагностике  заболеваний,  вызванных  избытком  и  дефицитом,  поступающих с питьевой водой компонентов; ‐  оказание  консультативной  помощи  населе‐ нию; ‐ проведение профилактических медосмотров  населения  (в  первую  очередь,  групп  повышенного  риска)  с  применением  лабораторного  обследования  и  метода  биомониторинга  для  подтверждения  заболе‐ ваний,  вызванных  воздействием  токсичных  компо‐ нентов; 5. Григорюк Е.Н. Влияние сточных вод химической  промышленности на водные ресурсы округа Муром  Владимирской области // Машиностроение и безопасность  жизнедеятельности. 2012. N 2. С. 20–22 . 5. Григорюк Е.Н. Влияние сточных вод химической  промышленности на водные ресурсы округа Муром  Владимирской области // Машиностроение и безопасность  жизнедеятельности. 2012. N 2. С. 20–22 . 6. Ошкин М.И., Полозова И.А., Голубева Ю.С., Желтобрюхов  В.Ф. Согласно  полученным  результатам,  можно  сделать  следующие выводы: Согласно  полученным  результатам,  можно  сделать  следующие выводы: 10. Информационный бюллетень «О состоянии недр на  территории Российской Федерации в 2021 г.». М.: 2022. Вып.45. 415с. URL: ‐ подземные воды горных районов Республики  Дагестан  в  основном  соответствуют  гигиеническим  требованиям,  предъявляемым  к  качеству  питьевой  воды. В  некоторых  населенных  пунктах  выявлены  повышенные  значения  жесткости  (до  14). В  90%  образцах  питьевой  воды  выявлен  дефицит  йодидов. Использование  населением  подземных  вод  для  питьевых  целей  в  горных  районах  возможно  с  предварительным  проведением  соответствующих  мероприятий  по  смягчению  воды  и  профилактических  мероприятий  среди  населения,  связанных  с  восполнением дефицита йода. ‐ подземные воды горных районов Республики  Дагестан  в  основном  соответствуют  гигиеническим  требованиям,  предъявляемым  к  качеству  питьевой  воды. В  некоторых  населенных  пунктах  выявлены  повышенные  значения  жесткости  (до  14). В  90%  образцах  питьевой  воды  выявлен  дефицит  йодидов. Использование  населением  подземных  вод  для  питьевых  целей  в  горных  районах  возможно  с  предварительным  проведением  соответствующих  мероприятий  по  смягчению  воды  и  профилактических  мероприятий  среди  населения,  связанных  с  восполнением дефицита йода. https://geomonitoring.ru/download/IB/2021.pdf (дата  обращения: 10.02. 2023) 11. Кондаков В.М., Газалиев И.М., Курбанова Л.М.,  Курбанисмаилова А.С., Гусейнова А.Ш. Прогнозно‐ эксплуатационные ресурсы подземных вод в Предгорном  Дагестане // Аридные экосистемы. 2022. Т. 28. N 2(91). С. 94– 101. эксплуатационные ресурсы подземных вод в Предгорном  Дагестане // Аридные экосистемы. 2022. Т. 28. N 2(91). С. 94– 101. 12. Эколого‐геохимические особенности подземных вод  Северо‐Восточного Кавказа (Дагестан). Природные и  антропогенные факторы загрязнения: отчет о НИР (итоговый)  /ин‐т геологии ДФИЦ РАН; рук. Газалиев И.М.; исполн.:  Абдулмуталимова Т.О. [и др.]. Махачкала, 2022. 138 с. 13. Алхасов А.Б., Алхасова Д.А., Алишаев М.Г., Рамазанов  А.Ш., Рамазанов М.М. Освоение геотермальной энергии. Под  ред. Академика РАН В.Е. Фортова. М.: Физматлит, 2022. 318 с. 14. Алхасов А. Б., Алхасова Д. А. Комплексное использование  низкопотенциальных термальных вод юга России для тепло‐,  водоснабжения и решения экологических проблем //  Теплоэнергетика. 2019. N 5. C. 82–88. 15. Газалиев И.М., Самедов Ш.Г. Качественные показатели  подземных вод горного Дагестана // Труды Института  геологии Дагестанского научного центра РАН. 2021. N 3(86). С. 33–49. DOI: 10.33580/2541‐9684‐2021‐86‐3‐33‐49  16. Магдиев А.М., Абдуллаев М.Ш., Гафуров М.М., Амиров  А.М., Кубатаев З.Ю. Химический анализ питьевых вод  Дагестана (горные районы). Махачкала: АЛЕФ, 2019. 154 с. 12. Эколого‐геохимические особенности подземных вод  Северо‐Восточного Кавказа (Дагестан). Природные и  антропогенные факторы загрязнения: отчет о НИР (итоговый)  /ин‐т геологии ДФИЦ РАН; рук. Газалиев И.М.; исполн.:  Абдулмуталимова Т.О. [и др.]. Махачкала, 2022. 138 с. 13. Алхасов А.Б., Алхасова Д.А., Алишаев М.Г., Рамазанов  А.Ш., Рамазанов М.М. Освоение геотермальной энергии. Под  ред. Академика РАН В.Е. Фортова. М.: Физматлит, 2022. 318 с. 14. Согласно  полученным  результатам,  можно  сделать  следующие выводы: 8. Shojgu S.K. et al. Atlas prirodnykh i tekhnogennykh opasnostei  i riskov chrezvychainykh situatsii v Rossiiskoi Federatsii [The map of  nature and technogenic disasters and risks of emergencies in  Russian Federation]. Available at: 23. Абдулмуталимова Т.О., Рамазанов О.М., Кунжуева К.Г. Результаты мониторинга качества питьевых подземных вод в  Республике Дагестан // В сборнике: Возобновляемая 726749&CenterY 58.759918#20 (accessed 14.01.2023)  9. Kachestvo podzemnykh vod Rossii i ikh zagryaznenie [The  quality of groundwater in Russia and its pollution]. Available at:  http://www.protown.ru/information/hide/2832.html (accessed  14.01.2023) ( ) 9. Kachestvo podzemnykh vod Rossii i ikh zagryaznenie [The  quality of groundwater in Russia and its pollution]. Available at:  http://www.protown.ru/information/hide/2832.html (accessed  14.01.2023) 10. Informatsionnyi byulleten' «O sostoyanii nedr na territorii  Rossiiskoi Federatsii v 2021 g.» [Bulletin of information «About  subsoil situation in Russian Federation in 2021»]. 2022, iss. 45, 415 10. Informatsionnyi byulleten' «O sostoyanii nedr na territorii  Rossiiskoi Federatsii v 2021 g.» [Bulletin of information «About  subsoil situation in Russian Federation in 2021»]. 2022, iss. 45, 415  p. Available at: https://geomonitoring.ru/download/IB/2021.pdf  (accessed 10.02.2023) 10. Informatsionnyi byulleten' «O sostoyanii nedr na territorii  Rossiiskoi Federatsii v 2021 g.» [Bulletin of information «About  subsoil situation in Russian Federation in 2021»]. 2022, iss. 45, 415 24. Абдулмуталимова Т.О., Курбанова Л.М., Гусейнова А.Ш.,  Курбанисмаилова А.С. Особенности питьевого водоснабжения  в аридной зоне Республики Дагестан // Аридные экосистемы. 2017. Т. 23. N 1 (70). С. 93–97. p. Available at: https://geomonitoring.ru/download/IB/2021.pdf  (accessed 10.02.2023) p. Available at: https://geomonitoring.ru/download/IB/2021.pdf  (accessed 10.02.2023) 11. Kondakov V.M., Gazaliev I.M., Kurbanova L.M., 11. Kondakov V.M., Gazaliev I.M., Kurbanova L.M., 25. Курбанова Л.М., Самедов Ш.Г., Газалиев И.М.,  Абдулмуталимова Т.О. Мышьяк в подземных водах Северо‐ 25. Курбанова Л.М., Самедов Ш.Г., Газалиев И.М.,  Абдулмуталимова Т.О. Мышьяк в подземных водах Северо‐ Дагестанского артезианского бассейна // Геохимия. 2013. N 3. С. 262. DOI: 10.7868/S0016752513030047  26. Абдулмуталимова Т.О. Оценка канцерогенного риска  здоровью населения при использовании подземных вод с  высоким содержанием мышьяка в качестве источников  питьевого водоснабжения на примере Республики Дагестан //  Токсикологический вестник. 2019. N 6 (159). С. 39–44. 27. Абдулмуталимова Т.О., Ревич Б.А., Газалиев И.М. Мышьяк  в питьевых артезианских водах Северного Дагестана и риски  здоровью населения // Разведка и охрана недр. 2018. N 1. С. 37–40. 28 Р А Ш К М А С И В А Kurbanismailova A.S., Guseynova A.Sh. Prognosis and using  resources of groundwater in foothill area of Daghestan. Aridnye  ekosistemy [Arid ecosystems]. 2022, vol. 28, no. 2(91), pp. 94–101. (In Russian) 12. Gazaliev I.M. Ekologo‐geokhimicheskie osobennosti  podzemnykh vod Severo‐Vostochnogo Kavkaza (Dagestan). Согласно  полученным  результатам,  можно  сделать  следующие выводы: Prirodnye i antropogennye faktory zagryazneniya: otchet o NIR  (itogovyi) [Ecological and geochemical particularities of  groundwater in North‐East Caucasus (Daghestan). Nature and  technogenic factors of pollution: final report]. Makhachkala, 2022,  138 p. (In Russian) Токсикологический вестник. 2019. N 6 (159). С. 39 44. 27. Абдулмуталимова Т.О., Ревич Б.А., Газалиев И.М. Мышьяк  в питьевых артезианских водах Северного Дагестана и риски  здоровью населения // Разведка и охрана недр. 2018. N 1. С. 37–40. 13. Alkhasov A.B., Alkhasova D.A., Alishaev M.G., Ramazanov  A.Sh., Ramazanov M.M. Razvitie geothermalnoy energii [The  geothermal energy development]. 2022, 318 p. (In Russian)  14. Alkhasov A.B., Alkhasova D.A. Comprehensive using of low‐ potential thermal water in South of Russia for ecological problems  solving. Teploenergetika [Heat engineering]. 2019, no. 5, pp. 82– 88. (In Russian) 13. Alkhasov A.B., Alkhasova D.A., Alishaev M.G., Ramazanov  A.Sh., Ramazanov M.M. Razvitie geothermalnoy energii [The  geothermal energy development]. 2022, 318 p. (In Russian)  14. Alkhasov A.B., Alkhasova D.A. Comprehensive using of low‐ potential thermal water in South of Russia for ecological problems  solving. Teploenergetika [Heat engineering]. 2019, no. 5, pp. 82– 88. (In Russian) 28. Рамазанов А.Ш., Каспарова М.А., Сараева И.В., Алхасов  А.Б., Рамазанов О.М., Ахмедов М.И. Решение экологических  проблем при комплексном использовании геотермальных  минерализованных вод Северного Дагестана // Юг России:  экология, развитие. 2016. Т. 11. N 4. С. 129–138. https://doi.org/10.18470/1992‐1098‐2016‐4‐129‐138  29. Алхасов А.Б, Бадавов Г.Б., Белан С.И., Нинаналов С.А. Использование возобновляемых источников энергии в  Республике Дагестан // Региональные проблемы  преобразования экономики. 2015. N 9 (59). С. 36–42. 15. Gazaliev I.M., Samedov Sh.G. The quality indicators of  groundwater of Mountain Daghestan. Proceedings of the Institute  of geology of Daghestan state scientific center of Russian Academy  f S i 2021 3(86) 33 49 (I R i ) DOI 15. Gazaliev I.M., Samedov Sh.G. The quality indicators of  groundwater of Mountain Daghestan. Proceedings of the Institute  of geology of Daghestan state scientific center of Russian Academy  of Sciences, 2021, no. 3(86), pp. 33–49. (In Russian) DOI:  10.33580/2541‐9684‐2021‐86‐3‐33‐49 29. Алхасов А.Б, Бадавов Г.Б., Белан С.И., Нинаналов С.А. Использование возобновляемых источников энергии в Республике Дагестан // Региональные проблемы  преобразования экономики. 2015. N 9 (59). С. 36–42. 16. Magdiev A.M., Abdullaev M.Sh., Gafurov M.M., Amirov A.M.,  Kubataev Z.Ju. Khimicheskii analiz pit'evykh vod Dagestana (gornye  raiony) [Chemical analyze of drinking water in Daghestan  (mountain districts)]. Makhachkala, ALEF Publ., 2019, 154 p. (In  Russian) Согласно  полученным  результатам,  можно  сделать  следующие выводы: Физико‐химический анализ питьевых вод в  некоторых горных районах Дагестана // Известия  Дагестанского государственного педагогического  университета. Естественные и точные науки. 2018. Т. 12. N 1. С. 5–9. 17. Абдуллаев М.Ш., Магдиев А.М., Гафуров М.М., Кубатаев  З.Ю., Ахмедов А.М. Физико‐химический анализ питьевых вод в  некоторых горных районах Дагестана // Известия  Дагестанского государственного педагогического  университета. Естественные и точные науки. 2018. Т. 12. N 1. С. 5–9. 18. Гигиенические требования к охране подземных вод от  загрязнения. Санитарные правила. СП 2.1.5.1059‐01. М: МЗ РФ. 2001. 14 с. 19. Санитарные правила и нормы. СанПиН 2.1.4.1274‐01. Питьевая вода. Гигиенические требования к качеству воды  централизованных систем питьевого водоснабжения. Контроль качества (рег. N 3011). М.: Госкомсанэпиднадзор  России. 2001. 62 с. 20. Санитарные правила и нормы СанПиН 1.2.3685‐21  "Гигиенические нормативы и требования к обеспечению  безопасности и (или) безвредности для человека факторов  среды обитания" (рег. N 62296). М.: Госкомсанэпиднадзор  России, 2021. 1025 с. 21. Руководство по оценке риска для здоровья населения при  воздействии химических веществ, загрязняющих  окружающую среду. Р 2.1.10.1920‐04. М: Федеральный Центр  Госсанэпиднадзора Минздрава России. 2004. 143 с. 22. Toxicological profile for arsenic. U.S. department of health and  human services public health service agency for toxic substances  and disease registry. Atlanta, Georgia. 2007. 559 p. 23. Абдулмуталимова Т.О., Рамазанов О.М., Кунжуева К.Г. Результаты мониторинга качества питьевых подземных вод в  Республике Дагестан // В сборнике: Возобновляемая  энергетика: проблемы и перспективы. Актуальные проблемы  освоения возобновляемых энергоресурсов. Материалы VI  Международной конференции «Возобновляемая энергетика:  проблемы и перспективы» и XII школы молодых ученых  «Актуальные проблемы освоения возобновляемых  энергоресурсов» имени Э.Э. Шпильрайна. Махачкала, 2020. С. 489–493. 2. Arshad I., Umar R. Urban Groundwater Pollution: Causes,  impacts and mitigation. Current Directions in Water Scarcity  Research, 2022, vol. 5, pp. 379–397. https://doi.org/10.1016/B978‐0‐323‐85378‐1.00019‐2  3. Mukherjee A., Scanlon Bridget R., Aureli A. Global  Groundwater: source, scarcity, sustainability, security, and  solutions. 2020, P. v‐xvii, 676 p. https://doi.org/10.1016/B978‐0‐ 12‐818172‐0.00048‐7 Дагестанского государственного педагогического  университета. Естественные и точные науки. 2018. Т. 12. N 1. С. 5–9. https://doi.org/10.1016/B978 0 323 85378 1.00019 2  3. Mukherjee A., Scanlon Bridget R., Aureli A. Global  Groundwater: source, scarcity, sustainability, security, and  solutions. 2020, P. v‐xvii, 676 p. https://doi.org/10.1016/B978‐0‐ 12‐818172‐0.00048‐7 18. Гигиенические требования к охране подземных вод от  загрязнения. Санитарные правила. СП 2.1.5.1059‐01. М: МЗ РФ. 2001. 14 с. 4. Dimakova N.A., Sharapov R.V. The problems of groundwaters  pollution. Sovremennye naukoemkie tekhnologii [Modern sciences  technology]. 2013, no. 2, pp. 79–82. (In Russian) 19. Санитарные правила и нормы. СанПиН 2.1.4.1274‐01. Питьевая вода. Согласно  полученным  результатам,  можно  сделать  следующие выводы: Алхасов А. Б., Алхасова Д. А. Комплексное использование  низкопотенциальных термальных вод юга России для тепло‐,  водоснабжения и решения экологических проблем //  Теплоэнергетика. 2019. N 5. C. 82–88. 15. Газалиев И.М., Самедов Ш.Г. Качественные показатели  подземных вод горного Дагестана // Труды Института  геологии Дагестанского научного центра РАН. 2021. N 3(86). С. 33–49. DOI: 10.33580/2541‐9684‐2021‐86‐3‐33‐49  16. Магдиев А.М., Абдуллаев М.Ш., Гафуров М.М., Амиров  А.М., Кубатаев З.Ю. Химический анализ питьевых вод  Дагестана (горные районы). Махачкала: АЛЕФ, 2019. 154 с. ‐  подземные  воды  равнинных  районов  не  соответствуют  гигиеническим  требованиям  по  содержанию  мышьяка,  кадмия  и  фенолов. Канцерогенные  риски  для  населения,  вызванные  длительным потреблением этих вод в питьевых целях,  находятся  на  уровне,  недопустимом  для  населения,  следовательно,  необходимо  проведение  целевых  мероприятий  по  очистке  от  мышьяка  и  других  загрязняющих  компонентов,  либо  поиска  альтер‐ нативных источников водоснабжения. ‐  подземные  воды  равнинных  районов  не  соответствуют  гигиеническим  требованиям  по  содержанию  мышьяка,  кадмия  и  фенолов. Канцерогенные  риски  для  населения,  вызванные  длительным потреблением этих вод в питьевых целях,  находятся  на  уровне,  недопустимом  для  населения,  следовательно,  необходимо  проведение  целевых  мероприятий  по  очистке  от  мышьяка  и  других  загрязняющих  компонентов,  либо  поиска  альтер‐ нативных источников водоснабжения. 13. Алхасов А.Б., Алхасова Д.А., Алишаев М.Г., Рамазанов  А.Ш., Рамазанов М.М. Освоение геотермальной энергии. Под  ред. Академика РАН В.Е. Фортова. М.: Физматлит, 2022. 318 с. 14. Алхасов А. Б., Алхасова Д. А. Комплексное использование  низкопотенциальных термальных вод юга России для тепло‐,  водоснабжения и решения экологических проблем //  Теплоэнергетика. 2019. N 5. C. 82–88. 13. Алхасов А.Б., Алхасова Д.А., Алишаев М.Г., Рамазанов  А.Ш., Рамазанов М.М. Освоение геотермальной энергии. Под  ред. Академика РАН В.Е. Фортова. М.: Физматлит, 2022. 318 с. 14. Алхасов А. Б., Алхасова Д. А. Комплексное использование  низкопотенциальных термальных вод юга России для тепло‐,  водоснабжения и решения экологических проблем //  Теплоэнергетика. 2019. N 5. C. 82–88. 15. Газалиев И.М., Самедов Ш.Г. Качественные показатели  подземных вод горного Дагестана // Труды Института  геологии Дагестанского научного центра РАН. 2021. N 3(86). С. 33–49. DOI: 10.33580/2541‐9684‐2021‐86‐3‐33‐49 Полученные  в  ходе  данного  исследования  результаты и разработанные рекомендации подтверж‐ дают  актуальность  проблемы  изучения  качества  питьевых  подземных  вод  на  территории  республики  и  свидетельствуют  о  перспективности  более  детальных 16. Магдиев А.М., Абдуллаев М.Ш., Гафуров М.М., Амиров  А.М., Кубатаев З.Ю. Химический анализ питьевых вод  Дагестана (горные районы). Махачкала: АЛЕФ, 2019. 154 с. 99 Юг России: экология, развитие  2023 Т. 18 N  2 Т.О. Абдулмуталимова и др. 17. Абдуллаев М.Ш., Магдиев А.М., Гафуров М.М., Кубатаев  З.Ю., Ахмедов А.М. Согласно  полученным  результатам,  можно  сделать  следующие выводы: Гигиенические требования к качеству воды  централизованных систем питьевого водоснабжения. Питьевая вода. Гигиенические требования к качеству воды  централизованных систем питьевого водоснабжения. Контроль качества (рег. N 3011). М.: Госкомсанэпиднадзор  России. 2001. 62 с. 20. Санитарные правила и нормы СанПиН 1.2.3685‐21  "Гигиенические нормативы и требования к обеспечению  безопасности и (или) безвредности для человека факторов  среды обитания" (рег. N 62296). М.: Госкомсанэпиднадзор  России, 2021. 1025 с. 5. Grigoryuk E.N. The impact of wastewater of chemical industry  on water resources of Murom district of Vladimir region. Mashinostroenie i bezopasnost' zhiznedeyatel'nosti [Engineering  and life safety]. 2012, no. 2, pp. 20–22. (In Russian)  6. Oshkin M.I., Polozova I.A., Golubeva Ju.S., Zheltobryuhov V.F. Geological, hydrogeological and geoengineering researches on the  riverbed area Medvedicy. Mashinostroenie i bezopasnost'  zhiznedeyatel'nosti [Engineering and life safety]. 2011, no. 2, pp. 22–25. (In Russian) 5. Grigoryuk E.N. The impact of wastewater of chemical industry  on water resources of Murom district of Vladimir region. Контроль качества (рег. N 3011). М.: Госкомсанэпиднадзор  России. 2001. 62 с. 20. Санитарные правила и нормы СанПиН 1.2.3685‐21  "Гигиенические нормативы и требования к обеспечению 6. Oshkin M.I., Polozova I.A., Golubeva Ju.S., Zheltobryuhov V.F. Geological, hydrogeological and geoengineering researches on the  riverbed area Medvedicy. Mashinostroenie i bezopasnost'  zhiznedeyatel'nosti [Engineering and life safety]. 2011, no. 2, pp. 22–25. (In Russian) 21. Руководство по оценке риска для здоровья населения при  воздействии химических веществ, загрязняющих 7. Sharapov R.V. Global ecological disasters: mif or reality? Mashinostroenie i bezopasnost' zhiznedeyatel'nosti [Engineering  and life safety]. 2011, no. 1, pp. 14–16. (In Russian)  8. Shojgu S.K. et al. Atlas prirodnykh i tekhnogennykh opasnostei  i riskov chrezvychainykh situatsii v Rossiiskoi Federatsii [The map of  nature and technogenic disasters and risks of emergencies in  Russian Federation]. Available at:  http://watermap.zdorovieinfo.ru/karta‐zagraznenii‐ окружающую среду. Р 2.1.10.1920‐04. М: Федеральный Центр  Госсанэпиднадзора Минздрава России. 2004. 143 с. 22. Toxicological profile for arsenic. U.S. department of health and  human services public health service agency for toxic substances  and disease registry. Atlanta, Georgia. 2007. 559 p. 23. Абдулмуталимова Т.О., Рамазанов О.М., Кунжуева К.Г. Результаты мониторинга качества питьевых подземных вод в  Республике Дагестан // В сборнике: Возобновляемая  энергетика: проблемы и перспективы. Актуальные проблемы  освоения возобновляемых энергоресурсов. Материалы VI  Международной конференции «Возобновляемая энергетика:  проблемы и перспективы» и XII школы молодых ученых  «Актуальные проблемы освоения возобновляемых  энергоресурсов» имени Э.Э. Шпильрайна. Махачкала, 2020. С. 489–493. 22. Toxicological profile for arsenic. U.S. department of health and  human services public health service agency for toxic substances  and disease registry. Atlanta, Georgia. 2007. 559 p. REFERENCES Abdulmutalimova T.O., Ramazanov O.M., Kunzhueva K.G. Rezul'taty monitoringa kachestva pit'evykh podzemnykh vod v REFERENCES 1. Schreiber M.E. Arsenic in groundwater in the United States:  research highlights since 2000, current concerns and next steps. Global Groundwater, 2021, pp. 275–299. https://doi.org/10.1016/B978‐0‐12‐818172‐0.00020‐7 17. Abdullaev M.Sh., Magdiev A.M., Gafurov M.M., Kubataev  Z.Yu., Akhmedov A.M.Physical and chemical analyses of drinking ecodag.elpub.ru/ugro/issue/current 100 South of Russia: ecology, development  2023 Vol. 18 no.2 T.O. Abdulmutalimova et al. Respublike Dagestan [The results of drinking groundwaters quality  monitoring ]. Materialy VI Mezhdunarodnoi konferentsii  «Vozobnovlyaemaya energetika: problemy i perspektivy» i XII  shkoly molodykh uchenykh «Aktual'nye problemy osvoeniya  vozobnovlyaemykh energoresursov» imeni E.E. Shpil'raina. Makhachkala, 2020 [Materials of VI International conference  «Renewable energy: problems and perspectives». Mahachkala,  2020]. Mahachkala, 2020, pp. 489–493. (In Russian)  24. Abdulmutalimova T.O., Kurbanova L.M., Gusejnova A.Sh.,  Kurbanismailova A.S. Features of drinking water supply in arid  zone of Daghestan. Aridnye ekosistemy [Arid ecosystems]. 2017,  vol. 23, no. 1 (70), pp. 93–97. (In Russian)  25. Kurbanova L.M., Samedov Sh.G., Gazaliev I.M.,  Abdulmutalimova T.O. Arsenic I groundwater of North Daghestan Respublike Dagestan [The results of drinking groundwaters quality  monitoring ]. Materialy VI Mezhdunarodnoi konferentsii  «Vozobnovlyaemaya energetika: problemy i perspektivy» i XII  shkoly molodykh uchenykh «Aktual'nye problemy osvoeniya  vozobnovlyaemykh energoresursov» imeni E.E. Shpil'raina. Makhachkala, 2020 [Materials of VI International conference  «Renewable energy: problems and perspectives». Mahachkala,  2020]. Mahachkala, 2020, pp. 489–493. (In Russian)  24. Abdulmutalimova T.O., Kurbanova L.M., Gusejnova A.Sh.,  Kurbanismailova A.S. Features of drinking water supply in arid  zone of Daghestan. Aridnye ekosistemy [Arid ecosystems]. 2017,  vol. 23, no. 1 (70), pp. 93–97. (In Russian)  25. Kurbanova L.M., Samedov Sh.G., Gazaliev I.M.,  Abdulmutalimova T O Arsenic I groundwater of North Daghestan water in some mountain districts in Daghestan. Izvestiya  Dagestanskogo gosudarstvennogo pedagogicheskogo universiteta. Estestvennye i tochnye nauki [News of Daghestan state  pedagogical university. Nature and exact sciences]. 2018, vol. 12,  no. 1, pp. 5–9. (In Russian) no. 1, pp. 5 9. (In Russian)  18. Gigienicheskie trebovaniya k okhrane podzemnykh vod ot  zagryazneniya. Sanitarnye pravila SP 2.1.5.1059‐01 [Hygienic  requirements for the protection of groundwater from pollution. Sanitary rules. SP 2.1.5.1059‐01]. Moscow, Ministry of health of  Russian Federation Publ., 2001, 14 p. (In Russian)  19. Sanitarnye pravila i normy. SanPiN 2.1.4.1274‐01. Pit'evaya  voda. Gigienicheskie trebovaniya k kachestvu vody  tsentralizovannykh sistem pit'evogo vodosnabzheniya. Kontrol'  kachestva. [SanPiN 2.1.4.1274‐01. Sanitary rules and standards. Drinking water. Hygienic requirements to drinking water supply  quality. Quality control]. Moscow, State Committee of Sanitary  and Epidemiological Supervision Publ., 2001, 62 p. (In Russian)  20. AUTHOR CONTRIBUTIONS Омари М. Рамазанов, Иса М. Газалиев разрабатывали  план статьи, маршрут полевых исследований, проводили  отбор образцов питьевой воды. Алибек Б. Алхасов  проанализировал полученные данные и разработал  рекомендации; Тамила О. Абдулмуталимова рассчитала  канцерогенные риски, разработала анкету для опроса  населения с последующим проведением анкетирования  и написала рукопись. Все авторы в равной степени несут  ответственность при обнаружении плагиата,  самоплагиата или других неэтических проблем Omari M. Ramazanov and Isa M. Gazaliev developed the  plan, road map of the study and collected water samples. Alibek B. Alhasov analysed data and gave final  recommendations. Tamila O. Abdulmutalimova calculated  cancer risks, developed the population exposure  questionnaire, conducted interviews and wrote the  manuscript. All authors are equally responsible for  plagiarism, self‐plagiarism and other ethical transgressions. NO CONFLICT OF INTEREST DECLARATION  The authors declare no conflict of interest. REFERENCES 2018, no. 1, pp. 37–40. (In Russian) 27. Abdulmutalimova T.O., Revich B.A., Gazaliev I.M. Arsenic in  artesian water used for drinking by population in North Daghestan  and human health risks. Razvedka i okhrana nedr [Exploration and  subsoil guard]. 2018, no. 1, pp. 37–40. (In Russian)  28. Ramazanov A.Sh., Kasparova M.A., Saraeva I.V., Alhasov A.B.,  Ramazanov O.M., Ahmedov M.I. Ecological problems solving with  complex using of geothermal mineralized water of North  Daghestan. South of Russia: ecology, development, 2016, vol. 11,  no. 4, pp. 129–138. (In Russian) https://doi.org/10.18470/1992‐ 1098‐2016‐4‐129‐138 27. Abdulmutalimova T.O., Revich B.A., Gazaliev I.M. Arsenic in  artesian water used for drinking by population in North Daghestan  and human health risks. Razvedka i okhrana nedr [Exploration and  subsoil guard]. 2018, no. 1, pp. 37–40. (In Russian)  28. Ramazanov A.Sh., Kasparova M.A., Saraeva I.V., Alhasov A.B.,  Ramazanov O.M., Ahmedov M.I. Ecological problems solving with  complex using of geothermal mineralized water of North  Daghestan. South of Russia: ecology, development, 2016, vol. 11,  no. 4, pp. 129–138. (In Russian) https://doi.org/10.18470/1992‐ 1098‐2016‐4‐129‐138 28. Ramazanov A.Sh., Kasparova M.A., Saraeva I.V., Alhasov A.B.,  Ramazanov O.M., Ahmedov M.I. Ecological problems solving with  complex using of geothermal mineralized water of North 28. Ramazanov A.Sh., Kasparova M.A., Saraeva I.V., Alhasov A.B.,  Ramazanov O.M., Ahmedov M.I. Ecological problems solving with  complex using of geothermal mineralized water of North 21. Rukovodstvo po otsenke riska dlya zdorov'ya naseleniya pri  vozdeistvii khimicheskikh veshchestv, zagryaznyayushchikh  okruzhayushchuyu sredu. Р 2.1.10.1920‐04 [Human health risk  assessment from environmental chemicals. Р 2.1.10.1920‐04]. Moscow, Federal Center of State Sanitary and Epidemiological  Supervision of the Ministry of Health of the Russian Federation  Publ., 2004, 143 p. (In Russian) Daghestan. South of Russia: ecology, development, 2016, vol. 11,  no. 4, pp. 129–138. (In Russian) https://doi.org/10.18470/1992‐ 1098‐2016‐4‐129‐138 Daghestan. South of Russia: ecology, development, 2016, vol. 11,  no. 4, pp. 129–138. (In Russian) https://doi.org/10.18470/1992‐ 1098‐2016‐4‐129‐138 29. Alhasov A.B, Badavov G.B., Belan S.I., Ninalalov S.A. Renewable energy sources using in Dagestan republic. Regional'nye problemy preobrazovaniya ekonomiki [Regional  problems of economy improvement]. 2015, no. 9 (59), pp. 36–42. (In Russian) 29. Alhasov A.B, Badavov G.B., Belan S.I., Ninalalov S.A. Renewable energy sources using in Dagestan republic. Regional'nye problemy preobrazovaniya ekonomiki [Regional  problems of economy improvement]. 2015, no. 9 (59), pp. 36–42. (In Russian) 22. Toxicological profile for arsenic. U.S. department of health and  human services public health service agency for toxic substances  and disease registry. Atlanta, Georgia, 2007, 559 p. 23. КОНФЛИКТ ИНТЕРЕСОВ Авторы заявляют об отсутствии конфликта интересов. REFERENCES Sanitarnye pravila i normy SanPiN 1.2.3685‐21 "Gigienicheskie  normativy i trebovaniya k obespecheniyu bezopasnosti i (ili)  bezvrednosti dlya cheloveka faktorov sredy obitaniya".[SanPiN  1.2.3685‐21. Sanitary rules and standards. Hygienic standards and  requirements to human safety from environmental factors]. Moscow, State Committee of Sanitary and Epidemiological  Supervision Publ., 2021, 1025 p. (In Russian)  21. Rukovodstvo po otsenke riska dlya zdorov'ya naseleniya pri  vozdeistvii khimicheskikh veshchestv, zagryaznyayushchikh  okruzhayushchuyu sredu. Р 2.1.10.1920‐04 [Human health risk  assessment from environmental chemicals. Р 2.1.10.1920‐04]. Moscow, Federal Center of State Sanitary and Epidemiological  Supervision of the Ministry of Health of the Russian Federation  Publ., 2004, 143 p. (In Russian)  22. Toxicological profile for arsenic. U.S. department of health and  human services public health service agency for toxic substances  and disease registry. Atlanta, Georgia, 2007, 559 p. 23. Abdulmutalimova T.O., Ramazanov O.M., Kunzhueva K.G. Rezul'taty monitoringa kachestva pit'evykh podzemnykh vod v 18. Gigienicheskie trebovaniya k okhrane podzemnykh vod ot  zagryazneniya. Sanitarnye pravila SP 2.1.5.1059‐01 [Hygienic  requirements for the protection of groundwater from pollution. Sanitary rules. SP 2.1.5.1059‐01]. Moscow, Ministry of health of  Russian Federation Publ., 2001, 14 p. (In Russian)  19. Sanitarnye pravila i normy. SanPiN 2.1.4.1274‐01. Pit'evaya  voda. Gigienicheskie trebovaniya k kachestvu vody  tsentralizovannykh sistem pit'evogo vodosnabzheniya. Kontrol'  kachestva. [SanPiN 2.1.4.1274‐01. Sanitary rules and standards. Drinking water. Hygienic requirements to drinking water supply  quality. Quality control]. Moscow, State Committee of Sanitary  and Epidemiological Supervision Publ., 2001, 62 p. (In Russian)  20. Sanitarnye pravila i normy SanPiN 1.2.3685‐21 "Gigienicheskie  normativy i trebovaniya k obespecheniyu bezopasnosti i (ili)  bezvrednosti dlya cheloveka faktorov sredy obitaniya".[SanPiN  1.2.3685‐21. Sanitary rules and standards. Hygienic standards and  requirements to human safety from environmental factors]. Moscow, State Committee of Sanitary and Epidemiological  Supervision Publ., 2021, 1025 p. (In Russian)  21. Rukovodstvo po otsenke riska dlya zdorov'ya naseleniya pri  vozdeistvii khimicheskikh veshchestv, zagryaznyayushchikh 25. Kurbanova L.M., Samedov Sh.G., Gazaliev I.M., Abdulmutalimova T.O. Arsenic I groundwater of North Daghestan  artesian bassin. Geochemistry, 2013, no. 3, pp. 262. (In Russian)  DOI: 10.7868/S0016752513030047 26. Abdulmutalimova T.O. Cancer risks assessment of using for  drinking groundwater with high arsenic content in Daghestan. Toksikologicheskii vestnik [Toksikological bulletin]. 2019, no. 6  (159), pp. 39–44. (In Russian) 26. Abdulmutalimova T.O. Cancer risks assessment of using for  drinking groundwater with high arsenic content in Daghestan. 27. Abdulmutalimova T.O., Revich B.A., Gazaliev I.M. Arsenic in  artesian water used for drinking by population in North Daghestan  and human health risks. Razvedka i okhrana nedr [Exploration and  subsoil guard]. ORCID ORCID  Тамила О. Абдулмуталимова / Tamila O. Abdulmutalimova https://orcid.org/0000‐0003‐4743‐6154  Омари М. Рамазанов / Omari M. Ramazanov https://orcid.org/0009‐0008‐6228‐7795   Алибек Б. Алхасов / Alibek B. Alhasov https://orcid.org/0000‐0001‐5493‐689X   Иса М. Газалиев / Isa M. Gazaliev https://orcid.org/0009‐0006‐6590‐634X ecodag.elpub.ru/ugro/issue/current ecodag.elpub.ru/ugro/issue/current 101
https://openalex.org/W4250369499
https://tches.iacr.org/index.php/TCHES/article/download/7388/6560
English
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Deep Learning to Evaluate Secure RSA Implementations
IACR transactions on cryptographic hardware and embedded systems
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Mathieu Carbone1, Vincent Conin1, Marie-Angela Cornélie2, François Dassance3, Guillaume Dufresne3, Cécile Dumas2, Emmanuel Prouff4 and Alexandre Venelli3 1 SERMA Safety and Security, France, {m.carbone,v.conin}@serma.com 2 CEA LETI, France, {cecile.dumas,marie-angela.cornelie}@cea.fr 3 Thales ITSEF, France, francois.dassance,guillaume.dufresne,alexandre.venelli}@thalesgroup.com 4 ANSSI, France, emmanuel.prouff@ssi.gouv.fr Abstract. This paper presents the results of several successful profiled side-channel attacks against a secure implementation of the RSA algorithm. The implementation was running on a ARM Core SC 100 completed with a certified EAL4+ arithmetic co-processor. The analyses have been conducted by three experts’ teams, each working on a specific attack path and exploiting information extracted either from the electromagnetic emanation or from the power consumption. A particular attention is paid to the description of all the steps that are usually followed during a security evaluation by a laboratory, including the acquisitions and the observations pre- processing which are practical issues usually put aside in the literature. Remarkably, the profiling portability issue is also taken into account and different device samples are involved for the profiling and testing phases. Among other aspects, this paper shows the high potential of deep learning attacks against secure implementations of RSA and raises the need for dedicated countermeasures. Keywords: Side-Channel Attacks · RSA · Deep Learning Keywords: Side-Channel Attacks · RSA · Deep Learning Licensed under Creative Commons License CC-BY 4.0. IACR Transactions on Cryptographic Hardware and Embedded Systems ISSN 2569-2925, Vol. 2019, No. 2, pp. 132–161 DOI:10.13154/tches.v2019.i2.132-161 1 Introduction Side-channel analysis (SCA) is a class of cryptanalytic attacks that exploit the physical environment of a cryptosystem implementation to recover some leakage about its secrets. It is often much more efficient than a cryptanalysis mounted in the so-called black-box model where no leakage occurs, and dedicated countermeasures are usually implemented to protect the execution of cryptographic algorithms on embedded systems. In most of secure products like smart-cards, the security is achieved by combining techniques applied at the software level (e.g. masking/blinding [Cor99] or shuffling [MOP07]) with mechanisms acting at the hardware level (e.g. clock jittering, white noise addition or power consumption balancing [MOP07]). This is especially true for RSA implementations where resistance against side-channel attacks is achieved by defining a secure exponentiation algorithm (at software level) on the basis of a secure arithmetic co-processor (e.g. implementing a fast Montgomery modular arithmetic while limiting information leakage) [BMV05, BÖPV03]. Side-channel analysis (SCA) is a class of cryptanalytic attacks that exploit the physical environment of a cryptosystem implementation to recover some leakage about its secrets. It is often much more efficient than a cryptanalysis mounted in the so-called black-box model where no leakage occurs, and dedicated countermeasures are usually implemented to protect the execution of cryptographic algorithms on embedded systems. In most of secure products like smart-cards, the security is achieved by combining techniques applied at the software level (e.g. masking/blinding [Cor99] or shuffling [MOP07]) with mechanisms acting at the hardware level (e.g. clock jittering, white noise addition or power consumption balancing [MOP07]). This is especially true for RSA implementations where resistance against side-channel attacks is achieved by defining a secure exponentiation algorithm (at software level) on the basis of a secure arithmetic co-processor (e.g. implementing a fast Montgomery modular arithmetic while limiting information leakage) [BMV05, BÖPV03]. When it comes to assess the robustness of an RSA implementation against the SCA threat, several attacks are performed by experts, usually after a leakage characterization step. To help security evaluators, some technical reports like the AIS-46 published by BSI [fIS18] give overviews and recommendations on the relevant side-channel attacks that have to be applied against implementations. Among them, the so-called family of profiled When it comes to assess the robustness of an RSA implementation against the SCA threat, several attacks are performed by experts, usually after a leakage characterization step. Deep Learning to Evaluate Secure RSA Implementations Mathieu Carbone1, Vincent Conin1, Marie-Angela Cornélie2, François Dassance3, Guillaume Dufresne3, Cécile Dumas2, Emmanuel Prouff4 and Alexandre Venelli3 2A certified arithmetic co-processor comes with guidelines that detail how to use the crypto-coprocessor in a secure manner. As a cautionary note, we alert the reader on the fact that we did not have access to the code in order to verify the compliance with these guidelines. Moreover, as discussed in the conclusion of the paper, the software part of the targeted RSA implementation does not embed specific security mechanisms to defeat horizontal or address-bit side-channel attacks. This choice has been done deliberately by CryptoExperts’ team (https://www.cryptoexperts.com/) who was responsible for the development of the RSA software part. Actually, the latter implementation was part of a challenge organized by ANSSI’s laboratory of hardware security for industrial partners. This paper shows that the application of advanced profiling attacks like those based on Deep Learning renders security mechanisms against horizontal and address-bit attacks mandatory to achieve a high level of security. 1In this case, [SW14a] shows that the secret RSA parameter may be efficiently reconstruct from several randomized representations if the random value used for the blinding has bit-length 64, which is common in today implementations. Related Works Many studies have been published to argue on the efficiency of profiled attacks against (secure) block cipher implementations (see e.g. [BLR13, GHO15, HZ12, HGM+11, LBM14, LMBM13, LPB+15, PSB+18] for the most recent ones). However, few works have been published on asymmetric cryptographic implementations like ECDSA or RSA. Some like [MAB+18] have followed a machine learning approach to demonstrate successful detection of state-of-the-art cache-based SCAs. Other profiled attacks (like e.g. [LBM14]) have been tested against RSA but the targeted implementation was not secure (neither on the software nor on the hardware level). The main challenge when attacking secure RSA implementations is that the attack must be able to recover more than 90% of the secret parameter from a single execution1 (due to exponent randomization [Cor99]) without knowing neither the message nor the modulus which are processed (due to input and modulus randomizations [Gir06]). The so-called class of horizontal collisions attacks has been introduced to specifically address this issue [Wal01]. However, even if the subsequent works like [BJPW13, CFG+10, PZS17, vWWB11] have improved the original idea, none of them has been shown to be efficient against an implementation running on a defensive arithmetic co-processor (like e.g. those whose security has been certified in a Common Criteria framework [Arr18]). 1 Introduction To help security evaluators, some technical reports like the AIS-46 published by BSI [fIS18] give overviews and recommendations on the relevant side-channel attacks that have to be applied against implementations. Among them, the so-called family of profiled Carbone, Conin, Cornélie, Dassance, Dufresne, Dumas, Prouff, Venelli 133 SCA is recognized as the most effective ones since the underlying adversary is assumed to priorly use an open copy of the final target to precisely tune all the parameters of the attack. It includes Templates Attacks [CRR02] and Stochastic modelling (a.k.a. Linear Regression Analysis) [DPRS11, Sch08, SLP05]. This attack strategy where the adversary precedes the attack by a supervised training phase may be viewed as a classical Machine Learning problem and a recent line of works has started to build connections between the world of side-channel analysis and the world of Machine Learning (with a particular focus on Deep Learning). Contributions To the best of our knowledge, this paper presents the first full profiled attack against an RSA implementation running on a certified arithmetic co-processor and equipped with classical side-channel countermeasures (blinding of the message, blinding of the exponent and blinding of the modulus as e.g. detailled in [Cor99]).2 Several attacks, exploiting either the electromagnetic emanation or the power consumption measured during the processing, are presented that combine the principles of address-bit DPA attacks [IIT02, MDS99b] and horizontal attacks [BJPW13] with machine learning techniques like Convolutional Neural Networks (CNN) to accurately recover the value of the exponent bits. A special attention is paid to the description of the acquisition campaigns and of the pre-processing of the measured traces, as the latter steps are known to pose practical difficulties when it comes to attack arithmetic co-processors (e.g. synchronization issues, size of the traces Deep Learning to Evaluate Secure RSA Implementations 134 and choice of the sampling rate, few information on the details of the hardware processing, etc.). Also, the question of profiling portability (i.e. the ability to apply a profiling done on a device A to attack a device B with the same architecture) is addressed by using different device samples. Our results practically demonstrate that, in our context, the latter portability does not significantly impact the effectiveness of our attacks. More generally, our work shows that the ability of the deep learning algorithms to efficiently operate on highly-dimensional inputs (which are leakage measurements in our context) even in the presence of signal jittering makes them a tool of choice for the secure evaluation of RSA implementations (in addition to the methods already in the toolbox of the evaluator – see e.g. [fIS18] –). Paper Organization Section 2 is dedicated to the presentation of the software and hardware aspects of the target RSA implementation and the identification of two attack paths. Then, we de- scribe in Section 3 the acquisitions’ campaigns that have been launched to measure the power consumption and the electromagnetic emanation during the RSA processing. A leakage characterization analysis has afterwards been done on the measured traces. It is discussed in Section 4. Eventually, Section 5 presents our profiled attacks’ results and our main observations related to the application of deep learning attacks against RSA implementations. 2.1.1 Brief Hardware Description The hereby target of evaluation is a software RSA SFM (StraightForward Mode in opposition to the Chinese Remainder Mode) running on a 0.13um 32-bit Contact Smartcard IC. The IC has been EAL4+ certified in Asia (out of the European SOG-IS scheme [Mem18]). It features an ARM core SC 100 with 18 KB of RAM, 8 KB of ROM and 548 KB of FLASH. An overview of the IC die and of the main blocks is given in Figure 1. Figure 1: General view of the die after sample opening; mag 50X Figure 1: General view of the die after sample opening; mag 50X The RSA multiplications and squarings are performed with the same operation of the embedded arithmetic co-processor which includes a dedicated memory area, the so-called Carbone, Conin, Cornélie, Dassance, Dufresne, Dumas, Prouff, Venelli 135 crypto-RAM, composed of 8 segments of 64 words (2048 bits). Moreover, to speed-up the processing, the modular arithmetic routines of the library are based on Montgomery arithmetic. It is detailed here-after. 2.1.2 Low Level Library and Montgomery Arithmetic The co-processor of the device studied in this paper implements the so-called Montgomery arithmetic (see e.g. [BSS05] for a clear and short introduction). Roughly speaking, the core idea of this arithmetic is to replace several costly modular reductions with the same modulus by some pre-processing and then efficient divisions by a well-chosen power of 2 (we recall that such divisions simply consist in right binary shifts). Let N denote a modulus and let us assume that we want to compute a sequence of operations in the form x · y mod N for x, y ∈Z/NZ. Thanks to the arithmetic co- processor, this processing is done by calling a so-called Montgomery multiplication. Before running such a multiplication, the operands must be normalized, i.e. put in Montgomery representation ex = x·R mod N and ey = y ·R mod N, where R is the Montgomery constant defined in our context by R .= 2ω mod N with ω being the smallest multiple of 32 which is greater than or equal to log2(N). Then, a hardware routine computing u · v · R−1 mod N is executed for u = ex and v = ey. It may be checked that the following equality holds: ex · ey · R−1 mod N = (x · y) · R mod N = ez , so that the output is indeed the Montgomery representation of z = x · y mod N. Once the initial operands of a sequence of modular multiplications have been put in Montgomery representation, all operations are performed under this representation. In particular, modular multiplications are replaced by Montgomery multiplications with the pre-defined RSA modulus N and the Montgomery constant R. In our context, this is actually done through the procedure MMM(idest, i1, i2) which stores in the segment of index idest the result of the Montgomery multiplication between values stored in segments of indexes i1 and i2. The output and input values are in Montgomery representation. When the computation is over, the final result is put back in its natural integer form (which simply consists in multiplying the result by R−1 modulo N). 2.2 Target Presentation: Software Part The targeted RSA implementation is based on a Left-to-Right Square & Multiply Always exponentiation algorithm [Cor99] combined with three countermeasures: input randomiza- tion, modulus randomization and exponent randomization. Moreover the code is branch-less as the exponent bit is not tested and since no conditional jump is performed. 2.2.1 Countermeasures Modulus Randomization. This technique is based on the following equality: md mod N = (md mod k0 · N) mod N, (1) (1) md mod N = (md mod k0 · N) mod N, where k0 is any (random) positive integer co-prime to N. Note that any integer lower than p and q is co-prime to N, and in particular, any integer of bit-length 64 (or less) is co-prime to N. The modulus randomization technique then simply consists (1) in picking up a random integer k0, (2) in computing the exponentiation modulo k0 · N and (3) in reducing the result modulo N. where k0 is any (random) positive integer co-prime to N. Note that any integer lower than p and q is co-prime to N, and in particular, any integer of bit-length 64 (or less) is co-prime to N. The modulus randomization technique then simply consists (1) in picking up a random integer k0, (2) in computing the exponentiation modulo k0 · N and (3) in reducing the result modulo N. 136 Deep Learning to Evaluate Secure RSA Implementations 136 Deep Learning to Evaluate Secure RSA Implementations Input Randomization. The input randomization technique involved in our target imple- mentation can only be used jointly with the modulus randomization technique. It is based on the following equation: md mod N = ((m + k1 · N)d mod k0 · N) mod N, (2) (2) where k0 and k1 are any (random) positive integers, k0 being co-prime to N. The input randomization technique hence consists in picking a random integer k1 and adding k1 · N to the input m, before the exponentiation (modulo k0 · N). where k0 and k1 are any (random) positive integers, k0 being co-prime to N. The input randomization technique hence consists in picking a random integer k1 and adding k1 · N to the input m, before the exponentiation (modulo k0 · N). Exponent Randomization. This technique is based on the following equality: md mod N = md+k2·φ(N) mod N, (3) md mod N = md+k2·φ(N) mod N, (3) where φ denotes the Euler’s totient function, and where k2 is any (random) positive integer. In case of an RSA modulus N = p · q (with p and q prime), we have φ(N) = (p −1)(q −1). 2.2.1 Countermeasures The principle of the exponent randomization countermeasures is to pick a random integer k2 and evaluate the RSA exponentiation with exponent d′ = d + k2 · φ(N). Final Implementation. Values p and q are prime integers of bit-length 512. So the modulus N is a 1024-bit integer. The combination of the three masking countermeasures corresponds to the following computation: ((m + k1 · N)d+k2·φ(N) mod k0 · N) mod N, (4) (4) where m is the plaintext in Montgomery representation, k0, k1 and k2 are some random positive integers of bit-length 64. By consequence, the masked input m′ .= m + k1 · N, the masked modulus N ′ .= k0 · N used to perform the MMMs, the masked exponent d′ and all the values involved in the modular exponentiation have size n = 1024 + 64 = 1088 bits. This implementation is completed by the first step that transforms the plaintext in Montgomery representation m 7→˜m = m/R mod N ′) and the last step doing the inverse operation putting back the result in its natural integer form to obtain the ciphertext (see Sect. 2.1 for more details). 2.2.2 Implementation of the modular exponentiation The detailed implementation is given in Algorithm 1. It is based on a classical Square & Multiply Always strategy to get a processing flow which is independent of the exponent value. It uses 4 memory segments that respectively contain the input of the exponentiation and the intermediate values resulting from the bit-by-bit exponentiation precessing. These addresses are denoted by @(j) with j ∈[1..4]. At each loop, a squaring then a multiplication are always executed. So two computations are processed during the exponentiation: the true one is stored at address @(j) with j = segacc, whereas the dummy one is stored at address @(j) with j = segdum. The values of the two indices segacc and segdum vary according to the value of the exponent bit which is treated. Their updating is done without conditional branch thanks to the use of a third index segfree. Moreover the input is stored at address @(j) with j = segin and the value of segin does not vary during the processing. After the processing of Algorithm 1, the result is reduced modulo N to get the correct signature as described in (4). 2.3 Attack Paths It is here important to remember that, in both cases, the challenging point is to be able to successfully apply the attack to recover almost all the secret exponent bits by exploiting a single leakage trace (after profiling). This will be discussed in the second part of the paper. vertically (i.e. with several executions of the RSA processing). He has to mount an attack horizontally (i.e. with a single trace). The target implementation described in previous sections contains two main vulnerabilities which can be exploited in a profiled attack scenario. The first one focuses on the address indices manipulation and may be viewed as an example of address-bit DPA [IIT02, MDS99a], while the second one focuses on the operands’ manipulation and exploits the same principles as the horizontal collision attacks [BJPW13]. They are detailed in the next two sections. It is here important to remember that, in both cases, the challenging point is to be able to successfully apply the attack to recover almost all the secret exponent bits by exploiting a single leakage trace (after profiling). This will be discussed in the second part of the paper. 2.3 Attack Paths As the use of randomization techniques breaks the dependency between the intermediate values of the processing and the side-channel observations, an attacker cannot work Carbone, Conin, Cornélie, Dassance, Dufresne, Dumas, Prouff, Venelli 137 Algorithm 1 Modular Exponentiation Square & Multiply Always Algorithm 1 Modular Exponentiation Square & Multiply Always Require: the masked input m′ in Montgomery representation, the masked exponent d′ of size n bits, the function MMM initialized with the modulus N ′ and the Montgomery factor R, and four memory segments @(j) with j ∈[1..4]. Ensure: address @(1) contains m′ d′ mod N ′ 1: @(1) ←m 2: @(2) ←1 3: segin ←1 4: segacc ←2 5: segdum ←3 6: for i = 0 to n −1 do 7: s ←d′[n −1 −i] ▷Read from left to right 8: segfree ←9 −segacc −segdum 9: MMM(segfree, segacc, segacc) ▷SQUARE 10: segacc ←segfree 11: segfree ←9 −segacc −segdum 12: MMM(segfree, segacc, segin) ▷MULTIPLY 13: segacc ←s × segfree + (1 −s) × segacc 14: segdum ←s × segdum + (1 −s) × segfree 15: @(segdum) ←1 16: MMM(segacc, segacc, segdum) ▷Montgomery representation to integer normal form 17: @(1) ←@(segacc) 1: @(1) ←m 2: @(2) ←1 3: segin ←1 4: segacc ←2 5: segdum ←3 6: for i = 0 to n −1 do 7: s ←d′[n −1 −i] ▷Read from left to right 8: segfree ←9 −segacc −segdum 9: MMM(segfree, segacc, segacc) ▷SQUARE 10: segacc ←segfree 11: segfree ←9 −segacc −segdum 12: MMM(segfree, segacc, segin) ▷MULTIPLY 13: segacc ←s × segfree + (1 −s) × segacc 14: segdum ←s × segdum + (1 −s) × segfree 15: @(segdum) ←1 16: MMM(segacc, segacc, segdum) ▷Montgomery representation to integer normal form 17: @(1) ←@(segacc) ▷Read from left to right ▷MULTIPLY vertically (i.e. with several executions of the RSA processing). He has to mount an attack horizontally (i.e. with a single trace). The target implementation described in previous sections contains two main vulnerabilities which can be exploited in a profiled attack scenario. The first one focuses on the address indices manipulation and may be viewed as an example of address-bit DPA [IIT02, MDS99a], while the second one focuses on the operands’ manipulation and exploits the same principles as the horizontal collision attacks [BJPW13]. They are detailed in the next two sections. 3Our SNR characterization of the EM measurements show that the sampling rate could have been maybe smaller without too much impacting the attack efficiency, but we did not experimentally validate this observation. 2.3.2 Operands’ Manipulations Another attack path is based on a property of the algorithm Square & Multiply Always. Indeed, when the exponent bit d′[n −1 −i] treated at loop index i is zero, then the multiplication is useless and hence, the result is thrown. This implies that the subsequent operation (a squaring) shares an operand with the previous multiplication. If, at the opposite, d′[n −1 −i] equals 1, then the multiplication and the subsequent squaring are not likely to share the same operand because the result of one is the entry of the other one. This property is convenient to retrieve the involved bit of the secret exponent. Indeed, if we denote by asq. i (resp. amult. i ) the left-hand side operand of the squaring at loop index i (resp. of the multiplication at loop index i), this attack path consists in comparing amult. i and asq. i+1 in order to retrieve the bit exponent d′[n −1 −i] at loop i. 2.3.1 Address Indices Manipulation. segfree = #offset + #dec(i) segfree = #offset + #dec(i) 0 0 2 + 2 2 + 0 1 0 2 + 1 2 + 2 2 1 2 + 0 2 + 1 3 1 2 + 0 2 + 1 4 1 2 + 0 2 + 1 5 0 2 + 0 2 + 1 6 1 2 + 2 2 + 0 7 1 2 + 2 2 + 0 8 0 2 + 2 2 + 0 9 0 2 + 1 2 + 2 Table 1: Registers Manipulation (Example). i d′[n −1 −i] segfree during squaring segfree during mult. segfree = #offset + #dec(i) segfree = #offset + #dec(i) 0 0 2 + 2 2 + 0 1 0 2 + 1 2 + 2 2 1 2 + 0 2 + 1 3 1 2 + 0 2 + 1 4 1 2 + 0 2 + 1 5 0 2 + 0 2 + 1 6 1 2 + 2 2 + 0 7 1 2 + 2 2 + 0 8 0 2 + 2 2 + 0 9 0 2 + 1 2 + 2 as follows: as follows: #dec(i + 1) =  #dec(i) −(1 −d′[n −1 −i]) mod 3 , for the squaring #dec(i) + 2(1 −d′[n −1 −i]) mod 3 , for the multiplication , (5) (5) with #dec(0) equalling 2 and 0 respectively for the squaring and the multiplication. with #dec(0) equalling 2 and 0 respectively for the squaring and the multiplication. Table 1 gives an illustration of the dependency between the exponent bits and the consecutive values of #dec(i) when the 10 most significant bits of d′ equal 0011101100. Table 1 gives an illustration of the dependency between the exponent bits and the consecutive values of #dec(i) when the 10 most significant bits of d′ equal 0011101100. 2.3.1 Address Indices Manipulation. The exponentiation Square & Multiply Always described in Algorithm 1 contains a potential vulnerability related to the manipulation of the index segfree (that is linked to the memory address where the result of the Montgomery multiplication is stored). It may be observed that the address index segfree can take three different values (theoretically unknown); in other terms, segfree successively belongs to three different classes during the whole modular exponentiation. Remarkably, the sequence of classes depends on the exponent bits, and we will see that this dependency may be exploited to recover sensitive information. More precisely, segfree stays unchanged for two consecutive exponentiation loop indices i and i + 1 if and only if the corresponding exponent bit d′[n −1 −i] equals 1. Thus, by knowing whether segfree stays in the same class or not, an attacker may learn the values of all the exponent bits except the last one. From a more formal point of view, it may be checked that the value of segfree at input of the MMM processing during the ith squaring (resp. during the ith multiplication) takes the form 2+#dec(i) where, for every i in [0..n−2], the value #dec(i) is recursively defined Deep Learning to Evaluate Secure RSA Implementations 138 Table 1: Registers Manipulation (Example). i d′[n −1 −i] segfree during squaring segfree during mult. segfree = #offset + #dec(i) segfree = #offset + #dec(i) 0 0 2 + 2 2 + 0 1 0 2 + 1 2 + 2 2 1 2 + 0 2 + 1 3 1 2 + 0 2 + 1 4 1 2 + 0 2 + 1 5 0 2 + 0 2 + 1 6 1 2 + 2 2 + 0 7 1 2 + 2 2 + 0 8 0 2 + 2 2 + 0 9 0 2 + 1 2 + 2 Table 1: Registers Manipulation (Example). i d′[n −1 −i] segfree during squaring segfree during mult. 3 Presentation of the Acquisitions Campaign For the two attack paths identified in previous section, it is important to precisely identify in each trace/observation the sub-parts corresponding to the MMM processings. In the next sections, we show how this can be done for both the power consumption and electromagnetic measurements, in the context of a defensive arithmetic co-processor. In the first (Icc) case, the measurements correspond to the full RSA processing, while they only correspond to the processing of the 7 MSB of the exponent in the second (EM) case. This difference is a direct consequence of the fact that our EM attacks (that target internal operations of the co-processor) required measurements at a much greater sampling rate than that needed for our Icc attacks (namely 2.5 GS/s versus 50 MS/s).3 Carbone, Conin, Cornélie, Dassance, Dufresne, Dumas, Prouff, Venelli 139 3.1 Power Consumption Measurements A first acquisition campaign has been launched to measure the power consumption (Icc) during the processing of the RSA implementation described in previous section (namely Algorithm 1 with masked exponents, masked messages and masked moduli of size n = 1088 = 1024 + 64). The power consumption (Icc) was measured at 50 MS/s using a Lecroy WaveRunner 625Zi oscilloscope. This (low) sampling rate suggests that an alternative to the traditional bench-top oscilloscope, e.g. a PC oscilloscope such as Picoscope, could have been used in the present case. p , p Each acquisition, denoted by L, was composed of around 25, 000, 000 time samples that have been split into 2n sub-traces L0, ..., L2n−1. This splitting has been done by following a so-called correlation pattern matching [VKMJ10] approach (i.e. the signal pattern corresponding to the MMM is correlated as a sliding window with the full trace, then the maximums of correlation allow the extraction of the different occurrences of patterns from the trace). A new set has been rebuilt with these patterns ensuring a per multiplication fast resynchronization (see Figure 2a and Figure 2b). Afterwards, each of these multiplication patterns has been pre-processed, i.e. decimated by a factor 5 after being filtered by a linear low pass filter (see Figure 2c). The resulting MMM processing sub-traces Lj are each composed of around 2, 247 time samples after this pre-processing step. Note that the pre-processing step, e.g. the choice of the decimation parameter, was guided by the strength of the resulting univariate first-order leakage assessment (see Subsubsection 4.1.1). This allows us to get a stronger leakage strength for the attacks with a lower computation cost. Finally all the MMM processing sub-traces Lsq. i corresponding to a squaring (i.e. defined s.t. Lsq. i = L2i) have been gathered into a same set, and the same processing has been done for the sub-traces Lmult. i corresponding to a multiplication (i.e. defined s.t. Lmult. i = L2i+1). The fact that the mean of 100 sub-traces does not fade away (see Figure 2c) was considered as a valuable experimental validation of our resynchronization effectiveness. The campaign and the pre-treatment have been repeated on several smart-cards. 3.2 Electromagnetic Measurements A second acquisition campaign has been launched to measure the electromagnetic emanations during the processing of the seventh most significant bits of the masked exponent of the RSA. The implementation was similar to that targeted in previous section (namely the masked modulus, the masked message and the masked exponent were all of size 1088 bits). The signal has been acquired with a 2.5 GS/s sampling rate over 200 µs (see Figure 3 for the processing of the 7 first MSB of the exponent). Each acquired trace was composed of 5, 000, 000 time samples which correspond to the 7 MSB of the masked exponent. A standard laboratory equipment has been used to perform the campaign (Lecroy WaveRunner 625Zi oscilloscope and Langer ICR EM probe). An example of measurement is plotted in Figure 3. As done for the power consumption campaign, each trace has been roughly split into sub- traces Lj corresponding to MMM processings. Then, the latter traces have been reorganized to group all the sub-traces Lsq. i corresponding to a squaring in one set and all sub-traces Lmult. i corresponding to a multiplication in another set (due to the regularity of Algorithm 1, Lsq. i = L2i and Lmult. i = L2i+1). In the following, we however continue to use the notation Lj when the discussion is valid whatever the nature of the operation. As it may be observed in Figure 4, two peculiar types of patterns can be identified in each sub-trace Lj: the first one corresponds to the initialization of the operation which Deep Learning to Evaluate Secure RSA Implementations 140 (a) Illustration of a part of the signal, with the succession of squaring and multiplication by MMM processing. (b) A single MMM. (c) Mean of 100 MMM processing patterns after filtering and decimation by a factor 5. Figure 2: Alignment steps of the MMM processing traces. (a) Illustration of a part of the signal, with the succession of squaring and multiplication by MMM processing. (b) A single MMM. (a) Illustration of a part of the signal, with the succession of squaring and multiplication by MMM processing. (b) A single MMM. (c) Mean of 100 MMM processing patterns after filtering and decimation by a factor 5. (c) Mean of 100 MMM processing patterns after filtering and decimation by a factor 5. Figure 2: Alignment steps of the MMM processing traces. e.g. 3.2 Electromagnetic Measurements includes Steps 7, 8, 10 and 11 in Algorithm 1, while the second one corresponds to the multi-precision MMM operation itself (squaring or multiplication). These two patterns are likely to contain information on the processed secret bit and they have therefore been analyzed. MMM initialization alignment. The parts corresponding to the MMM initialization have been extracted from each Lj. Each part contained around 30, 000 time samples. Figure 5a shows the overlapping of 10 such parts. A desynchronization is clearly observable, in particular around the two large EM peaks marked in red. Figure 5 presents the different resynchronization steps that have been followed to correct this issue. A first alignment step has been applied by fixing a threshold EM amplitude value and by aligning all EM traces when they reach this threshold. The dotted line in Figure 5 refers to the selected threshold. Figure 5b shows the traces after this first alignment step and it may be observed that the traces are indeed correctly aligned on the first large EM peaks (marked in green). However, a timing desynchronization is still present as EM peaks on the right part of the figure are clearly not aligned. Hence, another alignment step is required. Figure 5c shows traces after the application of a so-called sliding correlation alignment method which may be viewed as a variant of the correlation pattern matching approach [VKMJ10] applied in previous section. It first consists in selecting a small timing window on a reference EM trace and in setting maximum shift offsets. Then, for each shift, Pearson’s correlation is computed between the current trace to align and the reference trace for the given window. The maximum correlation value implies that a correct shift has been found. Then, the window slides over time and the algorithm is re-applied. This technique allows for the realigning of traces in cases where the desynchronization changes over time. Carbone, Conin, Cornélie, Dassance, Dufresne, Dumas, Prouff, Venelli 141 Figure 3: Sequence of MMM processings for the first MSBs of the exponent. Figure 4: EM emanation during a single loop of Algorithm 1. Figure 3: Sequence of MMM processings for the first MSBs of the exponent. Figure 3: Sequence of MMM processings for the first MSBs of the exponent. Figure 4: EM emanation during a single loop of Algorithm 1. Figure 4: EM emanation during a single loop of Algorithm 1. MMM operation alignment. 3.2 Electromagnetic Measurements The EM patterns corresponding to the MMM squaring operation have also been extracted from each sub-trace Lsq. i and then resynchronized. The size of those patterns was roughly 300, 000 time samples (ten times more compared to the initialization). Figure 6 presents the different resynchronization steps needed to obtain aligned traces. Figure 6a shows the overlapping of 10 extracted patterns. As expected, it may be observed that the MMM multi-precision operation is composed of small sub- operations (marked in black) which correspond to the arithmetic co-processor unitary operations. Figure 6b shows a zoom on some of these sub-operations. As previously, a timing desynchronization is observable. Hence, the same sliding correlation alignment technique has been applied. Figure 6c presents some overlapped traces after this alignment, zoomed on some sub-operations. The sub-operations are clearly aligned with each others and over time during the whole MMM operation. After all realignment steps, no trace was discarded for both the dataset containing the MMM-initialization patterns and the dataset containing the MMM-operation patterns. This is due to the fact that no strong desynchronization countermeasures are implemented. The campaign and the pre-treatment have been repeated on several smart-cards. Figure 5: Alignment steps of the MMM pre-processing traces. not clear whether the address indices leak during their manipulation by the CPU or by the arithmetic co-processor (without full open access to the code, such a conclusion is actually difficult to draw). Secondly, we have verified that the EM sub-traces (and more precisely the portion related to the MMM processing part) contain enough information to test the attack related to the operand’s manipulation (Subsubsection 2.3.2). 4 Leakage Assessment To verify that the (Icc and EM) sub-traces pre-processed as detailed in Subsection 3.1 and Subsection 3.2 contain information that are exploitable to test the attack paths presented in Subsection 2.3, a leakage assessment has been done. First, we have verified that both Icc and EM sub-traces could be used to perform the attack related to the address indices manipulation (Subsubsection 2.3.1). From this leakage assessment, it is Deep Learning to Evaluate Secure RSA Implementations 142 (a) Raw traces overlapped. (b) Traces after the first alignment step. (c) Traces after the second alignment step. Figure 5: Alignment steps of the MMM pre-processing traces. (b) Traces after the first alignment step. (c) Traces after the second alignment step. (c) Traces after the second alignment step. Figure 5: Alignment steps of the MMM pre-processing traces. 4.1.1 Power Consumption To characterize the information leakage, a univariate first-order leakage assessment related to the first attack path identified in Subsection 2.3 has been launched on 2, 016 RSA processing observations pre-treated as described in Subsection 3.1. This led to two labelled databases of sub-traces (Lsq. i )i⩽1088×2016 and (Lmult. i )i⩽1088×2016 respectively corresponding to squarings and multiplications with the MMM routine. By using the fact that the random masks and the secret exponents were known, the Normalized Inter-Class Variance (NICV) [BDGN14] has been estimated for all the 2, 247 time samples composing the sub-traces in each dataset. The goal is to detect statistical dependency with the value of the memory index segfree. We recall that the NICV at time sample t, denoted by NICV[t], is defined as: NICV[t] .= 1 1 SNR[t] + 1 , with SNR[t] = Vsegfree[E[Lsq. | segfree]] Esegfree[V[Lsq. | segfree]] or SNR[t] = Vsegfree[E[Lmult. | segfree]] Esegfree[V[Lmult. | segfree]] , where Lsq. (res. Lmult.) denotes the random variable associated to the observations (Lsq. i )i (resp. (Lmult. i )i). NICV[t] .= 1 1 SNR[t] + 1 , with SNR[t] = Vsegfree[E[Lsq. | segfree]] Esegfree[V[Lsq. | segfree]] or SNR[t] = Vsegfree[E[Lmult. | segfree]] Esegfree[V[Lmult. | segfree]] , where Lsq. (res. Lmult.) denotes the random variable associated to the observations (Lsq. i )i (resp. (Lmult. i )i). where Lsq. (res. Lmult.) denotes the random variable associated to the observations (Lsq. i )i (resp. (Lmult. i )i). The NICV has also been computed with respect to the value of the masked exponent bit associated to a multiplication processing (i.e. dataset (Lmult. i )i). For comparison purpose, the three characterizations are plotted on top of each other in Figure 7. Carbone, Conin, Cornélie, Dassance, Dufresne, Dumas, Prouff, Venelli 143 (a) Raw traces overlapped. (b) Zoom on some sub-operations. (c) Aligned traces zoomed on some sub- operations. Figure 6: Alignment steps of the MMM operations traces. Figure 7: Icc Campaign – NICV scores w.r.t. time samples; in blue, segfree values for Lsq., in orange segfree values for Lmult., in magenta the exponent bit values for Lmult.. (a) Raw traces overlapped. (b) Zoom on some sub-operations. (c) Aligned traces zoomed on some sub- operations. Figure 6: Alignment steps of the MMM operations traces. (a) Raw traces overlapped. (b) Zoom on some sub-operations. (c) Aligned traces zoomed on some sub- operations. Figure 6: Alignment steps of the MMM operations traces. (a) Raw traces overlapped. 4.1.1 Power Consumption (b) Zoom on some sub-operations. (a) Raw traces overlapped. (c) Aligned traces zoomed on some sub- operations. (c) Aligned traces zoomed on some sub- operations. Figure 6: Alignment steps of the MMM operations traces. Figure 6: Alignment steps of the MMM operations traces. Figure 7: Icc Campaign – NICV scores w.r.t. time samples; in blue, segfree values for Lsq., in orange segfree values for Lmult., in magenta the exponent bit values for Lmult.. Figure 7: Icc Campaign – NICV scores w.r.t. time samples; in blue, segfree values for Lsq., in orange segfree values for Lmult., in magenta the exponent bit values for Lmult.. The most significant information leakage (orange trace) is found for segfree and a MMM processing corresponding to a multiplication (i.e. random variable Lmult.). This makes segfree as a leakage of choice to perform SCA: leakages related to segfree during a squaring (blue trace) is significantly smaller and also leakages related to the bits of the randomized exponent associated to the multiplications patterns (magenta trace). The NICV computations performed on another cards reveal similar leakages and no significant difference has been found. Deep Learning to Evaluate Secure RSA Implementations 144 4.1.2 Electromagnetic First order univariate leakage assessment has also been conducted on 45, 000 electro- magnetic traces acquired as described in Subsection 3.2. For both sets of sub-traces (Lsq. i )i<7×45,000 and (Lmult. i )i<7×45,000, a SNR characterization has been performed w.r.t. the value of register index segfree. Exploiting the observation reported in Subsection 3.2, the SNR has only been computed on the first 30, 000 points of the sub-traces (which correspond to the MMM initializations). Figure 8 shows, on top and for temporal reference, an original aligned EM trace of the initialization part of the Lsq. i sub-traces and, on bottom, the corresponding SNR results. Figure 8: EM Campaign – SNR result for the segfree value versus the squaring initialization (bottom) and original EM trace (top). Figure 8: EM Campaign – SNR result for the segfree value versus the squaring initialization (bottom) and original EM trace (top). The SNR is around 55.10−2 for the best points of interest. The corresponding points will be used in our deep learning attacks reported in Subsection 5.2. A similar leakage assessment has also been performed on another card. The SNR results are very similar between the two cards. However, a temporal shift between SNR peaks has been observed (see Figure 9). This shift is due to a clock frequency variation between cards. This difference has to be compensated in order to be able to utilize traces from different cards during the side-channel analysis. It can be done by detecting every electromagnetic peak of every original trace and recreating a new trace by concatenating same length intervals around the peaks. 4Since this operand is assumed to have size 1088 = 34 × 32, the number of 32-bits words per 1088-bits operand, and hence the number of guessed bits, is 34. 4.2 Operands’ Manipulations In order to apply the attack path described in Subsubsection 2.3.2 on EM leakages, one must be able to recover enough information on the left-hand side operand value of each MMM operation from the corresponding sub-traces Lmult. i and Lsq. i pre-treated as explained in Subsection 3.2 (50, 000 traces have been used, each composed of around 300, 000 time samples). Since the co-processor performs elementary operations on 32-bits words, it seemed to be sound to focus on a specific 32-bit (sub)-word of each target operand (whose bit-length was 1088 for our experiments). In Figure 10 (top), it may first be observed that the leakage of the 32 bits of a single word of the left-hand side operand during a MMM processing Carbone, Conin, Cornélie, Dassance, Dufresne, Dumas, Prouff, Venelli 145 Figure 9: EM Campaign – SNR results on MMM initialization traces using segfree value on 2 different cards. Figure 9: EM Campaign – SNR results on MMM initialization traces using segfree value on 2 different cards. is unbalanced. Indeed the amplitude of the SNR for the 12th less significant bit of the word is almost hundred times greater than that of the others. Moreover, and as expected, this bit leaks at many different locations. Figure 10 (bottom) secondly shows that these characteristics are true for all the 32-bits words composing the MMM operand. It also shows that the SNRs corresponding to the 12th bit of the 34 words are not exactly located at the same time samples. Due to our first observation, we decided to restrict the recovery to the most leaking bits, i.e. all the 12th bits of the 32-bits words composing the operand.4 As a consequence of our second observation, a different set of points of interest has been recorded for the 12th bit of each operand word. Deep Learning to Evaluate Secure RSA Implementations 146 Figure 10: Monobit SNRs (on 50, 000 traces) for the first operand of the MMM. Top: 32 SNR traces for each bit of the least significant 32-bit word. Bottom: 34 SNR traces for all the 12th bit of each 32-bit sub-word of the operand. Figure 10: Monobit SNRs (on 50, 000 traces) for the first operand of the MMM. Top: 32 SNR traces for each bit of the least significant 32-bit word. Bottom: 34 SNR traces for all the 12th bit of each 32-bit sub-word of the operand. 5.1 Registers Manipulation (Power Consumption) To exploit the information revealed by the characterization described in Subsubsection 4.1.1, several acquisition campaigns with a RSA masked modulus of bit-length n = 1088 have been launched with a sampling rate equal to 50 MS/s. Three different samples of the target smart-card have been used, which led to split the acquisitions sets as follows: • Set C0: the card #0 is used for the profiling/training stage over the 100 first multiplication patterns from the modular exponentiation. The power consumption has been measured for 2, 016 RSA execution. Hence, the set is composed of 201, 600 = 2, 016 × 100 multiplication patterns. • Set C1: the card #1 is used as an evaluation/validation set for the training of deep learning algorithms. The 100 first multiplication patterns of 30 traces have been recorded. The set is hence composed of 3, 000 multiplication patterns. • Set C2: the power consumption of a full randomized modular exponentiation has been measured on card #2. It is the attacked set for the exploitation/testing stage. The set is composed of 1088 multiplication patterns. For comparisons, several profiled approaches have been tested on the campaigns. They have been performed on a 256 Gb RAM calculation server with NVIDIA Tesla P100- PCIE-16Gb. The scores listed in the following table for all the attacks correspond to the percentage of all the 1088 exponent bits which are revealed once the attack has been performed against segfree for a single trace in our set C2. Some of the attacks listed above are very impacted by the size of the sub-traces on which they are applied (e.g. TA or KNN). To get a fair comparison, all the profiled attacks have hence been performed after reducing the sub-traces Lmult. i to 9 Points of Interest (POI for short) selected thanks to the characterization described in Subsubsection 4.1.1 (see Figure 7). We insist here on the fact that, after resynchronization, this is exactly the same points which are kept for all the sub-traces (used for profiling or for attack). Carbone, Conin, Cornélie, Dassance, Dufresne, Dumas, Prouff, Venelli 147 Table 2: Attacks success rates (left), loss and accuracy for the CNN training (right). 5.2 Registers Manipulation (EM) To exploit the information revealed by the characterization described in Subsubsection 4.1.2, deep learning attacks targeting the value of the register segfree have then been applied on the electromagnetic measurements. For this attacks’ campaign, taking into account the comparisons’ results presented in previous section, we chose to only test MLP and CNN architectures. Since it was no longer needed to scale the dimension of the exploited traces to comply with the capacity of other profiling techniques, this choice allowed us to test the efficiency of the latter models almost directly on the squaring initialization sub-traces identified in Subsection 3.2. In other words we did not select a small number of POI and directly took the 13, 000 first time samples among 30, 000 in the MMM initialization pattern of each sub-trace (the SNR characterization reported in Subsection 4.2 indeed shows that the amount of useful information in the second half of the sub-traces is much less than that in the first half). The training and testing have been done on a high-end desktop PC, composed notably of 128 Gb RAM and an NVIDIA TITAN Xp graphics card. Similarly as reported in Subsection 5.1, the architectures and the hyper-parameters have been searched by exhaustively testing all values in specific intervals carefully chosen to bound the overall computational effort. First, the profiled attacks have been tested on the sub-traces re-aligned as described in Subsection 3.2. Then, to validate the robustness of CNN models to de-synchronization effects, they have also been tested on raw sub-traces without specific re-alignment. Aligned traces. For the training phase, datasets of 750, 000 aligned traces acquired on the 3 different cards have been grouped to form the training dataset C0 and the validation dataset C1 (10% of the training dataset). For the testing phase, a dataset C2 of 10, 000 aligned traces acquired on a fourth card has been built. The whole 13, 000 first time samples of the sub-traces described in Subsection 3.2 are used to input the models. A first standardization step [GBCB16, Section 12.2.1] has been applied on the datasets in order to help the training by cancelling the mean of each sample and by equalizing the covariances (see also [LBOM12]). To get a rough idea of the impact of the different architectures and hyper-parameters tuning on the model accuracy, the generation of ten random models has been launched. 5.1 Registers Manipulation (Power Consumption) Attack type Best score Template attack (TA) [CJRR99] 83.4% Random Forest [MLB11] 93.1% Support Vector Machine [HGM+11, ZGLG14] 97.1% MLP [HGM+11, MDM16] 98.38% K-Nearest Neighbors (KNN) [Bis07] 98.7% Extreme Gradient Boosting [Bis07] 98.7% Convolutional Neural Network [Bis07] 99.31% Table 2: Attacks success rates (left), loss and accuracy for the CNN training (right). y g ( g ) For template attacks, and following the analysis done in [FR14], different considerations regarding the covariance matrix have been tested: no covariance matrix (i.e. replaced by identity matrix), a covariance matrix for each class, common “pooled” covariance matrix (i.e. average of the covariance matrices over all the classes). Neural networks and machine learning parameters have been optimized using various approaches such as grid search and Bayesian optimization (see e.g. [BB12] for an argumentation of this approach). More specifically hyperas/hyperopt library [Pum18, Ber18] was used for CNN. The CNN has been trained with the acquisitions in set C0. The acquisitions in C1 have been used as an evaluation set. The obtained training accuracy is 99.64% while the accuracy for the evaluation set is 99.27%. The figure in Table 2 gives the evolution of the accuracy and the loss as a function of the number of epochs, for both the training and validation sets. We recall that the accuracy evaluates how accurate is the model prediction compared to the given (true) labelling, while the loss (which is the value that aims to be minimized during the training) is a summation of the errors made when comparing the trained algorithms outputs and the (true) labels. Remarkably, the results immediately converge around 99% and over-fitting on the validation set quickly arises; it is thus decided to stop the learning very quickly, at epoch 7. After the recovery of 99.31% of the full randomized exponent, the wrong guesses can be corrected thanks to [SW14b]. To apply the latter correction, the attack has to be repeated against 15 full randomized exponents (i.e. 15 full RSA processings) to reveal the secret exponent in clear. The architectures of the trained MLP and CNN models are given in Figure 11 and Figure 12. Figure 11: Architecture of the best trained MLP Figure 11: Architecture of the best trained MLP Deep Learning to Evaluate Secure RSA Implementations 148 Figure 12: Architecture of the best trained CNN Figure 12: Architecture of the best trained CNN 5.2 Registers Manipulation (EM) Each model has been trained over 3 epochs and this process has been done for both MLP and CNN architectures. Then, different metrics (as e.g. the accuracy and the loss) have been involved to compare them and to eventually select the best parameters. For each of the ten networks, these metrics have been analysed in order to assess the performance of the networks with regards to their architecture (number of layers, number of neurons per layers, etc.) and their hyper-parameters (learning Carbone, Conin, Cornélie, Dassance, Dufresne, Dumas, Prouff, Venelli 149 rate, regularization rate, etc.). This analysis has allowed us to identify the best network parameters and hyper-parameters amongst the randomly generated ones. In a second step, the selected MLP and CNN models have been selected and directly applied to the 10, 000 sub-traces in dataset C1. The accuracy of the best MLP model and CNN model was respectively 99.87%, and 99.7%. The architecture of the best MLP model is given in Figure 13a and the best CNN model is given in Figure 13b. (a) Best MLP architecture (b) Best CNN architecture Figure 13: Best neural networks architectures on aligned traces. (a) Best MLP architecture (a) Best MLP architecture (b) Best CNN architecture (b) Best CNN architecture (a) Best MLP architecture Figure 13: Best neural networks architectures on aligned traces. A more in-depth tuning of the hyper-parameters has been launched on the best CNN model in order to improve it. In particular, the number of epochs, the batch size, the optimizer algorithms have been tested thoroughly. Finally, different initialization weights have been set for the architectures, hence resulting in different initial conditions for the networks. An ensemble learning technique [Zho12, Section 4.2] has then been applied on the different initialized networks. Several copies of the same network with different initializations have eventually been trained and their results have been averaged (aka cross-validated). The best CNN model has then been repeated 3 times using this ensemble learning method. This technique gave the best accuracy for our CNN model, namely 99.91%. Raw traces. One of the main advantages of the CNN models is the temporal invariance of the convolution layers. This theoretically allows neural networks to be immune against desynchronization. Therefore, CNN models have also been trained on 750, 000 electro- magnetic traces without the alignment steps (corresponding to Figure 5b) and applied to 10, 000 traces from another card. 5.2 Registers Manipulation (EM) Contrary to the aligned traces case, the standardization pre-processing technique has no sense on desynchronized traces. Hence, the datasets values have only been scaled in the range [0, 1]. Then, a random search over 20 networks has been launched. The training has been performed over 10 epochs (instead of 3 due to the greater difficulty for the networks in finding relevant patterns in desynchronized data). On aligned traces, most of randomly generated architectures gave significant results. Here, only a few of the 20 generated architectures gave high accuracies (> 90%). The best model accuracy was only 93.3%. To improve it, a new layer called batch normalization [IS15] has been integrated. This additional layer has been included in the random architecture search and 10 new neural networks have been generated. Using the batch normalization layers in CNN models, the best model accuracy was 97.7%. The architecture of the best CNN model with batch normalization is given in Figure 14. Table 3 summarizes the accuracy of the deep learning attacks targeting the register The architecture of the best CNN model with batch normalization is given in Figure 14 Table 3 summarizes the accuracy of the deep learning attacks targeting the registe Deep Learning to Evaluate Secure RSA Implementations 150 Figure 14: Best CNN with batch normalization architecture on raw traces. Figure 14: Best CNN with batch normalization architecture on raw traces. manipulation on the electromagnetic traces. The percentage corresponds to the ability of the trained model to recover a bit of the masked exponent. A success rate of 97% (or greater) is considered to be sufficient to recover the full exponent with non-negligible probability (possibly combined with techniques as in [SW14a]). manipulation on the electromagnetic traces. The percentage corresponds to the ability of the trained model to recover a bit of the masked exponent. A success rate of 97% (or greater) is considered to be sufficient to recover the full exponent with non-negligible probability (possibly combined with techniques as in [SW14a]). Table 3: Attacks summary. Attack type Best score Multi-Layer Perceptron on aligned traces 99.7% Convolutional Neural Network on aligned traces 99.91% Convolutional Neural Network on raw traces 97.7% Table 3: Attacks summary. Attack type Best score Multi-Layer Perceptron on aligned traces 99.7% Convolutional Neural Network on aligned traces 99.91% Convolutional Neural Network on raw traces 97.7% 5.3 Values Manipulation (EM) Based on the analysis recalled in Subsection 4.2, the goal is to recover, from two EM leakages Lmult. i and Lsq. i+1, the twelve bit of each of the 34 words composing the two left-hand side operands amult. i and asq. i+1 of consecutive MMM processings, before performing a comparison between the two bit sets and decide whether amult. i equals asq. i+1 or not (which directly gives the corresponding exponent bit, see Subsubsection 2.3.2). First stage: training. For the reasons discussed in Subsection 4.2, for each of the 34 words, a new model has been trained to recover the 12th bit from a single observation. The database C0 for the training was composed of 10, 000 traces, each of size of 300, 000 time samples corresponding to a single MMM processing. Since the latter size was unnecessarily too high, the SNR characterization reported in Subsection 4.2 has been priorly used to reduce them to 5, 000 points of interest, which were different for each word. This led to the definition of 34 training databases of 10, 000 traces composed of 5, 000 samples: the first 8, 000 traces were dedicated to the training, while the remaining 2, 000 traces were used for validation. The traces in the i-th database are labelled by the 12th bit of the i-th word of the left-hand side operand of the corresponding MMM processing. Then, the CNN model depicted on Figure 15 has been trained onto each database. As for previous trainings, we observed that the validation accuracy quickly converged to the training accuracy (after only 2 epochs). Second stage: guessing values. The 34 trained models have then then been tested on a new test database C2 composed of 1, 400 traces corresponding to different single MMM Carbone, Conin, Cornélie, Dassance, Dufresne, Dumas, Prouff, Venelli 151 Figure 15: CNN architecture. Figure 15: CNN architecture. processings. Before each of the 34 tests, the traces have been reduced to 5, 000 samples by selecting the corresponding points of interest identified during the signal characterization. For the 1, 400 traces, the success rate of our 34 models ranges from 88% to 99.5%, with an average of 95%. Third stage: recovering the exponent bit. Eventually, the attack is performed on a single trace. 5.3 Values Manipulation (EM) For each exponent bit d′[n −1 −i], i ∈[1..n −1], two values have to be recovered, so the 34 trained models are applied twice, on Lmult. i and on Lsq. i+1. Before each of the 2×34 attacks, the two targeted sub-traces are reduced to 5, 000 samples by selecting the same points of interest. Based on the 2 × 34 guessed bits, our purpose was to decide if the left-hand side operands collide or not. Given the average accuracy of our 34 models (to correctly recover the twelve bit of a given 32-bits word), it may be checked that only 26 bits (or more) among the 34 ones have to be equal in order to accurately decide that there is a collision or a non-collision, and hence that the corresponding exponent bit is 1 or 0 (a detailed argumentation of this point is given in Appendix A). Eventually, with a recovering of 34 bits of each operand with an average success rate of 95%, we were able to recover all the exponent bits with a success rate close to 100% (except for the least significant one which was recovered by exhaustive testing). 6 Conclusion A careful analysis of the security and efficiency of these countermeasures and/or the design of new ones are open avenues for further research. 6 Conclusion In this paper, the results of several profiled/supervised side-channel attacks against a secure implementation of the RSA algorithm have been described and discussed. The implementation was running on a ARM Core SC 100 with a secure arithmetic co-processor. The work has been co-jointly done by three different teams, each working on a specific attack path. For completeness, and because this information is often missing in the literature while being of important practical interest, we have detailed all the attack steps (identification of the attack paths, acquisitions, pre-processing, attacks) that are usually followed to evaluate the security of an implementation in a security laboratory. The attacks results, which exploit different types of leakages measured either through the power consumption or the electromagnetic emanation of the devices, show the high potential of 152 Deep Learning to Evaluate Secure RSA Implementations deep learning attacks (and in particular CNN models) against secure implementations of RSA. The architectures of the best trained models are given for information. They however strongly depend on the device, the targeted algorithm and the measurements campaigns, and even if some general design principles may be reused, it is very likely that they cannot be directly applied on a context differing on one of the latter points. Usually, a EAL4+ certified arithmetic co-processor leaks much less information than what was observed in this paper. We hence expect the attack to be more difficult to directly apply on devices certified in the SOG-IS scheme, especially if the security guidelines of the chip are correctly followed (which is verified by the evaluation laboratory during the testing of the software part). To remove the first attack path exploiting the dependence between the secret exponent bits and the variable addresses, countermeasures exist like e.g. the randomization of the roles of the registers used during the exponentiation [IIT03]. Dealing with the second attack path is more tricky. Replacing the Square & Multiply Always exponentiation algorithm by another one, like for instance the Montgomery Ladder [JY02, Mon87], is not a solution since collisions are still exploitable (as argued in [BJPW13]). A possible approach is to frequently re-randomize the internal state as proposed in [BJPW13] or to re-randomize the output of each modular operations as proposed in [DV11]. Another possibility is to mix (in a random order) several exponentiation routines. Acknowledgements The target implementation used in this paper to present the different attacks is part of a challenge organized by ANSSI’s laboratory of hardware security for industrial partners. It has been developed by CryptoExperts (https://www.cryptoexperts.com/) who delib- erately did not include countermeasures against horizontal and address-bit attacks. We would like to thank them, and also people who were involved in the project at ANSSI: Soline Renner, Manuel San-Pedro, Adrian Thillard and Jérôme Vidal. Eventually, we thank Victor Lomné from Ninjalab (https://ninjalab.io/) who performed preliminary tests to validate the challenge (and hence the target security). Christopher M. Bishop. Pattern Recognition and Machine Learning (Informa- tion Science and Statistics). Springer, 1 edition, 2007. References [Arr18] Common Criteria Recognition Arrangement. Common Criteria Portal. https: //www.commoncriteriaportal.org/, 2018. [BB12] James Bergsta and Yoshua Bengio. Random search for hyper-parameter optimization. Jounal of Machine Learning Research, 13(Feb):281–305, 2012. [BDGN14] Shivam Bhasin, Jean-Luc Danger, Sylvain Guilley, and Zakaria Najm. Side- channel leakage and trace compression using normalized inter-class variance. In Ruby B. Lee and Weidong Shi, editors, HASP 2014, Hardware and Archi- tectural Support for Security and Privacy, Minneapolis, MN, USA, June 15, 2014, pages 7:1–7:9. ACM, 2014. [Ber18] James Bergstra. Hyperopt: Distributed Asynchronous Hyperparameter Opti- mization in Python. https://github.com/hyperopt/hyperopt, 2018. [Bis07] Christopher M. Bishop. Pattern Recognition and Machine Learning (Informa- tion Science and Statistics). Springer, 1 edition, 2007. 153 Carbone, Conin, Cornélie, Dassance, Dufresne, Dumas, Prouff, Venelli [BJPW13] Aurélie Bauer, Éliane Jaulmes, Emmanuel Prouff, and Justine Wild. Horizontal and vertical side-channel attacks against secure RSA implementations. In Ed Dawson, editor, Topics in Cryptology - CT-RSA 2013 - The Cryptographers’ Track at the RSA Conference 2013, San Francisco,CA, USA, February 25- March 1, 2013. Proceedings, volume 7779 of Lecture Notes in Computer Science, pages 1–17. Springer, 2013. [BLR13] Timo Bartkewitz and Kerstin Lemke-Rust. Efficient Template Attacks Based on Probabilistic Multi-class Support Vector Machines. In Stefan Mangard, editor, Smart Card Research and Advanced Applications CARDIS, volume 7771 of Lecture Notes in Computer Science, pages 263–276. Springer Berlin Heidelberg, 2013. [BMV05] Lejla Batina, Nele Mentens, and Ingrid Verbauwhede. Side-channel issues for designing secure hardware implementations. In 11th IEEE International On-Line Testing Symposium (IOLTS 2005), 6-8 July 2005, Saint Raphael, France, pages 118–121. IEEE Computer Society, 2005. [BÖPV03] Lejla Batina, Siddika Berna Örs, Bart Preneel, and Joos Vandewalle. Hardware architectures for public key cryptography. Integration, 34(1-2):1–64, 2003. [BSS05] Ian F. Blake, Gadiel Seroussi, and Nigel P. Smart, editors. Advances in Elliptic Curve Cryptography, volume 317 of London Mathematical Society Lecture Note Series. Cambridge University Press, 2005. [CFG+10] Christophe Clavier, Benoit Feix, Georges Gagnerot, Mylène Roussellet, and Vincent Verneuil. Horizontal correlation analysis on exponentiation. In Miguel Soriano, Sihan Qing, and Javier López, editors, ICICS, volume 6476 of Lecture Notes in Computer Science, pages 46–61. Springer, 2010. [CJRR99] S. Chari, C.S. Jutla, J.R. Rao, and P. Rohatgi. A Cautionary Note Regarding Evaluation of AES Candidates on Smart-Cards. In Second AES Candidate Conference – AES 2, March 1999. [Cor99] J.-S. Coron. Resistance against Differential Power Analysis for Elliptic Curve Cryptosystems. In Koç and Paar [KP99], pages 292–302. [CRR02] S. Chari, J.R. Rao, and P. Rohatgi. References Template Attacks. In Kaliski Jr. et al. [KJKP02], pages 13–29. [DPRS11] Julien Doget, Emmanuel Prouff, Matthieu Rivain, and François-Xavier Stan- daert. Univariate Side Channel Attacks and Leakage Modeling. Journal of Cryptographic Engineering, 1(2):123–144, 2011. [DV11] Vincent Dupaquis and Alexandre Venelli. Redundant modular reduction algorithms. In International Conference on Smart Card Research and Advanced Applications, pages 102–114. Springer, 2011. [fIS18] Federal Office for Information Security. Minimum Requirements for Evalu- ating Side-Channel Attack Resistance of RSA, DSA and Diffie-Hellman Key Exchange Implementations. BSI, 2018. [FR14] Aurélien Francillon and Pankaj Rohatgi, editors. Smart Card Research and Advanced Applications - 12th International Conference, CARDIS 2013, Berlin, Germany, November 27-29, 2013. Revised Selected Papers, volume 8419 of Lecture Notes in Computer Science. Springer, 2014. Deep Learning to Evaluate Secure RSA Implementations 154 [GBCB16] Ian Goodfellow, Yoshua Bengio, Aaron Courville, and Yoshua Bengio. Deep learning, volume 1. MIT press Cambridge, 2016. [GBCB16] Ian Goodfellow, Yoshua Bengio, Aaron Courville, and Yoshua Bengio. Deep learning, volume 1. MIT press Cambridge, 2016. [GHO15] Richard Gilmore, Neil Hanley, and Máire O’Neill. Neural network based attack on a masked implementation of AES. In IEEE International Symposium on Hardware Oriented Security and Trust, HOST 2015, Washington, DC, USA, 5-7 May, 2015, pages 106–111. IEEE Computer Society, 2015. [Gir06] C. Giraud. An RSA Implementation Resistant to Fault Attacks and to Simple Power Analysis. IEEE Transactions on Computers, 55(9):1116–1120, September 2006. [HGM+11] Gabriel Hospodar, Benedikt Gierlichs, Elke De Mulder, Ingrid Verbauwhede, and Joos Vandewalle. Machine learning in side-channel analysis: a first study. J. Cryptographic Engineering, 1(4):293–302, 2011. [HZ12] Annelie Heuser and Michael Zohner. Intelligent machine homicide - breaking cryptographic devices using support vector machines. In Werner Schindler and Sorin A. Huss, editors, Constructive Side-Channel Analysis and Secure Design - Third International Workshop, COSADE 2012, Darmstadt, Germany, May 3-4, 2012. Proceedings, volume 7275 of Lecture Notes in Computer Science, pages 249–264. Springer, 2012. IIT02] K. Itoh, T. Izu, and M. Takenak. Address-bit Differential Power Analysis of Cryptographic Schemes OK-ECDH and OK-ECDSA. In Kaliski Jr. et al. [KJKP02], pages 129–143. [IIT03] Kouichi Itoh, Tetsuya Izu, and Masahiko Takenaka. A Practical Countermea- sure against Address-Bit Differential Power Analysis. In C.D. Walter, Ç.K. Koç, and C. Paar, editors, Cryptographic Hardware and Embedded Systems – CHES 2003, volume 2779 of Lecture Notes in Computer Science, pages 382–396. Springer, 2003. [IS15] [IS15] Sergey Ioffe and Christian Szegedy. Batch normalization: Accelerating deep network training by reducing internal covariate shift. References arXiv preprint arXiv:1502.03167, 2015. [JY02] M. Joye and S.-M. Yen. The Montgomery Powering Ladder. In Kaliski Jr. et al. [KJKP02], pages 291–302. [KJKP02] B.S. Kaliski Jr., Ç.K. Koç, and C. Paar, editors. Cryptographic Hardware and Embedded Systems – CHES 2002, volume 2523 of Lecture Notes in Computer Science. Springer, 2002. [KP99] Ç.K. Koç and C. Paar, editors. Cryptographic Hardware and Embedded Systems – CHES ’99, volume 1717 of Lecture Notes in Computer Science. Springer, 1999. [LBM14] Liran Lerman, Gianluca Bontempi, and Olivier Markowitch. Power analysis attack: an approach based on machine learning. IJACT, 3(2):97–115, 2014. [LBOM12] Yann LeCun, Léon Bottou, Genevieve B. Orr, and Klaus-Robert Müller. Efficient backprop. In Neural Networks: Tricks of the Trade (2nd ed.), volume 7700 of Lecture Notes in Computer Science, pages 9–48. Springer, 2012. [LMBM13] Liran Lerman, Stephane Fernandes Medeiros, Gianluca Bontempi, and Olivier Markowitch. A machine learning approach against a masked AES. In Francillon and Rohatgi [FR14], pages 61–75. 155 Carbone, Conin, Cornélie, Dassance, Dufresne, Dumas, Prouff, Venelli [LPB+15] Liran Lerman, Romain Poussier, Gianluca Bontempi, Olivier Markowitch, and François-Xavier Standaert. Template attacks vs. machine learning revisited (and the curse of dimensionality in side-channel analysis). In Stefan Mangard and Axel Y. Poschmann, editors, Constructive Side-Channel Analysis and Secure Design - 6th International Workshop, COSADE 2015, Berlin, Germany, April 13-14, 2015. Revised Selected Papers, volume 9064 of Lecture Notes in Computer Science, pages 20–33. Springer, 2015. [MAB+18] Maria Mushtaq, Ayaz Akram, Muhammad Khurram Bhatti, Maham Chaudhry, Muneeb Yousaf, Umer Farooq, Vianney Lapotre, and Guy Gogniat. Machine Learning For Security: The Case of Side-Channel Attack Detection at Run- time. In ICECS-2018, Bordeaux, France, December 2018. [MDM16] Zdenek Martinasek, Petr Dzurenda, and Lukas Malina. Profiling power analysis attack based on MLP in DPA contest V4.2. In 39th International Conference on Telecommunications and Signal Processing, TSP 2016, Vienna, Austria, June 27-29, 2016, pages 223–226. IEEE, 2016. [MDS99a] T.S. Messerges, E.A. Dabbish, and R.H. Sloan. Investigations of Power Analysis Attacks on Smartcards. In the USENIX Workshop on Smartcard Technology (Smartcard ’99), pages 151–161, 1999. [MDS99b] T.S. Messerges, E.A. Dabbish, and R.H. Sloan. Power Analysis Attacks of Modular Exponentiation in Smartcard. In Koç and Paar [KP99], pages 144–157. [Mem18] SOG-IS Members. SOG-IS Portal, 2018. [MLB11] Olivier Markowitch, Liran Lerman, and Gianluca Bontempi. Side channel attack: An approach based on machine learning. In 2nd International Workshop on Constructive Side-Channel Analysis and Secure Design, COSADE 2011, February 2011. [Mon87] P.L. Montgomery. A Optimal Number of Binary Collisions to Decide on the Operands’ Equality Assuming that 34 bits of two binary values have been correctly recovered with some probability, our goal is to optimize our ability to correctly assess that the two values are equal each other. A direct approach, named T, is to simply test whether the two returned sets of 34 bits equal or not and conclude about the collison. The success rate of T will increase with the success rates of the involved models. As all the 2 × 1088 bits are not known, we are not sure of success, but a complete recovering of each operand is not necessary to suspect a collision. The success rate of T depends on the probability to correctly guess the collision but also to correctly guess the non-collision. From 6 we remark the probability of false negative should decrease by considering less bits. This phenomenon is advantageous in a certain limit as the probability of false positive increases in the same time. A good compromise leads to the second strategy, named S, that consists in deciding the collision from the equality of possibly less bits among the 34 bits. Equation 7 shows that this number of bits which must match also depends on the success rates of the involved models. For instance, if this success rate is 95% (which is almost case for our experiments), then only 26 bits (or more) among the 34 ones have to be equal in order to accurately decide that there is a collision or a non-collision (and hence that the the corresponding exponent bit is 1 or 0). Proposition 1. We suppose the distribution of the values and the masked exponent is almost uniform, and the 68 attacks are independent. We denote p the probability to correctly predict a bit and α = p2 + (1 −p)2. The probability to correctly guess that amult. i = asq. i+1 and amult. i ̸= asq. i+1 from the equality of the 34 targeted bits (event named T) is estimated by: Proposition 1. We suppose the distribution of the values and the masked exponent is almost uniform, and the 68 attacks are independent. We denote p the probability to correctly predict a bit and α = p2 + (1 −p)2. The probability to correctly guess that amult. i = asq. i+1 and amult. i ̸= asq. References 157 Carbone, Conin, Cornélie, Dassance, Dufresne, Dumas, Prouff, Venelli References Speeding the Pollard and Elliptic Curve Methods of Fac- torization. Mathematics of Computation, 48:243–264, 1987. [MOP07] Stefan Mangard, Elisabeth Oswald, and Thomas Popp. Power Analysis Attacks – Revealing the Secrets of Smartcards. Springer, 2007. [PSB+18] Emmanuel Prouff, Remi Strullu, Ryad Benadjila, Eleonora Cagli, and Cécile Dumas. Study of deep learning techniques for side-channel analysis and introduction to ASCAD database. IACR Cryptology ePrint Archive, 2018:53, 2018. [Pum18] Max Pumperla. Keras + Hyperopt: A very simple wrapper for convenient hyperparameter optimization. https://github.com/maxpumperla/hyperas, 2018. [PZS17] Romain Poussier, Yuanyuan Zhou, and François-Xavier Standaert. A sys- tematic approach to the side-channel analysis of ECC implementations with worst-case horizontal attacks. In Wieland Fischer and Naofumi Homma, ed- itors, Cryptographic Hardware and Embedded Systems - CHES 2017 - 19th International Conference, Taipei, Taiwan, September 25-28, 2017, Proceedings, volume 10529 of Lecture Notes in Computer Science, pages 534–554. Springer, 2017. Deep Learning to Evaluate Secure RSA Implementations 156 [Sch08] Werner Schindler. Advanced Stochastic Methods in Side Channel Analysis on Block Ciphers in the Presence of Masking. Journal of Mathematical Cryptology, 2:291–310, 2008. [SLP05] Werner Schindler, Kerstin Lemke, and Christof Paar. A Stochastic Model for Differential Side Channel Cryptanalysis. In J.R. Rao and B. Sunar, editors, Cryptographic Hardware and Embedded Systems – CHES 2005, volume 3659 of Lecture Notes in Computer Science. Springer, 2005. [SW14a] Werner Schindler and Andreas Wiemers. Power attacks in the presence of exponent blinding. J. Cryptographic Engineering, 4(4):213–236, 2014. [SW14b] Werner Schindler and Andreas Wiemers. Power attacks in the presence of exponent blinding. J. Cryptographic Engineering, 4(4):213–236, 2014. [VKMJ10] B. V. K. Vijaya Kumar, Abhijit Mahalanobis, and Richard D. Juday. Correla- tion Pattern Recognition. Cambridge University Press, New York, NY, USA, 2010. [vWWB11] Jasper G. J. van Woudenberg, Marc F. Witteman, and Bram Bakker. Improv- ing differential power analysis by elastic alignment. In Aggelos Kiayias, editor, CT-RSA, volume 6558 of Lecture Notes in Computer Science, pages 104–119. Springer, 2011. [Wal01] Colin D. Walter. Sliding windows succumbs to big mac attack. In Ç.K. Koç, D. Naccache, and C. Paar, editors, Cryptographic Hardware and Embedded Systems – CHES 2001, volume 2162 of Lecture Notes in Computer Science, pages 286–299. Springer, 2001. [ZGLG14] Zhong Zeng, Dawu Gu, Junrong Liu, and Zheng Guo. An improved side- channel attack based on support vector machine. In CIS, pages 676–680. IEEE Computer Society, 2014. [Zho12] Zhi-Hua Zhou. Ensemble methods: foundations and algorithms. Chapman and Hall/CRC, 2012. A Optimal Number of Binary Collisions to Decide on the Operands’ Equality i+1 from the equality of the 34 targeted bits (event named T) is estimated by: τ(T) ≈1 2  α34 + 1 −1 234  (6) (6) The probability to correctly guess that amult. i = asq. i+1 and amult. i ̸= asq. i+1 from the equality of only c bits among the 34 targeted bits (event named S(c) c ∈[0..34]) is estimated by: τ(S(c)) ≈1 2  X c≤j≤34 34 j  αj(1 −α)34−j + 1 − P c≤j≤34 34 j  234   (7) (7) The success rates are drawn for several guessing probabilities p in Figure 16. We remark that guessing a operand bit with more than 83% success is enough to achieve at least 90% success to recover the bit exponent. Deep Learning to Evaluate Secure RSA Implementations 158 Figure 16: Evolution of the success rate τ(S(c)) (ordinate) in function of c (abscissa) for different probabilities p (colors). A zoom is drawn in the box. Figure 16: Evolution of the success rate τ(S(c)) (ordinate) in function of c (abscissa) for different probabilities p (colors). A zoom is drawn in the box. Proof. The two values that collide or not are represented by the random variables X ∈M and Y ∈M where M = {0, . . . , 2n −1}. The values of the corresponding bits are represented by the random variables Xi and Yi where i ∈B = {0, . . . , n −1}. We suppose that the distribution of the masked exponent bits is almost uniform, so the collision (bit equal to 0) has same probability than the non-collision (bit equal to 1). Proof. The two values that collide or not are represented by the random variables X ∈M and Y ∈M where M = {0, . . . , 2n −1}. The values of the corresponding bits are represented by the random variables Xi and Yi where i ∈B = {0, . . . , n −1}. We suppose that the distribution of the masked exponent bits is almost uniform, so the collision (bit equal to 0) has same probability than the non-collision (bit equal to 1). Pr [X = Y ] = Pr [X ̸= Y ] = 1 2. (8) (8) We also suppose that the realizations of X and Y are uniformly distributed between 0 and 2n −1. This is not exactly correct because they are modular values. A Optimal Number of Binary Collisions to Decide on the Operands’ Equality So ∀x ∈ M, Pr [X = x] = 1 2n and ∀y ∈M, Pr [Y = y] = 1 2n . This implies: Pr [X = x and Y = x|X = Y ] = 1 2n , (9) (9) and and Pr [X = x and Y = y|X ̸= Y ] = 1 22n −2n = 1 2n(2n −1). (10) (10) The two guessed values are represented by the random variables GX ∈M and GY ∈M. The values of the corresponding bits are represented by the random variables GXi and GY i where i ∈B. Here we only guess the bit number 12 of the 32-bit words, so we define the set of these bit indexes B12 = {j|j ∈B and j mod n 32 = 12}. 3 We denote pi(a, b) the probability to predict that the bit GXi (resp. GY i) equals to b knowing that it equals to a in reality. So ∀i ∈B and ∀(a, b) ∈{0, 1}2: pi(a, b) = Pr [GXi = b|Xi = a] = Pr [GY i = b|Yi = a] (11) (11) Carbone, Conin, Cornélie, Dassance, Dufresne, Dumas, Prouff, Venelli Carbone, Conin, Cornélie, Dassance, Dufresne, Dumas, Prouff, Venelli 159 159 The following probabilities are defined ∀i ∈B and will be used later: αi = Pr [GXi = GY i|Xi = Yi] = 1 2 X (a,b)∈{0,1}2 pi(a, b)2 (12) γi = Pr [GXi ̸= GY i|Xi = Yi] = X a∈{0,1} pi(a, 0)pi(a, 1) (13) βi = Pr [GXi = GY i] = 1 4 X (a,a′,b)∈{0,1}3 pi(a, b)pi(a′, b) (14) δi = Pr [GXi ̸= GY i] = 1 2 X (a,a′)∈{0,1}2 pi(a, 0)pi(a′, 1) (15) αi = Pr [GXi = GY i|Xi = Yi] = 1 2 X (a,b)∈{0,1}2 pi(a, b)2 (12) γi = Pr [GXi ̸= GY i|Xi = Yi] = X a∈{0,1} pi(a, 0)pi(a, 1) (13) βi = Pr [GXi = GY i] = 1 4 X (a,a′,b)∈{0,1}3 pi(a, b)pi(a′, b) (14) δi = Pr [GXi ̸= GY i] = 1 2 X (a,a′)∈{0,1}2 pi(a, 0)pi(a′, 1) (15) (12) (13) (15) First we compute the probability of predicting a collision knowing that the two values really collide. We suppose that the 68 attacks are independent, so the probability of guessing one bit GXi or GY i only depends on the true value, i.e. it does not depend on the others bits. A Optimal Number of Binary Collisions to Decide on the Operands’ Equality Pok(B′) = 1 2n X bi∈{0,1} ∀i∈B12 2n−|B12| X xi∈{0,1} ∀i∈B12 Pr [GB′((bi)i∈B12)|X = Y = x] (19) = 1 2|B12| X bi∈{0,1} ∀i∈B12 X xi∈{0,1} ∀i∈B′ X xj∈{0,1} ∀j /∈B′ Pr [∀i ∈B′, GXi = GY i = bi|X = Y = x] × Pr  ∀j /∈B′, GXj = bj, GY j = 1 −bj|X = Y = x  (20) (19) j / Pr [∀i ∈B′, GXi = GY i = bi|X = Y = x] × Pr  ∀j /∈B′, GXj = bj, GY j = 1 −bj|X = Y = x  (20) (20) We separate the terms related to bits in B′: Pok(B′) = 1 2|B12| X bi∈{0,1} ∀i∈B′ X xi∈{0,1} ∀i∈B′ Y i∈B′ Pr [GXi = bi|Xi = xi]2 × X bj∈{0,1} ∀j /∈B′ X xj∈{0,1} ∀j /∈B′ Y j /∈B′ Pr  GXj = bj|Xj = xj  × Pr  GY j = 1 −bj|Yj = xj  (21) Pok(B′) = 1 2|B12| X bi∈{0,1} ∀i∈B′ X xi∈{0,1} ∀i∈B′ Y i∈B′ Pr [GXi = bi|Xi = xi]2 × X bj∈{0,1} ∀j /∈B′ X xj∈{0,1} ∀j /∈B′ Y j /∈B′ Pr  GXj = bj|Xj = xj  P  G 1 b |Y  × Pr  GY j = 1 −bj|Yj = xj  (21) (21) Deep Learning to Evaluate Secure RSA Implementations 160 After factorization, we have: Pok(B′) = 1 2|B12| Y i∈B′ X bi∈{0,1} X xi∈{0,1} pi(xi, bi)2 × Y j /∈B′ X bj∈{0,1} X xj∈{0,1} pj(xj, bj)pj(xj, 1 −bj) (22) = 1 2|B12| Y i∈B′ 2αi · Y j /∈B′ 2γj (23) Pok(B′) = Y i∈B′ αi Y j /∈B′ γj (24) After factorization, we have: Pok(B′) = 1 2|B12| Y i∈B′ X bi∈{0,1} X xi∈{0,1} pi(xi, bi)2 × Y j /∈B′ X bj∈{0,1} X xj∈{0,1} pj(xj, bj)pj(xj, 1 −bj) (22) = 1 2|B12| Y i∈B′ 2αi · Y j /∈B′ 2γj (23) Pok(B′) = Y i∈B′ αi Y j /∈B′ γj (24) After factorization, we have: After factorization, we have: Pok(B′) = 1 2|B12| Y i∈B′ X bi∈{0,1} X xi∈{0,1} pi(xi, bi)2 × Y j /∈B′ X bj∈{0,1} X xj∈{0,1} pj(xj, bj)pj(xj, 1 −bj) (22) = 1 2|B12| Y i∈B′ 2αi · Y j /∈B′ 2γj (23) Pok(B′) = Y i∈B′ αi Y j /∈B′ γj (24) (22) (23) (24) Given a subset B′ ⊆B12 of correct guessed bits, the probability of predicting a collision knowing this is false is: Pko(B′) = Pr [GB′((bi)i∈B12)|X ̸= Y ] (25) = X bi∈{0,1} ∀i∈B12 X (x,y)∈M2 x̸=y Pr [X = x and Y = y|X ̸= Y ] × Pr [GB′((bi)i∈B12)|X = x and Y = y] (26) (25) (26) We separate the collisions: We separate the collisions: We separate the collisions: Pko(B′) = 1 2n(2n −1) X bi∈{0,1} ∀i∈B12   X (x,y)∈M2 Pr [GB′((bi)i∈B12)|X = x and Y = y] − X x∈M Pr [GB′((bi)i∈B12)|X = x and Y = x] ! A Optimal Number of Binary Collisions to Decide on the Operands’ Equality For a subset of bits B′ ⊆B12 and for a set of correct bit values (bi)∀i∈B12, we define GB′((bi)i∈B12) the fact of correctly guessing the bits of the subset and of being wrong about the others. GB′((bi)i∈B12) ⇔ ∀i ∈B′, GXi = GY i = bi and ∀j /∈B′, GXj = bj, GY j = 1 −bj (16) (16) Given a subset B′ ⊆B12 of correct guessed bits, the probability of predicting a collision knowing this is true is: Pok(B′) = Pr [GB′((bi)i∈B12)|X = Y ] (17) = X bi∈{0,1} ∀i∈B12 X x∈M Pr [X = x|X = Y ] Pr [GB′((bi)i∈B12)|X = Y = x] (18) (17) (17) (18) (17) (18) The sum on all possible values x ∈M can be rewritten as multiple sums on each bit xi ∈{0, 1} of x. A Optimal Number of Binary Collisions to Decide on the Operands’ Equality ( Pko(B′) = 1 2n(2n −1) X bi∈{0,1} ∀i∈B12   X (x,y)∈M2 Pr [GB′((bi)i∈B12)|X = x and Y = y] Pko(B′) = 1 2n(2n −1) X bi∈{0,1} ∀i∈B12   X (x,y)∈M2 Pr [GB′((bi)i∈B12)|X = x and Y = y] − X x∈M Pr [GB′((bi)i∈B12)|X = x and Y = x] ! (27) After binary rewritting, we have: Pko(B′) = 22·n−2|B12| 2n(2n −1) X (bi,xi,yi)∈{0,1}3 ∀i∈B′ Y ∀i∈B′ pi(xi, bi)pi(yi, bi) × X (bj,xj,yj)∈{0,1}3 ∀j /∈B′ Y ∀j /∈B′ pj(xj, bj)pj(yj, 1 −bj) − 2n−|B12| 2n(2n −1) X (bi,xi)∈{0,1}2 ∀i∈B′ Y ∀i∈B′ pi(xi, bi)2 × X (bj,xj)∈{0,1}2 ∀j /∈B′ Y ∀j /∈B′ pj(xj, bj)pj(xj, 1 −bj) (28) − X x∈M Pr [GB′((bi)i∈B12)|X = x and Y = x] ! (27) (27) After binary rewritting, we have: Pko(B′) = 22·n−2|B12| 2n(2n −1) X (bi,xi,yi)∈{0,1}3 ∀i∈B′ Y ∀i∈B′ pi(xi, bi)pi(yi, bi) × X (bj,xj,yj)∈{0,1}3 ∀j /∈B′ Y ∀j /∈B′ pj(xj, bj)pj(yj, 1 −bj) − 2n−|B12| 2n(2n −1) X (bi,xi)∈{0,1}2 ∀i∈B′ Y ∀i∈B′ pi(xi, bi)2 × X (bj,xj)∈{0,1}2 ∀j /∈B′ Y ∀j /∈B′ pj(xj, bj)pj(xj, 1 −bj) (28) (28) Carbone, Conin, Cornélie, Dassance, Dufresne, Dumas, Prouff, Venelli 161 After simplification with the above defined probabilities, we have: Pko(B′) = 22·n−2|B12| 2n(2n −1) Y ∀i∈B′ 4βi !  Y ∀j /∈B′ 4δj   − 2n−|B12| 2n(2n −1) Y ∀i∈B′ 2αi !  Y ∀j /∈B′ 2γj   (29) = 2n Q i∈B′ βi Q j /∈B′ δj −Q i∈B′ αi Q j /∈B′ γj 2n −1 (30) (29) = 2n Q i∈B′ βi Q j /∈B′ δj −Q i∈B′ αi Q j /∈B′ γj 2n −1 (30) (30) If the size n is such that 2n ≫1, we approximate: Pko(B′) ≈ Y i∈B′ βi Y j /∈B′ δj (31) (31) So we deduce the probabilities of prediction with all bits in case of collision or not: So we deduce the probabilities of prediction with all bits in case of collision or not: Pr [T|X = Y ] = Pok(B12) (32) Pr [T|X ̸= Y ] = Pko(B12) (33) (32) (33) (33) and the probabilities of prediction with a minimum number of identical bits in case of collision or not: Pr [S(c)|X = Y ] = X s∈Sc Pok(s) (34) Pr [S(c)|X ̸= Y ] = X s∈Sc Pko(s) (35) (34) (35) where P(B12) is the set of subsets of B12, c ∈{1 . . . A Optimal Number of Binary Collisions to Decide on the Operands’ Equality |B12|} and Sc = {s|s ∈P(B12) and |s| ≥ c} where P(B12) is the set of subsets of B12, c ∈{1 . . . |B12|} and Sc = {s|s ∈P(B12) and |s| ≥ c}. } These computations can be simplified if the probabilities pi are the same for all the bits. If for all i ∈B12, pi(0, 0) = pi(1, 1) = p then αi = α = p2 + (1 −p)2 and γi = γ = 2p(1 −p) and βi = β = δi = δ = 1 2. The above probabilities become: Pr [T|X = Y ] = α34 (36) Pr [T|X ̸= Y ] ≈ 1 234 (37) Pr [S(c)|X = Y ] = X c≤j≤34 34 j  αj(1 −α)34−j (38) Pr [S(c)|X ̸= Y ] ≈ X c≤j≤34 34 j  1 234 = P c≤j≤34 34 j  234 (39) (36) (37) (38) (39) At last, the success rates τ(T) and τ(S(c)), representing the probabilities that the predictions T and S(c) are correct, are estimated by: At last, the success rates τ(T) and τ(S(c)), representing the probabilities that the predictions T and S(c) are correct, are estimated by: τ(T) = Pr [X = Y ] Pr [T|X = Y ] + Pr [X ̸= Y ] Pr [not T|X ̸= Y ] 1  1  τ(T) = Pr [X = Y ] Pr [T|X = Y ] + Pr [X ̸= Y ] Pr [not T|X ̸= Y ] ≈1 2  α34 + 1 −1 234  (40) τ(T) = Pr [X = Y ] Pr [T|X = Y ] + Pr [X ̸= Y ] Pr [not T|X ̸= Y ] ≈1 2  α34 + 1 −1 234  (40) τ(S(c)) ≈1 2  X c≤j≤34 34 j  αj(1 −α)34−j + 1 − P c≤j≤34 34 j  234   (41) (40) τ(S(c)) ≈1 2  X c≤j≤34 34 j  αj(1 −α)34−j + 1 − P c≤j≤34 34 j  234   (41) (41)
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Pneumatosis Intestinalis in the Setting of COVID-19: A Single Center Case Series From New York
Frontiers in medicine
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Article: Miyara, S.J., Becker, L.B., Guevara, S. et al. (23 more authors) (2021) Pneumatosis intestinalis in the setting of COVID-19: a single center case series from New York. Frontiers in Medicine, 8. 638075. ISSN 2296-858X https://doi.org/10.3389/fmed.2021.638075 Reuse This article is distributed under the terms of the Creative Commons Attribution (CC BY) licence. This licence allows you to distribute, remix, tweak, and build upon the work, even commercially, as long as you credit the authors for the original work. More information and the full terms of the licence here: https://creativecommons.org/licenses/ This is a repository copy of Pneumatosis intestinalis in the setting of COVID-19: a single center case series from New York. White Rose Research Online URL for this paper: https://eprints.whiterose.ac.uk/190635/ Version: Published Version Version: Published Version Takedown If you consider content in White Rose Research Online to be in breach of UK law, please notify us by emailing eprints@whiterose.ac.uk including the URL of the record and the reason for the withdrawal request. eprints@whiterose.ac.uk https://eprints.whiterose.ac.uk/ eprints@whiterose.ac.uk https://eprints.whiterose.ac.uk/ eprints@whiterose.ac.uk https://eprints.whiterose.ac.uk/ CASE REPORT published: 04 June 2021 doi: 10.3389/fmed.2021.638075 CASE REPORT Citation: Miyara SJ, Becker LB, Guevara S, Kirsch C, Metz CN, Shoaib M, Grodstein E, Nair VV, Jandovitz N, McCann-Molmenti A, Hayashida K, Takegawa R, Shinozaki K, Yagi T, Aoki T, Nishikimi M, Choudhary RC, Cho YM, Zanos S, Zafeiropoulos S, Hoffman HB, Watt S, Lumermann CM, Aronsohn J, Shore-Lesserson L and Molmenti EP (2021) Pneumatosis Intestinalis in the Setting of COVID-19: A Single Center Case Series From New York. Front. Med. 8:638075. doi: 10.3389/fmed.2021.638075 Keywords: pneumatosis intestinalis, COVID-19, SARS-CoV-2, mesenteric ischemia, ischemia-reperfusion injury, molecular targeted therapy, tocilizumab, IL-6 inhibitor Pneumatosis Intestinalis in the Setting of COVID-19: A Single Center Case Series From New York Santiago J. Miyara 1,2†, Lance B. Becker 1,2,3,4,5†, Sara Guevara 3,4, Claudia Kirsch 6, Christine N. Metz 1,2, Muhammad Shoaib 2,4,5, Elliot Grodstein 3, Vinay V. Nair 7, Nicholas Jandovitz 3,8, Alexia McCann-Molmenti 3, Kei Hayashida 2,4, Ryosuke Takegawa 2,4, Koichiro Shinozaki 2,4, Tsukasa Yagi 2,4, Tomoaki Aoki 2,4, Mitsuaki Nishikimi 2,4, Rishabh C. Choudhary 2,4, Young Min Cho 3, Stavros Zanos 1,2, Stefanos Zafeiropoulos 1,2, Hannah B. Hoffman 3, Stacey Watt 9, Claudio M. Lumermann 5,10, Judith Aronsohn 5,10, Linda Shore-Lesserson 5,10 and Ernesto P. Molmenti 3,4,5* Edited by: 1 Elmezzi Graduate School of Molecular Medicine, Manhasset, NY, United States, 2 Feinstein Institutes for Medical Research, Manhasset, NY, United States, 3 Department of Surgery, North Shore University Hospital, Manhasset, NY, United States, 4 Department of Emergency Medicine, North Shore University Hospital, Manhasset, NY, United States, 5 Donald and Barbara Zucker School of Medicine at Hofstra/Northwell, Hempstead, NY, United States, 6 Department of Radiology, North Shore University Hospital, Manhasset, NY, United States, 7 Department of Medicine, North Shore University Hospital, Manhasset, NY, United States, 8 Department of Pharmacy, North Shore University Hospital, Manhasset, NY, United States, 9 Jacobs School of Medicine and Biomedical Sciences, University at Buffalo, Buffalo, NY, United States, 10 Department of Anesthesiology, North Shore University Hospital, Manhasset, NY, United States Edited by: Jiapeng Huang, University of Louisville, United States Reviewed by: Andre M. Japiassu, Oswaldo Cruz Foundation (Fiocruz), Brazil Tadamitsu Kishimoto, Osaka University, Japan This case series reviews four critically ill patients infected with severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) [coronavirus disease 2019 (COVID-19)] suffering from pneumatosis intestinalis (PI) during their hospital admission. All patients received the biological agent tocilizumab (TCZ), an interleukin (IL)-6 antagonist, as an experimental treatment for COVID-19 before developing PI. COVID-19 and TCZ have been independently linked to PI risk, yet the cause of this relationship is unknown and under speculation. PI is a rare condition, defined as the presence of gas in the intestinal wall, and although its pathogenesis is poorly understood, intestinal ischemia is one of its causative agents. Based on COVID-19’s association with vasculopathic and ischemic insults, and IL-6’s protective role in intestinal epithelial ischemia–reperfusion injury, an adverse synergistic association of COVID-19 and TCZ can be proposed in the setting of PI. To our knowledge, this is the first published, single center, case series of pneumatosis intestinalis in COVID-19 patients who received tocilizumab therapy. *Correspondence: Ernesto P. Molmenti emolmenti@northwell.edu *Correspondence: Ernesto P. Molmenti emolmenti@northwell.edu †These authors have contributed equally to this work †These authors have contributed equally to this work †These authors have contributed equally to this work †These authors have contributed equally to this work Specialty section: This article was submitted to Intensive Care Medicine and Anesthesiology, a section of the journal Frontiers in Medicine Received: 05 December 2020 Accepted: 08 March 2021 Received: 05 December 2020 Accepted: 08 March 2021 Published: 04 June 2021 Keywords: pneumatosis intestinalis, COVID-19, SARS-CoV-2, mesenteric ischemia, ischemia-reperfusion injury, molecular targeted therapy, tocilizumab, IL-6 inhibitor Edited by: Jiapeng Huang, University of Louisville, United States Reviewed by: Andre M. Japiassu, Oswaldo Cruz Foundation (Fiocruz), Brazil Tadamitsu Kishimoto, Osaka University, Japan *Correspondence: Ernesto P. Molmenti emolmenti@northwell.edu †These authors have contributed equally to this work INTRODUCTION Pneumatosis intestinalis (PI) is a rare condition (prevalence ∼0.03%) defined as the presence of gas in the wall of the small or large intestine (1–3). PI can represent an incidental, benign finding (primary or idiopathic PI, 15% of cases) or a potentially life-threatening gastrointestinal disease (secondary PI, 85% of cases) (4). Secondary PI is frequently associated with chronic obstructive pulmonary disease (COPD) as well as ischemic, necrotic, and obstructive gastrointestinal insults (5, 6). PI is a radiographic sign characterized by linear and/or curvilinear gas collections in the June 2021 | Volume 8 | Article 638075 Frontiers in Medicine | www.frontiersin.org Miyara et al. Pneumatosis Intestinalis in COVID-19 intestinal wall and is often indicative of systemic or local pathological processes affecting the bowel wall (7, 8). Secondary PI is frequently associated with different clinical scenarios, such as premature newborns with necrotizing enterocolitis, adults with obstructive pulmonary diseases as well as ischemic, necrotic, infectious, and obstructive gastrointestinal insults, celiac disease, amyloidosis, AIDS, rheumatic diseases, and certain drugs, particularly steroids, chemotherapeutics, glucosidase inhibitors, laxatives (lactulose), and molecular targeted agents such as tocilizumab (TCZ) (5, 7, 9–13). The clinical manifestations of PI depend on the bowel segments involved. When PI affects the small intestine, vomiting, abdominal distension, weight loss, and abdominal discomfort/pain are the most common manifestations. Less frequently, diarrhea, anorexia, and constipation can be present. When PI involves the large intestine, diarrhea, hematochezia, abdominal discomfort/pain, and distension are the most common signs and symptoms. Less frequently, constipation, weight loss, and tenesmus may occur (1, 14, 15). The pathogenesis of PI is poorly understood; however, clinical and preclinical studies suggest that PI results from a complex combination of abnormal biochemical, microbiological, and mechanical aspects of intestinal functioning (16). the first case series presenting the detailed clinical course of four COVID-19 patients who all received TCZ and developed PI. Frontiers in Medicine | www.frontiersin.org CASE PRESENTATION 1 A 65-year-old man with a past medical history (PMH) of asthma, hypertension (HTN), hyperlipidemia (HLD), insulin resistance, and obstructive sleep apnea (OSA) was admitted to the hospital due to dyspnea, tachypnea [respiratory rate (RR), 22/min], cough, fever (103◦F), and hypoxia [blood oxygen saturation levels (SpO2), 81%] after having a 2-week period of fever, chills, and body aches. Symptoms had worsened in the last 72 h before admission. On admission, the patient was placed on a non-rebreather mask (NRB) at 11 L/min (LPM) due to respiratory distress, which partially improved hypoxia from SpO2 81 to 91%. Three days after admission, the respiratory status worsened revealing diffuse bilateral ground-glass opacification on chest CT scan, along with increased counts of neutrophils in plasma, lymphopenia, and transaminitis. Labs showed increased ferritin and C-reactive protein (CRP) levels (Table 1), features compatible with the cytokine release-like syndrome associated with COVID-19 (39, 40). Based on his clinical condition with pending COVID-19 testing results, the patient was started on albuterol, meropenem, hydroxychloroquine, ascorbic acid, thiamine, TCZ, and enoxaparin prophylaxis. One day later, due to decreased oxygen saturation, the patient was placed in pronation. Upon worsening hypoxia, severe dyspnea, positive polymerase chain reaction (PCR) COVID-19 swab testing, and meeting the criteria for acute respiratory distress syndrome (ARDS), the patient was intubated. Furthermore, prophylactic enoxaparin was switched to intravenous (IV) heparin 1,500 U/h, and an IL- 1 inhibitor (anakinra) was started. Shortly, a vasoplegic shock refractory to adjustments in sedative medications prompted onset of vasopressors (norepinephrine). Since admission, the patient had no bowel movements despite the use of laxatives (lactulose), prokinetics (metoclopramide), and enemas (saline laxative). Progressive abdominal distension warranted a CT scan demonstrating extensive colon and small bowel pneumatosis with mesenteric and portal venous gas, raising suspicions of bowel ischemia (Figures 1A–D). Based on the patient’s clinical and pathological characteristics, lactate levels of 2.0 mmol/L, and no increased vasopressor requirement, surgical resection was not considered the best course of action at the time. Laxative regimen was enhanced with polyethylene glycol and senna. Monitoring of intra-abdominal pressure ranged from 13 to 19 mmHg, which suggested a likely abdominal compartment syndrome (41). Six days after initiation of mechanical ventilation, the patient developed non-oliguric acute kidney injury (AKI) likely secondary to COVID-19 sepsis and acute tubular necrosis (ATN) from hemodynamic instability. CASE PRESENTATION 1 The patient was approached in a conservative, non-surgical fashion including switching propofol to ketamine, adjusting IV fluids, using piperacillin–tazobactam for enteric bacteria, and holding potential nephrotoxic agents. A repeated CT scan 12 days after the initial scan showed changes consistent with bowel ischemia, as well as signs suggestive of peritonitis, complicated by bowel A 65-year-old man with a past medical history (PMH) of asthma, hypertension (HTN), hyperlipidemia (HLD), insulin resistance, and obstructive sleep apnea (OSA) was admitted to the hospital due to dyspnea, tachypnea [respiratory rate (RR), 22/min], cough, fever (103◦F), and hypoxia [blood oxygen saturation levels (SpO2), 81%] after having a 2-week period of fever, chills, and body aches. Symptoms had worsened in the last 72 h before admission. On admission, the patient was placed on a non-rebreather mask (NRB) at 11 L/min (LPM) due to respiratory distress, which partially improved hypoxia from SpO2 81 to 91%. Three days after admission, the respiratory status worsened revealing diffuse bilateral ground-glass opacification on chest CT scan, along with increased counts of neutrophils in plasma, lymphopenia, and transaminitis. Labs showed increased ferritin and C-reactive protein (CRP) levels (Table 1), features compatible with the cytokine release-like syndrome associated with COVID-19 (39, 40). Based on his clinical condition with pending COVID-19 testing results, the patient was started on albuterol, meropenem, hydroxychloroquine, ascorbic acid, thiamine, TCZ, and enoxaparin prophylaxis. One day later, due to decreased oxygen saturation, the patient was placed in pronation. Upon worsening hypoxia, severe dyspnea, positive polymerase chain reaction (PCR) COVID-19 swab testing, and meeting the criteria for acute respiratory distress syndrome (ARDS), the patient was intubated. Furthermore, prophylactic enoxaparin was switched to intravenous (IV) heparin 1,500 U/h, and an IL- 1 inhibitor (anakinra) was started. Shortly, a vasoplegic shock refractory to adjustments in sedative medications prompted onset of vasopressors (norepinephrine). Since admission, the patient had no bowel movements despite the use of laxatives (lactulose), prokinetics (metoclopramide), and enemas (saline laxative). Progressive abdominal distension warranted a CT scan demonstrating extensive colon and small bowel pneumatosis with mesenteric and portal venous gas, raising suspicions of bowel ischemia (Figures 1A–D). Based on the patient’s clinical and pathological characteristics, lactate levels of 2.0 mmol/L, and no increased vasopressor requirement, surgical resection was not considered the best course of action at the time. Laxative regimen was enhanced with polyethylene glycol and senna. CASE PRESENTATION 1 Neutrophilia (83%), lymphopenia (11.4%) Increased D-dimer (453 ng/mL), fibrinogen (894 mg/dL), BNP (1,164 pg/mL), CRP (45.34 mg/dL), procalcitonin (0.20 ng/mL), ferritin (1,196 ng/mL), and creatinine (2.01 mg/dL) Hyperglycemia (210 mg/dL), transaminitis (AST; 57 U/L) Hyperlactemia (5.1 mmol/L), hypokalemia (3.2 mEq/L) Oliguria (200 mL/24 h), eGFR (32 mL/min) Hypoxia (ABG∼PaO2, 51 mmHg) LDH (646 U/L) Metabolic alkalosis (pH 7.48, HCO− 3 30 mEq/L, BE 6.2 mmol/L) AZI CP Enoxaparin MP TCZ 11 days Case #3 HTN Dyspnea Cough (non-productive) Hypoxia (SpO2, 85%) Fever (100.9◦F) Fatigue Non-bloody diarrhea Abd. CT scan: diffuse small and large bowel pneumatosis (Figures 3A–D). Neutrophilia (83.9%), lymphopenia (10.5%) Respiratory alkalosis (pH 7.51, HCO− 3 24 mEq/L, pCO2 30 mmHg) Hypoxia (ABG ∼PaO2, 61 mmHg) Hypoalbuminemia (2.8 g/dL), transaminitis (AST; 161 U/L, ALT; 109 U/L). Increased D-dimer (394 ng/mL), CRP (21.15 mg/dL), LDH (639 U/L), and ferritin (7,378 ng/mL) Anakinra Enoxaparin HCQ MP TCZ 3 days Case #4 HTN, DM, Stroke AMS Upper respiratory symptoms (N/A) Abd. CT scan: presence of gas in the portal vein and mesenterium as well as extensive bowel pneumatosis (Figures 4A–D). Abd. CT scan: diffuse small and large bowel pneumatosis (Figures 3A–D). Abd. CT scan: air presence in the portal vein and superior mesenteric artery, as well as cecal and small bowel pneumatosis (Figures 2A–D). CASE PRESENTATION 1 Monitoring of intra-abdominal pressure ranged from 13 to 19 mmHg, which suggested a likely abdominal compartment syndrome (41). Six days after initiation of mechanical ventilation, the patient developed non-oliguric acute kidney injury (AKI) likely secondary to COVID-19 sepsis and acute tubular necrosis (ATN) from hemodynamic instability. The patient was approached in a conservative, non-surgical fashion including switching propofol to ketamine, adjusting IV fluids, using piperacillin–tazobactam for enteric bacteria, and holding potential nephrotoxic agents. A repeated CT scan 12 days after the initial scan showed changes consistent with bowel ischemia, as well as signs suggestive of peritonitis, complicated by bowel In December 2019, a novel coronavirus [severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)] was identified in Wuhan, China as the primary cause of a potentially fatal and multisystemic disease [coronavirus disease 2019 (COVID-19)] (17–19). Since then, three meta-analyses reported that ∼15% of COVID-19 patients had GI symptoms, most commonly diarrhea (20–22). GI manifestations in COVID-19 have been acknowledged as early signs of severe/critical disease, usually preceding respiratory symptoms (23, 24). How COVID- 19 affects the GI tract is still an open question. Nonetheless, a growing body of evidence suggests that the interaction between SARS-CoV-2 and angiotensin-converting enzyme 2 (ACE2) receptors may result in impaired gut microbiome and immunity (24–26). Furthermore, hypoxia, which putatively has a physiological role in intestinal homeostasis, can be altered as a consequence of COVID-19-induced hypoxia (24, 27). Systematic reviews and other large observational studies have discussed the association of GI complications in patients undergoing TCZ treatment; however, PI after TCZ use has been recognized by a small number of reports (9, 28, 29). Intestinal perforation is particularly an infrequent but feared complication during TCZ therapy. The exact mechanism of TCZ and GI insults is unknown, but interleukin (IL)-6 antagonism, the primary mechanism of action of TCZ, may impair intestinal homeostasis and recovery capacity after intestinal ischemia (9, 30–33). Remarkably, a history of diverticulitis, non-steroidal anti-inflammatory drugs (NSAIDs), and glucocorticoids use has also been recognized as a risk factor for GI perforation during TCZ treatment (30, 34). Only four independent case reports have described PI in COVID-19 patients (35–38). Importantly, although TCZ is being utilized as an experimental treatment for COVID-19, the two together may have adverse synergistic effects resulting in increased risk for PI and other related complications. This is June 2021 | Volume 8 | Article 638075 2 Frontiers in Medicine | www.frontiersin.org Miyara et al. Abd. CT scan: presence of gas in the portal vein and mesenterium as well as extensive bowel pneumatosis (Figures 4A D) HTN, arterial hypertension; HLD, hyperlipidemia; IR, insulin resistance; OSA, obstructive sleep apnea; DM, diabetes mellitus; CRP, C-reactive protein; HCQ, hydroxychloroquine; TCZ, Tocilizumab; AZI, azithromycin; MP, methylprednisolone; CP, convalescent plasma; AMS, altered mental status; AKI, acute kidney injury; N/A, not available; ARDS, acute respiratory distress syndrome; ABG, arterial blood gases; LDH, lactate dehydrogenase; AST, aspartate aminotransferase; ALT, alanine aminotransferase; BE, base excess; eGFR, estimated glomerular filtration rate. CASE PRESENTATION 1 TABLE 1 | Pneumatosis intestinalis in the setting of COVID-19: case series summary. Past medical history Initial clinical features Abdominal imaging Case #1 HTN, HLD, ASTHMA, IR, OSA Dyspnea Tachypnea Hypoxia (SpO2, 81%) Cough (non-productive) Fever (103◦F) Chills Body aches ARDS Abd. CT scan: extensive colon and small bowel pneumatosis with mesenteric and portal venous gas (Figures 1A–D). Case #2 HTN, HLD, DM, OSA Dyspnea Tachypnea (RR, 40/min) Hypoxia (SpO2, 76%) Cough (productive) Fever (103.9◦F) Chest pain Chills Myalgias Hyporexia ARDS Abd. CT scan: air presence in the portal vein and superior mesenteric artery, as well as cecal and small bowel pneumatosis (Figures 2A–D). Case #3 HTN Dyspnea Cough (non-productive) Hypoxia (SpO2, 85%) Fever (100.9◦F) Fatigue Non-bloody diarrhea Abd. CT scan: diffuse small and large bowel pneumatosis (Figures 3A–D). Case #4 HTN, DM, Stroke AMS Upper respiratory symptoms (N/A) Abd. CT scan: presence of gas in the portal vein and mesenterium as well as extensive bowel pneumatosis (Figures 4A–D). HTN, arterial hypertension; HLD, hyperlipidemia; IR, insulin resistance; OSA, obstructive sleep apnea CP, convalescent plasma; AMS, altered mental status; AKI, acute kidney injury; N/A, not available; ALT, alanine aminotransferase; BE, base excess; eGFR, estimated glomerular filtration rate. Medicine | www.frontiersin.org 3 June 2021 | Volume 8 | Article 6 TABLE 1 | Pneumatosis intestinalis in the setting of COVID-19: case series summary. Past medical history Initial clinical features Abdominal imaging Laboratory results during admission Experimental “COVID-19 drugs” received TCZ administration to PI manifestation (days) Case #1 HTN, HLD, ASTHMA, IR, OSA Dyspnea Tachypnea Hypoxia (SpO2, 81%) Cough (non-productive) Fever (103◦F) Chills Body aches ARDS Abd. CT scan: extensive colon and small bowel pneumatosis with mesenteric and portal venous gas (Figures 1A–D). Neutrophilia (88.8%), lymphopenia (5.2%) Hypokalemia (3.3 mmol/L), transaminitis (AST 64 U/L, ALT 47 U/L) Increased anion gap (18 mmol/L), D-dimer (2,986 ng/mL), CRP (14.17 mg/dL), LDH (545 U/L), and ferritin (1,013 ng/mL) Hypoxia (ABG ∼PaO2, 73 mmHg) Anakinra Ascorbic acid Enoxaparin HCQ TCZ Thiamine 3 days Case #2 HTN, HLD, DM, OSA Dyspnea Tachypnea (RR, 40/min) Hypoxia (SpO2, 76%) Cough (productive) Fever (103.9◦F) Chest pain Chills Myalgias Hyporexia ARDS Abd. CT scan: air presence in the portal vein and superior mesenteric artery, as well as cecal and small bowel pneumatosis (Figures 2A–D). CASE PRESENTATION 1 FIGURE 1 | (A–D) Case presentation of 65-year-old male patient with COVID-19, 5 days after tocilizumab (TCZ), non-contrast abdominal CT. (A,B) Axial, (C) coronal, and (D) 3D reconstruction, pneumatosis intestinalis (PI) involving ascending colon (yellow arrows), with dilated multiple right lower quadrant small bowel loops with mesenteric and portal venous gas (yellow arrowheads). 4 weeks prior, and 2 weeks prior to admission, he received a course of azithromycin and oseltamivir. One week prior to admission, the patient visited the ED for myalgias, chills, and cough but was discharged with a normal chest X-ray (CXR). The physical examination during the second ED visit was remarkable for severe respiratory distress and bilateral basilar crackles. His hypoxia initially improved with 6 LPM nasal cannula (NC) from SpO2 of 76–91%, albeit later requiring 6 L NRB (SpO2, 76–95%). CXR revealed bilateral infiltrates, and a CT angiogram with contrast confirmed lung parenchyma compromise with extensive bilateral ground-glass opacities in both lungs. Pulmonary embolism (PE) could not be excluded due to motion associated with the hyperdynamic state. Lab workup revealed positive COVID-19 PCR test through nasal swabbing, lymphopenia, increased D-dimer (453 ng/mL), brain-derived natriuretic peptide (BNP) (1,164 pg/mL), and procalcitonin (0.20 ng/mL) (Table 1). During the first night of admission, the patient became severely hypoxic (PaO2, 51%), with improvement in SpO2 from 80 to 88% after aggressive resuscitation with steroids (IV methylprednisolone, 100 mg), diuretics (IV perforation, pneumoperitoneum, small bowel obstruction (SBO), enterocutaneous fistulas, and abscess formation. Additionally, the patient developed hematochezia and melena, requiring aggressive resuscitation, including multiple blood and frozen plasma transfusions, as well as repeated drainage procedures to address the intra-abdominal collections. Noteworthy, a CT angiogram ruled out active bleeding at the time of melena and hematochezia. The patient slowly and progressively recovered and was finally discharged for rehabilitation, 90 days after admission. In a delayed fashion, he underwent a right colectomy. Currently, he is alive and well. CASE PRESENTATION 1 Leukocytosis (13.76 × 109/L) Increased D-dimer (3,136 ng/mL), procalcitonin (0.70 ng/mL), CRP (3.64 mg/dL), and LDH (982 U/L) Hyperlactemia (8.6 mmol/L), hyperkalemia (5.6 mEq/L) Hyperglycemia (478 mg/dL), hypertriglyceridemia (918 mg/dL) Hypoalbuminemia (3.1 g/dL) Uremia (serum creatinine, 3.85 mg/dL/BUN, 150 mg/dL) eGFR (16 mL/min), oliguria (155 mL/24 h) Mixed acidosis (pH 7 14 HCO−18 mEq/L pCO 56 mmHg) HCQ MP Remdesivir TCZ 10 days edicine | www.frontiersin.org 3 June 2021 Laboratory results during admission Experimental “COVID-19 drugs” received TCZ administration to PI manifestation (days) Neutrophilia (88.8%), lymphopenia (5.2%) Hypokalemia (3.3 mmol/L), transaminitis (AST 64 U/L, ALT 47 U/L) Increased anion gap (18 mmol/L), D-dimer (2,986 ng/mL), CRP (14.17 mg/dL), LDH (545 U/L), and ferritin (1,013 ng/mL) Hypoxia (ABG ∼PaO2, 73 mmHg) Anakinra Ascorbic acid Enoxaparin HCQ TCZ Thiamine 3 days Neutrophilia (83%), lymphopenia (11.4%) Increased D-dimer (453 ng/mL), fibrinogen (894 mg/dL), BNP (1,164 pg/mL), CRP (45.34 mg/dL), procalcitonin (0.20 ng/mL), ferritin (1,196 ng/mL), and creatinine (2.01 mg/dL) Hyperglycemia (210 mg/dL), transaminitis (AST; 57 U/L) Hyperlactemia (5.1 mmol/L), hypokalemia (3.2 mEq/L) Oliguria (200 mL/24 h), eGFR (32 mL/min) Hypoxia (ABG∼PaO2, 51 mmHg) LDH (646 U/L) Metabolic alkalosis (pH 7.48, HCO− 3 30 mEq/L, BE 6.2 mmol/L) AZI CP Enoxaparin MP TCZ 11 days Neutrophilia (83.9%), lymphopenia (10.5%) Respiratory alkalosis (pH 7.51, HCO− 3 24 mEq/L, pCO2 30 mmHg) Hypoxia (ABG ∼PaO2, 61 mmHg) Hypoalbuminemia (2.8 g/dL), transaminitis (AST; 161 U/L, ALT; 109 U/L). Increased D-dimer (394 ng/mL), CRP (21.15 mg/dL), LDH (639 U/L), and ferritin (7,378 ng/mL) Anakinra Enoxaparin HCQ MP TCZ 3 days Leukocytosis (13.76 × 109/L) Increased D-dimer (3,136 ng/mL), procalcitonin (0.70 ng/mL), CRP (3.64 mg/dL), and LDH (982 U/L) Hyperlactemia (8.6 mmol/L), hyperkalemia (5.6 mEq/L) Hyperglycemia (478 mg/dL), hypertriglyceridemia (918 mg/dL) Hypoalbuminemia (3.1 g/dL) Uremia (serum creatinine, 3.85 mg/dL/BUN, 150 mg/dL) eGFR (16 mL/min), oliguria (155 mL/24 h) Mixed acidosis (pH 7.14, HCO− 3 18 mEq/L, pCO2 56 mmHg) HCQ MP Remdesivir TCZ 10 days June 2021 | Volume 8 | Article 638075 Miyara et al. Pneumatosis Intestinalis in COVID-19 FIGURE 1 | (A–D) Case presentation of 65-year-old male patient with COVID-19, 5 days after tocilizumab (TCZ), non-contrast abdominal CT. (A,B) Axial, (C) coronal, and (D) 3D reconstruction, pneumatosis intestinalis (PI) involving ascending colon (yellow arrows), with dilated multiple right lower quadrant small bowel loops with mesenteric and portal venous gas (yellow arrowheads). Frontiers in Medicine | www.frontiersin.org CASE PRESENTATION 3 A 64-year-old man with PMH of HTN, insulin-dependent type 2 DM, and stroke 3 years prior with no residual deficits was admitted to an out-of-network hospital due to altered mental status and acute kidney injury (serum creatinine, 2.2 mg/dL). The family reported upper respiratory symptoms 1 week before admission. No acute changes were observed in the patient’s head CT scan. Due to concerns of a potential non-ST-segment elevation myocardial infarction (NSTEMI) in the setting of uncontrolled HTN, the patient was started on aspirin, clopidogrel, and a heparin drip. Based on a positive COVID-19 PCR nasal swabbing at admission and concerns for a potential bacterial pneumonia, hydroxychloroquine, remdesivir, ceftriaxone, and doxycycline were initiated. Worsening kidney function parameters (serum creatinine, 2.2–4.2 mg/dL) after antibiotic and antiviral treatment prompted suspension of these medications. One week after admission, the patient received a single dose of TCZ and was started on steroids (IV methylprednisolone, 40 mg every 8 h). By hospital day 10, despite non-invasive ventilation (BiPAP), the progressive worsening of the respiratory status required intubation and mechanical ventilation. One day later, the patient was transferred to our hospital upon family request. On initial assessment, the patient was found to be hypotensive, with oliguria (155 mL/24 h), mixed acidosis (pH 7.04, HCO− 3 17 mEq/L, pCO2 56 mmHg), hyperkalemia (5.6 mEq/L), A 64-year-old man with a PMH of HTN was admitted for 1 week history of dyspnea, cough, fever (100.9◦F), and fatigue. Pulse oximetry revealed hypoxia (SpO2, 85%), which initially improved to SpO2 of 90% with NC at 6 LPM, and later on to SpO2 of 92–94% with 10 LPM NRB. A CXR showed bilateral ground-glass opacities. On the second day of admission, the patient developed non-bloody diarrhea. With pending results from PCR COVID-19 nasal swabbing, a presumptive diagnosis of COVID-19 pneumonia was established, and the patient was started on a regimen of PO hydroxychloroquine 200 mg twice daily, IV methylprednisolone 50 mg twice daily, SC prophylactic enoxaparin 40 mg daily, anakinra (IL-1 inhibitor, SC 100 mg every 6 h), and inhaled albuterol. Lab work revealed neutrophilia, lymphopenia, respiratory alkalosis, hypoalbuminemia, transaminitis, as well as increased d-dimer, CRP, lactate dehydrogenase (LDH), and ferritin (Table 1). Despite initial improvement, 5 days after admission, he presented with a nocturnal crisis of hypoxia (SpO2, ∼60%), which improved after pronation. CASE PRESENTATION 2 A 61-year-old man with a PMH of HTN, HLD, diabetes mellitus (DM), and OSA was admitted to the hospital after presenting with dyspnea, tachypnea (RR, 40/min), hypoxia (SpO2, 76%), worsening cough (productive, non-bloody), fever (103.9◦F), chills, myalgias, hyporexia, and chest pain. Symptoms began June 2021 | Volume 8 | Article 638075 4 Pneumatosis Intestinalis in COVID-19 Miyara et al. furosemide, 40 mg), oxygen (15 LPM NRB), and pronation. On second day of admission, the patient was transferred to the ICU, received one dose of TCZ, and was started on IV methylprednisolone, 50 mg twice daily, IV furosemide, 40 mg daily, inhaled albuterol every 6 h, prophylactic enoxaparin, and non-invasive ventilation (BiLevel 18/14). On the second day of ICU admission, the patient received convalescent plasma (plasma from recovered COVID-19 patients). One week after admission, upon worsening hypoxia and hemodynamic instability, the patient underwent endotracheal intubation for mechanical ventilation and was started on a double regimen of vasopressors (vasopressin, 0.04 U/min and norepinephrine, 0.9 mcg/kg/min). The patient suffered two episodes of arterial thrombosis despite proper anticoagulation with argatroban. Five days after initiating mechanical ventilation, physical examination revealed a protuberant abdomen and dark output from the nasogastric tube (NGT). Further workup showed increased lactate and leukocytosis, hyperkalemia (5.8 mEq/L), increased creatinine (2.01 mg/dL), and oliguria. Abdominal CT scan reported gas in the portal vein and superior mesenteric artery, as well as cecal and small bowel pneumatosis (Figures 2A–D). The benefit of a surgical intervention was considered very low in the setting of an unstable patient with multiorgan failure; hence, it was approached conservatively, including antibiotics (metronidazole and vancomycin), proton-pump inhibitors (pantoprazole), renal replacement therapy [continuous veno-venous hemofiltration (CVVH)], fluid optimization, and metabolic support. On the 10th day of ICU admission, the patient developed refractory cardiopulmonary arrest associated with metabolic acidosis and lactate levels of 24 mmol/L. sedation, endotracheal intubation, and mechanical ventilation. At this point, the patient was transferred to another ICU and, upon arrival, was found to have an unsecure airway, raising concern for potential aspiration. Based on this, the patient was started on a regimen of IV piperacillin–tazobactam and one dose of vancomycin. Nine days after initial hospital admission, the patient developed septic shock and prerenal acute kidney injury, which prompted hemodynamic support with a norepinephrine drip (0.02 mcg/kg/min). Enoxaparin was switched to IV sodium heparin due to a D-dimer of 987 ng/mL. CASE PRESENTATION 2 Additionally, the patient received a single dose of TCZ. Three days after TCZ administration, routine physical examination showed abdominal distension and tympanism with digital percussion. An abdominal X-ray revealed features compatible with colonic ileus or pseudo- obstruction. Subsequent CT scan showed diffuse small and large bowel pneumatosis (Figures 3A–D). This was found in the setting of worsening kidney and liver function, increased ventilation requirements, acidosis (pH 7.17), and leukocytosis (35,000 WBC/mL). Due to broad multiorgan failure, the patient was not deemed a good surgical candidate for segmental resection. CXR showed additional bilateral consolidations in the lower lobes, along with worsening respiratory status, suggesting a superimposed pneumonia. At this point, with the diagnosis of septic shock and multiorgan failure, and considering the ominous prognosis, the family decided to prioritize comfort over other aggressive measures. The patient was withdrawn from mechanical ventilation and developed a cardiopulmonary arrest 4 min thereafter. Frontiers in Medicine | www.frontiersin.org CASE PRESENTATION 3 Four hours later, the patient (without any relevant psychiatric/neurological history) developed intermittent episodes of delirium, agitation, and altered mental status, which was treated with haloperidol. Subsequently, due to worsening hypoxia, the patient underwent June 2021 | Volume 8 | Article 638075 5 Miyara et al. Pneumatosis Intestinalis in COVID-19 FIGURE 2 | (A–D) Case presentation of a 61-year-old male COVID-19 patient with respiratory failure on TCZ with rising lactate, abdominal ileus, abdominal CT with intravenous and oral contrast, (A) axial, (B) coronal, (C) sagittal, and (D) 3D reconstruction, with ileus and small and large bowel dilatation, with small bowel and cecal pneumatosis (yellow arrows) with portal gas (yellow arrowheads), and splenic and mesenteric vein gas. FIGURE 2 | (A–D) Case presentation of a 61-year-old male COVID-19 patient with respiratory failure on TCZ with rising lactate, abdominal ileus, abdominal CT with intravenous and oral contrast, (A) axial, (B) coronal, (C) sagittal, and (D) 3D reconstruction, with ileus and small and large bowel dilatation, with small bowel and cecal pneumatosis (yellow arrows) with portal gas (yellow arrowheads), and splenic and mesenteric vein gas. hyperglycemia (478 mg/dL), hypertriglyceridemia (918 mg/dL), hypoalbuminemia (3.1 g/dL), and uremia [serum creatinine 3.85 mg/dL, blood urea nitrogen (BUN) 150 mg/dL], which prompted continuous renal replacement therapy (Table 1). Intensive resuscitation with albumin, bicarbonate, insulin, norepinephrine, and vancomycin was initiated. Propofol was discontinued and switched to dexmedetomidine. The patient also received IV pantoprazole 40 mg, polyethylene glycol, lactulose, senna, and methylnaltrexone. Subsequently, the patient developed fever (101.4◦F), leukocytosis (33.16 × 109/L), and low platelets (85 × 109/L). Due to concerns of potential heparin- induced thrombocytopenia, heparin was suspended and replaced with argatroban. Despite intensive supportive care, vasopressor requirements increased prompting the addition of vasopressin at 0.04 U/min. Leukocytes count and lactate further increased (33.16 × 109/L to 40 × 109/L; 2.7–8.6 mmol/L, respectively). One week after the hospital transfer, abdominal distension on physical exam prompted a CT scan that revealed gas in the portal vein and mesentery as well as extensive intestinal pneumatosis (Figures 4A–D). Surgical assessment dismissed a potential bowel resection since the risks were considered greater than any potential benefit. The patient developed refractory septic shock and, 1 day later, a cardiopulmonary arrest. DISCUSSION Pneumatosis intestinalis is thought to result from a complex combination of biochemical, microbiological, and mechanical insults to the intestine (16). The biochemical hypothesis argues that PI originates from excessive hydrogen production by enteric bacteria through chyme fermentation. Support of this hypothesis includes observational studies demonstrating that patients with PI have elevated levels of hydrogen in their breath compared with control patients (42, 43). The microbiological or bacterial hypothesis suggests that gas forming bacteria, such as Clostridium species, infringe upon the mucosa through breaches, reaching the submucosa and subsequently forming intramural gas collections (44). Experimental models supporting this hypothesis include the improvement and resolution of the aforementioned intramural June 2021 | Volume 8 | Article 638075 Frontiers in Medicine | www.frontiersin.org 6 Miyara et al. Pneumatosis Intestinalis in COVID-19 FIGURE 3 | (A–D) Case presentation of a 63-year-old male patient, with dyspnea, cough, fever from COVID-19, with bloody diarrhea, and abdominal distention 3 days after receiving TCZ, abdominal CT with oral contrast only, (A) axial, (B) coronal, (C) sagittal, and (D) 3D reconstruction with consolidation seen along lung bases, and pneumatosis of small bowel loops (yellow arrows) with dilated small and large bowel loops consistent with ileus. FIGURE 3 | (A–D) Case presentation of a 63-year-old male patient, with dyspnea, cough, fever from COVID-19, with bloody diarrhea, and abdominal distention 3 days after receiving TCZ, abdominal CT with oral contrast only, (A) axial, (B) coronal, (C) sagittal, and (D) 3D reconstruction with consolidation seen along lung bases, and pneumatosis of small bowel loops (yellow arrows) with dilated small and large bowel loops consistent with ileus. to elemental diet for mild symptoms, to antibiotics, oxygen therapy, and hospitalization for severe cases. Notably, clinical judgement is an instrumental component of the decision-making process (7, 45, 52–54). gas collections by antibiotic treatment (45). An alternative mechanical hypothesis states that gas can reach the submucosal compartment of the intestinal wall either through breaks in the mucosa (intraluminal source) or the serosal surface (extraluminal source). Indeed, common conditions associated with mucosal disruption are consistently related with PI, such as necrotizing enterocolitis, inflammatory bowel disease, gastrointestinal (GI) tract infections, irritant ingestion, and intestinal ischemia (1). Gas originating extraluminally can be traced to conditions where air can diffuse through tissues, as occurs in COPD (46). Frontiers in Medicine | www.frontiersin.org DISCUSSION There are foci of air in mesenteric vessels in the right lower quadrant, with portal venous gas (yellow arrowheads). FIGURE 4 | (A–D) Case presentation of a 64-year-old male patient, with altered mental status, acute kidney injury, DM2, stroke, bacterial pneumonia with COVID-19, single-dose TCZ, hypotensive, oliguric, non-contrast abdominal CT only, (A) axial, (B) coronal, (C) sagittal, and (D) 3D reconstruction with pneumatosis of distal transverse colon, cecum, terminal ileum, and mesenteric venous gas adjacent to the terminal ileum (yellow arrows) concerning for bowel ischemia. There are foci of air in mesenteric vessels in the right lower quadrant, with portal venous gas (yellow arrowheads). endothelial cells, resulting in endothelialitis, endothelial dysfunction, and thrombosis (69–72); (2) capillary viscometry showed hyperviscosity in critically ill COVID-19 patients (73); (3) platelet activation and platelet–monocyte aggregation formation in severe COVID-19 patients was documented (74); and (4) thromboelastography (TEG) parameters (decreased R and K values, increased K angle, and MA) consistent with a hypercoagulability state have been found in COVID-19 patients (75). sarilumab, siltuximab (all anti-IL-6), and anakinra (anti-IL- 1), have been conducted worldwide1. TCZ is an evidence- based treatment for rheumatoid arthritis; however, there are no clear benefits in the setting of COVID-19. At the time of writing, double-blind, randomized, clinical trials have failed to prove any benefit from these drugs in COVID-19 (65, 66). An observational study that included a cohort of 1,351 COVID-19 patients showed that patients receiving TCZ had a decreased risk of invasive mechanical ventilation and death compared to matched controls (67). Another study suggested that TCZ was associated with decreased vasopressor requirements (68). Although PI and gastrointestinal perforation have been recognized as potential adverse effects of TCZ, the mechanisms are completely unknown (9, 30). endothelial cells, resulting in endothelialitis, endothelial dysfunction, and thrombosis (69–72); (2) capillary viscometry showed hyperviscosity in critically ill COVID-19 patients (73); (3) platelet activation and platelet–monocyte aggregation formation in severe COVID-19 patients was documented (74); and (4) thromboelastography (TEG) parameters (decreased R and K values, increased K angle, and MA) consistent with a hypercoagulability state have been found in COVID-19 patients (75). In short, this case series portrays four critically ill patients who, in the setting of ARDS due to severe COVID-19, received TCZ as an experimental treatment, and all developed complex clinical courses of PI, which subsequently resulted in perforation, sepsis, hemodynamic instability, multiorgan failure, and death in three out of four patients. 1Available online at: https://clinicaltrials.gov/ct2/results?cond=&term= tocilizumab$+$covid-19&cntry=&state=&city=&dist=. DISCUSSION Since March 11th of 2020, when the global COVID-19 pandemic was formally declared, a growing body of evidence has shown the systemic and extrapulmonary compromise that can potentially occur in the setting of COVID-19 (55). The involvement of neurological, cardiovascular, gastrointestinal, hematopoietic, endocrine, and immune systems have been described in many studies (56–59). Additionally, the ischemic damage seen during COVID-19 infection has also been described in several systematic reviews (60–63). Indeed, observational studies have shown the association of COVID-19 with abdominal ischemia; nonetheless, its pathophysiology remains unknown (64). Research has shown a clear association between high levels of proinflammatory cytokines and inflammatory markers with severe, critical, and fatal forms of COVID-19 (40). Under the logic of specifically targeting the COVID-19-associated “cytokine storm”, trials with specific cytokine inhibitors, such as TCZ, g It should be acknowledged that PI is not a disease itself, but rather the imaging manifestation of an underlying pathology or combination of pathologies. As such, the underlying etiology (e.g., ischemia, drugs, infections) must always be addressed accordingly prior to specific treatments (47–49). When PI is accompanied with signs of peritonitis, pH <7.3, HCO− 3 <20 mEq/L, lactate >2.0 mmol/L, and/or portal venous gas, emergent exploratory laparotomy should be considered (50, 51). Treatment is usually based on the severity of symptoms and can range from repeated imaging in asymptomatic patients June 2021 | Volume 8 | Article 638075 7 Miyara et al. Pneumatosis Intestinalis in COVID-19 FIGURE 4 | (A–D) Case presentation of a 64-year-old male patient, with altered mental status, acute kidney injury, DM2, stroke, bacterial pneumonia with COVID-19, single-dose TCZ, hypotensive, oliguric, non-contrast abdominal CT only, (A) axial, (B) coronal, (C) sagittal, and (D) 3D reconstruction with pneumatosis of distal transverse colon, cecum, terminal ileum, and mesenteric venous gas adjacent to the terminal ileum (yellow arrows) concerning for bowel ischemia. There are foci of air in mesenteric vessels in the right lower quadrant, with portal venous gas (yellow arrowheads). FIGURE 4 | (A–D) Case presentation of a 64-year-old male patient, with altered mental status, acute kidney injury, DM2, stroke, bacterial pneumonia with COVID-19, single-dose TCZ, hypotensive, oliguric, non-contrast abdominal CT only, (A) axial, (B) coronal, (C) sagittal, and (D) 3D reconstruction with pneumatosis of distal transverse colon, cecum, terminal ileum, and mesenteric venous gas adjacent to the terminal ileum (yellow arrows) concerning for bowel ischemia. REFERENCES 7. Heng Y, Schuffler MD, Haggitt RC, Rohrmann CA. Pneumatosis intestinalis: a review. Am J Gastroenterol. (1995) 90:1747–58. 1. Pear BL. Pneumatosis intestinalis: a review. Radiology. (1998) 207:13– 9. doi: 10.1148/radiology.207.1.9530294 1. Pear BL. Pneumatosis intestinalis: a review. Radiology. (1998) 207:13– 9. doi: 10.1148/radiology.207.1.9530294 8. Khalil PN, Huber-Wagner S, Ladurner R, Kleespies A, Siebeck M, Mutschler W, et al. Natural history, clinical pattern, and surgical considerations of pneumatosis intestinalis. Euro J Med Res. (2009) 14:231– 9. doi: 10.1186/2047-783X-14-6-231 2. Boerner RM, Fried DB, Warshauer DM, Isaacs K. Pneumatosis intestinalis. Digest Dis Sci. (1996) 41:2272–85. doi: 10.1007/BF02071412 3. Kang G. Benign pneumatosis intestinalis: dilemma for primary care clinicians. Can Fam Phys. (2017) 63:766–8. 9. Jacobs B, Jawad A, Fattah Z. Pneumatosis intestinalis and intestinal perforation in a patient receiving tocilizumab. Arch Rheumatol. (2018) 33:372. doi: 10.5606/ArchRheumatol.2018.6668 9. Jacobs B, Jawad A, Fattah Z. Pneumatosis intestinalis and intestinal perforation in a patient receiving tocilizumab. Arch Rheumatol. (2018) 33:372. doi: 10.5606/ArchRheumatol.2018.6668 4. Saul T, Palamidessi N. Pneumatosis intestinalis. J Emerg Med. (2011) 40:545– 6. doi: 10.1016/j.jemermed.2008.10.019 10. Dawe N, Akhtar S. Pneumatosis intestinalis presenting with a pneumoperitoneum in a patient with chronic bronchiectasis: a delayed diagnosis of superior mesenteric artery ischaemia. BMJ Case Rep. (2010) 2010:bcr0120102622. doi: 10.1136/bcr.01.2010.2622 10. Dawe N, Akhtar S. Pneumatosis intestinalis presenting with a pneumoperitoneum in a patient with chronic bronchiectasis: a delayed diagnosis of superior mesenteric artery ischaemia. BMJ Case Rep. (2010) 2010:bcr0120102622. doi: 10.1136/bcr.01.2010.2622 5. Doumit M, Saloojee N, Seppala R. Pneumatosis intestinalis in a patient with chronic bronchiectasis. Can J Gastroenterol. (2008) 22:595297. doi: 10.1155/2008/595297 11. Dhadlie S, Mehanna D, McCourtney J. Pneumatosis intestinalis a trap for the unwary: case series and literature review. Int J Surg Case Rep. (2018) 53:214–7. doi: 10.1016/j.ijscr.2018.10.079 11. Dhadlie S, Mehanna D, McCourtney J. Pneumatosis intestinalis a trap for the unwary: case series and literature review. Int J Surg Case Rep. (2018) 53:214–7. doi: 10.1016/j.ijscr.2018.10.079 6. Iida A, Naito H, Tsukahara K, Yumoto T, Nosaka N, Kawana S, et al. Pneumatosis cystoides intestinalis presenting as pneumoperitoneum in a patient with chronic obstructive pulmonary disease: a case report. J Med Case Rep. (2017) 11:1–3. doi: 10.1186/s13256-017- 1198-2 12. Ezuka A, Kawana K, Nagase H, Takahashi H, Nakajima A. Improvement of pneumatosis cystoides intestinalis after steroid tapering in a 12. Ezuka A, Kawana K, Nagase H, Takahashi H, Nakajima A. DISCUSSION Herein, we highlight a potential correlation between an infectious disease (COVID-19), an experimental drug in this setting (TCZ), and a rare GI complication (PI). COVID-19 and TCZ have been independently associated with PI (9, 36–38). Intestinal Several hypotheses argue in favor of a prothrombotic, microangiopathic, and therefore ischemic effect of COVID-19: (1) SARS-CoV-2 virus can directly invade June 2021 | Volume 8 | Article 638075 Frontiers in Medicine | www.frontiersin.org 8 Pneumatosis Intestinalis in COVID-19 Miyara et al. ischemia is a well-established cause of PI; however, the causative mechanism of PI during TCZ treatment is unknown. Preclinical studies suggested that IL-6 plays a critical role in intestinal epithelial proliferation and repair after ischemia– reperfusion, traumatic, and microbiological insults (30, 76). Clinical studies have shown IL-6’s pivotal role in vascular endothelial growth factor production, as well as angiogenesis and wound healing (31–33). resulting in an uncertain number of potential confounders. Additionally, two patients (Cases 3 and 4) received initial care at an outside hospital, and although the hospital course summary was accessible, the variability of clinical setting may hide unknown confounders. Therefore, it is complex and not possible for the authors to establish any definite cause–effect connection between the described variables (COVID-19 and TCZ) with the highlighted clinical outcome (PI). Further preclinical and clinical research addressing interactions between COVID-19 and TCZ with PI is warranted. Taken together, we venture to think that a possible negative and devastating synergy occurs between the microvascular insults from COVID-19, along with the lack of epithelial protection and vascular support from IL-6 blocking, ultimately resulting in intestinal wall damage, epithelium dysfunction, and intraluminal gas diffusion (Pneumatosis Intestinalis). However, it must be acknowledged that COVID-19 may affect intestinal homeostasis by other complex mechanisms involving gut microbiome and barrier functioning (24). To the best of our knowledge, this is the first case series of PI in COVID-19 patients, as well as the first reported from the same institution, and the first report of COVID-19 patients treated with TCZ who subsequently developed PI. DATA AVAILABILITY STATEMENT The original contributions presented in the study are included in the article/supplementary material, further inquiries can be directed to the corresponding author. LIMITATIONS SM, LB, SG, CK, KH, and EM prepared the manuscript’s first draft. SM, LB, and EM retrieved and corroborated the data. CK prepared the figures and edited the manuscript. LS-L, JA, TA, KS, EG, VN, NJ, CM, TY, RT, YC, MS, RC, SW, HH, MN, and SZaf collaborated in the discussion. AM-M, SZan, and CL collaborated in the review. All authors contributed to manuscript revision, read, and approved the submitted version. SM, LB, SG, CK, KH, and EM prepared the manuscript’s first draft. SM, LB, and EM retrieved and corroborated the data. CK prepared the figures and edited the manuscript. LS-L, JA, TA, KS, EG, VN, NJ, CM, TY, RT, YC, MS, RC, SW, HH, MN, and SZaf collaborated in the discussion. Discussions regarding the causal relationship between COVID- 19 and TCZ with PI are beyond the scope of this publication. However, it is important to acknowledge that some medications that patients received (methylprednisolone and lactulose) may be linked to PI development (1, 13, 79–81). Furthermore, these four critically-ill patients received intensive care support, which inherently adds numerous variables, including known and unknown interactions between each other and the host, AM-M, SZan, and CL collaborated in the review. All authors contributed to manuscript revision, read, and approved the submitted version. ETHICS STATEMENT The studies involving human participants were reviewed and approved by Study approved by IRB #: 20-0884, Feinstein Institutes for Medical Research. Written informed consent for participation was not required for this study in accordance with the national legislation and the institutional requirements. Written informed consent was not obtained from the individual(s) for the publication of any potentially identifiable images or data included in this article. At the time of writing, COVID-19 is a novel entity with poorly understood pathology. Experimental, emergency, and compassionate use of drugs in COVID-19 has been the object of recent discussions. It should always be cautioned that deleterious interactions between drug-related adverse effects and intrinsic features of an infectious disease, in this case COVID-19, can lead to further complications (77, 78) “Primum non nocere”. REFERENCES Improvement of pneumatosis cystoides intestinalis after steroid tapering in a June 2021 | Volume 8 | Article 638075 Frontiers in Medicine | www.frontiersin.org 9 Miyara et al. Pneumatosis Intestinalis in COVID-19 patient with bronchial asthma: a case report. J Med Case Rep. (2013) 7:163. doi: 10.1186/1752-1947-7-163 31. Nakahara H, Song J, Sugimoto M, Hagihara K, Kishimoto T, Yoshizaki K, et al. Anti–interleukin-6 receptor antibody therapy reduces vascular endothelial growth factor production in rheumatoid arthritis. Arthritis Rheumatism. (2003) 48:1521–9. doi: 10.1002/art.11143 13. Goodman RA, Riley TR 3rd. Lactulose-induced pneumatosis intestinalis and pneumoperitoneum. Dig Dis Sci. (2001) 46:2549–53. doi: 10.1023/a:1012308911096 32. Verheul HM, Pinedo HM. Possible molecular mechanisms involved in the toxicity of angiogenesis inhibition. Nat Rev Cancer. (2007) 7:475– 85. doi: 10.1038/nrc2152 14. Wu LL, Yang YS, Dou Y, Liu QS. A systematic analysis of pneumatosis cystoids intestinalis. World J Gastroenterol. (2013) 19:4973. doi: 10.3748/wjg.v19.i30.4973 33. Pawar A, Desai RJ, Solomon DH, Ortiz AJ, Gale S, Bao M, et al. Risk of serious infections in tocilizumab versus other biologic drugs in patients with rheumatoid arthritis: a multidatabase cohort study. Ann Rheumatic Dis. (2019) 78:456–64. doi: 10.1136/annrheumdis-2018-214367 15. Jamart J. Pneumatosis cystoides intestinalis. A statistical study of 919 cases. Acta Hepato Gastroenterol. (1979) 26:419–22. 16. Blair HA, Baker R, Albazaz R. Pneumatosis intestinalis an increasingly common radiological finding, benign or life-threatening? A case series. Case Rep. (2015) 2015:bcr2014207234. doi: 10.1136/bcr-2014-207234 34. Malaviya AP, Ledingham J, Bloxham J, Bosworth A, Buch M, Choy E, et al. The 2013 BSR and BHPR guideline for the use of intravenous tocilizumab in the treatment of adult patients with rheumatoid arthritis. Rheumatology. (2014) 53:1344–6. doi: 10.1093/rheumatology/keu168 17. World Health Organization. WHO Director-General’s Remarks at the Media Briefing on 2019-nCoV on 11 February 2020. Geneva: World Health Organization. Available online at: https://www.who.int/dg/speeches/detail/ who-director-general-s-remarks-at-the-media-briefing-on-2019-ncov-on- 11-february-2020 (accessed April 10, 2020). 35. Aiello P, Johnson S, Mercado AR, Hussein S. Pneumatosis intestinalis in a patient with COVID-19. BMJ Case Reports CP. (2020) 13:e237564. doi: 10.1136/bcr-2020-237564 18. Temgoua MN, Endomba FT, Nkeck JR, Kenfack GU, Tochie JN, Essouma M. Coronavirus disease 2019 (COVID-19) as a multi-systemic disease and its impact in low- and middle-income countries (LMICs). SN Compr Clin Med. (2020). doi: 10.1007/s42399-020-00417-7. [Epub ahead of print]. 36. Meini S, Zini C, Passaleva MT, Frullini A, Fusco F, Carpi R, et al. Pneumatosis intestinalis in COVID-19. BMJ Open Gastroenterol. (2020) 7:e000434. doi: 10.1136/bmjgast-2020-000434 37. Lakshmanan S, Toubia N. Pneumatosis intestinalis in COVID-19. REFERENCES Clin Gastroenterol Hepatol. (2020) 7:e000434. doi: 10.1016/j.cgh.2020.05.048 19. World Health Organization. Pneumonia of Unknown Cause—China. Available online at: https://www.who.int/csr/don/05-january-2020-17pneumonia-of- unknown-cause-china/en/ (accessed January 5, 2020). 38. Kielty J, Duggan WP, O’Dwyer M. Extensive pneumatosis intestinalis and portal venous gas mimicking mesenteric ischaemia in a patient with SARS-CoV-2. Ann R Coll Surg Engl. (2020) 102:e145–7. doi: 10.1308/rcsann.2020.0145 20. Cheung KS, Hung IF, Chan PP, Lung KC, Tso E, Liu R, et al. Gastrointestinal manifestations of SARS-CoV-2 infection and virus load in fecal samples from the Hong Kong cohort and systematic review and meta-analysis. Gastroenterology. (2020) 159:81–95. doi: 10.1053/j.gastro.2020. 03.065 39. Moore JB, June CH. Cytokine release syndrome in severe COVID-19. Science. (2020) 368:473–4. doi: 10.1126/science.abb8925 40. Mehta P, McAuley DF, Brown M, Sanchez E, Tattersall RS, Manson JJ, et al. COVID-19: consider cytokine storm syndromes and immunosuppression. Lancet. (2020) 395:1033. doi: 10.1016/S0140-6736(20)30628-0 21. Sultan S, Altayar O, Siddique SM, Davitkov P, Feuerstein JD, Lim JK, et al. AGA Institute rapid review of the gastrointestinal and liver manifestations of COVID-19, meta-analysis of international data, and recommendations for the consultative management of patients with COVID-19. Gastroenterology. (2020) 159:320–34. doi: 10.1053/j.gastro.2020.05.001 41. De Laet IE, Malbrain ML, De Waele JJ. A clinician’s guide to management of intra-abdominal hypertension and abdominal compartment syndrome in critically ill patients. Crit Care. (2020) 24:1–9. doi: 10.1186/s13054-020-2782-1 42. Read NW, Al-Janabi MN, Cann PA. Is raised breath hydrogen related to the pathogenesis of pneumatosis coli?. Gut. (1984) 25:839–45. doi: 10.1136/gut.25.8.839 22. Mao R, Qiu Y, He JS, Tan JY, Li XH, Liang J, et al. Manifestations and prognosis of gastrointestinal and liver involvement in patients with COVID- 19: a systematic review and meta-analysis. Lancet Gastroenterol Hepatol. (2020) 5:667–78. doi: 10.1016/S2468-1253(20)30126-6 43. Christl SU, Gibson GR, Murgatroyd PR, Scheppach W, Cummings JH. Impaired hydrogen metabolism in pneumatosis cystoides intestinalis. Gastroenterology. (1993) 104:392–7. doi: 10.1016/0016-5085(93)90406-3 23. Jin X, Lian JS, Hu JH, Gao J, Zheng L, Zhang YM, et al. Epidemiological, clinical and virological characteristics of 74 cases of coronavirus- infected disease 2019 (COVID-19) with gastrointestinal symptoms. Gut. (2020) 69:1002–9. doi: 10.1136/gutjnl-2020-320926 44. Yale CE, Balish E, Wu JP. The bacterial etiology of pneumatosis cystoides intestinalis. Arch Surg. (1974) 109:89– 94. doi: 10.1001/archsurg.1974.01360010067017 24. Trottein F, Sokol H. Potential causes and consequences of gastrointestinal disorders during a SARS-CoV-2 infection. Cell Rep. (2020) 32:107915. doi: 10.1016/j.celrep.2020.107915 g 45. Ellis BW. Symptomatic treatment of primary pneumatosis coli with metronidazole. Br Med J. (1980) 280:763. REFERENCES (2020) 18:1738–42. doi: 10.1111/jth.14850 59. Bangash MN, Patel J, Parekh D. COVID-19 and the liver: little cause for concern. Lancet Gastroenterol Hepatol. (2020) 5:529. doi: 10.1016/S2468-1253(20)30084-4 76. Jin X, Zimmers TA, Zhang Z, Pierce RH, Koniaris LG. Interleukin-6 is an important in vivo inhibitor of intestinal epithelial cell death in mice. Gut. (2010) 59:186–96. doi: 10.1136/gut.2008.151175 60. Tan YK, Goh C, Leow AS, Tambyah PA, Ang A, Yap ES, et al. COVID-19 and ischemic stroke: a systematic review and meta-summary of the literature. J Thromb Thromb. (2020) 50:587–95. doi: 10.1007/s11239-020-02228-y 77. Jiang S. Don’t rush to deploy COVID-19 vaccines and drugs without sufficient safety guarantees. Nature. (2020) 579:321. doi: 10.1038/d41586-020-00751-9 61. Merkler AE, Parikh NS, Mir S, Gupta A, Kamel H, Lin E, et al. Risk of ischemic stroke in patients with coronavirus disease 2019 (COVID-19) vs patients with influenza. JAMA Neurol. (2020) 77:1–7. doi: 10.1001/jamaneurol.2020.2730 78. Grein J, Ohmagari N, Shin D, Diaz G, Asperges E, Castagna A, et al. Compassionate use of remdesivir for patients with severe Covid-19. N Engl J Med. (2020) 382:2327–36. doi: 10.1056/NEJMoa2007016 62. Mao L, Jin H, Wang M, Hu Y, Chen S, He Q, et al. Neurologic manifestations of hospitalized patients with coronavirus disease 2019 in Wuhan, China. JAMA Neurol. (2020) 77:683–90. doi: 10.1001/jamaneurol.2020.1127 79. Ohara H, Kato Y, Nakano M, Ishii Y, Serizawa H, Watanabe N, et al. A case of pneumatosis cystoides intestinalis induced by steroid pulse therapy for severe acute hepatitis B. Nihon Shokakibyo Gakkai Zasshi. (2011) 108:1237. doi: 10.11405/nisshoshi.108.1237 63. Helms J, Kremer S, Merdji H, Clere-Jehl R, Schenck M, Kummerlen C, et al. Neurologic features in severe SARS-CoV-2 infection. N Engl J Med. (2020) 382:2268–70. doi: 10.1056/NEJMc2008597 80. Varelas LJ, Klinge MJ, Malik SM, Borhani AA, Neal M. Idiopathic Pneumatosis intestinalis secondary to lactulose use in patients with cirrhosis. J Gastroenterol Hepatol. (2020) 35:1065–8. doi: 10.1111/jgh.14920 64. Bhayana R, Som A, Li MD, Carey DE, Anderson MA, Blake MA, et al. Abdominal imaging findings in COVID-19: preliminary observations. Radiology. (2020) 297:E207–15. doi: 10.1148/radiol.2020201908 81. Lee CI, Wu YH. Pneumatosis intestinalis and pneumoretroperitoneum post steroid use in a patient with superior mesenteric artery syndrome. Am J Emerg Med. (2019) 37:1993-e1–3. doi: 10.1016/j.ajem.2019. 06.040 65. Strand V, Burmester GR, Ogale S, Devenport J, John A, Emery P. REFERENCES Holt S, Gilmour HM, Buist TA, Marwick K, Heading RC. High flow oxygen therapy for pneumatosis coli. Gut. (1979) 20:493–8. doi: 10.1136/gut.20.6.493 69. Ackermann M, Verleden SE, Kuehnel M, Haverich A, Welte T, Laenger F, et al. Pulmonary vascular endothelialitis, thrombosis, and angiogenesis in Covid-19. N Engl J Med. (2020) 382:120–8. doi: 10.1056/NEJMoa20 15432 53. Grieve DA, Unsworth IP. Pneumatosis cystoides intestinalis: an experience with hyperbaric oxygen treatment. Aust N Zeal J Surg. (1991) 61:423– 6. doi: 10.1111/j.1445-2197.1991.tb00255.x 70. Teuwen LA, Geldhof V, Pasut A, Carmeliet P. COVID-19: the vasculature unleashed. Nat Rev Immunol. (2020) 20:1–3. doi: 10.1038/s41577-020-0356-8 54. Zhang H, Jun SL, Brennan TV. Pneumatosis intestinalis: not always a surgical indication. Case Rep Surg. (2012) 2012:719713. doi: 10.1155/2012/719713 71. Libby P, Lüscher T. COVID-19 is, in the end, an endothelial disease. Euro Heart J. (2020) 41:3038–44. doi: 10.1093/eurheartj/ehaa623 55. Ng OT, Marimuthu K, Chia PY, Koh V, Chiew CJ, De Wang L, et al. SARS- CoV-2 infection among travelers returning from Wuhan, China. N Engl J Med. (2020) 382:1476–8. doi: 10.1056/NEJMc2003100 72. Varga Z, Flammer AJ, Steiger P, Haberecker M, Andermatt R, Zinkernagel AS, et al. Endothelial cell infection and endotheliitis in COVID-19. Lancet. (2020) 395:1417–8. doi: 10.1016/S0140-6736(20)30 937-5 56. Duarte-Neto AN, Monteiro RAA, da Silva LFF, Malheiros DMAC, de Oliveira EP, Theodoro-Filho J, et al. Pulmonary and systemic involvement in COVID- 19 patients assessed with ultrasound-guided minimally invasive autopsy. Histopathology. (2020) 77:186–97. doi: 10.1111/his.14160 73. Maier CL, Truong AD, Auld SC, Polly DM, Tanksley CL, Duncan A. COVID-19-associated hyperviscosity: a link between inflammation and thrombophilia?. Lancet. (2020) 395:1758–9. doi: 10.2139/ssrn.3598209 57. Driggin E, Madhavan MV, Bikdeli B, Chuich T, Laracy J, Biondi-Zoccai G, et al. Cardiovascular considerations for patients, health care workers, and health systems during the COVID-19 pandemic. J Am Coll Cardiol. (2020) 75:2352–71. doi: 10.1016/j.jacc.2020.03.031 p 74. Hottz ED, Azevedo-Quintanilha IG, Palhinha L, Teixeira L, Barreto EA, Pão CR, et al. Platelet activation and platelet-monocyte aggregate formation trigger tissue factor expression in patients with severe COVID-19. Blood J Am Soc Hematol. (2020) 136:1330–41. doi: 10.1182/blood.2020007252 58. Muller I, Cannavaro D, Dazzi D, Covelli D, Mantovani G, Muscatello A, et al. SARS-CoV-2-related atypical thyroiditis. Lancet Diabetes Endocrinol. (2020) 8:739–41. doi: 10.1016/S2213-8587(20)30266-7 75. Panigada M, Bottino N, Tagliabue P, Grasselli G, Novembrino C, Chantarangkul V, et al. Hypercoagulability of COVID-19 patients in intensive care unit. A report of thromboelastography findings and other parameters of hemostasis. J Thromb Haemost. REFERENCES doi: 10.1136/bmj.280.6216.763-a 25. Liang W, Feng Z, Rao S, Xiao C, Xue X, Lin Z, et al. Diarrhoea may be underestimated: a missing link in 2019 novel coronavirus. Gut. (2020) 69:1141–3. doi: 10.1136/gutjnl-2020-320832 46. Keyting WS, McCarver RR, Kovarik JL, Daywitt AL. Pneumatosis intestinalis: a new concept. Radiology. (1961) 76:733–41. doi: 10.1148/76.5.733 47. Shinagare AB, Howard SA, Krajewski KM, Zukotynski KA, Jagannathan JP, Ramaiya NH. Pneumatosis intestinalis and bowel perforation associated with molecular targeted therapy: an emerging problem and the role of radiologists in its management. Am J Roentgenol. (2012) 199:1259– 65. doi: 10.2214/AJR.12.8782 26. Gu S, Chen Y, Wu Z, Chen Y, Gao H, Lv L, et al. Alterations of the gut microbiota in patients with COVID-19 or H1N1 influenza. Clin Infect Dis. (2020) 71:2669–78. doi: 10.1093/cid/ciaa709 27. Singhal R, Shah YM. Oxygen battle in the gut: hypoxia and hypoxia- inducible factors in metabolic and inflammatory responses in the intestine. J Biol Chem. (2020) 295:10493–505. doi: 10.1074/jbc.REV120. 011188 48. Poor A, Braman SS. Pneumatosis intestinalis associated with the tyrosine kinase inhibitor nintedanib. Lung. (2018) 196:373– 5. doi: 10.1007/s00408-018-0118-6 28. Gout T, Östör AJ, Nisar MK. Lower gastrointestinal perforation in rheumatoid arthritis patients treated with conventional DMARDs or tocilizumab: a systematic literature review. Clin Rheumatol. (2011) 30:1471. doi: 10.1007/s10067-011-1827-x 49. Yanaru R, Hizawa K, Nakamura S, Yoshimura R, Watanabe K, Nakamura U, et al. Regression of pneumatosis cystoides intestinalis after discontinuing of alpha-glucosidase inhibitor administration. J Clin Gastroenterol. (2002) 35:204–5. doi: 10.1097/00004836-200208000- 00020 29. Strangfeld A, Richter A, Siegmund B, Herzer P, Rockwitz K, Demary W, et al. Risk for lower intestinal perforations in patients with rheumatoid arthritis treated with tocilizumab in comparison to treatment with other biologic or conventional synthetic DMARDs. Ann Rheumatic Dis. (2017) 76:504–10. doi: 10.1136/annrheumdis-2016-209773 50. Knechtle SJ, Davidoff AM, Rice RP. Pneumatosis intestinalis. Surgical management and clinical outcome. Ann Surg. (1990) 212:160. doi: 10.1097/00000658-199008000-00008 51. Höer J, Truong S, Virnich N, Füzesi L, Schumpelick V. Pneumatosis cystoides intestinalis: confirmation of diagnosis by endoscopic puncture a review of pathogenesis, associated disease and therapy and a new theory of cyst formation. Endoscopy. (1998) 30:793–9. doi: 10.1055/s-2007-1001424 30. Kuhn KA, Manieri NA, Liu TC, Stappenbeck TS. IL-6 stimulates intestinal epithelial proliferation and repair after injury. PLoS ONE. (2014) 9:e114195. doi: 10.1371/journal.pone.0114195 June 2021 | Volume 8 | Article 638075 Frontiers in Medicine | www.frontiersin.org 10 Miyara et al. Pneumatosis Intestinalis in COVID-19 52. Frontiers in Medicine | www.frontiersin.org REFERENCES Improvements in health-related quality of life after treatment with tocilizumab in patients with rheumatoid arthritis refractory to tumour necrosis factor inhibitors: results from the 24-week randomized controlled RADIATE study. Rheumatology. (2012) 51:1860–9. doi: 10.1093/rheumatology/kes131 Conflict of Interest: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest. 66. Roche. Roche provides an update on the phase III COVACTA trial of Actemra/RoActemra in hospitalised patients with severe COVID-19 associated pneumonia. Available online at: https://www.roche.com/dam/jcr: 6d8de90d-2e31-43c8-b4e1-0a24a2675015/en/29072020-mr-covacta.pdf Copyright © 2021 Miyara, Becker, Guevara, Kirsch, Metz, Shoaib, Grodstein, Nair, Jandovitz, McCann-Molmenti, Hayashida, Takegawa, Shinozaki, Yagi, Aoki, Nishikimi, Choudhary, Cho, Zanos, Zafeiropoulos, Hoffman, Watt, Lumermann, Aronsohn, Shore-Lesserson and Molmenti. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. 67. Guaraldi G, Meschiari M, Cozzi-Lepri A, Milic J, Tonelli R, Menozzi M, et al. Tocilizumab in patients with severe COVID-19: a retrospective cohort study. Lancet Rheumatol. (2020) 2:e474–84. doi: 10.1016/S2665-9913(20)30173-9 68. Kewan T, Covut F, Al–Jaghbeer MJ, Rose L, Gopalakrishna KV, Akbik B. Tocilizumab for treatment of patients with severe COVID−19: a retrospective cohort study. EClinicalMedicine. (2020) 24:100418. doi: 10.1016/j.eclinm.2020.100418 June 2021 | Volume 8 | Article 638075 Frontiers in Medicine | www.frontiersin.org 11
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More Active Internet-Search on Google and Twitter Posting for COVID-19 Corresponds with Lower Infection Rate in the 50 U.S. States Jiachen Sun  Sun Yat-sen University Peter Gloor  (  pgloor@mit.edu ) MIT Center for Collective Intelligence Introduction “At every crucial moment, American officials were weeks or months behind the reality of the outbreak. Those delays likely cost tens of thousands of lives”. NYT June 26, 2020 [1] “At every crucial moment, American officials were weeks or months behind the reality of the outbreak. Those delays likely cost tens of thousands of lives”. NYT June 26, 2020 [1] Since the beginning of January 2020, the world has been turned upside down. Nothing is like it was before since the novel coronavirus disease was first reported in Wuhan, China, in December 2019 [2]. After initial blunders, China took energetic measures to combat the virus (e.g. the Wuhan shutdown) [3] while the Western world was still mostly complacent. Although epidemiologists have already warned at the end of January that COVID–19 would probably turn into a global crisis [4], politicians and the population in the US and Western Europe alike initially ignored the problem. The virus was seen as something far away, that like SARS and the avian flu would be active mostly in the high-density populations of Asia and then go away. And even when Italy was shaken with a virulent COVID–19 outbreak in February [5], which closed down the northern industrial heartland of Veneto, the US authorities were still mostly ignoring the problem [6]. Only when in mid-March New York started seeing soaring infection rates, did the population and the politicians start taking the disease seriously. This behavior is perfectly reflected in the Google search trend and the Twitter activity, motivating our research question: Is a state or political entity better capable of dealing with an infectious disease if the collective awareness is raised early on in the course of the disease? Does a population actively searching for information about COVID–19, and showing a robust dialog on Twitter about this topic deal more efficiently with the disease? It has been illustrated that data from the online social media and Internet searches are correlated with several epidemics that have previously happened, such as seasonal influenza epidemics [7], Dengue [8], MERS [9] and H1N1 [10]. Regarding COVID–19, several works [11–14] have demonstrated significant correlation between the Internet search and the pandemic spreading among different countries. However, it still remains unclear what regional factors the Internet’s predictive abilities may relate to, and whether they are useful surveilling the spread of the disease. Research Article License:   This work is licensed under a Creative Commons Attribution 4.0 International License. License:   This work is licensed under a Creative Commons Attribution 4.0 International License. Read Full License Page 1/13 Abstract As the novel coronavirus disease 2019 (COVID-19) continues to rage worldwide, the United States has become the most affected country with more than 2.5 million total confirmed cases up to now (June 2, 2020). In this work, we investigate the predictive power of online social media and Internet search for the COVID-19 pandemic among 50 U.S. states. By collecting the state-level daily trends through both Twitter and Google Trends, we observe a high but state-different lag correlation with the number of daily confirmed cases. We further find that the predictive accuracy measured by the correlation coefficient is positively correlated to a state’s demographic, air traffic volume and GDP development. Most importantly, we show that a state’s early infection rate is negatively correlated with the lag to the previous peak in Internet search and tweeting about COVID-19, indicating that the earlier the collective awareness on Twitter/Google in a state, the lower is the infection rate. Introduction If there is indeed predictive power in the Google search and tweeting behavior of a US polity such as a state or a city, it will give invaluable input to Page 2/13 Page 2/13 policymakers, governments, and healthcare providers to better prepare and deal with potential future waves of the COVID–19 and other epidemics. policymakers, governments, and healthcare providers to better prepare and deal with potential future waves of the COVID–19 and other epidemics. In this work, using the data from 50 states of the United States, we conduct a comparative study about the role of online social media and search trends in the COVID–19 epidemic. We show that the daily number of COVID–19 related tweets in Twitter exhibits a strong but state-different lag correlation with newly confirmed cases. The same can be observed on the Google Trends index using coronavirus-related search terms. These state-differences in predictive capabilities in terms of correlation strength and lag are closely related to a state’s demographics, quantitively measured by a state’s population size and density, air traffic volume and economic development. Further, our analysis on the state-level early COVID–19 incidents demonstrates a significantly negative correlation between the lag and the early infection rate, implying that an actively engaged population that searches for information and tweets about COVID–19 more ahead of the outbreak indicates a lower infection rate. Predictive Power for Google Trend and Twitter Predictive Power for Google Trend and Twitter We focus on COVID–19 infections, Twitter tweets and Google search data for all 50 U.S. states, excluding Puerto Rico and the District of Columbia since some Internet data for these two regions are unavailable. Specifically, we collect the state-level daily COVID–19 confirmed cases from the New York Times. The number of COVID–19 related tweets in each individual state is extracted from an open COVID–19 Twitter chatter dataset [15]. We obtain the Google Trends index by using a combination of one of three keywords (‘coronavirus’, ‘COVID’ and ‘COVID19’) and a state’s full name as an integrated search term (e.g. ‘coronavirus Massachusetts’, ‘COVID California’), given that residents are usually more concerned about their local situation of the pandemic. More details of data used in this study are described in the Methods section. ‘coronavirus Massachusetts’, ‘COVID California’), given that residents are usually more concerned about their local situation of the pandemic. More details of data used in this study are described in the Methods section. In Fig. 1, we illustrate a comparison among the daily confirmed cases, number of COVID–19 related tweets and the Google Trends indexes (with different search terms) in New York, Massachusetts, Iowa and California. One can observe that the overall graph patterns are different between states. We then investigate the relationship between the COVID–19 pandemic spreading and the Internet data in all 50 U.S. states. Fig. 2 shows the lagged Spearman correlation between the Internet data from Twitter and Google Trends and the reported COVID–19 cases for the selected 4 states. To quantify the predictive power of the tweeting behavior and the search activity for an individual state, we denote 𝑐∗ as the highest correlation coefficient and 𝑙∗ as the optimal lag achieving 𝑐∗. In principle, a larger 𝑐∗ indicates a higher accuracy in predicting the state-specify pandemic. A larger 𝑙∗ corresponds to an earlier peak of Internet searches and tweeting about COVID–19, indicating that residents start being active on the Internet earlier. We find that 𝑐∗ and 𝑙∗ are quite different among different states and between Google Trends and Twitter (see Fig. 2). For instance, for New York, 𝑐∗ is merely 0.60 with 𝑙∗ = 15 using the Twitter data but is up to 0.95 with 𝑙∗ = 19 for tracking ‘coronavirus New York’ on Google Trends. Predictive Power for Google Trend and Twitter For Page 3/13 Page 3/13 Page 3/13 California, the 𝑐∗ of Twitter and of ‘coronavirus California’ on Google Trends are 0.67 and 0.81, respectively, while the 𝑙∗ for both is above 30 days. Fig.3 presents the distribution of 𝑐∗ and 𝑙∗ for Twitter and Google Trends for all 50 U.S. states. The average of 𝑐∗ from Twitter is 0.64, while for Google Trend using the keyword ‘COVID’ 𝑐∗ is nearly 0.70. These results imply that the tweeting activity and search interest indeed have the capability to predict the COVID–19 spreading. On the other hand, the average 𝑙∗ on Twitter is about 26 days, revealing a smaller delay of the Twitter platform. Indeed, we find that 𝑐∗ and 𝑙∗ on Twitter are significantly correlated with 𝑝<0.001 (see the correlation coefficient between 𝑐∗ and 𝑙∗ in Supplementary Table 1), meaning that earlier collective tweeting may result in more accurate prediction. For Google Trends, the average 𝑙∗ of the keyword ‘coronavirus’ (27.0) is somehow larger than both ‘COVID’ (21.3) and ‘COVID–19’(24.5). An explanation could be that the majority of people searched by the word ‘coronavirus’ since the pandemic initially was reported under this name, while the names ‘COVID’ and ‘COVID–19’ were formally proposed by the World Health Organization at the end of February 2020. Correlation between 𝒄∗ and state conditions Correlation between 𝒄∗ and state conditions We find that the wide difference of 𝑐∗ among the 50 states is partially related to a state’s economic and social conditions. Specifically, we consider population demographics, air traffic flow and the economic development level, which can be quantitively characterized by the following proxies. A state’s population size as of 2019 is estimated by the U.S. Census Bureau, along with the population density measured by number of residents per square mile. The air traffic flow is measured by enplanement (i.e., the number of passengers boarding) in 2017 and 2018 (see details in the Methods Section). Besides, we collect each state’s gross domestic product (GDP) as well as the GDP per capita as of 2019 4th quarter to measure economic output. We calculate the Spearman correlation coefficient between these six variables and the 𝑐∗of Twitter volume and Google Trends index, finding a significantly positive correlation, as shown in Table 1. In particular, the more people, the higher population density, the higher air traffic and wealth a state has, the more accurate the Twitter and Google Trends predict the COVID–19 pandemic. This makes intuitive sense, as higher income is correlated with higher education, and higher geographic mobility leads to a higher information exchange, both raising early awareness of the pandemic. There is no significant correlation between 𝑙∗ and the states’ demographic variables. Page 4/13 c*     Twitter Google Trend   (coronavirus) Google Trend   (COVID) Google Trend   (COVID-19) Population size (2019) 0.505*** 0.210 0.340* 0.573*** Population density (2019) 0.374** 0.302* 0.414** 0.473*** Enplanements (2018) 0.303* 0.355* 0.416** 0.609*** Enplanements (2017) 0.301* 0.360* 0.421** 0.610*** GDP (2019 Q4) 0.535*** 0.229 0.374** 0.599*** GDP per capita (2019 Q4) 0.244 0.379** 0.517*** 0.432** Table 1. Correlation coefficient between c* and states’ variables in terms of population demographics, air traffic flow and the economic development level (N = 50). The significance level is denoted by stars in red: * 𝑝<0.05, ** 𝑝<0.01, *** 𝑝<0.001 Table 1. Correlation coefficient between c* and states’ variables in terms of population demographics, air traffic flow and the economic development level (N = 50). The significance level is denoted by stars in red: * 𝑝<0.05, ** 𝑝<0.01, *** 𝑝<0.001 Correlation between early infected rate and 𝒄∗/𝒍∗ We further figure out the effect of an actively engaged population on the outbreak of the infection. We further figure out the effect of an actively engaged population on the outbreak of the infection. Conclusion In conclusion, this study showed that there is a high but state-different correlation between the results of Google search and tweeting about COVID–19 related keywords and the number of confirmed COVID–19 cases among 50 U.S. states. These significant correlations occur as early as 27 days before confirmation of the infections, indicating the usefulness of Internet search and online social media tracking to surveil the pandemic’s outbreak locally. We further found that the differences in predictive power between these states are closely related to a state’s demographics characterized by population size and density, air traffic and economic development. Most importantly, we discovered that if there is an actively tweeting population which leads a vibrant dialog on Twitter about COVID–19, the early infection rate will be lower. Similarly, the more ahead of the outbreak a population starts googling for COVID–19 information, the lower the early infection rate. Correlation between 𝒄∗ and state conditions Specifically, we focus on the early stage of the COVID–19 outbreak in the 50 U.S. states, a period when the government had not started yet to take serious control measures. The infection rate in this stage is a reasonable proxy to measure the extent to which a state’s residents rely on their individual awareness to protect themselves again the pandemic. Quantitively, we define the early infection rate as the proportion of residents being infected in the earliest 𝑇 days since the state-level first case was confirmed (see the distribution of the early infection rate among 50 states in the Supplementary Figure 2). Having both the predictive capacity of Internet search and Twitter data and the early infection rate, we are able to find the relationship between the two. Surprisingly, we discover a strong negative correlation between 𝑙∗ and the early infection rate, with 𝑇 varying from 1 week to 3 weeks, as shown in Table 2. This relationship indicates that the earlier people start tweeting and searching, the lower is the infection rate. In other words, the earlier the collective awareness on Twitter and on Google search, the less people get infected when the virus outbreaks. Moreover, we also find a significantly negative correlation between 𝑐∗ and the infection rate using the Twitter data and Google Trends for the terms ‘COVID’ and ‘COVID- 19’ on Page 5/13 selected 𝑇′𝑠 (see Table 2), implying that the more predictive pro-active Internet-search behavior is, the lower the initial infected rate. Table 2. Correlation coefficient between early infection rate for different T (number of days) and l* an c* from Internet data (N = 50). Similar to Table 1, the red stars represent the significance level. Early infection rate   T=7 T=14 T=21             l* Twitter -0.371** -0.405** -0.416** Google Trend   (coronavirus)   -0.471***   -0.517***   -0.500*** Google Trend   (COVID)   -0.473***   -0.517***   -0.505*** Google Trend   (COVID-19)   -0.445**   -0.516***   -0.522***             c* Twitter -0.566*** -0.593*** -0.476*** Google Trend   (coronavirus)   -0.139   -0.08   -0.100 Google Trend   (COVID)   -0.371**   -0.374**   -0.167 Google Trend   (COVID-19)   -0.543***   -0.510***   -0.270 relation coefficient between early infection rate for different T (number of net data (N = 50). Similar to Table 1, the red stars represent the significanc Methods Page 6/13 C - Cases in U.S. We collect the COVID–19 confirmed cases from the New York Times (https://www.nytimes.com/), based on reports from state and local health agencies. 50 U.S. states’ daily number of cases are used in this study. For each state, the study period is from the date of the first confirmed case in this state to June 2, 2020. CTwitter ata. The COVID–19 tweets on Twitter are acquired from an open COVID–19 Twitter chatter dataset [15], which is a collection of the identifiers of tweets specifically using coronavirus-related keywords (coronavirus, 2019nCoV, COVD19, CoronavirusPandemic, CoronaOutbreak, etc.), starting from January 27, 2020. After hydrating the full JSON objects from these tweets’ identifiers, we extract the daily number of tweets in the U.S. at state level according to a tweet’s location. Specifically, we first identify all geo-located tweets (i.e., tweet associated with a geographic place), only retaining tweets with a location in the US. Then we assign a tweet to a state using its specific location, such as city and town (see the heatmap of the number of available geo-located tweets in 50 U.S. states in the Supplementary Figure 1). Google Trends and Keywords. As the most used search engine in U.S., Google Trends (https://www.google.com/trends) provides an excellent proxy for Internet-search trends. The Google Trends index measures the search activity of a term compared to the most actively searched keyword for a selected region. In this work, we use the pytrends API to track three respective keywords, ‘coronavirus’, ‘COVID’ and ‘COVID19’ on Google Trends among 50 U.S. states. For each individual state, we use a combination of a coronavirus-related keyword and the state’s full name as an integrated search term throughout this paper. The time parameter is set to two weeks earlier than the COVID–19 outbreak date in each state. Google Trends and Keywords. As the most used search engine in U.S., Google Trends Correlation analysis. The Spearman correlation is employed in this study using Python’s SciPy function. Specifically, we conduct lagged correlation analyses to assess the temporal relationships between Internet data and COVID–19 pandemic. For each state, we right-shift the daily Internet data from Twitter and Google Trends (with different search terms) by a variable lag and calculate the Spearman correlation to the daily reported COVID–19 cases. The maximum lag is set to 40 days. Methods Spearman correlation is also used to examine the correlation between the 𝑐∗ and the state’s variables, and between the 𝑐∗/𝑙∗ and the early infection rate, at significance levels from *𝑝<0.05 to ***𝑝<0.001. Proxy of air traffic flow. Using the Air Carrier Activity Information System database (https://www.faa.gov/airports/planning_capacity/passenger_allcargo_stats/passenger/collection/),, we obtain the enplanement data at every commercial service airport in U.S. for 2017 and 2018. As a proxy of a state’s air traffic flow we calculate the sum of the enplanements of all airports located in a state. Declarations Code availability Page 7/13 Sourcecodesandallprocesseddatausedinthisstudyisavailableat https://www.researchgate.net/profile/Jiachen_Sun2/publications Sourcecodesandallprocesseddatausedinthisstudyisavailableat https://www.researchgate.net/profile/Jiachen_Sun2/publications Author Contribution P. G. conceived the project. J. S. designed the experiments and analyzed the results. J. S. and P. G. wrote the manuscript. Additional information Competing interests. The authors declare no competing interests. p.19386. p.19386. 11. Effenberger, M., Kronbichler, A., Shin, J.I., Mayer, G., Tilg, and Perco, P., 2020. Association of the COVID-19 pandemic with internet search volumes: a google trendstm analysis. International Journal of Infectious Diseases. 12. i, C., Chen, .J., Chen, X., Zhang, M., Pang, C.P. and Chen, H., 2020. Retrospective analysis of the possibility of predicting the COVID-19 outbreak from Internet searches and social media data, China, 2020. Eurosurveillance, 25(10), p.2000199. 12. i, C., Chen, .J., Chen, X., Zhang, M., Pang, C.P. and Chen, H., 2020. Retrospective analysis of the possibility of predicting the COVID-19 outbreak from Internet searches and social media data, China, 2020. Eurosurveillance, 25(10), p.2000199. 13. in, H., iu, C.H. and Chiu, Y.C., 2020. Google searches for the keywords of “wash hands” predict the speed of national spread of COVID-19 outbreak among 21 countries. Brain, Behavior, and Immunity. 13. in, H., iu, C.H. and Chiu, Y.C., 2020. Google searches for the keywords of “wash hands” predict the speed of national spread of COVID-19 outbreak among 21 countries. Brain, Behavior, and Immunity. 14. Walker, , Hopkins, C. and Surda, P., 2020, April. The use of google trends to investigate the loss of smell related searches during COVID‐19 outbreak. In International Forum of Allergy & Rhinology. 14. Walker, , Hopkins, C. and Surda, P., 2020, April. The use of google trends to investigate the loss of smell related searches during COVID‐19 outbreak. In International Forum of Allergy & Rhinology. 15. Banda, Juan M., Tekumalla, Ramya, Wang, Guanyu, Yu, Jingyuan, iu, Tuo, Ding, Yuning, Artemova, Katya, Tutubalinа, Elena and Chowell, Gerardo. 2020. A large-scale COVID-19 Twitter chatter dataset for open scientific research - an international collaboration. doi: 10.5281/zenodo.3723939. http://www.panacealab.org/covid19/ 15. Banda, Juan M., Tekumalla, Ramya, Wang, Guanyu, Yu, Jingyuan, iu, Tuo, Ding, Yuning, Artemova, Katya, Tutubalinа, Elena and Chowell, Gerardo. 2020. A large-scale COVID-19 Twitter chatter dataset for open scientific research - an international collaboration. doi: 10.5281/zenodo.3723939. http://www.panacealab.org/covid19/ Figures References 1. Watkins, , Holder, J., Glans J., Cai, W., Carey, B. and White J., How the virus won. New York Times. https://www.nytimes.com/interactive/2020/us/coronavirus-spread.html 2. Zhu, , Zhang, D., Wang, W., i, X., Yang, B., Song, J., Zhao, X., Huang, B., Shi, W., u, R. and Niu, P., 2020. A novel coronavirus from patients with pneumonia in China, 2019. New England Journal of Medicine. 3. Tian, H., iu, , i, Y., Wu, C.H., Chen, B., Kraemer, M.U., i, B., Cai, J., Xu, B., Yang, Q. and Wang, B., 2020. An investigation of transmission control measures during the first 50 days of the COVID-19 epidemic in China. Science, 368(6491), pp.638-642. 4. i, , Pei, S., Chen, B., Song, Y., Zhang, T., Yang, W. and Shaman, J., 2020. Substantial undocumented infection facilitates the rapid dissemination of novel coronavirus (SARS-CoV-2). Science, 368(6490), pp.489-493. 5. Remuzzi, A. and Remuzzi, G., 2020. COVID-19 and Italy: what next?. The Lancet. 6. ipton, E., Sanger, D., Haberman, M., Shear, D.M., Mazzetti, M. and Branes, E.J., He could have seen what was coming: behind Trump’s failure on the virus. New York Times. https://www.nytimes.com/2020/04/11/us/politics/coronavirus-trump-response.html 7. Ginsberg, J., Mohebbi, M.H., Patel, R.S., Brammer, ., Smolinski, M.S. and Brilliant, ., Detecting influenza epidemics using search engine query data. Nature, 457(7232), pp.1012-1014. 8. de Almeida Marques-Toledo, , Degener, C.M., Vinhal, ., Coelho, G., Meira, W., Codeço, C.T. and Teixeira, M.M., 2017. Dengue prediction by the web: Tweets are a useful tool for estimating and forecasting Dengue at country and city level. PLoS neglected tropical diseases, 11(7), p.e0005729. 9. Shin, Y., Seo, D.W., An, J., Kwak, H., Kim, S.H., Gwack, J. and Jo, M.W., 2016. High correlation of Middle East respiratory syndrome spread with Google search and Twitter trends in Korea. Scientific reports, 6, p.32920. 9. Shin, Y., Seo, D.W., An, J., Kwak, H., Kim, S.H., Gwack, J. and Jo, M.W., 2016. High correlation of Middle East respiratory syndrome spread with Google search and Twitter trends in Korea. Scientific reports, 6, p.32920. 10. Wilson, , Mason, K., Tobias, M., Peacey, M., Huang, Q.S. and Baker, M., 2009. Interpreting “Google Flu Trends” data for pandemic H1N1 influenza: the New Zealand experience. Eurosurveillance, 14(44), 10. Wilson, , Mason, K., Tobias, M., Peacey, M., Huang, Q.S. and Baker, M., 2009. Interpreting “Google Flu Trends” data for pandemic H1N1 influenza: the New Zealand experience. Eurosurveillance, 14(44), Page 8/13 Page 8/13 Figures Page 9/13 Figure 1 Number of COVID-19 related tweets, Google Trends index using different COVID-19 keywords (integrated with the state’s full name) and daily infected number in 4 states. The values of each curve are normalize to [0, 100] for comparison. Figure 1 Figure 3 Distribution of 𝑐∗ and 𝑙∗ over 50 states for (a) Twitter and (b-d) Google Trends with different keywords. Distribution of 𝑐∗ and 𝑙∗ over 50 states for (a) Twitter and (b-d) Google Trends with different keywords. Figure 1 Number of COVID-19 related tweets, Google Trends index using different COVID-19 keywords (integrated with the state’s full name) and daily infected number in 4 states. The values of each curve are normalized to [0, 100] for comparison. Page 10/13 gure 2 ustration of lagged correlation between new confirmed COVID-19 infections and data from Google rends and Twitter in selected 4 states. Figure 2 Illustration of lagged correlation between new confirmed COVID-19 infections and data from Google Trends and Twitter in selected 4 states. Page 11/13 Figure 3 Figure 3 Distribution of 𝑐∗ and 𝑙∗ over 50 states for (a) Twitter and (b-d) Google Trends with different keywords. Figure 3 Page 12/13 This is a list of supplementary files associated with this preprint. Click to download. This is a list of supplementary files associated with this preprint. Click to d Page 12/13 This is a list of supplementary files associated with this preprint. Click to download. COVID19PredictionSI.pdf COVID19PredictionSI.pdf COVID19PredictionSI.pdf Page 13/13
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Reported Cases and Deaths of National Notifiable Infectious Diseases — China, January 2023*
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Chinese Center for Disease Control and Prevention China CDC Weekly China CDC Weekly Notifiable Infectious Diseases Reports Notifiable Infectious Diseases Reports Notifiable Infectious Diseases Reports Reported Cases and Deaths of National Notifiable Infectious Diseases — China, January 2023*    Diseases Cases Deaths Plague 0 0 Cholera 0 0 SARS-CoV 0 0 Acquired immune deficiency syndrome† 1,815 1,777 Hepatitis 89,719 32  Hepatitis A 523 0  Hepatitis B 74,790 18  Hepatitis C 12,785 13  Hepatitis D 17 0  Hepatitis E 1,144 1 Other hepatitis 460 0 Poliomyelitis 0 0 Human infection with H5N1 virus 0 0 Measles 18 0 Epidemic hemorrhagic fever 217 2 Rabies 5 15 Japanese encephalitis 4 0 Dengue 1 0 Anthrax 19 0 Dysentery 1,924 0 Tuberculosis 53,730 327 Typhoid fever and paratyphoid fever 184 0 Meningococcal meningitis 6 0 Pertussis 883 0 Diphtheria 0 0 Neonatal tetanus 6 0 Scarlet fever 276 0 Brucellosis 2,318 0 Gonorrhea 4,762 0 Syphilis 28,708 3 Leptospirosis 6 0 Schistosomiasis 0 0 Malaria 149 2 Human infection with H7N9 virus 0 0 Influenza 15,270 0 Mumps 2,370 0 Rubella 40 0 ted Cases and Deaths of National Notifiable Infectious Diseases — China, January 2023* Reported Cases and Deaths of National Notifiable Infectious Diseases — China, January 2023* CCDC Weekly / Vol. 5 / No. 30 674 Continued Diseases Cases Deaths Acute hemorrhagic conjunctivitis 1,156 0 Leprosy 14 0 Typhus 33 0 Kala azar 17 0 Echinococcosis 240 0 Filariasis 0 0 Infectious diarrhea§ 42,950 0 Hand, foot and mouth disease 2,484 0 Total 249,324 2,158 * According to the National Bureau of Disease Control and Prevention, not included coronavirus disease 2019 (COVID-19). † The number of deaths of acquired immune deficiency syndrome (AIDS) is the number of all-cause deaths reported in the month by cumulative reported AIDS patients. § Infectious diarrhea excludes cholera, dysentery, typhoid fever and paratyphoid fever. The numbers of cases and cause-specific deaths refer to data recorded in National Notifiable Disease Reporting System in China, which includes both clinically-diagnosed cases and laboratory-confirmed cases. Only reported cases of the 31 provincial-level administrative divisions in Chinese mainland are included in the table, whereas data of Hong Kong Special Administrative Region, Macau Special Administrative Region, and Taiwan, China are not included. Monthly statistics are calculated without annual verification which is usually conducted in February of the next year for de- duplication and verification of reported cases in annual statistics. Chinese Center for Disease Control and Prevention doi: 10.46234/ccdcw2023.060 Notifiable Infectious Diseases Reports Therefore, 12-month cases could not be added together directly to calculate the cumulative cases because the individual information might be verified via National Notifiable Disease Reporting System according to information verification or field investigations by local CDCs. China CDC Weekly China CDC Weekly Continued Acute hemorrhagic conjunctivitis Infectious diarrhea§ Hand, foot and mouth disease Hand, foot and mouth disease Total * According to the National Bureau of Disease Control and Prevention, not included coronavirus disease 2019 (COVID-19). † The number of deaths of acquired immune deficiency syndrome (AIDS) is the number of all-cause deaths reported in the month by cumulative reported AIDS patients. § Infectious diarrhea excludes cholera, dysentery, typhoid fever and paratyphoid fever. The numbers of cases and cause-specific deaths refer to data recorded in National Notifiable Disease Reporting System in China, which includes both clinically-diagnosed cases and laboratory-confirmed cases. Only reported cases of the 31 provincial-level administrative divisions in Chinese mainland are included in the table, whereas data of Hong Kong Special Administrative Region, Macau Special Administrative Region, and Taiwan, China are not included. Monthly statistics are calculated without annual verification which is usually conducted in February of the next year for de- duplication and verification of reported cases in annual statistics. Therefore, 12-month cases could not be added together directly to calculate the cumulative cases because the individual information might be verified via National Notifiable Disease Reporting System according to information verification or field investigations by local CDCs. * According to the National Bureau of Disease Control and Prevention, not included coronavirus disease 2019 (COVID-19). † The number of deaths of acquired immune deficiency syndrome (AIDS) is the number of all-cause deaths reported in the month by cumulative reported AIDS patients. § Infectious diarrhea excludes cholera, dysentery, typhoid fever and paratyphoid fever. The numbers of cases and cause-specific deaths refer to data recorded in National Notifiable Disease Reporting System in China, which includes both clinically-diagnosed cases and laboratory-confirmed cases. Only reported cases of the 31 provincial-level administrative divisions in Chinese mainland are included in the table, whereas data of Hong Kong Special Administrative Region, Macau Special Administrative Region, and Taiwan, China are not included. Monthly statistics are calculated without annual verification which is usually conducted in February of the next year for de- duplication and verification of reported cases in annual statistics. Notifiable Infectious Diseases Reports Therefore, 12-month cases could not be added together directly to calculate the cumulative cases because the individual information might be verified via National Notifiable Disease Reporting System according to information verification or field investigations by local CDCs. ( ) mune deficiency syndrome (AIDS) is the number of all-cause deaths reported in the month by of acquired immune deficiency syndrome (AIDS) is the number of all-cause deaths reported in the month by patients. † The number of deaths of acquired immune deficiency syndrome (AIDS) is the number of all-cause deaths reported in the month by cumulative reported AIDS patients. § Infectious diarrhea excludes cholera, dysentery, typhoid fever and paratyphoid fever. The numbers of cases and cause-specific deaths refer to data recorded in National Notifiable Disease Reporting System in China, which includes both clinically-diagnosed cases and laboratory-confirmed cases. Only reported cases of the 31 provincial-level administrative divisions in Chinese mainland are included in the table, whereas data of Hong Kong Special Administrative Region, Macau Special Administrative Region, and Taiwan, China are not included. Monthly statistics are calculated without annual verification which is usually conducted in February of the next year for de- duplication and verification of reported cases in annual statistics. Therefore, 12-month cases could not be added together directly to calculate the cumulative cases because the individual information might be verified via National Notifiable Disease Reporting System according to information verification or field investigations by local CDCs. doi: 10.46234/ccdcw2023.060 CCDC Weekly / Vol. 5 / No. 30 675 Chinese Center for Disease Control and Prevention
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PC3 Human Prostate Carcinoma Cell Holoclones Contain Self-renewing Tumor-Initiating Cells
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Chlorido(<i>η</i><sup>4</sup>-cycloocta-1,5-diene)(<i>N</i>,<i>N</i>′-diethylthiourea-κ<i>S</i>)rhodium(I)
Acta crystallographica. Section E
2,010
cc-by
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Related literature Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: NG5033). For coordination modes of thiourea and thiourea-based ligands, see: Wilkinson (1987); Gibson et al. (1994); Robinson et al. (2000). For the application of thioureas as ligands for metal precursors in asymmetric catalysis, see: Breuzard et al. (2000). For related Rh(I) complexes containing thiourea ligands, see: Cauzzi et al. (1995, 1997). For structural data of the N,N0-diethylthiourea ligand, see: Ramnathan et al. (1995). Giovanna Brancatelli,* Dario Drommi, Giuseppe Bruno and Felice Faraone Dip. di Chimica Inorganica Chimica Analitica e Chimica Fisica, Universita´ degli Studi di Messina, Via Salita Sperone 31, I-98166 Vill. S. Agata - Messina, Italy Correspondence e-mail: gbrancatelli@unime.it Received 15 September 2010; accepted 4 October 2010 Key indicators: single-crystal X-ray study; T = 293 K; mean (C–C) = 0.003 A˚; R factor = 0.016; wR factor = 0.042; data-to-parameter ratio = 16.1. Received 15 September 2010; accepted 4 October 2010 Key indicators: single-crystal X-ray study; T = 293 K; mean (C–C) = 0.003 A˚; R factor = 0.016; wR factor = 0.042; data-to-parameter ratio = 16.1. D—H  A D—H H  A D  A D—H  A N1—H1  Cl1 0.86 2.39 3.152 (3) 148 N2—H2  Cl1i 0.86 2.89 3.356 (3) 116 Symmetry code: (i) x þ 1; y; z. In the title rhodium(I) complex, [RhCl(C8H12)(C5H12N2S)], N,N0-diethylthiourea acts as a monodenate S-donor ligand. In the title rhodium(I) complex, [RhCl(C8H12)(C5H12N2S)], N,N0-diethylthiourea acts as a monodenate S-donor ligand. The rhodium(I) coordination sphere is completed by the Cl atom and the COD [= 1,5-cyclooctadiene] ligand interacting through the -electrons of the double bonds. If the midpoints of these two bonds are taken into account, the Rh atom exhibits a distorted square-planar coordination. The syn conformation of the N,N0-diethylthiourea ligand with respect to the Cl atom is stabilized by an intramolecular N—H  Cl hydrogen bond. Aweak intermolecular N—H  Cl interaction links molecules along the a axis. Data collection: COLLECT (Nonius, 1998); cell refinement: DIRAX/LSQ (Duisenberg, 1992); data reduction: EVALCCD (Duisenberg et al., 2003); program(s) used to solve structure: SIR2004 (Burla et al., 2005); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: XP in SHELXTL (Sheldrick, 2008); software used to prepare material for publication: WinGX (Farrugia, 1999). The authors would like to thank the University of Messina and the MIUR (Ministero dell’Istruzione, dell’Universita´ e della Ricerca) for financial support. metal-organic compounds metal-organic compounds  = 94.765 (5) V = 759.7 (7) A˚ 3 Z = 2 Mo K radiation  = 1.42 mm1 T = 293 K 0.60  0.24  0.16 mm Data collection Bruker–Nonius Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2001) Tmin = 0.540, Tmax = 0.710 12830 measured reflections 2656 independent reflections 2585 reflections with I > 2(I) Rint = 0.015 Refinement R[F 2 > 2(F 2)] = 0.016 wR(F 2) = 0.042 S = 0.97 2656 reflections 165 parameters H-atom parameters constrained max = 0.41 e A˚ 3 min = 0.35 e A˚ 3  = 1.42 mm1 T = 293 K 0.60  0.24  0.16 mm Acta Crystallographica Section E Structure Reports Online ISSN 1600-5368 Acta Crystallographica Section E Structure Reports Online ISSN 1600-5368 m1368 Brancatelli et al. S1. Comment Thiourea and thiourea-based ligands form complexes with a number of transition metals (Wilkinson, 1987; Gibson et al., 1994; Robinson et al., 2000) and their application as ligands for metal catalyst in styrene hydroformylation has been recently shown (Breuzard et al., 2000). In order to investigate the coordination chemistry of symmetrically substituted thiourea derivatives as ligands for metal complexes applicable in asymmetric catalysis, the reaction between chloro(η4-1,5-cyclooctadiene)rhodium(I) dimer and N,N′-diethylthiourea has been performed in dichloromethane. The obtained crystals were identified as the title compound by single-crystal X-ray diffraction. Figure 1 shows that in the compound (I) structure the N,N′-diethylthiourea acts as a monodenate S-donor ligand. Therefore the rhodium(I) coordination sphere is completed by a chlorine atom and COD [= 1,5-cyclooctadiene] ligand interacting with the metal center through the π-electrons of the double bonds. If the midpoints of these two bonds are taken into account the rhodium atom displays a distorted square planar coordination, as evidenced by the angles at Rh(1) [M(2)—Rh(1)—S(1) 86.4 (8)°, M(1)—Rh(1)—Cl(1) 88.9 (8)°, M(2)—Rh(1)—M(1) 87.8 (1)°, S(1) —Rh(1)—Cl(1) 96.97 (3)°]. In the thiourea moiety the distance S(1)—C(1) [1.732 (2) Å] is slightly longer than that found in the crystallographic structure of the N,N′-diethythiourea [1.707 (3) Å] (Ramnathan et al., 1995). This lengthening of the S—C bond is consistent with the decreasing double bond character due to the coordination at the metal center. Further the C(1)—S(1)—Rh(1) bond angle value [115.00 (8)°] indicates that the thiourea sulfur is bound to rhodium(I) primarily via a lone pair in a non-bonding sp2 sulfur orbital. C(1)—N(1) and C(1)—N(2) bond lengths [1.331 (3)Å and 1.343 (3) Å] are almost equivalent as expected for symmetrically substituted thiourea molecules. The value of Rh—S bond [2.403 (1) Å] is comparable with those found in similar complexes (Cauzzi et al., 1995, 1997). The syn conformation of the substituent on the sulfur with respect to the chlorine atom is stabilized by the intramolecular N(1) —H(1)···Cl(1) hydrogen bonding interaction. The crystal packing arrangement is stabilized by van der Walls forces and the very weak intermolecular N(2)— H(2)···Cl(1) A hydrogen interaction along the a axis (Fig. 2) between the thioamide N(2) and the Cl(1) A of the neighbor complex molecule generated by applying the crystallographic (x + 1, y, z) symmetry operation. The crystal packing arrangement is stabilized by van der Walls forces and the very weak intermolecular N(2)— H(2)···Cl(1) A hydrogen interaction along the a axis (Fig. References Breuzard, J. A. J., Tommasino, M. L., Touchard, F., Lemaire, M. & Bonnet, M. C. (2000). J. Mol. Catal. A, 156, 223–232. Bruker (2001). SADABS. Bruker AXS Inc., Madison, Wisconsin, USA. Breuzard, J. A. J., Tommasino, M. L., Touchard, F., Lemaire, M. & Bonnet, M. C. (2000). J. Mol. Catal. A, 156, 223–232. M. C. (2000). J. Mol. Catal. A, 156, 223–232. Bruker (2001). SADABS. Bruker AXS Inc., Madison, Wisconsin, USA. ( ) Bruker (2001). SADABS. Bruker AXS Inc., Madison, Wisconsin, USA. Burla, M. C., Caliandro, R., Camalli, M., Carrozzini, B., Cascarano, G. L., De Caro, L., Giacovazzo, C., Polidori, G. & Spagna, R. (2005). J. Appl. Cryst. 38, 381–388. Experimental Crystal data [RhCl(C8H12)(C5H12N2S)] Mr = 378.76 Triclinic, P1 a = 7.295 (5) A˚ b = 8.705 (5) A˚ c = 12.602 (5) A˚  = 101.727 (5)  = 102.058 (5) m1368 Brancatelli et al. doi:10.1107/S Cauzzi, D., Costa, M., Gonsalvi, L., Pellinghelli, M. A., Predieri, G., Tiripicchio, A. & Zanoni, R. (1997). J. Organomet. Chem. 541, 377–389. Cauzzi, D., Lanfranchi, M., Marzolini, G., Predieri, G., Tiripicchio, A., Costa, M. & Zanoni, R. (1995). J. Organomet. Chem. 488, 115–125. Duisenberg, A. J. M. (1992). J. Appl. Cryst. 25, 92–96. Duisenberg, A. J. M. (1992). J. Appl. Cryst. 25, 92–96. Duisenberg, A. J. M., Kroon-Batenburg, L. M. J. & Schreurs, A. M. M. (2003). J. Appl. Cryst. 36, 220–229. Farrugia, L. J. (1999). J. Appl. Cryst. 32, 837–838. Gibson, V. C., Redshaw, C., Clegg, W. & Elsegood, M. R. J. (1994). J. Chem. Gibson, V. C., Redshaw, C., Clegg, W. & Elsegood Gibson, V. C., Redshaw, C., Clegg, W. & Elsegood, M. R. J. (1994). J. Chem. Soc. Chem. Commun. pp. 2635–2636. pp Nonius (1998). COLLECT. Nonius BV, Delft, The Netherlands. Ramnathan, A., Sivakumar, K., Subramanian, K., Janarthanan, N., Ramadas, Ramnathan, A., Sivakumar, K., Subramanian, K., Janarthanan, N., Ramadas, K & Fun H -K (1995) Acta Cryst C51 2446–2450 Ramnathan, A., Sivakumar, K., Subramanian, K., Janarth K. & Fun, H.-K. (1995). Acta Cryst. C51, 2446–2450. Robinson, S. D., Sahajpal, A. & Steed, J. W. (2000). Inorg. Chim. Acta, 306, 205–210. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Wilkinson, G. (1987). Comprehensive Coordination Chemistry, ch. 16.6, pp. 639–640. Oxford: Pergamon Press. Acta Cryst. (2010). E66, m1368 Acta Cryst. (2010). E66, m1368 doi:10.1107/S1600536810039644 supporting information Giovanna Brancatelli, Dario Drommi, Giuseppe Bruno and Felice Faraone S1. Comment S2. Experimental The compound was prepared by reacting [Rh(COD)(µ-Cl)]2 (0.050 g, 0.10 mmol) with the N,N′-diethylthiourea ligand (0.0264 g, 0.2 mmol) in CH2Cl2 solution at room temperature for 30 min. After evaporation of the solvent in vacuo, the residue was dissolved in dichloromethane. Recrystallization from CH2Cl2/hexane gave orange crystals of the complex. S3. Refinement S3. Refinement S1. Comment 2) between the thioamide N(2) and the Cl(1) A of the neighbor complex molecule generated by applying the crystallographic (x + 1, y, z) symmetry operation. supporting information Acta Cryst. (2010). E66, m1368 [https://doi.org/10.1107/S1600536810039644] Chlorido(η4-cycloocta-1,5-diene)(N,N′-diethylthiourea-κS)rhodium(I) Giovanna Brancatelli, Dario Drommi, Giuseppe Bruno and Felice Faraone Acta Cryst. (2010). E66, m1368 [https://doi.org/10.1107/S1600536810039644] Giovanna Brancatelli, Dario Drommi, Giuseppe Bruno and Felice Faraone Refinement 0 restraints H-atom parameters constrained w = 1/[σ2(Fo2) + (0.0121P)2 + 1.6925P] where P = (Fo2 + 2Fc2)/3 (Δ/σ)max = 0.01 Δρmax = 0.41 e Å−3 Δρmin = −0.35 e Å−3 0 restraints H-atom parameters constrained w = 1/[σ2(Fo2) + (0.0121P)2 + 1.6925P] where P = (Fo2 + 2Fc2)/3 (Δ/σ)max = 0.01 Δρmax = 0.41 e Å−3 Δρmin = −0.35 e Å−3 Refinement on F2 Least-squares matrix: full R[F2 > 2σ(F2)] = 0.016 wR(F2) = 0.042 S = 0.97 2656 reflections 165 parameters S3. Refinement E66, m1368 supporting information 2656 independent reflections 2585 reflections with I > 2σ(I) Rint = 0.015 θmax = 25°, θmin = 3.4° Refinement Refinement on F2 Least-squares matrix: full R[F2 > 2σ(F2)] = 0.016 wR(F2) = 0.042 S = 0.97 2656 reflections 165 parameters Special details Geometry. All s.u.'s (except the s.u. in the dihedral matrix. The cell s.u.'s are taken into account indivi correlations between s.u.'s in cell parameters are on (isotropic) treatment of cell s.u.'s is used for estima Refinement. Refinement of F2 against ALL reflect conventional R-factors R are based on F, with F se only for calculating R-factors(gt) etc. and is not rel are statistically about twice as large as those based Fractional atomic coordinates and isotropic or equ x y C1 0.6141 (3) 0.3714 (2) C2 0.6911 (3) 0.6516 (2) H2A 0.678 0.6272 H2B 0.8245 0.6631 C3 0.6120 (3) 0.8048 (2) H3A 0.6701 0.8867 H3B 0.6381 0.8348 H3C 0.4778 0.7899 C4 0.8012 (3) 0.1765 (2) H4A 0.6878 0.1021 H4B 0.8673 0.1429 C5 0.9280 (3) 0.1800 (3) H5A 0.8697 0.2283 H5B 0.9458 0.0738 H5C 1.0484 0.24 C6 0.1778 (3) 0.4127 (3) H6 0.1543 0.5227 C7 0.0334 (3) 0.3011 (3) H7 −0.0725 0.3469 C8 −0.0210 (3) 0.1390 (3) H8A −0.1559 0.108 H8B 0.0066 0.1461 C9 0.0857 (3) 0.0111 (3) 2656 independent reflections 2585 reflections with I > 2σ(I) Rint = 0.015 θmax = 25°, θmin = 3.4° Refinement Refinement on F2 Least-squares matrix: full R[F2 > 2σ(F2)] = 0.016 wR(F2) = 0.042 S = 0.97 2656 reflections 165 parameters S i l d t il 2656 independent reflections 2585 reflections with I > 2σ(I) Rint = 0.015 θmax = 25°, θmin = 3.4° h = −8→8 k = −10→10 l = −14→14 S3. Refinement Several H atoms were located in a difference Fourier map and placed in idealized positions using the riding-model technique with C—H = 0.93Å and N—H = 0.86Å for aliphatic and thioamide H atoms, respectively. Several H atoms were located in a difference Fourier map and placed in idealized positions using the riding-model technique with C—H = 0.93Å and N—H = 0.86Å for aliphatic and thioamide H atoms, respectively. sup-1 Acta Cryst. (2010). E66, m1368 supporting information pp g Figure 1 ORTEP view of compound (I) showing atomic labeling scheme and displacement ellipsoids at 50% probability for non-H atoms. Figure 1 ORTEP view of compound (I) showing atomic labeling scheme and displacement ellipsoids at 50% probability for non-H Figure 1 ORTEP view of compound (I) showing atomic labeling scheme and displacement ellipsoids at 50% probability for non-H atoms. g ORTEP view of compound (I) showing atomic labeling scheme and displacement ellipsoids at 50% probability for non-H atoms. sup-2 Acta Cryst. (2010). E66, m1368 sup-2 supporting information Figure 2 Figure 2 View of the molecular rows along the a axis generated by N(2)—H(2)···Cl(1) intermolecular interaction. Figure 2 View of the molecular rows along the a axis generated by N(2)—H(2)···Cl(1) intermolecular interaction. Figure 2 View of the molecular rows along the a axis generated by N(2)—H(2)···Cl(1) intermolecular interaction. Chlorido(η4-cycloocta-1,5-diene)(N,N′- diethylthiourea-κS)rhodium(I) Chlorido(η4-cycloocta-1,5-diene)(N,N′- diethylthiourea-κS)rhodium(I) Crystal data [RhCl(C8H12)(C5H12N2S)] Mr = 378.76 Triclinic, P1 Hall symbol: -P 1 a = 7.295 (5) Å b = 8.705 (5) Å c = 12.602 (5) Å α = 101.727 (5)° β = 102.058 (5)° γ = 94.765 (5)° V = 759.7 (7) Å3 Z = 2 F(000) = 388 Dx = 1.656 Mg m−3 Mo Kα radiation, λ = 0.71069 Å Cell parameters from 93 reflections θ = 5.3–22.3° µ = 1.42 mm−1 T = 293 K Plate, orange 0.60 × 0.24 × 0.16 mm Data collection Bruker–Nonius Kappa APEXII CCD diffractometer Graphite monochromator ω scans Absorption correction: multi-scan (SADABS; Bruker, 2001) Tmin = 0.540, Tmax = 0.710 12830 measured reflections Z = 2 F(000) = 388 Dx = 1.656 Mg m−3 Mo Kα radiation, λ = 0.71069 Å Cell parameters from 93 reflections θ = 5.3–22.3° µ = 1.42 mm−1 T = 293 K Plate, orange 0.60 × 0.24 × 0.16 mm Absorption correction: multi-scan (SADABS; Bruker, 2001) Tmin = 0.540, Tmax = 0.710 12830 measured reflections sup-3 sup-3 Acta Cryst. (2010). supporting information pp g H9B 0.0104 −0.0398 0.2578 0.02* C10 0.2795 (3) 0.0767 (2) 0.32166 (18) 0.0133 (4) H10 0.3337 0.0055 0.2693 0.016* C11 0.4153 (3) 0.1802 (3) 0.40867 (18) 0.0146 (4) H11 0.5463 0.1679 0.4052 0.018* C12 0.3872 (3) 0.2309 (3) 0.52713 (18) 0.0189 (5) H12A 0.5085 0.2448 0.5797 0.023* H12B 0.3058 0.1479 0.542 0.023* C13 0.2989 (3) 0.3865 (3) 0.54479 (18) 0.0193 (5) H13A 0.222 0.3849 0.5988 0.023* H13B 0.3993 0.4745 0.5753 0.023* N1 0.5883 (2) 0.52268 (19) 0.16738 (14) 0.0110 (3) H1 0.5065 0.5463 0.2062 0.013* N2 0.7506 (2) 0.3357 (2) 0.08595 (14) 0.0121 (4) H2 0.8134 0.4123 0.0699 0.014* S1 0.47935 (7) 0.22159 (6) 0.17216 (4) 0.01184 (11) Cl1 0.18218 (7) 0.52815 (6) 0.21639 (4) 0.01583 (11) Rh1 0.27945 (2) 0.309577 (18) 0.295374 (13) 0.00866 (6) Atomic displacement parameters (Å2) U11 U22 U33 U12 U13 U23 C1 0.0092 (10) 0.0124 (10) 0.0074 (9) −0.0004 (8) 0.0005 (8) 0.0020 (8) C2 0.0123 (10) 0.0113 (10) 0.0160 (11) −0.0002 (8) 0.0036 (8) 0.0049 (8) C3 0.0151 (11) 0.0120 (10) 0.0190 (11) 0.0001 (8) 0.0026 (9) 0.0041 (9) C4 0.0173 (11) 0.0115 (10) 0.0147 (11) 0.0053 (8) 0.0064 (9) 0.0040 (8) C5 0.0199 (11) 0.0212 (11) 0.0150 (11) 0.0092 (9) 0.0090 (9) 0.0078 (9) C6 0.0155 (11) 0.0165 (11) 0.0138 (11) 0.0033 (9) 0.0081 (9) 0.0004 (9) C7 0.0115 (10) 0.0195 (11) 0.0137 (10) 0.0037 (8) 0.0074 (8) 0.0027 (9) C8 0.0150 (11) 0.0210 (12) 0.0159 (11) −0.0029 (9) 0.0072 (9) 0.0035 (9) C9 0.0195 (11) 0.0161 (11) 0.0148 (11) −0.0030 (9) 0.0067 (9) 0.0048 (9) C10 0.0179 (11) 0.0107 (10) 0.0148 (10) 0.0038 (8) 0.0074 (9) 0.0062 (8) C11 0.0135 (10) 0.0186 (11) 0.0147 (11) 0.0047 (9) 0.0038 (8) 0.0086 (9) C12 0.0196 (11) 0.0260 (12) 0.0100 (10) 0.0004 (9) 0.0007 (9) 0.0055 (9) C13 0.0198 (12) 0.0225 (12) 0.0127 (11) −0.0033 (9) 0.0052 (9) −0.0016 (9) N1 0.0119 (9) 0.0085 (8) 0.0139 (9) 0.0010 (7) 0.0073 (7) 0.0012 (7) N2 0.0140 (9) 0.0088 (8) 0.0160 (9) 0.0013 (7) 0.0076 (7) 0.0046 (7) S1 0.0144 (3) 0.0085 (2) 0.0149 (3) 0.00119 (19) 0.0084 (2) 0.00302 (19) Cl1 0.0110 (2) 0.0151 (3) 0.0245 (3) 0.00368 (19) 0.0050 (2) 0.0100 (2) Rh1 0.00837 (9) 0.00896 (9) 0.00903 (9) 0.00087 (6) 0.00293 (6) 0.00200 (6) G t i t (Å º) H9B 0.0104 −0.0398 0.2578 0.02* C10 0.2795 (3) 0.0767 (2) 0.32166 (18) 0.0133 (4) H10 0.3337 0.0055 0.2693 0.016* C11 0.4153 (3) 0.1802 (3) 0.40867 (18) 0.0146 (4) H11 0.5463 0.1679 0.4052 0.018* C12 0.3872 (3) 0.2309 (3) 0.52713 (18) 0.0189 (5) H12A 0.5085 0.2448 0.5797 0.023* H12B 0.3058 0.1479 0.542 0.023* C13 0.2989 (3) 0.3865 (3) 0.54479 (18) 0.0193 (5) H13A 0.222 0.3849 0.5988 0.023* H13B 0.3993 0.4745 0.5753 0.023* N1 0.5883 (2) 0.52268 (19) 0.16738 (14) 0.0110 (3) H1 0.5065 0.5463 0.2062 0.013* N2 0.7506 (2) 0.3357 (2) 0.08595 (14) 0.0121 (4) H2 0.8134 0.4123 0.0699 0.014* S1 0.47935 (7) 0.22159 (6) 0.17216 (4) 0.01184 (11) Cl1 0.18218 (7) 0.52815 (6) 0.21639 (4) 0.01583 (11) Rh1 0.27945 (2) 0.309577 (18) 0.295374 (13) 0.00866 (6) sup-5 Acta Cryst. Special details Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) x y z Uiso*/Ueq C1 0.6141 (3) 0.3714 (2) 0.14001 (16) 0.0101 (4) C2 0.6911 (3) 0.6516 (2) 0.13529 (18) 0.0130 (4) H2A 0.678 0.6272 0.0552 0.016* H2B 0.8245 0.6631 0.1708 0.016* C3 0.6120 (3) 0.8048 (2) 0.17068 (19) 0.0156 (4) H3A 0.6701 0.8867 0.143 0.023* H3B 0.6381 0.8348 0.2505 0.023* H3C 0.4778 0.7899 0.1409 0.023* C4 0.8012 (3) 0.1765 (2) 0.05213 (18) 0.0137 (4) H4A 0.6878 0.1021 0.0172 0.016* H4B 0.8673 0.1429 0.1169 0.016* C5 0.9280 (3) 0.1800 (3) −0.02977 (18) 0.0170 (5) H5A 0.8697 0.2283 −0.088 0.026* H5B 0.9458 0.0738 −0.0614 0.026* H5C 1.0484 0.24 0.0086 0.026* C6 0.1778 (3) 0.4127 (3) 0.43845 (18) 0.0150 (4) H6 0.1543 0.5227 0.4421 0.018* C7 0.0334 (3) 0.3011 (3) 0.36521 (18) 0.0143 (4) H7 −0.0725 0.3469 0.3272 0.017* C8 −0.0210 (3) 0.1390 (3) 0.38650 (19) 0.0172 (5) H8A −0.1559 0.108 0.3576 0.021* H8B 0.0066 0.1461 0.4662 0.021* C9 0.0857 (3) 0.0111 (3) 0.33158 (18) 0.0165 (4) H9A 0.1004 −0.0689 0.3752 0.02* Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) x y z Uiso*/Ueq l atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) sup-4 Acta Cryst. (2010). E66, m1368 Acta Cryst. (2010). E66, m1368 supporting information (2010). E66, m1368 Cl1 0.18218 (7) 0.52815 (6) 0.21639 (4) 0.01583 (11) Rh1 0.27945 (2) 0.309577 (18) 0.295374 (13) 0.00866 (6) Atomic displacement parameters (Å2) U11 U22 U33 U12 U13 U23 C1 0.0092 (10) 0.0124 (10) 0.0074 (9) −0.0004 (8) 0.0005 (8) 0.0020 (8) C2 0.0123 (10) 0.0113 (10) 0.0160 (11) −0.0002 (8) 0.0036 (8) 0.0049 (8) C3 0.0151 (11) 0.0120 (10) 0.0190 (11) 0.0001 (8) 0.0026 (9) 0.0041 (9) C4 0.0173 (11) 0.0115 (10) 0.0147 (11) 0.0053 (8) 0.0064 (9) 0.0040 (8) C5 0.0199 (11) 0.0212 (11) 0.0150 (11) 0.0092 (9) 0.0090 (9) 0.0078 (9) C6 0.0155 (11) 0.0165 (11) 0.0138 (11) 0.0033 (9) 0.0081 (9) 0.0004 (9) C7 0.0115 (10) 0.0195 (11) 0.0137 (10) 0.0037 (8) 0.0074 (8) 0.0027 (9) C8 0.0150 (11) 0.0210 (12) 0.0159 (11) −0.0029 (9) 0.0072 (9) 0.0035 (9) C9 0.0195 (11) 0.0161 (11) 0.0148 (11) −0.0030 (9) 0.0067 (9) 0.0048 (9) C10 0.0179 (11) 0.0107 (10) 0.0148 (10) 0.0038 (8) 0.0074 (9) 0.0062 (8) C11 0.0135 (10) 0.0186 (11) 0.0147 (11) 0.0047 (9) 0.0038 (8) 0.0086 (9) C12 0.0196 (11) 0.0260 (12) 0.0100 (10) 0.0004 (9) 0.0007 (9) 0.0055 (9) C13 0.0198 (12) 0.0225 (12) 0.0127 (11) −0.0033 (9) 0.0052 (9) −0.0016 (9) N1 0.0119 (9) 0.0085 (8) 0.0139 (9) 0.0010 (7) 0.0073 (7) 0.0012 (7) N2 0.0140 (9) 0.0088 (8) 0.0160 (9) 0.0013 (7) 0.0076 (7) 0.0046 (7) S1 0.0144 (3) 0.0085 (2) 0.0149 (3) 0.00119 (19) 0.0084 (2) 0.00302 (19) Cl1 0.0110 (2) 0.0151 (3) 0.0245 (3) 0.00368 (19) 0.0050 (2) 0.0100 (2) Rh1 0.00837 (9) 0.00896 (9) 0.00903 (9) 0.00087 (6) 0.00293 (6) 0.00200 (6) Geometric parameters (Å, º) C1—N1 1.331 (3) C7—H7 0.98 C1—N2 1.342 (3) C8—C9 1.543 (3) C1—S1 1.732 (2) C8—H8A 0.97 C2—N1 1.469 (3) C8—H8B 0.97 C2—C3 1.518 (3) C9—C10 1.519 (3) Atomic displacement parameters (Å2) Geometric parameters (Å, º) C1—N1 1.331 (3) C7—H7 0.98 C1—N2 1.342 (3) C8—C9 1.543 (3) C1—S1 1.732 (2) C8—H8A 0.97 C2—N1 1.469 (3) C8—H8B 0.97 C2—C3 1.518 (3) C9—C10 1.519 (3) supporting information supporting information supporting information C2—H2A 0.97 C9—H9A 0.97 C2—H2B 0.97 C9—H9B 0.97 C3—H3A 0.96 C10—C11 1.411 (3) C3—H3B 0.96 C10—Rh1 2.120 (2) C3—H3C 0.96 C10—H10 0.98 C4—N2 1.466 (3) C11—C12 1.530 (3) C4—C5 1.526 (3) C11—Rh1 2.130 (2) C4—H4A 0.97 C11—H11 0.98 C4—H4B 0.97 C12—C13 1.543 (3) C5—H5A 0.96 C12—H12A 0.97 C5—H5B 0.96 C12—H12B 0.97 C5—H5C 0.96 C13—H13A 0.97 C6—C7 1.401 (3) C13—H13B 0.97 C6—C13 1.514 (3) N1—H1 0.86 C6—Rh1 2.149 (2) N2—H2 0.86 C6—H6 0.98 S1—Rh1 2.4026 (10) C7—C8 1.525 (3) Cl1—Rh1 2.4111 (11) C7—Rh1 2.160 (2) N1—C1—N2 118.06 (18) C8—C9—H9B 109 N1—C1—S1 122.42 (16) H9A—C9—H9B 107.8 N2—C1—S1 119.52 (16) C11—C10—C9 124.75 (19) N1—C2—C3 109.49 (17) C11—C10—Rh1 71.01 (12) N1—C2—H2A 109.8 C9—C10—Rh1 110.88 (14) C3—C2—H2A 109.8 C11—C10—H10 114.1 N1—C2—H2B 109.8 C9—C10—H10 114.1 C3—C2—H2B 109.8 Rh1—C10—H10 114.1 H2A—C2—H2B 108.2 C10—C11—C12 123.07 (19) C2—C3—H3A 109.5 C10—C11—Rh1 70.20 (12) C2—C3—H3B 109.5 C12—C11—Rh1 114.30 (15) H3A—C3—H3B 109.5 C10—C11—H11 114 C2—C3—H3C 109.5 C12—C11—H11 114 H3A—C3—H3C 109.5 Rh1—C11—H11 114 H3B—C3—H3C 109.5 C11—C12—C13 112.13 (18) N2—C4—C5 108.76 (17) C11—C12—H12A 109.2 N2—C4—H4A 109.9 C13—C12—H12A 109.2 C5—C4—H4A 109.9 C11—C12—H12B 109.2 N2—C4—H4B 109.9 C13—C12—H12B 109.2 C5—C4—H4B 109.9 H12A—C12—H12B 107.9 H4A—C4—H4B 108.3 C6—C13—C12 112.96 (18) C4—C5—H5A 109.5 C6—C13—H13A 109 C4—C5—H5B 109.5 C12—C13—H13A 109 H5A—C5—H5B 109.5 C6—C13—H13B 109 C4—C5—H5C 109.5 C12—C13—H13B 109 H5A—C5—H5C 109.5 H13A—C13—H13B 107.8 H5B—C5—H5C 109.5 C1—N1—C2 123.97 (17) C7—C6—C13 124.7 (2) C1—N1—H1 118 C7—C6—Rh1 71.44 (12) C2—N1—H1 118 Acta Cryst. (2010). E66, m1368 sup-6 supporting information supporting information pp g C13—C6—Rh1 111.45 (15) C1—N2—C4 125.27 (17) C7—C6—H6 113.9 C1—N2—H2 117.4 C13—C6—H6 113.9 C4—N2—H2 117.4 Rh1—C6—H6 113.9 C1—S1—Rh1 115.00 (8) C6—C7—C8 122.7 (2) C10—Rh1—C11 38.78 (8) C6—C7—Rh1 70.61 (12) C10—Rh1—C6 97.75 (8) C8—C7—Rh1 112.66 (14) C11—Rh1—C6 81.39 (9) C6—C7—H7 114.4 C10—Rh1—C7 82.10 (8) C8—C7—H7 114.4 C11—Rh1—C7 90.31 (9) Rh1—C7—H7 114.4 C6—Rh1—C7 37.95 (8) C7—C8—C9 112.29 (17) C10—Rh1—S1 83.28 (6) C7—C8—H8A 109.1 C11—Rh1—S1 89.52 (7) C9—C8—H8A 109.1 C6—Rh1—S1 163.50 (6) C7—C8—H8B 109.1 C7—Rh1—S1 156.79 (6) C9—C8—H8B 109.1 C10—Rh1—Cl1 159.79 (6) H8A—C8—H8B 107.9 C11—Rh1—Cl1 160.89 (6) C10—C9—C8 113.14 (18) C6—Rh1—Cl1 87.71 (7) C10—C9—H9A 109 C7—Rh1—Cl1 90.67 (6) C8—C9—H9A 109 S1—Rh1—Cl1 96.98 (3) C10—C9—H9B 109 C13—C6—C7—C8 1.3 (3) C12—C11—Rh1—C10 −118.3 (2) Rh1—C6—C7—C8 105.03 (19) C10—C11—Rh1—C6 113.96 (14) C13—C6—C7—Rh1 −103.7 (2) C12—C11—Rh1—C6 −4.32 (16) C6—C7—C8—C9 −92.6 (2) C10—C11—Rh1—C7 76.94 (13) Rh1—C7—C8—C9 −11.7 (2) C12—C11—Rh1—C7 −41.35 (16) C7—C8—C9—C10 29.4 (3) C10—C11—Rh1—S1 −79.85 (12) C8—C9—C10—C11 47.8 (3) C12—C11—Rh1—S1 161.87 (15) C8—C9—C10—Rh1 −33.1 (2) C10—C11—Rh1—Cl1 169.87 (14) C9—C10—C11—C12 4.0 (3) C12—C11—Rh1—Cl1 51.6 (3) Rh1—C10—C11—C12 106.7 (2) C7—C6—Rh1—C10 −66.43 (14) C9—C10—C11—Rh1 −102.7 (2) C13—C6—Rh1—C10 54.45 (16) C10—C11—C12—C13 −92.5 (3) C7—C6—Rh1—C11 −101.71 (14) Rh1—C11—C12—C13 −11.1 (2) C13—C6—Rh1—C11 19.17 (15) C7—C6—C13—C12 50.9 (3) C13—C6—Rh1—C7 120.9 (2) Rh1—C6—C13—C12 −30.8 (2) C7—C6—Rh1—S1 −158.94 (17) C11—C12—C13—C6 27.4 (3) C13—C6—Rh1—S1 −38.1 (3) N2—C1—N1—C2 4.4 (3) C7—C6—Rh1—Cl1 94.03 (13) S1—C1—N1—C2 −175.86 (15) C13—C6—Rh1—Cl1 −145.09 (15) C3—C2—N1—C1 174.37 (18) C6—C7—Rh1—C10 113.53 (14) N1—C1—N2—C4 178.38 (18) C8—C7—Rh1—C10 −4.79 (15) S1—C1—N2—C4 −1.3 (3) C6—C7—Rh1—C11 75.50 (14) C5—C4—N2—C1 166.75 (19) C8—C7—Rh1—C11 −42.81 (16) N1—C1—S1—Rh1 −9.74 (19) C8—C7—Rh1—C6 −118.3 (2) N2—C1—S1—Rh1 169.97 (13) C6—C7—Rh1—S1 164.99 (12) C9—C10—Rh1—C11 120.9 (2) C8—C7—Rh1—S1 46.7 (2) C11—C10—Rh1—C6 −65.76 (14) C6—C7—Rh1—Cl1 −85.41 (13) C9—C10—Rh1—C6 55.16 (16) C8—C7—Rh1—Cl1 156.27 (15) sup-7 Acta Cryst. (2010). E66, m1368 supporting information C11—C10—Rh1—C7 −100.44 (14) C1—S1—Rh1—C10 −160.61 (10) C9—C10—Rh1—C7 20.48 (15) C1—S1—Rh1—C11 −122.23 (10) C11—C10—Rh1—S1 97.64 (13) C1—S1—Rh1—C6 −66.0 (2) C9—C10—Rh1—S1 −141.43 (15) C1—S1—Rh1—C7 148.12 (16) C11—C10—Rh1—Cl1 −170.40 (13) C1—S1—Rh1—Cl1 39.75 (8) C9—C10—Rh1—Cl1 −49.5 (3) Hydrogen-bond geometry (Å, º) D—H···A D—H H···A D···A D—H···A N1—H1···Cl1 0.86 2.39 3.152 (3) 148 N2—H2···Cl1i 0.86 2.89 3.356 (3) 116 Symmetry code: (i) x+1, y, z. supporting information C11—C10—Rh1—C7 −100.44 (14) C1—S1—Rh1—C10 −160.61 (10) C9—C10—Rh1—C7 20.48 (15) C1—S1—Rh1—C11 −122.23 (10) C11—C10—Rh1—S1 97.64 (13) C1—S1—Rh1—C6 −66.0 (2) C9—C10—Rh1—S1 −141.43 (15) C1—S1—Rh1—C7 148.12 (16) C11—C10—Rh1—Cl1 −170.40 (13) C1—S1—Rh1—Cl1 39.75 (8) C9—C10—Rh1—Cl1 −49.5 (3) Hydrogen-bond geometry (Å, º) D—H···A D—H H···A D···A D—H···A N1—H1···Cl1 0.86 2.39 3.152 (3) 148 N2—H2···Cl1i 0.86 2.89 3.356 (3) 116 Symmetry code: (i) x+1, y, z. sup-8 sup-8 Acta Cryst. (2010). supporting information E66, m1368
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Stool as a novel biomarker for arsenic exposure through diet: a case-control study in a West Bengal population
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Stool as a novel biomarker for arsenic exposure through diet: a case-control study in a West Bengal population Soma Ghosh Soma Ghosh Research Article License:   This work is licensed under a Creative Commons Attribution 4.0 International License. d ll License:   This work is licensed under a Creative Commons Attribution 4.0 International License. Read Full License Page 1/27 Page 2/27 Abstract Geogenic groundwater arsenic (As) contamination is a persistent health threat in the district of Nadia, West Bengal India. Despite provision of safe piped water, local populations in these areas are still exposed to As through diet as the cultivation is majorly dependent on As contaminated shallow groundwater causing significant As accumulation in agricultural foodstuffs. Although urine is an established biomarker for As exposure through drinking water yet, it does not reflect the actual exposure through diet. Hence, stool-As concentration of exposed population should be evaluated to assess the true exposure through diet. The present case-control study evaluates As concentration in stool samples of exposed (n = 24) and unexposed (n = 36) populations. Average stool-As concentration found was 234 ±  207 µg/kg in exposed population while only 66 ± 22 µg/kg in control samples; comparable to those of urine samples of case and control; respectively. Positive Pearson correlation and a significant difference of variance through ANOVA (p = 0.01; Fcrit= 1.65) among stool-As, urine-As, groundwater-As, age and BMI found for case samples indicate that stool also presents comparable and measurable As concentrations upon exposure. Mann-Whitney U test confirms that random values of stool-As in case samples varied significantly (p < 0.001) than those of control samples. Besides, multi-metal analysis of stool digest indicated that stool-As correlated negatively with most of the metals in case and positively with control samples. These observations along with ease of collection and detection due to higher concentration in the matrix, suggest that stool may act as a decisive biomarker of As exposure through diet. To the best of our knowledge, this is a pioneering study to establish stool as a reliable and significant biomarker for assessing As exposure as limited investigations exist focused on human faecal samples on long term naturally exposed adult human population. 1. Introduction Arsenic (As), classified as a group V toxic metalloid, is recognized as a potent carcinogen, posing various carcinogenic and non-carcinogenic health risks to populations (IARC, 2012). Geogenic As contamination in groundwater has been majorly documented from India, Bangladesh and other South East Asian countries along with few countries of Latin America and Europe as well (Bhowmick et al., 2013; Podgorski and Berg, 2020). Arsenic concentration above 10 µg/L has been considered as an unsafe limit in drinking water by WHO (WHO, 2011). Naturally occurring As in sediments and their continuous mobilization into the aqueous phase causes groundwater contamination in the Ganga Brahmaputra Meghna (GBM) delta plain in India (Bhowmick et al., 2013; Ghosh and Sar, 2019). The dimension of the As devastation caused in West Bengal, India and Bangladesh was so high that WHO (2001) termed it as the “biggest natural As calamity in the world” (Rana et al., 2012). Nine districts covering seventy-five blocks in West Bengal, India, with an As exposed population of 10.9 million people in an area of 38,865 km2, have been reported as severely affected (PHED, 2020). Arsenic exposure through groundwater has been known to be the primary source of exposure in the last three decades (Bhowmick et al., 2018; Chatterjee et al., 2010). However, higher levels of awareness campaigns coupled with installations of As removal technologies in some of the affected areas of West Bengal, have somewhat lessened the impacts of As toxicity. Treated piped Page 3/27 Page 3/27 water has been supplied to the locales in villages of As endemic regions in West Bengal for the last 6–7 y and hence, exposure through drinking of groundwater has been partially minimized (Mazumder et al., 2014). Although several educational and awareness efforts are being taken and provision of treated piped water are being made available in these endemic regions, yet it might be apprehended that not all rural populations drink water from piped water sources, as intended and still partially depend on groundwater for daily consumption. Moreover, this highly contaminated groundwater (As > 50 ug/L) is continuously being used for irrigational purposes and other household activities (such as cooking) (Halder et al., 2014). Crops and cereals growing in the agricultural fields of these endemic regions are loaded with high As concentrations as reported by previous studies (Chowdhury et al., 2018; Rahaman et al., 2022). 1. Introduction Hence, mounting evidences indicate that diet is now considered as another major source of As exposure (Biswas et al., 2021; Chowdhury et al., 2020; Halder et al., 2013). The primary source of As exposure still remains obscure as few studies have reported that drinking As contaminated water could be the major source of exposure despite consuming of As contaminated foodstuffs (Chung et al., 2014; van Geen and Duxbury, 2009). However, other studies have established diet to be the primary source of exposure when As concentration in drinking water is considerably low (Halder et al., 2013; Nachman et al., 2017). Mazumder et al. (2014) documented significant positive correlation of urinary As with daily As intake from water and diet for people consuming water tainting As < 50µg/L. Simultaneously they found no correlation and positive correlation of urinary As with As intake from water and diet, respectively for people consuming water with As below 10 µg/L suggesting that dietary As is a potential pathway of As exposure. Moreover, urinary As showed more significant positive correlation with As exposed people with skin lesion than without skin lesion. Hence, certainly it is indisputable that the exposure to As through dietary sources constitutes a significant route for any given population and thus, reevaluation of the definitive biomarkers for assessing As exposure is highly warranted. Among the established biomarkers, blood As has been known to be reflective of As exposure as it bears a strong correlation with the amount of ingested As (Hall et al., 2006). However, due to extremely low blood As concentrations, difficulty in sample availability and As detection using regular analytical instruments (such as atomic absorption spectrophotometric techniques), short half-life of As in blood and invasive nature of sample collection, makes it a less used biomarker for As-based epidemiological studies. Urinary As has been a very well established biomarker of As as it provides evidence of recent exposure since As is rapidly metabolized and excreted through urine (Buekers et al., 2023; Chung et al., 2014). Besides these markers, human hair and toe nail act as reliable biomarkers for As exposure and micronuclei assay has been considered as a biomarker of effect (Marchiset-Ferlay et al., 2012). 1. Introduction However, given the recurrent establishment of diet as a significant contributor to As exposure, it would be reasonable to assess the excretion of As through human faecal sample to determine whether it can provide more insights into As exposure. The gut microflora is known to harbour trillions of bacteria composed of a very complex community with several of them having As metabolizing abilities which can potentially biotransform the ingested inorganic As through diet (Luo et al., 2023). There have been studies that have shown As excretion through faecal route in animal subjects such as in naturally exposed goat, cow and experimentally exposed mice (Das et al., 2021; Luo et al., 2023; Patra et al., 2012; Rana et al., 2012). Page 4/27 Page 4/27 However, till date no investigation has been performed on human faecal samples on long-term naturally exposed adult human population from As endemic regions to substantiate whether stool may be considered as a critical biomarker even when exposure through drinking water is minimized. However, till date no investigation has been performed on human faecal samples on long-term naturally exposed adult human population from As endemic regions to substantiate whether stool may be considered as a critical biomarker even when exposure through drinking water is minimized. Hence, in the present study, we aimed at determining adult human faecal As concentrations from As endemic and non-endemic regions of West Bengal through a case-control study and evaluated their correlation with several confounding factors for demonstrating human stool as a reliable and decisive biomarker of As exposure. The overarching objective of this study was to assess the viability of fecal matter as a reflective indicator of As intake, especially through diet and serve as a viable means for biomonitoring As exposure. To the best of our knowledge, this represents the first report of adult human fecal As concentration being regarded as a potential and conclusive biomarker for populations exposed to As. 2.2 Experimental Study In this study, 60 subjects (24 subjects from exposed area and 36 from unexposed area) with male and female genders in the age range of 28–60 y were randomly chosen among 150 subjects registered from both endemic and non-endemic zones. Information regarding diet preference, health status and use of any possible antibiotics or other medications was obtained from the questionnaire survey. Height and weight of the subjects were recorded to calculate their BMI. Use of any antibiotic within 15 days was a compulsive exclusion criterion maintained for this study as it could have deleterious effect on the gut microbiome: thus, upsetting As metabolism in the gut (Dahiya and Nigam, 2023). 2.1 Location and plan of sample collection: Nadia and Paschim Medinipore districts of West Bengal, India were chosen as the As endemic and non- endemic area, respectively for the present study based on several survey studies previously reported by our research group (Biswas et al., 2021; Das et al., 2021a; Das et al., 2021b; Joardar et al., 2021; Joardar et al., 2022). In particular, residents of Kadambagachhi, Dakshin Panchpota and Haringhata village of Chakdaha block of Nadia district were considered as cases, while control subjects were from Solatutbar, Kharkushma, Taldanga, Manglapota village of Garhbeta-1 block, Paschim Medinipore. Subject for the present study was recruited by organizing survey health camps at block level with necessary permission from responsible authorities. Each batch of subject recruitment and sample collection was done based on a 3-day programme and was planned as follows: Day1: Field sensitization of the local population with the help of ground level health workers explaining the impacts of long-term effects of As exposure and identifying potentially impacted patients Day 2: Organization of a health camp where participants were diagnosed by experienced physician for As induced skin lesions and registered as cases or controls (without skin lesions). The selection criteria for the study were that the subject must have resided in the area for last 10–15 y, age range between 18–60 y, and preferably one subject from a family. The objective of the study were explained to each of the participants and after obtaining written consent for their voluntary participation, stool collection procedure was verbally demonstrated and the stool collection kit was distributed among the selected subjects. Day 3: The field team visited the residence of each of the selected participants. A short questionnaire survey was conducted and stool and spot urine samples, along with groundwater samples from tubewells were collected from the households. Page 5/27 2.3 Sample collection Registered subjects were provided with a stool collection kit containing a sterile stool collecting vial (Himedia) and a sterilized autoclavable plastic sheet that has to be spread on the toilet floor of the participant on the day of collection. The participants were requested to defaecate on the sterile sheet and collect an aliquot of the stool in the collecting vial, and store it in a dark and cool place. The stored stool samples were collected by the field team from individual residences and immediately stored in iceboxes until transferred to laboratory to be stored at -20oC. Spot urine samples was collected in acid washed polypropylene bottles, and was transported in ice box from field to laboratory and stored at -20oC until analysis. Groundwater from tubewells located inside the participant’s house premises were also collected in acid washed polypropylene bottles and was preserved at 4oC. Both urine and groundwater were acidified in the field with 0.1% HNO3 (pH < 2) (Biswas et al., 2021). 2.6 Statistical analysis The data was statistically interpreted using MS Excel, PAST 3 and online available software https://www.statskingdom.com/170median_mann_whitney.html for Mann-Whitney U test or rank sum test. Descriptive analysis of the data on the basis of gender within case and control samples was performed using Data Analysis package of MS Excel. Correlation, Principal Component Analysis and ANOVA analysis among As concentrations of groundwater, urine and stool samples were performed using PAST 3. 2.5 Quality control and assurance The analytical accuracy and precision of the work was performed by estimating As content in SRM (standard reference material). For the stool samples, the SRM used in this study was River Sediment 1645 (NBS, Washington, DC 20234) and was prepared following the identical procedure as that of the stool samples. Analysis of the SRM showed 99 to 103% recovery against the certified value of 66 mg/kg. Quality control of the work was also performed by careful standardization of instrument, duplicate sample analysis and recovery estimation of spiked digested samples. The detailed information regarding analysis and recovery of As in SRM samples was described in our earlier publications (Chowdhury et al., 2018; Das et al., 2021b). In case of drinking water and urine analysis, drinking water SRM (NIST SRM 1640a) and spiked urine samples were used for quality assurance. The detailed quality control procedure adopted has been described in our previous report (Biswas et al., 2021). 2.4 Sample preparation and As estimation Frozen stool samples were thawed to room temperature and aliquoted on pre-labelled sterile petri-dishes aseptically within a laminar air-flow unit. The sample containing petri dishes were covered and allowed for drying under sunlight to remove the moisture content of the stool samples. The petri plates were exposed to sunlight for 6 hours a day for 5 days continuously and were then sealed with a parafilm to prevent further moisture contamination. The solid dried stool samples were acid digested in hot-plate using HNO3 and H2O2. About 0.1–0.8 g of dried stool samples were mixed in a solution of concentrated HNO3 (69%) and H2O2 (30% v/v) in a ratio of 2:1 and digested at 90° C for 1 h on a hot plate. The volume of acid-digested solution was reduced by evaporating, finally made up to a volume of 4 ml with double distilled water and filtered using a filter paper (Whatman 42) and stored until total As estimation. The detailed information reading the digestion methodology has been described in Joardar et al. (2021). The acid digested stool samples were analyzed for As in Hydride Generation Atomic Absorption Spectrophotometry (HG-AAS). The estimation of As concentration in the stool were performed using the digestion facility and HG-AAS instrument available at School of Environmental Studies, Jadavpur University. The description of HG-AAS instrument and the sample preparation and methodology for As analysis has been detailed in earlier publications (Das et al., 2021a; Joardar et al., 2022). Page 6/27 Acidifed urine and groundwater samples were thawed to room temperature and filter sterilized through 0.2µ PTFE membrane filters (Whatmann). The samples were further diluted and prepared following the methodology mentioned in Biswas et al. (2021) and analysed using inductively coupled plasma mass spectrometry (ICP-MS, Perkin Elmer, NexION 300X) available in CSIR- NEERI, Nagpur. 2.7 Institutional ethical approval The ethics committee of CSIR- National Environmental Engineering Research Institute approved the study under the Ref. No. Eth.Com./002/IEC/EISD/05/2019 dated 07-05-2019. 3.2 Arsenic concentration in urine and stool samples The results obtained in this study indicated that the average As concentration in stool samples of enrolled subjects as case was 234 ± 207 µg/kg whereas those as control was 66 ± 23 µg/kg. Mean urinary As was also found to be approximately 200 fold higher in case i.e. 142 ± 109 µg/L as compared to control i.e. 0.61 ± 0.43 µg/L (Table 1). Figure 1 shows the concentration of As in stool and urine samples collected from each subject enrolled as case or control plotted against the concentration of As in groundwater samples to which they are exposed. Concentration of As detected in stool samples is comparable to that in respective urine samples in majority of the subjects irrespective of their enrolment as case or control. Thus, the low As content in drinking water juxtaposed with the relatively high concentration of urinary As in cases suggests that the populations in As affected areas continue to be exposed to As through diet (Biswas et al., 2021). Categorizing the As levels, our results shows that the mean As concentration in urine of male and female subjects for cases was 145 ± 121 and 139 ± 98 µg/L, respectively and that in stool was 240 ± 222 µg/kg and 226 ± 197 µg/kg, respectively. In case of control, the mean urinary As concentration for male and female subjects were found to be 0.77 ± 0.45 µg/L and 0.58 ± 0.43 µg/L, respectively, whereas, that of stool was found to be 70 ± 25.21 and 65 ± 22 µg/kg, respectively (Table 2). The As concentration in stool and urine of males were found to be consistently higher than that of females, irrespective of level of exposure or the sample investigated. This may be attributed to the higher intake of food and water by males than females. It is interesting to note that the average As concentration in stool and urine for control populations were comparable in both the age group, i.e. 71 ± 25 µg/kg and 57 ± 13 µg/kg for control stool samples and 0.58 ± 0.45 µg/L and 0.68 ± 0.42 µg/L for control urine samples. 3.1 Demographic details: A total of 24 subjects from case and 36 subjects from control were selected randomly among 150 subjects. The basic characteristics of the study population are shown in Table 1. Cases comprised of 13 males and 11 female members whereas, control subjects included 7 male and 29 female subjects. The majority i.e. 88% of the members of cases was within normal BMI range and the remaining (12%) had BMI below 18. None of the cases showed BMI above 25. Among the control subjects, 58% showed BMI within 18–25, 14% below 18 and around 28% of them had BMI above 25. Although groundwater of the Page 7/27 exposed area was found to be highly contaminated with As with average As concentration of 154.68 µg/L, while sampling it could be noted that the usage of such groundwater by the participants was occasional and the villagers mostly relied upon piped water for drinking purposes. The average concentration of As found in water samples collected from control sites was 1.61 µg/L (Table 1). The subjects among case and control were divided into age range of 28–44 y and 45–60 y. The number of subjects enrolled as control in the age group 28–44 y was 23 and 45–60 y was 13; whereas case subjects counted 8 and 16 in the same age group, respectively (Table 2). 3.2 Arsenic concentration in urine and stool samples On the contrary, average As concentration in the biological specimen of exposed populations was found to be considerably high in the older age range of 45–60 y i.e 266 ± 237 µg/kg and 168 ± 149 µg/L in stool and urine samples, respectively as compared to that of the age range 28–44 y i.e. 171 ± 118 µg/kg and 91 ± 59 µg/L, respectively (Table 2). This can be attributed to the higher education levels and increased As awareness among the younger populations compared to older individuals who exhibit a greater propensity towards habitual use of As tainted water for both drinking and cooking purposes. Pearson correlation analysis among various parameters such as As concentration of stool, urine and groundwater with age and BMI indicated a positive correlation of stool As with urinary As (r = 0.52); Page 8/27 Page 8/27 groundwater As (r = 0.19); age (r = 0.18) and BMI (r = 0.24) for exposed populations (Table 3). However, for control samples, only groundwater As concentration showed positive correlation (r = 0.25) with stool As concentration whereas, no correlation could be established for stool As concentration with urinary As (r =  0.00), and a negative correlation with age (r= -0.27) and BMI (r= -0.27) were found. A two-way ANOVA was performed to compare the effect of stool As concentration as the dependent variable and, urinary and groundwater As concentration along with age and BMI as the independent variables for both case (n = 24) and control (n = 36). An ANOVA test for the parameters (i.e stool As, urinary As, groundwater As, age and BMI) tested for case and control populations showed a P value of 0.00 with Fcrit= 2.47 and 2.44, respectively at α = 0.05, indicating that there is a statistically significant difference between stool As concentration and urinary As, groundwater As, age and BMI for both case and control samples. Notably, significant difference was found among the members of the case group when the individual stool, urine, groundwater As and age and BMI were compared statistically through a two-way ANOVA (p = 0.01; Fcrit= 1.65); however no such significant difference exists in the control group (p = 0.93, Fcrit= 1.51) (Table 3). Mann-Whitney U test was also performed with the stool As concentration of both case and control subjects including the outlier values (Table 4). 3.2 Arsenic concentration in urine and stool samples The P- value was found to be < 0.001 which clearly suggested that the randomly selected value for the case population was significantly different compared to the randomly selected value of the control population. The median stool As value for the case population was 173 µg/kg whereas, that for control population was 63 µg/kg. The standardized effect size is 0.51 which is considered to be large and indicates that the magnitude of difference between case and control is large. The observed common language effect size is 0.81 which indicates that the probability of stool As value for case is greater than that of a control population (Bilici et al., 2021). Thus, the Mann-Whitney U test and the two-way ANOVA test proves significant differences in the As concentration levels of stool samples for populations from As endemic and non-endemic areas, respectively. Such results along with significant correlation of urinary and stool As for cases implies that population exposed to As have higher As levels in their excreted stool and thus, can be a reflection of an individual As exposure. 3.3 Multi-metal analysis of stool digested samples On the contrary, As had a little positive impact on the major component for control samples, respectively. For control subjects, Fe along with Zn and Cu were the strongest regulators of the major component of PCA. This clearly shows that As in stool digests of cases is significantly different from that of control. 3.3 Multi-metal analysis of stool digested samples Multi-metal estimation for Cu, Cr, Zn, Pb, Cd, Ni, Fe, and As (case = 22 and control = 36) detected available concentrations of these heavy metals in the stool digest samples through ICP-OES. Average concentration of Cu, Cr, Zn, Pb, Cd, Ni and Fe were found to be 9.61 ± 6.78, 1.08 ± 0.80, 63.84 ± 34.96, 0.37  ± 0.38, 0.14 ± 0.14, 2.60 ± 1.62 and 105.10 ± 80.18 mg/kg, respectively for control samples whereas, 6.57  ± 2.88, 0.8 ± 0.45, 28.09 ± 14.73, 0.04 ± 0.25, 0.04 ± 0.04, 0.72 ± 0.38, 87.97 ± 81.22 mg/kg, respectively, in case samples (Table 5). Pearson correlation analysis among the multi-metals detected in stool digest samples of case and control i.e. Cu, Cr, Zn, Pb, Cd, Ni, Fe and As indicated that As bears the minimum correlation with other heavy metals detected both in case and control subjects. However, the correlation is found to be mostly Page 9/27 Page 9/27 negative in case samples and weakly positive for control samples, except for Cd (rcase = 0.07 and rcontrol = -0.05), respectively (Fig. 2). Among other metals, a strong positive correlation was found for Cu with Cr (r  = 0.61), Zn (r = 0.67), Ni (r = 0.65); Cr with Fe (r = 0.82) and Zn with Ni (r = 0.77). Other metals showed a weak to moderately positive correlation among themselves with r values ranging within 0.14–0.51. In control subjects, correlation was found to be strongly positive for Cu with Zn (r = 0.96), Cd (r = 0.73), Ni (r  = 0.84), Fe (r = 0.79); Zn with Cd (r = 0.71), Ni (r = 0.83), Fe (r = 0.75) and Cd with Ni (r = 0.73). Correlations among rest of the metals was found to be moderately to weakly positive with r in the range of 0.12–0.54. Principal component analysis (Fig. 3) of the multi-metal concentrations of the stool digested samples were performed for both case and control samples. The plot explains a variance of 96.75% in case subjects and 90.602% in control subjects with a maximum positive and negative variance of Zn and Fe, respectively, with respect to component 1 in both case and control subjects. However, for case subjects, variance of both Zn and Fe with respect to As concentration was found to be highly reduced as compared to control samples. 3.3 Multi-metal analysis of stool digested samples The loadings plot based on correlation for case/ exposed subjects revealed a negative impact of As and Pb on the major component of PCA whereas, Cu, Cr, Zn, Pb, Cd, Ni and Fe had a positive impact. In case of exposed subjects, Fe and Cr are the strongest positive contributors of the major component. On the contrary, As had a little positive impact on the major component for control samples, respectively. For control subjects, Fe along with Zn and Cu were the strongest regulators of the major component of PCA. This clearly shows that As in stool digests of cases is significantly different from that of control. negative in case samples and weakly positive for control samples, except for Cd (rcase = 0.07 and rcontrol = -0.05), respectively (Fig. 2). Among other metals, a strong positive correlation was found for Cu with Cr (r  = 0.61), Zn (r = 0.67), Ni (r = 0.65); Cr with Fe (r = 0.82) and Zn with Ni (r = 0.77). Other metals showed a weak to moderately positive correlation among themselves with r values ranging within 0.14–0.51. In control subjects, correlation was found to be strongly positive for Cu with Zn (r = 0.96), Cd (r = 0.73), Ni (r  = 0.84), Fe (r = 0.79); Zn with Cd (r = 0.71), Ni (r = 0.83), Fe (r = 0.75) and Cd with Ni (r = 0.73). Correlations among rest of the metals was found to be moderately to weakly positive with r in the range of 0.12–0.54. Principal component analysis (Fig. 3) of the multi-metal concentrations of the stool digested samples were performed for both case and control samples. The plot explains a variance of 96.75% in case subjects and 90.602% in control subjects with a maximum positive and negative variance of Zn and Fe, respectively, with respect to component 1 in both case and control subjects. However, for case subjects, variance of both Zn and Fe with respect to As concentration was found to be highly reduced as compared to control samples. The loadings plot based on correlation for case/ exposed subjects revealed a negative impact of As and Pb on the major component of PCA whereas, Cu, Cr, Zn, Pb, Cd, Ni and Fe had a positive impact. In case of exposed subjects, Fe and Cr are the strongest positive contributors of the major component. 4. Discussion Hair and nails have also been used as biomarkers of past As exposure as adsorbed As accumulates in such keratin-rich biological tissues and also, because of having an added advantage of non-invasive collection process (Katz, 2019; Rasheed et al., 2019; Rehman et al., 2019; Signes-Pastor et al., 2021). The present study has been performed with an aim to investigate whether human stool may act as a reliable biomarker for As exposure, especially through diet. For this, subjects from district of Nadia were considered as case and Medinipore as control based on the observations of Mondal et al., 2010 who documented higher As exposure through cooked rice in the districts of Nadia (0.50 µg/kg/d) and Murshidabad (0.84 µg/kg/d) as compared to less or negative exposure in Medinipore (0.30 µg/kg/d). We also calculated a tentative ADD and HQ for population of Nadia and Murshidabad based on the previous observations by our group Biswas et al., 2021 and obtained an average HQ of 2.23 and 0.38, respectively (Supplementary Table 1). This observation is corroborated by Joardar et al., 2023 who also found an HQ  > 1 in the exposed population of Gaighata. An HQ of less than 1 is considered to be acceptable (Bleam, 2016). Hence, the HQ for exposed population is much higher than the acceptable limit which establishes the fact that the case population is severely exposed to As through diet. Hence, considering stool besides urine as a biomarker of As exposure needs attention. Arsenic exposure through contaminated groundwater in Nadia district of West Bengal, India has already been well studied and documented (Bhowmick et al., 2018). As a precautionary measure, most of the villages has been provided with As free piped water since last 5–8 y. Piped water in these areas have been reported to have As concentrations in the range of 0.2 µg/L to 8.3 µg/L, which is far below the WHO permissible limit i.e 10 µg/L (Biswas et al., 2021). Hence, acute exposure through groundwater has been minimized however, the local people continue to use groundwater for cooking and other daily household purposes (Halder et al., 2014; Biswas et al., 2021). As a result, a complex scenario has now been shaped where the population is still exposed to As but through diet. There has been several studies that have documented elevated concentrations of As in local food stuff, such as rice, pulses, vegetables etc. 4. Discussion More than 200 million people in 108 countries worldwide are at risk of As poisoning mostly through groundwater contamination (Shaji et al., 2021). Among the Asian nations, India has experienced the greatest impact of As crisis, with a population exceeding 70.4 million people facing the risk of As poisoning (Chakraborti et al., 2016). Apart from groundwater, entry of As into the food chain also poses a significant risk to humans and ecological systems (Chen et al., 2009; Biswas et al., 2021; Halder et al., 2013). Groundwater As contamination in the state of West Bengal in India has been investigated by several researchers and an estimated 26 million people could be at risk of As toxicity (Chakraborty et al., 2009; Bhowmick et al., 2018). Various biomarkers have been used to assess As exposure in the humans. Among the biomarkers of exposure, effect and susceptibility, biomarkers of exposure have received the maximum amount of attention (Marchiset-Ferlay et al., 2012). Despite having a short half-life of 39–59 hours (Buchet et al., 1981), urinary As is most commonly used as a biomarker of exposure as it correlates positively with As intake in exposed populations (Takamaya et al., 2021; Wang et al., 2017; Wei et al., 2017; Zhang et al., 2020; Rasheed et al., 2019) (Calderon et al., 1999; Hopenhayn-Rich et al. 1996; Buekers et al., 2023). Blood As is not regarded as a reliable biomarker of As exposure as it is cleared from the blood stream within a few hours after its absorption (Marchiset-Ferlay et al., 2012) and generally has a poor relationship with low As exposure levels (WHO, 2001). Furthermore, blood poses challenges as a matrix Page 10/27 Page 10/27 for analysis compared to urine, and the collection of blood samples is intricate and invasive in nature. Hair and nails have also been used as biomarkers of past As exposure as adsorbed As accumulates in such keratin-rich biological tissues and also, because of having an added advantage of non-invasive collection process (Katz, 2019; Rasheed et al., 2019; Rehman et al., 2019; Signes-Pastor et al., 2021). Significant correlations have been found between As levels in drinking water and hair and nail species in population-based studies (Rasheed et al., 2019; Kumar et al., 2021; Rivera-Núñez et al., 2012; Normandin et al., 2014). 4. Discussion However, a major deterrent for using hair and nails as biomarkers is both these biological specimens have the tendency to accumulate and adsorb As from external sources (Hindmarsh, 2002) and thus, it might complicate the exposure analysis. Although there have also been studies that have reported salivary As as a biomarker of As exposure (Bhowmick et al., 2013; 2014); the low As concentration in saliva has mostly hindered the widespread use of this biological fluid for As epidemiological studies. Till date, there has only been a handful studies in humans that have reported As eliminated through the faecal route in normal individuals (Mohri et al., 1990). Studies by Bettley and O’Shea (1975) and Pomroy et al. (1980) also measured As eliminated through both urine and faeces after administration of As compounds in human subjects with arsenical carcinoma and healthy volunteers. for analysis compared to urine, and the collection of blood samples is intricate and invasive in nature. Hair and nails have also been used as biomarkers of past As exposure as adsorbed As accumulates in such keratin-rich biological tissues and also, because of having an added advantage of non-invasive collection process (Katz, 2019; Rasheed et al., 2019; Rehman et al., 2019; Signes-Pastor et al., 2021). Significant correlations have been found between As levels in drinking water and hair and nail species in population-based studies (Rasheed et al., 2019; Kumar et al., 2021; Rivera-Núñez et al., 2012; Normandin et al., 2014). However, a major deterrent for using hair and nails as biomarkers is both these biological specimens have the tendency to accumulate and adsorb As from external sources (Hindmarsh, 2002) and thus, it might complicate the exposure analysis. Although there have also been studies that have reported salivary As as a biomarker of As exposure (Bhowmick et al., 2013; 2014); the low As concentration in saliva has mostly hindered the widespread use of this biological fluid for As epidemiological studies. Till date, there has only been a handful studies in humans that have reported As eliminated through the faecal route in normal individuals (Mohri et al., 1990). Studies by Bettley and O’Shea (1975) and Pomroy et al. (1980) also measured As eliminated through both urine and faeces after administration of As compounds in human subjects with arsenical carcinoma and healthy volunteers. for analysis compared to urine, and the collection of blood samples is intricate and invasive in nature. 4. Discussion However, recently few studies have reported significant As concentrations in excreted faeces of children suggesting faecal matter could be one of the important excretion route of dietary As (Bilici et al., 2021; Vega Millan et al., 2021). Till date, the scientific investigation for As in human stool is still very few although stool could be an important excretion route for several environmental contaminants (Astolfi et al., 2019; Bilici et al., 2021; Hardy et al., 2023; States et al., 2011; Yi et al., 2020). As for example, Bilici et al. (2021) have reported decisive levels of As in blood and stool samples of children with functional gastrointestinal disorder. Karagas et al. (2022) found increased levels of butyrate, propionate, cholate, tryptophan, asparagine, isoleucine, leucine, malonate, and uracil concentrations in infant fecal samples with doubling of urinary As concentrations. foodstuffs in their studied population in Nadia district, West Bengal. The study further demonstrated As exposure by assessing As concentration in urine (ranging between 154 and 276 µg/L), and an overall As retention of 50–60% was predicted. Our study reports an average of 142 µg/L of urinary As in the case or exposed population and 0.61 µg/L of urinary As in control or unexposed population which corroborates well with previous reports from similar study area (Biswas et al., 2021; Joardar et al., 2021). A case- control study by Guha Mazumdar et al. (2012) reported similar findings with 119.4 µg/L of urinary As in As exposed populations from Nadia district and 16.71 µg/L in unexposed populations of Hooghly district of West Bengal. In another study, Vega Millan et al. (2021) reported an elevated urinary As in children of three Yaqui villages of Sonora, Mexico with average concentration of 79.39 µg/L and found close associations with altered levels of biomarkers of lung inflammation and negative respiratory outcomes of serum levels of club cell secretory protein (CC16) and an increase in the expression of matrix metalloproteinase-9 (MMP-9). However, our investigation regarding excretion of As in human adults through faecal route revealed an average faecal As concentration of 233.96 ± 207.02 µg/kg for case and 65.9 ± 22.45 µg/kg in control subjects, which has not been reported earlier. Our data corroborates with the values of As concentration obtained for goat faecal samples (1.283 ± 0.323 mg/kg; n = 30) exposed to As through drinking water, rice and grass as reported by Rana et al. (2012). 4. Discussion Our data corroborates with the values of As concentration obtained for goat faecal samples (1.283 ± 0.323 mg/kg; n = 30) exposed to As through drinking water, rice and grass as reported by Rana et al. (2012). Urine has long been established as a biomarker for acute As exposure (Choi et al., 2022; Marchiset-Ferlay et al., 2012; WHO 2005). However, recently few studies have reported significant As concentrations in excreted faeces of children suggesting faecal matter could be one of the important excretion route of dietary As (Bilici et al., 2021; V Mill l 2021) Till d h i ifi i i i f A i h l i ill f However, recently few studies have reported significant As concentrations in excreted faeces of children suggesting faecal matter could be one of the important excretion route of dietary As (Bilici et al., 2021; Vega Millan et al., 2021). Till date, the scientific investigation for As in human stool is still very few although stool could be an important excretion route for several environmental contaminants (Astolfi et al., 2019; Bilici et al., 2021; Hardy et al., 2023; States et al., 2011; Yi et al., 2020). As for example, Bilici et al. (2021) have reported decisive levels of As in blood and stool samples of children with functional gastrointestinal disorder. Karagas et al. (2022) found increased levels of butyrate, propionate, cholate, tryptophan, asparagine, isoleucine, leucine, malonate, and uracil concentrations in infant fecal samples with doubling of urinary As concentrations. In this study, As level in both urine and stool samples were measured in As exposed and un-exposed populations. We found higher stool As concentration in exposed population (233.96 ± 207.02 µg/kg) compared to that of control (65.9 ± 22.45 µg/kg). Similarly, the mean urinary As concentration for the exposed group (142.43 ± 108.6 µg/L) was also higher than the control subjects (0.61 ± 0.43 µg/L). Our data shows notable correlations among stool As, urinary As and groundwater As. Like urinary As, stool As concentration also correlated positively with groundwater As concentrations in both case and control samples with r = 0.19 and 0.25, respectively. However, urinary As correlated more strongly to groundwater As than stool As in case samples. This may be due to the fact that urine majorly represents As exposure through water while stool represents that through diet. However, significant correlation between urinary and stool As i.e. 4. Discussion (Biswas et al., 2021; Biswas et al., 2012; Mondal et al., 2021; Rana et al., 2012; Samal et al., 2011). Samal et al. (2011) reported a total intake of 560 µg of As day− 1 by adults and 393 µg day− 1 by children from (Biswas et al., 2021; Biswas et al., 2012; Mondal et al., 2021; Rana et al., 2012; Samal et al., 2011). Samal et al. (2011) reported a total intake of 560 µg of As day− 1 by adults and 393 µg day− 1 by children from Page 11/27 Page 11/27 foodstuffs in their studied population in Nadia district, West Bengal. The study further demonstrated As exposure by assessing As concentration in urine (ranging between 154 and 276 µg/L), and an overall As retention of 50–60% was predicted. Our study reports an average of 142 µg/L of urinary As in the case or exposed population and 0.61 µg/L of urinary As in control or unexposed population which corroborates well with previous reports from similar study area (Biswas et al., 2021; Joardar et al., 2021). A case- control study by Guha Mazumdar et al. (2012) reported similar findings with 119.4 µg/L of urinary As in As exposed populations from Nadia district and 16.71 µg/L in unexposed populations of Hooghly district of West Bengal. In another study, Vega Millan et al. (2021) reported an elevated urinary As in children of three Yaqui villages of Sonora, Mexico with average concentration of 79.39 µg/L and found close associations with altered levels of biomarkers of lung inflammation and negative respiratory outcomes of serum levels of club cell secretory protein (CC16) and an increase in the expression of matrix metalloproteinase-9 (MMP-9). However, our investigation regarding excretion of As in human adults through faecal route revealed an average faecal As concentration of 233.96 ± 207.02 µg/kg for case and 65.9 ± 22.45 µg/kg in control subjects, which has not been reported earlier. Our data corroborates with the values of As concentration obtained for goat faecal samples (1.283 ± 0.323 mg/kg; n = 30) exposed to As through drinking water, rice and grass as reported by Rana et al. (2012). Urine has long been established as a biomarker for acute As exposure (Choi et al., 2022; Marchiset-Ferlay et al., 2012; WHO 2005). 4. Discussion Urine has long been established as a biomarker for acute As exposure (Choi et al., 2022; Marchiset-Ferlay et al., 2012; WHO 2005). However, recently few studies have reported significant As concentrations in excreted faeces of children suggesting faecal matter could be one of the important excretion route of dietary As (Bilici et al., 2021; Vega Millan et al., 2021). Till date, the scientific investigation for As in human stool is still very few although stool could be an important excretion route for several environmental contaminants (Astolfi et al., 2019; Bilici et al., 2021; Hardy et al., 2023; States et al., 2011; Yi et al., 2020). As for example, Bilici et al. (2021) have reported decisive levels of As in blood and stool samples of children with functional gastrointestinal disorder. Karagas et al. (2022) found increased levels of butyrate, propionate, cholate, tryptophan, asparagine, isoleucine, leucine, malonate, and uracil concentrations in infant fecal samples with doubling of urinary As concentrations. exposure by assessing As concentration in urine (ranging between 154 and 276 µg/L), and an overall As retention of 50–60% was predicted. Our study reports an average of 142 µg/L of urinary As in the case or exposed population and 0.61 µg/L of urinary As in control or unexposed population which corroborates well with previous reports from similar study area (Biswas et al., 2021; Joardar et al., 2021). A case- control study by Guha Mazumdar et al. (2012) reported similar findings with 119.4 µg/L of urinary As in As exposed populations from Nadia district and 16.71 µg/L in unexposed populations of Hooghly district of West Bengal. In another study, Vega Millan et al. (2021) reported an elevated urinary As in children of three Yaqui villages of Sonora, Mexico with average concentration of 79.39 µg/L and found close associations with altered levels of biomarkers of lung inflammation and negative respiratory outcomes of serum levels of club cell secretory protein (CC16) and an increase in the expression of matrix metalloproteinase-9 (MMP-9). However, our investigation regarding excretion of As in human adults through faecal route revealed an average faecal As concentration of 233.96 ± 207.02 µg/kg for case and 65.9 ± 22.45 µg/kg in control subjects, which has not been reported earlier. 4. Discussion r = 0.52 in exposed group establishes the fact that similar to urine, stool can also behave as biomarkers of As exposure. The present study is one of the first investigations on faecal As concentration of human adult populations with long history of As exposure and continuous intake of As through diet. However, it must be noted that there is variation in the amount of As excreted through urine concentration of human adult populations with long history of As exposure and continuous intake of As through diet. However, it must be noted that there is variation in the amount of As excreted through urine Page 12/27 Page 12/27 and stool. The maximum average volume of daily stool and urine in human adult is 250 g and 1.7 l, respectively (Haarst et al., 2004; Britannica, 2023). Hence, considering the average data of exposed subjects, an average of 58.5 µg of As is excreted through stool per day as compared to 241.4 µg of As excreted through urine per day in an exposed adult. This well corroborates with previous studies where authors found that a higher percentage is excreted through urine than through faeces (Pomroy et al., 1979). Nevertheless, Mohri et al. (1990) detected fairly high proportion of excreted As through feces in male. In this context, the critical factor lies in the concentration of As present in both of these biomarkers. Stool exhibits a higher concentration of As compared to urine, which may offer analytical advantages for assessing As levels. Moreover, Das et al., 2023 reported that the most significant factor regulating health risk is ‘concentration of As’ which will be better assessed by analyzing As concentration in stool matrix as it presents higher concentration than all other biomarkers. However, the challenges associated with the digestion of solid stool for measurement should not be overlooked. Statistical analysis through a two-way ANOVA for stool As and urinary As with groundwater As, age and BMI individually revealed similar observations. No significant difference in variance of control or unexposed subjects could be obtained for both stool As as well as urinary As with respect to other parameters with pstool= 0.93 and purine= 0.82. However, exposed subjects in the case group indicated statistically significant differences in the variances of stool and urinary As with respect other observed parameters with pstool= 0.01 and purine= 0.02. 4. Discussion Besides, Pearson correlation indicated that age and BMI may play an important role in releasing of As through stool in exposed group as it correlated negatively with stool As. Gender and age has already been proved to behave as major factors influencing As metabolism in As exposed Bangladeshi population with an urinary As concentration in the range of 0.5– 1994 µg/L; and a median value of 77 µg/L. Recently Das et. al. (2023) reported that As deposition in biomarkers such as hair, nail and urine appeared to be dependent on age; and independent of sex although, women in their childbearing age were found to bear higher As methylation capacity than men suggesting the role of sex hormones in inorganic As metabolism (Lindberg et al., 2008). No scientific data could be retrieved for role of BMI as a factor for release of As in stool. Nevertheless, BMI has been found to be one of the crucial factor in inorganic As metabolism on an additive scale (Hudgens et al., 2016; Zhang et al., 2020). Women with higher BMI showed higher rates of As methylation in a study on Bangladeshi adults and adolescents (Abuawad et al., 2021). The underlying mechanism of enhanced rates of methylation in women with higher BMI is that body fat influences estrogen levels which in turn enhances choline synthesis. Choline, thus formed, can act as a methyl donor increasing As methylation rates. Moreover, results from the Mann-Whitney U test also confirms that the random values of stool As of exposed populations were greater than that of unexposed population. This finding also corroborated with Mann-Whitney U- test for urinary As of case and control where a random value of case was not equal to that of control. Mann–Whitney U test is considered to be an appropriate analysis for our data as it is the true nonparametric counterpart of the t-test which estimates the significance almost accurately, especially when sample sizes are small and/or when the data is not normally distributed (Smalheiser 2017). Urinary As has already been established as a biomarker of exposure as discussed above. Hence, similar trend of variations and statistical correlations and significance of stool As with that of urinary As, especially when sample sizes are small and/or when the data is not normally distributed (Smalheiser 2017). Urinary As has already been established as a biomarker of exposure as discussed above. 4. Discussion Hence, similar trend of variations and statistical correlations and significance of stool As with that of urinary As, Page 13/27 Page 13/27 especially in case of exposed subjects, make it obvious that stool can also be considered as a reliable biomarker of As especially when exposure is through diet. We also performed multi-metal analysis for the collected stool samples to understand the correlation of presence of As along with other heavy metals in stool samples. Pearson’s correlation of stool As with the other heavy metals showed a negative correlation except for Cd in case subjects. However, for control subjects, the correlation values of metals analysed was completely opposite to that of As where, As showed a positive correlation with all other metals except Cd with a negative correlation. This was also evident from the PCA analysis where the loadings plot clearly indicates that As and Pb has a negative or opposite impact on the component in case of exposed subjects whereas, in unexposed subjects As has a little positive impact on the component. However, it must be noted that the loadings plot does not show direct correlation of the variables but, actually reflects the variable that impacts the component maximally. However, multi-metal analysis of the stool digest samples and their correlation analysis clearly indicates that concentration of As along with Cd is a notable factor in exposed/case samples which is not true for unexposed/control samples. It is a well documented fact that people residing in Nadia and adjacent North 24 Paraganas are unavoidably exposed to As and Cd through their diet with As and/or contaminated rice grown in their own fields being their staple food (Biswas et al., 2023, Roychowdhury et al., 2018). Hence, stool As concentrations can be actually reflective of As exposure through diet. Not much literature is available on heavy metal excretion through fecal route, however a recent study by Ruth and Frances (2022) on young women fed with different iron concentrations found that the absorption for the intakes lay between 18 and 25% and the value for gastrointestinal iron in faeces lay between 0.12 and 0.27 mg. Thus, there is an immense gap in our understanding whether faecal samples can be considered as reliable biomarker for heavy metal exposure. 4. Discussion Hence, to understand the excretion of heavy metals through faecal route, an in-depth study is needed with a larger exposed populations to various heavy metals individually or in groups at varying doses to obtain statistically significant result. 5. Conclusion In conclusion, despite the provision of As free piped water in most of the As endemic villages of West Bengal, populations in these areas are still exposed to As through food chain which can be easily assessed through analysis of faecal samples. The As content of urine samples indicate both exposure from water as well as diet. However, As content in faecal matter is truly indicative of As exposure through diet. The present study proves the significance of stool As in case samples through several statistical analysis which establishes that stool As may play a distinguishing or characterising factor for exposed population. Hence, stool can be considered as a reliable and decisive biomarker for As exposure through diet. All the authors declare that they do not have any competing interests to disclose All the authors declare that they do not have any competing interests to disclose 4. Discussion Hence, to understand the excretion of heavy metals through faecal route, an in-depth study is needed with a larger exposed populations to various heavy metals individually or in groups at varying doses to obtain statistically We also performed multi-metal analysis for the collected stool samples to understand the correlation of presence of As along with other heavy metals in stool samples. Pearson’s correlation of stool As with the other heavy metals showed a negative correlation except for Cd in case subjects. However, for control subjects, the correlation values of metals analysed was completely opposite to that of As where, As showed a positive correlation with all other metals except Cd with a negative correlation. This was also evident from the PCA analysis where the loadings plot clearly indicates that As and Pb has a negative or opposite impact on the component in case of exposed subjects whereas, in unexposed subjects As has a little positive impact on the component. However, it must be noted that the loadings plot does not show direct correlation of the variables but, actually reflects the variable that impacts the component maximally. However, multi-metal analysis of the stool digest samples and their correlation analysis clearly indicates that concentration of As along with Cd is a notable factor in exposed/case samples which is not true for unexposed/control samples. It is a well documented fact that people residing in Nadia and adjacent North 24 Paraganas are unavoidably exposed to As and Cd through their diet with As and/or contaminated rice grown in their own fields being their staple food (Biswas et al., 2023, Roychowdhury et al., 2018). Hence, stool As concentrations can be actually reflective of As exposure Roychowdhury et al., 2018). Hence, stool As concentrations can be actually reflective of As exposure through diet. Not much literature is available on heavy metal excretion through fecal route, however a recent study by Ruth and Frances (2022) on young women fed with different iron concentrations found that the absorption for the intakes lay between 18 and 25% and the value for gastrointestinal iron in faeces lay between 0.12 and 0.27 mg. Thus, there is an immense gap in our understanding whether faecal samples can be considered as reliable biomarker for heavy metal exposure. Author contribution Soma Ghosh: Conceptualization; Data curation; Formal analysis; Funding acquisition; Investigation; Methodology; Project administration; Resources; Validation; Visualization; original draft; review & editing., Manuscript preparation and compilation, Arijit Chakraborty: Data curation, Formal analysis; Investigation; Methodology; Subhamoy Bhowmick: Data curation; Formal analysis; Investigation; Methodology; Resources; Validation; review & editing Antara Das, Madhurima Joardar and Tarit Roy Chowdhury: Formal analysis; Investigation; Methodology; Manuscript preparation;  review & editing Sangeeta Bhunia: Methodology, Kunal Kanti Majumdar: Data curation; Project administration; review & editing Sreemanta Pramanik: Data curation; Project administration; review & editing; Manuscript preparation and compilation Acknowledgements Financial support from the Department of Biotechnology, Government of India (Project No. BT/PR31826BIC/101/1211/2019) is sincerely acknowledged. Financial support from the Department of Biotechnology, Government of India (Project No. BT/PR25850/BCE/8/1423/2017) is also acknowledged. KRC, CSIR-NEERI is duly acknowledged for checking the manuscript through the anti-plagiarism software, iThenticate (KRC No: CSIR-NEERI/KRC/2024/ JAN/KZC/3). We would like to express our gratitude to Director, CSIR-NEERI for giving the necessary permission to carry out the research. We are grateful to all the participants for their support and giving time for this study and providing us with the necessary samples. All the authors declare that they do not have any competing interests to disclose Page 14/27 Page 14/27 Data availability statement Associate data have been provided as electronic supplementary file. Further data can be provided upon request. References 1. Abuawad, A., Spratlen, M. J., Parvez, F., Slavkovich, V., Ilievski, V., Lomax-Luu, A. M., ... & Gamble, M. V. (2021). Association between body mass index and arsenic methylation in three studies of Bangladeshi adults and adolescents. Environment international, 149, 106401. doi: 10.1016/j.envint.2021.106401. 2. Ahsan, H., Chen, Y., Kibriya, M.G., Slavkovich, V., Parvez, F., Jasmine, F., Gamble, M. V, Graziano, J.H., 2007. Arsenic metabolism, genetic susceptibility, and risk of premalignant skin lesions in Bangladesh. Cancer Epidemiology Biomarkers & Prevention 16, 1270–1278. doi: 10.1158/1055- 9965.EPI-06-0676 2. Ahsan, H., Chen, Y., Kibriya, M.G., Slavkovich, V., Parvez, F., Jasmine, F., Gamble, M. V, Graziano, J.H., 2007. Arsenic metabolism, genetic susceptibility, and risk of premalignant skin lesions in Bangladesh. Cancer Epidemiology Biomarkers & Prevention 16, 1270–1278. doi: 10.1158/1055- 9965.EPI-06-0676 3. Argos, M., Tong, L., Roy, S., Sabarinathan, M., Ahmed, A., Islam, M.T., Islam, T., Rakibuz-Zaman, M., Sarwar, G., Shahriar, H., 2018. Screening for gene–environment (G× E) interaction using omics data 3. Argos, M., Tong, L., Roy, S., Sabarinathan, M., Ahmed, A., Islam, M.T., Islam, T., Rakibuz-Zaman, M., Sarwar, G., Shahriar, H., 2018. Screening for gene–environment (G× E) interaction using omics data Page 15/27 Page 15/27 from exposed individuals: an application to gene-arsenic interaction. Mammalian genome 29, 101– 111. doi: 10.1007/s00335-018-9737-8. from exposed individuals: an application to gene-arsenic interaction. Mammalian genome 29, 101– 111. doi: 10.1007/s00335-018-9737-8. 4. Astolfi, M. L., Protano, C., Schiavi, E., Marconi, E., Capobianco, D., Massimi, L., ... & Mastromarino, P. (2019). A prophylactic multi-strain probiotic treatment to reduce the absorption of toxic elements: In- vitro study and biomonitoring of breast milk and infant stools. Environment international, 130, 104818. doi: 10.1016/j.envint.2019.05.012. 5. Banerjee, N., Nandy, S., Kearns, J.K., Bandyopadhyay, A.K., Das, J.K., Majumder, P., Basu, S., Banerjee, S., Sau, T.J., States, J.C., 2011. Polymorphisms in the TNF-α and IL10 gene promoters and risk of arsenic-induced skin lesions and other nondermatological health effects. Toxicological Sciences 121, 132–139. doi: 10.1093/toxsci/kfr046. 6. Bettley, F. R., & O'shea, J. A. (1975). The absorption of arsenic and its relation to carcinoma. British Journal of Dermatology, 92(5), 563-568. doi: 10.1111/j.1365-2133.1975.tb03125.x. 7. Bhattacharjee, P., Das, N., Chatterjee, D., Banerjee, A., Das, J.K., Basu, S., Banerjee, S., Majumder, P., Goswami, P., Giri, A.K., 2013. Association of NALP2 polymorphism with arsenic induced skin lesions and other health effects. Mutation Research/Genetic Toxicology and Environmental Mutagenesis 755, 1–5. doi: 10.1016/j.mrgentox.2013.04.010. 8. Bhattacharya, P., Samal, A. C., Majumdar, J., & Santra, S. C. (2010). References Arsenic contamination in rice, wheat, pulses, and vegetables: a study in an arsenic affected area of West Bengal, India. Water, Air, & Soil Pollution, 213, 3-13. https://doi.org/10.1007/s11270-010-0361-9 9. Bhowmick, S., Nath, B., Halder, D., Biswas, A., Majumder, S., Mondal, P., Chakraborty, S., Nriagu, J., Bhattacharya, P., Iglesias, M., Roman-Ross, G., Guha Mazumder, D.N., Bundschuh, J., Chatterjee, D., 2013. Arsenic mobilization in the aquifers of three physiographic settings of West Bengal, India: understanding geogenic and anthropogenic influences. J. Hazard. Mater. 262, 915–923. https://doi.org/10.1016/j.jhazmat.2012.07.014. 10. Bhowmick, S., Pramanik, S., Singh, P., Mondal, P., Chatterjee, D., Nriagu, J., 2018. Arsenic in groundwater of West Bengal, India: a review of human health risks and assessment of possible intervention options. Science of the Total Environment 612, 148–169. doi: 10.1016/j.scitotenv.2017.08.216. 11. Bilici, N., Doğan, E., Sevinç, E., Sevinç, N., Akinci, G., Musmul, A., ... & Ayhanci, A. (2022). Blood and Stool Arsenic Levels Are Decisive for Diagnosing Children’s Functional Gastrointestinal Disease (FGD). Biological Trace Element Research, 1-10. doi: 10.1007/s12011-021-02919-4. 12. Biswas A, Biswas S, Santra SC. (2012) Risk from winter vegetables and pulses produced in arsenic endemic areas of Nadia District: field study comparison with market basket survey. Bull Environ Contam Toxicol. Jun;88(6):909-14. doi: 10.1007/s00128-012-0569-z. 13. Biswas, A., Deb, D., Ghose, A., Santra, S. C., & Guha Mazumder, D. N. (2014). Seasonal perspective of dietary arsenic consumption and urine arsenic in an endemic population. Environmental monitoring and assessment, 186, 4543-4551. doi: 10.1007/s10661-014-3718-5. Page 16/27 14. Biswas, A., Pal, S., & Paul, S. (2023). Recent status of cadmium-contaminated paddy field and its impact on food safety: a field study over two y in North 24 Parganas, West Bengal, India. Journal of Crop Science and Biotechnology, 1-17. http://dx.doi.org/10.1007/s12892-023-00216-1 15. Biswas, B., Chakraborty, A., Chatterjee, D., Pramanik, S., Ganguli, B., Majumdar, K. K., ... & Bhowmick, S. (2021). Arsenic exposure from drinking water and staple food (rice): a field scale study in rural Bengal for assessment of human health risk. Ecotoxicology and Environmental Safety, 228, 113012. doi: 10.1016/j.ecoenv.2021.113012. 16. Bleam, W. F. (2016). Risk assessment in Soil and environmental chemistry. Academic Press. 17. Britannica, The Editors of Encyclopaedia. "feces". Encyclopedia Britannica, 26 Apr. 2023, https://www.britannica.com/science/feces. Accessed 6 September 2023. 18. Buchet, J.P., Lauwerys, R. & Roels, H. Urinary excretion of inorganic arsenic and its metabolites after repeated ingestion of sodium metaarsenite by volunteers. Int. Arch Occup Environ Heath 48, 111– 118 (1981). https://doi.org/10.1007/BF00378431 19. References Buekers, J., Baken, K., Govarts, E., Martin, L. R., Vogel, N., Kolossa-Gehring, M., ... & Schoeters, G. (2023). Human urinary arsenic species, associated exposure determinants and potential health risks assessed in the HBM4EU Aligned Studies. International Journal of Hygiene and Environmental Health, 248, 114115. doi: 10.1016/j.ijheh.2023.114115. 20. Calderon, R. L., Hudgens, E., Le, X. C., Schreinemachers, D., & Thomas, D. J. (1999). Excretion of arsenic in urine as a function of exposure to arsenic in drinking water. Environmental Health Perspectives, 107(8), 663-667. doi: 10.1289/ehp.99107663. 21. Chakraborti, D., Das, B., Rahman, M. M., Chowdhury, U. K., Biswas, B., Goswami, A. B., ... & Das, D. (2009). Status of groundwater arsenic contamination in the state of West Bengal, India: A 20‐year study report. Molecular nutrition & food research, 53(5), 542-551. doi: 10.1002/mnfr.200700517. 22. Chakraborti, D., Rahman, M. M., Paul, K., Chowdhury, U. K., Sengupta, M. K., Lodh, D., ... & Mukherjee, S. C. (2002). Arsenic calamity in the Indian subcontinent: what lessons have been learned?. Talanta, 58(1), 3-22. doi: 10.1016/s0039-9140(02)00270-9. 23. Chatterjee, D., Halder, D., Majumder, S., Biswas, A., Nath, B., Bhattacharya, P., Bhowmick, S., Mukherjee-Goswami, A., Saha, D., Maity, P.B., Chatterjee, D., Mukherjee, A., Bundschuh, J., 2010. Assessment of arsenic exposure from groundwater and rice in Bengal Delta Region, West Bengal, India. Water Res. 44, 5803–5812. https://doi.org/10.1016/j.watres.2010.04.007. 24. Chen, Y., Parvez, F., Gamble, M., Islam, T., Ahmed, A., Argos, M., ... & Ahsan, H. (2009). Arsenic exposure at low-to-moderate levels and skin lesions, arsenic metabolism, neurological functions, and biomarkers for respiratory and cardiovascular diseases: review of recent findings from the Health Effects of Arsenic Longitudinal Study (HEALS) in Bangladesh. Toxicology and applied pharmacology, 239(2), 184-192. doi: 10.1016/j.taap.2009.01.010. 25. Choi, J. W., Song, Y. C., Cheong, N. Y., Lee, K., Kim, S., Lee, K. M., ... & Kim, S. (2022). Concentrations of blood and urinary arsenic species and their characteristics in general Korean population. Environmental Research, 214, 113846. doi: 10.1016/j.envres.2022. 25. Choi, J. W., Song, Y. C., Cheong, N. Y., Lee, K., Kim, S., Lee, K. M., ... & Kim, S. (2022). Concentrations of blood and urinary arsenic species and their characteristics in general Korean population. Environmental Research, 214, 113846. doi: 10.1016/j.envres.2022. Page 17/27 Page 17/27 26. Chowdhury, N. R., Das, A., Joardar, M., De, A., Mridha, D., Das, R., ... & Roychowdhury, T. (2020). References Flow of arsenic between rice grain and water: Its interaction, accumulation and distribution in different fractions of cooked rice. Science of the Total Environment, 731, 138937. doi: 10.1016/j.scitotenv.2020.138937. 27. Chowdhury, N.R., Das, R., Joardar, M., Ghosh, S., Bhowmick, S., Roychowdhury, T., 2018. Arsenic accumulation in paddy plants at different phases of pre-monsoon cultivation. Chemosphere 210, 987–997. https://doi.org/10.1016/j.chemosphere.2018.07.041. 28. Chung JY, Yu SD, Hong YS. Environmental source of arsenic exposure. J Prev Med Public Health. 2014 Sep;47(5):253-7. doi: 10.3961/jpmph.14.036. 28. Chung JY, Yu SD, Hong YS. Environmental source of arsenic exposure. J Prev Med Public Health. 2014 Sep;47(5):253-7. doi: 10.3961/jpmph.14.036. 29. Dahiya, D., & Nigam, P. S. (2023). Antibiotic-therapy-induced gut dysbiosis affecting gut microbiota— brain Axis and cognition: Restoration by intake of probiotics and synbiotics. International Journal of Molecular Sciences, 24(4), 3074. doi: 10.3390/ijms24043074. 29. Dahiya, D., & Nigam, P. S. (2023). Antibiotic-therapy-induced gut dysbiosis affecting gut microbiota— brain Axis and cognition: Restoration by intake of probiotics and synbiotics. International Journal of Molecular Sciences, 24(4), 3074. doi: 10.3390/ijms24043074. 30. Danko, I.M., Chaschin, N.A., 2005. Association of CYP2E1 gene polymorphism with predisposition to cancer development. Exp Oncol 27, 248–256. 30. Danko, I.M., Chaschin, N.A., 2005. Association of CYP2E1 gene polymorphism with predisposition to cancer development. Exp Oncol 27, 248–256. 31. Das, A., Joardar, M., Chowdhury, N. R., De, A., Mridha, D., & Roychowdhury, T. (2021a). Arsenic toxicity in livestock growing in arsenic endemic and control sites of West Bengal: risk for human and environment. Environmental Geochemistry and Health, 43, 3005-3025. doi: 10.1007/s10653-021- 00808-2. 31. Das, A., Joardar, M., Chowdhury, N. R., De, A., Mridha, D., & Roychowdhury, T. (2021a). Arsenic toxicity in livestock growing in arsenic endemic and control sites of West Bengal: risk for human and environment. Environmental Geochemistry and Health, 43, 3005-3025. doi: 10.1007/s10653-021- 00808-2. 32. Das, A., Joardar, M., De, A., Mridha, D., Chowdhury, N. R., Khan, M. T. B. K., ... & Roychowdhury, T. (2021b). Pollution index and health risk assessment of arsenic through different groundwater sources and its load on soil-paddy-rice system in a part of Murshidabad district of West Bengal, India. Groundwater for Sustainable Development, 15, 100652. https://doi.org/10.1016/j.gsd.2021.100652. 33. Das, A., Majumder, S., Barman, S., Chatterjee, D., Mukhopadhyay, S., Ghosh, P., Pal, C.N., Saha, G., 2021. Influence of basin-wide geomorphology on arsenic distribution in Nadia district. Environ Res 192, 110314. https://doi.org/10.1016/j.envres.2020.110314. 34. Das, A., Joardar, M., Chowdhury, N. R., Mridha, D., De, A., Majumder, S., ... References & Roychowdhury, T. 2023. Significance of the prime factors regulating arsenic toxicity and associated health risk: A hypothesis- based investigation in a critically exposed population of West Bengal, India. Environmental Geochemistry and Health, 45(6), 3423-3446. doi: 10.1007/s10653-022-01422-6. 35. Das, N., Giri, A., Chakraborty, S., Bhattacharjee, P., 2016. Association of single nucleotide polymorphism with arsenic-induced skin lesions and genetic damage in exposed population of West Bengal, India. Mutation Research/Genetic Toxicology and Environmental Mutagenesis 809, 50–56. doi: 10.1016/j.mrgentox.2016.09.006. 36. De Chaudhuri, S., Ghosh, P., Sarma, N., Majumdar, P., Sau, T.J., Basu, S., Roychoudhury, S., Ray, K., Giri, A.K., 2008. Genetic variants associated with arsenic susceptibility: study of purine nucleoside phosphorylase, arsenic (+ 3) methyltransferase, and glutathione S-transferase omega genes. Environ Health Perspect 116, 501–505. doi: 10.1289/ehp.10581. Page 18/27 Page 18/27 37. De Chaudhuri, S., Mahata, J., Das, J.K., Mukherjee, A., Ghosh, P., Sau, T.J., Mondal, L., Basu, S., Giri, A.K., Roychoudhury, S., 2006. Association of specific p53 polymorphisms with keratosis in individuals exposed to arsenic through drinking water in West Bengal, India. Mutation Research/Fundamental and Molecular Mechanisms of Mutagenesis 601, 102–112. https://doi.org/10.1016/j.mrfmmm.2006.06.014. 38. Engström, K., Vahter, M., Mlakar, S.J., Concha, G., Nermell, B., Raqib, R., Cardozo, A., Broberg, K., 2011. Polymorphisms in arsenic (+ III oxidation state) methyltransferase (AS3MT) predict gene expression of AS3MT as well as arsenic metabolism. Environ Health Perspect 119, 182–188. doi: 10.1289/ehp.1002471. 39. Gao, S., Mostofa, M.G., Quamruzzaman, Q., Rahman, Mahmudur, Rahman, Mohammad, Su, L., Hsueh, Y., Weisskopf, M., Coull, B., Christiani, D.C., 2019. Gene-environment interaction and maternal arsenic methylation efficiency during pregnancy. Environ Int 125, 43–50. doi: 10.1016/j.envint.2019.01.042. 40. Ghosh, P., Basu, A., Mahata, J., Basu, S., Sengupta, M., Das, J.K., Mukherjee, A., Sarkar, A.K., Mondal, L., Ray, K., 2006. Cytogenetic damage and genetic variants in the individuals susceptible to arsenic‐ induced cancer through drinking water. Int J Cancer 118, 2470–2478. doi: 10.1002/ijc.21640. 41. Guha Mazumder, D., Purkayastha, I., Ghose, A., Mistry, G., Saha, C., Nandy, A. K., ... & Majumdar, K. K. (2012). Hypertension in chronic arsenic exposure: A case control study in West Bengal. Journal of Environmental Science and Health, Part A, 47(11), 1514-1520. doi: 10.1080/10934529.2012.680329. 42. Halder, D., Bhowmick, S., Biswas, A., Chatterjee, D., Nriagu, J., Guha Mazumder, D.N., ˇSlejkovec, Z., Jacks, G., Bhattacharya, P., (2013). Risk of arsenic exposure from drinking water and dietary components: implications for risk management in rural Bengal. Environ. Sci. Technol. 47, 1120– 1127. doi: 10.1021/es303522s. 43. References Halder, D., Biswas, A., Šlejkovec, Z., Chatterjee, D., Nriagu, J., Jacks, G., Bhattacharya, P., 2014. Arsenic species in raw and cooked rice: implications for human health in rural Bengal. Sci. Total Environ. 497–498, 200–208. doi: 10.1016/j.scitotenv.2014.07.075. 44. Hall, M., Chen, Y., Ahsan, H., Slavkovich, V., Van Geen, A., Parvez, F., & Graziano, J. (2006). Blood arsenic as a biomarker of arsenic exposure: results from a prospective study. Toxicology, 225(2-3), 225-233. doi: 10.1016/j.tox.2006.06.010. 45. Hardy, F., Takser, L., Gillet, V., Baccarelli, A. A., & Bellenger, J. P. (2023). Characterization of childhood exposure to environmental contaminants using stool in a semi-urban middle-class cohort from eastern Canada. Environmental Research, 222, 115367. doi: 10.1016/j.envres.2023.115367. 46. Hernández, A., Marcos, R., 2008. Genetic variations associated with interindividual sensitivity in the response to arsenic exposure. Pharmacogenomics 9, 1113–32. doi: 10.2217/14622416.9.8.1113. 47. Hindmarsh, J. T. (2002). Caveats in hair analysis in chronic arsenic poisoning. Clinical Biochemistry, 35(1), 1-11. doi: 10.1016/s0009-9120(01)00282-x. 48. Hinwood, A. L., Sim, M. R., Jolley, D., de Klerk, N., Bastone, E. B., Gerostamoulos, J., & Drummer, O. H. (2003). Hair and toenail arsenic concentrations of residents living in areas with high environmental Page 19/27 Page 19/27 arsenic concentrations. Environmental health perspectives, 111(2), 187-193. doi: 10.1289/ehp.5455. 49. Hopenhayn-Rich, C., Biggs, M. L., Kalman, D. A., Moore, L. E., & Smith, A. H. (1996). Arsenic methylation patterns before and after changing from high to lower concentrations of arsenic in drinking water. Environmental Health Perspectives, 104(11), 1200-1207. doi: 10 1289/ehp 961041200 arsenic concentrations. Environmental health perspectives, 111(2), 187-193. doi: 10.1289/ehp.5455. 49. Hopenhayn-Rich, C., Biggs, M. L., Kalman, D. A., Moore, L. E., & Smith, A. H. (1996). Arsenic methylation patterns before and after changing from high to lower concentrations of arsenic in drinking water. Environmental Health Perspectives, 104(11), 1200-1207. doi: 10.1289/ehp.961041200. 50. Hudgens, E. E., Drobna, Z., He, B., Le, X. C., Styblo, M., Rogers, J., & Thomas, D. J. (2016). Biological and behavioral factors modify urinary arsenic metabolic profiles in a US population. Environmental Health, 15, 1-14. doi: 10.1186/s12940-016-0144-x. 51. IARC Working Group on the Evaluation of Carcinogenic Risks to Humans. (2012). Pharmaceuticals. Volume 100 A. A review of human carcinogens. IARC monographs on the evaluation of carcinogenic risks to humans, 100(PT A), 1. 52. Ingalls, R. L., & Johnston, F. A. (1954). Iron from Gastrointestinal Sources Excreted in the Feces of Human Subjects: One Figure. The Journal of Nutrition, 53(3), 351-363. https://doi.org/10.1093/jn/53.3.351. 53. Samal, A. References C., Kar, S., Bhattacharya, P., & Santra, S. C. (2011). Human exposure to arsenic through foodstuffs cultivated using arsenic contaminated groundwater in areas of West Bengal, India. Journal of Environmental Science and Health, Part A, 46(11), 1259-1265. doi: 10.1080/10934529.2011.598810. 54. Joardar, M., Das, A., Chowdhury, N. R., Mridha, D., Das, J., De, A., ... & Roychowdhury, T. (2022). Impact of treated drinking water on arsenicosis patients with continuous consumption of contaminated dietary foodstuffs: A longitudinal health effect study from arsenic prone area, West Bengal, India. Groundwater for Sustainable Development, 18, 100786. https://doi.org/10.1016/j.gsd.2022.100786. 55. Joardar, M., Das, A., Mridha, D., De, A., Chowdhury, N. R., & Roychowdhury, T. (2021). Evaluation of acute and chronic arsenic exposure on school children from exposed and apparently control areas of West Bengal, India. Exposure and Health, 13, 33-50. https://doi.org/10.1007/s12403-020-00360-x 56. Karagas, M. R., McRitchie, S., Hoen, A. G., Takigawa, C., Jackson, B., Baker, E. R., ... & Pathmasiri, W. (2022). Alterations in microbial-associated fecal metabolites in relation to arsenic exposure among infants. Exposure and health, 14(4), 941-949. https://doi.org/10.1007/s12403-022-00468-2 57. Karagas, M. R., Morris, J. S., Weiss, J. E., Spate, V., Baskett, C., & Greenberg, E. R. (1996). Toenail samples as an indicator of drinking water arsenic exposure. Cancer epidemiology, biomarkers & prevention: a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology, 5(10), 849-852. 54. Joardar, M., Das, A., Chowdhury, N. R., Mridha, D., Das, J., De, A., ... & Roychowdhury, T. (2022). Impact of treated drinking water on arsenicosis patients with continuous consumption of contaminated dietary foodstuffs: A longitudinal health effect study from arsenic prone area, West Bengal, India. Groundwater for Sustainable Development, 18, 100786. https://doi.org/10.1016/j.gsd.2022.100786. 55. Joardar, M., Das, A., Mridha, D., De, A., Chowdhury, N. R., & Roychowdhury, T. (2021). Evaluation of acute and chronic arsenic exposure on school children from exposed and apparently control areas of West Bengal, India. Exposure and Health, 13, 33-50. https://doi.org/10.1007/s12403-020-00360-x 56. Karagas, M. R., McRitchie, S., Hoen, A. G., Takigawa, C., Jackson, B., Baker, E. R., ... & Pathmasiri, W. (2022). Alterations in microbial-associated fecal metabolites in relation to arsenic exposure among infants. Exposure and health, 14(4), 941-949. https://doi.org/10.1007/s12403-022-00468-2 57. Karagas, M. R., Morris, J. S., Weiss, J. E., Spate, V., Baskett, C., & Greenberg, E. R. (1996). Toenail samples as an indicator of drinking water arsenic exposure. References Cancer epidemiology, biomarkers & prevention: a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology, 5(10), 849-852. 58. Katz, S. A. (2019). On the use of hair analysis for assessing arsenic intoxication. International journal of environmental research and public health, 16(6), 977. doi: 10.3390/ijerph16060977. 58. Katz, S. A. (2019). On the use of hair analysis for assessing arsenic intoxication. International journal of environmental research and public health, 16(6), 977. doi: 10.3390/ijerph16060977. 59. Kile, M. L., Hoffman, E., Hsueh, Y. M., Afroz, S., Quamruzzaman, Q., Rahman, M., ... & Christiani, D. C. (2009). Variability in biomarkers of arsenic exposure and metabolism in adults over time. Environmental health perspectives, 117(3), 455-460. doi: 10.1289/ehp.11251. Page 20/27 Page 20/27 60. Kumar, A., Kumar, R., Rahman, M. S., Ali, M., Kumar, R., Nupur, N., ... & Ghosh, A. K. (2021). Assessment of arsenic exposure in the population of Sabalpur village of Saran District of Bihar with mitigation approach. Environmental Science and Pollution Research, 28, 43923-43934. doi: 10.1007/s11356-021-13521-5. 61. Lindberg, A. L., Ekström, E. C., Nermell, B., Rahman, M., Lönnerdal, B., Persson, L. Å., & Vahter, M. (2008). Gender and age differences in the metabolism of inorganic arsenic in a highly exposed population in Bangladesh. Environmental research, 106(1), 110-120. doi: 10.1016/j.envres.2007.08.011. 62. Lindberg, A.-L., Kumar, R., Goessler, W., Thirumaran, R., Gurzau, E., Koppova, K., Rudnai, P., Leonardi, G., Fletcher, T., Vahter, M., 2007. Metabolism of low-dose inorganic arsenic in a central European population: influence of sex and genetic polymorphisms. Environ Health Perspect 115, 1081–1086. doi: 10.1289/ehp.10026. 63. Luo, L., Li, Y., Gao, Y., Zhao, L., Feng, H., Wei, W., Qiu, C., He, Q., Zhang, Y., Fu, S., 2018. Association between arsenic metabolism gene polymorphisms and arsenic-induced skin lesions in individuals exposed to high-dose inorganic arsenic in northwest China. Sci Rep 8, 413. https://doi.org/10.1038/s41598-017-18925-3 64. Mahmudur Rahman, M., Kumar Sengupta, M., Ahamed, S., Lodh, D., Das, B., Amir Hossain, M., Nayak, B., Mukherjee, A., Chakraborti, D., Chandra Mukherjee, S., 2005. Murshidabad—One of the nine groundwater arsenic-affected districts of West Bengal, India. Part I: Magnitude of contamination and population at risk. Clin Toxicol 43, 823–834. http://dx.doi.org/10.1080/15563650500357461 65. Marchiset-Ferlay, N., Savanovitch, C., & Sauvant-Rochat, M. P. (2012). What is the best biomarker to assess arsenic exposure via drinking water?. Environment international, 39(1), 150-171. doi: 10.1016/j.envint.2011.07.015. 66. Mazumder, D.N.G., Chakraborty, A.K., Ghose, A., Gupta, J. Das, Chakraborty, D.P., Dey, S.B., Chattopadhyay, N., 1988. References Chronic arsenic toxicity from drinking tubewell water in rural West Bengal. Bull World Health Organ 66, 499. 67. Mazumder, D.N.G., Ghosh, A., Majumdar, K.K., Ghosh, N., Saha, C., Mazumder, R.N.G., 2010. Arsenic contamination of ground water and its health impact on population of district of Nadia, West Bengal, India. Indian J Community Med 35, 331. doi: 10.4103/0970-0218.66897. 68. Mazumder, D.N.G., Haque, R., Ghosh, N., De, B.K., Santra, A., Chakraborty, D., Smith, A.H., 1998. Arsenic levels in drinking water and the prevalence of skin lesions in West Bengal, India. Int J Epidemiol 27, 871–877. doi: 10.1093/ije/27.5.871. 69. Mazumder, D. N. G., Deb, D., Biswas, A., Saha, C., Nandy, A., Das, A., ... & Mazumdar, K. K., 2014. Dietary arsenic exposure with low level of arsenic in drinking water and biomarker: a study in West Bengal. Journal of Environmental Science and Health, Part A, 49(5), 555-564. doi: 10.1080/10934529.2014.859042. 70. McCarty, K.M., Chen, Y.-C., Quamruzzaman, Q., Rahman, M., Mahiuddin, G., Hsueh, Y.-M., Su, L., Smith, T., Ryan, L., Christiani, D.C., 2007. Arsenic methylation, GSTT1, GSTM1, GSTP1 polymorphisms, and Page 21/27 Page 21/27 skin lesions. Environ Health Perspect 115, 341–345. doi: 10.1289/ehp.9152. skin lesions. Environ Health Perspect 115, 341–345. doi: 10.1289/ehp.9152. 71. Mohri, T., Hisanaga, A., & Ishinishi, N. (1990). Arsenic intake and excretion by Japanese adults: a 7- day duplicate diet study. Food and Chemical Toxicology, 28(7), 521-529. doi: 10.1016/0278- 6915(90)90123-5. 72. Nachman, K. E., Ginsberg, G. L., Miller, M. D., Murray, C. J., Nigra, A. E., & Pendergrast, C. B. (2017). Mitigating dietary arsenic exposure: Current status in the United States and recommendations for an improved path forward. Science of the Total Environment, 581, 221-236. doi: 10.1016/j.scitotenv.2016.12.112. 73. Normandin, L., Ayotte, P., Levallois, P., Ibanez, Y., Courteau, M., Kennedy, G., ... & Bouchard, M. (2014). Biomarkers of arsenic exposure and effects in a Canadian rural population exposed through groundwater consumption. Journal of Exposure Science & Environmental Epidemiology, 24(2), 127- 134. doi: 10.1038/jes.2013.80. 74. Nriagu, J., Lin, T.-S., Mazumder, D.G., Chatterjee, D., 2012. E-cadherin polymorphisms and susceptibility to arsenic-related skin lesions in West Bengal, India. Science of the total environment 420, 65–72. doi: 10.1016/j.scitotenv.2012.01.007. 75. Peduzzi, P., Concato, J., Kemper, E., Holford, T.R., Feinstein, A.R., 1996. A simulation study of the number of events per variable in logistic regression analysis. J Clin Epidemiol 49, 1373–1379. doi: 10.1016/s0895-4356(96)00236-3. 76. References Pierce, B.L., Kibriya, M.G., Tong, L., Jasmine, F., Argos, M., Roy, S., Paul-Brutus, R., Rahaman, R., Rakibuz-Zaman, M., Parvez, F., 2012. Genome-wide association study identifies chromosome 10q24. 32 variants associated with arsenic metabolism and toxicity phenotypes in Bangladesh. PLoS Genet 8, e1002522. doi: 10.1371/journal.pgen.1002522. 77. Pierce, B.L., Tong, L., Argos, M., Gao, J., Jasmine, F., Roy, S., Paul-Brutus, R., Rahaman, R., Rakibuz- Zaman, M., Parvez, F., 2013. Arsenic metabolism efficiency has a causal role in arsenic toxicity: Mendelian randomization and gene-environment interaction. Int J Epidemiol 42, 1862–1872. doi: 10.1093/ije/dyt182. 78. Podgorski, J., Berg, M., 2020. Global threat of arsenic in groundwater. Science 368, 845-850. doi: 10.1126/science.aba1510. 79. Pomroy, C., Charbonneau, S. M., McCullough, R. S., & Tam, G. K. H. (1980). Human retention studies with 74As. Toxicology and Applied Pharmacology, 53(3), 550-556. doi: 10.1016/0041- 008x(80)90368-3. 80. Public and Health Engineering Department, Govt. of West Bengal in a Vision Plan – 2020; http://www.wbphed.gov.in/main/index.php/vision-2020 80. Public and Health Engineering Department, Govt. of West Bengal in a Vision Plan – 2020; http://www.wbphed.gov.in/main/index.php/vision-2020 81. Rahaman, M. S., Mise, N., & Ichihara, S. (2022). Arsenic contamination in food chain in Bangladesh: A review on health hazards, socioeconomic impacts and implications. Hygiene and Environmental Health Advances, 2, 100004. http://dx.doi.org/10.1016/j.heha.2022.100004 81. Rahaman, M. S., Mise, N., & Ichihara, S. (2022). Arsenic contamination in food chain in Bangladesh: A review on health hazards, socioeconomic impacts and implications. Hygiene and Environmental Health Advances, 2, 100004. http://dx.doi.org/10.1016/j.heha.2022.100004 82. Rana, T., Bera, A. K., Bhattacharya, D., Das, S., Pan, D., & Das, S. K. (2012). Chronic arsenicosis in goats with special reference to its exposure, excretion and deposition in an arsenic contaminated 82. Rana, T., Bera, A. K., Bhattacharya, D., Das, S., Pan, D., & Das, S. K. (2012). Chronic arsenicosis in goats with special reference to its exposure, excretion and deposition in an arsenic contaminated Page 22/27 Page 22/27 zone. Environmental toxicology and pharmacology, 33(2), 372-376. doi: 10.1016/j.etap.2011.12.026. 83. Rasheed, H., Kay, P., Slack, R., & Gong, Y. Y. (2019). Assessment of arsenic species in human hair, toenail and urine and their association with water and staple food. Journal of exposure science & environmental epidemiology, 29(5), 624-632. https://doi.org/10.1038/s41370-018-0056-7 84. Rehman, U. U., Khan, S., & Muhammad, S. (2020). Ingestion of arsenic-contaminated drinking water leads to health risk and traces in human biomarkers (hair, nails, blood, and urine), Pakistan. Exposure and Health, 12, 243-254. https://doi.org/10.1007/s12403-019-00308-w 85. Rivera-Núñez, Z., Meliker, J. References R., Meeker, J. D., Slotnick, M. J., & Nriagu, J. O. (2012). Urinary arsenic species, toenail arsenic, and arsenic intake estimates in a Michigan population with low levels of arsenic in drinking water. Journal of exposure science & environmental epidemiology, 22(2), 182-190. doi: 10.1038/jes.2011.27 86. Schlebusch, C.M., Lewis Jr, C.M., Vahter, M., Engström, K., Tito, R.Y., Obregón-Tito, A.J., Huerta, D., Polo, S.I., Medina, Á.C., Brutsaert, T.D., 2013. Possible positive selection for an arsenic-protective haplotype in humans. Environ Health Perspect 121, 53–58. doi: 10.1289/ehp.1205504. 87. Shaji, E., Santosh, M., Sarath, K. V., Prakash, P., Deepchand, V., & Divya, B. V. (2021). Arsenic contamination of groundwater: A global synopsis with focus on the Indian Peninsula. Geoscience frontiers, 12(3), 101079. https://doi.org/10.1016/j.gsf.2020.08.015. 88. Signes-Pastor, A. J., Gutiérrez-González, E., Garcia-Villarino, M., Rodríguez-Cabrera, F. D., López- Moreno, J. J., Varea-Jiménez, E., ... & Karagas, M. R. (2021). Toenails as a biomarker of exposure to arsenic: A review. Environmental research, 195, 110286. doi: 10.1016/j.envres.2020.110286. 89. Singh, S.K., Taylor, R.W., Rahman, M.M., Pradhan, B., 2018. Developing robust arsenic awareness prediction models using machine learning algorithms. J Environ Manage 211, 125–137. doi: 10.1016/j.jenvman.2018.01.044. 90. Smalheiser, N. (2017). Data literacy: How to make your experiments robust and reproducible. Academic Press. 91. States JC, Barchowsky A, Cartwright IL, Reichard JF, Futscher BW, Lantz RC (2011) Arsenic toxicology: translating between experimental models and human pathology. Environ Health Perspect 119(10):1356–136. doi: 10.1289/ehp.1103441. 92. Takayama, Y., Masuzaki, Y., Mizutani, F., Iwata, T., Maeda, E., Tsukada, M., ... & Murata, K. (2021). Associations between blood arsenic and urinary arsenic species concentrations as an exposure characterization tool. Science of The Total Environment, 750, 141517. doi: 10.1016/j.scitotenv.2020. 93. United States Environmental Protection Agency (USEPA) (1989). Risk assessment guidance for superfund volume 1 human health evaluation manual (part a) interim final EPA/540/l −89/002 (Vol. I). Washington, DC: United States Environmental Protection Agency. 94. United States Environmental Protection Agency (USEPA). (2015). Risk based screening table-generic, summary table. United States Environmental Protection Agency. https://www.epa.gov/risk/regional- screening-levels-rsls-generic-tables 94. United States Environmental Protection Agency (USEPA). (2015). Risk based screening table-generic, summary table. United States Environmental Protection Agency. https://www.epa.gov/risk/regional- screening-levels-rsls-generic-tables Page 23/27 95. Valenzuela, O.L., Drobná, Z., Hernández-Castellanos, E., Sánchez-Peña, L.C., García-Vargas, G.G., Borja-Aburto, V.H., Stýblo, M., Del Razo, L.M., 2009. Association of AS3MT polymorphisms and the risk of premalignant arsenic skin lesions. Toxicol Appl Pharmacol 239, 200–207. doi: 10.1016/j.taap.2009.06.007. 96. van Geen, A., Duxbury, J.M., 2009. References Comment on ‘‘Growing rice aerobically markedly Decreases Arsenic Accumulation". http://dx.doi.org/10.1021/es9002982. 97. Van Haarst, E. P., Heldeweg, E. A., Newling, D. W., & Schlatmann, T. J. (2004). The 24‐h frequency‐ volume chart in adults reporting no voiding complaints: defining reference values and analysing variables. BJU international, 93(9), 1257-1261. doi: 10.1111/j.1464-4096.2004.04821.x. 98. Vega-Millán, C. B., Dévora-Figueroa, A. G., Burgess, J. L., Beamer, P. I., Furlong, M., Lantz, R. C., ... & Meza-Montenegro, M. M. 2021. Inflammation biomarkers associated with arsenic exposure by drinking water and respiratory outcomes in indigenous children from three Yaqui villages in southern Sonora, México. Environmental Science and Pollution Research, 28, 34355-34366. doi: 10.1007/s11356-021-13070-x. 99. Wang, D., Shimoda, Y., Wang, S., Wang, Z., Liu, J., Liu, X., ... & An, Y. 2017. Total arsenic and speciation analysis of saliva and urine samples from individuals living in a chronic arsenicosis area in China. Environmental health and preventive medicine, 22, 1-9. doi: 10.1186/s12199-017-0652-5. 100. Wang, Y.-H., Yeh, S.-D., Shen, K.-H., Shen, C.-H., Juang, G.-D., Hsu, L.-I., Chiou, H.-Y., Chen, C.-J., 2009. A significantly joint effect between arsenic and occupational exposures and risk genotypes/diplotypes of CYP2E1, GSTO1 and GSTO2 on risk of urothelial carcinoma. Toxicol Appl Pharmacol 241, 111– 118. doi: 10.1016/j.taap.2009.08.008. 101. Wei, B., Yu, J., Wang, J., Yang, L., Li, H., Kong, C., ... & Wu, K. 2017. The relationships between arsenic methylation and both skin lesions and hypertension caused by chronic exposure to arsenic in drinking water. Environmental Toxicology and Pharmacology, 53, 89-94. doi: 10.1016/j.etap.2017.05.009. 102. WHO (2005) A field guide for detection, management and surveillance of arsenicosis cases. In: Caussy D (ed) Technical publication no. 30 clinical aspects of arsenicosis. WHO Regional Office for South East Asia, New Delhi, pp 5–9 103. WHO, 2011. Arsenic in Drinking-Water, Background Document for Development of WHO Guidelines for Drinking-Water Quality. 104. Yi Y, Gao S, Xia J, Li C, Zhao Y, Zhang Y, Liang A, Ji, S. 2020. Study of the accumulation and distribution of arsenic species and association with arsenic toxicity in rats after 30 days of oral realgar administration. J Ethnopharmacol 247:111576. doi: 10.1016/j.jep.2018.10.037. 105. Zhang, Q., Hou, Y., Wang, D., Xu, Y., Wang, H., Liu, J., ... & Sun, G. 2020. Interactions of arsenic metabolism with arsenic exposure and individual factors on diabetes occurrence: Baseline findings from Arsenic and Non-Communicable disease cohort (AsNCD) in China. Environmental Pollution, 265, 114968. doi: 10.1016/j.envpol.2020. Page 24/27 Page 24/27 Tables Tables 1 to 5 are available in the Supplementary Files section. Tables 1 to 5 are available in the Supplementary Files section. Figure 1 Stool and urinary arsenic concentrations of subjects against groundwater As concentration; case (a), control (b) Stool and urinary arsenic concentrations of subjects against groundwater As concentration; case (a), control (b) Page 25/27 Page 25/27 Figure 2 Pearson Correlation of multi metal concentrations in stool digests of case (a) and control (b) samples Figure 3 Principle Component Analysis and Loadings plot (inset a and b) based on correlation of multi metal concentrations in stool digests of case (a) and control (b) samples Principle Component Analysis and Loadings plot (inset a and b) based on correlation of multi metal concentrations in stool digests of case (a) and control (b) samples Figure 2 Pearson Correlation of multi metal concentrations in stool digests of case (a) and control (b) samples Pearson Correlation of multi metal concentrations in stool digests of case (a) and control (b) samples Pearson Correlation of multi metal concentrations in stool digests of case (a) and control (b) samples Page 26/27 Figure 3 Principle Component Analysis and Loadings plot (inset a and b) based on correlation of multi metal concentrations in stool digests of case (a) and control (b) samples Figure 3 Supplementary Files This is a list of supplementary files associated with this preprint. Click to download. Tables.pptx Page 27/27
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https://zenodo.org/records/1964809/files/article.pdf
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Tabak
European food research & technology
1,909
public-domain
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Patente. Dr. Johannes Sarti~; in Nikolassee b. Berlin : V e r f a h r e n z u r E n ~ n i k o t i n i s i e r n n g von Tabak. DR.P. 197159 veto 18. M/~rz 1906. (['atentbl. 1908, '29, 1462.)- Die Ent- nikotinisierung des Tabaks erfolgt nach vorliegender Erfindung unter Abschlui~ yon Luft oder Sauerstoff, wobei jegliche Oxydatlon der im Tabak befindlichen ~ubstanzen verhinder~, besonders eine Verunreinigung des behandelten Tabaks mit Oxydationsprodukten des Nikotins und s~,- ~enannten verharzten Substanzen ausgeschlossen wird, w~hrend gleichzei~ig das wertvolle Nikotin im unzersetzten Zustande gewonnen werden kann. Das Verfahren se]bst ist folgendes: Der Tabak wird in losen Schichten oder Btischel[~ in emen geeigneten Apparat gebracht, durch den man fiberhi/zten Wasserdampf ]eitet. Die Temperaiur des iiberhitzten Wasserdampfes sell fiber 100 ° C, aber unte~halb 150 o C ]iegen, well bei letztel'er Temperatur schon die Zer- setzung der Holzsubstanz beginnen wtirde. Zweckm~Sig wahlt man daher beispielsweise die Temperatur yon utlgef~hr' 140 o C. Damit keine Abkiihlung and Wasserkondensation inner- halb des Apparates stattfinden kann, wird derselbe gleichzeitig in geeigneler Weise von aufien und zwaY auf die gleiche Temioeratur. in diesem Falle also auf ungeffihr 140 ° C, erhitzt. Der dut'ch den Apparat und somit dnreh den Tabak geleitete (iberhitzte Wasserdampf bewirkt, unterstiitzt von der Aafienbeheizung des Ap~oarates, eine Verfllichtigung des in dem Tabak t,efindlichen NJkotins and fiihrt dasselbe unzerzetzt mit sich forL. Die eotweichenden D~mpfe w~rden durch ein Rohr abge]eitet und kSnaen dureh elnen KfihlapparaL kondensiert and auf- gefangen werden. ])as wi~ssdge Destillat enthaIt das unzersetzte Nikotin. Papier-Industrie Akt.- Ges.OI!eschau in Nieder-Eisenberg, M/ihren : V e rfahre n zur Eerstellung von Zigarettenpapier. D.R.P. 196789 vom I. Dezember 1906. ~?atentblat~ 1908, 29, 1352.) -- Die Erfindung betrifft eine Neuernng bei dem bekannteo Ver- fahren zur l~erstellung yon Zigarettenpapier aus Ftachs- und t~atfllasern und Tabakabfi~llen dutch meehanische Bearbeitung mit Quetschwalzen bei Gegenwart von AIkalilauge. Diese Neue- rung besteht darin, daft die Bearbeitung dec genannten Fasern und 'l'ab,kabfalle mit den Quetschwalzen ohr~e/~u~ere W/~rmezufuhr stattfindet und dabei Alkali in konzentrierter LSsung anaewendet wird. Es sol1 sieh hierdurch die Tabakmasse mit dem aus den ~ ]aehs- und Leinen- fasern bestehenden Gemenge ianig verfilzen und ein gleichmafliges, homogenes Papierb]att bilden. A. Oelker. p ] A. Oelker. 7~5 7~5 I8. Baud. I ]5.Deze~ber 1909.J Referate. -- Tabak. -- Bier. Tabak. ]t. Marcelet: Uber die Bestilnmung des Kohlenoxyds, insbesondere im Tabakr~uch. (Bull. Soc. Chim. de France 1908, 8~ 556--558.) -- Die gaso- metrische Bestimmung des Kohlenoxyds im Tabakrauch ergab bei Zigaretten ffir 1 g Tabak 20--80 ccm, bei ]?feifentabak ffir 1 g 53--100 ccm Kohlenoxyd. Mit dem Verfahren von L~vy und P~coul (Z. 1906, 11~ 691; 1907, 18~ 435) konnten hiermit fibereinstimmende Resultate nur erzielt werden, wenn das die ¥erbrennungs- gase des Tabaks enthaltende Gemisch so stark mit Luft verdfinnt wurde, da~ tier GehaIt an Kohlenoxyd 0,8--1°/o betrug, nod der Apparat derart abgeandert wurde, da~ das Gas eine dickere Schicht von Jodsiiure zu durehstrelchen hatte. G. Sonntag. Bier. ~. Emslander: Oberfl~.cheneinflfisse beim Diastase-Prozelk (Zeitsehr. f. Chem. u. Ind. d. Kolloide 1907/08, 2, 308--310.) -- Bier und Reaktions- gemisehe des Maischprozesses enthalten Stoffe in kolloidalem Zustand, auf die Ober- fi~cheneinfl6sse sieh geltend machen miissen. Verf. hat im Anschlul3 an friihere Ver- suche (Z. 1905, 10, 372) Untersuchungen angestellt, um solche :Einflfsse, die auger festen KSrpern auch Gasen (der Luft) und anderen, nicht misehbaren Flfissigkeiten (Chloroform, Benzol, Toluol) zukommen, beim Diastaseproze~ nachzuweisen. Versuche, iu denen Malz einerseits wie tiblich, andererseits mit einer dfinnen Schicht von Toluol oder VaselinS1 bedeckt gemaiseht wurde, ergaben deutlich das Vorhandensein yon Oberfl/icheneinfliissen. Durch Ersetzen der Oberfliiche Maische-Luft durch die Be- rfihrungsfl~iche Maische-Toluol oder-VaselinS1 wurde der Dextringehalt im Extrak~ gesteigert, der Maltose- and Eiweil3gehalt verringert. -- Die Erh6hung des Prozent- gehaltes der Ausschlagswfirze durch andauerndes Rfihren w~hrend des Maisehprozesses
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https://journals.unisba.ac.id/index.php/JRM/article/download/1731/1109
Latin
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Model SEIR Penyebaran Covid-19 dengan Parameter Penggunaan Masker Kesehatan dan Vaksinasi
Jurnal Riset Matematika
2,023
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Article history : Creative Commons Attribution- NonCommercial-ShareAlike 4.0 International License. Volume : 3 No. : 1 Halaman : 1-12 Terbitan : Juli 2023 Kata Kunci : Covid-19; Model SEIR; Titik Ekuilibrium. Kata Kunci : Covid-19; Model SEIR; Titik Ekuilibrium. Model SEIR Penyebaran Covid-19 dengan Parameter Penggunaan Masker Kesehatan dan Vaksinasi Shahnaz Afia, Yani Ramdani* Prodi Matematika, Fakultas Matematika dan Ilmu Pengetahuan Alam, Universitas Islam Bandung, Indonesia. Prodi Matematika, Fakultas Matematika dan Ilmu Pengetahuan Alam, Universitas Islam Bandung, Indonesia. @ 2023 Jurnal Riset Matematika Unisba Press. All rights reserved. Corresponding Author : *yaniramdani66@gmail.com Indexed : Garuda, Crossref, Google Scholar DOI : https://doi.org/10.29313/jrm.v3i1.1731 A R T I C L E I N F O A R T I C L E I N F O Article history : Received : 6/2/2023 Revised : 11/6/2023 Published : 17/7/2023 Creative Commons Attribution- NonCommercial-ShareAlike 4.0 International License. Volume : 3 No. : 1 Halaman : 1-12 Terbitan : Juli 2023 Dalam bidang Matematika, penelitian mengenai penyebaran penyakit dapat dilakukan dengan membentuk model epidemiologi. Salah satu jenis model epidemiologi adalah model SEIR. Pada penelitian ini, model SEIR dikembangkan untuk mengetahui pengaruh penggunaan masker kesehatan dan vaksinasi terhadap penyebaran penyakit Covid-19. Keseluruhan populasi dibagi menjadi enam kompartemen, yaitu kompartemen rentan yang tidak menggunakan masker kesehatan, kompartemen rentan yang menggunakan masker kesehatan, kompartemen terpapar, kompartemen terinfeksi yang tidak menggunakan masker kesehatan, kompartemen terinfeksi yang menggunakan masker kesehatan, dan kompartemen sembuh. Model penyebaran Covid-19 dibentuk dengan menyusun diagram kompartemen penyebaran penyakit Covid- 19 dengan parameter penggunaan masker kesehatan dan vaksinasi terlebih dahulu. Setelah model Matematika terbentuk, dilakukan penentuan titik ekuilibrium bebas penyakit, titik ekuilibrium endemik, dan Basic Reproduction Number. Kemudian, dilakukan simulasi numerik. Hasil dari penelitian ini menunjukkan bahwa titik ekuilibrium bebas penyakit bersifat stabil asimtotik lokal saat nilai basic reproduction kurang dari satu. Sementara itu, titik ekuilibrium endemik bersifat stabil asimtotik lokal saat nilai Basic Reproduction Number lebih dari satu. Selain itu, penelitian ini juga menunjukkan bahwa penggunaan masker kesehatan dan vaksinasi berperan dalam penurunan nilai Basic Reproduction Number. Article history : Received : 6/2/2023 Revised : 11/6/2023 Published : 17/7/2023 Article history : Received : 6/2/2023 Revised : 11/6/2023 Published : 17/7/2023 A B S T R A C T In Mathematics, research on the spread of a disease can be carried out by establishing an epidemiological model. One type of epidemiological model is the SEIR model. In this study, the SEIR model was developed to determine the effect of mask wearing and vaccination on the spread of Covid-19. The entire population was divided into six compartments, mask wearing and non mask wearing susceptible compartments, exposed compartment, mask wearing and non mask wearing infected compartments, and recovered compartment. The model for the spread of Covid-19 was formed by compiling a compartment diagram for the spread of Covid-19 disease with the parameters of mask wearing and vaccination first. Then, disease-free equilibrium point, endemic equilibrium point, and Basic Reproduction Number are determined. After that, numerical simulation was carried out. The results of this study indicate that the disease-free equilibrium point is locally asymptotically stable when the Basic Reproduction Number is less than one. Meanwhile, the endemic equilibrium point is locally asymptotically stable when the Basic Reproduction Number is larger than one. In addition, this study also shows that mask wearing and vaccinations reduce the value of Basic Reproduction Number. Keywords : Covid-19; SEIR Model; Equilibrium Point. Keywords : Covid-19; SEIR Model; Equilibrium Point. Corresponding Author : *yaniramdani66@gmail.com Indexed : Garuda, Crossref, Google Scholar DOI : https://doi.org/10.29313/jrm.v3i1.1731 1/12 Shahnaz Afia et al. Model SEIR Penyebaran Covid-19 dengan Parameter Penggunaan Masker Kesehatan,... . A. Pendahuluan Coronavirus disease (Covid-19) merupakan penyakit sistem pernapasan yang disebabkan oleh virus severe acute respiratory syndrome coronavirus 2 (SARS-Cov-2) [1][2]. Sejak kasus penyakit Covid-19 pertama kali ditemukan di Wuhan, Cina pada bulan Desember 2019, penyakit ini telah menyebar secara luas dan menginfeksi jutaan orang di berbagai negara sehingga ditetapkan sebagai pandemi global oleh World Health Organization [3]. Pandemi Covid-19 terjadi di berbagai belahan dunia, tidak terkecuali di Indonesia. Para peneliti dari berbagai bidang mencoba memahami pandemi yang sedang berlangsung ini melalui bidang ilmunya masing-masing. Salah satu bidang ilmu yang dapat berperan serta dalam memahami pandemi ini adalah Matematika melalui model Matematika. Model Matematika merupakan salah satu bidang Matematika yang digunakan untuk mempresentasikan dan menjelaskan berbagai permasalahan yang terjadi di kehidupan sehari-hari. Model Matematika dapat digunakan untuk memahami dinamika penyebaran penyakit melalui model-model epidemiologi. Model kompartemen digunakan untuk mendeskripsikan penularan suatu penyakit. Salah satu model epidemiologi yang dikenal ialah model epidemi SEIR. Pada dasarnya, model epidemi SEIR membagi populasi ke dalam empat kompartemen, yaitu susceptible atau rentan, exposed atau terpapar, infected atau terinfeksi, dan recovered atau sembuh. Dalam berbagai penelitian yang telah dilakukan, model SEIR mengalami pengembangan berupa penambahan kompartemen dan parameter. Penambahan kompartemen dan parameter dilakukan untuk memahami pengaruh dari berbagai tindakan pada dinamika penyebaran penyakit. Pada penelitian ini, dilakukan pembentukan model SEIR menggunakan enam kompartemen dengan parameter penggunaan masker kesehatan dan vaksinasi. Penelitian ini dilakukan untuk mengetahui kestabilan titik ekuilbrium bebas penyakit dan titik ekuilibrium endemik serta pengaruh penggunaan masker kesehatan dan vaksinasi terhadap penyebaran penyakit Covid-19 di Indonesia. B. Metode Penelitian Penelitian ini merupakan penelitian kuantitatif dan kualitatif. Langkah-langkah yang dilakukan dalam penelitian pembentukan model Matematika dari penyebaran penyakit Covid-19 dengan parameter penggunaan masker dan vaksinasi meliputi: (1) Studi Literatur; (2) Pembuatan Asumsi; (3) Konstruksi Model; (4) Penentuan Titik Ekuilibrium dan Basic Reproduction Number; (5) Estimasi Parameter, dan (6) Simulasi Hasil. Asumsi Pembentukan Model Pembuatan asumsi merupakan penyusunan kondisi-kondisi yang menjadi dasar pertimbangan dalam pembentukan model Matematika. Pembuatan asumsi dilakukan untuk menyederhanakan permasalahan yang akan dibuat modelnya agar model Matematika yang dibentuk berada dalam ruang lingkup yang ingin dikaji oleh pembuat model. Asumsi-asumsi pembentukan model SEIR penyebaran Covid-19 dengan parameter penggunaan masker kesehatan dan vaksinasi terdiri dari: (1) Virus penyebab penyakit Covid-19 adalah virus SARS-Cov-2; (2) Populasi tertutup, yaitu ukuran populasi konstan selama periode penelitian di mana tidak terjadi penambahan individu melalui migrasi maupun pengurangan individu melalui emigrasi; (3) Parameter kelahiran dan kematian dalam populasi diasumsikan sama. Hal tersebut berarti jumlah total populasi adalah konstan; (4) Setiap kelompok atau sub populasi dapat mengalami kematian alami atau kematian yang tidak disebabkan oleh penyakit Covid-19; (5) Kematian yang diakibatkan penyakit Covid-19 diabaikan; (6) Parameter vaksinasi menyatakan persentase populasi yang telah melakukan vaksinasi sampai dengan dosis ketiga; (7) Setiap individu berpeluang sama besar untuk melakukan kontak dengan individu lain dalam satu populasi yang berarti populasi dianggap bercampur dengan homogen; (8) Individu baru lahir dan belum melaksanakan vaksinasi hingga dosis ketigaanakan termasuk ke dalam kelompok rentan yang tidak menggunakan masker kesehatan (𝑆1); (9) Individu dalam populasi 𝑁 yang telah divaksin akan termasuk ke dalam kelompok sembuh (𝑅); (10) Individu yang termasuk ke dalam kelompok rentan terhadap penyakit Covid-19 yang menggunakan masker kesehatan (𝑆2) tidak dapat tertular virus penyebab penyakit Covid-19; (11) Individu yang termasuk ke dalam kelompok rentan terhadap penyakit Volume 3, No. 1, Juli 2023 2/12 Jurnal Riset Matematika (JRM) Covid-19 yang menggunakan masker kesehatan (𝑆2) akan termasuk ke dalam kelompok rentan terhadap penyakit Covid-19 yang tidak menggunakan masker kesehatan (𝑆1) apabila berhenti menggunakan masker; (12) Individu dalam kelompok terjangkit penyakit Covid-19 yang menggunakan masker kesehatan (𝐼2) akan termasuk ke dalam kelompok terjangkit penyakit Covid-19 yang tidak menggunakan masker kesehatan (𝐼1) apabila berhenti menggunakan masker; (13) Tidak ada interaksi yang terjadi antara kelompok rentan terhadap penyakit Covid-19 yang menggunakan masker kesehatan (𝑆2) dan kelompok pengguna masker kesehatan yang terjangkit penyakit Covid-19 (𝐼2); (14) Infeksi virus SARS-Cov-2 melalui kontak antara individu rentan terhadap penyakit Covid-19 dengan individu terinfeksi virus SARS-Cov-2; (15) Setiap individu yang terjangkit penyakit Covid-19 dapat sembuh dari penyakit Covid-19; (16) Individu yang dinyatakan sembuh dari penyakit Covid-19 dianggap memiliki kekebalan terhadap penyakit Covid-19 sehingga tidak dapat terjangkit penyakit Covid-19 kembali; (17) Individu yang telah divaksin dianggap memiliki kekebalan terhadap penyakit Covid- 19 sehingga tidak dapat terjangkit penyakit Covid-19. Asumsi Pembentukan Model Variabel-variabel yang digunakan model SEIR penyebaran Covid-19 di Indonesia dengan parameter penggunaan masker kesehatan dan vaksinasi terdapat pada tabel 1. Parameter yang digunakan dalam model penyebaran Covid-19 dengan parameter penggunaan masker dan vaksinasi dapat dilihat pada tabel 2. Tabel 1. Variabel Model SEIR Penyebaran Covid-19 No. Variabel Syarat Keterangan Satuan 1. 𝑆1(𝑡) 𝑆1(𝑡) ≥0 Jumlah individu rentan terhadap penyakit Covid-19 yang tidak menggunakan masker kesehatan pada waktu ke-t. Individu 2. 𝑆2(𝑡) 𝑆2(𝑡) ≥0 Jumlah individu rentan terhadap penyakit Covid-19 yang menggunakan masker kesehatan pada waktu ke-t. Individu 3. 𝐸(𝑡) 𝐸(𝑡) ≥0 Jumlah individu yang terpapar virus korona pada waktu ke-t. Individu 4. 𝐼1(𝑡) 𝐼1(𝑡) ≥0 Jumlah individu terjangkit penyakit Covid-19 yang tidak menggunakan masker kesehatan pada waktu ke-t. Individu 5. 𝐼2(𝑡) 𝐼2(𝑡) ≥0 Jumlah individu terjangkit penyakit Covid-19 yang menggunakan masker kesehatan pada waktu ke-t. Individu 6. 𝑅(𝑡) 𝑅(𝑡) ≥0 Jumlah individu yang sembuh dari penyakit Covid-19 pada waktu ke-t. Individu Tabel 2. Parameter Model SEIR Penyebaran Covid-19 No. Parameter Syarat Keterangan Satuan 1. 𝜇 𝜇≥0 Parameter kelahiran dan kematian alami. Per hari 2. 𝑢1 𝑢1 ≥0 Parameter penggunaan masker kesehatan. Per hari 3. 𝑢2 𝑢2 ≥0 Parameter pelepasan masker kesehatan. Per hari 4. 𝛽 𝛽≥0 Parameter penularan penyakit atau perubahan individu rentan menjadi individu terpapar setelah melakukan kontak dengan individu terinfeksi. Per individu per hari 5. 𝛼 𝛼≥0 Parameter perubahan individu terpapar menjadi individu terinfeksi. Individu per hari 6. 𝛾 𝛾≥0 Parameter kesembuhan individu yang terinfeksi menjadi individu sembuh. Individu per hari Tabel 1. Variabel Model SEIR Penyebaran Covid-19 e-ISSN 2798-6306 | p-ISSN 2808-313X 3/12 hahnaz Afia et al. Model SEIR Penyebaran Covid-19 dengan Parameter Penggunaan Masker Kesehatan,. Lanjutan Tabel 3. Parameter Model SEIR Penyebaran Covid-19 No. Parameter Syarat Keterangan Satuan 7. 𝑣 𝑣≥0 Parameter pemberian vaksinasi kepada individu dalam kelompok rentan. Konstruksi Model Secara skematis, penyebaran Covid-19 di Indonesia dengan penggunaan masker kesehatan dan vaksinasi adalah sebagai berikut: Gambar 1. Diagram Kompartemen Model SEIR Penyebaran Covid-19 di Indonesia dengan Parameter Penggunaan Masker Kesehatan dan Vaksinasi Lanjutan Tabel 3. Parameter Model SEIR Penyebaran Covid-19 No. Parameter Syarat Keterangan Satuan 7. 𝑣 𝑣≥0 Parameter pemberian vaksinasi kepada individu dalam kelompok rentan. Lanjutan Tabel 3. Parameter Model SEIR Penyebaran Covid-19 No. Parameter Syarat Keterangan Satuan 7. 𝑣 𝑣≥0 Parameter pemberian vaksinasi kepada individu dalam kelompok rentan. Asumsi Pembentukan Model Konstruksi Model Secara skematis, penyebaran Covid-19 di Indonesia dengan penggunaan masker kesehatan dan vaksinasi adalah sebagai berikut: Konstruksi Model Secara skematis, penyebaran Covid-19 di Indonesia dengan penggunaan masker kesehatan dan vaksinasi adalah sebagai berikut: Gambar 1. Diagram Kompartemen Model SEIR Penyebaran Covid-19 di Indonesia dengan Parameter Penggunaan Masker Kesehatan dan Vaksinasi Gambar 1. Diagram Kompartemen Model SEIR Penyebaran Covid-19 di Indonesia dengan Parameter Penggunaan Masker Kesehatan dan Vaksinasi Model Matematika yang terbentuk dari diagram kompartemen pada gambar di atas merupakan sistem persamaan diferensial sebagai berikut: 𝑑𝑆1 𝑑𝑡= (1 −𝑣)𝜇𝑁+ 𝑢2𝑆2 −𝑢1𝑆1 −𝛽𝑆1𝐼1 −𝜇𝑆1 (1) 𝑑𝑆2 𝑑𝑡= 𝑢1𝑆1 −𝑢2𝑆2 −𝜇𝑆2 𝑑𝐸 𝑑𝑡= 𝛽𝑆1𝐼1 −𝛼𝐸−𝜇𝐸 𝑑𝐼1 𝑑𝑡= 𝛼𝐸+ 𝑢2𝐼2 −𝑢1𝐼1 −𝛾𝐼1 −𝜇𝐼1 𝑑𝐼2 𝑑𝑡= 𝑢1𝐼1 −𝑢2𝐼2 −𝛾𝐼2 −𝜇𝐼2 𝑑𝑅 𝑑𝑡= 𝑣𝜇𝑁+ 𝛾𝐼1 + 𝛾𝐼2 −𝜇𝑅 (1) Di mana 𝑁(t) merupakan jumlah total populasi pada waktu 𝑡 di mana Di mana 𝑁(t) merupakan jumlah total populasi pada waktu 𝑡 di mana Di mana 𝑁(t) merupakan jumlah total populasi pada waktu 𝑡 di mana 𝑁(𝑡) = 𝑆1(𝑡) + 𝑆2(𝑡) + 𝐸(𝑡) + 𝐼1(𝑡) + 𝐼2(𝑡) + 𝑅(𝑡) (2) 𝑁(𝑡) = 𝑆1(𝑡) + 𝑆2(𝑡) + 𝐸(𝑡) + 𝐼1(𝑡) + 𝐼2(𝑡) + 𝑅(𝑡) (2) (2) Untuk penyederhanaan penulisan, misalkan Untuk penyederhanaan penulisan, misalkan Untuk penyederhanaan penulisan, misalkan Untuk penyederhanaan penulisan, misalkan 𝑁(𝑡) = 𝑁, 𝑆1(𝑡) = 𝑆1, 𝑆2(𝑡) = 𝑆2, 𝐸(𝑡) = 𝐸, 𝐼1(𝑡) = 𝐼1, 𝐼2(𝑡) = 𝐼2, 𝑅(𝑡) = 𝑅 4/12 Volume 3, No. 1, Juli 2023 Jurnal Riset Matematika (JRM) Jurnal Riset Matematika (JRM) Dari sistem (1) diketahui bahwa Dari sistem (1) diketahui bahwa 𝑑𝑁 𝑑𝑡= 𝑑𝑆1 𝑑𝑡+ 𝑑𝑆2 𝑑𝑡+ 𝑑𝐸 𝑑𝑡+ 𝑑𝐼1 𝑑𝑡+ 𝑑𝐼2 𝑑𝑡+ 𝑑𝑅 𝑑𝑡 𝑑𝑁 𝑑𝑡= 𝜇𝑁−𝜇𝑆1 −𝜇𝑆2 −𝜇𝐸−𝜇𝐼1 −𝜇𝐼2 −𝜇𝑅 𝑑𝑁 𝑑𝑡= 𝜇𝑁−𝜇(𝑆1 + 𝑆2 + 𝐸+ 𝐼1 + 𝐼2 + 𝑅) 𝑑𝑁 𝑑𝑡= 𝜇𝑁−𝜇𝑁 𝑑𝑁 𝑑𝑡= 0 Hasil tersebut menunjukkan bahwa model Matematika yang dibentuk telah memenuhi asumsi jumlah total populasi adalah konstan. Sistem (1) dapat dibentuk ke dalam model non dimensional [4]. Asumsi Pembentukan Model Untuk menyederhanakan sistem persaaman tersebut, proporsi jumlah individu dalam masing-masing sub populasi dapat dinyatakan sebagai berikut: 𝑠1 = 𝑆1 𝑁, 𝑠2 = 𝑆2 𝑁, 𝑒= 𝐸 𝑁, 𝑖1 = 𝐼1 𝑁, 𝑖2 = 𝐼2 𝑁, 𝑟= 𝑅 𝑁 (3) (3) Dari persamaan (3) dapat diperoleh Dari persamaan (3) dapat diperoleh Dari persamaan (3) dapat diperoleh 𝑠1 + 𝑠2 + 𝑒+ 𝑖1 + 𝑖2 + 𝑟= 𝑆1 𝑁+ 𝑆2 𝑁+ 𝐸 𝑁+ 𝐼1 𝑁+ 𝐼2 𝑁+ 𝑅 𝑁= 1 Berdasarkan persamaan (3), sistem (1) dapat dibentuk ke dalam model non dimensional sehingga menjadi 𝑑𝑠1 𝑑𝑡= (1 −𝑣)𝜇+ 𝑢2𝑠2 −𝑢1𝑠1 −𝛽𝑠1𝑖1 −𝜇𝑠1 (4) 𝑑𝑠2 𝑑𝑡= 𝑢1𝑠1 −𝑢2𝑠2 −𝜇𝑠2 𝑑𝑒 𝑑𝑡= 𝛽𝑠1𝑖1 −𝛼𝑒−𝜇𝑒 𝑑𝑖1 𝑑𝑡= 𝛼𝑒+ 𝑢2𝑖2 −𝑢1𝑖1 −𝛾𝑖1 −𝜇𝑖1 𝑑𝑖2 𝑑𝑡= 𝑢1𝑖1 −𝑢2𝑖2 −𝛾𝑖2 −𝜇𝑖2 𝑑𝑟 𝑑𝑡= 𝑣𝜇+ 𝛾𝑖1 + 𝛾𝑖2 −𝜇𝑟 (4) (4) Selanjutnya, dapat dilihat pada sistem persamaan (4) bahwa variabel 𝑟 tidak berpengaruh pada persamaan laju perubahan jumlah individu terjadap waktu dalam sub populasi lain. Oleh karena itu, persamaan 𝑟 dapat diabaikan dari sistem untuk sementara sehingga sistem persamaan (4) dapat ditulis menjadi e-ISSN 2798-6306 | p-ISSN 2808-313X 5/12 Shahnaz Afia et al. Model SEIR Penyebaran Covid-19 dengan Parameter Penggunaan Masker Kesehatan,... . 𝑑𝑠1 𝑑𝑡= (1 −𝑣)𝜇+ 𝑢2𝑠2 −𝑢1𝑠1 −𝛽𝑠1𝑖1 −𝜇𝑠1 (5) 𝑑𝑠2 𝑑𝑡= 𝑢1𝑠1 −𝑢2𝑠2 −𝜇𝑠2 𝑑𝑒 𝑑𝑡= 𝛽𝑠1𝑖1 −𝛼𝑒−𝜇𝑒 𝑑𝑖1 𝑑𝑡= 𝛼𝑒+ 𝑢2𝑖2 −𝑢1𝑖1 −𝛾𝑖1 −𝜇𝑖1 𝑑𝑖2 𝑑𝑡= 𝑢1𝑖1 −𝑢2𝑖2 −𝛾𝑖2 −𝜇𝑖2 (5) Sistem persamaan (5) merupakan sistem persamaan diferensial non linear yang menggambarkan penyebaran penyakit Covid-19 dengan parameter penggunaan masker kesehatan dan vaksinasi. Titik Ekuilibrium dan Basic Reproduction Number Titik ekuilibrium merupakan titik yang nilainya tidak berubah terhadap waktu. Titik ekuilibrium diperoleh apabila laju perubahan jumlah individu terhadap waktu pada setiap sub populasi adalah sama dengan nol sehingga dari sistem persamaan (4) diperoleh (1 −𝑣)𝜇+ 𝑢2𝑠2 −𝑢1𝑠1 −𝛽𝑠1𝑖1 −𝜇𝑠1 = 0 (5) 𝑢1𝑠1 −𝑢2𝑠2 −𝜇𝑠2 = 0 (6) 𝛽𝑠1𝑖1 −𝛼𝑒−𝜇𝑒= 0 (7) 𝛼𝑒+ 𝑢2𝑖2 −𝑢1𝑖1 −𝛾𝑖1 −𝜇𝑖1 = 0 (8) 𝑢1𝑖1 −𝑢2𝑖2 −𝛾𝑖2 −𝜇𝑖2 = 0 (9) (9) Titik Ekuilibrium Bebas Penyakit Titik Ekuilibrium Bebas Penyakit Titik ekuilibrium bebas penyakit diperoleh pada kondisi dimana tidak terdapat individu yang terjangkit penyakit dalam populasi atau 𝑖1 = 𝑖2 = 0. Dengan kata lain, kondisi tersebut menunjukkan tidak terjadinya penularan penyakit dalam populasi. Melalui proses substitusi, diperoleh titik ekuilibrium bebas penyakit 𝑃1(𝑠1, 𝑠2, 𝑒, 𝑖1, 𝑖2) dengan 𝑠1 = (1 −𝑣)(𝜇+ 𝑢2) 𝜇+ 𝑢1 + 𝑢2 𝑠2 = 𝑢1 ((1 −𝑣)(𝜇+ 𝑢2) 𝜇+ 𝑢1 + 𝑢2 ) 𝜇+ 𝑢2 𝑒= 0, 𝑖1 = 0, 𝑖2 = 0 dengan Basic Reproduction Number e-ISSN 2798-6306 | p-ISSN 2808-313X e-ISSN 2798-6306 | p-ISSN 2808-313X 7/12 naz Afia et al. Model SEIR Penyebaran Covid-19 dengan Parameter Penggunaan Masker Kesehatan,... . Pencarian nilai eigen dari matriks 𝑇𝛴−1 dimana basic reproducion number merupakan radius spektral atau nilai eigen terbesar dari matriks 𝑇𝛴−1 sehinga diperoleh 𝑅0 = 𝛼𝛽(1 −𝑣)(𝜇+ 𝑢2)(𝜇+ 𝑢2 + 𝛾) (𝜇+ 𝑢1 + 𝑢2)(𝜇+ 𝛼)(𝜇+ 𝛾)(𝜇+ 𝑢1 + 𝑢2 + 𝛾) Basic Reproduction Number Basic Reproduction Number Basic Reproduction Number atau bilangan reproduksi dasar menyatakan jumlah individu rentan yang dapat terinfeksi penyakit setelah melakukan kontak dengan individu yang terinfeksi [5]. Besaran Basic Reproduction Number tidak memiliki dimensi dan bernilai ambang satu (𝑅0 = 1). Berikut kemungkinan-kemungkinan yang berkaitan dengan nilai 𝑅0 beserta artinya: (1) Nilai 𝑅0 > 1 berarti individu terinfeksi menularkan penyakit kepada lebih dari satu individu rentan selama masa infeksinya sehingga tercipta kondisi wabah. Volume 3, No. 1, Juli 2023 6/12 Jurnal Riset Matematika (JRM) Jurnal Riset Matematika (JRM) Titik ekuilibrium endemik bersifat stabil asimtotik lokal saat 𝑅0 > 1 [6]; (2) Nilai 𝑅0 < 1 berarti interaksi antara individu terinfeksi dan individu rentan tidak menghasilkan penularan sehingga tercipta kondisi bebas penyakit. Titik ekuilibrium bebas penyakit bersifat stabil asimtotik lokal saat 𝑅0 < 1 [6]. Titik ekuilibrium endemik bersifat stabil asimtotik lokal saat 𝑅0 > 1 [6]; (2) Nilai 𝑅0 < 1 berarti interaksi antara individu terinfeksi dan individu rentan tidak menghasilkan penularan sehingga tercipta kondisi bebas penyakit. Titik ekuilibrium bebas penyakit bersifat stabil asimtotik lokal saat 𝑅0 < 1 [6]. Penentuan Basic Reproduction Number dari model penyebaran Covid-19 dengan parameter penggunaan masker kesehatan dan vaksinasi pada sistem (4) dilakukan menggunakan metode next generation matrices dengan langkah-langkah sebagai berikut: Pembentukan sub sistem terinfeksi, Sub sistem terinfeksi terdiri dari persamaan-persamaan yang merepresentasikan terjadinya kasus terinfeksi dan perubahan kompartemen terinfeksi dalam sistem persamaan. Dari sistem (4), persamaan-persamaan yang membentuk subsistem terinfeksi tersebut terdiri dari persamaan- persamaan berikut 𝑑𝑒 𝑑𝑡= 𝛽𝑠1𝑖1 −𝛼𝑒−𝜇𝑒 𝑑𝑖1 𝑑𝑡= 𝛼𝑒+ 𝑢2𝑖2 −𝑢1𝑖1 −𝛾𝑖1 −𝜇𝑖1 𝑑𝑖2 𝑑𝑡= 𝑢1𝑖1 −𝑢2𝑖2 −𝛾𝑖2 −𝜇𝑖2 𝑑𝑒 𝑑𝑡= 𝛽𝑠1𝑖1 −𝛼𝑒−𝜇𝑒 𝑑𝑖1 𝑑𝑡= 𝛼𝑒+ 𝑢2𝑖2 −𝑢1𝑖1 −𝛾𝑖1 −𝜇𝑖1 𝑑𝑖2 𝑑𝑡= 𝑢1𝑖1 −𝑢2𝑖2 −𝛾𝑖2 −𝜇𝑖2 Linearisasi sub sistem terinfeksi di sekitar titik ekuilibrium bebas penyakit sehingga diperoleh matriks Jacobian. Linearisasi sub sistem terinfeksi dilakukan di sekitar titik ekuilibrium bebas penyakit sehingga diperoleh matriks Jacobian sebagai berikut 𝐽(𝑠1,𝑠2,𝑒,𝑖1,𝑖2) = [ −(𝛼+ 𝜇) 𝛽(1 −𝑣)(𝜇+ 𝑢2) 𝜇+ 𝑢1 + 𝑢2 0 𝛼 −(𝑢1 + 𝛾+ 𝜇) 𝑢2 0 𝑢1 −(𝑢2 + 𝛾+ 𝜇)] Dekomposisi matriks Jacobian menjadi matriks 𝑇 dan matriks 𝛴 dimana Dekomposisi matriks Jacobian menjadi matriks 𝑇 dan matriks 𝛴 dimana 𝐽(𝑠1,𝑠2,𝑒,𝑖1,𝑖2) = 𝑇+ 𝛴. 𝐽(𝑠1,𝑠2,𝑒,𝑖1,𝑖2) = 𝑇+ 𝛴. Matriks 𝑇 merupakan matriks transmisi yang menggambarkan penularan penyakit atau munculnya infeksi baru. Sementara itu, matriks 𝛴 merupakan matriks transisi yang menggambarkan perubahan pada kompartemen terinfeksi. Titik Ekuilibrium Endemik Titik ekuilibrium endemik diperoleh pada kondisi dimana 𝑖1 > 0 dan 𝑖2 > 0 atau terdapat individu terjangkit penyakit dalam populasi. Hal tersebut dapat diartikan juga bahwa terjadi penyebaran penyakit dalam populasi. Melalui proses substitusi, diperoleh titik ekuilibrium endemik yaitu 𝑃2(𝑠1∗, 𝑠2∗, 𝑒∗, 𝑖1 ∗,𝑖2 ∗) dengan dengan 𝑠1∗= (𝛼+ 𝜇)(𝛾+ 𝜇)(𝛾+ 𝜇+ 𝑢1+𝑢2) 𝛼𝛽(𝑢2 + 𝛾+ 𝜇) 𝑠2∗= 𝑢1𝑠1∗ 𝜇+ 𝑢2 𝑒∗= 𝛽𝑠1∗𝑖1 ∗ 𝛼+ 𝜇 𝑖1 ∗= 𝜇 𝛽(𝛼𝛽(𝑢2 + 𝛾+ 𝜇)(1 −𝑣)(𝑢2 + 𝜇) −(𝑢1 + 𝑢2 + 𝜇)(𝛾+ 𝜇)(𝛾+ 𝜇+ 𝑢1 + 𝑢2)(𝛼+ 𝜇) (𝛾+ 𝜇)(𝛾+ 𝜇+ 𝑢1 + 𝑢2)(𝛼+ 𝜇)(𝜇+ 𝑢2) ) 𝑖2 ∗= 𝑢1𝑖1 ∗ 𝑢2 + 𝛾+ 𝜇 𝜇 𝑖1 ∗= 𝜇 𝛽(𝛼𝛽(𝑢2 + 𝛾+ 𝜇)(1 −𝑣)(𝑢2 + 𝜇) −(𝑢1 + 𝑢2 + 𝜇)(𝛾+ 𝜇)(𝛾+ 𝜇+ 𝑢1 + 𝑢2)(𝛼+ 𝜇) (𝛾+ 𝜇)(𝛾+ 𝜇+ 𝑢1 + 𝑢2)(𝛼+ 𝜇)(𝜇+ 𝑢2) ) 𝑖2 ∗= 𝑢1𝑖1 ∗ 𝑢2 + 𝛾+ 𝜇 Simulasi Numerik Sebelum dilakukan simulasi numerik menggunakan software Maple 18, dilakukan penentuan nilai awal variabel serta estimasi nilai-nilai parameter yang akan digunakan dalam proses simulasi numerik. Tabel 3 menampilkan nilai awal variabel Tabel 4. Nilai Awal Variabel Variabel 𝑁(0) 𝑠1(0) 𝑠2(0) 𝑒(0) 𝑖1(0) 𝑖2(0) Nilai Awal 275800000 0.6 0.5 0.3 0.15 0.2 Sumber [7] Asumsi Asumsi Asumsi Asumsi Asumsi Tabel 4 menampilkan estimasi nilai parameter 𝜇, 𝛽, 𝛼, dan 𝛾 Tabel 4. Nilai Awal Variabel Variabel 𝑁(0) 𝑠1(0) 𝑠2(0) 𝑒(0) 𝑖1(0) 𝑖2(0) Nilai Awal 275800000 0.6 0.5 0.3 0.15 0.2 Sumber [7] Asumsi Asumsi Asumsi Asumsi Asumsi Tabel 4 menampilkan estimasi nilai parameter 𝜇, 𝛽, 𝛼, dan 𝛾 Tabel 4 menampilkan estimasi nilai parameter 𝜇, 𝛽, 𝛼, dan 𝛾 Tabel 5. Estimasi Nilai Parameter 𝜇, 𝛽, 𝛼, dan 𝛾 Parameter 𝜇 𝛽 𝛼 𝛾 Nilai 6.25 × 10−3 0.62 × 10−8 0.1972387 0.06578947 Sumber [8] [8] [9] [9] Tabel 5. Estimasi Nilai Parameter 𝜇, 𝛽, 𝛼, dan 𝛾 8/12 Volume 3, No. 1, Juli 2023 Volume 3, No. 1, Juli 2023 Jurnal Riset Matematika (JRM) Tabel 5 menampilkan estimasi nilai parameter 𝑢1, 𝑢2, dan 𝑣 Tabel 5 menampilkan estimasi nilai parameter 𝑢1, 𝑢2, dan 𝑣 Tabel 6. Estimasi Nilai Parameter 𝑢1, 𝑢2, dan 𝑣 Parameter 𝑢1 𝑢2 𝑣 Nilai 1 70% 30% 10% Nilai 2 30% 70% 50% Sumber Asumsi Asumsi Asumsi Tabel 6. Estimasi Nilai Parameter 𝑢1, 𝑢2, dan 𝑣 Tabel 6. Estimasi Nilai Parameter 𝑢1, 𝑢2, dan 𝑣 Parameter 𝑢1 𝑢2 𝑣 Nilai 1 70% 30% 10% Nilai 2 30% 70% 50% Sumber Asumsi Asumsi Asumsi Hasil simulasi numerik untuk nilai parameter 𝑢1 = 70%, 𝑢2 = 30%, dan 𝑣= 10% dapat dilihat pada gambar 2 berikut Gambar 2. Titik Ekuilibrium Bebas Penyakit untuk 𝑢1 = 70%, 𝑢2 = 30%, dan 𝑣= 10% Gambar 2. Titik Ekuilibrium Bebas Penyakit untuk 𝑢1 = 70%, 𝑢2 = 30%, dan 𝑣= 10% Nilai Basic Reproduction Number untuk nilai parameter 𝑢1 = 70%, 𝑢2 = 30%, dan 𝑣= 10% diperoleh sebesar 7.929831694 × 10−9 di mana 𝑅0 < 1. Dari hasil simulasi numerik pada gambar 2 di atas, dapat diketahui bahwa kondisi stabil asimtotik lokal terjadi pada nilai proporsi 𝑠1 = 0.2739130435, 𝑠2 = 0.6260869565, 𝑒= 0, 𝑖1 = 0, 𝑖2 = 0, dan 𝑟= 0.1. Jumlah masing-masing sub populasi adalah 𝑆1 = 75545217, 𝑆2 = 172674783, 𝐸= 0, 𝐼1 = 0, 𝐼2 = 0, dan nilai 𝑅= 27580000. Hasil simulasi numerik untuk nilai parameter 𝑢1 = 30%, 𝑢2 = 70%, dan 𝑣= 50% dapat dilihat pada gambar 3 berikut Gambar 3. Titik Ekuilibrium Bebas Penyakit untuk 𝑢1 = 30%, 𝑢2 = 70%, dan 𝑣= 50% Gambar 3. Titik Ekuilibrium Bebas Penyakit untuk 𝑢1 = 30%, 𝑢2 = 70%, dan 𝑣= 50% e-ISSN 2798-6306 | p-ISSN 2808-313X 9/12 Shahnaz Afia et al. Model SEIR Penyebaran Covid-19 dengan Parameter Penggunaan Masker Kesehatan,... . Nilai Basic Reproduction Number untuk nilai parameter 𝑢1 = 30%, 𝑢2 = 70%, dan 𝑣= 50% diperoleh sebesar 2.108260708 × 10−8 di mana 𝑅0 < 1. Dari hasil simulasi numerik pada gambar 3 di atas, dapat diketahui bahwa kondisi stabil asimtotik lokal terjadi pada nilai proporsi 𝑠1 = 0.3509316770, 𝑠2 = 0.1490683230, 𝑒= 0, 𝑖1 = 0, 𝑖2 = 0, dan 𝑟= 0.5. Jumlah masing-masing sub populasi adalah 𝑆1 = 96786957, 𝑆2 = 41113043, 𝐸= 0, 𝐼1 = 0, 𝐼2 = 0, dan 𝑅= 137900000. Tabel 5. Estimasi Nilai Parameter 𝜇, 𝛽, 𝛼, dan 𝛾 Dari hasil simulasi numerik yang terlihat pada gambar 2 dan gambar 3, dapat diketahui bahwa titik ekuilibrium bebas penyakit stabil asimtotik lokal pada saat nilai 𝑅0 < 1. Hal tersebut dapat diartikan bahwa penyakit akan hilang dari populasi pada kondisi-kondisi tertentu yang menyebabkan 𝑅0 < 1. Pada kenyataannya, parameter 𝛽 sulit untuk diestimasi karena penularan suatu penyakit dalam suatu populasi dipengaruhi oleh faktor-faktor seperti manusia (usia dan kondisi sosial ekonomi), lingkungan (cuaca, kondisi udara, dan budaya), dan waktu (waktu dan durasi penelitian) [10]. Pada simulasi numerik berikutnya, parameter 𝛽 diasumsikan adalah sebesar 𝛽= 0.8 sehingga diperoleh hasil simulasi numerik untuk nilai parameter 𝑢1 = 70%, 𝑢2 = 30%, dan 𝑣= 10% dapat dilihat pada gambar 4 berikut Gambar 4. Titik Ekuilibrium Endemik untuk 𝑢1 = 70%, 𝑢2 = 30%, dan 𝑣= 10% Gambar 4. Titik Ekuilibrium Endemik untuk 𝑢1 = 70%, 𝑢2 = 30%, dan 𝑣= 10% Nilai Basic Reproduction Number untuk nilai parameter 𝑢1 = 70%, 𝑢2 = 30%, dan 𝑣= 10% diperoleh sebesar 1.023204090 di mana 𝑅0 > 1. Dari hasil simulasi numerik pada gambar 4 di atas, dapat diketahui bahwa kondisi stabil asimtotik lokal terjadi pada nilai proporsi 𝑠1 = 0.2677012791, 𝑠2 = 0.6118886380, 𝑒= 0.0006268801098, 𝑖1 = 0.0005956406851 𝑖2 = 0.001120710336, dan 𝑟= 0.1180668518. Jumlah masing-masing sub populasi adalah 𝑆1 = 73832013, 𝑆2 = 168758886, 𝐸= 172894, 𝐼1 = 164278, 𝐼2 = 309092, dan 𝑅= 32562838. Hasil simulasi numerik untuk nilai parameter 𝑢1 = 30%, 𝑢2 = 70%, dan 𝑣= 50% dapat dilihat pada gambar 5 berikut Gambar 5. Titik Ekuilibrium Endemik untuk 𝑢1 = 30%, 𝑢2 = 70%, dan 𝑣= 50% Gambar 5. Titik Ekuilibrium Endemik untuk 𝑢1 = 30%, 𝑢2 = 70%, dan 𝑣= 50% Volume 3, No. 1, Juli 2023 10/12 Jurnal Riset Matematika (JRM) Jurnal Riset Matematika (JRM) Nilai Basic Reproduction Number untuk nilai parameter 𝑢1 = 30%, 𝑢2 = 70%, dan 𝑣= 50% diperoleh sebesar 2.720336399 di mana 𝑅0 > 1. Dari hasil simulasi numerik pada gambar 5 di atas, dapat diketahui bahwa kondisi stabil asimtotik lokal terjadi pada nilai proporsi 𝑠1 = 0.1290030443, 𝑠2 = 0.05479775333, 𝑒= 0.009711816985, 𝑖1 = 0.0191420908, 𝑖2 = 0.007441022056, dan 𝑟= 0.7798971542. Jumlah masing-masing sub populasi adalah 𝑆1 = 35579040, 𝑆2 = 15113220, 𝐸= 2678519, 𝐼1 = 5281352, 𝐼2 = 2052234, 𝑅= 215095635. Tabel 5. Estimasi Nilai Parameter 𝜇, 𝛽, 𝛼, dan 𝛾 Berdasarkan hasil simulasi numerik yang terlihat pada gambar 4 dan gambar 5, dapat diketahui bahwa titik ekuilibrium endemik stabil asimtotik lokal pada saat nilai 𝑅0 > 1. Hasil tersebut dapat diartikan bahwa apabila kondisi-kondisi dalam populasi menyebabkan nilai 𝑅0 > 1, maka penyakit akan tetap ada dalam populasi dan akan menjadi endemik. D. Kesimpulan Dari penjabaran hasil di atas, dapat disimpulkan bahwa (1) Jika 𝑅0 < 1, maka titik ekuilibrium bebas penyakit bersifat stabil asimtotik lokal. Dengan kata lain, penyakit akan hilang dari populasi pada kondisi- kondisi yang menyebabkan nilai 𝑅0 < 1; (2) Jika 𝑅0 > 1, maka titik ekuilibrium endemik bersifat stabil asimtotik lokal. Hal tersebut dapat diartikan bahwa penularan penyakit akan tetap terjadi dalam populasi, penyakit tetap ada dan tidak hilang dalam populasi sehingga terjadi kondisi endemik pada kondisi-kondisi yang menyebabkan nilai 𝑅0 > 1; (3) Penggunaan masker kesehatan dan pelaksanaan vaksinasi berperan dalam penurunan nilai Basic Reproduction Number. Hasil yang diperoleh dapat diartikan bahwa penggunaan masker kesehatan dan pelaksanaan vaksinasi dapat menekan penyebaran penyakit Covid-19 dalam populasi. [10] A. Aschengrau and G. R. Seage, Essentials of Epidemiology in Public Health. 2020. Shahnaz Afia et al. Model SEIR Penyebaran Covid-19 dengan Parameter Penggunaan Masker Kesehatan,... . Daftar Pustaka [1] S. Kashte, A. Gulbake, S. F. El, A. Iii, and A. Gupta, “COVID - 19 vaccines : rapid development , implications , challenges and future prospects Indian Council of Medical Research,” Human Cell, vol. 34, no. 3. pp. 711–733, 2021. [2] M. A. Alfiansyah and E. Kurniati, “Analisis Portofolio Saham Syariah di Masa Pandemi Covid-19 dengan Mengunakan Multi Indeks Model,” Jurnal Riset Matematika, pp. 30–36, Jul. 2022, doi: 10.29313/jrm.v2i1.795. [3] A. Gupta, S. Kashte, M. Gupta, H. C. Rodriguez, S. S. Gautam, and S. Kadam, “Mesenchymal stem cells and exosome therapy for COVID-19: current status and future perspective,” Hum Cell, vol. 33, no. 4, pp. 907–918, 2020, doi: 10.1007/s13577-020-00407-w. [4] M. Manaqib, I. Fauziah, and M. Mujiyanti, “Mathematical Model for MERS-COV Disease Transmission with Medical Mask Usage and Vaccination,” InPrime: Indonesian Journal of Pure and Applied Mathematics, vol. 1, no. 2, pp. 97–109, 2019, doi: 10.15408/inprime.v1i2.13553. [5] F. Brauer, C. Castillo-Chavez, and Z. Feng, Mathematical Models in Epidemiology. New York: Springer, 2019. doi: 10.1007/978-1-4939-9828-9_17. [6] C. Castillo-Chavez, Z. Feng, and W. Huang, “On The Computation of R0 and Its Role on Global Stability,” no. February, 2001. [7] BPS, “Jumlah Penduduk Pertengahan Tahun (Ribu Jiwa), 2020-2022.” https://www.bps.go.id/indicator/12/1975/1/jumlah-penduduk-pertengahan-tahun.html [8] S. Annas, Muh. I. Pratama, Muh. Rifandi, W. Sanusi, and S. Side, “Stability analysis and numerical simulation of SEIR model for pandemic COVID-19 spread in Indonesia,” no. January, 2020. [9] J. A. Spencer et al., “Epidemiological parameter review and comparative dynamics of influenza, respiratory syncytial virus, rhinovirus, human coronavirus, and adenovirus,” medRxiv, p. 2020.02.04.20020404, 2020. e-ISSN 2798-6306 | p-ISSN 2808-313X 11/12 [10] 12/12 Volume 3, No. 1, Juli 2023 Volume 3, No. 1, Juli 2023
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Revealing low-temperature plasma efficacy through a dose-rate assessment by DNA damage detection combined with machine learning models
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www.nature.com/scientificreports OPEN Revealing low‑temperature plasma efficacy through a dose‑rate assessment by DNA damage detection combined with machine learning models Amal Sebastian1,2, Diana Spulber1,2,3, Aliaksandra Lisouskaya1 & Sylwia Ptasinska1,2* Low-temperature plasmas have quickly emerged as alternative and unconventional types of radiation that offer great promise for various clinical modalities. As with other types of radiation, the therapeutic efficacy and safety of low-temperature plasmas are ubiquitous concerns, and assessing their dose rates is crucial in clinical settings. Unfortunately, assessing the dose rates by standard dosimetric techniques has been challenging. To overcome this difficulty, we proposed a dose-rate assessment framework that combined the predictive modeling of plasma-induced damage in DNA by machine learning with existing radiation dose-DNA damage correlations. Our results indicated that low-temperature plasmas have a remarkably high dose rate that can be tuned by various process parameters. This attribute is beneficial for inducing radiobiological effects in a more controllable manner. Low-temperature plasmas (LTPs), generated from an electrical discharge at atmospheric pressure and room temperature, are reservoirs of diverse physical and chemical components that can be delivered to and significantly affect any biological target. The reactive ability and tunability of plasma properties have triggered a surge in scientific interest in basic and applied interdisciplinary research on LTPs. In their applications, LTPs have been integrated into modern strategies for medical treatments in which plasma can act as a unique source of ­radiation1–3. The potential of LTPs now extends to the inactivation of the SARS-CoV-2 v­ irus4–6, in addition to its already proven clinical efficacy in cancer t­ herapy7–9 and wound h ­ ealing10,11. One critical aspect that dictates the therapeutic efficacy and safety of irradiation is the dose rate, which is the radiation energy absorbed per unit of mass of the target within a unit of time. The rate spans an extensive range of values of grays per second (Gy/s) in medical ­settings12. Different radiation dose rates are deliberately used for different medical purposes because there is a strong correlation between the dose-rate level and the biological effects, such as cell survival, DNA damage, and gene e­ xpression13. In practice, the dose rate of the specific type of radiation is measured by detectors or dosimeters, or calculated, or both. Different types of dosimeters are used depending on several factors, such as the nature of the radiation, the dosimeter’s physical form, and the mechanisms employed to detect the dosimeter’s response to radiation. For example, chemical dosimeters, such as the Fricke dosimeter, are used as a primary standard of the dose absorbed in water and are valid to calibrate the absorbed dose in liquids, or the so-called water-equivalent dose. If potential health effects need to be assessed, a biodosimeter such as the alanine dosimeter is used because its composition is similar to living tissue. Thus, the so-called tissue-equivalent dose can be obtained with this type of dosimetry. A dosimeter is chosen according to its properties that evolve as a function of the dose rate delivered to the target exposed to ionizing radiation. Traditional chemical ­dosimetry13–17 and b ­ iodosimeters18 have been employed to assess the radiation dose from LTPs. However, they were mostly limited to quantifying the specific species typically generated from water radiolysis (Fricke dosimetry) and persistent radicals derived from the amino acid (alanine dosimetry). The properties of LTPs, and, therefore, the physical, chemical, and biological responses resulting from its radiation, can be combined and tuned by changing numerous plasma process parameters, such as the type of 1 Radiation Laboratory, University of Notre Dame, Notre Dame, IN 46556, USA. 2Department of Physics and Astronomy, University of Notre Dame, Notre Dame, IN 46556, USA. 3Department of Applied and Computational Mathematics and Statistics, University of Notre Dame, Notre Dame, IN 46556, USA. *email: sptasins@nd.edu Scientific Reports | (2022) 12:18353 | https://doi.org/10.1038/s41598-022-21783-3 1 Vol.:(0123456789) www.nature.com/scientificreports/ electrical discharge, pulse voltage characteristics, irradiation time, composition of the feed gas and its flow rate, and even ambient conditions, to name a ­few19–23. Another methodology used the equivalent total oxidation potential, which relies on all reactive oxygen and nitrogen species and UV emissions produced by LTP to determine the plasma ­dose24. Thus, in the context of LTP radiation, which results in various effects, there are limitations and uncertainties related to the usage of a specific dosimeter to measure the plasma dose rate. Moreover, in contrast to other types of radiation, LTP has a complex composition of species, in which there is a synergistic interplay between plasma energetics and chemistry. This restricts the possible computational methods that can be used to calculate the plasma dose rate as conventionally defined in radiation research. Therefore, new strategies for the routine determination of delivered plasma doses remain a challenge, and it is an emerging need to translate LTP applications from lab-based research into clinical ­treatment3,9,25. In this work, we developed an innovative strategy by building a supervised machine learning (ML) framework that incorporated an extensive experimental database obtained in our laboratory, literature-based dose rates reported for different types of radiation, and specific deep learning algorithms for generating physically consistent predictive models. The framework consisted of a task workflow that aimed to predict the plasma dose rate from the extent of DNA damage, an indicator of the biological efficacy of LTP, which occurred at specific plasma parameters. The workflow involved finding the irradiation time that corresponded to the extent of DNA damage in the aqueous solution induced by LTP and then comparing it with those times obtained from the correlation between absorbed dose and aqueous DNA damage induced by other known types of radiation. Thus, the dose rate for LTP modeled at any combination of plasma process parameters would allow us to assess the ability of plasma to offer competent therapeutic efficacy with ensured radiation ­safety14,26–29. We also measured the LTP dose rates using two traditional dosimeters at a given set of process parameters and compared the values obtained with those computed using the framework. Results Generation of predictive models and LTP dose‑rate extraction. First, we generated a robust predictive model that provided the extent of plasma-induced DNA damage for a given set of process parameters. The experimental data used to create the predictive model were acquired through the approach of design of experiments (DoE) using a helium-fed LTP source and the plasmid DNA as a biomolecular ­target20,22 (see Supplementary Information (SI) Fig. S1). For the DoE, we assessed the impact of four crucial LTP process parameters, such as the applied voltage, frequency, irradiation time, and feed gas flow rate, on plasma-induced DNA damage which we analyzed using electrophoresis (Fig. S2, Table S1). The data obtained and incorporated into the DoE matrix were split into training and testing data, and predictive modeling was implemented following the standard supervised ML workflow (Fig. S3). The data distribution for the DNA damage (Fig. S4) revealed many rare values, most of which corresponded to DNA damage at relatively short irradiation times. The rare values that correspond to the minority data were oversampled at the refining stage of the ML algorithm model (Fig. S5) using the synthetic minority oversampling ­algorithm30 (Fig. S6). Our experimental studies showed an increase in the extent of DNA damage with longer irradiation times for all combinations of other process parameters (Fig. S7). As expected, this occurred due to more interactions of plasma species, especially radicals with the t­ arget9. This physical phenomenon showed a linear dependence in a specific time regime, after which a slower accumulation of damage appeared. Therefore, to develop predictive models that obey this time-dependence correlation, we considered a physics-guided neural network (PGNN)31, which is a sophisticated deep learning algorithm based on an artificial neural network model (Fig. 1a). The implemented PGNN incorporated a physical loss function (Fig. 1a) that captured any violation in the data that showed any deviation from this time dependence. Then, we evaluated the test data set using the cross-validated model acquired from hyperparameter optimization (Fig. S5). The test data evaluation scores and cross-validation (CV) scores for PGNN, as well as those for other implemented ML algorithms, are summarized in Fig. 1b,c. Based on these scores, we identified three algorithms with the best performance for the predictive model: a gradient boosting regressor (GBR); support vector regression (SVR), and PGNN. However, our further inspection indicated that, although GBR and SVR offer impressive CV and evaluation performance, they fail to preserve the physical consistency for irradiation times shorter than 10 s and longer than 40 s, respectively (Fig. 1d,e, Fig. S8). In contrast, PGNN, in addition to providing the best scores (Fig. 1f), obeys the physical consistency for time dependence (Fig. 1d,e). Thus, PGNN was selected and used as a predictive model for the next task of the framework, which was to extract the dose rate for LTP radiation. Next, we created a LTP dose-rate extraction framework that combined the predictive model and the correlation between the absorbed dose and radiation-induced DNA damage (hereafter denoted as dose-DNA damage) for particulate and electromagnetic radiation, including electrons, ions, gamma rays, X-rays, and UV rays (Fig. S9). Based on the initial assumption that these dose-DNA damage correlations corresponded to the extent of DNA damage for LTP radiation, we collected the dose-DNA damage data from the rich body of literature reported over decades by several research groups (see Methods), and the data for plasma-induced DNA damage were systematically measured in our laboratory. In this task, we generated an irradiation time finder (ITF) console, which predicted the irradiation time in which LTP will cause the same extent of DNA damage as other types of radiation. For example, Fig. 2 shows the workflow that we implemented to find the dose rate for LTP from the data in the existing literature for dose-DNA damage for gamma rays (see Methods). These data were then fed into the ITF console, which operated by blending the predictive model with the dose database. Specifically, it provided the irradiation time (for LTP radiation, at a given set of three process parameters: voltage, frequency, and flow rate), which is the time at which plasma produced the equivalent extent of DNA damage (Fig. 2a) corresponding to the highlighted point in the dose-DNA damage database (Fig. 2b). Then, following Scientific Reports | Vol:.(1234567890) (2022) 12:18353 | https://doi.org/10.1038/s41598-022-21783-3 2 www.nature.com/scientificreports/ Figure 1.  Overview of the predictive modeling. (a) Schematic diagram of the implementation of PGNN. Summary of evaluation scores on the test data (b) and cross-validation scores (c) for the different ML models. The metrics include root-mean-squared error (RMSE) and mean absolute error (MAE). Time dependence for DNA damage was modeled for two sets of process parameters: 10 kV, 4 kHz, and 2 standard liters per minute (slm) (d), and 11 kV, 3 kHz, and 2 slm (e), indicating physical violation for GBR and SVR. (f) Evaluation plot of the un-augmented test data for PGNN. Evaluation scores are R ­ 2 = 0.976, RMSE = 2.45, and MAE = 2.2. Scientific Reports | (2022) 12:18353 | https://doi.org/10.1038/s41598-022-21783-3 3 Vol.:(0123456789) www.nature.com/scientificreports/ Figure 2.  Workflow for the extraction of dose-rate values. (a) LTP-induced DNA damage versus irradiation time as modeled using PGNN for process parameters: 8 kV, 1 kHz, and 2 slm. (b) Dose-DNA damage correlations for gamma rays obtained from the literature. (c) Illustration of the ITF console used to obtain the dose-rate value for a selected data point, which is highlighted by the blue square in (b). Dose rates versus DNA damage obtained from the ITF console (d), and the transformed graph when clustering was performed (f). The clustering revealed four different clusters, represented by color: yellow, cyan, red, and purple (Table S2). Dose rate versus absorbed dose before (e) and after clustering (g). Scientific Reports | Vol:.(1234567890) (2022) 12:18353 | https://doi.org/10.1038/s41598-022-21783-3 4 www.nature.com/scientificreports/ our initial assumption of the equivalency of dose-DNA damage correlations for both types of radiation, the LTP dose rate was approximated as in Eq. (1):   dose LTP dose rate voltage, frequency, flow rate = , tirr (1) where ­tirr is the irradiation time estimated through the ITF console (Fig. 2c) for the highlighted point in the doseDNA damage plot (Fig. 2b). We repeated this procedure for each data point in the dose-DNA damage database (Fig. 2b), which resulted in generating LTP dose rates corresponding to the equivalent extent of DNA damage and the absorbed dose as seen in Fig. 2d,e. Both plots revealed that the estimated dose-rate values are spread over a wide range from 0.1 to 15 Gy/s. Therefore, we needed to cluster the dose-rate values into four distinct data groups (Fig. 2f,g). We accomplished this by incorporating a clustering console to convert the dose rates into clusters through K-means clustering of the dose-rate values followed by outlier treatment for each cluster. We then computed the centroid (i.e., the mean of each cluster) and standard deviation in dose rates for each cluster (Table S2). Similarly, we encountered spread patterns in dose-rate plots for other types of radiation (Fig. S10), and we followed the clustering procedure to obtain the values for all clusters, as summarized in Table S3. It is important to note that formation of clusters in a wide range of dose rates can be attributed to different types of DNA and buffers used, as well as other experimental factors in the data reported in the literature which were incorporated into our modeling. LTP dose‑rate dependence on plasma process parameters. Our LTP dose-rate framework evalu- ated the dose rate for LTP at a given set of process parameters; however, plasma-induced DNA damage evolves when these parameters are varied. Therefore, we investigated the evolution of dose rates for different process parameters in our experiments. For example, Fig. S11 shows the effect of voltage and frequency on the dose-rate values at a constant flow rate of 2 standard liter per minute (slm) for LTP, at which the extent of DNA damage at the specific irradiation time is equivalent to the damage by gamma radiation. With an increase in frequency, a centroid of dose-rate values increases up to as much as 20 Gy/s for this case (Fig. S11b,c, Movie S1). Although an increase in the dose-rate with voltage also occurs, the effect is less significant than the one observed with a rise in frequency (Fig. S11d,e, Movie S2). Similarly, we computed the evolution of the dose-rate dependence with voltage and frequency if the DNA damage by LTP is equivalent to the effects from other radiation types. Figure 3 and Fig. S12 represent the average dose rate estimated for clusters with the lowest dose rate for LTP compared with different radiation types. Generally, in radiation research, the dose-rate effect is associated with the yield of specific reactive species, which induce chemical alterations in the biomolecular t­ arget13. Using a traditional chemical dosimeter in our previous study, we observed an increase in the total amount of reactive species as a function of frequency and voltage for the same LTP ­source15. Thus, the increase in the estimated dose rate with a frequency and voltage in this study can be related to the increase in the number and/or type of plasma species responsible for DNA damage. However, our ML framework has not yet included calculations on any possible chemical reactions upon LTP irradiation. Nevertheless, the prospect of adjusting the dose rate of LTP by tuning the process parameters offers great potential for a wide range of applications in medical t­ reatments32,33. Comparison of modeled and measured LTP dose‑rate values. The above described LTP dose-rate extraction framework was based on the initial assumption that the effects of LTP on DNA damage would correspond with the one from the dose-DNA damage correlation by finding the irradiation time for a given radiation type. Therefore, this assumption could possibly insinuate that the estimated value of the dose rate for LTP will be the same as the measured dose rate for the type of radiation used for finding this value. However, as will be further shown, that is not the case. In addition, the LTP dose rate evolves with different process parameters (Fig. 3). Thus, to determine how the estimated dose rate for LTP relates to other radiation types, we introduced a comparative task into the ML framework. We created metrics of the estimated doses and evaluated their deviation from the dose-rate values found in the literature for a given radiation type. Heat maps in Fig. 4a–d represent the obtained relative deviation with dose-rate values reported for four types of radiation for the cluster with lowest dose-rate value. The heat maps for different process parameters show the maximum disparity at a high voltage (> 9 kV) and frequency (> 2 kHz), because these parameter combinations generated high estimated dose rates for LTP (Fig. 3). Table S4 summarizes the other metric values used for dose-rate comparison, including the ratio of the minimum estimated dose rate of LTP for the cluster with the lowest dose rate and the dose rate found in the literature for a given radiation type reported for DNA irradiation. The bar chart in Fig. 4e represents the average and minimum relative deviations of the LTP dose rate and the literature values, indicating the slightest deviation between LTP and the proton’s dose rates and the maximum disparity with X-rays. The closest match between the minimum LTP dose rate estimated through our modeling is with the dose rate for protons. This minimum dose rate for LTP has a magnitude of 0.2 Gy/s, which is remarkably high compared to other types of radiation. We measured the LTP dose rates with two dosimeters, the Fricke and alanine dosimeters (Fig. 4f). We selected these two methods because the former is used typically to estimate dose rates of liquids and yields of water products and the latter for biological efficacy; thus, they were relevant to the type and form of our target, an aqueous DNA. Both dosimeters were irradiated by LTP at the same plasma conditions, which corresponded to the process parameters for which the dose-rate values were estimated using the ML framework (Tables S2, S3). A Fricke (ferrous-ferric ion) chemical dosimeter is widely used in radiation chemistry for the overall detection of water radiolysis products such as the hydroxyl radical, hydrogen superoxide/hydrogen radical, and hydrogen ­peroxide34. In this method, during ionizing radiation, a ferrous ion ­(Fe2+) is oxidized to a ferric ion ­(Fe3+), which has optical Scientific Reports | (2022) 12:18353 | https://doi.org/10.1038/s41598-022-21783-3 5 Vol.:(0123456789) www.nature.com/scientificreports/ Figure 3.  Dose-rate dependence with frequency and voltage. The plot of average dose rate (centroid) versus frequency for the lowest dose-rate cluster as modeled using dose-DNA damage correlation for gamma rays (a), alpha particles (b), protons (c), and X-rays (d) at three different applied voltages (7 kV, 8 kV, and 9 kV). The frequency was varied from 0.5 to 4 kHz at increments of 0.25 kHz. Figure 4.  Comparison of LTP dose rates with dose rates for other types of radiation. Heat maps of the relative deviation of the estimated dose rate of LTP with the literature values for protons (a), gamma rays (b), ions (c), and X-rays (d) for the lowest dose-rate cluster. (e) Summary of the minimum relative deviation of dose rate and average relative deviation of dose rate for different radiation types. See the SI about excluding UV rays, electrons, and alpha particles in our dose-rate comparison. (f) The experimental results of LTP dose-rate measurements using the Fricke and alanine dosimetries irradiated at the following process parameters, 8 kV, 1 kHz, and 2 slm. See the “Methods” section and Figs. S13 and S14 for the detailed methodology and data analysis. Scientific Reports | Vol:.(1234567890) (2022) 12:18353 | https://doi.org/10.1038/s41598-022-21783-3 6 www.nature.com/scientificreports/ absorption at ~ 304 nm; therefore, the absorbed dose can be determined based on the concentration of ­Fe3+35,36. This method indicated a substantially high dose rate of approximately 0.76 Gy/s, four times higher than the minimum dose rate for LTP of 0.2 Gy/s as stated above, obtained from the modeling for the same plasma process parameters. Alanine dosimetry is based on radical detection using an electron paramagnetic resonance (EPR) ­spectroscopy37 that can be used over a wide dose range of 1 Gy to 150 kGy for all radiation ­types38. The dose rate obtained using alanine was 0.01 Gy/s, nearly two orders of magnitude lower than the dose rate obtained by Fricke dosimetry. The difference indicated that the two traditional dosimetry methods for assessing LTP dose rates gave inconsistent results and that alternative methods were therefore needed. Discussion LTP is an emerging type of radiation that has shown already significant potential in various therapeutic applications. It could soon be used in clinical practice if the plasma radiation dose could be established. The commonly used dosimetric procedures in radiation research, which have been utilized for decades for high-energy ionizing radiation, have proven to be insufficient for providing accurate measurements of the LTP dose rate, which is a key quantity of any radiation source in clinical usage. Strategies have been proposed to overcome this challenge by defining the plasma dose in new ­ways3. We showed that using two different dosimetric methodologies resulted in two distinctive dose-rate values and this was caused by several factors. The primary factors were different mechanisms of radiation responses due to plasma irradiation and the fact that the plasma species’ penetration and diffusivity depend on the physical form of dosimeters. For example, we measured a lower absorbed dose rate for the alanine dosimeter, which is a solid target, compared to the Fricke dosimeter, which is a liquid target, that was most likely attributed to lower penetration depths in solids compared to liquids. In addition, the dose rates were slightly, but noticeably, different when the Fricke solution was stirred or unstirred during irradiation. Also, the ionic strength of the Fricke solution and the aeration ­conditions39 could affect the reaction rates for the formation of water radiolytic products. With alanine dosimetry, we observed better reproducibility of the results; however, the solid form of this dosimeter limited the diffusion and penetration of plasma species, causing EPR signal saturation relatively quickly. Therefore, in this work, we proposed an alternative method that could improve our determination of the LTP dose rates by using aqueous DNA and the damage to it; this would be an indicator of radiobiological efficacy for a dosimeter that combines the characteristics of water- and tissue-dose equivalency. To elucidate this, we generated a dose-rate assessment ML framework that incorporated a predictive model of plasma-induced DNA damage based on our experimental data with the correlations of dose-DNA damage identified in the existing literature. In this framework, we implied the equivalency of the extent of DNA damage induced by LTP with other types of radiation having a known absorbed dose. Then we obtained the LTP dose rates by finding the irradiation times that corresponded to this equivalency. The predictive model, which obeyed physical consistency, unraveled the dose-rate evolution of LTP over a wide range of two process parameters, applied voltage and frequency. Varying dose rates of plasma are of potential interest in therapeutic applications in which specific biological effects can be targeted. The strategy in which deep learning algorithms were incorporated for generating predictive control models was recently utilized in a prototypical setup for the delivery of a safe dose of p ­ lasma40. Furthermore, we extended our methodology to show the effectiveness of LTP for DNA damage in relation to that of different radiation types by comparing the estimated plasma dose rate with the rates reported in the literature. We also compared the modeled values with those measured by two common dosimetric techniques. Our experimental studies and ML framework did not include the effects of other factors (e.g., the type of DNA and buffer used) or other plasma process parameters (e.g., the duty cycle of the plasma pulse) on DNA damage. Thus, our framework excluded any deviations that could arise because of a change in these parameters. More investigations should be performed in future to assess these parameters’ effect on the dose-rate estimation. Nevertheless, our conclusion that LTP can provide high dose rates (0.2 Gy/s), even higher than those of protons, is a promising and striking outcome. It revealed a value between those obtained from two dosimetric methods. Despite the high dose-rate effect of LTP, it is considered a safe radiation source for ­treatment14,26–29. Therefore, LTP is a beneficial therapeutic tool for diverse clinical applications, particularly for situations in which high dose-rate radiation is required to induce specific biological outcomes. Methods Plasma‑induced DNA damage and dosimetry: experiment. The helium-fed, LTP source used for our experiments was operated based on a dielectric barrier discharge, and it had the same design (Fig. S1) as the one implemented in our previous ­studies41. We used pUC18 plasmid DNA (Thermo Fisher Scientific, Waltham, MA) as a target for LTP irradiation. Plasmid DNA was placed under the tube orifice for LTP irradiation at several different sets of process parameters. After irradiation, we collected DNA and loaded it to the agarose gel for further processing electrophoresis technique (Biorad Inc, Hercules, CA) and imaging methods to quantify the extent of plasma-induced DNA damage, that is the percentage of strand breaks in the DNA and its denaturation. We followed the methodology described in the SI. Finally, we incorporated the data into the design of the experiments matrix for the generation of the dataset, which we used for predictive modeling. We used a Fricke dosimeter that contains 1.4 mM F ­ e2+ (iron (II) sulfate heptahydrate from Sigma Aldrich Inc, St. Louis, MO) in 0.4 M H ­ 2SO4 saturated with O ­ 2. We used alanine pellets (GEX corporation, Centennial, CO) having a 4 mm diameter and 2.35 mm thickness, and a composition of 93% of pure l-ɑ-alanine. Scientific Reports | (2022) 12:18353 | https://doi.org/10.1038/s41598-022-21783-3 7 Vol.:(0123456789) www.nature.com/scientificreports/ We carried out EPR measurements using Bruker EMXplus spectrometer (Bruker Corporation, Billerica, MA) with ER4119HS standard resonator in X-band (9.77 GHz). Next, we determined the response of alanine dosimeters to plasma irradiation by comparing them to those after 60Co gamma-ray irradiation. Generation of dose‑DNA damage database. Our proposed dose-rate assessment framework for extracting dose rates for LTP radiation at various combinations of process parameters used the correlations from the literature reported between the absorbed dose and radiation-induced DNA damage (denoted as doseDNA damage) for different types of radiation (Fig. S9). The first step for executing the proposed strategy was to create the database of dose-DNA damage correlation by performing a literature survey. The extensive literature survey consisted of dose-DNA damage correlations for the following types of radiation: alpha particles, gamma rays, X-rays, ions such as carbon, iron, and helium, protons, electrons, and UV rays. Based on the literature data, we generated the dose-DNA damage correlations for all types of radiation (alpha particles, gamma rays, ions, protons, UV rays, electrons and X-rays) that were implemented into the workflow of LTP dose-rate extraction. Supervised machine learning (ML) models. We used the standard supervised ML workflow to perform predictive modeling of the total plasma-induced damage to DNA damage (Fig. S3). Initially, the overall data acquired from DoE were split into training and test data folds (75:25 ratio). Then, the training data were entered into an ML algorithm, and the refinement/learning using cross-validation was performed on the training data. The ML algorithms chosen for modeling included linear regression, decision tree regression, ensemblebased algorithms (random forest regression, gradient boosting regression, AdaBoost regression), support vector regression, etc. The oversampling of the data was done during the model refinement stage, in which the minority data region (Fig. S4) in each training fold was augmented by the synthetic minority oversampling technique (SMOTE). The potential class imbalances that could occur during the augmentation of the minority regions were counterbalanced by sufficiently oversampling the majority region of the data. Model refining using hyperparameter tuning of the ML algorithm was performed in the learning phase and was implemented via grid-search cross-validation (CV). A fivefold grid-search CV was performed on the training data with SMOTE applied individually after the training and validation fold split (Fig. S5). We recorded the best CV scores for different ML algorithms and conducted the final assessment of the model by evaluating the refined cross-validated model on the unaugmented test data (Fig. S3). One of the ML algorithms that we used to model plasma-induced DNA damage was a P ­ GNN31. The extent of DNA damage increased as the irradiation time was extended (Fig. S7), causing a larger number of plasma interactions with DNA that provides one of the physical effects observed in our experiments. Therefore, we included the time dependence of DNA damage in our predictive modeling using PGNN. Any physical inconsistency could be captured because PGNN functions incorporated an extra loss term, namely the physical loss function (PHYLOSS), into the pure ANN loss function. In other words, any violation to the time dependence of total plasma-induced DNA damage can be eliminated in the modeling. Next, we used similar procedures to refine the model and for grid-search cross-validation, as we did for other ML algorithms; the only difference was that the extra physical loss function was incorporated to produce physically consistent predictions. We found that a three hidden-layer model architecture with 50 neurons provided supreme prediction performance and physical consistency from the hyperparameter tuning process using grid-search CV. More details on modeling are presented in the SI. Data availability The datasets used and/or analyzed during the current study are available from the corresponding author on reasonable request. Code availability Python codes that were used in the analysis are available on request from the authors (S. Ptasinska and A. Sebastian). Received: 8 July 2022; Accepted: 4 October 2022 References 1. von Woedtke, T., Laroussi, M. & Gherardi, M. Foundations of plasmas for medical applications. Plasma Sources Sci. Technol. 31, 054002. https://​doi.​org/​10.​1088/​1361-​6595/​ac604f (2022). 2. Adamovich, I. et al. The 2022 plasma roadmap: Low temperature plasma science and technology. J. Phys. D 55, 373001. https://​ doi.​org/​10.​1088/​1361-​6463/​ac5e1c (2022). 3. Laroussi, M. et al. Low-temperature plasma for biology, hygiene, and medicine: Perspective and roadmap. IEEE Trans. Radiat. Plasma Med. Sci. 6, 127. https://​doi.​org/​10.​1109/​TRPMS.​2021.​31351​18 (2022). 4. Bisag, A. et al. Cold atmospheric plasma inactivation of aerosolized microdroplets containing bacteria and purified SARS-CoV-2 RNA to contrast airborne indoor transmission. Plasma Process. Polym. 17, 1–8. https://​doi.​org/​10.​1002/​ppap.​20200​0154 (2020). 5. Guo, L. et al. Plasma-activated water: An alternative disinfectant for S protein inactivation to prevent SARS-CoV-2 infection. Chem. Eng. J. https://​doi.​org/​10.​1016/j.​cej.​2020.​127742 (2021). 6. Mohamed, H. et al. Non-thermal plasma as a novel strategy for treating or preventing viral infection and associated disease. Front. Phys. 9, 1–25. https://​doi.​org/​10.​3389/​fphy.​2021.​683118 (2021). 7. Weltmann, K. D. & von Woedtke, T. Plasma medicine—Current state of research and medical application. Plasma Phys. Control. Fus. https://​doi.​org/​10.​1088/​0741-​3335/​59/1/​014031 (2017). Scientific Reports | Vol:.(1234567890) (2022) 12:18353 | https://doi.org/10.1038/s41598-022-21783-3 8 www.nature.com/scientificreports/ 8. Guo, B. et al. Trident cold atmospheric plasma blocks three cancer survival path ways to overcome therapy resistance. Proc. Natl. Acad. Sci. U.S.A. 118, e2107220118. https://​doi.​org/​10.​1073/​pnas.​21072​20118 (2021). 9. Alizadeh, E. & Ptasińska, S. Recent advances in plasma-based cancer treatments: Approaching clinical translation through an intracellular view. Biophysica 1, 48–72. https://​doi.​org/​10.​3390/​bioph​ysica​10100​05 (2021). 10. Bekeschus, S., Schmidt, A., Weltmann, K. D. & von Woedtke, T. The plasma jet kINPen—A powerful tool for wound healing. Clin. Plasma Med. 4, 19–28. https://​doi.​org/​10.​1016/j.​cpme.​2016.​01.​001 (2016). 11. Boeckmann, L. et al. Cold atmospheric pressure plasma in wound healing and cancer treatment. Appl. Sci. 10, 1–16. https://​doi.​ org/​10.​3390/​app10​196898 (2020). 12. Hall, E. J. & Brenner, D. J. The dose-rate effect revisited: Radiobiological considerations of importance in radiotherapy. Int. J. Radiat. Oncol. Biol. Phys. 21, 1403–1414. https://​doi.​org/​10.​1016/​0360-​3016(91)​90314-t (1991). 13. Konopacka, M., Rogolíski, J., Sochanik, A. & Ślosarek, K. Can high dose rates used in cancer radiotherapy change therapeutic effectiveness? Contemp. Onkol. 20, 449–452. https://​doi.​org/​10.​5114/​wo.​2016.​65603 (2016). 14. Moniruzzaman, R. et al. Cold atmospheric helium plasma causes synergistic enhancement in cell death with hyperthermia and an additive enhancement with radiation. Sci. Rep. 7, 1–12. https://​doi.​org/​10.​1038/​s41598-​017-​11877-8 (2017). 15. Adhikari, E. R., Samara, V. & Ptasinska, S. Total yield of reactive species originating from an atmospheric pressure plasma jet in real time. Biol. Chem. 400, 63–100. https://​doi.​org/​10.​1515/​hsz-​2018-​0203 (2018). 16. Anzai, K. et al. Formation of reactive oxygen species by irradiation of cold atmospheric pressure plasma jet to water depends on the irradiation distance. J. Clin. Biochem. Nutr. 64, 187–193. https://​doi.​org/​10.​3164/​jcbn.​18-​102 (2019). 17. Ji, W. O., Lee, M. H., Kim, G. H. & Kim, E. H. Quantitation of the ROS production in plasma and radiation treatments of biotargets. Sci. Rep. 9, 1–11. https://​doi.​org/​10.​1038/​s41598-​019-​56160-0 (2019). 18. Kusano, Y., Bardenshtein, A. & Morgen, P. Fluoropolymer coated alanine films treated by atmospheric pressure plasmas—In comparison with gamma irradiation. Plasma Process. Polym. https://​doi.​org/​10.​1002/​ppap.​20170​0131 (2017). 19. Li, G. et al. Genetic effects of radio-frequency, atmospheric-pressure glow discharges with helium. Appl. Phys. Lett. 92, 98–101. https://​doi.​org/​10.​1063/1.​29386​92 (2008). 20. Han, X., Cantrell, W. A. & Escobar, E. E. Plasmid DNA damage induced by helium atmospheric pressure plasma jet. Eur. Phys. J. D. https://​doi.​org/​10.​1140/​epjd/​e2014-​40753-y (2014). 21. Arjunan, K. P., Sharma, V. K. & Ptasinska, S. Effects of atmospheric pressure plasmas on isolated and cellular DNA—A review. Int. J. Mol. Sci. 16, 2971–3016. https://​doi.​org/​10.​3390/​ijms1​60229​71 (2015). 22. Adhikari, E. R. & Ptasinska, S. Correlation between helium atmospheric pressure plasma jet (APPJ) variables and plasma induced DNA damage. Eur. Phys. J. D 70, 6. https://​doi.​org/​10.​1140/​epjd/​e2016-​70274-6 (2016). 23. Khlyustova, A., Labay, C., Machala, Z., Ginebra, M. P. & Canal, C. Important parameters in plasma jets for the production of RONS in liquids for plasma medicine: A brief review. Front. Chem. Sci. Eng. 13, 238–252. https://​doi.​org/​10.​1007/​s11705-​019-​1801-​8ƒ (2019). 24. Cheng, H., Xu, J., Li, X., Liu, D. & Lu, X. On the dose of plasma medicine: Equivalent total oxidation potential (ETOP). Phys. Plasmas. 27, 063514. https://​doi.​org/​10.​1063/5.​00088​81 (2020). 25. Harley, J. C., Suchowerska, N. & McKenzie, D. R. Cancer treatment with gas plasma and with gas plasma–activated liquid: Positives, potentials and problems of clinical translation. Biophys. Rev. 12, 989–1006. https://​doi.​org/​10.​1007/​s12551-​020-​00743-z (2020). 26. Isbary, G. et al. Ex vivo human skin experiments for the evaluation of safety of new cold atmospheric plasma devices. Clin. Plasma Med. 1, 36–44. https://​doi.​org/​10.​1016/j.​cpme.​2012.​10.​001 (2013). 27. Kos, S. et al. Safety aspects of atmospheric pressure helium plasma jet operation on skin: In vivo study on mouse skin. PLoS ONE 12, 1–15. https://​doi.​org/​10.​1371/​journ​al.​pone.​01749​66 (2017). 28. Boehm, D. & Bourke, P. Safety implications of plasma-induced effects in living cells—A review of in vitro and in vivo findings. Biol. Chem. 400, 3–17. https://​doi.​org/​10.​1515/​hsz-​2018-​0222 (2018). 29. Boekema, B. et al. Antibacterial and safety tests of a flexible cold atmospheric plasma device for the stimulation of wound healing. Appl. Microbiol. Biotechnol. 105, 2057–2070. https://​doi.​org/​10.​1007/​s00253-​021-​11166-5 (2021). 30. Torgo, L., Ribeiro, R. P., Pfahringer, B. & Branco, P. SMOTE for regression. In Lect. Notes Comput. Sci. (including Subser. Lect. Notes Artif. Intell. Lect. Notes Bioinformatics). 8154 LNCS, 378–389. https://​doi.​org/​10.​1007/​978-3-​642-​40669-0_​33 (2013). 31. Daw, A., Karpatne, A., Watkins, W., Read, J. & Kumar, V. Physics-guided neural networks (PGNN): An application in lake temperature modeling. Preprint at http://​arXiv.​org/​1710.​11431​v3 (2021). 32. Lazović, S. et al. Plasma induced DNA damage: Comparison with the effects of ionizing radiation. Appl. Phys. Lett. 105, 124101. https://​doi.​org/​10.​1063/1.​48966​26 (2014). 33. Pansare, K. et al. Effect of cold atmospheric plasma jet and gamma radiation treatments on gingivobuccal squamous cell carcinoma and breast adenocarcinoma cells. Plasma Chem. Plasma Process. https://​doi.​org/​10.​1007/​s11090-​021-​10212-4 (2021). 34. Attix, F. H. & Roesch, W. C. (eds) Chemical Dosimetry, Radiation Dosimetry (Academic Press, 1966). 35. Spinks, J. W. T. & Woods, R. J. An Introduction to Radiation Chemistry 2nd edn, 95 (Wiley, 1976). 36. Klassen, N. V., Shortt, K. R., Seuntjens, J. & Ross, C. K. Fricke dosimetry: The difference between G(Fe3+) for 60Co-rays and highenergy X-rays. Phys. Med. Biol. 44, 1609. https://​doi.​org/​10.​1088/​0031-​9155/​44/7/​303 (1999). 37. Regulla, D. F. & Deffner, U. Dosimetry by ESR spectroscopy of alanine. Int. J. Appl. Radiat. Isot. 33, 01–114. https://​doi.​org/​10.​ 1016/​0020-​708X(82)​90238-1 (1982). 38. Smith, C. L. et al. Determination of dose enhancement caused by gold-nanoparticles irradiated with proton, X-rays (kV and MV) and electron beams, using alanine/EPR dosimeters. Radiat. Meas. 82, 122–128. https://​doi.​org/​10.​1016/j.​radme​as.​2015.​09.​008 (2015). 39. Busco, G. et al. Changes in oxygen level upon cold plasma treatments: Consequences for RONS production. IEEE Trans. Rad. Plasma Med. Sci. 2, 147–152. https://​doi.​org/​10.​1109/​TRPMS.​2017.​27757​05 (2018). 40. Bonzanini, A. D., Paulson, J. A., Graves, D. B. & Mesbah, A. Toward safe dose delivery in plasma medicine using projected neural network-based fast AC approximate NMPC. IFAC-Pap. Online 53, 5279–5285. https://d ​ oi.o ​ rg/1​ 0.1​ 016/j.i​ facol.2​ 020.1​ 2.1​ 208 (2020). 41. Adhikari, E. R., Samara, V. & Ptasinska, S. Influence of O ­ 2 or H ­ 2O in a plasma jet and its environment on plasma electrical and biochemical performances. J. Phys. D 51, 1. https://​doi.​org/​10.​1088/​1361-​6463/​aab8f (2018). Acknowledgements This work was supported by the U.S. Department of Energy Office of Science, Office of Basic Energy Sciences under Award Number DE-FC02-04ER15533. This is contribution number NDRL 5347 from the Notre Dame Radiation Laboratory. Author contributions A.S. and S.P. proposed and devised the idea; D.S. did the literature survey for the dose data; A.S. did the experiments and designed the machine learning models, including physics guided neural networks; A.S. and D.S. did the dose rate deviation calculations, and visualization; A.L. conducted the Fricke and alanine dosimetries; all authors discussed the results and wrote the manuscript. Scientific Reports | (2022) 12:18353 | https://doi.org/10.1038/s41598-022-21783-3 9 Vol.:(0123456789) www.nature.com/scientificreports/ Competing interests The authors declare no competing interests. Additional information Supplementary Information The online version contains supplementary material available at https://​doi.​org/​ 10.​1038/​s41598-​022-​21783-3. Correspondence and requests for materials should be addressed to S.P. Reprints and permissions information is available at www.nature.com/reprints. 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Fear Generalization and Mnemonic Injustice
Episteme
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Abstract This paper focuses on how experiences of trauma can lead to generalized fear of people, objects and places that are similar or contextually or conceptually related to those that produced the initial fear, causing epistemic, affective and practical harms to those who are unduly feared and those who are intimates of the victim of trauma. We argue that cases of fear generalization that bring harm to other people constitute examples of injust- ice closely akin to testimonial injustice, specifically, mnemonic injustice. Mnemonic injust- ice is a label that has been introduced to capture how injustice can occur via the operation of human memory systems when stereotypes shape what is remembered. Here we argue that injustices can also occur via memory systems when trauma leads to a generalized fear. We also argue that this calls for a reformulation of the notion of mnemonic injustice. Keywords: Memory; injustice; mnemonic injustice; epistemic injustice; fear; fear generalization; marginalization; vulnerability Episteme (2024), 1–27 doi:10.1017/epi.2023.60 Marina Trakas1† and Katherine Puddifoot2*† Marina Trakas1† and Katherine Puddifoot2*† 1Instituto de Investigaciones Filosóficas (IIF), Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET) / Sociedad Argentina de Análisis Filosófico (SADAF), Bulnes 642, CP: 1176, CABA, Argentina and 2Durham University, Durham DH1 3HN, UK *Corresponding author: Katherine Puddifoot; Email: katherine.h.puddifoot@durham.ac.uk (Received 25 May 2023; revised 26 September 2023; accepted 18 November 2023) © The Author(s), 2024. Published by Cambridge University Press. This is an Open Access article, distributed under the terms of the Creative Commons Attribution licence (http://creativecommons.org/licenses/by/4.0/), which permits unre- stricted re-use, distribution and reproduction, provided the original article is properly cited. †These authors contributed equally to this work. †These authors contributed equally to this work. 1These quotes are from a qualitative study of experiences of parenting in people with PTSD (Christie et al. 2023). © The Author(s), 2024. Published by Cambridge University Press. This is an Open Access article, distributed under the terms of the Creative Commons Attribution licence (http://creativecommons.org/licenses/by/4.0/), which permits unre- stricted re-use, distribution and reproduction, provided the original article is properly cited. 1. Introduction It was really difficult, I think because she wasn’t going to be with me. And I was going to have to entrust her to another human being, and I didn’t want to. She would have to be on her own with a person that I didn’t know for hours, and she was toilet training. I was so worried something was going to happen…. (PID 020, mother) (Christie et al. 2023). Oh no, no. I didn’t want him to become harmed in any way, so I wouldn’t take him to ice hockey or things. I just wouldn’t go. It was just sheer anxiety. I was so concerned for his [child] safety…I’d already had one accident and that was the only time I’d had an accident and I certainly didn’t want to have another one. (PID 007, father) (Christie et al. 2023).1 †These authors contributed equally to this work. 1 1These quotes are from a qualitative study of experiences of parenting in people with PTSD (Chri al. 2023). https://doi.org/10.1017/epi.2023.60 Published online by Cambridge University Press Marina Trakas and Katherine Puddifoot 2 Fear generalization occurs when a person experiences a fear response that spreads, and fear is triggered by items that differ, sometimes significantly, from the original object that caused the fear. This paper explores the impact of the pathological spread of fear on those who interact or live with people experiencing this pathology, such as children of parents who are overprotective because of their past traumatic and fear-inducing experiences. We argue that the effect on other people of overgeneralized fear can be an injustice, specifically, a mnemonic injustice. Fear overgeneralization brings significant costs to the person who directly experi- ences the fear. The costs can be affective because of the fear that is experienced but also because people experiencing generalized fear can suffer from stress and anxiety. They can be practical, as people experiencing fear that generalizes can fail to gain social and economic benefits, for example, due to withdrawing from situations in which their fear may be elicited. There can also be epistemic costs associated with experiencing fear that generalizes, as we shall see in more detail below (section 4 and see also Puddifoot and Trakas 2023). However, our primary focus in this paper is specifically on the harms inflicted on other people as a result of a person’s overgeneralized fear that occurs due to trauma. 2We leave open the question whether there can be mnemonic injustice in the absence of independently wrongful acts. We will have achieved our aim of showing that there can be mnemonic injustice via fear generalization if in this paper we show that where there is wrongdoing there is injustice. https://doi.org/10.1017/epi.2023.60 Published online by Cambridge University Press 1. Introduction We argue that these indirect harms of fear overgeneralization can be injustices. More specifically, when one person’s fear generalizes, the spreading of the fear can be impli- cated in injustice towards others. To clarify, we do not take the person who experiences the fear, or their cognitive mechanisms, to be responsible for the injustice. Instead, we view their memory systems to be a vehicle through which injustice occurs. We also do not mean to say that on any occasion where a person is harmed by another person’s overgeneralized fear there is an injustice. Instead, we make space for the idea that there can be mnemonic injustices via fear overgeneralization by arguing that generalized fear can be implicated in injustice when the initial fear is due to wrongdoing and those affected by the overgeneralized fear are in a situation of vulnerability.2 Children of over- protective parents can be vulnerable, for example, as can otherwise marginalized indi- viduals. We will provide details of this vulnerability and how it can be a source of injustice below. Because fear generalization is an extension of a conditioned fear response that spreads, it is an effect of non-declarative memory. The injustice that we identify is there- fore a mnemonic injustice where this is broadly conceived as an injustice that occurs where the operation of one person’s memory mechanisms both prevents that person from gaining knowledge and brings epistemic and/or practical harms, and wrongs, to other people. The label mnemonic injustice has been introduced to capture how stereo- types shape what people remember about their personal pasts (Puddifoot forthcoming). In this paper, we will argue that there are sufficient similarities between stereotype- driven cases of mnemonic injustice and some examples of pathological fear generaliza- tion that the latter should be classified as mnemonic injustices. Accepting that there can be mnemonic injustice in these types of cases involves accepting some modifications to how mnemonic injustice has previously been conceived, not least accepting that it can happen via non-declarative memory in addition to declarative episodic or semantic memory. 2We leave open the question whether there can be mnemonic injustice in the absence of independently wrongful acts. We will have achieved our aim of showing that there can be mnemonic injustice via fear generalization if in this paper we show that where there is wrongdoing there is injustice. 2. The original notion of mnemonic injustice and the parity claim There has been extensive work outlining how societies can cultivate collective amnesia or ignorance and thus bring injustice to (some of) their members (e.g. Beiner 2018; Blustein 2008; Connerton 2009; Jacoby 1975; Mills 2007; Stone and Hirst 2014). In recent work exemplifying this approach, for example, Tanesini (2018) argues that there are injustices that occur when, in response to trauma, societies engage in a process of destroying objects that may be reminders of the trauma, cultivating a form of collect- ive amnesia or ignorance. However, there has been a relative paucity of discussion of how individuals’ memory systems can be implicated in injustices towards others with- out the injustice involving collective remembering or amnesia. Only recently has Puddifoot (forthcoming) analysed one specific way in which an individual’s personal memories can be implicated in injustices towards other people. Puddifoot has surveyed psychological research suggesting that stereotypes can shape how events in one’s per- sonal past are remembered and argued that memories of this kind can be implicated in injustices. She has labelled injustices of this type, occurring due to personal memory mechanisms, mnemonic injustices. One main goal of this paper, then, is to show that cases of fear generalization can also be cases of mnemonic injustice. To understand the value of this claim, it is important to first see how the notion of mnemonic injustice has previously been used (Puddifoot forthcoming). Central to the case for taking mnemonic injustice seriously is a parity claim: cases where memories are implicated in injustice are often similar in both kind and severity to cases of testimonial injustice. Testimonial injustice has been studied extensively and taken extremely ser- iously as a source of injustice (see, e.g. Fricker 2007; Kidd et al. 2017), so mnemonic injustice should also be. This section outlines the basis of this parity claim, and in the process defines the contours of mnemonic injustice as described in previous work. The parity claim was formulated in response to psychological findings demonstrat- ing how stereotypes shape what is remembered about social actors and events (Puddifoot forthcoming). 1. Introduction https://doi.org/10.1017/epi.2023.60 Published online by Cambridge University Press Episteme 3 The structure of the paper is as follows. In section 2 we introduce the notion of mne- monic injustice, and highlight its usefulness. In section 3 we provide more detail about fear generalization and lay out the basic structure of the argument in support of there being mnemonic injustice that occurs via pathological fear generalization. Section 4 outlines epistemic costs from fear generalization for the person whose memory systems are directly impacted by the fear. Section 5 outlines how other people who are unduly feared can undergo epistemic, affective and practical costs. Section 6 describes how inti- mates of people who experience generalized fear can also experience each of these types of cost. Section 7 makes the case that the costs outlined in 5 and 6 are harms that con- stitute wrongs. Section 8 compares fear generalization to previously identified forms of mnemonic injustice and testimonial injustice to consolidate the claim that the phenom- enon can usefully be classified as a mnemonic injustice. Section 9 draws out the impli- cations of acknowledging the mnemonic injustice of fear generalization for the search for an understanding of the relationship between individuals’ memories and injustice. https://doi.org/10.1017/epi.2023.60 Published online by Cambridge University Press 2. The original notion of mnemonic injustice and the parity claim These findings demonstrate two relevant biases: sometimes people remember features of a person who is remembered (behaviours or personal traits) that are consistent with a stereotype of their social identity better than features that are inconsistent with a stereotype, and sometimes the reverse effect is found (Djiksterhuis and Van Knippenberg 1995; Fyock and Stangor 1994; Hastie 1981; Hastie and Kumar 1979; Rojahn and Pettigrew 1992; Srull 1981; Stangor and Marina Trakas and Katherine Puddifoot 4 McMillan 1992). Under conditions where a stereotype influences what is remembered in either of these ways, a false impression can be formed about an individual social actor or event that reflects either the stereotypical or non-stereotypical information better than other information about the particular social actor or event. The person remem- bering can consequently form false beliefs, fail to acquire knowledge and be ignorant about what really happened in the past. They can suffer epistemic costs because of the way that stereotypes shape their memory. Puddifooot (forthcoming) has argued that the epistemic costs suffered by the person whose memories are shaped by stereotypes can be accompanied by epistemic and/or practical costs for those who are misremembered. It is also likely to often bring affective costs such as stress, anxiety and depression. Having one’s behaviours, attributes or per- sonal contributions misremembered can bring substantial harms. Take for example, a case where a manager misremembers who contributed most to a project, falsely recal- ling, due to the influence of a stereotype, that a white male employee was a driving force behind a project led by a black female employee. If the manager’s subsequent judge- ments about who to promote are shaped by the stereotype-driven memory, this is an injustice. The injustice is both epistemic, because the person who made the contribution is misremembered to their disadvantage, and not given credit for their cognitive labour and any knowledge and expertise that they provide; and practical, because she does not get rewarded when promotion decisions are made. There may be an additional epi- stemic cost to the person who is not promoted: a lack of understanding of why their work has not been rewarded. In addition to this, there is likely to be an affective harm: for example, a sense of being disheartened, disappointed, stressed or anxious. Each of these harms occurs because of the ignorance displayed by the manager due to their memory biases. https://doi.org/10.1017/epi.2023.60 Published online by Cambridge University Press 2. The original notion of mnemonic injustice and the parity claim We are now in a position to see why cases where memories are shaped by stereotypes should be treated on a par with cases of testimonial injustice, as injustices, but of a mne- monic type. In cases of testimonial injustice, a hearer fails to get knowledge via testi- mony because of the influence of a stereotype on their receipt of the testimony. They give testimony less credibility than it is due, failing to give uptake to credible testimony that could have provided them with knowledge (Fricker 2007). In cases of stereotype- driven mnemonic injustice, people fail to get knowledge via memory because of the influence of a stereotype. The epistemic and practical harms that follow for those who are the target of the stereotype are extremely similar. Both involve people receiving a lack of recognition, either for the quality of their testimony, or the quality of their attributes and behaviours. Testimonial injustice has been argued to have substantial practical costs, and mnemonic injustice can too. Therefore, there is reason to think that mnemonic injustice, like testimonial injustice, should be viewed as a serious injust- ice, worthy of tackling. As in testimonial injustice (Anderson 2012; Fricker 2017), mnemonic injustice can be tackled through changes to human psychology, social or institutional structures (Puddifoot forthcoming). Where stereotypes influence what is remembered, it is pos- sible to reduce the negative impact of the stereotypes on memory by changing people’s psychologies in ways that reduce the extent to which they harbour stereotypes and apply those in a specific context. People may also learn to critically reflect upon their memory and consequently adjust the credence given to the memory to reflect the possibility that it has been influenced by stereotypes. These psychological strategies can be complemen- ted with structural and institutional measures that aim to reduce the presence and prevalence of stereotypes, and their influence on people’s thoughts and memories. Episteme Episteme 5 For example, social and political measures to challenge the stereotype associating scien- tific expertise with males and not females can reduce the distorting effect of this com- mon stereotype on memory. It is also possible to reduce mnemonic injustice by modifying how social institutions work so that decision-making, for example about hir- ing and promotions, is less driven by personal memory and therefore less susceptible to the influence of memory bias. 2. The original notion of mnemonic injustice and the parity claim For example, social and political measures to challenge the stereotype associating scien- tific expertise with males and not females can reduce the distorting effect of this com- mon stereotype on memory. It is also possible to reduce mnemonic injustice by modifying how social institutions work so that decision-making, for example about hir- ing and promotions, is less driven by personal memory and therefore less susceptible to the influence of memory bias. At this point, it is worthwhile briefly clarifying further the relationship between mnemonic injustice and epistemic injustice. Cases where stereotypes shape what is remembered have been argued to be mnemonic injustices because of their similarities to a specific type of epistemic injustice, i.e. testimonial injustice. The notion of epistemic injustice has gained a great deal of traction since Miranda Fricker’s seminal 2007 work Epistemic Injustice: Power and the Ethics of Knowing. It would therefore be easy to take this paper as providing a description of a variety of epistemic injustice. However, mne- monic injustice is not to be interpreted as a variety of epistemic injustice, although it will sometimes involve people experiencing epistemic injustice as a part of the injustice. Instead, mnemonic injustice is an injustice that occurs due to the way that one person’s memory systems can place a barrier to them gaining knowledge, and by the same mech- anism bring epistemic, but also affective and practical harms, and wrongs, to other peo- ple. Even where the harms to others from fear generalization are not primarily epistemic harms, there can still be mnemonic injustice. In the rest of this paper, we aim to show that the concept of mnemonic injustice ought to be applied more broadly than it has been previously, and a larger number of cases where memory systems lead to injustice should be recognized, taken seriously and addressed by both psychological and social interventions. We focus here on cases of pathological fear generalization, where people’s non-declarative memory mechanisms operate in such a way that those people experience fear in response to non-threatening people, places and things. We show how in these cases many of the features of stereotyping-based mnemonic injustice are present – enough to merit treating cases of fear generalization as cases of mnemonic injustice. https://doi.org/10.1017/epi.2023.60 Published online by Cambridge University Press https://doi.org/10.1017/epi.2023.60 Published online by Cambridge University Press 3. Fear generalization and mnemonic injustice: the basics Let us now consider in some more detail the nature of fear generalization and why it should be taken seriously as a site for mnemonic injustice. Fear generalization is an extension of a conditioned fear response. Under one lens, this phenomenon is highly adaptive for survival, as it enables learned aversive responses to threats to transfer to items more or less similar to those previously experienced as threatening (Dunsmoor et al. 2009; Shepard 1987). However, it can become maladaptive. Although it may not be possible to establish a clear boundary between adaptive and maladaptive fear generalization, it can be categorized as maladaptive when fear overgeneralizes to a wide range of objects and situations that pose no genuine threat or danger (Asok et al. 2019). In such cases, this extended fear response tends to incur more costs than benefits for the organism’s self-preservation. Pathological fear overgeneralization is exemplified by the case of Little Albert, who, as an 11-month-old, was exposed to the pairing of the stimulus of a white rat and a jarring sound (Watson and Rayner 1920). Albert developed a fearful reaction to the white rat, which could be seen as adap- tive within the laboratory setting. However, he also exhibited this fear response to other items that shared perceptual similarities with the rat, such as a dog, a rabbit, a fur coat, cotton wool and even a Santa Claus hat, despite these items not posing any actual threat Marina Trakas and Katherine Puddifoot 6 to him. In this case, the child displayed a conditioned fear response that extended to a wide range of objects beyond the initial trigger of his fear, leading to what can be described as maladaptive fear generalization. Although in Little Albert’s case the fear spread to items that are perceptually similar to the original elicitor of the fear, at other times fear spreads to items that are conceptually linked to the initial experience of fear, or to similar contexts (Bennett et al. 2015; Dunsmoor and Murphy 2015; Dunsmoor et al. 2009; Dymond et al. 2015, 2018). Our focus here is then on cases where the fear that overgeneralizes is pathological and is derived from an experience, or experiences, of trauma imposed by other individuals or institutions (see also Puddifoot and Trakas 2023).3 Fear conditioning and fear generalization are considered to be a kind of non- declarative memory, more specifically, associative learning. 3. Fear generalization and mnemonic injustice: the basics In the standard model of memory, long-term memory systems are often distinguished into declarative and non- declarative (Squire 1992; Squire and Zola-Morgan 1988). Declarative memory systems include episodic memory and semantic memory. There is much debate about how to define episodic and semantic memory, but in general terms, episodic memory refers to memory of events personally experienced and semantic memory refers to memory of facts or general knowledge (Tulving 1972, 1985). Our focus here, however, is on the category of non-declarative memory. Non-declarative memory is a broad category that includes an array of phenomena such as memory of procedural tasks, like riding a bike, classical conditioning of responses, such as fear conditioning, habituation, prim- ing and other forms of implicit memory (Roediger III et al. 2017). As Milner et al. (1998) put it, ‘non-declarative memory […] underlies changes in skilled behaviour, and the ability to respond appropriately to stimuli […] as a result of conditioning or habit learning. It also includes […] priming’ (450). Because fear generalization involves associative learning of a conditioned fear response, and is a matter of changes in behav- iour and responses to stimuli so that they are considered to be fearful, the phenomenon fits squarely into the category of non-declarative memory. In fact, several models of emotional memory assume a dissociation between the verbally accessible memory of the emotional event and the implicit and non-declarative memory of the emotional event, which encodes emotionally arousing information automatically activated through appropriate situational cues (Krikorian and Layton 1998; LeDoux 1993, 1996; Nicolas 1996; Phelps 2004; Tobias et al. 1992; for a review, see also Trakas 2021). Our focus in this paper is on fear generalization that we suggest fits into the latter category of memory effects. y Although primarily a mnemonic phenomenon, there is also, of course, an affective element to fear generalization and the harms and wrongs it produces. The person who experiences fear that generalizes – and indeed some others who are impacted by the gen- eralized fear in the ways we will outline below – could be classified as experiencing an affective injustice on a broad definition of this injustice, e.g. ‘An affective injustice, […] we can understand broadly as an injustice faced by someone specifically in their capacity as an affective being’ (Archer and Mills 2019). 3From this point forward, whenever we mention ‘fear generalization’ or ‘generalized fear’, we will spe- cifically be referring to the condition of pathological fear overgeneralization. https://doi.org/10.1017/epi.2023.60 Published online by Cambridge University Press 3. Fear generalization and mnemonic injustice: the basics However, unlike previously discussed cases of affective injustice, the injustice described at the heart of this paper is not solely or pri- marily the injustice of having an apt affective response that one cannot express without risking one’s prudential concerns (Srinivasan 2018). Nor is the injustice solely or primar- ily constituted of the harms that a person can face when there is a demand for them to https://doi.org/10.1017/epi.2023.60 Published online by Cambridge University Press Episteme Episteme 7 modulate an apt affective response (Archer and Mills 2019). Similarly, the injustice does not involve a failure to give uptake to the meaning of an affective response like anger (Whitney 2018). Instead, we are primarily concerned here with how one person’s affective response can be implicated in wrongs towards others via the process of fear conditioning and the spreading of the fear – that is, via non-declarative mnemonic effects. For this rea- son, we adopt the label mnemonic injustice rather than affective injustice although, as we shall see further below, there are aspects of the effect that we describe that will look very much like affective injustice. Why, then, should we think that this memory effect should count as an injustice, and specifically a mnemonic injustice? Here is the argument in a nutshell. In some cases of pathological fear generalization: (i) the people who directly experience the fear undergo epistemic costs because of the actions of those who inflict the fear on them – they miss out on knowledge; (ii) marginalized individuals who unduly become the objects of fear that overgeneralizes can experience significant epistemic and non-epistemic harms, including affective and practical harms; (iii) other people, who are intimates of the per- son who experiences the fear, can experience significant epistemic and non-epistemic harms, including affective and practical harms. It can be added to this picture that in our target cases, i.e. those that we argue here are mnemonic injustices, not only are people who are unduly feared or intimates of the person experiencing the generalized fear harmed, they are also wronged by those people who inflict the fear that becomes generalized. They are wronged first because they face a risk of harm due to a wrongful act, i.e. the act that imposed the original trauma on the person who experiences fear that generalizes. 3. Fear generalization and mnemonic injustice: the basics We argue that the wrongdoing of those who impose the trauma extends beyond the initial target of the traumatic experience, to others who are epistemically and non-epistemically harmed by the generalized fear. Second, they are wronged because they experience a disproportionate risk of harm due to their existing marginalization or other vulnerabilities. Where an already vulner- able individual experiences a disproportionately high risk of harm due to another’s choice to engage in wrongdoing, we would argue that this is an injustice. In the cases we describe this type of injustice occurs via the memory mechanisms of people who experience fear that generalizes due to the wrongful trauma imposed on them. It is therefore a mnemonic injustice. Sections 4–7 flesh out the details of this argument. https://doi.org/10.1017/epi.2023.60 Published online by Cambridge University Press 4. Epistemic harm to the person who experiences fear Let us begin, then, by considering how people who directly experience fear generaliza- tion can undergo epistemic harms due to the actions of others that lead them to experi- ence generalized fear (i.e. (i)) (see also Puddifoot and Trakas 2023), that is, how they can miss out on knowledge. Fear generalization can happen after a traumatic event. People who experience trauma can have an extreme fear response to events, items, peo- ple and contexts that are conceptually, perceptually or contextually related to the trauma-inducing experience(s) (Bennett et al. 2015; Dunsmoor and Paz 2015; Dymond et al. 2018). They can consequently engage in ‘situation management’ (Archer and Mills 2019), managing the situations that they find themselves in to regu- late their emotions, specifically avoidance behaviour, avoiding settings which they think are likely to trigger a fear response in them. Situation management has been described in the literature on affective injustice, where it has been argued that a demand for mar- ginalized individuals to attenuate their emotions by controlling the situations that they enter can lead to further marginalization and injustice (Archer and Mills 2019). It might Marina Trakas and Katherine Puddifoot 8 therefore be said that people experiencing fear generalization due to trauma-inducing experiences undergo an affective injustice. However, for current purposes, because we are aiming to identify the harms and injustices suffered by other people as a result of one person’s overgeneralized fear, the most important point is that this avoidance behaviour due to fear generalization brings a significant epistemic cost for the person whose memory mechanisms are implicated in injustice (for other epistemic costs see Puddifoot and Trakas 2023). People who withdraw from settings in which they believe that they might experience a fear response radically reduce their epistemic horizons. Perhaps the clearest cases where people’s epistemic horizons are limited are those where young people who experience sexual assault in educational settings consequently experience a negative impact on their educational attainment (Duffy et al. 2004; Hill and Silva 2005; Mengo and Black 2016). They may avoid particular buildings, skip classes, drop an entire course, and even leave school or college, missing out on a basic level of education that is available to most other people. This is a clear epistemic cost. 4. Epistemic harm to the person who experiences fear But other cases of fear generalization also limit people’s epistemic horizons and prevent them from gain- ing knowledge that can be considered to be necessary to support their objective needs such as health, wellbeing, financial security, and autonomy. For example, people who have experienced trauma may avoid social situations. They sometimes avoid interacting with people with certain social identities (e.g. men or people from certain ethnic groups), where those identities become associated with a fear response. They can thereby miss out on gaining information that could be acquired through entering those social settings and interacting with a wider variety of people. The information missed can be information about trivial matters, but sometimes can be more crucial, such as job-relevant knowledge. For instance, people who are in positions of authority are often men, and women who have experienced sexual assault by a man can develop problems communicating with their male bosses (Easteal 1994), losing the opportunity to gain insider knowledge. Furthermore, victims of sexual assault often avoid sexual encounters for a long period (Herman 1992; van Wijk and Harrison 2014), and this prevents them from gaining knowledge about their own sexual pleasure and sexual self, especially if they were virgin when raped. The limits placed on people’s epistemic horizons bring the additional epistemic cost that people do not receive information that can disconfirm their negative expectations and limit how far their fear generalizes. Some evidence suggests that people’s fear responses can, in certain cases, be reduced on exposure to stimuli that would tend to elicit a fear response, if they experience the stimuli as safe (Dunsmoor and Paz 2015; Ehlers et al. 2004; Foa and Kozak 1986). Going back to school and being warmly wel- comed by friends and teachers, talking and socialising with friendly and respectful men The limits placed on people’s epistemic horizons bring the additional epistemic cost that people do not receive information that can disconfirm their negative expectations and limit how far their fear generalizes. Some evidence suggests that people’s fear responses can, in certain cases, be reduced on exposure to stimuli that would tend to elicit a fear response, if they experience the stimuli as safe (Dunsmoor and Paz 2015; Ehlers et al. 2004; Foa and Kozak 1986). https://doi.org/10.1017/epi.2023.60 Published online by Cambridge University Press 4. Epistemic harm to the person who experiences fear Going back to school and being warmly wel- comed by friends and teachers, talking and socialising with friendly and respectful men – each of these experiences can provide information incompatible with the fear mem- ories and reduce fear generalization. However, individuals who avoid places, people or items that may elicit fear, due to their fear spreading, will not be exposed to the evidence that may help to disconfirm their fear. The limit placed on their horizons can therefore prevent them from modulating their fear responses, and thereby removing or reducing the limits on their horizons. The epistemic costs associated with fear generalization therefore include both those produced by the initial limits placed on people’s horizons and them having their horizons limited for a longer period. These are all ways in which the epistemic agency of the person undergoing fear generalization is curbed. – each of these experiences can provide information incompatible with the fear mem- ories and reduce fear generalization. However, individuals who avoid places, people or items that may elicit fear, due to their fear spreading, will not be exposed to the evidence that may help to disconfirm their fear. The limit placed on their horizons can therefore prevent them from modulating their fear responses, and thereby removing or reducing the limits on their horizons. The epistemic costs associated with fear generalization therefore include both those produced by the initial limits placed on people’s horizons and them having their horizons limited for a longer period. These are all ways in which the epistemic agency of the person undergoing fear generalization is curbed. Note here that for there to be a mnemonic injustice the person whose memory mechanisms are directly impacted by a phenomenon (stereotyping or fear Episteme 9 generalization) does not have to be experiencing an injustice themselves. For example, the person whose memories are shaped by social stereotypes, such that they fail to remember the strong contribution played by a woman of colour in a work project, experiences epistemic costs due to the effect, but it is far from obvious that they are sub- ject to an injustice. It is the woman whose contributions are not remembered, recog- nized and rewarded who is wronged and is subject to a mnemonic injustice. 4. Epistemic harm to the person who experiences fear However, some people who experience fear generalization are wronged – they are wronged by individuals who decide to impose trauma on them, for example, via sexual assault or rape, leading to fear that spreads, limiting, among other things, their epi- stemic horizons. We have argued elsewhere that the wrongs that lead to limits to epi- stemic horizons should be classified as epistemic injustices and examples of epistemic oppression (Puddifoot and Trakas 2023). However, for current purposes what is important to note is that sometimes people experience significant epistemic costs due to the mnemonic effect that is fear generalization, and sometimes these epistemic costs are the result of wrongful actions of others. In other words, people who are sub- jected to trauma are sometimes epistemically harmed by those who impose fear in them that generalizes. The latter point will be increasingly important in the following sections as we come to understand the injustices experienced by others. https://doi.org/10.1017/epi.2023.60 Published online by Cambridge University Press 5. Epistemic and non-epistemic harms to wrongful objects of fear Angela’s brother-in-law and a new neigh- bour, who had nothing to do with the abuse she suffered, come to personify her abusers Marina Trakas and Katherine Puddifoot 10 to her, permanently reminding her of the abuse. Because she projects her fear onto these two men, they are perceived by her as a threat and she may reject them even when they attempt to be friendly and supportive. This experience of rejection is just one example of how being perceived as a threat can have undesirable consequences. Those who become objects of fear may lose confi- dence in their approachability. They may feel constrained in how they can behave because they suspect that certain behaviours that they might otherwise display would elicit a fear response. Many are likely to feel a sense of injustice because they have not done anything to warrant the fear response. All of this may occur against a back- ground of ignorance about why they are being perceived as fearful and/or being rejected. There can therefore be accompanying epistemic harms of a lack of understand- ing of their own experience and why it is happening. In some cases, it may be the partners of those who experience fear generalization to whom fear is unduly spread, and in such cases there are additional specific practical and epistemic harms that may ensue. Disturbances in sexual life and avoidance of sexual encounters are very frequent after sexual abuse or harassment. Avoidance of sexual intercourse – even with established partners – is common, because rape victims fre- quently re-encounter not only specific stimuli that produce disturbing flashbacks but also a more general feeling of being pressured or coerced that acts as a reminder of the rape (Herman 1992; Remer and Elliott 1988; van Wijk and Harrison 2014). In many situations, the partner of the victim does not understand the impact of what hap- pened to them. A rape victim explains that ‘when I had that reminder [of the rape] I couldn’t sleep with my husband without remembering what happened to me. My hus- band didn’t understand what was happening to me’ (Easteal 1994: 102). If a victim of assault avoids sexual encounters, this may negatively impact the partner’s self- perception, leading them to falsely see themselves as unloved or not desirable, especially when the reason for the avoidance of the sexual encounters is not known. 5. Epistemic and non-epistemic harms to wrongful objects of fear Next let us consider how one person’s pathological fear overgeneralization can harm others. We can begin to do this by focusing on how the process of fear generalization, through which fear spreads from the original object of fear to other perceptually similar, or conceptually or contextually related objects, can lead some individuals or whole groups of people to be unduly perceived as frightening (i.e. (ii)). As mentioned in section 3, fear can generalize to items, individuals and places that have a physical resemblance to the item that originally elicited the fear. It can also generalize to items that are not perceptually similar but conceptually or contextually related to the original item (Bennett et al. 2015; Dunsmoor and Murphy 2015; Dymond et al. 2015, 2018). What this means is that people who are physically similar to someone who has, for example, posed a threat of physical violence, are likely to be an object of fear even if they themselves do not pose a threat. Similarly, fear may spread to people who are conceptually or contextually related to a person who is an original object of fear. For example, a person’s fear may spread from an initial object of fear to others who are viewed to be members of the same social group as this individual, even if they and the original object of fear are not perceptually similar. Alternatively, fear may spread to other members of the same social group but only in certain contexts or situations, such as in social events or in dark streets at night, or to members of the social group of people who were only circumstantially related to the traumatic past event. It is clear that the spread of fear to people with certain characteristics or conceptually or contextually related to the initial object of fear can be practically and epistemically costly for those who become unduly feared. It is possible to begin to see this by con- sidering the case of Angela in Kappler (2012). Angela is a rape victim who was sexually abused by family members as a child. She does not get along with her new partner’s family members with whom she is sharing a house because they remind her of her own family from whom she suffered abuse. https://doi.org/10.1017/epi.2023.60 Published online by Cambridge University Press https://doi.org/10.1017/epi.2023.60 Published online by Cambridge University Press 5. Epistemic and non-epistemic harms to wrongful objects of fear p ( ) Against this background of understanding from the literature on microaggressions, it is possible to see how strangers may be harmed by other people’s generalized fear: a person may be harmed by the evasive action of another who fears them due to fear gen- eralization. The target of the fear may experience emotional or psychological distress, such as embarrassment or stress, due to the specific action. But in addition to this, a person who is avoided through evasive action may be harmed because they experience the evasive action as a part of a pattern of similar slights or insults. Take for example a Black man in the UK who has experienced throughout his lifetime people crossing the road to avoid him. Imagine a woman crossing the road due to a generalized fear that is brought about due to a previous fear-inducing experience. The woman may cross the road due to a generalized fear of all men, or all men in a particular setting, such as in a dark street at night. However, for this specific Black man, the evasive behaviour could be experienced as if it was a part of a general pattern of evasive racial microag- gressions, with the act contributing to a significant cumulative harm. The specific eva- sive behaviour may simply combine with other experiences that the man has had, leading to a larger harm, or it may intensify his experiences of other similar acts in the future. Experiences of cumulative harms like this could be shared by people of sev- eral demographic groups, e.g. Muslims, working class men, those with mental health issues. The cumulative harm that is caused to strangers to whom fear has spread will often be non-epistemic. These harms involve emotional or psychological distress, and damage to self-esteem. Like people who experience fear generalization, strangers who experience being feared might place new constraints on their behaviour, e.g. they may avoid being in similar situations where they suspect they will be deemed a threat by strangers. However, it is likely that there will be associated epistemic harms. y p Due to the fact that small, subtle acts of evasion like those found in microaggressions can be attributed various different plausible explanations (Wang et al. 2011), those who are feared may struggle to establish with any certainty whether or why they are being avoided. 5. Epistemic and non-epistemic harms to wrongful objects of fear The falsity of the belief and the misperception involved are epistemic harms, but at the same time are likely to bring significant emotional and psychological harms. Fear does not only spread to and harm those who are close to the person who experi- ences fear generalization. Fear can spread to, and consequently harm, anyone who is wrongly the object of fear, by leading them to be perceived as threatening. Take, for example, the actions of a person who has suffered sexual assault and becomes distressed when seeing someone who is similar to the person who assaulted them. Let us assume that the person undergoing the fear generalization takes evasive action, e.g. leaving an enclosed space (e.g. a lift) that they share with the person who is unduly the object of their fear, or crossing the street to get away from them. This type of evasive action may contribute to harm, especially if it is experienced as a part of a more general pattern of experiences of being treated as threatening and avoided. To illustrate this point, it is useful to turn to the literature on microaggressions. Microaggressions are ‘subtle yet harmful forms of discriminatory behaviour experienced by members of oppressed groups’ (Friedlaender 2018: 5). They take the form of slights or insults that may be imperceptible to people who are not sufficiently attuned to them. The harms that are caused by microaggressions might in some cases be small if they occurred in isolation but can be experienced as significant where they occur within a broad pattern of similar experiences that are due to systems of oppression. As Rini puts the point, a microaggression is ‘a relatively minor insulting event made dispropor- tionately harmful by taking part in an oppressive pattern of insults’ (Rini 2018: 332). Just some of the harms that are associated with the accumulation of microaggressive Episteme 11 experiences are stress, anxiety, depression, high blood pressure, insomnia, eating disor- ders, social withdrawal, PTSD, suicidal ideation (Friedlaender 2018). The harms of microaggressions can accumulate in different ways. The harms of various microaggres- sions experienced by the same person (or group) may accumulate by simply adding together until they reach some threshold of more significant harm. Alternatively, the harms may intensify each other, with earlier harms both adding to and intensifying harms experienced at a later time (Friedlaender 2018). https://doi.org/10.1017/epi.2023.60 Published online by Cambridge University Press 5. Epistemic and non-epistemic harms to wrongful objects of fear They may fail to reach the level of confidence in their beliefs to achieve knowl- edge. This ‘attributional ambiguity’ (Wang et al. 2011) makes people who experience small, subtle acts of evasion susceptible to forming false beliefs about why they are taken to be threatening. This point is illustrated by the example of a Black man who experiences evasive behaviours because of his gender or due to the context in which he is encountered. He might reasonably, based on his past experiences, interpret the evasive behaviour as a racial microaggression. In addition to this, in cases where people are the target of evasive behaviour due to other people’s fear, it may be difficult for those who experience being avoided to articulate the harm that they have experienced. Unless there are shared hermeneutical resources within a socio-epistemic environment that can be used to capture and articulate the harms associated with being avoided due to being unduly feared, those who have the experience may struggle to articulate the harm that they experience (see Fatima 2020, for a discussion of how similar effects can be found in cases of microaggression). Experiencing avoidance behaviour due to being unduly Marina Trakas and Katherine Puddifoot 12 feared can therefore bring significant epistemic harms. It can place those who are feared and avoided in a situation in which they struggle to know what they have experienced and why they have experienced it, as well as struggling to articulate what they have experienced to others. Although we have focused here on evasive behaviours that are akin to racial micro- aggressions – small, subtle acts that could be viewed to be minor and are attributionally ambiguous – fear generalization has the potential to produce other, less subtle forms of harm to those who are unduly the object of fear. If someone is feared by a potential employer, they may not be given a job opportunity. If they are feared by a teacher, they may not be given the educational support that they require, and that others receive. If someone is feared by a judge or juror, they may not be given a fair hearing in a crim- inal trial, and so on. More generally, where those people who have experienced fear that has spread are in positions of power or influence over those who they fear, there can be significant negative impacts for the latter. 5. Epistemic and non-epistemic harms to wrongful objects of fear What this suggests is another way in which the negative impact of being feared is disproportionately spread across different social groups. Those who are members of marginalized and otherwise disadvantaged groups are more likely to be on the less powerful side of a power imbalance, and therefore more likely to be harmed because people who have power and influence over them unduly fear them. There is a further set of costs that members of marginalized groups may experience more than others due to being unduly feared. As Srinivasan (2018) notes, members of marginalized groups can face additional penalties, over and above those experienced by the general population, if they display negative affective responses like anger, even when those affective responses are apt. They can be forced into a situation in which they can- not express their apt emotions without compromising their prudential ends. The case of fear generalization seems to be no exception. Members of marginalized groups who express their disappointment or discontent at being unduly feared, or because they face adverse consequences as a result of being unduly feared, may face especially harsh penalties from others, such as being dismissed as oversensitive and suffering social exclusion. Consequently, they may be forced to choose between expressing an apt affective response and achieving other important goals – what has been described by Srinivasan (2018) as an affective injustice. What we have found in this section, then, is that there are multiple ways that people can be harmed due to unduly being an object of fear. When they are falsely viewed as an object of fear, they are misperceived and, through this process of misperception, can experience significant harm. The misperception happens due to the way that human memory systems operate in response to traumatic and fear-inducing events. This is the same memory process through which the person experiencing fear generalization undergoes the epistemic harms outlined in section 4. What this means is that in cases of fear generalization the object of fear can experience significant epistemic and non-epistemic harms due to the operation of memory mechanisms that prevent the person directly experiencing the effect from gaining knowledge in general, and more specifically leads that person to misperceive the object of fear. https://doi.org/10.1017/epi.2023.60 Published online by Cambridge University Press 6. Epistemic and non-epistemic harms for others In many cases, then, where a person is harmed as a result of another person experien- cing fear generalization, the harm occurs as a result of the former person unduly being the object of fear. At other times, however, people may suffer from practical, affective https://doi.org/10.1017/epi.2023.60 Published online by Cambridge University Press Episteme 13 and epistemic harms without being the object of fear that has generalized (i.e. (iii)). In this section, we show that the same fear-spreading mechanism that harms the primary subject of fear generalization can also bring epistemic and non-epistemic harms to peo- ple close to them. This means that the actions of people who induce trauma and fear on a victim can indirectly harm those who are close to the victim. It is possible to begin to see how people other than the object of fear can be harmed by considering the overprotective behaviour that people who experience fear that spreads sometimes display towards their children. As described in the opening quotes from parents displaying generalized fear (Christie et al. 2023), the spread of the fear can lead parents to close off opportunities for their children, due to fear that they will be harmed. This is true of people who have experienced accidents, but also those who have had trauma imposed on them by others, such as women who have been raped (see e.g. Easteal 1994: 32). Rape victims can display overprotective behaviour as the result of fear generalization: these rape victims do not only fear for themselves but also for those they love and consider to be in need of protection. They fear that their children will have the same experiences that they have had. The overprotective behav- iour can be expressed in the control of their children’s social contacts, or in refusing to leave their children with other people. The behaviour can cause substantial practical, affective and epistemic harms to the children. p For instance, children of rape victims may have both their social lives and epistemic horizons deeply affected. They may be forbidden from spending time with certain friends and prevented from visiting friends at their parental homes. They may be for- bidden from going out to certain places, such as specific neighbourhoods, parties, pubs and concerts. If this happens, they will miss the opportunity to gain experiences and social knowledge that could be acquired in these contexts. https://doi.org/10.1017/epi.2023.60 Published online by Cambridge University Press 6. Epistemic and non-epistemic harms for others Because rape victims project their own fears into their children’s life, they sometimes distort their children’s reality, making the children believe that they are weaker than they are and keeping them in a permanent but unnecessary state of alarm (Kappler 2012). Children may perceive the world as a dangerous place and become fearful and insecure, and feel extremely lonely. In fact, restriction of childhood experiences can facilitate later development of fear and anxiety (Pittig et al. 2018). Prior exposure to stimuli before they become feared, a phe- nomenon known as ‘latent inhibition’ (Vervliet et al. 2010), attenuates subsequent fear acquisition and fear generalization related to those stimuli. Because parental overpro- tective and controlling behaviours may prevent children from interacting with certain people and frequenting certain places, children may fail to acquire information that can serve as a form of latent inhibition that buffers against the potential later develop- ment of fears. What is more, because most children do not know anything about their mothers’ past traumatic experiences, they may fail to understand the restrictions that their mothers impose on them as well as their overprotective attitude. This lack of understanding may lead to the formation of false beliefs that their mother is irrational, incoherent and not always functional (Kappler 2012). These epistemic harms can bring more practical harms: children may distance themselves from their parents, for example. It is not only children who can be indirect victims of the fear generalization that occurs due to trauma. Other family members and people close to a trauma survivor may be infected with and mimic the traumatic symptoms of the direct victim. This may result from identification with the primary victim (Emm and McKenry 1988; Schwerdtfeger et al. 2008). Although it is true that feelings of anger and guilt are the most common reactions by family members of victims of trauma, some people, Marina Trakas and Katherine Puddifoot 14 especially partners, present PTSD symptoms associated with their connection with the trauma survivor (Christiansen et al. 2012; Remer and Elliott 1988; Russin and Stein 2021; Schwerdtfeger et al. 2008). Hypervigilance, fear generalization and fear reactions can be among the symptoms. This means that the fear generalization suffered by the primary victim can spread beyond the victim and infect people close to her. Fear gen- eralization can thus also be acquired by vicarious experience (Pittig et al. 2018; Rachman 1977). 6. Epistemic and non-epistemic harms for others A veteran’s wife, for example, became as sensitive to external stimuli as his partner: ‘I hear a noise and it disturbs me’ (Dekel et al. 2005: 28). In this case, she is indirectly affected by her husband’s generalized fear: she vicariously experiences stimuli as threatening and dangerous because of the trauma experienced by her hus- band. This is likely to bring about affective and practical harms, negatively impacting her well-being and performance of everyday tasks, as well bringing the epistemic harms of perceiving and judging external stimuli in the wrong way, for example, per- ceiving and judging certain people, places and other stimuli as dangerous when they are not. Eventually, this may also lead her to avoid certain people and contexts, and lose opportunities to get information and gain epistemic goods. pp g g p g Although the kinds of harms described in this section differ from those experienced by people who are unduly feared, we have shown that people emotionally close to the primary victim of a traumatic event can also suffer significant harms. In both cases, due to the fear generalizing memory mechanism, the person who originally undergoes fear generalization misses out on knowledge and another person is harmed. When the per- son harmed is an object of fear, the epistemic harms mainly relate to self-knowledge and the understanding of their own experiences. When the person harmed is not feared, the epistemic harms are more related to misperceptions and misbeliefs about the dan- gerousness of other people and situations, and missed opportunities to gain epistemic goods. In this sense, the latter is similar to the epistemic harms suffered by the primary victim who suffers from fear generalization. g In sum, the examples mentioned above show that practical, affective and epistemic harms can be experienced by a person as a result of the way another person’s memory operates after a traumatic event: by overgeneralizing fear. These harms can be experi- enced by those who are unduly feared and by relatives and people close to the primary victim who do not become the object of fear. 7. From harms to wrongs Sections 3–6 have shown that cases of fear generalization share the following features with stereotype-based mnemonic injustice, and testimonial injustice: a person misses out on knowledge and, via the same cognitive mechanism, other people are epistemi- cally, affectively and practically harmed. What cases of fear generalization lack, however, is the role of stereotypes or prejudice in the production of the epistemic, affective and practical harms. Testimonial injustice arguably seems so unjust because of its discrim- inatory aspect: people are disbelieved due to a systematic prejudice against those who have their social identity, where others, with a different social identity, would be believed (see e.g. Fricker 2017). Similarly, stereotype-based mnemonic injustice argu- ably seems so unjust because people’s actions and attributes are misremembered to their disadvantage due to an aspect of their social identity, and others with different social identities do not face the same risk of this happening to them. To make it seem convincing that cases of fear generalization involve injustice, it would therefore be useful to show that there are similar perniciously discriminatory outcomes that hap- pen in some cases of fear generalization, even in the absence of stereotypes, and that these pernicious outcomes are the result of wrongful acts that lead to the fear that spreads. Let us commence with the second point. The fear generalization that leads to the epistemic, affective and practical harms described below can be the result of the inde- pendently wrongful actions of others, and these epistemic, affective and practical harms are a part of the consequences of these wrongful actions.5 We have argued elsewhere that generalized fear and the epistemic costs it brings to the person directly experiencing the fear should be deemed wrongful if they have their source in the wrongful act of choosing to impose trauma via actions like rape or sexual assault (Puddifoot and Trakas 2023; see also section 4). Here we argue that the wrong extends beyond the ini- tial target of the traumatic experience, who experiences fear that generalizes, and that others who are epistemically, affectively and practically harmed by the generalized fear also count as wronged. Our suggestion is that the latter individuals experience epi- stemic, affective and practical harms due to people’s wrongful choices to inflict trau- matic experiences like rape or assault. There is a wrongful action committed, so these harms are not the result of mere bad luck. 6. Epistemic and non-epistemic harms for others It is worth highlighting that these harms do not necessarily take place every time that the person who suffers from fear general- ization is epistemically harmed: for any case of fear generalization there is likely to be far more contexts and situations where the primary victim is harmed than those where others are harmed by her fear generalization.4 Nonetheless, the harms to others are significant and worth marking. 4However, it’s important to note that these harms are not entirely distinct and separate in all cases: there are always interconnections between the harms of the primary and the secondary victims (Remer and Elliott 1988). Much as the harm experienced by the primary victim impacts their immediate family mem- bers, the harm endured by these relatives often reciprocally affect the primary victim. For example, in some cases, the epistemic harms experienced by relatives and others close to the victim can simultaneously main- tain and even exacerbate the symptoms of the victim. Overprotective behaviour towards a victim is a com- mon reaction among family members too, particularly when the victim is a child or a rape survivor (Christiansen et al. 2012; Emm and McKenry 1988; Gregory et al. 2017b). This overprotective behaviour can be exacerbated by the family members experiencing vicarious fear. Certain people, places and contexts can be perceived and judged as threatening not solely or necessarily for the secondary victim himself or herself, but instead for the original victim. The overprotective attitude that this can produce or maintain https://doi.org/10.1017/epi.2023.60 Published online by Cambridge University Press 15 Episteme Episteme increased monitoring behaviour, excessive involvement in the victim’s activities, increased restrictions and the victim being denied autonomy. Each of these things has the potential to affect the victim’s interests and well-being as well as limit their epistemic horizons, preventing them from gaining knowledge that would be available to them in contexts from which they are excluded. The information that is missed could include knowledge that would modulate their fear responses, so this process can sustain and even reinforce the epi- stemic harms and exclusion suffered by them. 7. From harms to wrongs Therefore, these individuals, akin to the pri- mary victims of these traumatic experiences, are also wronged, and this wrongfulness constitutes an injustice. In fact, the idea that the harm can extend beyond the primary victim is widely accepted in psychiatry: the idea of ‘secondary victim’ or ‘secondary sur- vivor’ of trauma has been widely used for some time (Christiansen et al. 2012; Remer and Elliott 1988; Remer and Ferguson 1998). More recently, the Diagnostic and Statistical Manual of Mental Disorders (5th ed.; DSM–5; American Psychiatric Association 2013) has explicitly recognized that PTSD symptoms can develop after increased monitoring behaviour, excessive involvement in the victim’s activities, increased restrictions and the victim being denied autonomy. Each of these things has the potential to affect the victim’s interests and well-being as well as limit their epistemic horizons, preventing them from gaining knowledge that would be available to them in contexts from which they are excluded. The information that is missed could include knowledge that would modulate their fear responses, so this process can sustain and even reinforce the epi- stemic harms and exclusion suffered by them. y 5As Sartorio (2016) claims, ‘The standard view on wrongness is that its being wrong for S to do A amounts to, or at least entails that, S ought to have refrained from A-ing’ (24), and it is uncontroversial that in cases like sexual assault and rape the perpetrators of the act morally ought to have refrained from the actions that they engaged in. https://doi.org/10.1017/epi.2023.60 Published online by Cambridge University Press Marina Trakas and Katherine Puddifoot 16 ‘learning that the traumatic event(s) occurred to a close family member or close friend’. In the legal system of some countries secondary victims are also treated as if they are wronged, for example, in the US relatives of a sexual assault and child abuse victims can also claim for victim compensation benefits (see e.g. South Dakota Department of Public Safety n.d.; State of Connecticut Judicial Branch n.d.). Here, we have embraced the notion that the wrong of the trauma goes beyond the impact on the primary victim and extends to the impact on those in their immediate surroundings. Thus, it is not only the primary victim who is wronged when someone inflicts trauma. But we have taken this idea a step further to include individuals who may not have a close connec- tion to the primary victim. 7. From harms to wrongs They too, we suggest, are also indirectly wronged by the fear- inducing act because they are unduly feared. g y y Concerning the perniciously discriminatory outcomes, as in cases of stereotype- based mnemonic injustice and testimonial injustice, some people are, due to their mar- ginalized or otherwise ‘more than ordinarily vulnerable’ (Sellman 2005: 4) social iden- tities, more susceptible than the general population to experiencing the negative effects of other people’s fear generalization due to the disparity of risk that they face. This point finds support in the discussion found in sections 5 and 6 where it was shown that there are disparities in the impact of fear generalization. Members of marginalized groups are more likely than others to be harmed by the subtle acts of avoidance (e.g. leaving a lift, crossing a road) because they are more likely to experience the avoidance behaviour within a broader pattern of exclusion and oppression. In addition to this, marginalized society members are more vulnerable to the negative reactions of people in power whose decisions are shaped by their fears. Where they live more precarious lives as a part of their marginalized status, they may also suffer more from others by being over- looked. Because there is an unjust distribution of the risk of harm, marginalized indi- viduals are more susceptible to harm due to their already marginalized status. This disproportionate risk of harm can be explained in terms of vulnerability. Members of marginalized groups are vulnerable due to their having less ability to pro- tect their own interests (Goodin 1985). Not only do they experience the ‘inherent vul- nerability’ (Mackenzie 2014; Mackenzie et al. 2014) that is characteristic of all human lives due to our corporality, dependency on social interaction and so forth (e.g. Butler 2004, 2016; Fineman 2010; MacIntyre 1999), they also experience ‘situational vulnerability’ (Mackenzie 2014; Mackenzie et al. 2014). Situational vulnerability is con- text dependent. It is caused by the personal, social, economic or environmental situ- ation of an individual or group. Social marginalization involves occupying social, economic and often environmental conditions in which one becomes more vulnerable because one is less able to protect one’s interests. One way to understand the injustice of mnemonic injustice is, then, that already situationally vulnerable individuals are exposed to additional risk of harm due to the trauma wrongfully inflicted on others. https://doi.org/10.1017/epi.2023.60 Published online by Cambridge University Press 7. From harms to wrongs It is not only people who are marginalized because of their social identity who are disproportionately at risk of harm due to fear generalization. The intimates of people experiencing fear generalization who are the focus of discussion in section 6 – the chil- dren and partners and others close to those experiencing fear generalization – are also especially at risk of harm. Children and other intimates are situationally vulnerable not because of their social or economic status, but due to their personal relationship with the primary victim of trauma. Their closeness to, and sometimes identification with, a person who has experienced trauma and subsequently fear that has generalized makes it harder for them to protect their own interests, for example, meeting their own emotional needs, and brings them additional risk of harm. Their vulnerability 17 Episteme may be compounded by social and institutional structures that fail to provide adequate support for their intimates (Gregory et al. 2017a, 2017b; Mullin 2014; Russin and Stein 2021), but the closeness to the person experiencing fear suffices for vulnerability. Children of people experiencing fear generalization are especially vulnerable because children are inherently dependent on adult caregivers – dependent on their caregivers both to support their survival and their flourishing (Kittay 2020; Lotz 2014; Mullin 2014). However, the caregivers they depend on are not only unable to provide them with the necessary support to meet their objective needs, like a strong social life and overall well-being, but may also exhibit overprotective behaviour and impose restric- tions (Easteal 1994; Pittig et al. 2018) that run counter to these basic needs. ( g ) What we find when it comes to fear derived from trauma that generalizes, then, is that members of marginalized and other situationally vulnerable groups are some of those most negatively impacted by others’ fear. Here we encounter a second reason to consider the existence of an injustice: some people face a higher level of risk than others, and this includes those who are already vulnerable. This suggests the presence of a discriminatory aspect that further supports the idea that there is an injustice. 6We have argued elsewhere (Puddifoot and Trakas 2023), when discussing the epistemic harms experi- enced by the person suffering from fear generalization, that the nature and the extent of the harms, as well as the existence of a clear agent (individual or institutional) who inflicts those harms (whether or not they are aware) through their actions, were factors to consider when assessing whether harms constitute wrong- doing and injustice. We have argued that the consequences of recognizing the harms as an epistemic wrongdoing, for example, in the legal domain, may also be important to determining whether to classify the harms as injustices. Here we highlight another aspect that seems relevant – and perhaps even more fundamental – to determining whether a harm produced by someone else’s actions is a wrong, and thus, an injustice: the background situation of the person affected. Based on our previous arguments, it seems that the particularities of the situation of the person affected, in this case their situational vulnerabil- ity, magnify the consequences of actions inflicted upon them, thereby intensifying the resulting harms. 7. From harms to wrongs By arguing that there is a mnemonic injustice when vulnerable individuals, that is, individuals who undergo a disproportionate risk of harm, suffer from the consequences of fear generalization due to trauma, we are able to make a plausible distinction between cases where harms seem to be injustices and those where they seem not to be. Take, for example, a case where a student has a fear response towards their male lecturer due to a previous experience of sexual assault by a male in a position of authority over her. The lecturer has 400 students and would not recognize the student on the street. However, the lecturer misses out on some knowledge because their student does not tell them, for example, that their lecture materials are not accessible to people with a medical condi- tion that she has. The student does not pass on this information because the lecturer elicits a fear response from her. Here the lecturer suffers an epistemic cost due to the student’s fear and could suffer practical costs, say, if another student officially complains about the inaccessibility of their lectures. However, it does not seem right to say that the lecturer is wronged and experiences an injustice. Our account can handle this type of case, suggesting that there is no injustice and no wrongdoing suffered by the lecturer because the lecturer is not in a situation of vulnerability: the lecturer does not experi- ence a disproportionate risk of harm due to their social or personal situation. The lec- turer is neither socially marginalized, given their status as a lecturer, nor in a close relationship with the student. So the lecturer may suffer from epistemic, affective or practical costs due to the avoidance behaviour of their student, but the lecturer is not wronged and does not experience injustice.6 6We have argued elsewhere (Puddifoot and Trakas 2023), when discussing the epistemic harms experi- enced by the person suffering from fear generalization, that the nature and the extent of the harms, as well as the existence of a clear agent (individual or institutional) who inflicts those harms (whether or not they are aware) through their actions, were factors to consider when assessing whether harms constitute wrong- doing and injustice. https://doi.org/10.1017/epi.2023.60 Published online by Cambridge University Press 7. From harms to wrongs We have argued that the consequences of recognizing the harms as an epistemic wrongdoing, for example, in the legal domain, may also be important to determining whether to classify the harms as injustices. Here we highlight another aspect that seems relevant – and perhaps even more fundamental – to determining whether a harm produced by someone else’s actions is a wrong, and thus, an injustice: the background situation of the person affected. Based on our previous arguments, it seems that the particularities of the situation of the person affected, in this case their situational vulnerabil- ity, magnify the consequences of actions inflicted upon them, thereby intensifying the resulting harms. https://doi.org/10.1017/epi.2023.60 Published online by Cambridge University Press 18 Marina Trakas and Katherine Puddifoot It might be responded that a disparity of risk of the type experienced by vulnerable individuals from other people’s generalized fear does not on its own constitute a wrong or injustice. Were the risk of harm, or the disparate risks of harm, merely the result of bad luck then it might be argued that the disparity does not constitute an injustice, and no-one wronged. However, this objection does not get off the ground when it comes to individuals who face additional harm due to their marginalized social status. This is because when people experience a heightened risk of the types of harms we have described due to their marginalized status in society, this is best explained by oppressive social or institutional structures, historical and continuing inequalities, and so forth. There is a strong case for saying that if someone experiences a higher risk of harm due to social and institutional structures like these, they are not simply unlucky, but instead they are wronged. They are wronged in virtue of the nature of the social and institutional structures that marginalize them. g It might also be responded that those who impose trauma by, for example, sexually assaulting someone, should not be viewed as wronging anyone who is thereby harmed downstream because they could not be expected to foresee the downstream harm. 7Take, for example, Vargas’ (2005) discussion of a person, Jeff, who becomes a jerk. Vargas outlines how one might approach assessing Jeff’s moral responsibility: ‘Since Jeff is a jerk, and unreflective about his behavior, we have to find a prior moment when he could both act freely and reasonably foresee the out- come (of wrongfully poor treatment of his employees)’ (277). The suggestion in this quote is that the ques- tion of responsibility may hang on Jeff’s ability to foresee an outcome; however, the wrongfulness of his action does not depend on the foreseeability of its consequences. What is not under question is whether Jeff’s jerk-like treatment is wrongfully poor (see Rudy-Hiller 2022 for further examples). 7. From harms to wrongs Similarly, the harms that https://doi.org/10.1017/epi.2023.60 Published online by Cambridge University Press 19 Episteme people indirectly experience due to other people’s trauma can be wrongful, and wrong- ful because they are the consequence of wrongful actions of those who inflict trauma, even if the wrongdoer could not foresee, or be reasonably expected to foresee, them.8 g y p It is important to stress at this point that it is not only individuals, but can also be social or institutional structures, and the decision makers within institutional structures, that are responsible for the wrongdoing. Take, for example, a male police officer who works within a police service that fails to address widely acknowledged institutional misogyny. The police officer engages with impunity in actions constituting sexual har- assment. A victim of the police officer’s harassment experiences fear that spreads to others in her life and negatively impacts her relationships with them, causing them harm. Here there seems to be a strong case for saying the police officer engages in wrongdoing. But there is also good reason to think that the institution and those work- ing within the institution have done something wrong. In this case, those in charge in the institution have not taken the requisite steps to prevent the harm, initial fear or the generalized fear that ultimately leads to the mnemonic injustice. That is, they have not made changes to those institutional structures that are allowing the police officer to act with impunity. Those in power and influence in the institution have been negligent, fail- ing to fulfil a duty of care in protecting the victim of harassment from harm. This harm has directly produced fear that has in turn produced harm towards others. What this example suggests is that the wrongdoing of mnemonic injustice can be an interpersonal injustice: i.e. inflicted by one person (the perpetrator who produces the fear) on another (those unduly feared or whose intimates experience generalized fear) via a person who is directly harmed. it can also simultaneously be both an interpersonal and institutional injustice, where the action or inaction of an institution contributes to a person experi- encing fear that harms another person who is intimate with them or to whom fear is unduly spread, as in the police case. We are now in a position to see how the memory mechanisms that are causally responsible for fear generalization are implicated in injustice. 7. From harms to wrongs This claim might initially seem to be in line with discussions of moral responsibility, culp- ability and blameworthiness, where it is sometimes argued that a person is only morally responsible, culpable or blameworthy for an event that is a consequence of their actions if they have a belief about the event being a consequence of their action (Zimmerman 1997: 420), or if it is reasonably foreseeable that the event will follow their action (Fischer and Tognazzini 2009; Sartorio 2016; Vargas 2005). However, it is important to distinguish claims about wrongdoing from claims about moral responsibility, culp- ability and blameworthiness. In fact, it is often assumed in debates about moral respon- sibility, culpability and blameworthiness that there can be wrongdoing where one person is harmed as a consequence of the actions of another person even if the person who engages in the harmful action is not aware, or could not reasonably be expected to be aware, of the harmful consequences of their actions. The question of responsibility, culpability or blameworthiness may rest upon the awareness of the consequences of action in such discussions, but the wrongfulness of the action does not.7 We have argued elsewhere (Puddifoot and Trakas 2023) that the agent’s intention, along with their knowledge and awareness at the time of the action, may or may not be factors in determining the agent’s responsibility, culpability or blameworthiness, but do not determine the wrongs suffered by a person as a result of the action. We adopted – and here continue to adopt – a victim-centred approach, according to which the nature of a wrong is determined by the experiences of the victims themselves rather than being contingent on some cognitive condition of the agent. Think, for example, of a deeply sexist person who cannot foresee that they could harm a woman by denying that she has strong intellectual abilities, thinking both that women lack these abilities and that they place no value in them. The fact that the sexist person cannot foresee the harm does not mean that their speech act is not wrongful. 7. From harms to wrongs They are a means through which epistemic (as well as affective and practical) harms can be caused by those who inflict trauma to people who directly experience fear generalization. They are also a vehicle through which other people – to whom fear is wrongfully spread or who are intimates of people directly experiencing fear generalization – can be epistemically, affectively and practically harmed. The harm to other people can constitute an injustice where the harm is the result of the independently wrongful choice to inflict harm and the risk of harm is unevenly distributed, with marginalized and otherwise vulnerable individuals most at risk of harm. 8Our treatment of the injustice here is very much in the spirit of Fricker’s approach to testimonial injust- ice. In work from 2017 clarifying her position, she says that “In testimonial injustice the absence of delib- erate, conscious manipulation is definitive, at least in my conception” (2017: 54). https://doi.org/10.1017/epi.2023.60 Published online by Cambridge University Press 8. Revisiting the parity claim: fear generalization-based mnemonic injustice, stereotype-based mnemonic injustice and testimonial injustice It is now possible to revisit the parity argument outlined in section 2. Stereotype-based mnemonic injustice has been argued to be similar in form, and severity, to testimonial injustice (Puddifoot forthcoming). Both involve epistemic harms to an individual that prevent them from gaining knowledge, while also bringing epistemic, affective and prac- tical harms to others. It was argued on this basis that mnemonic injustice should be 8Our treatment of the injustice here is very much in the spirit of Fricker’s approach to testimonial injust- ice. In work from 2017 clarifying her position, she says that “In testimonial injustice the absence of delib- erate, conscious manipulation is definitive, at least in my conception” (2017: 54). https://doi.org/10.1017/epi.2023.60 Published online by Cambridge University Press Marina Trakas and Katherine Puddifoot 20 taken seriously alongside testimonial injustice, and efforts should be directed towards addressing both. Efforts that focus on changing human psychologies and social structures are available to achieve this goal. The parity claim can now be extended to mnemonic injustice that occurs via fear generalization. Fear generalization also involves epistemic harms to an individual (i.e. the primary victim who is directly experiencing fear that generalizes), while the same fear general- izing memory mechanism brings epistemic, affective and practical harms to others. The severity of the epistemic harm to the person who directly experiences fear generalization will often not only be as strong, but will in fact be much stronger, than the epistemic harms experienced by the person who is complicit in either testimonial injustice or stereotype-based mnemonic injustice. A person who is complicit in testimonial injustice will miss out on knowledge in specific instances when their prejudice towards members of a social group prevents them from giving credence to their testimony. A person whose memory systems are implicated in stereotype-based mnemonic injustice may misremember the details of particular events, and they may not remember certain beha- viours or attributes that some people, whom they stereotype, have displayed. But a per- son who directly experiences fear generalization may withdraw from numerous social, educational and work settings. They may miss out on knowledge that can be acquired in each of the settings that they choose not to enter. Some of this knowledge could be cru- cial to flourishing in society, such as the information ordinarily gained through educa- tion or job-relevant insider information. https://doi.org/10.1017/epi.2023.60 Published online by Cambridge University Press 8. Revisiting the parity claim: fear generalization-based mnemonic injustice, stereotype-based mnemonic injustice and testimonial injustice What this suggests is that the epistemic, affective and practical harms to the person whose memory mechanisms are implicated in injustice via fear generalization will often be not only as severe but in fact more severe than those suffered by perpetrators of stereotype-based mnemonic injustice and testimonial injustice. Meanwhile, the epistemic, affective and practical harms endured by other people harmed by fear generalization will often be of comparable levels of severity to that experi- enced by people who are victims of testimonial injustice or stereotype-based mnemonic injustice. As outlined in section 5, people who are wrongfully the object of fear may experi- ence stress, distress and confusion in response to other people’s fear of them. They face the risk of being denied opportunities in the workplace, education or similar settings where those giving out the opportunities fear them. They may lack an understanding of them- selves and their place in society, due to the ambiguity that they may experience about why they are feared, why they miss out on opportunities and so forth. These epistemic, affective and practical harms closely resemble those that are suffered by people whose tes- timony is unjustly discredited, or whose positive attributes and contributions are misre- membered or forgotten due to the influence of stereotypes on memory. In addition to this, in cases of fear generalization there can be the extra epistemic, affective and practical costs to those who are intimates of people who directly undergo fear generalization. As argued in section 6, they can experience many epistemic, affective and practical harms, similar to those of the primary victim, that is, severe and widespread harms. A further similarity between fear generalization-based mnemonic injustice, stereotype-based mnemonic injustice and testimonial injustice is that each can be tackled by making changes to human psychologies or by focusing on social structures. It is possible to tackle mnemonic injustice towards those who are unduly the object of fear by addressing the psychology of those who experience fear generalization, e.g. by ensuring that they have access to appropriate trauma therapy so that their responses are not so influenced by their fear (Callender and Dartnall 2011). The harms suffered by the close relatives of the primary victim of trauma and fear generalization can also be Episteme 21 mitigated through the provision of appropriate therapy. 8. Revisiting the parity claim: fear generalization-based mnemonic injustice, stereotype-based mnemonic injustice and testimonial injustice This is particularly important, given that the adverse effects on those close to the primary trauma victim often remain largely unnoticed and unrecognized even by professionals (Gregory et al. 2017a, 2017b; Russin and Stein 2021). On the other hand, mnemonic injustice can be tackled by mak- ing direct changes to social or institutional structures, e.g. taking an evidence-driven approach to changing policing practices to reduce the likelihood that people will experi- ence fear-inducing events like sexual assault or rape in high-risk environments, for example, in schools and workplaces; or targeting the financial, employment and housing instability of women at risk of experiencing sexual abuse (Heller 2016). In sum, the epistemic and practical harms associated with fear generalization are comparable to, and in some cases more severe and numerous than, those of testimonial injustice and stereotype-based mnemonic injustice. In addition to this, the strategies to tackle fear-based mnemonic injustice are similar to those needed to tackle stereotype- based mnemonic injustice and testimonial injustice. For those concerned about the epi- stemic and practical harms that follow from testimonial injustice or stereotype-based mnemonic injustice, this should give reason to also be concerned about, and driven to address, the mnemonic injustice that pathological fear generalization brings. https://doi.org/10.1017/epi.2023.60 Published online by Cambridge University Press 9. Broadening the search for mnemonic injustice As we have seen, for example, Marina Trakas and Katherine Puddifoot 22 intimates of those who experience fear generalization, including partners and children, can experience high risk of practical, affective and epistemic harms because of their rela- tionship to someone experiencing fear generalization. The high risk of harm is due to their intimacy with the person undergoing fear generalization rather than due to their social status or membership of a particular social group. In other cases, a person’s social identity contributes towards them experiencing fear generalization-driven mnemonic injustice, because it is due to their social identity that they are disproportionately at risk of harm due to fear generalization. But they are not harmed by the influence of a stereotype on memory. A person experiencing fear gen- eralization may engage in avoidance behaviour towards all members of a particular social group. Any harm caused by this avoidance behaviour is related to the social iden- tity of the person harmed: they are harmed due, in part, to an aspect of their social iden- tity. However, the avoidance behaviour will not always be related to a stereotype, that is, to the association of all members of their social group (more strongly than others) with a particular trait or characteristic (Puddifoot 2021). Sometimes a person will respond fearfully to superficial perceptual features, such as certain clothes, or particular words or colloquial expressions that remind them of a traumatic event, when found on or spoken by members of a particular social group. At other times, fear is a response to contextual features: members of a social group may be feared only in certain contexts or situations, such as in social events or in dark streets at night. In these cases, the harm is not due to a simple association between all members of a social group and a certain trait or traits. Third, the arguments in this paper suggest that the epistemic harms experienced by the person whose memory systems are implicated in mnemonic injustice are not neces- sarily closely tied to the harms inflicted on others. In stereotype-based mnemonic injustice, one person misremembers another person, thereby suffering the epistemic cost of missing out on knowledge, and another person is harmed by this act of misre- membering. In fear generalization-driven mnemonic injustice, the person whose mem- ory systems are primarily implicated in the injustice (i.e. 9. Broadening the search for mnemonic injustice As we have seen, mnemonic injustice was originally defined as a kind of injustice that members of social groups that are stereotyped suffer due to the way that stereotypes shape other people’s recollections of them (Puddifoot forthcoming). What the discus- sion in this paper suggests is that there is a broader category of memory effects that should be classified as mnemonic injustices. First, our argument suggests that mnemonic injustices can occur via non-declarative as well as declarative memory. It might be tempting to accept that episodic recollections of the past and semantic memories can be implicated in injustices towards others, because they can misrepresent the acts or character traits of individuals, but to deny that other types of memory effect can be implicated in injustice. However, those who experience fear generalization-driven mnemonic injustice are not (or not always) harmed by having their acts or characteristics misremembered. For example, in cases of fear generalization people can be harmed by being feared or, in the case of children of overprotective parents, by being denied certain opportunities that they might other- wise have experienced. Alternatively, they may be harmed by vicariously experiencing the generalized fear of an intimate. But rarely, if ever, are they harmed by being misre- membered. This suggests that while in mnemonic injustice the harm is always produced by the operation of memory mechanisms, the harm is not always inflicted directly via the act of misremembering. Sometimes, as exemplified in cases of fear generalization- driven mnemonic injustice, individuals are harmed instead by non-declarative memory effects, and it is these memory effects that are implicated in injustice. Second, the argument in this paper suggests that there is a large variety of people who are vulnerable to harm due to how other people’s memory systems operate. The concept of mnemonic injustice has previously been used to capture how people, their actions and their personal characteristics can be misremembered because there are spe- cific stereotypes relating to their social identity (Puddifoot forthcoming). However, we have seen that people can be harmed, we argue unjustly, by other people’s personal memory mechanisms without the harm being due directly to stereotypes relating to their social identity, or due to their social identity at all. https://doi.org/10.1017/epi.2023.60 Published online by Cambridge University Press 9. Broadening the search for mnemonic injustice the primary person suffering generalized fear) can experience wide-ranging epistemic costs due to significant limita- tions being placed on their epistemic horizons. They may avoid entering social settings, stop going to school or work or so forth. They may miss out on a wide range of knowl- edge that they could have gained in these settings. The epistemic costs can range across many settings other than that in which they inflict harm on others. What this suggests is that mnemonic injustice can be a disjunct phenomenon: the epistemic harms to the person whose memory mechanisms are implicated can occur separately from the harms that they inflict on others. Finally, we have spoken in this paper about the memory mechanisms responsible for fear generalization being implicated in injustice, but we have also emphasized that where people experience fear due to the wrongdoing of other individuals or institutions those external agents can be the source of the wrongdoing. This suggests that we ought to be alert to the ways that one external agent can shape the workings of human mem- ory of another agent in ways that may produce injustice towards a third agent or sets of agents. Our discussion in this paper has therefore provided multiple reasons for broadening the search for mnemonic injustices and adopting an expanded conception of mnemonic injustice. By adopting an expanded conception of mnemonic injustice, it is possible to retain the crucial point that the memory mechanisms of individuals can bring epistemic harms to the rememberer and epistemic, affective and practical harms to others, in ways Episteme 23 Episteme Episteme that appear unjust (Puddifoot forthcoming). However, it is also possible to recognize that the harms are not always due to stereotyping and misremembering, nor are mem- bers of stereotyped and marginalized groups the only ones who face high risk of harm. In addition to this, it is possible to recognize that the epistemic harms suffered by those whose memories are implicated in mnemonic injustice can be long-lasting, and extend significantly beyond the time and place where their memories are implicated in harm- ing or wronging others. Finally, it is possible to recognize the role that external agents can have on causing mnemonic injustice. 10. Conclusions This paper contributes to the project of understanding how biological memory mechan- isms are implicated in injustice. It argues that memory mechanisms that lead to a pathological generalization of fear after trauma can be implicated in wrongdoing towards people who are unduly the objects of fear, and intimates of those who experi- ence the traumatic event that leads them to feel fear that generalizes. We have outlined some epistemic costs associated with fear generalization for the person who experiences fear that generalizes, and shown how these epistemic costs can be accompanied by epi- stemic, affective and practical harms to others. We have argued that these harms should be classified as wrongs when people face disparate levels of risk, sometimes but not always tracking aspects of their social identity, but always due to their situational vul- nerability, and where the harms are the consequence of independently wrongful actions or decisions. Conceiving of fear generalization as a mechanism through which injustice can occur has led us to revisit what it is for individuals’ memories to be implicated in injustice, and to suggest that the concept of mnemonic injustice should have an expanded application. The discussion has highlighted how mnemonic injustice can take many forms. It might not involve stereotyping or ill-treatment based on perceived social identity, although it might. It might not involve people being harmed by having their actions misremembered, although this can happen. It might not involve the person who is remembering suffering costs at the same time as others are harmed, although this is a possibility. This paper has provided a foundation for future work exploring these various ways that memories can bring injustices.9 https://doi.org/10.1017/epi.2023.60 Published online by Cambridge University Press References American Psychiatric Association. (2013). Diagnostic and Statistical Manual of Mental Disorders, 5th edi- tion. https://doi.org/10.1176/appi.books.9780890425596 merican Psychiatric Association. (2013). Diagnostic and Statistical Manual of Mental Disorders, 5th e tion. https://doi.org/10.1176/appi.books.9780890425596 ( ) p J p gy ( ) Archer A. and Mills G. (2019). ‘Anger, Affective Injustice, and Emotion Regulation.’ Philosophical Topics 47(2), 75–94. Asok A., Kandel E.R. and Rayman J.B. (2019). ‘The Neurobiology of Fear Generalization.’ Frontiers in Behavioral Neuroscience 12, 329. 9We would like to thank Santiago Echeverri and Miguel Angel Sebastián for kindly inviting us to present this work at the online seminar of the Red Iberoamericana de Filosofía de la Mente (Universidad Nacional Autónoma de México – UNAM, 04/2022), the audience of the panel ‘In Dialogue with Trauma’ during the Week of Virtual Events organized by the Memory Studies Association (MSA, 07/2022), and the organizers, Sarah Robins and Felipe De Brigard, and participants at the Pre-Conference Workshop on Memory, 49th Annual Meeting of the Society for Philosophy and Psychology (SPP). Marina Trakas’ work on this project was partially supported by the Agencia Nacional de Promoción de la Investigación, el Desarrollo Tecnológico y la Innovación (PICT 2020-SERIE A-03444). https://doi.org/10.1017/epi.2023.60 Published online by Cambridge University Press Marina Trakas and Katherine Puddifoot 24 Beiner G. (2018). Forgetful Remembrance: Social Forgetting and Vernacular Historiography of a Rebellion in Ulster. Oxford: Oxford University Press. Beiner G. (2018). Forgetful Remembrance: Social Forgetting and Vernacular Historiography of a Rebellion in Ulster. Oxford: Oxford University Press. ner G. (2018). Forgetful Remembrance: Social Forgetting and Vernacular Historiography of a Rebellion i Beiner G. (2018). Forgetful Remembrance: Social Forgetting and Vernacular Historiography of a Rebelli Ulster Oxford: Oxford University Press g f g g g p y f Ulster. Oxford: Oxford University Press. Bennett M., Vervoort E., Boddez Y., Hermans D. and Baeyens F. (2015). ‘Perceptual and Conceptual Similarities Facilitate the Generalization of Instructed Fear.’ Journal of Behavior Therapy and Experimental Psychiatry 48, 149–55. Blustein J. (2008). The Moral Demands of Memory. New York: Cambridge University Press. Butler J. (2004). Precarious Life: The Powers of Mourning and Violence. London: Verso Books Butler J. (2016). Frames of War: When is Life Grievable?. London: Verso Books. Callender T. and Dartnall L. (2011, January). Mental Health Responses for Victims of Sexual Violence and Rape in Resource-Poor Settings. Sexual Violence Research Initiative. https://www.svri.org/sites/default/ files/attachments/2016-04-13/MentalHealthResponse.pdf Christiansen D., Bak R. and Elklit A. (2012). References ‘Secondary Victims of Rape.’ Violence and Victims 27(2), 246–62. Christie H., Hamilton-Giachritsis C., McGuire R., Bisson J., Roberts N., Underwood J. and Halligan S. (2023). ‘Exploring the Perceived Impact of Parental PTSD on Parents and Parenting Behaviours – A Qualitative Study.’ Journal of Child and Family Studies 32, 3378–3388. y f y Connerton P. (2009). How Modernity Forgets. Cambridge: Cambridge University Press. Dekel R., Goldblatt H., Keidar M., Solomon Z. and Polliack M. (2005). ‘Being a Wife of a Veteran with Posttraumatic Stress Disorder.’ Family Relations 54(1), 24–36. Dijksterhuis A.P. and Van Knippenberg A.D. (1995). ‘Memory for Stereotype-Consistent and Stereotype-Inconsistent Information as a Function of Processing Pace.’ European Journal of Social Psychology 25(6), 689–93. Duffy J., Wareham S. and Walsh M. (2004). ‘Psychological Consequences for High School Students of Having Been Sexually Harassed.’ Sex Roles 50(11), 811–21. Dunsmoor J.E. and Murphy G.L. (2015). ‘Categories, Concepts, and Conditioning: How Humans Generalize Fear.’ Trends in Cognitive Sciences 19(2), 73–77. Dunsmoor J.E. and Paz R. (2015). ‘Fear Generalization and Anxiety: Behavioral and Neural Mechanisms.’ Biological Psychiatry 78(5), 336–43. nsmoor J.E., Mitroff S.R. and LaBar K.S. (2009). ‘Generalization of Conditioned Fear along Dimension of Increasing Fear Intensity.’ Learning & Memory 16(7), 460–69. Dymond S., Dunsmoor J.E., Vervliet B., Roche B. and Hermans D. (2015). ‘Fear Generalization in Humans: Systematic Review and Implications for Anxiety Disorder Research.’ Behavior Therapy 46 (5), 561–82. Dymond S., Bennett M., Boyle S., Roche B. and Schlund M. (2018). ‘Related to Anxiety: Arbitrarily Applicable Relational Responding and Experimental Psychopathology Research on Fear and Avoidance.’ Perspectives on Behavior Science 41(1), 189–213. p Easteal P. (1994). Voices of the Survivors. North Melbourne, Vic: Spinifex Press. Ehlers A., Hackmann A. and Michael T. (2004). ‘Intrusive Re-Experiencing in Post-Traumatic Stress Disorder: Phenomenology, Theory, and Therapy.’ Memory 12(4), 403–15. Emm D. and McKenry P.C. (1988). ‘Coping with Victimization: The Impact of Rape on Female Survivors, Male Significant Others, and Parents.’ Contemporary Family Therapy 10(4), 272–79. ima S. (2020). ‘I Know What Happened to Me: The Epistemic Harms of Microaggression.’ In L Freeman and J.W. Schroer (eds), Microaggressions and Philosophy, pp. 163–83. New York: Routledge Fatima S. (2020). ‘I Know What Happened to Me: The Epistemic Harms of Microaggression.’ In L. Freeman and J.W. Schroer (eds), Microaggressions and Philosophy, pp. 163–83. New York: Routledge. References Kappler K.E. (2012). Living with Paradoxes: Victims of Sexual Violence and their Conduct in Everyday Life. Wiesbaden: VS Verlang. Kidd I.J., Medina J. and Pohlhaus G. (eds) (2017). The Routledge Handbook of Epistemic Injustice. Abingdon, Oxon: Routledge. ittay E.F. (2020). Love’s Labor: Essays on Women, Equality and Dependency. New York: Routledge. Krikorian R. and Layton B.S. (1998). ‘Implicit Memory in Posttraumatic Stress Disorder with Amnesia for the Traumatic Event.’ The Journal of Neuropsychiatry and Clinical Neurosciences 10(3), 359–62. eDoux J.E. (1993). ‘Emotional Memory Systems in the Brain.’ Behavioural Brain Research 58(1–2), 69– LeDoux J.E. (1996). The Emotional Brain. New York: Phoenix. eDoux J.E. (1996). The Emotional Brain. New York: Phoenix. M. (2014). ‘Parental Values and Children’s Vulnerability.’ In C. Mackenzie, W. Rogers and S. Dodds ds), Vulnerability: New Essays in Ethics and Feminist Philosophy, pp. 242–65. New York: OUP. MacIntyre A.C. (1999). Dependent Rational Animals: Why Human Beings Need the Virtues (Vol. 2 London: Duckworth. Mackenzie C. (2014). ‘The Importance of Relational Autonomy and Capabilities for an Ethics of Vulnerability.’ In C. Mackenzie, W. Rogers and S. Dodds (eds), Vulnerability: New Essays in Ethics and Feminist Philosophy, pp. 33–59. New York: OUP. Mackenzie C., Rogers W. and Dodds S. (2014). ‘Introduction: What is Vulnerability and Why Does it Matter for Moral Theory?’ In C. Mackenzie, W. Rogers and S. Dodds (eds), Vulnerability: New Essays in Ethics and Feminist Philosophy, pp. 1–32. New York: OUP. Mengo C. and Black B.M. (2016). ‘Violence Victimization on a College Campus: Impact on GPA and School Dropout.’ Journal of College Student Retention: Research, Theory & Practice 18(2), 234–48. Mills C. (2007). ‘White Ignorance.’ In S. Sullivan and N. Tuana (eds), Race and Epistemologies of Ignorance, Vol. 247, pp. 26–31. New York: Suny Press. Milner B., Squire L.R. and Kandel E.R. (1998). ‘Cognitive Neuroscience and the Study of Memory.’ Neuron 20(3), 445–68. Mullin A. (2014). ‘Children, Vulnerability and Emotional Harm.’ In C. Mackenzie, W. Rogers and S. Dodds (eds), Vulnerability: New Essays in Ethics and Feminist Philosophy, pp. 266–87. New York: OUP. Nicolas S. (1996). ‘Experiments on Implicit Memory in a Korsakoff Patient by Claparède (1907).’ Cognitive Neuropsychology 13(8), 1193–99. Phelps E.A. (2004). ‘Human Emotion and Memory: Interactions of the Amygdala and Hippocampal Complex.’ Current Opinion in Neurobiology 14(2), 198–202. Pittig A., Treanor M., LeBeau R.T. and Craske M.G. (2018). References Fineman M A (2010) ‘The Vulnerable Subject: Anchoring Equality in the Human Condition ’ In M A ( ) pp p gg Freeman and J.W. Schroer (eds), Microaggressions and Philosophy, pp. 163–83. New York: Routledge. Fineman M.A. (2010). ‘The Vulnerable Subject: Anchoring Equality in the Human Condition.’ In M.A. ( d ) T d h d f Ab d O l d C d h eman M.A. (2010). ‘The Vulnerable Subject: Anchoring Equality in the Human Condition.’ In M.A Fineman (ed.), Transcending the Boundaries of Law, pp. 177–91. Abingdon, Oxon: Routledge-Cavendish Fischer J.M. and Tognazzini N.A. (2009). ‘The Truth about Tracing.’ Noûs 43(3), 531–56. Foa E.B. and Kozak M.J. (1986). ‘Emotional Processing of Fear: Exposure to Corrective Information.’ Psychological Bulletin 99(1), 20–35. Fricker M. (2007). Epistemic Injustice: Power and the Ethics of Knowing. Oxford: OUP. Fricker M. (2017). ‘Evolving Concepts of Epistemic Injustice.’ In I.J. Kidd, J. Medina and G. Pohlhaus Jr. (eds), The Routledge Handbook of Epistemic Injustice, pp. 53–60. Abingdon, Oxon: Routledge. Friedlaender C. (2018). ‘On Microaggressions: Cumulative Harm and Individual Responsibility.’ Hypatia 33(1), 5–21. Fyock J. and Stangor C. (1994). ‘The Role of Memory Biases in Stereotype Maintenance.’ British Journal of Social Psychology 33(3), 331–43. https://doi.org/10.1017/epi.2023.60 Published online by Cambridge University Press 25 Episteme Episteme Goodin R.E. (1985). Protecting the Vulnerable: A Re-Analysis of Our Social Responsibilities. Chicago: University of Chicago Press. Gregory A., Feder G., Taket A. and Williamson E. (2017a). ‘Qualitative Study to Explore the Health and Well-Being Impacts on Adults Providing Informal Support to Female Domestic Violence Survivors.’ BMJ Open 7(3), e014511. Gregory A.C., Williamson E. and Feder G. (2017b). ‘The Impact on Informal Supporters of Domestic Violence Survivors: A Systematic Literature Review.’ Trauma, Violence, & Abuse 18(5), 562–80. Hastie R. (1981). ‘Schematic Principles in Human Memory.’ Social Cognition: The Ontario Symposium 1, 39–88. Hastie R. and Kumar P.A. (1979). ‘Person Memory: Personality Traits as Organizing Principles in Memory for Behaviors.’ Journal of Personality and Social Psychology 37(1), 25–38. Heller E. (2016, August 30). Sexual Violence Prevention: What Policymakers Should Know. National Conference of State Legislatures. https://www.ncsl.org/blog/2016/08/30/sexual-violence-prevention- what-policymakers-should-know.aspx. y Herman J. (1992). Trauma and Recovery: The Aftermath of Violence – From Domestic Abuse to Political Terror. New York: Basic Books. Hill C. and Silva E. (2005). Drawing the Line: Sexual Harassment on Campus. Washington: American Association of University Women Educational Foundation. https://files.eric.ed.gov/fulltext/ED489850.pdf Jacoby R. (1975). Social Amnesia: A Critique of Contemporary Psychology. Boston: Baecon. References ‘The Role of Associative Fear and Avoidance Learning in Anxiety Disorders: Gaps and Directions for Future Research.’ Neuroscience & Biobehavioral Reviews 88, 117–40. Puddifoot K. (2021). How Stereotypes Deceive Us. Oxford: OUP. https://doi.org/10.1017/epi.2023.60 Published online by Cambridge University Press Marina Trakas and Katherine Puddifoot 26 Puddifoot K. (forthcoming). ‘Mnemonic Injustice.’ In S. Wright and S. Goldberg (eds), Memory and Testimony: New Essays in Epistemology. OUP. ddifoot K. and Trakas M. (2023). ‘Epistemic Agency and the Generalisation of Fear.’ Synthese 202(1), Rachman S. (1977). ‘The Conditioning Theory of Fear-Acquisition: A Critical Examination.’ Behaviour Research and Therapy 15(5), 375–87. Remer R. and Elliott J.E. (1988). ‘Characteristics of Secondary Victims of Sexual Assault.’ International Journal of Family Psychiatry 9(4), 373–87. Remer R. and Ferguson R.A. (1998). ‘Treating Traumatized Partners: Producing Secondary Survivors of PTSD.’ In C.R. Figley (ed.), Burnout in Families: The Systemic Costs of Caring, pp. 139–70. Boca Raton, FL: CRC Press/Routledge/Taylor & Francis Group. L: CRC Press/Routledge/Taylor & Francis Group. Rini R. (2018). ‘How to Take Offense: Responding to Microaggression.’ Journal of the American Philosophical Association 4(3), 332–51. Roediger III H.L., Zaromb F.M. and Lin W. (2017). ‘A Typology of Memory Terms.’ In J.H. Byrne (Series ed.), Learning and Memory: A Comprehensive Reference: Vol. 1. Learning Theory and Behavior, pp. 7–19. Oxford: OUP. Rojahn K. and Pettigrew T.F. (1992). ‘Memory for Schema-Relevant Information: A Meta-Ana Resolution.’ British Journal of Social Psychology 31(2), 81–109. Rudy-Hiller F. (2022). ‘The Epistemic Condition for Moral Responsibility.’ In E.N. Zalta and U. Nodelman (eds), The Stanford Encyclopedia of Philosophy (Winter 2022 Edition). https://plato.stanford.edu/ archives/win2022/entries/moral-responsibility-epistemic/ Russin S.E. and Stein C.H. (2021). ‘The Aftermath of Trauma and Abuse and the Impact on Family: A Narrative Literature Review.’ Trauma, Violence, & Abuse 23(4), 1288–1301. Sartorio C. (2016). ‘Ignorance, Alternative Possibilities, and the Epistemic Conditions for Responsibility.’ In R. Peels (ed.), Perspectives on Ignorance from Moral and Social Philosophy, pp. 15–29. New York: Routledge. Schwerdtfeger K.L., Osby-Williams J., Hoheisel C.B., Nue B., Nelson Goff B., Reisbig A.M., Archuieta K., Blalock Henry S., Bole A., Hanes E., Sanders-Hahs E., Scheer T. and Smith D.B. (2008). ‘Individual Symptoms and Coping Resources Reported by Trauma Survivors and their Partners: A Qualitative Research Study with Clinical Couples.’ Journal of Couple & Relationship Therapy 7(3), 187–209. Sellman D. (2005). ‘Towards an Understanding of Nursing as a Response to Human Vulnerability.’ Nursing Philosophy 6(1), 2–10. Shepard R.N. (1987). Cite this article: Trakas M, Puddifoot K (2024). Fear Generalization and Mnemonic Injustice. Episteme 1–27. https://doi.org/10.1017/epi.2023.60 References ‘Toward a Universal Law of Generalization for Psychological Science.’ Science 237, 1317–23. South Dakota Department of Public Safety (n.d.). Crime Victims’ Compensation Program. https://dps.sd. gov/victims-services/crime-victims-compensation Squire L.R. (1992). ‘Memory and the Hippocampus: A Synthesis from findings with Rats, Monkeys, and Humans.’ Psychological Review 99, 195–231. Squire L.R. and Zola-Morgan S. (1988). ‘Memory: Brain Systems and Behavior.’ Trends in Neurosciences 11(4), 170–75. Srinivasan A. (2018). ‘The Aptness of Anger.’ Journal of Political Philosophy 26(2), 123–44. Srull T.K. (1981). ‘Person Memory: Some Tests of Associative Storage and Retrieval Models.’ Journal of Experimental Psychology: Human Learning and Memory 7(6), 440–63. Stangor C. and McMillan D. (1992). ‘Memory for Expectancy-Congruent and Expectancy-Incongruent Information: A Review of the Social and Social Developmental Literatures.’ Psychological Bulletin 111(1), 42–61. State of Connecticut Judicial Branch (n.d.). Victim Compensation Program. https://www.jud.ct.gov/ crimevictim/compensation.htm Stone C.B. and Hirst W. (2014). ‘(Induced) Forgetting to Form a Collective Memory.’ Memory Studies 7(3), 314–27. Tanesini A. (2018). ‘Collective Amnesia and Epistemic Injustice.’ In J.A. Carter, A. Clark, J. Kallestrup, S.O. Palermos and D. Pritchard (eds), Socially Extended Epistemology, pp. 195–219. Oxford: OUP. Tanesini A. (2018). ‘Collective Amnesia and Epistemic Injustice.’ In J.A. Carter, A. Clark, J. Kallestrup, S.O. l d h d d ll d d l f d Tobias B.A., Kihlstrom J.F. and Schacter D.L. (1992). ‘Emotion and Implicit Memory.’ In S.A Christianson (ed.), Handbook of Emotion and Memory, pp. 67–92. New Jersey: Erlbaum. Trakas M. (2021). ‘No Trace Beyond their Name? Affective Memories, a Forgotten Concept.’ L’Année psychologique/Topics in Cognitive Psychology 121(2), 129–73. https://doi.org/10.1017/epi.2023.60 Published online by Cambridge University Press Episteme 27 Tulving E. (1972). ‘Episodic and Semantic Memory.’ Organization of Memory 1, 381–403. Tulving E. (1985). ‘Memory and Consciousness.’ Canadian Psychology/Psychologie Canadienne 26(1), 1–12. van Wijk E. and Harrison T.C. (2014). ‘Relationship Difficulties Postrape: Being a Male Intimate Partner of a Female Rape Victim in Cape Town, South Africa.’ Health Care for Women International 35(7–9), 1081–105. Vargas M. (2005). ‘The Trouble with Tracing.’ Midwest Studies in Philosophy 29, 269–91. Vervliet B., Kindt M., Vansteenwegen D. and Hermans D. (2010). ‘Fear Generalization in Humans: Impact of Prior non-Fearful Experiences.’ Behaviour Research and Therapy 48(11), 1078–84. Whitney S. (2018). ‘Affective intentionality and affective Injustice: Merleau‐Ponty and Fanon on the Body Schema as a Theory of Affect.’ The Southern Journal of Philosophy 56(4), 488–515. Wang J., Leu J. and Shoda Y. (2011). https://doi.org/10.1017/epi.2023.60 Published online by Cambridge University Press References ‘When the Seemingly Innocuous “Stings”: Racial Microaggressions and their Emotional Consequences.’ Personality and Social Psychology Bulletin 37(12), 1666–78. Watson J.B. and Rayner R. (1920). ‘Conditioned Emotional Reactions.’ Journal of Experimental Psychol 3, 1–14. Zimmerman M.J. (1997). ‘Moral Responsibility and Ignorance.’ Ethics 107(3), 410–26. Marina Trakas is an assistant researcher at the Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET) in Argentina. Her primary research focus is on memory, but she has also begun exploring dreams. Currently, she is actively involved in interdisciplinary projects related to both topics. Katherine Puddifoot is an associate professor in philosophy at Durham University in the United Kingdom. Her primary research interests are in stereotyping, memory, and related injustices. She is the author of the 2021 OUP monograph How Stereotypes Deceive Us. Cite this article: Trakas M, Puddifoot K (2024). Fear Generalization and Mnemonic Injustice. Episteme 1–27. https://doi.org/10.1017/epi.2023.60 https://doi.org/10.1017/epi.2023.60 Published online by Cambridge University Press
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Expression of pluripotency markers in the bovine uterus with adenomyosis
Reproductive biology and endocrinology
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© 2015 Łupicka et al. Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. Łupicka et al. Reproductive Biology and Endocrinology (2015) 13:110 DOI 10.1186/s12958-015-0106-0 Łupicka et al. Reproductive Biology and Endocrinology (2015) 13:110 DOI 10.1186/s12958-015-0106-0 Open Access Open Access * Correspondence: a.korzekwa@pan.olsztyn.pl Department of Reproductive Immunology and Pathology, Institute of Animal Reproduction and Food Research, Polish Academy of Sciences, 10-748 Olsztyn, Poland Expression of pluripotency markers in the bovine uterus with adenomyosis Martyna Łupicka, Barbara Socha, Agata Szczepańska and Anna Korzekwa* Abstract Background: Adenomyosis is a proliferative uterine dysfunction with unknown aetiology. One possible mechanism of its development involves disturbances in stem cell differentiation in uterine tissue. Previously, we identified pluripotent/ multipotent cells in the bovine uterus, therefore our present study focused on determining expression of pluripotency markers, NANOG, OCT4 and SOX2, in bovine adenomyotic tissues and cells. Findings: Immunolocalisation revealed protein expression of NANOG, OCT4 and SOX2 in both normal and adenomyotic uteri. mRNA expression for NANOG and OCT4 was increased in tissues obtained from uteri with adenomyosis compared to controls, but at the protein level there were no significant differences. mRNA expression for all three pluripotency markers was higher in myometrial cells isolated from uteri with adenomyotic lesions than in those isolated from normal uteri. The protein level of NANOG and SOX2 was decreased in stromal cells from adenomyotic tissues, whereas the level of OCT4 and SOX2 was increased in myometrial cells obtained from dysfunctional uteri. Conclusions: The results indicate significant changes in expression of pluripotency markers in adenomyotic compared to normal uteri, which suggest the involvement of uterine stem cells in adenomyosis. Keywords: Uterus, Pluripotent cells, Adenomyosis, Cow Background hypothesis, glandular nests may arise de novo within the myometrial layer from undifferentiated stem cells under specific conditions, in particular under the influence of oestradiol (E2) [7, 8]. Whatever the mechanism under- lying formation of glandular foci in the myometrium, hormonal and immunological abnormalities certainly play a role during adenomyosis development [9, 10]. Adenomyosis is uterine dysfunction characterised by the presence of endometrial glands with stromal elements in the myometrium [1]. This pathological condition is well recognized in women, and although it is less known in domestic animals including cows [2–4], nevertheless it may result in reduced reproductive performance [4]. Although adenomyosis frequently occurs in multiparous women [5] and cows older than 5 years [4], the aetiology of this disorder is still unclear [2]. Several hypotheses have been proposed to explain adenomyosis develop- ment. One possible mechanism involves the breakdown of endometrial and myometrial barrier preceded by trauma such as abortion or gynaecological interventions, and followed by reactive hyperplasia of the endometrium and its proliferation within the myometrium [1, 6]. Another proposed mechanism of adenomyosis develop- ment involves metaplasia of uterine pluripotent/multipo- tent cells under hormonal stimuli. According to this Stem cells reside in many adult organs and tissues that exhibit high regenerative potential [11]. The cells may be identified by several markers, including NANOG, OCT4 and SOX2. These proteins are transcription factors present in embryonic stem cells [12] and, as recent stud- ies have shown, in mesenchymal stem cells settled also in reproductive organs [13, 14]. OCT4 and SOX2 are progenitor-specific proteins: octamer-binding transcrip- tion factor 4 (OCT4) and sex determine region Ybox 2 (SOX2). NANOG is a homeodomain-containing tran- scription factor and its expression is regulated by OCT4/SOX2 heterodimer, which binds to the octamer/ sox elements at NANOG gene promoter [15]. In the present study we selected NANOG, OCT4 and SOX2 as the markers of undifferentiated state and pluripotency/ multipotency of cells that reside in uterus. Page 2 of 13 Łupicka et al. Reproductive Biology and Endocrinology (2015) 13:110 Changes that occur in the endometrium during re- productive cycles, in particular endometrial gland morphogenesis, require a remarkable proliferation capacity of the tissue; thus, pluripotent/multipotent cells play an important role in endometrial function- ing and renewal [11, 16, 17]. These proliferative pro- cesses in the uterus remain under the strict control of ovarian steroids, therefore these hormones also in- fluence uterine stem cell properties [11, 17]. Background observation of the ovaries and uterus [21] and confirmed by determination of P4 levels in peripheral blood plasma using radioimmunoassay (RIA). Just before slaughter, each animal was examined by a veterinarian via per rectum ultrasound-guided examination and information about the age of each cow was recorded. Peripheral blood samples were collected from the jugular vein. The reasons for culling animals from the herd were eco- nomic considerations and herd renewal. For further experiments, after histopathologic examination, material quality evaluation and hormone determination, 18 cows were eventually selected (9 for each experimental group). During adenomyosis in cows, protein expression of the E2 receptor α (ERα) is increased [4], and also blood and endometrial E2 concentrations are elevated, which indicate hormonal abnormalities during this condition [4]. Parallel with increased E2 stimulation, excessive proliferation of endometrial cells occurs, which is characterized by expres- sion of the proliferation marker KI-67-antigen in adeno- myotic foci [18]. In our recent studies, we identified pluripotent/multipotent cells in the bovine uterus [19]. We also demonstrated expression of the pluripotency markers NANOG, OCT4 and SOX2 in uterine tissue and cultured uterine primary epithelial, stromal and myome- trial cells, and in addition we confirmed pluripotent/mul- tipotent properties of these cells by multilineage differentiation [19]. These results suggest that stem cells may be involved in adenomyosis development in the bovine uterus. Therefore, we hypothesized that pluripo- tency markers NANOG, OCT4 and SOX2 are differen- tially expressed in uterine tissues and cells from control and adenomyotic cows. The study by Moreira et al. (2007) showed increased frequency of adenomyosis in cows in the mid luteal stage of the oestrous cycle [20], so for this study we used uteri from cows at days 8–10 of the oestrous cycle. Tissue fragments (cross-sections of the uterine wall, i.e., endometrium and myometrium) were obtained from the middle segment of the uterine horn ipsilateral to the corpus luteum and were divided into three pieces: the first one was fixed in 4 % paraformaldehyde (PFA) in 0.1 M PBS (pH 7.4) for histo- and immunohistochemical staining, the second was frozen and stored at −86 °C for further mRNA and protein expression determination in whole uterine tissue, and the third piece was used for immediate isolation and culture of uterine cells. Uterine cell isolation and in vitro culture Endometrial stromal cells were isolated by enzymatic dissociation as previously described [22]. After endomet- rial cell isolation, the myometrial layer of the uterus was accessed and dissected with scissors. About 4 cm long fragments of muscle tissue were chopped up with scis- sors into a homogeneous material. Approximately 5 g of the chopped tissue was digested in 50 ml of M199 medium (Sigma, M2520, St. Louis, MO, USA) contain- ing 0.1 % of bovine serum albumin (BSA; Sigma, A2058), 20 μg/ml of gentamicin (Sigma, G1271), 2 mg/ml of collagenase I (Sigma, C0130), 1 mg/ml of deoxyribo- nuclease (Sigma, D5025) and 2 mg/ml of dispase (Life Technologies, 17105–041, Paisley, UK). The enzyme solu- tion with myometrial tissue was held at 37.5 °C with stir- ring for 30 min. After digestion, the cell suspension was Histochemical staining and preliminary division of the material Uterine tissue was fixed in 4 % PFA and processed for a standard haematoxylin and eosin staining protocol. Stained cross-sections of the tissue were observed under a light microscope (Nikon FXA, Tokyo, Japan). Animals were classified as described previously [4]; briefly, if uterine glands were present only in the endometrium, and if the endometrial-myometrial border was clearly visible, cows were classified as normal/control (n = 9, Fig. 1a). Whereas, if the glands penetrated the myome- trial layer of the uterus, animals were classified as adenomyotic (n = 9, Fig. 1b–d; according to the classifi- cation of Katkiewicz et al. 2005 [18]). The aims of the study were: (1) comparison of NANOG, OCT4 and SOX2 mRNA expression, immu- nolocalisation and protein expression in control and adenomyotic uterine tissues; (2) determination of NANOG, OCT4 and SOX2 mRNA and protein expression in cultured primary uterine endometrial stromal and myometrial cells isolated from adeno- myotic cows. Immunohistochemistry h h Immunohistochemistry Immunohistochemistry (IHC) was used to localise nuclear transcription factors, NANOG, OCT4 and SOX2, in uterine tissues. Immunohistochemistry Immunohistochemistry (IHC) was used to localise nuclear transcription factors, NANOG, OCT4 and SOX2, in uterine tissues. The cells of each layer of the uterus were seeded sep- arately at a density of 1 x 106 living cells/ml in 1 ml and 2 ml culture medium per well in collagen-coated 24-well and 6-well plates, respectively (Biocoat; BD Bioscience, 4408, 4400, Bedford, MA, USA), and cultured at 37.5 °C in a humidified atmosphere of 5 % CO2, 95 % air. The medium was changed every 2 days until 70 % confluence was reached (approx. at 4th day of culture). Total mRNA, cell lysates and culture media were collected. Stromal cells maintained during culture fibroblast-like morphology (Fig. 2a), while myometrial cells exhibited fusiform appearance (Fig. 2b). Purity of the cell cultures was rated by 4 independent observations under the light microscope based on cells morphology [23], and was evaluated for approx. 90–95 % for each cell types. Cell culture homogeneity was also confirmed using real-time PCR for determination of mRNA expression of vimentin and desmin for stromal and myometrial cells, respect- ively [23, 24]. Vimentin was highly expressed in stromal cells and in contrary weakly expressed in myometrial cell cultures (Fig. 2c). Desmin was expressed mainly in myo- metrial cultures, while in stromal cultures the expression was on low level (Fig. 2d). For cells’ functionality Cross-sections of uterine horn samples were fixed in 4 % PFA in 0.1 M PBS (pH 7.4), and cryoprotected in 18 % sucrose. Immunostaining was carried out on con- secutive 7 μm cryostat sections. To block endogenous peroxidase, the sections were treated with hydrogen per- oxide in methanol and washed in 0.1 M PBS. The sec- tions were blocked with 10 % normal goat serum (Sigma, G9023) for 1 h at room temperature (approx. 23 °C; RT), incubated overnight at RT with a 1:100 dilu- tion of anti-NANOG (Abcam, 80892, Cambridge, UK), anti-OCT4 (Abcam, 19857) or anti-SOX2 (Sigma, S9072) antibodies, washed in PBS, incubated for 1 h with a 1:25,000 dilution of biotinylated anti-rabbit (Vectastain ABC Kit; Vector Laboratories, PK 4001, Burlingame, CA, USA) antibodies, then washed, incu- bated for 45 min with the ABD reagent in PBS, and washed again. Material collection All procedures were approved by the Local Animal Care and Use Committee, Olsztyn, Poland (agreement no. 83/ 2012/N). A total of 24 Holstein/Polish Black and White cows (75 %/ 25 %, respectively) 5–7 years old were used for post mortem collection of uteri (days 8–10 of the oestrous cycle). Uterine tissues were obtained at the Meat Processing Plant “Warmia” (Biskupiec, Poland) and transported on ice to the laboratory within 40 min. Day of the oestrous cycle was evaluated by macroscopic Łupicka et al. Reproductive Biology and Endocrinology (2015) 13:110 Page 3 of 13 Fig. 1 Representative pictures of haematoxylin and eosin stained bovine uterine cross-section slides. a – normal uterine tissue with regular, clearly visible border between endometrium and myometrium; b-d – adenomyotic tissue with visible uterine glands within the myometrial layer of the uterus. Arrows indicate glandular nests in myometrium. Scale bars: 100 μm Fig. 1 Representative pictures of haematoxylin and eosin stained bovine uterine cross-section slides. a – normal uterine tissue with regular, clearly visible border between endometrium and myometrium; b-d – adenomyotic tissue with visible uterine glands within the myometrial layer of the uterus. Arrows indicate glandular nests in myometrium. Scale bars: 100 μm confirmation prostaglandin (PG) E2 and PGF2α level was measured in culture medium by enzyme immunoassay (EIA; Fig. 3a, b). The levels of secreted PGs indicate maintained functionality of the uterine cells during cul- tures [25–27]. filtered through a mesh to remove undigested tissue frag- ments, then the cells were washed by centrifugation (10 min at 100 x g, at 4 °C). Cells were resuspended in cul- ture medium (DMEM; Sigma, D5796) supplemented with 10 % of fetal calf serum (FCS; Sigma, 12133C) and antibi- otics (gentamicin/amphotericin B; Life Technologies, 1153727). Immunohistochemistry h h sections were dehydrated and cover-slipped with DPX mounting medium (Park Scientific Ltd, D-11601, Northampton, UK). To determine the specificity of the immunohistochemical staining, two controls were performed: first, the primary antibody was omitted during the immunostaining procedure; second, the primary antibody was substituted with a nonspecific IgG. Observations and photographs were made with a light microscope (Nikon FXA). Total RNA isolation Immunohistochemistry h h Proteins were visualized by incubating the sections in 0.3 mg/mL 3,30-diaminobenzidine tet- rahydrochloride in 0.01 % hydrogen peroxide in Tris- buffered saline (pH 7.2) for 2–3 min. Finally, the Łupicka et al. Reproductive Biology and Endocrinology (2015) 13:110 Page 4 of 13 sections were dehydrated and cover-slipped with DPX mounting medium (Park Scientific Ltd, D-11601, Northampton, UK). To determine the specificity of the immunohistochemical staining, two controls were performed: first, the primary antibody was omitted Total RNA isolation Total RNA was extracted from uterine tissues (approx. 30 mg) and cultured cells using TRI-Reagent (Sigma, T9424) according to the manufacturer’s instructions. The content and purity of RNA was assessed on a 0 1 2 3 * vimentin/GAPDH mRNA expression (arbitrary units) stromal myometrial 0 2 4 6 8 * cells desmin/GAPDH mRNA expression (arbitrary units) C A B D Fig. 2 Evaluation of cell cultures homogeneity. a, b – representative pictures of stromal and myometrial cultured cells, respectively. Scale bars: 20 μm. Expression of vimentin in stromal and myometrial cells c; expression of desmin in stromal and myometrial cells d. Data were normalized against glyceraldehyde-3-phosphate dehydrogenase (GAPDH). Bars represent the mean ± SEM. Asterisks indicate statistical difference between uterine stromal and myometrial cells (P < 0.05), as determined by Student’s t-test A B B B 0 1 2 3 * vimentin/GAPDH mRNA expression (arbitrary units) C C stromal myometrial 0 2 4 6 8 * cells desmin/GAPDH mRNA expression (arbitrary units) D neity. a, b – representative pictures of stromal and myometrial cultured cells, respectively. Scale bars: 20 μm. D Fig. 2 Evaluation of cell cultures homogeneity. a, b – representative pictures of stromal and myometrial cultured cells, respectively. Scale bars: 20 μm. Expression of vimentin in stromal and myometrial cells c; expression of desmin in stromal and myometrial cells d. Data were normalized against glyceraldehyde-3-phosphate dehydrogenase (GAPDH). Bars represent the mean ± SEM. Asterisks indicate statistical difference between uterine stromal and myometrial cells (P < 0.05), as determined by Student’s t-test sections were dehydrated and cover-slipped with DPX mounting medium (Park Scientific Ltd, D-11601, Northampton, UK). To determine the specificity of the immunohistochemical staining, two controls were performed: first, the primary antibody was omitted during the immunostaining procedure; second, the primary antibody was substituted with a nonspecific IgG. Observations and photographs were made with a light microscope (Nikon FXA). Total RNA isolation Total RNA was extracted from uterine tissues (approx. 30 mg) and cultured cells using TRI-Reagent (Sigma, T9424) according to the manufacturer’s instructions. The content and purity of RNA was assessed on a NanoDrop 1000 (Thermo Fisher Scientific, ND-1000, Wilmington, DE, USA). 260/280 absorbance ratio for all samples was approx. 2.0, and 260/230 absorbance ratio ranged between 1.8–2.2. One microgram of each Łupicka et al. Reproductive Biology and Endocrinology (2015) 13:110 Page 5 of 13 0 1000 2000 3000 4000 PGE2 (pg/ml) stromal myometrial 0 500 1000 1500 2000 2500 cells PGF2 (pg/ml) A B Fig. 3 Prostaglandins secretion by stromal and myometrial cultured cells. Secretion of prostaglandin E2 by cultured uterine cells a; secretion of prostaglandin F2α by cultured uterine cells b. Bars represent the mean ± SEM. There were no statistically significant differences in PGs secretion between stromal and myometrial cells (P > 0.05), as determined by Student’s t-test 0 1000 2000 3000 4000 PGE2 (pg/ml) A in Table 1. Standard curves consisting of serial dilutions of the appropriate cDNA were plotted for efficiency evaluation. Amplification was preceded by an initial en- zyme activation step (2 min, 95 °C). The PCR steps were as follows: 40 cycles of denaturation (5 s, 95 °C), then annealing and extending (20 s, 60 °C). After amplifica- tion, melting curves were acquired by stepwise increases at a temperature of 50–95 °C to ensure that a single product was amplified and no primer-dimer structures were formed. Control reactions in the absence of the template or primers were performed to confirm that products were free from primer-dimers and genomic DNA contamination, respectively. Dissociation curves analysis was carried out after each real-time experiment to confirm the presence of only one amplification prod- uct. Data were normalized using the ΔΔCt method. Samples were amplified in duplicates. Data are shown as the average fold increase, with S.E.M., and are expressed relative to the housekeeping gene GAPDH. stromal myometrial 0 500 1000 1500 2000 2500 cells PGF2 (pg/ml) B Fig. 3 Prostaglandins secretion by stromal and myometrial cultured cells. Secretion of prostaglandin E2 by cultured uterine cells a; secretion of prostaglandin F2α by cultured uterine cells b. Bars represent the mean ± SEM. There were no statistically significant differences in PGs secretion between stromal and myometrial cells (P > 0.05), as determined by Student’s t-test stromal myometrial 0 500 1000 1500 2000 2500 cells PGF2 (pg/ml) B B Real-time PCR quantification q mRNA expression for NANOG, OCT4 and SOX2 in the tissues and cells was determined by quantitative real- time PCR. The experiments were performed using the Applied Biosystems 7900 (Applied Biosystems, Foster City, CA, USA) with SensiFAST SYBR Hi-ROX Kit (Bio- line Reagents, BIO-92002, London, UK) according to the manufacturer’s instructions. The real-time PCR reaction mix (20 μl) contained 19 μl of SensiFAST SYBR Hi-ROX Master Mix, 0.5 μM of sense and antisense primers, and 1 μl of reverse-transcribed cDNA (50 ng). Primer se- quences used for determination of vimentin, desmin, NANOG, OCT4, SOX2 and glyceraldehyde 3-phosphate dehydrogenase (GAPDH) mRNA expression are detailed Western blotting Protein expression for NANOG, OCT4 and SOX2 in the tissues and cells was determined by Western blotting. Proteins from homogenised tissues and in vitro cultured cells were released by incubation with lysis buffer containing 50 mM Tris–HCl (pH 8.0), 150 mM NaCl, 5 mM EDTA, 0.1 % SDS, 1 % TritonX-100, 0.5 % sodium deoxycholate and protease inhibitors (Sigma, P8340). The lysates were stored at −86 °C until further analysis. Protein concentra- tions were measured by the Bradford’s method. Fig. 3 Prostaglandins secretion by stromal and myometrial cultured cells. Secretion of prostaglandin E2 by cultured uterine cells a; secretion of prostaglandin F2α by cultured uterine cells b. Bars represent the mean ± SEM. There were no statistically significant differences in PGs secretion between stromal and myometrial cells (P > 0.05), as determined by Student’s t-test Western blot analysis was performed as previously described [28]. Equal amounts of protein were dis- solved in SDS gel-loading buffer, heated to 95 °C for 4 min and separated in 10 % SDS-PAGE. Separated proteins were electroblotted onto 0.2 μm nitrocellu- lose membranes in transfer buffer. After blocking in 5 % non-fat dry milk in TBS-T buffer for 1.5 h at RT, the membranes were incubated overnight with a 1:250 dilution of anti-NANOG (Novus Biologicals Ltd, NBP2-24941, Cambridge, UK), a 1:400 dilution of anti-OCT4 (Novus Biologicals Ltd, NB100-2379) or a 1:500 dilution of anti- SOX2 (Sigma, S9072) antibodies; GAPDH (Sigma, G8795; monoclonal anti-glyceraldehyde-3-phosphate dehydrogen- ase antibody produced in mouse) expression was used as a reference. Proteins were detected by incubating the mem- branes with a 1:20,000 dilution of secondary polyclonal anti-rabbit or anti-mouse alkaline phosphatase-conjugated antibodies (Sigma, A 3687, A 3562) for 1.5 h at RT. Western blots were quantitated using the Kodak 1 D program (Eastman Kodak, Rochester, NY, USA). sample of total RNA was reverse-transcribed to cDNA with the QuantiTect Reverse Transcription kit (Life Technologies, 205313), as described in the supplier’s protocol. The cDNA obtained was stored at −20 °C until real-time PCR was applied. Prostaglandins determination Measurements of PGE2 and PGF2α levels in culture media were performed using commercially available en- zyme immunoassay kit (EIA kit; Cayman Chemical Company, 514010 for PGE2 and 516011 for PGF2α, Ann Arbor, MI, USA). Standard curve for PGE2 ranged from 9,5–5000 pg/ml and the effective dose for 50 % inhib- ition (ED 50) of the assay was 15 pg/ml. The intra- and inter-assay coefficients of variation (CV) were 4.2 % and 12.4 %, respectively. PGF2α standard curve ranged from 9,5–2000 pg/ml, ED 50 of the assay was 9 pg/ml and the intra- and inter-assay CV were on average 9.4 % and 12 %, respectively. At the protein expression level, determined by Western blotting, there were no significant differences among NANOG, OCT4 and SOX2 (P > 0.05, Fig. 6a–c). However the spatial differences in examined proteins expression was reported during IHC assay. Hormone determination Measurements of P4 in blood plasma were performed using a direct radioimmunoassay (RIA; DIASource Łupicka et al. Reproductive Biology and Endocrinology (2015) 13:110 Page 6 of 13 Table 1 Oligonucleotide sequences used for real-time PCR Gene Oligonucleotide sequences Product size GeneBank (bp) vimentin FWD 5’-GACCTGGAGCGTAAAGTGG-3’ 108 BC118269 REV 5’-GACATGCTGTTCTTGAATCTGG-3 desmin FWD 5’-GACCCAGGCAGCCAACAAG-3’ 100 BC133410 REV 5’-GTCGATCTCGCAGGTGTAGG-3’ NANOG FWD 5’-TGCATTTGCTGGAGACTGAG-3’ 107 DQ069776 REV 5’- GTCCCGGTCAAGAAACAAAA-3’ OCT4 FWD 5’-AGGTGTTCAGCCAAACGACTA-3’ 195 FD381287.1 REV 5’-TCTCCTGCAGATTCTCGTTGT-3’ SOX2 FWD 5’-GCACATGAACGGCTGGAGCAACG-3’ 218 JQ231229.1 REV 5’-TGCTGCGAGTAGGACATGCTGTAGG-3’ GAPDH FWD 5’-CACCCTCAAGATTGTCAGCA-3’ 103 BC102589 REV 5’-GGTCATAAGTCCCTCCACGA-3’ ImmunoAssays S.A., KIP1458, Nivelles, Belgium). The standard curve ranged from 0.12–36 ng/ml and the effective dose for 50 % inhibition (ED 50) of the assay was 0.05 ng/ml. The intra- and inter-assay coeffi- cients of variation (CV) were 6.5and 8.6 %, respectively. compared with normal uteri (P < 0.05, Fig. 4a, b). There was no significant difference in SOX2 mRNA expression between control and adenomyotic uteri (P > 0.05, Fig. 4c). Immunohistochemistry revealed expression of all three pluripotency markers, NANOG, OCT4 and SOX2, in nor- mal uterine tissues (Fig. 5c, e, g) as well as in adenomyotic samples (Fig. 5d, f, h). The proteins examined were mainly localised in the endometrium, however, in the case of ade- nomyotic tissues the immunoreactivity was also high in the myometrial compartment of the uterus and in adenomyo- tic, ectopic glands (Fig. 5d, f, h). Statistical analysis Expression of all genes of the three transcription factors did not differ significantly between cultured stromal cells isolated from adenomyotic uteri compared to those iso- lated from control tissues (P > 0.05, Fig. 7a–c). Whereas, mRNA expression of NANOG, OCT4 and SOX2 in cul- tured uterine myometrial cells isolated from cows with adenomyosis was increased compared to those isolated from normal uteri (P < 0.05, Fig. 7d–f). Statistically significant differences between groups in the experiments were evaluated using Student’s t-test (GraphPad PRISM Version 5.00, San Diego, CA, USA). All data were expressed as means ± SEM. Differences were analysed between control and adenomyotic cows, and were considered significant at P < 0.05. corresponding cells isolated from normal uteri (P < 0.05, Fig. 8e, f). corresponding cells isolated from normal uteri (P < 0.05, Fig. 8e, f). Results Protein expression of NANOG and SOX2 was signifi- cantly decreased in stromal cells isolated from uteri with adenomyosis compared to those obtained from normal uteri (P < 0.05, Fig. 8a, c). Protein expression of both transcription factors OCT4 and SOX2 was higher in cul- tured myometrial cells from adenomyotic tissues than in mRNA expression, immunolocalisation and protein expression of pluripotency markers NANOG, OCT4 and SOX2 in uterine tissue of cows with adenomyosis mRNA expression of transcription factors NANOG and OCT4 was increased in adenomyotic uterine tissue mRNA expression, immunolocalisation and protein expression of pluripotency markers NANOG, OCT4 and SOX2 in uterine tissue of cows with adenomyosis mRNA expression of transcription factors NANOG and OCT4 was increased in adenomyotic uterine tissue Łupicka et al. Reproductive Biology and Endocrinology (2015) 13:110 Page 7 of 13 0 1 2 3 4 * OCT4/GAPDH mRNA expression (arbitrary units) 1 2 3 4 X2/GAPDH mRNA expression (arbitrary units) 0.0 0.5 1.0 1.5 2.0 2.5 * NANOG/GAPDH mRNA expression (arbitrary units) A B C 0.0 0.5 1.0 1.5 2.0 2.5 * NANOG/GAPDH mRNA expression (arbitrary units) A Fig. 4 mRNA expression of pluripotency markers NANOG a, OCT4 b and SOX2 c in uterine tissues obtained from control cows and from cows with adenomyosis. Data were normalized against glyceraldehyde-3- phosphate dehydrogenase (GAPDH). Bars represent the mean ± SEM. Asterisks indicate statistical difference between uterine normal and adenomyotic tissues (P < 0.05), as determined by Student’s t-test. C – tissues obtained from control cows, ADENO – tissues obtained from cows with adenomyosis A Fig. 4 mRNA expression of pluripotency markers NANOG a, OCT4 b and SOX2 c in uterine tissues obtained from control cows and from cows with adenomyosis. Data were normalized against glyceraldehyde-3- phosphate dehydrogenase (GAPDH). Bars represent the mean ± SEM. Asterisks indicate statistical difference between uterine normal and adenomyotic tissues (P < 0.05), as determined by Student’s t-test. C – tissues obtained from control cows, ADENO – tissues obtained from cows with adenomyosis Discussion Adenomyosis is a uterine proliferative dysfunction which aetiology is still unclear. One possible mechanism of its development implies the involvement of uterine stem cells, which abnormal proliferation and differentiation may lead to formation of glandular foci within the myo- metrium [2, 12]. In our previous study, we confirmed the existence of pluripotent/multipotent cells in the bovine uterus [19]. The present research focused on determining expression of pluripotency markers in ade- nomyotic uterine tissues and cells. We confirmed that pluripotency markers are expressed in adenomyotic endometrial tissues and in glandular nests within the myometrium, and that mRNA expression for NANOG and OCT4 was higher in dysfunctional tissue compared to the control; however, the tissue protein results deter- mined by Western blotting did not confirm these differ- ences. Moreover, we have demonstrated that both mRNA and protein levels for OCT4 and SOX2 were in- creased in cultured primary myometrial cells isolated from adenomyotic uteri compared to the cells isolated from normal tissues. However, in stromal cells protein expression of NANOG and SOX2 was significantly de- creased in the case of adenomyosis. To our knowledge, this is the first study to report expression of pluripotency markers in the bovine uterus with adenomyosis. 0 1 2 3 4 * OCT4/GAPDH mRNA expression (arbitrary units) B B C ADENO 0 1 2 3 4 SOX2/GAPDH mRNA expression (arbitrary units) C C In women, the hypothesis of uterine stem cell involve- ment in development of uterine dysfunction has been widely studied [11, 29–31]. Moreover, the recent report of Chen et al. (2014) showed increased expression of another stem cell marker, Musashi-1, in adenomyotic eutopic and ectopic endometrium of women [32]. The presence of pluripotent/multipotent cells in the bovine uterus suggests their possible role in development of uterine dysfunction [19, 33, 34]. Nevertheless, there are no studies on the involvement of pluripotent cells in pathogenesis of adenomyosis or any other uterine dis- eases in cows. Our present study is consistent with one conducted in women [32], because we demonstrated in- creased expression of pluripotency markers in myome- trial cells isolated from adenomyotic uteri. However, in Łupicka et al. Reproductive Biology and Endocrinology (2015) 13:110 Page 8 of 13 Fig. 5 Immunodetection of pluripotency markers in uterine tissues from control cows and from cows with adenomyosis. Discussion a, b – haematoxylin and eosin stained slides of control and adenomyotic uterus, respectively; c, d – NANOG immunodetection in control and adenomyotic tissue, respectively; e, f – immunolocalisation of OCT4 in normal and adenomyotic tissue, respectively; g, h – SOX2 immunodetection in control and adenomyotic tissue, respectively; i, j, k – no Ab, negative controls for NANOG, OCT4 and SOX2, respectively. Unspecific IgG controls (pictures not shown) served similar pictures as no Ab control. Arrows indicate the most intense histochemical reactions; dotted line indicate endometrial-myometrial border; e – endometrium, m – myometrium, es – endometrial stroma, eg – endometrial gland, a – adenomyotic lesion, v – vessel. Scale bars: 20 μm Fig. 5 Immunodetection of pluripotency markers in uterine tissues from control cows and from cows with adenomyosis. a, b – haematoxylin and eosin stained slides of control and adenomyotic uterus, respectively; c, d – NANOG immunodetection in control and adenomyotic tissue, respectively; e, f – immunolocalisation of OCT4 in normal and adenomyotic tissue, respectively; g, h – SOX2 immunodetection in control and adenomyotic tissue, respectively; i, j, k – no Ab, negative controls for NANOG, OCT4 and SOX2, respectively. Unspecific IgG controls (pictures not shown) served similar pictures as no Ab control. Arrows indicate the most intense histochemical reactions; dotted line indicate endometrial-myometrial border; e – endometrium, m – myometrium, es – endometrial stroma, eg – endometrial gland, a – adenomyotic lesion, v – vessel. Scale bars: 20 μm Page 9 of 13 Łupicka et al. Reproductive Biology and Endocrinology (2015) 13:110 0.0 0.5 1.0 1.5 2.0 2.5 OCT4/GAPDH protein expression (arbitrary units) C ADENO 0.0 0.5 1.0 1.5 2.0 SOX2/GAPDH protein expression (arbitrary units) 0.0 0.5 1.0 1.5 NANOG/GAPDH protein expression (arbitrary units) A B C D 0.0 0.5 1.0 1.5 NANOG/GAPDH protein expression (arbitrary units) A Fig. 6 Protein expression of NANOG a, OCT4 b and SOX2 c in bovine uterine tissues obtained from control cows and from cows with adenomyosis. Data were normalized against glyceraldehyde- 3-phosphate dehydrogenase (GAPDH). Bars represent the mean ± SEM. There were no statistical differences between uterine normal and adenomyotic tissues (P > 0.05), as determined by Student’s t-test. Representative blots for NANOG, OCT4, SOX2 and GAPDH are shown below the graphs d. Discussion MM – molecular weight marker, C – tissues obtained from control cows, ADENO – tissues obtained from cows with adenomyosis whole uterine tissue, at the protein level evaluated by Western blotting we did not find significant differences in NANOG, OCT4 and SOX2 expression, in contrast to our mRNA results. Moreover, mRNA expression of plur- ipotency markers in stromal primary cells also did not reflect protein expression. The reason for this inconsist- ency may be posttranslational modifications of the pro- teins, which results in different protein expression pattern when comparing to mRNA. However in myome- trial cells mRNA expression was consistent with protein expression. These outcomes together with IHC results indicate that the pattern of pluripotency markers expres- sion in adenomyotic tissue may depends on the uterine compartment: endometrium or myometrium. Our ex- periments performed on the tissue showed general expression of pluripotency markers in adenomyotic uterus, which included its expression in stem cells that migrate to uterus through blood and lymphatic vessels, e.g. cells of medullary origin [31]. Whereas in vitro ex- periment revealed pluripotency markers expression in particular uterine cells, originated from endometrium or myometrium. In our previous study we showed that the main source of stem cells in the bovine uterus is stromal layer [19], therefore we showed changed expression pattern of pluripotency markers in case of uterine pathology – adenomyosis. 0.0 0.5 1.0 1.5 2.0 2.5 OCT4/GAPDH protein expression (arbitrary units) B B C ADENO 0.0 0.5 1.0 1.5 2.0 SOX2/GAPDH protein expression (arbitrary units) C C In our study, we also demonstrated decreased protein expression of NANOG and SOX2 in cultured primary endometrial stromal cells from adenomyotic tissues compared to the controls, which suggests that their potential to differentiate into glands within the endomet- rium may be reduced. Proliferation of endometrial cells and formation of uterine glands is extremely important for successful implantation and early embryo development [35]. In high fertility heifers, endometrial expression of genes involved in cell proliferation, tissue morphology and development was increased when compared to low fertility heifers [36]. Thus, during adenomyosis, disturbed proliferative processes in the endometrium of cows may impair their fertility [18, 37]. Moreover, because the myometrium is a prolific source of pluripo- tent cells during adenomyosis, this may imply a higher differentiation potential of cells in this compartment D D Łupicka et al. Discussion Reproductive Biology and Endocrinology (2015) 13:110 Page 10 of 13 0.0 0.5 1.0 1.5 NANOG/GAPDH mRNA expression (arbitrary units) 0.0 0.5 1.0 1.5 2.0 * NANOG/GAPDH mRNA expression (arbitrary units) 0.0 0.5 1.0 1.5 2.0 OCT4/GAPDH mRNA expression (arbitrary units) 0.0 0.5 1.0 1.5 2.0 * OCT4/GAPDH mRNA expression (arbitrary units) C ADENO 0 1 2 3 4 stromal cells SOX2/GAPDH mRNA expression (arbitrary units) C ADENO 0 1 2 3 4 ** myometrial cells SOX2/GAPDH mRNA expression (arbitrary units) A B C D E F Fig. 7 mRNA expression of pluripotency markers in uterine cells isolated from control cows and from cows with adenomyosis. NANOG a OCT4 b and SOX2 c mRNA expression in uterine stromal cells. NANOG d OCT4 e and SOX2 f mRNA expression in uterine myometrial cells. Data were normalized against glyceraldehyde-3-phosphate dehydrogenase (GAPDH). Bars represent the mean ± SEM. Asterisks indicate statistical differences between uterine normal and adenomyotic tissue (*P < 0.05; **P < 0.01), as determined by Student’s t-test. C – cells obtained from control cows, ADENO – cells obtained from cows with adenomyosis 0.0 0.5 1.0 1.5 NANOG/GAPDH mRNA expression (arbitrary units) A 0.0 0.5 1.0 1.5 2.0 * NANOG/GAPDH mRNA expression (arbitrary units) D D 0.0 0.5 1.0 1.5 2.0 * OCT4/GAPDH mRNA expression (arbitrary units) E 0.0 0.5 1.0 1.5 2.0 OCT4/GAPDH mRNA expression (arbitrary units) B E B C ADENO 0 1 2 3 4 ** myometrial cells SOX2/GAPDH mRNA expression (arbitrary units) F C ADENO 0 1 2 3 4 stromal cells SOX2/GAPDH mRNA expression (arbitrary units) C C F Fig. 7 mRNA expression of pluripotency markers in uterine cells isolated from control cows and from cows with adenomyosis. NANOG a OCT4 b and SOX2 c mRNA expression in uterine stromal cells. NANOG d OCT4 e and SOX2 f mRNA expression in uterine myometrial cells. Data were normalized against glyceraldehyde-3-phosphate dehydrogenase (GAPDH). Bars represent the mean ± SEM. Asterisks indicate statistical differences between uterine normal and adenomyotic tissue (*P < 0.05; **P < 0.01), as determined by Student’s t-test. C – cells obtained from control cows, ADENO – cells obtained from cows with adenomyosis of the uterus, and may trigger the invasion of glandular nests deep within. diseases such as endometriosis, endometrial cancers and adenomyosis [11, 29]. Bovine endometrial cell prolifera- tion is also regulated by ovarian hormones: oestradiol and progesterone [40]. Discussion Adenomyosis is an oestrogen- dependent dysfunction [4, 30], thus it is suggested that hormone disturbances may relate to uterine stem cell functioning during adenomyosis [29]; however, this issue require further studies. In mares, defective responses of Maintenance of uterine cell functions, including prolif- eration, during cyclic endometrial remodelling is the main factor underlying female fertility in many species and is controlled by ovarian hormones [29, 37–39]. In women, abnormalities in endometrial cell proliferation potentially leads to development of gynaecological Łupicka et al. Reproductive Biology and Endocrinology (2015) 13:110 Page 11 of 13 0.0 0.5 1.0 1.5 2.0 ** NANOG/GAPDH protein expression (arbitrary units) 0.0 0.5 1.0 1.5 NANOG/GAPDH protein expression (arbitrary units) 0.0 0.5 1.0 1.5 2.0 2.5 OCT3/4/GAPDH protein expression (arbitrary units) 0.0 0.5 1.0 1.5 2.0 * OCT3/4/GAPDH protein expression (arbitrary units) C ADENO 0.0 0.5 1.0 1.5 * stromal cells SOX2/GAPDH protein expression (arbitrary units) C ADENO 0.0 0.5 1.0 1.5 * myometrial cells SOX2/GAPDH protein expression (arbitrary units) A B C D E F G Fig. 8 (See legend on next page.) 0.0 0.5 1.0 1.5 2.0 ** NANOG/GAPDH protein expression (arbitrary units) A 0.0 0.5 1.0 1.5 NANOG/GAPDH protein expression (arbitrary units) D D 0.0 0.5 1.0 1.5 2.0 * OCT3/4/GAPDH protein expression (arbitrary units) E 0.0 0.5 1.0 1.5 2.0 2.5 OCT3/4/GAPDH protein expression (arbitrary units) B E B C ADENO 0.0 0.5 1.0 1.5 * stromal cells SOX2/GAPDH protein expression (arbitrary units) C C ADENO 0.0 0.5 1.0 1.5 * myometrial cells SOX2/GAPDH protein expression (arbitrary units) F C F G Fig. 8 (See legend on next page.) G xt page.) G Łupicka et al. Reproductive Biology and Endocrinology (2015) 13:110 Łupicka et al. Reproductive Biology and Endocrinology (2015) 13:110 Page 12 of 13 (See figure on previous page.) Fig. 8 Protein expression of pluripotency markers in uterine cells isolated from control cows and from cows with adenomyosis. NANOG a OCT4 b and SOX2 c protein expression in uterine stromal cells. NANOG d OCT4 e and SOX2 f protein expression in uterine myometrial cells. Data were normalized against glyceraldehyde-3-phosphate dehydrogenase (GAPDH). Bars represent the mean ± SEM. Asterisks indicate statistical differences between uterine normal and adenomyotic tissue (*P < 0.05; **P < 0.01), as determined by Student’s t-test. Representative blots for NANOG, OCT4, SOX2 and GAPDH are shown below the graphs g. Discussion MM – molecular weight marker, C – cells obtained from control cows, ADENO – cells obtained from cows with adenomyosis endometrial glands to cyclic hormonal stimuli may con- tribute to degenerative changes in the endometrium, termed endometrosis, and result in decreased fertility [41]. These changes are also linked to functional abnor- malities of endometrial cells, especially impaired prolif- eration activity in endometrotic glandular nests [39]. Although knowledge about the involvement of uterine stem cells in pathogenesis of endometrosis is poor, re- cent studies on mare infertility caused by this dysfunc- tion suggest the utility of stem cell transplantation into uteri for therapy. Stem cells that settled in degenerative endometria during the experiments of Mambelli et al. (2014) induced proliferation of glands and improved their secretory functions [42]. These data suggest that a wide range of uterine pathologies in different species may be dependent on functions of uterine stem cells. Therefore, our present study contributes by broadening knowledge about this issue in cattle, which was not pre- viously studied in this species. Received: 18 June 2015 Accepted: 17 September 2015 Authors’ contributions MŁ and AK designed the study. MŁ performed all experiments, acquired and analysed the data. AS and BS participated in experiments execution and material collection. MŁ and AK drafted the manuscript. MŁ revised the manuscript. All authors read and approved the final manuscript. 20. Moreira L, Carvalho ECQ, Caldas-Bussiere MC. Histopathological aspects of adenomyosis in bovine uteri in different phases of the estrous cycle. Arq Brasi Med Vet Zootec. 2007;59:1097–102. 21. Miyamoto Y, Skarzynski DJ, Okuda K. Is tumor necrosis factor α a trigger for the initiation of endometrial prostaglandin F2α release at luteolysis in cattle? Biol Reprod. 2000;62:1109–15. References Stem cells in endometrium and their role in the pathogenesis of endometriosis. Ann N Y Acad Sci. 2011;1221:10–7. Competing interests 18. Katkiewicz M, Wierzchoń M, Boryczko Z. Adenomyosis of cows’ uterus – latent cause of infertility? Med Wet. 2005;61:1378–81. 18. Katkiewicz M, Wierzchoń M, Boryczko Z. Adenomyosis of cows’ uterus – latent cause of infertility? Med Wet. 2005;61:1378–81. 19. Łupicka M, Bodek G, Shpigel N, Elnekave E, Korzekwa AJ. Identification of pluripotent cells in bovine uterus: in situ and in vitro studies. Reproduction. 2015;149:1–12. Conclusions 12. Calloni R, Cordero EA, Henriques JA, Bonatto D. Reviewing and updating the major molecular markers for stem cells. Stem Cells Dev. 2013;22:1455–76. 12. Calloni R, Cordero EA, Henriques JA, Bonatto D. Reviewing and updating the major molecular markers for stem cells. Stem Cells Dev. 2013;22:1455–76. In conclusion, our results indicate that significant changes occur in the expression of pluripotency markers, NANOG, OCT4 and SOX2, in bovine adenomyotic tis- sues compared to normal uteri. Moreover, this expression was dependent on the uterine compartment: in general, it was decreased in the endometrial layer and the converse in the myometrial layer. These data suggest the involve- ment of uterine multipotent/pluripotent cells in develop- ment of adenomyosis. Therefore our study imply that stem cells play role not only under physiological condi- tions but also in the case of uterine pathologies in cows. 13. Lee KS, Nah J-J, Lee B-C, Lee HT, Lee H-S, So B-J, et al. Maintenance and characterization of multipotent mesenchymal stem cells isolated from canine umbilical cord matrix by collagenase digestion. Res Vet Sci. 2013;94:144–51. 14. Stimpfel M, Skutella T, Cvjeticanin B, Meznaric M, Dovc P, Novakovic S, et al. Isolation, characterization and differentiation of cells expressing pluripotent/ multipotent markers from adult human ovaries. Cell Tissue Res. 2013;354:593–607 14. Stimpfel M, Skutella T, Cvjeticanin B, Meznaric M, Dovc P, Novakovic S, et al. Isolation, characterization and differentiation of cells expressing pluripotent/ multipotent markers from adult human ovaries. Cell Tissue Res. 2013;354:593–607 15. Wang M-L, Chiou S-H, Wu C-W. Targeting cancer stem cells: emerging role of Nanog transcription factor. OncoTargets and Therapy. 2013;6:1207–20. 15. Wang M-L, Chiou S-H, Wu C-W. Targeting cancer stem cells: emerging role of Nanog transcription factor. OncoTargets and Therapy. 2013;6:1207–20. 16. Gargett CE. Stem cells in gynaecology. Aust N Z J Obstet Gynaecol. 2004;44:380–6. 16. Gargett CE. Stem cells in gynaecology. Aust N Z J Obstet Gynaecol. 2004;44:380–6. 17. Xu J, Hu FF, Cui YG, Luo J, Jiang CY, Gao L, et al. Effect of estradiol on proliferation and differentiation of side population stem/progenitor cells from murine endometrium. Reprod Biol Endocrinol. 2011;9:103. 17. Xu J, Hu FF, Cui YG, Luo J, Jiang CY, Gao L, et al. Effect of estradiol on proliferation and differentiation of side population stem/progenitor cells from murine endometrium. Reprod Biol Endocrinol. 2011;9:103. Competing interests The authors declare that they have no competing interests. References 1. Azziz R. Adenomyosis: current prospective. Obstet Gynecol Clin North Am. 1989;16:221–35. 2. Ferenczy A. Pathophysiology of adenomyosis. Hum Reprod. 1998;4:312–22. 2. Ferenczy A. Pathophysiology of adenomyosis. Hum Reprod. 1998;4:312–22. 3. Moreira L, de Carvahlo EC Q, Caldas-Bussiere MC. Differential immunohistochemical expression of matrix metalloproteinase-2 and tissue inhibitor of metalloproteinase-2 in cow uteri with adenomyosis during follicular phase. Vet Res Commun. 2011;35:261–9. 3. Moreira L, de Carvahlo EC Q, Caldas-Bussiere MC. Differential immunohistochemical expression of matrix metalloproteinase-2 and tissue inhibitor of metalloproteinase-2 in cow uteri with adenomyosis during follicular phase. Vet Res Commun. 2011;35:261–9. 4. Korzekwa AJ, Bah MM, Gęstwicka M, Socha B, Skarżyński DJ. Adenomyosis in the bovine uterus: correlation between frequency, age, and 17β-estradiol – progesterone equilibrium. Theriogenology. 2013;79:165–72. 4. Korzekwa AJ, Bah MM, Gęstwicka M, Socha B, Skarżyński DJ. Adenomyosis in the bovine uterus: correlation between frequency, age, and 17β-estradiol – progesterone equilibrium. Theriogenology. 2013;79:165–72. 5. Campo S, Campo V, Benagiano G. Infertility and adenomyosis. Obstet Gynecol Int. 2012; doi.:10.1155/2012/786132: 1–8. 5. Campo S, Campo V, Benagiano G. Infertility and adenomyosis. Obstet Gynecol Int. 2012; doi.:10.1155/2012/786132: 1–8. 6. Levgur M, Abadi MA, Tucker A. Adenomyosis: symptoms, histology, and pregnancy terminations Obstet Gynecol 2000;95:688–91 6. Levgur M, Abadi MA, Tucker A. Adenomyosis: symptoms, histology, and pregnancy terminations. Obstet Gynecol. 2000;95:688–91. 7. Gargett CE. Uterine stem cells: What is the evidence? Hum Reprod Update. 2006;13:87–101. 7. Gargett CE. Uterine stem cells: What is the evidence? Hum Reprod Update. 2006;13:87–101. 8. Gargett CE, Nguyen HPT, Ye L. Endometrial regeneration and endometrial stem/progenitor cells. Rev Endocr Metab Disord. 2012;13:235–51. 8. Gargett CE, Nguyen HPT, Ye L. Endometrial regeneration and endometrial stem/progenitor cells. Rev Endocr Metab Disord. 2012;13:235–51. 9. Ota H, Igarashi S, Hatazawa J, Tanaka T. Is adenomyosis an immune disease? Hum Reprod Update. 1998;4:360–7. 9. Ota H, Igarashi S, Hatazawa J, Tanaka T. Is adenomyosis an immune disease? Hum Reprod Update. 1998;4:360–7. 10. Korzekwa A, Łupicka M, Socha B, Mannelli C, Skarzynski DJ. Is adenomyosis a problem in reproduction and fertility? Pol J Vet Sci. 2014;17:187–94. 10. Korzekwa A, Łupicka M, Socha B, Mannelli C, Skarzynski DJ. Is adenomyosis a problem in reproduction and fertility? Pol J Vet Sci. 2014;17:187–94. 11. Figueira PGM, Abrão MS, Krikun G, Tylor H. Stem cells in endometrium and their role in the pathogenesis of endometriosis. Ann N Y Acad Sci. 2011;1221:10–7. 11. Figueira PGM, Abrão MS, Krikun G, Tylor H. This work was supported by Grant-in-Aid for Scientific Research from the National Science Centre (2011/01/B/NZ5/00939). 23. Zhang Z, Paria BC, Davis DL. Pig endometrial cells in primary culture: morphology, secretion of prostaglandins and proteins, and effects of pregnancy. J Anim Sci. 1991;69:3005–15. Acknowledgements 22. Skarzynski DJ, Miyamoto Y, Okuda K. Production of prostaglandin F2α by cultured bovine endometrial cells in response to tumor necrosis factor α: cell type specificity and intracellular mechanisms. Biol Reprod. 2000;62:1116–20. The authors wish to thank W. Krzywiec for technical support and tissue collection and M. Domin - the owner of the slaughterhouse (Meat Processing Plant “Warmia”, Biskupiec, Poland) for permitting collection of the material. y y 23. Zhang Z, Paria BC, Davis DL. Pig endometrial cells in primary culture: morphology, secretion of prostaglandins and proteins, and effects of pregnancy. J Anim Sci. 1991;69:3005–15. 23. Zhang Z, Paria BC, Davis DL. Pig endometrial cells in primary culture: morphology, secretion of prostaglandins and proteins, and effects of pregnancy. J Anim Sci. 1991;69:3005–15. This work was supported by Grant-in-Aid for Scientific Research from the National Science Centre (2011/01/B/NZ5/00939). Page 13 of 13 Page 13 of 13 Łupicka et al. Reproductive Biology and Endocrinology (2015) 13:110 24. Zeiler M, Leiser R, Johnson GA, Tinneberg HR, Pfarrer C. Development of an in vitro model for bovine placentation: a comparison of the in vivo and in vitro expression of integrins and components of extracellular matrix in bovine placental cells. Cells Tissues Organs. 2007;186:229–42. bovine placental cells. Cells Tissues Organs. 2007;186:229–42. 25. Woclawek-Potocka I, Deptula K, Bah MM, Lee HY, Okuda K, Skarzynski DJ. Effects of nitric oxide and tumor necrosis factor-alpha on production of prostaglandin F2alpha and E2 in bovine endometrial cells. J Reprod Dev. 2004;50:333–40. 26. Barański W, Łukasik K, Skarżyński D, Sztachańska M, Zduńczyk S, Janowski T. Secretion of prostaglandins and leukotrienes by endometrial cells in cows with subclinical and clinical endometritis. Theriogenology. 2013;80:766–72. 27. Wróbel MH, Bedziechowski P, Mlynarczuk J, Kotwica J. Impairment of uterine smooth muscle contractions and prostaglandin secretion from cattle myometrium and corpus luteum in vitro is influenced by DDT. DDE and HCH Environ Res. 2014;132:54–61. 28. Korzekwa AJ, Bodek G, Bukowska J, Blitek A, Skarzynski DJ. Characterization of bovine immortalized luteal endothelial cells: action of cytokines on production and content of arachidonic acid metabolites. Reprod Biol Endocrinol. 2011;9:1–9. 29. Gargett CE, Chan RW, Schwab KE. Hormone and growth factor signaling in endometrial renewal: role of stem/progenitor cells. Mol Cell Endocrinol. 2008;288:22–9. 30. Chen YJ, Li HY, Hunag CH, Twu NF, Yen MS, Wang PH, et al. Oestrogen- induced epithelial-mesenchymal transition of endometrial epithelial cells contributes to the development of adenomyosis. J Pathol. 2010;222:261–70. 31. Acknowledgements Maruyama T, Masuda H, Ono M, Kajitani T, Yoshimura Y. Human stem/ progenitor cells: their possible role in uterine physiology and pathology. Reproduction. 2010;140:11–22. 32. Chen YZ, Wang JH, Yan J, Liang Y, Zhang XF, Zhou F. Increased expression of adult stem cell marker Musashi-1 in the ectopic endometrium of adenomyosis does not correlate with serum estradiol and progesterone levels. Eur J Obstet Gynecol Reprod Biol. 2014;173:88–93. 33. Donofrio G, Franceschi V, Capocefalo A, Cavirani S, Sheldon IM. Bovine endometrial stromal cells display osteogenic properties. Reprod Biol Endocrinol. 2008;65:1–9. 34. Cabezas J, Lara E, Pacha P, Rojas D, Veraguas D, Saravia F, et al. The endometrium of cycling cows contains population of putative mesenchymal progenitor cells. Reprod Dom Anim. 2014;49:550–9. 35. Gray CA, Bartol FF, Tarleton BJ, Wiley AA, Johnson GA, Bazer FW, et al. Developmental biology of uterine glands. Biol Reprod. 2001;65:1311–23. 36. Killeen AP, Morris DG, Kenny DA, Mullen MP, Diskin MG, Waters SM. Global gene expression in endometrium of high and low fertility heifers during the mid-luteal phase of the estrous cycle. BMC Genomics. 2014;15:1–18. 37. Arai M, Yoshioka M, Tasaki Y, Okuda K. Remodeling of bovine endometrium throughout the estrous cycle. Anim Reprod Sci. 2013;142:1–9. 38. Sato T, Fukazawa Y, Kojima H, Enari M, Iguchi T, Ohta Y. Apoptotic cell death during the estrous cycle in the rat uterus and vagina. Anat Rec. 1997;248:76–83. 39. Gerstenberg C, Allen WR, Stewart F. Cell proliferation patterns in the equine endometrium throughout the non-pregnant reproductive cycle. J Reprod Fertil. 1999;116:167–75. 40. Xiao CW, Goff AK. Differential effects of oestradiol and progesterone on proliferation and morphology of cultured bovine uterine epithelial and stromal cells. J Reprod Fertil. 1998;112:315–24. 41. Schoon HA, Schoon D, Klug E. Die Endometriumbiopsie bei der Stute im klinish-gynakologischen Kontext. Pferdeheilkunde. 1997;13:453–64. Acknowledgements Submit your next manuscript to BioMed Central and take full advantage of: • Convenient online submission • Thorough peer review • No space constraints or color figure charges • Immediate publication on acceptance • Inclusion in PubMed, CAS, Scopus and Google Scholar • Research which is freely available for redistribution Submit your manuscript at www.biomedcentral.com/submit Submit your next manuscript to BioMed Central and take full advantage of: • Convenient online submission • Thorough peer review • No space constraints or color figure charges • Immediate publication on acceptance • Inclusion in PubMed, CAS, Scopus and Google Scholar • Research which is freely available for redistribution Submit your manuscript at www.biomedcentral.com/submit Submit your next manuscript to BioMed Central and take full advantage of: • Convenient online submission • Thorough peer review • No space constraints or color figure charges • Immediate publication on acceptance • Inclusion in PubMed, CAS, Scopus and Google Scholar • Research which is freely available for redistribution Submit your manuscript at www.biomedcentral.com/submit 42. Mambelli LI, Mattos RC, Winter GHZ, Madeiro DS, Morais BP, Malschitzky E, et al. Changes in expression pattern of selected endometrial proteins following mesenchymal stem cells infusion in mares with endometrosis. Plos One. 2014;9:e97889. Submit your next manuscript to BioMed Central and take full advantage of: Submit your next manuscript to BioMed Central and take full advantage of: • Convenient online submission
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Isma‘il Gasprinsky on integration of Muslims into socio-political space of the Russian Empire
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Minbar. Islamic Studies. 2022;15(3) DOI 10.31162/2618-9569-2022-15-3-604-620 УДК 93/94 Original Paper Оригинальная статья DOI 10.31162/2618-9569-2022-15-3-604-620 УДК 93/94 Тихонова Н.Е. Ключевые слова: Исмаил Гаспринский; «Переводчик-Терджиман»; российские мусуль- мане; магометанские духовные правления Ключевые слова: Исмаил Гаспринский; «Переводчик-Терджиман»; российские мусуль- мане; магометанские духовные правления Для цитирования: Тихонова Н.Е. Исмаил Гаспринский об интеграции мусульман в социально-политическое пространство Российской империи. Minbar. Islamic Studies. 2022;15(3):604–620. DOI: 10.31162/2618-9569-2022-15-3-604-620 Для цитирования: Тихонова Н.Е. Исмаил Гаспринский об интеграции мусульман в социально-политическое пространство Российской империи. Minbar. Islamic Studies. 2022;15(3):604–620. DOI: 10.31162/2618-9569-2022-15-3-604-620 Информация о спонсорстве: Исследование осуществлено в рамках Программы фунда- ментальных исследований НИУ ВШЭ в 2022 году. Н.Е. Тихонова1а Н.Е. Тихонова 1Центр исторических исследований, Национальный исследовательский университет «Высшая школа экономики» (НИУ ВШЭ), г. Санкт-Петербург, Российская Федерация аORCID: https://orcid.org/0000-0003-0462-8711, e-mail: nadezhdatikhonova@yahoo.com Резюме: В статье рассматривается социально-политический «мусульманский проект», выдвинутый на рубеже XIX–XX вв. известным мусульманским деятелем, издателем и пе- дагогом Исмаилом Гаспринским (1851–1914), в свете проблемы интеграции российских мусульман. у у Ключевым фактором по обеспечению лучшей социальной мобильности мусульман в Российской империи представляются разнообразные инициативы Исмаила Гаспринского в сфере образования. Кроме того, с первых лет издания собственной газеты «Переводчик-Терджиман» Ис- маил Гаспринский систематически выступал за реструктуризацию и постепенную унифи- кацию магометанских духовных правлений, считая важным наличие данного института с точки зрения рационализации управления мусульманами и сохранения их культурного партикуляризма. Многим позже, на фоне Русской революции 1905–1907 гг., данная идея выстроилась в парадигму «национально-культурной автономии» для российских мусульман. Эту идею, в частности, выдвигал Всероссийский мусульманский союз, в руководство которого вхо- дил и Гаспринский. В статье утверждается, что, несмотря на постепенную трансформацию освещавшихся в рамках данного проекта вопросов, в нем прослеживается двойственная, но последова- тельная цель. С одной стороны, стремление консолидировать российских мусульман как особую группу имперских подданых и донести до них информацию об имеющихся в им- перии потенциальных социальных возможностях, а с другой – показать властям готов- ность мусульман к интеграции (но не ассимиляции) в имперский социум. Контент доступен под лицензией Creative Commons Attribution 4.0 License. This work is licensed under a Creative Commons Attribution 4.0 License. © Н.Е. Тихонова, 2022 604 Isma‘il gasprinsky on integration of Muslims into socio- political space of the russian Empire N.E. Tikhonova1а 1Centre for Historical Research, National Research University Higher School of Economics (HSE University), Saint Petersburg, the Russian Federation аORCID: https://orcid.org/0000-0003-0462-8711, e-mail: nadezhdatikhonova@yahoo.com Abstract: The article examines the socio-political “Muslim project” put forward at the turn of the XIX–XX centuries by the famous Muslim fi gure, publisher and teacher Isma’il Gasprinsky (1851–1914), in the light of the problem of integration of Russian Muslims. A key factor in ensuring better social mobility of Muslims in the Russian Empire is the diverse initiatives of Isma’il Gasprinsky in the fi eld of education. Moreover, Isma‘il Gasprinsky consistently advocated for restructuration and gradual unifi cation of the Muslim spiritual assemblies in his own “Perevodchik-Terjiman” newspaper. At the same time, he justifi ed the existence of this institution as a rational governing body for imperial Muslim subjects. Under the circumstances of the Russian Revolution of 1905 his attitude towards unifi cation of Muslim spiritual assemblies has evolved into a paradigm of “national-cultural autonomy” for Russian Muslims. This idea, in particular, was proposed by the All-Russian Muslim Union, affi liated with Gasprinsky. fi y This article argues that despite the questions, which this project posed, gradually transformed, the project itself kept following its dual, though, consistent aim. On the one hand, to consolidate Muslims as a particular group of subjects and inform them about the potential social opportunities in the imperial society, on the other, to assure the offi cial authorities that imperial Muslims are eager to be integrated (not assimilated, though). Keywords: Isma‘il Gasprinsky; “Perevodchik-Terjiman”; Russian Muslims; Muslim Spiritual Assemblies ISSN 2618-9569 605 Minbar. Islamic Studies. 2022;15(3) For citation: Tikhonova N.E. Isma‘il Gasprinsky on the integration of Muslims into socio- political space of the Russian Empire. Minbar. Islamic Studies. 2022;15(3):604–620 (In Russ.) DOI: 10.31162/2618-9569-2022-15-3-604-620 Sponsorship Information: This article is an output of a research project implemented as a part of the Basic Research Program at the National Research University Higher School of Economics (HSE University). 1 Газета «Переводчик-Терджиман» (араб. Тарджуман/ ; тат. Тәрҗеман; крымско-тат. Терджиман; турец. Tercüman) издавалась с 1883 по 1918 гг. в г. Бахчисарае. Сам Гаспринский возглавлял газету до 1914 г., затем она перешла по наследству его старшему сыну Рефату. Данная газета до 1905 года издавалась параллельными текстами на двух языках (русском и тюркском), что и определило ее название. С 1906 г. русский раздел газеты был значительно сокращен, а двуязычные материалы газеты отныне не представляли собой параллельный перевод, являясь самостоятельными публикациями. у 2 Здесь и далее по тексту приводятся цитаты из русскоязычной части «Переводчика-Терджимана», если особо не оговорено иное. Перевод тюркоязычных статей на русский язык – автора статьи [Н. Т.]. 3 «Новый метод» (усуль-и джадид) преподавания в мектебах подразумевал внедрение звукового метода при обучении чтению и письму на тюркских языках на арабской графике, а также введение общеобразовательных дисциплин (математики, географии, истории, русского языка) в дополнение к религиозным предметам. В контексте медресе «новый метод» приобрел значение секуляризации и профилизации их учебной программы. Введение «Между нами [российскими мусульманами] вовсе нет просвещенных, сведу- щих и понимающих время людей, а в них мы часто нуждаемся как в болезнях, так и в здоровом состоянии», – писал в 1883 г., в первый год издания своей газеты «Пере- водчик-Терджиман»1 (далее – «Терджиман»), известный мусульманский деятель поздней Российской империи Исмаил Гаспринский (1851–1914). Под словами «сведущие» и «понимающие время» он подразумевал совершенно конкретные качества, а именно: достаточный уровень образования, позволяющий занять по- зиции в имперской иерархии, и прогрессивные взгляды. «Чтобы эти люди были, – продолжал он, – надо, чтобы дети наши, хоть дети людей состоятельных, учились, чтобы быть чиновниками, докторами, судьями, адвокатами и прочее. Учи- лищ в России много; права нам даны достаточные» [1]2. Подобные заявления Гаспринского показывают наличие не только потен- циального «запроса» в среде мусульман занимать определенные должности, но и соответствующих возможностей в имперском обществе. Так, пореформенный период 1880-х гг., когда Гаспринский публично выступил с социально-полити- ческим проектом для российских мусульман, открывал для них более широкие социальные, в том числе карьерные, возможности. В частности, как показал на примере Казани и Крыма Штефан Кирмсе в своей книге «Законная империя» (The Lawful Empire), введение в России в период Великих реформ 1860–70-х гг. новых судов создало более инклюзивную среду для мусульман этих регионов сравнительно с предшествующим периодом [2, c. 275–294]. В новой судебной си- 1 Газета «Переводчик-Терджиман» (араб. Тарджуман/ ; тат. Тәрҗеман; крымско-тат. Терджиман; турец. Tercüman) издавалась с 1883 по 1918 гг. в г. Бахчисарае. Сам Гаспринский возглавлял газету до 1914 г., затем она перешла по наследству его старшему сыну Рефату. Данная газета до 1905 года издавалась параллельными текстами на двух языках (русском и тюркском), что и определило ее название. С 1906 г. русский раздел газеты был значительно сокращен, а двуязычные материалы газеты отныне не представляли собой параллельный перевод, являясь самостоятельными публикациями. у 2 Здесь и далее по тексту приводятся цитаты из русскоязычной части «Переводчика-Терджимана», если особо не оговорено иное. Перевод тюркоязычных статей на русский язык – автора статьи [Н. Т.]. ISSN 2618-9569 606 Тихонова Н.Е. Тихонова Н.Е. стеме мусульмане отныне могли выступать не только сторонами судебных про- цессов, но и судьями, адвокатами, переводчиками. Возможности вертикальной социальной мобильности для них оставались, однако, ограниченными. стеме мусульмане отныне могли выступать не только сторонами судебных про- цессов, но и судьями, адвокатами, переводчиками. Возможности вертикальной социальной мобильности для них оставались, однако, ограниченными. Вместе с тем период правления двух последних российских императоров Александра III и Николая II ознаменовался усилением национализирующей поли- тики центра и попытками создать «национальное государство» в многоликой, по- ликонфессиональной империи [3]. В Российской империи при этом не сложилось единообразной, последовательной политики в отношении многонационального населения. Джейн Бурбанк охарактеризовала эту систему как «режим имперских прав» (imperial rights regime), суть которой заключалась в дифференцированном управлении неоднородными группами подданных, объединенных по признаку сословной, конфессиональной или этнической принадлежности [4]. Существо- вавшая система признавала и во многом закрепляла культурные различия внутри населения империи, однако применялась в отношении разных групп подданных неравномерно и не всегда систематически. Проект Гаспринского, таким образом, с одной стороны, может рассматри- ваться как ответ на вызовы «сверху» и отражение сложной имперской системы управления. С другой же, он направлялся на внутреннюю консолидацию мусуль- ман как отдельной группы подданных. В этом ключе он охватывал именно те сфе- ры мусульманской жизни, обновление которых могло обеспечить более успеш- ную интеграцию российских мусульман в имперское социально-политическое пространство, а именно: реформирование традиционной мусульманской системы образования согласно «новому методу» (усуль-и джадид)3 и популяризация свет- ского образования как такового, а также реструктуризация существующих маго- метанских духовных правлений [5]. Вклад Гаспринского в развитие мусульманского сообщества широко изве- стен и, как представляется, не требует детальных пояснений. Сам Гаспринский признан выдающимся мусульманским просветителем и реформатором. Предла- гаемые им реформы при этом направлялись на модернизацию по европейской модели. Как отмечали в своих работах Э. Лаззерини и М. Туна, европейские пред- ставления о модерности оказали заметное влияние на дискурс Исмаила Гаспри- 3 «Новый метод» (усуль-и джадид) преподавания в мектебах подразумевал внедрение звукового метода при обучении чтению и письму на тюркских языках на арабской графике, а также введение общеобразовательных дисциплин (математики, географии, истории, русского языка) в дополнение к религиозным предметам. В контексте медресе «новый метод» приобрел значение секуляризации и профилизации их учебной программы. ISSN 2618-9569 607 Minbar. Islamic Studies. 2022;15(3) Minbar. Islamic Studies. 2022;15(3) нского и его единомышленников-мусульман [6; 7]. Тихонова Н.Е. Однако, признавая подобное влияние, важно отметить, что «мусульманский проект» Гаспринского оконча- тельно сложился к началу XX вв., когда в России уже сформировался слой по- европейски образованных мусульман, говорящих на языке европейской модер- ности, но стремившихся дать ответы на вызовы, возникшие именно в контексте империи, в частности, на такой из них, как социальная мобильность мусульман. В данной статье, таким образом, предлагается рассмотреть проект Гасприн- ского с точки зрения проблемы интеграции мусульман в имперский социум. В ка- честве основного источника исследования использованы двуязычные материалы газеты «Переводчик-Терджиман» за 1883–1914 гг., которая являлась централь- ной информационной платформой для обсуждения «мусульманского вопроса» в Российской империи и до 1905 г. практически не имела конкурентов в лице дру- гих мусульманских периодических изданий. 4 Господин. «Мусульманский проект» Исмаила Гаспринского в имперском контексте Еще до начала издания газеты «Терджиман» Гаспринский в своей брошю- ре «Русское мусульманство: мысли, заметки, наблюдения мусульманина» (1881) предложил властям придерживаться системы управления многонациональным населением империи, основанной на стремлении «к единению нравственному, так сказать, к нравственной, духовной ассимиляции на принципах национальной индивидуальности, свободы и самоуправления» [8, c. 92]. Его предложение о «са- моуправлении», по всей видимости, отражало существовавшую политическую си- стему, в рамках которой «множество правовых режимов, легализованных внутри империи, одновременно утверждало верховную власть российского правления и по- зволяло населению в значительной степени управляться самим» [4, c. 402]. Гаспринский в целом мыслил свой «мусульманский проект» не в изоля- ции, а как часть имперской ситуации, регулярно ссылаясь на положение других этноконфессиональных групп, населявших империю. В качестве положительно- го примера управления Гаспринский приводил, в частности, Главное управление Армяно-григорианской церковью, указывая, к примеру, на то, что «Г.4 Католи- кос армян и члены духовного управления отличаются обширным духовным и светским образованием. Они одинаково хорошо понимают, что нужно для молитвы и для жизни народа» [9]. В подобных утверждениях подчеркивалась ISSN 2618-9569 608 Тихонова Н.Е. важная роль духовных правлений не только как религиозных институтов, но и как административных учреждений, ведающих внутренней жизнью населения. важная роль духовных правлений не только как религиозных институтов, но и как административных учреждений, ведающих внутренней жизнью населения. То, что Гаспринский указывал на наличие светского образования у членов армянского духовного правления, в целом было созвучно его представлению о важной административной функции духовенства в имперской системе управле- ния. В отношении духовных правлений мусульман в этой связи он, в частности, заявлял: «В Персии, Бухаре знание муфтием только духовных наук быть может достаточно; там он лицо духовное и судья духовный, но в России муфтий кроме того гражданский сановник и представитель мусульман перед правитель- ством и судом» [10]. Свою позицию Гаспринский подкреплял также примерами, когда высшую ступень в духовной иерархии (должность муфтия) занимало «лицо светское». «В 1878 году впервые раздался голос за избрание в муфтии лица со светским образованием. Через пять лет идея настолько окрепла уже, что в муфтии был избран ротмистр гвардии покойный князь Али-бей Хункалов. Несмо- тря на краткую службу, теперь нет в Крыму мусульманина, который бы не поми- нал его добром. О муфтии-мулле перестали думать даже сами муллы, поняв, что положение его обязывает быть просвещенным администратором» [11], – писал он в «Терджимане» в 1890 г. Интересно, что впоследствии Гаспринский упоминал Таврического муфтия А. Хункалова и Оренбургского муфтия С. Тевкелева (кото- рый являлся отставным офицером) в числе лиц, оказавших поддержку изданию «Терджимана» [12]. Подобная структура, когда во главе духовного правления стоит не «муфтий- мулла», а «муфтий-администратор», для Гаспринского и его единомышленников имела стратегическое значение. Она позволяла расширить возможности социаль- ной мобильности для той части мусульманского населения (в первую очередь, из числа привилегированных сословий), которая не имела доступа к управлению му- сульманским населением в отличие от «духовной касты» (термин Гаспринского). В этой связи Гаспринский до 1905 г. выступал за расширение круга лиц, допущенных к выборам Таврического муфтия, которого затем утверждал в дол- жности император, предлагая дополнить выборщиков из дворян, духовных лиц и старшин от сельского населения представителями купцов 1-й и 2-й гильдий, а также городскими и земскими гласными из числа мусульман [13]. В этой же связи ISSN 2618-9569 609 Minbar. Islamic Studies. 2022;15(3) Minbar. Islamic Studies. 2022;15(3) проводилась идея о необходимости замены пожизненного избрания кади-аске- ров5 и кадиев на пятилетний срок службы [13]. После 1905 г. подобные предложения трансформировались в требования всеобщих выборов муфтия на пятилетний срок с возможностью его смещения в случае неудовлетворения требованиям должности [14; 15]. В революционный период 1905–1907 гг. 5 Военные шариатские судьи. Тихонова Н.Е. Гаспринский и другие члены Всероссийского союза мусульман (Бутюн Русия мусульманларнын иттифакы) предлагали сохранить, но существенно реформировать духовные правления как институт власти, унифицировав их и передав контроль над ними из ведения госу- дарства в руки мусульманского населения, тем самым предоставив мусульманам «национально-культурную автономию» [16]. Параллельно с этим идея о всеоб- щем стремлении мусульман реформировать свои духовные правления системати- чески проводилась в этот период и в «Терджимане» [17; 18]. Гаспринский, в свою очередь, еще задолго до Первой русской революции выступал за унификацию деятельности существовавших духовных правлений (Оренбургского, Таврического и двух Закавказских), отмечая, в частности: «Еще более пользы принесла бы мусульманскому обществу согласная, однообразная де- ятельность всех наших духовных управлений. Если бы достопочтенные муф- тии Крыма, Оренбурга и Закавказья, при непременном участии г. шейх-уль-исляма, обдумав, обсудив ближайшие нужды своей паствы, обменялись бы мнениями друг с другом и затем сообща вели дело каждый в своем районе, придерживаясь, однако, об- щего принципа, или сообща возбуждали ходатайства, когда в том представлялась бы надобность, то деятельность их дала бы более солидные результаты, чем мы видели до сих пор» [19]. Исмаил Гаспринский подобными заявлениями транслировал идею о том, что наличие нескольких самостоятельных духовных правлений в Российской им- перии усложняло без того неравномерное управление мусульманами из разных регионов, имевших к тому же различия в правовом положении. К примеру, му- сульманское население Башкирии обладало уникальным правом коллективной собственности на землю [20], а туркестанские мусульмане, в отличие от мусуль- ман других регионов, не только не имели собственного духовного правления, но еще и подразделялись на «обычников» (киргизы) и «шариатников» (сарты), что подвергалось систематической критике в «Терджимане» [21]. ISSN 2618-9569 610 Тихонова Н.Е. Исмаил Гаспринский об интеграции мусульман в социально-политическое пространство Российской империи Исмаил Гаспринский об интеграции мусульман в социально-политическое пространство Российской империи <…> Имеющиеся сегодня у русских в России профессии, производство и разного рода методы, как и во всей Европе, были заимствованы у французов. <…> Для нас же обучение и путь к мастерству еще проще: если бы мы обучились существу- ющим профессиям, если бы перевели на татарский язык русские книги о ремеслах и ресурсах – этого было бы достаточно» [23, с. 14–15]6. «В первую очередь мы должны предоставить студентов тем школам, где обучают и преподают ремесло и производство, и вырастить мастеров. <…> для обучения бого- словию едут в Бухару, Стамбул или Египет, откуда вышли все наши улемы; для об- учения профессии и мастерству поступают в русские и европейские шко- лы. <…> Имеющиеся сегодня у русских в России профессии, производство и разного рода методы, как и во всей Европе, были заимствованы у французов. <…> Для нас же обучение и путь к мастерству еще проще: если бы мы обучились существу- ющим профессиям, если бы перевели на татарский язык русские книги о ремеслах и ресурсах – этого было бы достаточно» [23, с. 14–15]6. Идею Гаспринского о том, что просвещение мусульман и подготовка ло- кальных администраторов из их числа отвечает обоюдным интересам как мусуль- манского населения, так и имперских властей, убедительно резюмирует следую- щая цитата из «Терджимана»: «… а между тем, их [мусульман] личные интересы и пользы государственные должны бы вызывать заметный прирост просвещен- ных, культурных мусульман» [22]. «Мусульманское население нашего отечества одинаково нуждается как в подготовленных педагогах, так и в развитых переводчиках и чиновниках в разных отраслях местной администрации», – продолжал ту же мысль Гаспринский в другой статье, предлагая преобразовать государственные русско-татарские учи- тельские школы в сторону расширения их программы для подготовки из числа мусульман не только учителей, но и государственных служащих разного профиля [24]. Критикуя узкую специализацию этих школ, Гаспринский в то же время поднимал в своей газете вопрос о непропорционально большом числе выпускни- ков-мусульман с учительской специализацией относительно реального количест- ва вакантных позиций. «Некоторые из окончивших в этом году Симферопольскую татарскую учительскую школу молодых людей обратились к нам, справляясь, не известно ли нам, какие учительские ваканции среди мусульман ведомства Орен- бургского духовного правления, куда они могли бы быть принятыми учителями <…> Наше настоящее и тому подобное содействие, даже если поведет к какому-нибудь результату, но все же оно есть и останется случайным, помогая выбиться из труд- ного положения только некоторым», – указывал он в «Терджимане» [25]. Исмаил Гаспринский об интеграции мусульман в социально-политическое пространство Российской империи Исмаил Гаспринский об интеграции мусульман в социально-политическое пространство Российской империи Призывы Гаспринского к «единообразной деятельности» всех четырех ду- ховных правлений, таким образом, с одной стороны, предполагали рационали- зацию существовавшей имперской системы управления, а с другой, способство- вали реализации его «мусульманского проекта», нацеленного на консолидацию мусульман как отдельной группы имперских подданных. Так, согласно представлениям Гаспринского, мусульмане как особая группа должны были иметь администраторов из своего круга. При этом в русской части «Терджимана», ориентированной на широкую общеимперскую публику, в том числе на представителей официальных властей, подчеркивалось, что «в инте- ресах управления нашими мусульманскими областями было бы целесоо- бразно способствовать подготовке мусульман к служебной деятельности в местной администрации» [22]. При этом в параллельном тюркском тексте вышеуказанной статьи, ориен- тированной в большей степени на самих мусульман, указывалось, что несение го- сударственной службы является их законным правом и отвечает их интересам. «Если среди мусульман много знающих русский язык и изучивших [российские] законы и порядки, то государственная и чиновничья служба, без сомнения, это их право. <…> В настоящее время чиновники из числа мусульман присутст- вуют в разных отраслях. Однако, по одному или по два, то есть их совсем мало. <…> Ввиду того что от ремесленных наук и просвещения будет польза и им самим [мусульманам], и государству, этому вопросу необходимо уделить внима- ние», – говорилось в газете [22]. Как видно из приведенного примера, по-разному ставились акценты в рус- ском и тюркском текстах двуязычного «Терджимана», что отвечало представле- ниям соответствующей целевой аудитории (русских или мусульман). Если по-рус- ски говорилось об общегосударственных интересах и подтверждалась готовность мусульман интегрироваться в имперский социум, то в тюркском варианте акцент смещался на внутримусульманские интересы, открывавшиеся в случае их успеш- ной интеграции. Примечательно, что в 1889 г. Гаспринский выпустил по вопросу успешной модели интеграции в современном обществе специальную брошюру «Доходные и торговые войны» (Кясб ва тиджарат мухарабасе) на тюркском языке, в кото- рой он обосновывает необходимость получения мусульманами профильного об- разования и изучения русского и европейских языков для выживания в услови- ях капиталистической конкуренции [23]. В частности, в брошюре указывалось: 611 Minbar. Islamic Studies. 2022;15(3) «В первую очередь мы должны предоставить студентов тем школам, где обучают и преподают ремесло и производство, и вырастить мастеров. <…> для обучения бого- словию едут в Бухару, Стамбул или Египет, откуда вышли все наши улемы; для об- учения профессии и мастерству поступают в русские и европейские шко- лы. 6 Перевод автора статьи [Н.Т.]. Исмаил Гаспринский об интеграции мусульман в социально-политическое пространство Российской империи В качестве еще одного важного аспекта данной проблемы Гаспринский на- зывал неполноценность аттестатов этих школ, которые не предоставляли права 6 Перевод автора статьи [Н.Т.]. ISSN 2618-9569 ISSN 2618-9569 ISSN 2618-9569 612 7 Крымско-татарское звучание почетного мусульманского титула «Хаджи». Тихонова Н.Е. Исмаил Гаспринский об интеграции мусульман в социально-политическое пространство Российской империи выпускникам в дальнейшем поступать в вузы [25]. Гаспринский в этой связи отме- чал в другой своей статье, что расширение программы русско-татарских учитель- ских школ для приведения ее в соответствие с программой реальных гимназий позволило бы выпускникам продолжить обучение в университетах [24]. Тем са- мым доступ к высшему образованию как залог успешной интеграции мусульман открыто лоббировался в газете. «Терджиман» был также вовлечен в процесс распределения частных сти- пендий и благотворительных средств для материальной поддержки университет- ских студентов из числа мусульман. Более того, в газете публиковались объявле- ния о специальных стипендиях для мусульманок, как, например: «Землевладелец Феодосийского уезда Аджи7 Сулейман-ага Бейтуллаев предлагает нуждающимся мусульманкам две стипендии по 350 рублей каждая для прохождения медицинского факультета. Стипендиатки должны обязаться прослужить в Крыму по пяти лет» [26]. Таким образом, вопрос образования перекликался с «женским вопросом», направленным на социализацию женщин и их вовлечение в профессиональную деятельность. Кроме того, в газете Гаспринского вопрос получения высшего образования представлялся как залог успешной социальной мобильности, значительно огра- ниченной в сословном российском обществе, особенно для мусульман из непри- вилегированных слоев. «Из мусульман дворянского (бекского) сословия уже бывали окончившие университет, но еще не было примера, чтобы высшее образование получил татарин из других сословий. Счастливым первенцем в этом случае является дерекойский уроженец Ахмед-ага Бекиров, блистательно окончивший юридический факультет Новороссийского университета. Бекиров посвящает себя присяжной адвокатуре (Симферополь)», – отмечалось в «Терджимане» [27]. Важность доступа мусульман к высшему образованию демонстрировалась в газете также на примере собственной семьи издателя. В частности, в ней сообща- лось, что старший сын Гаспринского Рефат окончил Симферопольскую мужскую казенную гимназию, после чего поступил на юридический факультет (Казанского университета) [28]. Помимо высшего «светского» образования, Гаспринского занимал также вопрос реформирования высшей ступени религиозного образования мусульман (медресе). Так, при его непосредственном содействии была предпринята попытка реформирования бахчисарайского медресе «Зынджырлы», в программу которо- 7 Крымско-татарское звучание почетного мусульманского титула «Хаджи». 613 ISSN 2618-9569 Minbar. Islamic Studies. 2022;15(3) Minbar. Islamic Studies. 2022;15(3) го входили кроме богословских дисциплин также светские предметы [29]. Таким образом, это крупнейшее медресе Крыма могло отныне готовить «прогрессив- ных» духовных лиц, то есть потенциальных единомышленников Гаспринского. го входили кроме богословских дисциплин также светские предметы [29]. Таким образом, это крупнейшее медресе Крыма могло отныне готовить «прогрессив- ных» духовных лиц, то есть потенциальных единомышленников Гаспринского. Предлагая включение преподавания русского языка и правоведения в этом и других медресе Российской империи, Гаспринский, в том числе, выступал за подготовку квалифицированных, компетентных кадров для магометанских ду- ховных правлений. Тихонова Н.Е. Исмаил Гаспринский об интеграции мусульман в социально-политическое пространство Российской империи ном языке, обновление школьной программы, обеспечение прав мусульманских студентов и преподавателей и т. д. [32]. Тихонова Н.Е. «Почти 10 лет назад в брошюре нашей ("Русское мусульман- ство", 1881) мы предлагали проект высших медресе, где бы будущие духовники мусульман и вообще учащиеся приобретали не только религиозные познания, но проходили бы на родном языке элементарный курс общеобразовательных наук, из- учали бы русский язык и начала русского правоведения», – писал он по этому поводу в «Терджимане» [30]. Таким образом, до 1905 г. основное внимание газеты в контексте образова- ния было сосредоточено на таких вопросах, как реформирование мусульманских мектебов и медресе согласно «новому методу» и их популяризация, а также реор- ганизация государственных школ и училищ для мусульман с целью расширения их программы и доступа мусульман к высшему образованию. Но уже начиная с 1905 г. в «Терджимане» стала открыто отстаиваться идея образовательной автономии для мусульман, как представляется, ввиду следова- ния одному из ключевых требований III Всероссийского мусульманского съезда, проведенного в августе 1906 г. в Нижнем Новгороде [16]. В этом ключе в «Тер- джимане», в частности, критике подвергалась передача мусульманских школ из ведомства Оренбургского магометанского духовного собрания под управление Министерства народного просвещения в 1870-х гг. «Конфессиональные мусуль- манские школы, бывшие в заведовании Оренбургского магометанского духовного со- брания, были взяты в ведомство министерства народного просвещения. И за целое 30-летие этого ведения для этих школ ровно ничего не сделано, кроме того, что мусульманское население было запугано и раздражено», – отмечалось в этой связи в газете [31]. Кроме того, в новых социально-политических условиях после 1905 г. Гас- принский стал выступать за необходимость унификации образовательной си- стемы для всех российских мусульман. С этой целью в «Терджимане» подчерки- валось, в частности, что ходатайства мусульман из разных регионов касательно образования заключали близкие по содержанию требования: образование на род- 614 ISSN 2618-9569 ISSN 2618-9569 ISSN 2618-9569 Заключение В пореформенный период 1880–1890-х гг. «мусульманский проект» Гас- принского можно охарактеризовать как стремление обеспечить условия для луч- шей интеграции консолидированного мусульманского сообщества в имперское социально-политическое пространство. Важно отметить, что Гаспринский в своем проекте апеллировал к импер- ским категориям и стремился, с одной стороны, донести до единоверцев откры- вавшиеся социально-политические возможности модернизирующейся империи, а с другой, транслировать для официальных властей позицию о готовности му- сульман интегрироваться. В этой связи можно утверждать, что в газете «Терджиман», являвшейся важной информационной платформой по обсуждению «мусульманского вопро- са» в Российской империи, присутствовали как минимум две дискурсивные стра- тегии, ориентированные на разные языковые аудитории. Примечательно также, что Гаспринский в «Терджимане» призывал не к упразднению, а к преобразованию и реструктуризации магометанских духовных правлений и различных образовательных учреждений (таких как русско-татар- ские учительские школы), то есть именно тех институтов, которые легитимирова- ли существование империи. В контексте проекта Гаспринского реформирование духовных правлений и предложения по их унификации становятся важным фактором, гарантирующим внутреннюю консолидацию мусульман как отдельной группы имперских поддан- ных. При этом предложения расширить состав магометанских духовных правле- ний за счет администраторов из числа светских лиц указывают на внутримусуль- манский «запрос» (в первую очередь, среди мусульман из привилегированных сословий, не имеющих религиозного образования), нацеленный на расширение их карьерных возможностей в подобных имперских управленческих институтах. Проблема интеграции мусульман на страницах «Терджимана» нашла, по- жалуй, наиболее полное освещение в вопросах образования. Высшее образова- ние, в частности, представлялось ключевым фактором социальной мобильности мусульман. Таким образом, выходя за рамки дискурса о «новометодном» обуче- ISSN 2618-9569 615 Minbar. Islamic Studies. 2022;15(3) нии, можно заметить, что просветительская деятельность Гаспринского имела под собой совершенно конкретные практические цели. После революции 1905 г. «мусульманский проект» Гаспринского последо- вательно трансформировался в требования о предоставлении мусульманам «на- ционально-культурной автономии». Но даже в новых социально-политических условиях мусульманские лидеры, включая Гаспринского, предлагали в значи- тельно реформированном и унифицированном виде сохранить такой имперский институт, как духовное правление. Вопрос мусульманской «национально-куль- турной автономии» подразумевал, в частности, образовательную автономию. Многие предложения мусульман в этой связи носили кардинальный характер, но в целом последовательно продолжали те идеи, с которыми Гаспринский высту- пал в своей активной просветительской и реформаторской деятельности с начала 1880-х гг. 10. Ответ газете «Зия». Переводчик-Терджиман. 1883. 12 октября. Тихонова Н.Е. Исмаил Гаспринский об интеграции мусульман в социально-политическое пространство Российской империи Исмаил Гаспринский об интеграции мусульман в социально-политическое пространство Российской импери 11. Газета «Крым». Переводчик-Терджиман. 1890. 11 марта. 11. Газета «Крым». Переводчик-Терджиман. 1890. 11 марта. 12. От редакции. Переводчик-Терджиман. 1893. 25 февраля. 12. От редакции. Переводчик-Терджиман. 1893. 25 февраля. 13. Важная инициатива. Переводчик-Терджиман. 1883. 8 мая. 13. Важная инициатива. Переводчик-Терджиман. 1883. 8 мая 14. Крымско-мусульманское собрание. Переводчик-Терджиман. 1905. 25 ноября. 14. Крымско-мусульманское собрание. Переводчик-Терджиман. 1905. ноября. 15. Записка казанских мусульман. Переводчик-Терджиман. 1905. 15 марта 16. III Всероссийский мусульманский съезд. Казань: Издательство Харитоно- ва; 1906. 16 с. 16. III Всероссийский мусульманский съезд. Казань: Издательство Харитоно- ва; 1906. 16 с. 17. Мусульманский митинг. Переводчик-Терджиман. 1905. 2 ноября. 17. Мусульманский митинг. Переводчик-Терджиман. 1905. 2 ноября. 18. Крымско-мусульманское собрание. Переводчик-Терджиман. 1905. 23 ноября. 18. Крымско-мусульманское собрание. Переводчик-Терджиман. 1905. 23 ноября. 19. Тифлисские газеты сообщают… Переводчик-Терджиман. 1888. 4 ноября. 20 Steinwedel Ch Threads of empire Loyalty and Tsarist authority in Bashkiria 19. Тифлисские газеты сообщают… Переводчик-Терджиман. 1888. 4 ноября. 20. Steinwedel Ch. Threads of empire. Loyalty and Tsarist authority in Bashkiria, 1552-1917. Bloomington: Indiana University Press; 2016. 383 p. 20. Steinwedel Ch. Threads of empire. Loyalty and Tsarist authority in Bashkiria, 1552-1917. Bloomington: Indiana University Press; 2016. 383 p. 21. Свобода и Туркестанский край. Переводчик-Терджиман. 1905. 7 ноября. 22. Мусульмане-чиновники. Переводчик-Терджиман. 1888. 11 октября. 23. Гаспринский И. Кясб ва тиджарат мухарабасе. Бахчисарай: Матба‘а-и Тарджуман; 1889. 16 с. 24. Русско-мусульманский институт. Переводчик-Терджиман. 1884. 20 ноября. 24. Русско-мусульманский институт. Переводчик-Терджиман. 1884. 20 ноября. 25. Об окончивших Симф. татар. учит. школу. Переводчик-Терджиман. 1904. 9 июля. 25. Об окончивших Симф. татар. учит. школу. Переводчик-Терджиман. 1904. 9 июля. 26. Две стипендии. Терджиман. 1913. 7 июля. 26. Две стипендии. Терджиман. 1913. 7 июля. 26. Две стипендии. Терджиман. 1913. 7 июля. 27. Ахмед-ага Бекиров. Переводчик-Терджиман. 1903. 22 декабря. 28. Разные вести. Переводчик-Терджиман. 1904. 1 июня. 28. Разные вести. Переводчик-Терджиман. 1904. 1 июня. 29. Медресе Зынджырлы и его порядки. Переводчик-Терджиман. 1890. 6 ноября. 29. Медресе Зынджырлы и его порядки. Переводчик-Терджиман. 1890. 6 ноября. 30. Уничтожение тунеядства. Переводчик-Терджиман. 1890. 7 декабря. 30. Уничтожение тунеядства. Переводчик-Терджиман. 1890. 7 декабря. 31. Важное время. Переводчик-Терджиман. 1905. 25 марта. 31. Важное время. Переводчик-Терджиман. 1905. 25 марта. 32. Крымская депутация в С.-Петербург. Переводчик-Терджиман. 1905. 27 мая; 31 мая; 3 июня; 7 июня. 32. Крымская депутация в С.-Петербург. Переводчик-Терджиман. 1905. 27 мая; 31 мая; 3 июня; 7 июня. 1. Chto nam nuzhno? [What do we need?]. Perevodchik-Terjiman. 1883. September 23. (In Russian and common Turkic) Литература 1. Что нам нужно? Переводчик-Терджиман. 1883. 23 сентября. 1. Что нам нужно? Переводчик-Терджиман. 1883. 23 сентября. 2. Kirmse S. The Lawful Empire. Legal change and imperial diversity in late Tsarist Russia. Cambridge: Cambridge University Press; 2019. 341 p. 2. Kirmse S. The Lawful Empire. Legal change and imperial diversity in late Tsarist Russia. Cambridge: Cambridge University Press; 2019. 341 p. 3. Новая имперская история Северной Евразии. Ч. 2. Герасимов И. (ред.). Ка- зань: Ab Imperio; 2017. 630 c. 3. Новая имперская история Северной Евразии. Ч. 2. Герасимов И. (ред.). Ка- зань: Ab Imperio; 2017. 630 c. 4. Burbank J. An Imperial Rights Regime: Law and Citizenship in the Russian Empire. Kritika: Explorations in Russian and Eurasian History. 2017;(7–3):397–431. 4. Burbank J. An Imperial Rights Regime: Law and Citizenship in the Russian Empire. Kritika: Explorations in Russian and Eurasian History. 2017;(7–3):397–431. 5. Тихонова Н. Роль газеты «Терджиман» в процессе модернизации россий- ских тюрок-мусульман на рубеже XIX-XX вв. Научная мысль Кавказа. 2019;1:42–47. 5. Тихонова Н. Роль газеты «Терджиман» в процессе модернизации россий- ских тюрок-мусульман на рубеже XIX-XX вв. Научная мысль Кавказа. 2019;1:42–47. 6. Lazzerini E. Ismail Gasprinskii’s Perevodchik/Tercüman: a clarion of modernizm. Central Asian Monuments. Paksoy H.B. (ed.). Istanbul: Isis Press; 1992, pp. 143–156. 6. Lazzerini E. Ismail Gasprinskii’s Perevodchik/Tercüman: a clarion of modernizm. Central Asian Monuments. Paksoy H.B. (ed.). Istanbul: Isis Press; 1992, pp. 143–156. 7. Tuna M. Imperial Russia’s Muslims: Islam, Empire and European Modernity, 1788-1914. Cambridge: Cambridge University Press; 2015. 276 p. 7. Tuna M. Imperial Russia’s Muslims: Islam, Empire and European Modernity, 1788-1914. Cambridge: Cambridge University Press; 2015. 276 p. 8. Гаспринский И. Русское мусульманство. Мысли, заметки, наблюдения мусульманина. Гаспринский И. Полное собрание сочинений. Т. 2. Казань-Симфе- рополь: Институт истории им. Ш. Марджани АН РТ; 2017. С. 82–111. 8. Гаспринский И. Русское мусульманство. Мысли, заметки, наблюдения мусульманина. Гаспринский И. Полное собрание сочинений. Т. 2. Казань-Симфе- рополь: Институт истории им. Ш. Марджани АН РТ; 2017. С. 82–111. 9. Сегодня мы намерены сказать два слова… Переводчик-Терджиман. 1888. 15 октября. 9. Сегодня мы намерены сказать два слова… Переводчик-Терджиман. 1888. 15 октября. ISSN 2618-9569 616 Тихонова Н.Е. Minbar. Islamic Studies. 2022;15(3) 2. Kirmse S. The Lawful Empire. Legal change and imperial diversity in late Tsarist Russia. Cambridge: Cambridge University Press; 2019. 341 p. 2. Kirmse S. The Lawful Empire. Legal change and imperial diversity in late Tsarist Russia. Cambridge: Cambridge University Press; 2019. 341 p. 3. Novaya imperskaya istoriya Severnoy Evrasii [New Imperial History of the Northern Eurasia]. Part 2. Gerasimov I. (еd.). Kazan: Ab Imperio; 2017. 630 p. (In Russian) 3. Novaya imperskaya istoriya Severnoy Evrasii [New Imperial History of the Northern Eurasia]. Part 2. Gerasimov I. (еd.). Kazan: Ab Imperio; 2017. 630 p. (In Russian) 4. Burbank J. An Imperial Rights Regime: Law and Citizenship in the Russian Empire. Kritika: Explorations in Russian and Eurasian History. 2017;(7–3):397–431. 4. Burbank J. An Imperial Rights Regime: Law and Citizenship in the Russian Empire. Kritika: Explorations in Russian and Eurasian History. 2017;(7–3):397–431. 5. Tikhonova N. Rol’ gazety “Terjiman” v protsesse modernizatsii rossiyskikh tyurok-musulman na rubezhe XIX–XX vv. [The role of the “Terjiman” newspaper in the process of modernization of Russian Muslim Turks at the turn of 20th century]. Nauchnaya mysl’ Kavkaza [Scientifi c thought of the Caucasus]. 2019;1:42–47. (In Russian) 6. Lazzerini E. Ismail Gasprinskii’s Perevodchik/Tercüman: a clarion of modernizm. Central Asian Monuments. Paksoy H.B. (ed.). Istanbul: Isis Press; 1992, pp. 143–156. 7. Tuna M. Imperial Russia’s Muslims: Islam, Empire and European Modernity, 1788–1914. Cambridge: Cambridge University Press; 2015. 276 p. 8. Gasprinskii I. Russkoye musul’manstvo. Mysli, zametki, nablyudeniya musul’manina. [Russian Mohammedanism: Thoughts, Notes, Observations of a Muslim]. Gasprinskii I. Polnoye sobraniye sochineniy [Complete set of I. Gasprinskii’s works]. Vol. 2. Kazan-Simferopol’: Sh. Marjani Institute of History; 2017, pp. 82–111. (In Russian) 9. Segodnya my nemereny skazat’ dva slova… [Today we are going to say a few words…]. Perevodchik-Terjiman [Translator]. 1888. 15 October. (In Russian and common Turkic) 9. Segodnya my nemereny skazat’ dva slova… [Today we are going to say a few words…]. Perevodchik-Terjiman [Translator]. 1888. 15 October. (In Russian and common Turkic) 10. Otvet gazete “Ziya” [A response to “Dhiya” newspaper]. Perevodchik-Terjiman. 1883 October 12 (In Russian and common Turkic) 10. Otvet gazete “Ziya” [A response to “Dhiya” newspaper]. Perevodchik-Terjiman. 1883. October 12. (In Russian and common Turkic) 10. Otvet gazete “Ziya” [A response to “Dhiya” newspaper]. Perevodchik-Terjiman. 1883. October 12. (In Russian and common Turkic) 11. Gazeta “Krym” [The “Krym” (“Crimea”) newspaper]. Perevodchik-Terjiman. 11. Gazeta “Krym” [The “Krym” (“Crimea”) newspaper]. Perevodchik-Terjiman. 1890. March 11. Minbar. Islamic Studies. 2022;15(3) references 1. Chto nam nuzhno? [What do we need?]. Perevodchik-Terjiman. 1883. September 23. (In Russian and common Turkic) ISSN 2618-9569 617 617 ISSN 2618-9569 Minbar. Islamic Studies. 2022;15(3) Minbar. Islamic Studies. 2022;15(3) Тихонова Н.Е. Исмаил Гаспринский об интеграции мусульман в социально-политическое пространство Российской империи 14. Krymsko-musul’manskoye sobraniye [Crimean Muslim gathering]. Perevodchik-Terjiman [Translator]. 1905. November 25. (In Russian and common Turkic) 14. Krymsko-musul’manskoye sobraniye [Crimean Muslim gathering]. Perevodchik-Terjiman [Translator]. 1905. November 25. (In Russian and common Turkic) 15. Zapiska kazanskikh musul’man [A letter from Kazan Muslims]. Perevodchik- Terjiman. 1905. March 15. (In Russian and common Turkic) 15. Zapiska kazanskikh musul’man [A letter from Kazan Muslims]. Perevodchik- Terjiman. 1905. March 15. (In Russian and common Turkic) 16. III Vserossiyskii musul’manskii s’ezd [The Third All-Russian Muslim Congress]. Kazan: Kharitonov Publishing; 1906. 16 p. (In Russian) 16. III Vserossiyskii musul’manskii s’ezd [The Third All-Russian Muslim Congress]. Kazan: Kharitonov Publishing; 1906. 16 p. (In Russian) Kazan: Kharitonov Publishing; 1906. 16 p. (In Russian) 17. Musul’manskii miting [Muslim meeting]. Perevodchik-Terjiman. 1905. November 2. (In Russian and common Turkic) 17. Musul’manskii miting [Muslim meeting]. Perevodchik-Terjiman. 1905. November 2. (In Russian and common Turkic) 18. Krymsko-musul’manskoye sobraniye [Crimean Muslim gathering]. Perevodchik-Terjiman. 1905. November 23. (In Russian and common Turkic) 18. Krymsko-musul’manskoye sobraniye [Crimean Muslim gathering]. Perevodchik-Terjiman. 1905. November 23. (In Russian and common Turkic) 19. Tifl isskiye gazety soobshchayut… [Tbilisi newspapers report…]. Perevodchik- Terjiman. 1888. November 4. (In Russian and common Turkic) 19. Tifl isskiye gazety soobshchayut… [Tbilisi newspapers report…]. Perevodchik- Terjiman. 1888. November 4. (In Russian and common Turkic) 20. Steinwedel Ch. Threads of empire. Loyalty and Tsarist authority in Bashkiria, 1552–1917. Bloomington: Indiana University Press; 2016. 383 p. f p y y y 1552–1917. Bloomington: Indiana University Press; 2016. 383 p. 21. Svoboda i Turkestanskiy kray [The Freedom and Turkestan District]. Perevodchik-Terjiman. 1905. November 7. (In Russian and common Turkic) 21. Svoboda i Turkestanskiy kray [The Freedom and Turkestan District]. Perevodchik-Terjiman. 1905. November 7. (In Russian and common Turkic) 22. Musul’mane-Chinovniki [Muslim civil servants]. Perevodchik-Terjiman. 1888. 22. Musul’mane-Chinovniki [Muslim civil servants]. Perevodchik-Terjiman. 1888. October 11 (In Russian and common Turkic) 22. Musul’mane-Chinovniki [Muslim civil servants]. Perevodchik-Terjiman. 1888. October 11. (In Russian and common Turkic) October 11. (In Russian and common Turkic) 23. Gasprinskii I. Kasb wa tij arat muharabasi [Craft and Trade wars]. Bakhchysarai: Matba‘at-i Tarjuman; 1889. 16 p. (In common Turkic) 23. Gasprinskii I. Kasb wa tij arat muharabasi [Craft and Trade wars]. Bakhchysarai: Matba‘at-i Tarjuman; 1889. 16 p. (In common Turkic) Matba‘at-i Tarjuman; 1889. 16 p. (In common Turkic) 24. Russko-musul’manskii institut [Russian-Muslim institute]. Perevodchik- Terjiman. 1884. November 20. (In Russian and common Turkic) 24. Minbar. Islamic Studies. 2022;15(3) (In Russian and common Turkic) 11. Gazeta “Krym” [The “Krym” (“Crimea”) newspaper]. Perevodchik-Terjiman. 1890 March 11 (In Russian and common Turkic) 11. Gazeta “Krym” [The “Krym” (“Crimea”) newspaper]. Perevodchik-Terjiman. . March 11. (In Russian and common Turkic) 1890. March 11. (In Russian and common Turkic) 12. Ot redaktsii [From the editors]. Perevodchik-Terjiman. 1893. February 25. (In Russian and common Turkic) 13. Vazhnaya initsiativa [An important enterprise]. Perevodchik-Terjiman. 1883. May 8. (In Russian and common Turkic) 13. Vazhnaya initsiativa [An important enterprise]. Perevodchik-Terjiman. 1883. May 8. (In Russian and common Turkic) ISSN 2618-9569 618 Тихонова Н.Е. Информация об авторе About the author Nadezhda E. Tikhonova, Cand. Sci. (History), Research Fellow in the Centre for Historical Research of the National Research University «Higher School of Economics» (HSE University), Saint- Petersburg, the Russian Federation. About the author Nadezhda E. Tikhonova, Cand. Sci. (History), Research Fellow in the Centre for Historical Research of the National Research University «Higher School of Economics» (HSE University), Saint- Petersburg, the Russian Federation. Тихонова Надежда Евгеньевна, канди- дат исторических наук, научный сотруд- ник Центра исторических исследований Национального исследовательского университета «Высшая школа экономи- ки» (НИУ ВШЭ), г. Санкт-Петербург, Российская Федерация. Раскрытие информации о конфликте интересов The author declares that there is no confl ict of interest. Автор заявляет об отсутствии конфлик- та интересов. Тихонова Н.Е. Russko-musul’manskii institut [Russian-Muslim institute]. Perevodchik- Terjiman. 1884. November 20. (In Russian and common Turkic) 25. Ob okonchivshykh Simf. Tat. Uchit. Shkolu [On graduates of the Simferopol Tatar Teacher’s School]. Perevodchik-Terjiman. 1904. July 9. (In Russian and common Turkic) 25. Ob okonchivshykh Simf. Tat. Uchit. Shkolu [On graduates of the Simferopol Tatar Teacher’s School]. Perevodchik-Terjiman. 1904. July 9. (In Russian and common Turkic) 26. Dve stipendii [Two scholarships]. Terjiman. 1913. July 7. (In Russian) 27. Ahmed-aga Bekirov. Perevodchik-Terjiman. 1903. December 22. (In Russian and common Turkic) 27. Ahmed-aga Bekirov. Perevodchik-Terjiman. 1903. December 22. (In Russian and common Turkic) 28. Raznye vesti [Various news]. Perevodchik-Terjiman. 1904. June 1. (In Russian and common Turkic) 28. Raznye vesti [Various news]. Perevodchik-Terjiman. 1904. June 1. (In Russian and common Turkic) 29. Medrese Zyndzhyrly i ego poryadki [Zinjirli Madrasa and its rules]. Perevodchik-Terjiman. 1890. November 6. (In Russian and common Turkic) 29. Medrese Zyndzhyrly i ego poryadki [Zinjirli Madrasa and its rules]. Perevodchik-Terjiman. 1890. November 6. (In Russian and common Turkic) 30. Unichtozheniye tuneyadstva [Elimination of social parasitism]. Perevodchik- Terjiman. 1890. December 7. (In Russian and common Turkic) 30. Unichtozheniye tuneyadstva [Elimination of social parasitism]. Perevodchik- Terjiman. 1890. December 7. (In Russian and common Turkic) ISSN 2618-9569 619 ISSN 2618-9569 619 619 ISSN 2618-9569 Minbar. Islamic Studies. 2022;15(3) 31. Vazhnoye vremya [An important time-period]. Perevodchik-Terjiman 31. Vazhnoye vremya [An important time-period]. Perevodchik-Terjiman. 1905. March 25. (In Russian and common Turkic) arch 25. (In Russian and common Turkic) March 25. (In Russian and common Turkic) 32. Krymskaya deputatsiya v Sankt-Peterburg [Crimean delegation to Saint- Petersburg]. Perevodchik-Terjiman. 1905. May 27; May 31; June 3; June 7. (In Russian and common Turkic) 32. Krymskaya deputatsiya v Sankt-Peterburg [Crimean delegation to Saint- Petersburg]. Perevodchik-Terjiman. 1905. May 27; May 31; June 3; June 7. (In Russian and common Turkic) ISSN 2618-9569 Информация о статье Поступила в редакцию: 03 июля 2022 Одобрена рецензентами: 04 августа 2022 Принята к публикации: 04 сентября 2022 620
https://openalex.org/W2806555150
https://www.isprs-ann-photogramm-remote-sens-spatial-inf-sci.net/IV-2/17/2018/isprs-annals-IV-2-17-2018.pdf
English
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HIGH SPEED VIDEOMETRIC MONITORING OF ROCK BREAKAGE
ISPRS annals of the photogrammetry, remote sensing and spatial information sciences
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cc-by
7,482
1. INTRODUCTION to define and a discussion on how each test compares to the criteria set for the review. Within the range of testing options, a very common technique to determine the rock breakage characteristics is the drop weight test. As the name suggests, a heavy weight or driven hammer is used to fracture the rock sample. Mining of natural resources has been a key financial contributor to the economies of countries that have large reserves of minerals and ores. With finite quantities of these natural resources, compounded with increased competition by various multi-national mining companies, there is pressure to improve the efficiency of the mining process, thus increasing production and minimising costs. One significant cost in the mining of minerals and ores is the energy cost to break rocks down to a size where the metal or compound can be separated. The process of breaking down rock particles to smaller fragments is commonly referred to as comminution. Zhang and Zhao (2013) also discusses various tests to understand different rock mechanics behaviour. This paper provides a detailed description of each testing process, the parameters estimated and how each type of test has evolved. The paper highlights the extensive use of high speed photography systems for quantitative purposes and proposes that these systems should be investigated further to better understand rock fragmentation behaviour. The characterisation of comminution tests is crucial for accurate determination of rock breakage characteristics. Analysis of the comminution tests will assist in the optimisation of various industrial and mining processes, such as rock crushing machinery and rock blasting technologies. Most comminution tests are focussed predominantly on determining how various input energies and forces transfer through to rock breakage characteristics. A primary indicator are the size and velocity distributions of rock particles from the breakage, known as progeny. A common focus in comminution analysis is the segmentation of the resulting particulate matter and the creation of an optimal size distribution for the next stage of processing (Bearman et al., 1997; Fandrich et al., 1998; Jemwa and Aldrich, 2012; Mwanga et al., 2015; Noy, 2013; Sanchidrián et al., 2008; Zhang and Zhao, 2013). Active stereo photogrammetric and laser scanning systems have been successfully used to automate the process of estimating particle size distributions of ore piles travelling on a conveyor belt. ISPRS Annals of the Photogrammetry, Remote Sensing and Spatial Information Sciences, Volume IV-2, 2018 ISPRS TC II Mid-term Symposium “Towards Photogrammetry 2020”, 4–7 June 2018, Riva del Garda, Italy ISPRS Annals of the Photogrammetry, Remote Sensing and Spatial Information Sciences, Volume IV-2, 2018 ISPRS TC II Mid-term Symposium “Towards Photogrammetry 2020”, 4–7 June 2018, Riva del Garda, Italy HIGH SPEED VIDEOMETRIC MONITORING OF ROCK BREAKAGE J. Allemand1, M. R. Shortis2* and M. K. Elmouttie3 1 Institute of Geodesy and Photogrammetry, ETH Zurich, Zurich, Switzerland - jon_allemand@live.com 2 School of Science, RMIT University, GPO Box 2476, Melbourne, Victoria 3001, Australia - mark.shortis@rmit.edu.au 3 CSIRO Energy, PO Box 883, Kenmore, Queensland 4069, Australia - marc.elmouttie@csiro.au Commission II, WG II/5 KEY WORDS: Rock breakage, Comminution, High speed video, Stereo-photogrammetry ABSTRACT: Estimation of rock breakage characteristics plays an important role in optimising various industrial and mining processes used for rock comminution. Although little research has been undertaken into 3D photogrammetric measurement of the progeny kinematics, there is promising potential to improve the efficacy of rock breakage characterisation. In this study, the observation of progeny kinematics was conducted using a high speed, stereo videometric system based on laboratory experiments with a drop weight impact testing system. By manually tracking individual progeny through the captured video sequences, observed progeny coordinates can be used to determine 3D trajectories and velocities, supporting the idea that high speed video can be used for rock breakage characterisation purposes. An analysis of the results showed that the high speed videometric system successfully observed progeny trajectories and showed clear projection of the progeny away from the impact location. Velocities of the progeny could also be determined based on the trajectories and the video frame rate. These results were obtained despite the limitations of the photogrammetric system and experiment processes observed in this study. Accordingly there is sufficient evidence to conclude that high speed videometric systems are capable of observing progeny kinematics from drop weight impact tests. With further optimisation of the systems and processes used, there is potential for improving the efficacy of rock breakage characterisation from measurements with high speed videometric systems. * Corresponding author. This contribution has been peer-reviewed. The double-blind peer-review was conducted on the basis of the full paper. https://doi.org/10.5194/isprs-annals-IV-2-17-2018 | © Authors 2018. CC BY 4.0 License. 2.2 Capture, Processing, Photogrammetric and Modeling Software The use of photogrammetry systems is well proven for measuring static or dynamic particulate matter. Maas and Gruen (1995) presents a multi-camera system and a least squares matching method for 3D particle tracking velocimetry. Spreafico et al. (2017) analysed the deposition from rock bridge fractures using low altitude photography from a drone. More closely related to comminution tests, Kim et al. (2015) utilises a combination of 2D and 3D photogrammetric techniques along with simulations to achieve consistent results for determining coefficients associated with rock fall trajectories down a slope. Finally, there are instances where comminution tests have been undertaken using high speed photography to make 2D measurements of dynamic fragmentation events (Ma et al., 2011; Shuaeib et al., 2004). StreamPix is a software package developed by NorPix for the acquisition and control of multiple cameras (NorPix, 2018). This software was used to capture the synchronised pairs of videos from the IDS system. The videos are recorded directly to the SSDs without decoding the Bayer pattern to ensure all frames are recorded within the available band width of the interfaces. StreamPix captures the videos in a native file format which is then exported to an uncompressed AVI format. The Bayer pattern is decoded within the software to enable the AVI video to be recorded and viewed in colour. To record a set of videos, the physical pulse trigger button is pressed to start the live feed of the cameras to the PC. The software, based on predetermined settings, then begins synchronous data recording once record is pressed within the software. The same button is then pressed to stop the recording. The review of the current literature has identified that there is considerable potential in the use of photogrammetry to better understand rock breakage characterisation. Accordingly, research was conducted for an honours level project (Allemand, 2016) to test the use of a high speed videometric system for 3D analysis of drop weight tests, with the aim to observe progeny kinematics. Xvid is a free and open-source video codec that can be used for high quality compression of video (Xvid, 2018). The uncompressed AVI files output by StreamPix, particularly of the calibration process, were deemed too large to manage efficiently and so Xvid was used for the compression of the files. The highest quality setting was used to minimise the impact of compression artefacts. 1. INTRODUCTION These techniques have the potential benefit of reducing the power intensive, mechanical systems currently used to estimate particle distributions (Jemwa and Aldrich, 2012; Noy, 2013). There are a variety of comminution tests currently utilised to determine the particle characteristics for different types of rock (Bearman etal., 1997; Mwanga, et al., 2015; Zhang and Zhao 2013). Mwanga et al. (2015) provides a thorough analysis of the current methods by comparing them against set criteria for a geo-metallurgical testing program to determine the efficiency and quality of the tests. The review provides an overview of each of the tests, the rock characteristics for which they are used A fundamental understanding of different rock parameters and characteristics related to the comminution of rocks is essential in order to optimise processing machinery, minimise power consumption for desired particle sizes and in turn reduce costs. his contribution has been peer-reviewed. The double-blind peer-review was conducted on the basis of the full paper. https://doi.org/10.5194/isprs-annals-IV-2-17-2018 | © Authors 2018. CC BY 4.0 License. 17 ISPRS Annals of the Photogrammetry, Remote Sensing and Spatial Information Sciences, Volume IV-2, 2018 ISPRS TC II Mid-term Symposium “Towards Photogrammetry 2020”, 4–7 June 2018, Riva del Garda, Italy ISPRS Annals of the Photogrammetry, Remote Sensing and Spatial Information Sciences, Volume IV-2, 2018 ISPRS TC II Mid-term Symposium “Towards Photogrammetry 2020”, 4–7 June 2018, Riva del Garda, Italy The main outcome of drop weight testing for comminution purposes is estimation of likely particle size distributions (Bearman et al., 1997). The development of an automated measurement of particle distributions with a high-speed 3D photogrammetric system of the tests can reduce the time and labour required to estimate the rock breakage characterisation compared to using traditional techniques. The cameras are synchronised using a hard wired trigger pulse. Test videos taken of bouncing balls and preliminary drop weight tests indicated that there was no discernible delay between the captured pairs of frames and there would be no significant systematic errors incurred in the particle tracking. The cameras are synchronised using a hard wired trigger pulse. Test videos taken of bouncing balls and preliminary drop weight tests indicated that there was no discernible delay between the captured pairs of frames and there would be no significant systematic errors incurred in the particle tracking. 2.2 Capture, Processing, Photogrammetric and Modeling Software This contribution has been peer-reviewed. The double-blind peer-review was conducted on the basis of the full paper. https://doi.org/10.5194/isprs-annals-IV-2-17-2018 | © Authors 2018. CC BY 4.0 License. ISPRS Annals of the Photogrammetry, Remote Sensing and Spatial Information Sciences, Volume IV-2, 2018 ISPRS TC II Mid-term Symposium “Towards Photogrammetry 2020”, 4–7 June 2018, Riva del Garda, Italy ISPRS Annals of the Photogrammetry, Remote Sensing and Spatial Information Sciences, Volume IV-2, 2018 ISPRS TC II Mid-term Symposium “Towards Photogrammetry 2020”, 4–7 June 2018, Riva del Garda, Italy As the only access in and out of the test machine was via the hinged front panel, the cameras had to be placed at a sufficient distance away to ensure each sample could be placed within the closure and the aligned with the hammer without disturbing the cameras. The fibre optic lights were placed on a support with the prongs bent such that the device could be moved out of the way to enable ready access into the impact test machine but allow replicate conditions and reduce the time required to reset between tests. 3.1 Experiment Design The comminution experiments involved placing a steel anvil and the sample at the base of the test machine, onto which a 20kg flat hammer head would strike the sample. This was enclosed within the protective barrier with a matte black card placed at the back of the enclosure to ensure the fragmented particles had sufficient contrast against other objects within the case (see Figure 2). The experiments used core samples of sandstone rock that were approximately 60mm in diameter and ranged in width from 20mm to 35mm. Figure 3. Fields of view for the two cameras. 2.3 Impact Testing Facility The Instron Dynatup 9250g machine (see Figure 2) is located at the CSIRO Rock Cutting Laboratory, Queensland Centre of Advanced Technologies and is designed for impact testing of various materials. It is similar in design to impact testing facilities utilised by the JKTech Laboratory Services for their proprietary JK Drop Weight Testing which provides industry with sample ore breakage characteristics. It is fully computer controlled, including data capture during the impact event. It has a maximum drop height of 1.25m and weight of 80.5kg which allows for a maximum input energy of 1010 Joules at a maximum velocity of 5.0m/s. It is housed within a clear protective casing with a guided hammer and anvil, which supports observing the particle kinematics from rock comminution. The test section inside the barrier casing is approximately 500mm by 500mm by 100mm, but the useable volume and visibility is limited by the hammer support structure and cables. The lighting arrangement was sufficient to allow acceptable exposures at a rate of 390 frames per second. At this frame rate the resolution of the cameras is reduced to 640 by 480 pixels, but the small field of view required for the test sample compensated for the loss of resolution. The faster frame rate ensured that very rapid particle motion could be captured. The two cameras were set up in a classic stereo configuration in front of the drop weight test machine, making use of a rigid base bar mounted on a heavy duty tripod to ensure stability (see Figure 1). The cameras were fixed onto the base bar with bolts and the lenses were taped to ensure a consistent relative orientation and camera calibrations. The fields of view of the cameras are shown in Figure 3. Figure 2. Impact testing machine, sample and lighting set up. The base bar was levelled to provide an approximate vertical reference. However line of sight restrictions caused by components of the test machine required the cameras to view the sample at an oblique angle from above (see Figure 5) and limited the base separation to 350mm. To obtain the field of view shown in Figure 3, the range between the cameras and the test object was set at 1600mm, resulting in a base to distance ratio of 1 to 4.6. Figure 2. Impact testing machine, sample and lighting set up. 3. EXPERIMENT METHOD Figure 3. Fields of view for the two cameras. This contribution has been peer-reviewed. The double-blind peer-review was conducted on the basis of the full paper. https://doi.org/10.5194/isprs-annals-IV-2-17-2018 | © Authors 2018. CC BY 4.0 License. 2.1 Cameras 18 ISPRS Annals of the Photogrammetry, Remote Sensing and Spatial Information Sciences, Volume IV-2, 2018 ISPRS TC II Mid-term Symposium “Towards Photogrammetry 2020”, 4–7 June 2018, Riva del Garda, Italy 2.1 Cameras The Vision Measurement System (VMS) research software was used for photogrammetric processing (Geometric Software, 2018). VMS has the capability to compute multi-camera self- calibration networks with base length and rotation angle relative orientation constraints, as well as process image sequences using network or resection-intersection solutions based on video or still images. A utility program enables the computation of the mean relative orientation of the stereo-cameras based on all constrained pairs of images included in the self-calibrating network. The derived camera calibrations and mean relative orientation are then used to process the image sequences. Figure 1. IDS cameras on the base bar. In this case the 3D measurements extracted from the video sequences were computed using a straightforward intersection solution using left and right image measurements from the stereo-camera system. For this project, VMS was used to read in the compressed AVI files output from the recording processes and acquire manual measurements of rock particles on a frame by frame basis. Estimated locations in 3D are based on a coordinate system with the origin located at the mid-point between the two camera perspective centres; the Z axis represents the depth to the target; the X axis is parallel to the base between the two camera perspective centres and Y axis is orthogonal. Figure 1. IDS cameras on the base bar. The high speed videometric system used for this research is a stereo IDS camera system (IDS, 2018) comprising two IDS UI- 3060CP-C-HQ machine vision cameras fitted with 16mm lenses (see Figure 1). These cameras feature a CMOS colour sensor, global shutter, maximum resolution of 1936 by 1216 pixels, 5.86 micrometre pixel spacing and a maximum frame rate at full resolution of 166 frames per second. For the data capture, the cameras are connected via a combination of USB 3.0 cables and fibre optic extension cables to individual ports of a custom- made PC. The PC has two 250GB, high speed, solid state drives (SSDs), so that the video sequences are recorded to separate SSDs to ensure uninterrupted capture. MATLAB, produced by MathWorks (MathWorks, 2018) was used to design and implement code for automation, computation and visualisation of the data obtained from the high speed photogrammetric systems. The software was used to derive information and plots from the output 3D Cartesian coordinates obtained from VMS. 3.4 Data Processing The first step in the data processing was to compress the AVI files using the Xvid codec and a dual pass to ensure that all frames were included. This was particularly important for the calibration sequences due to the uncompressed file sizes of approximately 1Gb. Video sequences were captured of the boards being rotated and moved around within the fields of view of the cameras. The maximum duration of the recordings, based on the available capacity of the SSDs at 390 fps and 640 by 480 resolution, is several minutes. Consequently, calibration sequences in front of the barrier required only a single video capture to ensure that around 40 different perspectives of the calibration boards could be acquired. Rotating and re-positioning the calibration board behind the transparent barrier proved to be a cumbersome and slow process, so the system was used in individual frame capture mode rather than continuous video capture. VMS requires still images to process the calibrations. The left and right synchronised frames can be manually identified in each video stream for the two cameras. To improve the efficiency of the processing, a MATLAB script was written to automatically capture images from video sequences. Based on a desired number of frames and identification of the two video files, the script extracts the paired frames and generates TIFF image files. VMS automatically recognises the coded targets on the calibration boards, computes a resection of each frame and then back-drives to all remaining targets. Three networks are then computed. The first uses an externally constrained solution and fixed calibration to obtain good estimates of the camera orientation parameters. The second solution uses a self- calibration with a free network to ensure that all target coordinates are unconstrained and determined with the most favourable precision. The final solution introduces the relative orientation constraints to ensure that the initial estimates of the base separation and relative rotation angles are as close as possible to the final estimates. From previous experience, poor starting values for the relative orientation parameters can lead to many spurious image measurement rejections or a non-global minimum for the network. The calibration network in front of the barrier comprised 45 images from each camera and all 38 targets. The calibration set inside the transparent barrier was limited to 40 images from each camera and only 17 targets. 3.2 Camera Calibration Camera calibrations were carried out to ensure the accuracy of the stereo measurements and to simultaneously determine the relative orientation of the cameras. It is well understood that a transparent sheet will affect the line of sight between the cameras and the test sample, so calibrations were carried out with a test board in front of and behind the barrier to estimate the effects of the additional distortion. A physical parameter set of principal point, principal distance, radial and decentring distortions was used in both cases, under the assumption that the additional distortions from the barrier would be absorbed by the parameter set (Shortis, 2015). The tests were conducted indoors with no natural light, so additional lighting was required to account for the decreased exposure time of the cameras when recording at high frame rates. A dual-pronged fibre optic lighting system provided much of the light onto the sample within the protective barrier of the test machine. Two additional flood lights were used to provide additional lighting to ensure the particles would be visible on the highest frame rate setting of the cameras. The dual-pronged lights were positioned equally on either side of the line of sight from the camera to the sample as not to obstruct the field of view or have significant light reflecting off the protective barrier where the comminution event was expected to occur. As can be seen in Figure 2, these lights were placed practically against the protective screen to minimise the reflected light but to ensure the rock sample was illuminated as much as possible. For the sake of expediency during transport and manipulation behind the barrier, A2 and A4 size planar boards with a random pattern of 38 white targets, both coded and non-coded, on a matt black surface were used for the calibrations. The limitations of a 2D calibration object (Boutros et al., 2015) were accepted on the basis that stringent accuracy was not a priority 19 ISPRS Annals of the Photogrammetry, Remote Sensing and Spatial Information Sciences, Volume IV-2, 2018 ISPRS TC II Mid-term Symposium “Towards Photogrammetry 2020”, 4–7 June 2018, Riva del Garda, Italy for the experimental work. The A2 board was used for calibration in front of the barrier, but the field of view was such that only part of the board could be seen by both cameras. 3.2 Camera Calibration The A4 board had to be cut down to fit within the sample area of the test machine, which reduced the number of visible targets (see Figure 4). 3.4 Data Processing In each case the board was moved around and rotated within the fields of view, but the amount of variation behind the transparent barrier was much more restricted. The networks were processed with a relative orientation constraint for the left and right cameras. Figure 4. Calibration board positioned inside the impact test machine. The stereo-measurements were then captured from the synchronised AVI video files, based on the camera calibrations and relative orientation derived from the calibration network with the target board inside the barrier. To align the coordinate system with the gravity vector, manual measurements were taken of the front face of the sample prior to hammer impact. The orientation and centroid of this face was used to perform a rigid body transformation of the stereo-camera coordinate system to the test sample coordinate system (see Figure 5). Figure 4. Calibration board positioned inside the impact test machine. Figure 5. Coordinate system transformation. This contribution has been peer-reviewed. The double-blind peer-review was conducted on the basis of the full paper. https://doi.org/10.5194/isprs-annals-IV-2-17-2018 | © Authors 2018. CC BY 4.0 License. 3.3 Impact Test Video Capture However, the effect of refraction invalidates the assumption of a single projection centre for the cameras (Sedlazeck and Koch, 2012), which is the basis for the physical parameter model, and thereby introduces uncompensated errors which must be absorbed by the image measurement residuals. Two types of least squares curve fit were used to model the trajectories of the progeny particles. The first type is an XYZ curve that assumes the particles to be following a curved path in all three dimensions: 𝑓(𝑥𝑦𝑧𝑖) = ൞ 𝑓(𝑥𝑖) = 𝑎𝑥𝑖𝑡2 + 𝑏𝑥𝑖𝑡+ 𝑐𝑥𝑖 𝑓(𝑦𝑖) = 𝑎𝑦𝑖𝑡2 + 𝑏𝑦𝑖𝑡+ 𝑐𝑦𝑖 𝑓(𝑧𝑖) = 𝑎𝑧𝑖𝑡2 + 𝑏𝑧𝑖𝑡+ 𝑐𝑧𝑖 ൢ (1) (1) This approach was expected to produce a better fit to spinning particles. A simpler, second approach of a Z curve assumes that the particles are travelling in a straight line in the XY dimensions, but a curved path in the Z coordinate: 𝑓(𝑥𝑦𝑧𝑖) = ቐ 𝑓(𝑥𝑖) = 𝑏𝑥𝑖𝑡+ 𝑐𝑥𝑖 𝑓(𝑦𝑖) = 𝑏𝑦𝑖𝑡+ 𝑐𝑦𝑖 𝑓(𝑧𝑖) = 𝑎𝑧𝑖𝑡2 + 𝑏𝑧𝑖𝑡+ 𝑐𝑧𝑖 ቑ (2) (2) Contrary to expectations, Table 2 suggests small decreases in the principal distance and the radial lens distortion component. This unexpected result can be attributed to the very poor geometry of the calibrations and the narrow field of view covered by the array of targets in each case. Particle velocities were computed using the Euclidean distance travelled, divided by the 2.5 millisecond time between frames. It was deemed that any bias introduced by the linear motion assumption would be negligible compared to other sources of error, particularly the manual measurements of the images. To investigate the effects of a transparent barrier in more controlled and comparative circumstances, a separate experiment was conducted. The IDS stereo camera system was calibrated with and without a thin, transparent acrylic sheet between the cameras and an A3 calibration board. The networks comprised a total of 80 exposures and 38 targets with a strongly convergent geometry and good coverage across the entire fields of view of the cameras. In this instance there were small increases to the principal distances and radial lens distortion profiles as expected, but at levels well below the threshold of significance. Similar to the results for the impact testing machine networks, there were significant changes to the principal point location and the RMS image error degraded by a factor of 2.4 times. 3.3 Impact Test Video Capture Care was taken to estimate the centre of the particle and often the frames had to be stepped back and forward to ensure that the same particle was being 20 ISPRS Annals of the Photogrammetry, Remote Sensing and Spatial Information Sciences, Volume IV-2, 2018 ISPRS TC II Mid-term Symposium “Towards Photogrammetry 2020”, 4–7 June 2018, Riva del Garda, Italy ISPRS Annals of the Photogrammetry, Remote Sensing and Spatial Information Sciences, Volume IV-2, 2018 ISPRS TC II Mid-term Symposium “Towards Photogrammetry 2020”, 4–7 June 2018, Riva del Garda, Italy ISPRS Annals of the Photogrammetry, Remote Sensing and Spatial Information Sciences, Volume IV-2, 2018 ISPRS TC II Mid-term Symposium “Towards Photogrammetry 2020”, 4–7 June 2018, Riva del Garda, Italy ISPRS Annals of the Photogrammetry, Remote Sensing and Spatial Information Sciences, Volume IV-2, 2018 ISPRS TC II Mid-term Symposium “Towards Photogrammetry 2020”, 4–7 June 2018, Riva del Garda, Italy A comparison of selected camera calibration parameters for camera 1 is shown in Table 2. Similar results were obtained for camera 2. Clearly there are significant changes to the principal point location and principal distance. observed. Additionally, particles that bounced around the enclosure were avoided as these are not representative of the kinematics of interest for fragmented particles trajectories after comminution. Figure 6. Manual measurement of progeny particles. Table 2. Selected camera calibration parameters for camera 1. Value Outside Barrier Inside Barrier Significant Difference? Principal point X (mm) 0.098 0.041 Yes Principal point Y (mm) -0.141 -0.053 Yes Principal distance (mm) 16.333 15.945 Yes Radial distortion at 2mm radius (microns) -8.5 -10.7 No Table 2. Selected camera calibration parameters for camera 1. Figure 6. Manual measurement of progeny particles. The effects of multiple media and refractive surfaces on close- range photogrammetric measurement is well documented for underwater systems for habitat mapping (Shortis, 2015) and laboratory experiments such as water tanks (Maas, 2015). The optical path through the refractive interfaces must be modelled or, as is the case here, absorbed by the standard camera model. According to Snell’s Law, a plane parallel sheet will cause an apparent displacement of objects behind the barrier that increases with incidence angle. This effect is rotationally symmetric and should be partly absorbed by small increases in the principal distance and the radial lens distortion component of the calibration model. 3.3 Impact Test Video Capture This separate test was considered to be a more valid demonstration of the refractive effects of a transparent, planar barrier. 3.3 Impact Test Video Capture Three tests of sandstone core rock samples were conducted. Before each test, the sample was carefully aligned with the hammer and the anvil. The enclosure door was closed and hammer was raised up ready for release. The lighting was shifted back into position and a live feed of the cameras was checked to ensure the sample was clearly visible in the fields of view. The video recording was then initiated and the hammer was released. The video recording continued until all progeny particles had come to rest. Figure 5. Coordinate system transformation. To measure the fragmented particle trajectories, image observations of each particle in both left and right video frame were performed. This process involved identifying a particle in both images, using a cross-hair measurement tool to create a zoomed region window on the particle of interest, and then mouse-clicking a best estimate of the particle centroid. Figure 6 shows a pair of image frames with measured particles in both perspectives and a zoomed region of interest showing the particles and the exact measurement location. The video sequence was trimmed to only include the period of interest defined by the motion of the hammer and progeny. This was undertaken to minimise file sizes before the export to uncompressed AVIs onto the main storage disk. The SSDs were then erased and the impact test machine cleaned of all fragmented particles ready for subsequent tests to be completed. This process was repeated multiple times for a single particle over the sequence of frames. This contribution has been peer-reviewed. The double-blind peer-review was conducted on the basis of the full paper. https://doi.org/10.5194/isprs-annals-IV-2-17-2018 | © Authors 2018. CC BY 4.0 License. 4.3 Progeny Trajectories The manual measurements of the edge of the core sample were used as a test of the precision and accuracy of the stereo system. The core sample is a cylinder with a diameter of 60mm. The estimated radius of the circular profile of the sample from the image measurements was 30.05mm with an RMS error of 0.99mm. MATLAB was used to generate displacement vector diagrams. The particle trajectory coordinates and the vectors between one frame and the next show the displacement of the particles (see Figure 7). The cylindrical sample shown in the figure was included to verify the datum transformation and demonstrate that the plotted displacement vectors are correct with respect to the starting location of the sample. The RMS error of the circular fit correlates well with the estimated precisions of the XYZ coordinates of the progeny particles. The estimated precisions of the X, Y and Z coordinates were in the ranges of 0.53-0.72mm, 0.36-0.40mm and 3.1-4.2mm respectively. The large disparity between the X, Y plane and the Z depth precisions is a consequence of the relatively poor base to distance ratio of 1:4.6 for the stereo measurement system. Figure 7. Displacement vectors of the progeny particles – perspective (top) and plan (bottom). The precision in the depth direction could be improved by a more favourable base to distance ratio. However, it should be noted that industrial comminution machinery is not designed for optimal camera geometries to observe progeny kinematics and the camera geometry must be designed around the machinery. The alternative of additional cameras to provide different perspectives would theoretically provide improved precision and also greater reliability. Nevertheless the restrictions on fields of view remain and there is a penalty in terms of more complex logistics and greater processing demands. Figure 7. Displacement vectors of the progeny particles – perspective (top) and plan (bottom). The tracking of progeny after comminution was carried out based on operator identification of the particles across the frames in the video sequences. Measurement of particle centroids is a labour-intensive process with multiple issues identified for this technique. Figure 7. Displacement vectors of the progeny particles – perspective (top) and plan (bottom). To determine the coordinates of each progeny in each frame, rough approximations were made visually in each left and right image of the specific progeny. Although this method was simple, it has multiple sources of error. 4.1 Camera Calibration and Relative Orientation The results of the camera calibration networks for outside and inside the transparent barrier are shown in Table 1. The effect of the transparent barrier of the impact test machine is significant with more than 100% degradation of the RMS image error. The effect on the precisions of the target coordinates is less but still very significant. The primary factor in the degradation is the uncompensated distortions caused by the refractive surfaces, however loss of contrast due to attenuation through the transparent material of the barrier will also influence the results through increased noise. Table 1. Camera calibration results. Value Outside Barrier Inside Barrier Number of exposures 90 80 Number of targets 38 17 RMS image error (pixels) 1/27 1/12 Mean precision of target XYZ coordinates (mm) 0.012 0.017 Table 1. Camera calibration results. The effect of the transparent barrier on the relative orientation parameters is shown in Table 3. All parameters demonstrate a significant difference. In the separate experiment with the acrylic sheet, there were some small but significant changes to the base length and rotations. Similar to the results in Table 2 for the impact test machine barrier, the base length between the cameras increased for the network with the acrylic sheet in place. This contribution has been peer-reviewed. The double-blind peer-review was conducted on the basis of the full paper. https://doi.org/10.5194/isprs-annals-IV-2-17-2018 | © Authors 2018. CC BY 4.0 License. 21 ISPRS Annals of the Photogrammetry, Remote Sensing and Spatial Information Sciences, Volume IV-2, 2018 ISPRS TC II Mid-term Symposium “Towards Photogrammetry 2020”, 4–7 June 2018, Riva del Garda, Italy ISPRS Annals of the Photogrammetry, Remote Sensing and Spatial Information Sciences, Volume IV-2, 2018 ISPRS TC II Mid-term Symposium “Towards Photogrammetry 2020”, 4–7 June 2018, Riva del Garda, Italy ISPRS Annals of the Photogrammetry, Remote Sensing and Spatial Information Sciences, Volume IV-2, 2018 ISPRS TC II Mid-term Symposium “Towards Photogrammetry 2020”, 4–7 June 2018, Riva del Garda, Italy Table 3. Relative orientation parameters. Outside Barrier Inside Barrier Parameter Camera 1 Camera 2 Camera 1 Camera 2 Base (mm) -172.9 172.9 -179.3 179.3 Omega (degrees) 0.02 -0.02 0.28 -0.28 Phi (degrees) -4.33 7.25 1.23 12.71 Kappa (degrees) 0.50 0.40 0.07 0.64 Table 3. Relative orientation parameters. individual progeny, which relies on the proper illumination, focus and contrast of the particle in the imagery. 4.1 Camera Calibration and Relative Orientation Figure 6 shows frames where significant shadowing and poor contrast makes the process of particle identification difficult, particularly for a sample with homogeneous texture and colour. Due to the direction of cameras and lighting, progeny in the background projecting away from the cameras are difficult to observe either from shadowing or occlusion from progeny in the foreground. This impact was clear in the spread of tracked progeny shown in Figures 7 and 8. To identify unique progeny between left and right images, the operator had to scroll back and forth through the sequence trying to visually track and identify an individual particle. Larger particles were generally easier to identify and track, but the precision which the centroid was determined in each image decreased considerably, thus likely adding significant noise to progeny trajectories. However the poor geometry of the calibration networks for the impact testing machine prevent any confident conclusions being drawn. Further, there is an assumption here that the stereo- camera system was undisturbed during the calibration and measurement phases of the impact tests. This cannot be guaranteed and could be a possible source of the large change in the phi rotations between the video capture for the outside and inside calibrations. Reference targets on the body of the impact testing machine would have provided a more definitive check mechanism, however a visual comparison of fixed features in the frames from the calibration and measurement sequences suggests that there was no disturbance to either camera. Another key point of error that can be introduced with the manual centroid identification is from non-uniformly shaped particles and the rotation of the progeny as it travels along the trajectory. This has a potential to introduce a bias or oscillation into the observed trajectory due to incorrect centroid determination. This contribution has been peer-reviewed. The double-blind peer-review was conducted on the basis of the full paper. https://doi.org/10.5194/isprs-annals-IV-2-17-2018 | © Authors 2018. CC BY 4.0 License. 5. CONCLUSIONS A potential solution to this demand is to model each progeny in 3D, based on multiple perspectives and the rotation of the particle. The combination of image matching and 3D modelling would produce a structure-from-motion solution that should be able to estimate the sizes of a significant sample of progeny. 4.3 Progeny Trajectories First, it relied on the ability of the operator to approximate the centroid of the 22 ISPRS Annals of the Photogrammetry, Remote Sensing and Spatial Information Sciences, Volume IV-2, 2018 ISPRS TC II Mid-term Symposium “Towards Photogrammetry 2020”, 4–7 June 2018, Riva del Garda, Italy ISPRS Annals of the Photogrammetry, Remote Sensing and Spatial Information Sciences, Volume IV-2, 2018 ISPRS TC II Mid-term Symposium “Towards Photogrammetry 2020”, 4–7 June 2018, Riva del Garda, Italy ISPRS Annals of the Photogrammetry, Remote Sensing and Spatial Information Sciences, Volume IV-2, 2018 ISPRS TC II Mid-term Symposium “Towards Photogrammetry 2020”, 4–7 June 2018, Riva del Garda, Italy ISPRS Annals of the Photogrammetry, Remote Sensing and Spatial Information Sciences, Volume IV-2, 2018 ISPRS TC II Mid-term Symposium “Towards Photogrammetry 2020”, 4–7 June 2018, Riva del Garda, Italy Figure 9. Progeny velocities plotted against frame number. The vectors clearly show that the data is noisy, and the variation is greatest in the Y coordinate of the plot, which corresponds primarily to the Z coordinate of the stereo photogrammetric system. The ‘saw tooth’ effect is clear evidence of the greater uncertainty of the stereo measurements in the direction of depth from the cameras. Figure 9. Progeny velocities plotted against frame number. Figure 8 shows the particle coordinates and trajectories modelled using least squares curve fitting. The XYZ and Z curve fits (see Equations 1 and 2) are shown along with the particle locations. The majority of the progeny appear to follow vertical parabolic arcs away from the sample location as expected. In most cases the progeny follow a constant bearing and the XYZ and Z curve fits overlay each other consistently. In some cases there are clear differences between the two types of curve fit, generated by gross errors, collisions and the spin of large particles. The differences in the curve fit results can be used as a detector to identify unusual behaviour for further investigation. The method for determining progeny velocities is quite crude and could be improved for more reliable results. An algorithm for smoothing the velocities over multiple frames may be better suited to reduce the noise in the determined velocities. The small sample size, restricted by manual measurement and selection of well-defined particles, could lead to bias in the results. Nevertheless the linear regression shows a strong correlation which suggests relatively reliable results. 5. CONCLUSIONS This research successfully implemented a high speed videometric system in a laboratory experiment of drop weight testing, from which progeny kinematics could be determined. Through data processing and analysis of results, the research succeeded in showing the trajectories and velocities of progeny could be derived following comminution of the rock sample. Figure 8. Trajectory curve fits of the progeny particles – perspective (top) and plan (bottom). Several key factors were identified from this research for optimisation and improvement of the high speed photogrammetric systems and methods used for observing progeny kinematics. Some of these were: • provision of effective lighting and selecting suitable frame acquisition rates to improve the quality of the images, • increasing the number of cameras and perspectives used to potentially improve precision, reliability and correct progeny identification, p g y • modelling systematic biases from protective barriers to improve observation precisions, and • inclusion of fixed reference targets within the field of view to ensure reliability of the system. However, two major issues remain to be resolved. First, the manual image measurement process is tedious and prone to error. Straightforward improvements such as image matching from three or four cameras would provide a more efficient, reliable and accurate process, but would of course still be limited by image quality and foreground obstruction factors. The second issue is the estimation of progeny size, which is an important factor in the effectiveness of the system to provide the information required by rock engineers. A potential solution to this demand is to model each progeny in 3D, based on multiple perspectives and the rotation of the particle. The combination of image matching and 3D modelling would produce a structure-from-motion solution that should be able to estimate the sizes of a significant sample of progeny. However, two major issues remain to be resolved. First, the manual image measurement process is tedious and prone to error. Straightforward improvements such as image matching from three or four cameras would provide a more efficient, reliable and accurate process, but would of course still be limited by image quality and foreground obstruction factors. Figure 8. Trajectory curve fits of the progeny particles – perspective (top) and plan (bottom). The second issue is the estimation of progeny size, which is an important factor in the effectiveness of the system to provide the information required by rock engineers. This contribution has been peer-reviewed. The double-blind peer-review was conducted on the basis of the full paper. https://doi.org/10.5194/isprs-annals-IV-2-17-2018 | © Authors 2018. CC BY 4.0 License. 4.4 Progeny Velocities The distribution and change of the progeny velocities is shown in Figure 9. The velocities are derived from the Z curve fit given as equation (2), similar results were obtained using the XYZ curve fit. The solid black line represents the mean velocity of the progeny at each frame and the thick red line represents the linear regression. The mean velocity shows a consistent decrease from frame to frame. The frame with the most progeny tracked is highlighted in blue. The mean progeny velocity for this frame was 1.2 m/sec with a standard deviation of 1.0 m/sec. Overall, this research has provided a strong proof-of-concept for the potential for high speed photogrammetry to improve the efficacy of rock breakage characterisation. Further development of the measurement and identification techniques will lead to a more efficient and comprehensive solution that can include the distribution of progeny size, as well as trajectories and velocities. 23 ISPRS Annals of the Photogrammetry, Remote Sensing and Spatial Information Sciences, Volume IV-2, 2018 ISPRS TC II Mid-term Symposium “Towards Photogrammetry 2020”, 4–7 June 2018, Riva del Garda, Italy ISPRS Annals of the Photogrammetry, Remote Sensing and Spatial Information Sciences, Volume IV-2, 2018 ISPRS TC II Mid-term Symposium “Towards Photogrammetry 2020”, 4–7 June 2018, Riva del Garda, Italy 6. ACKNOWLEGDEMENTS Shortis, M. R., 2015. Calibration techniques for accurate measurements by underwater camera systems. Sensors, 15(12): 30810-30826; doi: 10.3390/s151229831. Dr Xing Li and Mr Craig Harbers (CSIRO) are acknowledged for their assistance with the experiments conducted in the CSIRO Rock Cutting Laboratory. Dr Sarma Kanchibotla and Mr Farhad Faramarzi (JKMRC) are acknowledged for their expert advice regarding comminution testing. Shuaeib, F. M. et al., 2004. Drop weight testing rig analysis and design. Pertanika Journal of Science and Technology Supplement, 12(2): 159-175. Sedlazeck, A. and Koch, R., 2012. Perspective and non- perspective camera models in underwater imaging – overview and error analysis. Outdoor and large-scale real-world scene analysis. F. Dellaert, J.-M. Frahm, M. Pollefeys, L. Leal-Taixé and B. Rosenhahn, Springer Berlin Heidelberg. 7474: 212-242. This contribution has been peer-reviewed. The double-blind peer-review was conducted on the basis of the full paper. https://doi.org/10.5194/isprs-annals-IV-2-17-2018 | © Authors 2018. CC BY 4.0 License. REFERENCES Allemand, J., 2016. Investigation of high speed photogrammetry for rock breakage characterisation. Unpublished Geospatial Major Project Report. RMIT University. 134 pages. Spreafico, M. C., Franci, F., Bitelli, G., Borgatti, L. and Ghirotti, M., 2017. Intact rock bridge breakage and rock mass fragmentation upon failure: quantification using remote sensing techniques. The Photogrammetric Record, 32: 513–536. doi:10.1111/phor.12225 Bearman, R. A., Briggs, C. A. and Kojovic, T., 1997. The application of rock mechanics parameters to the prediction of comminution behaviour. Minerals Engineering, 10(3): 255-264. Boutros, N., Shortis, M. R. and Harvey, E. S., 2015. A comparison of calibration methods and system configurations of underwater stereo-video systems for applications in marine ecology. Limnology and Oceanography: Methods, 13(5): 224- 236. Xvid, 2016. This is Xvid. https://www.xvid.com/ Accessed 4 January 2018. Zhang, Q. B. and Zhao, J., 2013. A review of dynamic experimental techniques and mechanical behaviour of rock materials. Rock Mechanics and Rock Engineering, 47(4): 1411- 1478. Fandrich, R. G., Clout, J. M. F. and Bourgeois, F. S., 1998. The CSIRO Hopkinson Bar Facility for large diameter particle breakage. Minerals Engineering, 11(9): 861-869. Geometric Software, 2017. VMS Help. http://www.geomsoft.com/VMS/index.shtml Accessed 4 January 2018. IDS, 2018. Imaging Development Systems GmbH. https://en.ids-imaging.com Accessed 4 January 2018. Jemwa, G. T. and Aldrich, C., 2012. Estimating size fraction categories of coal particles on conveyor belts using image texture modeling methods. Expert Systems with Applications, 39(9): 7947-7960. Ma, S. P., Yan, D., Wang, X. and Cao, Y. Y., 2011. Damage observation and analysis of a rock Brazilian disc using high- speed DIC method. Applied Mechanics and Materials, 70: 87- 92. Maas, H.-G. and Gruen, A., 1995. Digital photogrammetric techniques for high-resolution three-dimensional flow velocity measurements. Optical Engineering, 34(7): 1970-1976. MathWorks, 2018. MATLAB - The Language of Technical Computing. https://au.mathworks.com/products/matlab/ Accessed 4 January 2018. Mwange, A., Rosenkranz, J. and Lamberg, P., 2015. Testing of ore comminution behaviour in the geometallurgical context - a review. Minerals, 5(2): 276-297. NorPix, 2016. Multiple camera digital video recording software. https://www.norpix.com/products/streampix/streampix.php Accessed 4 January 2018. Accessed 4 January 2018. Noy, M. J., 2013. Automated rock fragmentation measurement with close range digital photogrammetry. Measurement and Analysis of Blast Fragmentation, pp. 13-21. Sanchidrián, J. A., Segarra, P., Ouchterlony, F. and López, L. M., 2008. On the accuracy of fragment size measurement by image analysis in combination with some distribution functions. Rock Mechanics and Rock Engineering, 42(1): 95-116. 24
https://openalex.org/W2106113664
https://europepmc.org/articles/pmc3750487?pdf=render
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RNA-Seq analysis and targeted mutagenesis for improved free fatty acid production in an engineered cyanobacterium
Biotechnology for biofuels
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Correspondence: aruffin@sandia.gov Sandia National Laboratories, Department of Bioenergy and Defense Technologies, MS 1413, P.O. Box 5800, 87185-1413, Albuquerque, NM, USA Ruffing Biotechnology for Biofuels 2013, 6:113 Ruffing Biotechnology for Biofuels 2013, 6:113 Ruffing Biotechnology for Biofuels 2013, 6:113 http://www biotechnologyforbiofuels com/conten Ruffing Biotechnology for Biofuels 2013, 6:113 http://www.biotechnologyforbiofuels.com/content/6/1/113 Open Access © 2013 Ruffing; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. RNA-Seq analysis and targeted mutagenesis for improved free fatty acid production in an engineered cyanobacterium Anne M Ruffing Abstract Background: High-energy-density biofuels are typically derived from the fatty acid pathway, thus establishing free fatty acids (FFAs) as important fuel precursors. FFA production using photosynthetic microorganisms like cyanobacteria allows for direct conversion of carbon dioxide into fuel precursors. Recent studies investigating cyanobacterial FFA production have demonstrated the potential of this process, yet FFA production was also shown to have negative physiological effects on the cyanobacterial host, ultimately limiting high yields of FFAs. Results: Cyanobacterial FFA production was shown to generate reactive oxygen species (ROS) and lead to increased cell membrane permeability. To identify genetic targets that may mitigate these toxic effects, RNA-seq analysis was used to investigate the host response of Synechococcus elongatus PCC 7942. Stress response, nitrogen metabolism, photosynthesis, and protein folding genes were up-regulated during FFA production while genes involved in carbon and hydrogen metabolisms were down-regulated. Select genes were targeted for mutagenesis to confirm their role in mitigating FFA toxicity. Gene knockout of two porins and the overexpression of ROS-degrading proteins and hypothetical proteins reduced the toxic effects of FFA production, allowing for improved growth, physiology, and FFA yields. Comparative transcriptomics, analyzing gene expression changes associated with FFA production and other stress conditions, identified additional key genes involved in cyanobacterial stress response. mitigating FFA toxicity. Gene knockout of two porins and the overexpression of ROS-degrading proteins and hypothetical proteins reduced the toxic effects of FFA production, allowing for improved growth, physiology, and FFA yields. Comparative transcriptomics, analyzing gene expression changes associated with FFA production and other stress conditions, identified additional key genes involved in cyanobacterial stress response. Conclusions: A total of 15 gene targets were identified to reduce the toxic effects of FFA production. While single-gene targeted mutagenesis led to minor increases in FFA production, the combination of these targeted mutations may yield additional improvement, advancing the development of high-energy-density fuels derived from cyanobacteria. Keywords: Free fatty acid biosynthesis, FFA biosynthesis, Cyanobacterial biofuels, Algal biofuels, Cyanobacteria, Free fatty acid, RNA-seq, FFA toxicity Physiological effects of FFA production are linked to cell stress and membrane permeability Previously, S. elongatus PCC 7942 was engineered for FFA production by gene knockout of acyl-ACP synthetase (SE01 = S. elongatus PCC 7942 Δaas) and introduction of a truncated E. coli thioesterase (SE02 = S. elongatus PCC 7942 Δaas ‘tesA) [7]. Knockout of aas was necessary to prevent recycling of FFAs through the β-oxidation path- way, while expression of the thioesterase released FFAs from acyl-ACP. Synthesis and excretion of FFAs resulted in detrimental physiological effects, ultimately limiting FFA biosynthesis. The two potential mechanisms of FFA toxicity, described previously, were investigated to deter- mine the underlying cause of the observed physiological effects in the FFA-producing strains of S. elongatus PCC 7942, SE01 and SE02. While the mechanism(s) involved in FFA toxicity re- main unproven, two possible mechanisms have been proposed based on the available evidence: (1) UFAs may react with reactive oxygen species (ROS) to generate toxic products such as hydroperoxides, free radical spe- cies, aldehydes, and oxylipins, and (2) the amphipathic structure of FFAs may allow them to intercalate into both the cell and thylakoid membranes [8]. The gener- ation of toxic products will cause widespread cellular damage due to the chemical reactivity of the generated products, while the intercalation of FFAs in membranes will inhibit membrane proteins and destabilize mem- brane structure. The two proposed mechanism may even act in concert, with the intercalation of FFAs in the thylakoid membrane disrupting photosynthetic electron transport, leading to excess light collection and subse- quent ROS generation. These potentially complex mech- anisms of FFA toxicity make this issue difficult to resolve, yet this obstacle must be overcome to enable FFA-based biofuel production. ROS levels were measured in both the wild type and FFA-producing strains to determine whether these spe- cies were present for UFA degradation. As illustrated in Figure 1C, ROS generation in the wild type (7942) was negligible (< 2.56 ± 0.65%), yet both FFA-producing strains, SE01 and SE02, had intracellular ROS accumula- tion (up to 11.1 ± 2.3% and 58.1 ± 24%, respectively). The highest ROS levels were measured in SE02, with nearly 60% of the cell population staining positive for ROS at day 20. Background conversion of sugar feedstocks into FFAs using hetero- trophic microorganisms such as Escherichia coli [5] and on the conversion of carbon dioxide into FFAs using photosynthetic microorganisms such as the cyanobacterial species, Synechocystis sp. PCC 6803 and Synechococcus elongatus PCC 7942 [6,7]. While these efforts have been successful in producing FFAs, overall productivities are limited by the toxic effects of FFA synthesis. Free fatty acids (FFAs) have recently garnered attention as potential precursors for renewable fuel production. FFAs are ideal targets for biofuel production: the path- way for FFA biosynthesis is already present in micro- organisms for membrane production [1]; FFAs are passively excreted outside the cell for easy extraction without cell harvesting [2,3]; and FFAs can be readily converted into high-energy-density fuels [4]. Recent ef- forts in microbial FFA production have focused on the Exogenous FFAs are toxic to many organisms, including Gram-negative and Gram-positive bacteria, microalgae, fungi, protozoans, and multi-cellular organisms [8]. In fact, FFA production has been documented as an anti- microbial defense mechanism in multicellular organ- isms. The primary targets of FFA toxicity are cellular Ruffing Biotechnology for Biofuels 2013, 6:113 http://www.biotechnologyforbiofuels.com/content/6/1/113 Page 2 of 15 membranes, whereby FFAs disrupt the electron transport chain and oxidative phosphorylation, damaging cellular energy production. FFAs are also believed to inhibit en- zyme activity, impair nutrient uptake, and alter cell mem- brane permeability [8]. In microalgae, cell lysis was observed following FFA addition along with dissociation of the phycobilisomes from the thylakoid membrane [9]. Evidence of these toxic effects was also found in FFA- producing cyanobacteria for biofuel production. FFA- producing strains of S. elongatus PCC 7942 had reduced photosynthetic yields, suggestive of electron transport dis- ruption, and the phycobiliproteins of these strains were aggregated at the cell poles rather than evenly dispersed throughout the thylakoid membranes, indicating dissoci- ation of the phycobiliosomes [7]. FFA-producing strains of Synechocystis sp. PCC 6803 also had increased membrane permeability [6]. Unsaturated fatty acids (UFAs) have gen- erally been found to be more toxic than their saturated counterparts [8]; this was confirmed in S. elongatus PCC 7942 by the exogenous addition of both saturated fatty acid (SFA) and UFA [7]. Only UFA addition yielded nega- tive physiological effects, while no effect was observed with SFA addition. Background The physiological effects associated with exogenous UFA addition, however, were found to dif- fer from the effects observed with FFA biosynthesis, suggesting that the mechanism of toxicity may also differ. analysis, differentially expressed genes were identified for either gene knockout or gene overexpression. The physio- logical responses and FFA productivities of these targeted mutants were assessed to determine the gene’s role in cel- lular FFA toxicity response. Additionally, the transcrip- tional response to FFA production was compared to other transcriptomic studies of cyanobacterial stress response to identify the key genes involved in general cyanobacterial stress response. From the analyses presented in this study, genetic targets were determined for improving cyanobac- terial physiology during FFA production. Physiological effects of FFA production are linked to cell stress and membrane permeability In general, the measurement of ROS-positive cells trended with FFA production (7942 < SE01 < SE02), and there was a statistically significant correlation between the amount of FFA on a per cell weight basis and the percentage of ROS-positive cells (R2 = 0.46, p = 0.0367) (Figure 1 A and C). However, the values of FFA concen- tration (mg/L) and the percentage of ROS-positive cells did not correlate (R2 = 0.13, p = 0.721) (Figure 1 B and C), suggesting that ROS generation is due to intracellu- lar FFAs rather than extracellular. The accumulation of ROS during FFA production may indicate a potential for UFA degradation into toxic products, as described in the first proposed mechanism; however, ROS accu- mulation is also a hallmark of cellular stress [10]. Thus, we are presented with the ‘chicken or the egg’ dilemma, do the UFAs react with ROS to produce compounds In order to surmount the physiological effects of FFA production, the underlying mechanisms of FFA toxicity must be investigated along with the specific host response. This study explored the two proposed mechanisms of FFA toxicity through analysis of ROS generation and cell mem- brane permeability. The global transcriptional response of the cyanobacterial host, S. elongatus PCC 7942, to FFA production was quantified using RNA-seq, and from this Ruffing Biotechnology for Biofuels 2013, 6:113 Page 3 of 15 http://www.biotechnologyforbiofuels.com/content/6/1/113 Ruffing Biotechnology for Biofuels 2013, 6:113 Page 3 of 15 Ruffing Biotechnology for Biofuels 2013, 6:113 http://www.biotechnologyforbiofuels.com/content/6/1/113 g gy http://www.biotechnologyforbiofuels.com/content/6/1/113 Figure 1 FFA production and physiological measurements for wild-type (7942) and FFA-producing strains (SE01 and SE02): (A) mg of FFA per gram of dry cell weight; (B) FFA concentration in mg/L; (C) percentage of cells staining positive for ROS; (D) percentage of cells with permeable membranes. Data are averages of 3 biological replicates with error bars indicating the standard deviation of these measurements. Figure 1 FFA production and physiological measurements for wild-type (7942) and FFA-producing strains (SE01 and SE02): (A) mg of FFA per gram of dry cell weight; (B) FFA concentration in mg/L; (C) percentage of cells staining positive for ROS; (D) percentage of cells with permeable membranes. Data are averages of 3 biological replicates with error bars indicating the standard deviation of these measurements. that are toxic to the host cell, or do the FFAs them- selves cause cellular stress which leads to ROS gener- ation? RNA-seq analysis of FFA production such as high light-inducible proteins (Synpcc7942_1997 and hliC) and heat shock proteins (hsp20 and hsp90) were significantly up-regulated with FFA production. As described in the previous section, FFA production was accompanied by elevated ROS levels. To minimize ROS-induced cellular damage, oxidative stress response genes were elevated during FFA production, including ROS-degrading enzymes such as superoxide dismu- tase (Synpcc7942_0801) and glutathione peroxidases (Synpcc7942_1214 and Synpcc7942_0437). High light- inducible proteins have also been shown to enhance the ability of cyanobacteria to cope with oxidative stress re- sponse under high light [13]. The production of carot- enoids to absorb excess light energy and prevent photooxidative damage is yet another stress response mechanism in cyanobacteria [14]. Phytoene dehydro- genase, a key enzyme in carotenoid biosynthesis, was also up-regulated with FFA production. Enhanced tran- scription of these stress response mechanisms may con- tribute to the survival of SE01 and SE02 during FFA production. To investigate the transcriptional response of S. elongatus PCC 7942 to FFA production, both the wild type (7942) and FFA-producing (SE01 and SE02) cultures were sam- pled at 100 h and 240 h for RNA-seq analysis. Genes dif- ferentially expressed during high FFA production were identified through six different comparisons: A) SE02: SE01 at 100 h, B) SE02:7942 at 100 h, C) SE01:7942 at 240 h, D) SE02:7942 at 240 h, E) 240 h:100 h for SE01, and F) 240 h:100 h for SE02. It should be noted that com- parisons A and B are only valid for increased extracellular FFA production on a cell weight basis (mg/gDCW), while comparison F is only valid for enhanced extracellular FFA concentration (mg/L). All other comparisons (C, D, and E) apply to both measurements of FFA production (Figure 1 A and B). Differentially expressed genes were de- fined as having fold changes greater than 2; these genes are listed in Tables S1 and S2 in Additional file 1 along with their expression fold changes and associated p-values. Combining results from the six comparisons, 228 genes were up-regulated and 223 genes were down-regulated with increased FFA production (Table 1). The largest func- tional gene category for both up- and down-regulated genes was hypothetical proteins, comprising approxi- mately 45% of the total quantity of differentially expressed genes. Unexpectedly, many genes associated with nitrogen me- tabolism were up-regulated (Table 1). RNA-seq analysis of FFA production Three genes associ- ated with nitrate transport were elevated during FFA production along with a nitrate reductase and ferredoxin- nitrite reductase, constituting the nitrogen acquisition pathway. Additionally, adenosine deaminase, an enzyme involved in intracellular nitrogen scavenging, showed en- hanced expression, suggesting that FFA-producing cells had activated a nitrogen limitation response. Biochemical data also supports this perceived nitrogen limitation Physiological effects of FFA production are linked to cell stress and membrane permeability The fact that there is no ROS accumulation in the wild type suggests that the latter hypothesis is correct. suggesting that intracellular FFA production also influ- ences membrane permeability. Based on this preliminary assessment, both proposed mechanisms of FFA toxicity are possible and may be con- tributing factors of the observed toxicity. So the question remains, how can these toxic effects be prevented or miti- gated? Microorganisms have evolved a multitude of mech- anisms for coping with stressful conditions, including both general and stress-specific response mechanisms [11]. Such natural mechanisms may be activated in S. elongatus PCC 7942 with FFA production. Furthermore, some strains of microalgae are known to excrete a polyunsaturated fatty acid (PUFA) as a defense mechanism against grazers [12]. Along with this defense mechanism, microalgae have likely evolved mechanisms to protect against PUFA toxicity. Therefore, RNA-seq analysis was applied to investigate nat- ural mechanisms of FFA toxicity defense in S. elongatus PCC 7942; amplification of these natural responses may allow for increased FFA production. The amphipathic character of FFAs may allow them to intercalate into cellular membranes, altering mem- brane fluidity, membrane integrity, and the activity of membrane-bound proteins, such as those involved in photosynthesis. To investigate this proposed mechan- ism of FFA toxicity, a membrane impermeable nucleic acid stain, SYTOX, was used to interrogate membrane permeability in the wild type and FFA-producing strains. Similar to ROS accumulation, cell membrane permeability trended with FFA production (7942 < SE01 < SE02) (Figure 1D). Additionally, the percentage of membrane-permeable cells had statistically sig- nificant correlation with the amount of FFA per gDCW (R2 = 0.48, p = 2.10 x 10-4) (Figure 1B and D), Page 4 of 15 Ruffing Biotechnology for Biofuels 2013, 6:113 http://www.biotechnologyforbiofuels.com/content/6/1/113 Ruffing Biotechnology for Biofuels 2013, 6:113 http://www.biotechnologyforbiofuels.com/content/6/1/113 Up-regulated transcript expression Genes showing increased expression during elevated FFA production were predominantly associated with known cellular stress responses. General stress response genes Table 1 Number of differentially expressed genes in S. elongatus PCC 7942 during FFA production based on predicted gene function Gene Function Up-regulated Down-regulated Total # Genes % # Genes % # Genes % Stress Response 11 4.8 11 4.9 22 4.9 Photosynthesis 10 4.4 16 7.2 26 5.8 Electron Transport 10 4.4 8 3.6 18 4.0 Carbon Metabolism 16 7.0 13 5.8 29 6.4 Nitrogen Metabolism 7 3.1 2 0.9 9 2.0 Hydrogen Metabolism 5 2.2 7 3.1 12 2.7 Protein Biosynthesis & Processing 8 3.5 7 3.1 15 3.3 Nucleotide Biosynthesis & Metabolism 10 4.4 5 2.2 15 3.3 Transporters 14 6.1 10 4.5 24 5.3 Regulatory Proteins 7 3.1 19 8.5 26 5.8 c-di-GMP Associated Proteins 1 0.4 7 3.1 8 1.8 Cell Wall Biosynthesis 7 3.1 3 1.3 10 2.2 Other 22 9.6 14 6.3 36 8.0 Hypothetical Proteins 100 43.9 101 45.3 201 44.6 Totals 228 100.0 223 100.0 451 100.0 fferentially expressed genes in S. elongatus PCC 7942 during FFA production based on predicted Table 1 Number of differentially expressed genes in S. elongatus PCC 7942 during FFA produc f ti Ruffing Biotechnology for Biofuels 2013, 6:113 http://www.biotechnologyforbiofuels.com/content/6/1/113 Ruffing Biotechnology for Biofuels 2013, 6:113 http://www.biotechnologyforbiofuels.com/content/6/1/113 Ruffing Biotechnology for Biofuels 2013, 6:113 http://www.biotechnologyforbiofuels.com/content/6/1/113 Page 5 of 15 changed during FFA production. Several other transport proteins and porin proteins were found to be up-regulated during FFA production (Additional file 1: Table S1). While these proteins may contribute to FFA export, there was no consensus among the 6 comparisons of high v. low FFA production, with potential FFA export proteins showing a conserved expression enhancement in only 2 of the 6 comparisons. response, with selective degradation of the nitrogen- containing chlorophyll-a pigment [7,15]. With sufficient levels of nitrate in the media, the signal for activation of this nitrogen-limited response with FFA production re- mains unknown; however, nutrient acquisition and storage may simply be a general, conserved stress response in S. elongatus PCC 7942. Increased FFA production also affected protein produc- tion, with elevated transcript levels of the groEL-groES chaperone system (Additional file 1: Table S1). The GroEL-GroES system was also up-regulated under high light stress in other cyanobacterial species [16], suggesting that this too may be a conserved stress response. Down-regulated transcript expression g p p In addition to the up-regulation of genes involved in stress response and photosynthesis, genes within these functional categories were also significantly down-regulated (Tables 1 and Additional file 1: Table S2). Across the 6 comparisons, however, there was little consensus among the down- regulated stress response genes, implying that repression of stress response proteins is not a conserved response to FFA production. On the other hand, there was some con- sensus to support the reduced expression of genes involved in photosynthesis. In particular, the light-independent protochlorophyllide reductase subunit B was down- regulated in 4 out of the 6 comparisons. This protein is in- volved in light-independent chlorophyll biosynthesis [20], and decreased expression of this gene may contribute to the measured decrease in chlorophyll-a content for the FFA-producing cultures [7]. Other photosynthetic genes with reduced expression include components of photo- system I (PSI), specifically PSI reaction center subunits X and XII. The down-regulation of PSI components along with up-regulation of PSII components suggests an imbal- ance of electron distribution between PSI and PSII. Pre- vious hyperspectral imaging of FFA-producing cells indicated that the PBSs were no longer attached to the thylakoid membranes. As PBSs are the light-harvesting pigments for PSII [21], this detachment would reduce elec- tron flow through PSII, possibly leading to the measured transcriptional changes to restore the PSI:PSII balance. Conserved down-regulation of cytochrome associated pro- teins, cytochrome aa3 controlling protein and cytochrome c oxidase subunit II, may represent another cellular mech- anism to restore the electron flow balance. PBS detach- ment would also explain the up-regulation of nblA to degrade the non-functional PBSs. Transcriptional repres- sion of genes involved in chlorophyll biosynthesis and elec- tron flow distribution support biochemical measurements of reduced chlorophyll-a pigment concentration and de- creased photosynthetic yield measurements [7]. Transcripts associated with photosynthesis were sig- nificantly up-regulated during FFA production. The RNA polymerase sigma factor, sigD (Synpcc7942_0672), had elevated expression; SigD is a light-inducible sigma factor which activates transcription of psbA, the D1 pro- tein of photosystem II (PSII) [18]. In agreement with the elevated sigD transcript levels, a PSII D1 protein (Synpcc7942_0893) showed enhanced expression. Many other PSII proteins were up-regulated, including several PSII D2 proteins (Synpcc7942_1637 and Synpcc7942_0655) and the PSII reaction center protein N (psbN). In 3 out of the 6 comparisons, transcript levels of the PBS degradation protein, nblA, were significantly increased by an average of 4.37-fold. Up-regulated transcript expression More- over, GroEL and other molecular chaperonins are required for the insertion and stabilization of membrane proteins and ribulose-1,5-bisphosphate carboxylase/oxygenase (Ru- BisCO) assembly [17]. In a previous study [7], we observed reduced growth rates and photosynthetic yields concomi- tant with FFA production, which may result from im- paired photosynthesis and carbon fixation, inactivation of electron transport in the thylakoid membrane, or reduced binding affinity of phycobilisomes (PBSs) to the thylakoid membranes. As cyanobacterial photosynthesis, electron transport, and light harvesting all involve integral mem- brane or membrane-associated proteins, the groEL and groES transcripts may be elevated in response to the low activity of these membrane processes. Down-regulated transcript expression Phycobiliprotein levels, however, did not change significantly in the FFA-producing cultures [7]. A potential solution to the issue of FFA toxicity is to overexpress FFA export proteins, effectively removing the toxic product from the intracellular space. Several efflux pumps in E. coli, particularly TolC-AcrAB, have been identified as potential FFA exporters, although increased expression of these genes did not improve FFA production in the E. coli host [19]. While there is no significant tolC homolog in S. elongatus PCC 7942, a hydrophobe/amphi- phile efflux protein (Synpcc7942_2369) was found to be homologous to several E. coli efflux proteins including acrA, acrB, acrD, acrF, mdtB, and mdtF. However, gene expression of Synpcc7942_2369 was not significantly Another conserved response of transcriptional repres- sion is associated with carbon metabolism. Specifically, phosphoenolpyruvate (PEP) synthase was significantly down-regulated an average of 3.87-fold in 5 of the 6 com- parisons. PEP synthase catalyzes an energy-consuming re- action, and reduced expression of this enzyme may serve as a stress-induced mechanism for energy conservation. Page 6 of 15 Ruffing Biotechnology for Biofuels 2013, 6:113 http://www.biotechnologyforbiofuels.com/content/6/1/113 Ruffing Biotechnology for Biofuels 2013, 6:113 http://www.biotechnologyforbiofuels.com/content/6/1/113 Ruffing Biotechnology for Biofuels 2013, 6:113 http://www.biotechnologyforbiofuels.com/content/6/1/113 Repression of PEP synthase also increases carbon flux through the glycolysis pathway, which feeds into the fatty acid biosynthesis pathway. Thus, the lower level of fatty acids available for membrane biosynthesis, due to fatty acid cleavage by the recombinant thioesterase, may cause the cell to increase carbon flux through the fatty acid bio- synthesis pathway via PEP synthase repression. A sodium- dependent bicarbonate transporter showed an average 9-fold decrease in transcript level for 3 comparisons, suggesting a decrease in photosynthetic carbon fixation, and subsequently, a lower overall carbon flux may accom- pany FFA production. Lastly, the long-chain-fatty-acid CoA ligase or acyl ACP synthetase (aas) was also down- regulated in comparisons B, C, and D. As you may re- call, this gene was targeted for gene knockout in both SE01 and SE02. Therefore, the reduced transcription of aas in only comparisons of the wild type with the engineered strains (i.e. B, C, and D) validates the data processing protocol developed for the RNA-seq analysis. Repression of carbon metabolism in FFA- producing cultures, as suggested by RNA-seq analysis, may serve as yet another indicator of severe cellular stress. Down-regulated transcript expression Genetic targets for improved FFA production Genetic targets for improved FFA production In an effort to identify potential targets for reducing the toxic effects of FFAs and improving FFA production, dif- ferentially expressed genes were targeted for either gene knockout or gene overexpression in SE02. SE02 was se- lected as the host strain for these targeted mutations be- cause aas deletion is required to prevent FFA recycling and SE02 had increased physiological effects during FFA production. The gene targets included hypothetical pro- teins, ROS-degrading proteins, and possible FFA exporters (Table 2). Nine hypothetical proteins were targeted which showed differential gene expression in 4 of 5 comparisons (excluding comparison F). The three hypothetical pro- teins showing a significant increase in gene expression were targeted for gene knockout while the six down- regulated hypothetical proteins were overexpressed. These hypothetical protein mutants were expected to have decreased FFA production if the gene target is in- volved in either FFA production or FFA toxicity mitiga- tion. Four ROS-degrading proteins, 2 glutathione peroxidases, a superoxide dismutase, and catalase, were also targeted for overexpression. As elevated ROS pro- duction was found to correlate with FFA production (Figure 1), these mutants were expected to show im- proved FFA tolerance. Lastly, four potential FFA ex- porters, 2 porins and 2 transport proteins, were targeted for gene knockout. If these export proteins participate in FFA export, the associated knockout mutants should show reduced extracellular FFA concentrations and possibly an increased toxic response to FFA production. Genes associated with hydrogen metabolism had re- duced transcript levels during FFA production. The genes encoding the hydrogenase accessory proteins, hypE and hypD, were repressed in multiple comparisons (Additional file 1: Table S2). Transcriptional changes in hydrogen me- tabolism were not expected due to the fact that hydrogen biosynthesis is predominantly active only under anaerobic conditions as a result of the inhibitory effect of oxygen [22]. The hydrogenase in S. elongatus PCC 7942 (hoxEF and hoxUYH), however, is a bidirectional hydrogenase with undetermined physiological function. Proposed func- tions for this hydrogenase includes the delivery of elec- trons into respiratory complex I and the regulation of photosynthetic electron flow [23]. Repression of hydrogenase-associated genes may therefore result from the reduced electron flow in PSII due to FFA production, as evidenced by low photosynthetic yields [7]. Out of the 17 targeted mutants, 15 were successfully constructed. Down-regulated transcript expression The knockout mutants for the hypothetical proteins Synpcc7942_1561 and Synpcc7942_1023 could not be obtained despite repeated transformation attempts, indicating that these genes may be essential for cell growth. The 15 constructed mutants were screened in shake-flask experiments to determine the effect of the targeted mutation on FFA production and cell physiology. For each mutant, 2 transformants were analyzed to ac- count for biological variation. Additionally, SE02a was constructed as a control by integrating the empty vector, pSA, into SE02 at neutral integration site II (NSII). Many regulatory proteins were down-regulated across multiple comparisons as well as genes associated with the global signaling molecule, cyclic-di-guanosylmonophosphate (c-di-GMP). Cellular c-di-GMP levels have been linked to the regulation of a variety of cellular processes, including cellular motility, virulence, heavy metal resistance, phage resistance, cell-cell communication, photosynthesis, exo- polysaccharide production, and biofilm formation [24]. The reduced expression of these c-di-GMP proteins was almost exclusively associated with comparisons A and B, suggesting that c-di-GMP plays a unique role in early FFA production in SE02. Further exploration of the role of c-di-GMP in FFA production may provide insight into the increased toxicity observed in the SE02 strain. Significant changes in relative cell concentration oc- curred most frequently for days 7, 10, and 13, following in- duction of the recombinant proteins (Figure 2 A, C, and E). The hypothetical protein overexpression mutants S1655#2 and #5, S0122#4, S0900#1 and #2, and S1845#1, along with the ROS-degrading protein overexpression mutants S1656#1, S0801#1, S0437#1 and #2, and S1214#1, had increased cell concentrations relative to SE02a after re- combinant protein induction. Improved growth of the hypothetical protein overexpression mutants was unex- pected, as these genes were repressed during FFA produc- tion. On the other hand, overexpression of ROS-degrading Ruffing Biotechnology for Biofuels 2013, 6:113 http://www.biotechnologyforbiofuels.com/content/6/1/113 Page 7 of 15 Page 7 of 15 Table 2 Differentially expressed genes in S. Down-regulated transcript expression elongatus PCC 7942 during FFA production selected for targeted mutagenesis Locus Product Average FC Targeted Mutagenesis Hypothetical Proteins Synpcc7942_0444 hypothetical protein 3.27 Knockout Synpcc7942_1561 hypothetical protein 2.67 Knockout Synpcc7942_1023 hypothetical protein 2.15 Knockout Synpcc7942_1476 hypothetical protein −4.59 Overexpression Synpcc7942_B2645 hypothetical protein −7.35 Overexpression Synpcc7942_1655 hypothetical protein −2.98 Overexpression Synpcc7942_0900 hypothetical protein −2.92 Overexpression Synpcc7942_B2632 hypothetical protein −2.68 Overexpression Synpcc7942_0122 hypothetical protein −2.53 Overexpression Synpcc7942_1845 hypothetical protein −2.28 Overexpression ROS-Degrading Proteins Synpcc7942_1214 glutathione peroxidase 2.63 Overexpression Synpcc7942_0801 superoxide dismutase 2.56 Overexpression Synpcc7942_0437 glutathione peroxidase 2.54 Overexpression Synpcc7942_1656 catalase/peroxidase HPI −2.38 Overexpression Potential FFA Exporters Synpcc7942_2175 transport system substrate-binding protein 2.99 Knockout Synpcc7942_1224 ABC-transporter membrane fusion protein 2.74 Knockout Synpcc7942_1464 porin 2.33 Knockout Synpcc7942_1607 porin; major outer membrane protein 2.16 Knockout Average fold change (FC) values are calculated by averaging the fold change associated with differentially expressed genes under the 6 different comparisons of high v. low FFA production. Table 2 Differentially expressed genes in S. elongatus PCC 7942 during FFA production selected for targeted mutagenesis erentially expressed genes in S. elongatus PCC 7942 during FFA production selected for targeted 10, and 13) and enhanced FFA concentration (days 13, 16, and 19). In addition, the correlation between relative cell concentration and relative extracellular FFA concentration does not always hold true. The porin knockout mutants, Δ1464#2 and #5, showed increased relative extracellular FFA concentration (Figure 2F) without having an improve- ment in relative cell concentration (Figure 2E). The other porin mutant Δ1607#3 also had improved FFA produc- tion. Enhanced extracellular FFA concentration in the Δ1464 and Δ1607 transformants suggests that these porins may actually contribute to FFA uptake rather than export. In general, only small improvements in relative extracellular FFA concentrations were observed for the 15 mutants, yet by targeting these multiple genes in parallel, further gains in FFA productivity may be realized. genes was expected to improve cellular stress resistance and overall fitness; the enhanced relative cell concentrations of the ROS-degrading mutants provide evidence to support this theory. The knockout mutants Δ2175#1 and Δ1607#3 also had statistically significant increases in relative cell concentration. As putative FFA exporters, these knockout mutants were anticipated to have higher FFA toxicity and therefore lower relative cell concentrations. Down-regulated transcript expression While relative cell concentrations showed significant changes after induc- tion, these differences were reduced over time, so that at the end of cultivation (day 19), only a few mutants maintained a significant deviation in relative cell concentra- tion (Figure 2 A, C, E). Changes in relative extracellular FFA concentration were found to correlate with the changes in relative cell concen- tration for the hypothetical protein and ROS-degrading protein overexpression mutants; the mutants showing in- creased relative cell concentrations also had increased rela- tive extracellular FFA concentrations (Figure 2 B and D). This relationship between relative cell concentration and increased extracellular FFA concentration would be expected if the rate of FFA production was similar on a per cell basis. Unexpectedly, however, there appears to be a 6 day delay between increased cell concentration (days 7, Photosynthetic yield measurements were analyzed to serve as an estimate of overall cell physiology. For the con- trol strain SE02a, photosynthetic yield declined severely after induction at day 4, with photosynthetic yield measure- ments approaching zero at day 7 (Figure 3). Hypothetical protein overexpression mutants (S1655#2 and #5, S0122#4, and S0900#2), ROS-degrading protein overexpression mu- tants (S1214#1, S0801#1, and S1656#1) and a porin knock- out mutant (Δ1464#2) all showed significantly elevated Ruffing Biotechnology for Biofuels 2013, 6:113 http://www.biotechnologyforbiofuels.com/content/6/1/113 Page 8 of 15 A B C D E F Figure 2 Cell concentration and extracellular FFA concentration of targeted mutants relative to the control strain, SE02a. (A) relative cell concentration of mutants overexpressing hypothetical proteins; (B) relative extracellular FFA concentration of mutants overexpressing hypothetical proteins; (C) relative cell concentration of mutants overexpressing ROS-degrading proteins; (D) relative extracellular FFA concentration of mutants overexpressing ROS-degrading proteins; (E) relative cell concentration of knockout mutants; (F) relative extracellular FFA concentration of knockout mutants. Knockout mutants include one hypothetical protein mutant (Δ0444) and 4 putative transport proteins (Δ2175, Δ1224, Δ1464, and Δ1607). Data are averages of 3 biological replicates with error bars indicating the standard deviation of these measurements, with a few exceptions: Due to strain instabilities, mutants SB2632#1 and S1476#1 have only 2 biological replicates, and mutants SB2632#2 and S1656#2 have only 1 biological replicate. The dashed line at y = 1 indicates no change relative to the control, SE02a. Down-regulated transcript expression An asterisk (*) above the data for day 7 indicates that difference between the control (SE02a) and mutant strain was determined to be statistically significant by ANOVA analysis (see Table S7 in Additional data file 3 for calculated p-values). photosynthetic yields at day 7, ranging from 0.3 to 0.4 (Figure 3). Not surprisingly, these mutants also had in- creased relative cell concentrations and relative extra- cellular FFA concentrations, with the exception of Δ1464#2, which had increased relative extracellular FFA concentrations but no change in relative cell concentra- tion (Figure 2). The general positive correlation between the three measured parameters of cell concentration, extra- cellular FFA concentration, and photosynthetic yield sug- gests that the corresponding genetic targets are involved in cellular defense mechanisms for FFA toxicity. While the ROS-degrading proteins are involved in well-known stress response mechanisms [10], the identification of 3 hypothet- ical proteins (Synpcc7942_1655, Synpcc7942_0122, and Synpcc7942_0900) and 2 porin proteins (Synpcc7942_1464 and Synpcc7942_1607) that counteract the toxic effects of FFA production provides new targets for improving cyano- bacterial FFA production. nitrogen metabolism genes was highly conserved among stress conditions, with 80% and 83% of stress response and nitrogen metabolism genes up-regulated during FFA production having at least one matching up-regulated stress homolog (Additional file 2: Table S3). Interestingly, the transcriptional response to nitrogen limitation in Synechococcus sp. PCC 7002 did not show any significant changes in genes associated with nitrogen metabolism [26], suggesting that the activation of nitrogen metabolism may be post-translational. The down-regulation of carbon and hydrogen metabolic genes was conserved among the cyanobacterial stress responses, with 80% and 100% of car- bon and hydrogen metabolism genes repressed during FFA production having at least one corresponding homo- log among the other stress conditions (Additional file 2: Table S4). This provides further evidence that S. elongatus PCC 7942 is highly stressed during FFA production, and it also suggests that conserved stress response mechanisms exist among cyanobacteria. g y Genetic targets for improving FFA production in S. elongatus PCC 7942 include both general stress re- sponse genes as well as response mechanisms that may be specific for FFA-induced stress. Stress response genes that were highly conserved across the cyanobac- terial transcriptomic studies also had high fold change values. Down-regulated transcript expression In particular, two genes were differentially regulated in 13 of the compared stress conditions: the high light in- ducible protein (Synpcc7942_1997, average +11.47 fold change) and a hypothetical protein (Synpcc7942_0551, average −4.52 fold change). Another 4 genes were up- regulated in 11 or 12 of the stress conditions: the heat shock protein Hsp20 (Synpcc7942_2401, average +102.59 fold change), the NAD(P)H-quinone oxidoreductase subunit 4 (Synpcc7942_1439, average +10.54 fold change), RNA poly- merase sigma factor SigD (Synpcc7942_0672, average +4.22 fold change), and Beta-Ig-H3/fasciclin (Synpcc7942_1606, average +12.44 fold change). These 6 genes are candidate targets for boosting the native stress response mechanisms of S. elongatus PCC 7942. The hypothetical protein and porin genes identified from targeted mutagenesis in the pre- vious section were also investigated in this comparative transcriptomics analysis. Out of the 3 hypothetical pro- tein targets (Synpcc7942_1655, Synpcc7942_0122, and Synpcc7942_0900), Synpcc7942_1655 was the only gene without homologs in Synechococcus sp. PCC 7002 and Synechocystis sp. PCC 6803. Both Synpcc7942_0122 and Synpcc7942_0900 had homologs in the other cyanobacterial Down-regulated transcript expression An asterisk (*) following the mutant strain name in the legend indicates that difference between the control (SE02a) and mutant strain was determined to be statistically significant by ANOVA analysis (see Table S7 in Additional file 3 for calculated p-values). A B B C D D F E ncentration and extracellular FFA concentration of targeted mutants relative to the control strain, SE02a. (A) relativ Figure 2 Cell concentration and extracellular FFA concentration of targeted mutants relative to the control strain, SE02a. (A) relative cell concentration of mutants overexpressing hypothetical proteins; (B) relative extracellular FFA concentration of mutants overexpressing hypothetical proteins; (C) relative cell concentration of mutants overexpressing ROS-degrading proteins; (D) relative extracellular FFA concentration of mutants overexpressing ROS-degrading proteins; (E) relative cell concentration of knockout mutants; (F) relative extracellular FFA concentration of knockout mutants. Knockout mutants include one hypothetical protein mutant (Δ0444) and 4 putative transport proteins (Δ2175, Δ1224, Δ1464, and Δ1607). Data are averages of 3 biological replicates with error bars indicating the standard deviation of these measurements, with a few exceptions: Due to strain instabilities, mutants SB2632#1 and S1476#1 have only 2 biological replicates, and mutants SB2632#2 and S1656#2 have only 1 biological replicate. The dashed line at y = 1 indicates no change relative to the control, SE02a. An asterisk (*) following the mutant strain name in the legend indicates that difference between the control (SE02a) and mutant strain was determined to be statistically significant by ANOVA analysis (see Table S7 in Additional file 3 for calculated p-values). Ruffing Biotechnology for Biofuels 2013, 6:113 Page 9 of 15 http://www.biotechnologyforbiofuels.com/content/6/1/113 Ruffing Biotechnology for Biofuels 2013, 6:113 Page 9 of 15 Page 9 of 15 Ruffing Biotechnology for Biofuels 2013, 6:113 http://www.biotechnologyforbiofuels.com/content/6/1/113 g gy , http://www.biotechnologyforbiofuels.com/content/6/1/113 Figure 3 (See legend on next page.) Figure 3 (See legend on next page.) Ruffing Biotechnology for Biofuels 2013, 6:113 http://www.biotechnologyforbiofuels.com/content/6/1/113 Ruffing Biotechnology for Biofuels 2013, 6:113 http://www.biotechnologyforbiofuels.com/content/6/1/113 Page 10 of 15 (See figure on previous page.) Figure 3 Photosynthetic yield measurements for the targeted mutants: (A) hypothetical protein overexpression mutants; (B) ROS-degrading protein overexpression mutants; (C) knockout mutants, including include one hypothetical protein mutant (Δ0444) and 4 putative transport proteins (Δ2175, Δ1224, Δ1464, and Δ1607). Data are averages of 3 biological replicates with error bars indicating the standard deviation of these measurements. Comparative transcriptomics identifies cyanobacterial stress response genes In an attempt to determine which genes are involved in general cyanobacterial stress responses, the differentially expressed genes for FFA production identified in this study were compared to differentially expressed genes from previ- ous studies investigating cyanobacterial stress responses. Specifically, Synechococcus sp. PCC 7002 transcriptome studies of temperature, oxidative, salt, and nutrient limita- tion (CO2, nitrogen, sulfur, phosphorous, and iron) stresses [25,26] were evaluated along with Synechocystis sp. PCC 6803 studies which analyzed transcriptional responses to temperature, oxidative, salt, osmotic, and ethanol stresses [27-34]. Homologous genes between S. elongatus PCC 7942, Synechococcus sp. PCC 7002, and Synechocystis sp. PCC 6803 were identified, as described in the Materials and Methods section, to facilitate the comparison. Many differ- entially expressed genes associated with FFA toxicity in S. elongatus PCC 7942 corresponded to homologs of differ- entially expressed genes in these previous stress studies (Additional file 2: Tables S3 and S4). Overall, the transcrip- tional response to FFA production in S. elongatus PCC 7942 was most similar to the heat stress response in Synechococcus sp. PCC 7002, with nearly 26% of the differ- entially transcribed genes associated with FFA toxicity hav- ing differentially expressed homologs in the heat stress study. Among the functional categories for differentially expressed genes, up-regulation of stress response and Page 11 of 15 Ruffing Biotechnology for Biofuels 2013, 6:113 http://www.biotechnologyforbiofuels.com/content/6/1/113 Ruffing Biotechnology for Biofuels 2013, 6:113 http://www.biotechnologyforbiofuels.com/content/6/1/113 Page 11 of 15 species that were differentially expressed under other stress conditions, with down-regulation in 8 and 5 of the other stress conditions, respectively. Therefore, Synpcc7942_1655 may be a unique stress response gene in S. elongatus PCC 7942 or perhaps a response specific to FFA production, while Synpcc7942_0122 and Synpcc7942_0900 are likely in- volved in general stress response. The two porin targets, Synpcc7942_1464 and Synpcc7942_1607, were also differ- ential expressed in the other cyanobacterial strains, showing up-regulation in 8 of the other stress conditions. The 9 genes identified through targeted mutagenesis and the 6 additional stress genes identified through this comparative transcriptomics analysis will be candidate targets for future improvement in cyanobacterial FFA production and general stress response. FFA toxicity via membrane intercalation. The processes and genes identified in this RNA-seq analysis are potential targets for improving the physiology of S. elongatus PCC 7942 during FFA production. Genetic targets for addressing FFA toxicity in FFA- producing S. Conclusions This study investigated two proposed mechanisms of FFA toxicity in cyanobacteria: UFA reactivity with ROS to pro- duce toxic compounds and the intercalation of FFAs in cellular membranes. Elevated ROS levels in FFA- producing strains of S. elongatus PCC 7942 confirmed the presence of intracellular ROS, and based on the known re- active properties of UFAs and ROS [35], UFA degradation is anticipated. However, the amount of UFA degradation is unknown as well as the degree to which the degradation products cause cellular damage. In addition, the experi- mental results suggest that ROS generation is itself a result of FFA production, as the wild type does not have elevated ROS levels. This indicates that another mechanism of FFA toxicity causes cellular stress, leading to ROS generation. The FFA-producing strains also have increased cell mem- brane permeability, providing evidence to support the mechanism of FFA intercalation. In agreement with this, previous biochemical and imaging experiments showed reduced photosynthetic yields and dissociation of PBSs from the thylakoid membranes [7]. While further explor- ation of these mechanisms is necessary, these preliminary results point to FFA intercalation as a primary mechanism of intracellular FFA toxicity. Comparative transcriptomics identifies cyanobacterial stress response genes elongatus PCC 7942 were identified from the RNA-seq analysis, targeted mutagenesis experi- ments, and comparative transcriptomics analysis. Differ- entially expressed hypothetical proteins, ROS-degrading proteins, and potential FFA transporters were targeted to generate 15 mutant strains. The overexpression of ROS- degrading proteins improved cell growth, physiology, and FFA production, presumably due to ROS degradation and the subsequent reduction in cellular damage. Gene knock- out of the two porin proteins (Synpcc7942_1464 and Synpcc7942_1607) improved FFA production and cellular physiology without significantly affecting cell growth. These porin proteins may therefore participate in FFA up- take rather than export. The overexpression of 3 hypothet- ical proteins (Synpcc7942_1655, Synpcc7942_0122, and Synpcc7942_0900) also improved cell growth, physiology, and FFA production. In addition to these genetic targets specific to FFA production, comparative transcriptomics of cyanobacterial stress responses identified potential tar- gets for improving cellular stress response in general. These conserved stress response targets include a high light-inducible protein (Synpcc7942_1997), a hypothetical protein (Synpcc7942_0551), heat shock protein Hsp20 (Synpcc7942_2401), NAD(P)H-quinone oxidoreductase subunit 4 (Synpcc7942_1439), RNA polymerase sigma fac- tor SigD (Synpcc7942_0672), and Beta-Ig-H3/fasciclin (Synpcc7942_1606). By targeting these stress response genes along with the targets confirmed in the targeted mutagenesis investigation, the physiological stress associ- ated with FFA toxicity may be alleviated in FFA-producing strains of S. elongatus PCC 7942. By overcoming the physiological effects of FFA production, higher FFA pro- ductivities may be attained, advancing the development of cyanobacterial based biofuels. Mutant strain construction From RNA-seq analysis of 7942, SE01, and SE02, gene tar- gets were identified as those being differentially expressed during FFA production with statistical significance among the biological replicates. Select genes were targeted for ei- ther gene knockout or gene overexpression in SE02. The knockout plasmid, pSK, was constructed from pSA, a plasmid previously used for gene expression and integra- tion into NSII of S. elongatus PCC 7942 [7]. The 5′ and 3′ NSII regions of pSA were removed sequentially by SacI and AvrII digestion and ligation to generate pSK. The knockout plasmids for each gene target were then constructed by inserting approximately 500 bp fragments of the 5′ upstream and 3′ downstream regions into the SacI and AvrII sites of pSK (see Additional file 3: Table S6 for primers). The subsequent knockout plasmids (Additional file 3: Table S5) were transformed into SE02 using the protocol described in [7]. Gene knockout was confirmed by PCR amplification of the target gene region using the 5′ forward and 3′ reverse primers (Additional file 3: Table S6). The pSA plasmid was used for gene overexpression and integration into NSII. The target genes were amplified using the primers listed in Additional file 3: Table S5 and inserted into the KpnI and AflIII sites of pSA. Successful cloning and integration of the target genes in the overexpression plasmid was confirmed using PCR with a forward primer homologous to the upstream pro- moter sequence of pSA (psacF, Additional file 3: Table S6) and the reverse primer of the target gene. The overexpression plasmids were transformed into SE02 using the protocol outlined in [7], and successful integra- tion was confirmed by amplification of NSII (NSII5F/ NSII3R) and the promoter-gene fragment (psacF/geneR) (Additional file 3: Table S6). In total, 7 knockout muta- nts and 10 overexpression mutants were constructed (Additional file 3: Table S5). SE02a was constructed as the control strain by inserting the empty vector, pSA, into the NSII site of SE02. The large-scale FFA production experiments were used for obtaining samples for RNA-seq analysis. For these experiments, a second inoculum was prepared by adding 1 mL of the test tube inoculum to a 500 mL baf- fled Erlenmeyer flask containing 100 mL of BG-11 medium and antibiotics as appropriate. These larger in- oculums were grown for approximately 4 days under the aforementioned growth conditions. Cultivation conditions All i All strains were grown at 30 °C with shaking at 150 rpm and approximately 60 μmol photons m-2 s-1 illumination from alternating cool white and plant fluorescent lights. Cells were transferred from BG-11/agar plates, supple- mented with antibiotics (40 μg/mL spectinomycin dihydrochloride pentahydrate (Sp) and 50 μg/mL kana- mycin monosulfate (Km)) as appropriate, to test tubes containing 4 mL of liquid media. After 5 to 7 days of growth, these test tube cultures were used as inoculums for both the large-scale FFA production experiments and the small-scale mutant screening experiments. Materials and methods Materials and strains Through examining the transcriptional response of S. elongatus PCC 7942 to FFA production, natural mecha- nisms for alleviating FFA toxicity were identified. These mechanisms included the activation of genes contributing to general stress response, nitrogen metabolism, PSII photosynthesis, and protein folding as well as repression of genes involved in PSI photosynthesis and carbon and hydrogen metabolisms. Many of these cellular responses were expected, as they agree with the ‘core transcriptional response’ (CTR) genes determined for stress response in Synechocystis sp. PCC 6803 [36]. The differential expres- sion of genes affecting electron transport, including PSI and PSII genes along with hydrogenase associated genes, provides additional evidence supporting the mechanism of Chemicals used in this study were purchased from Sigma- Aldrich (spectinomycin dihydrochloride pentahydrate and 2′,7′-dichlorodihydrofluorescein diacetate (H2DCFDA), MP Biomedicals (ferric ammonium citrate, zinc sulfate heptahydrate, and cupric sulfate pentahydrate), Acros Or- ganics (sodium molybdate(VI) dihydrate and cobalt(II) ni- trate hexahydrate), Gold Biotechnology (isopropyl-β-D- thiogalactopyranoside: IPTG), Invitrogen/Life Technolo- gies (SYTOX) and Fisher Scientific (all other chemicals). DNA purification kits used in strain construction include the Zyppy Plasmid Miniprep Kit and Zymoclean Gel DNA Recovery Kit (Zymo Research Corporation). Enzymes used Ruffing Biotechnology for Biofuels 2013, 6:113 http://www.biotechnologyforbiofuels.com/content/6/1/113 Page 12 of 15 Ruffing Biotechnology for Biofuels 2013, 6:113 http://www.biotechnologyforbiofuels.com/content/6/1/113 Page 12 of 15 mutant strains SB2632#1 and S1476#1 have only 2 bio- logical replicates, and SB2632#2 and S1656#2 mutant strains have only 1 biological replicate for the relative cell concentration and relative extracellular FFA concentration measurements. in cloning include DNA polymerases (Taq, LongAmp Taq, and Phusion High-Fidelity), restriction enzymes, and T4 DNA ligase from New England Biolabs. Primers were syn- thesized by Integrated DNA Technologies. Kits for FFA quantification and RNA isolation are described below. All strains and plasmids used in this study are listed in Additional file 3: Table S5. RNA preparation, library construction, and cDNA sequencing RNA was extracted from 50 mL of culture using the protocol described in [15]. RNA concentration was mea- sured in diluted RNA samples using the Quant-iT RiboGreen RNA Reagent and Kit (Invitrogen/Life Tech- nologies), and RNA quality was assessed using an RNA 6000 Nano Kit (Agilent) and an Agilent 2100 Bioanalyzer. The Ribo-Zero rRNA Removal Kit for Gram-Negative Bacteria (Epicentre) was used to reduce the amount of ribosomal RNA (rRNA) in each sample, and the rRNA- depleted samples were purified using the RNA Clean & Concentrator – 25 Kit from Zymo Research. RNA concen- tration and quality were assessed again after rRNA re- moval. The RNA samples were stored at −80°C and sent to Los Alamos National Laboratory for library construc- tion and cDNA sequencing. TruSeq RNA Sample Prepar- ation Kits (Illumina) were used for library construction, and the libraries were sequenced using the Illumina HiSeq 2000. A total of 17 samples were analyzed across 3 lanes of the HiSeq 2000. This includes 3 strains (7942, SE01, SE02) at 2 different time points (day 4 and day 12) with 3 biological replicates. One replicate sample for the SE02 strain at 100 h was eliminated due to low RNA yields after rRNA removal. Single-cell analysis was used to measure the levels of ROS and cell membrane permeability in each culture. For ROS analysis, 0.5 mL of culture was mixed with H2DCFDA at a final concentration of 350 μM with 10 μL of dimethyl sulfoxide (DMSO) to permeabilize the cell membrane for dye uptake. The mixture was incubated under culture conditions for 1 hour to allow for dye diffu- sion and ROS-mediated activation. The culture was di- luted and analyzed using an Accuri C6 flow cytometer. For each measurement, 20,000 cells were analyzed, and cells with an increased fluorescence emission at 533 nm were determined to be positive for ROS. To measure cell membrane permeability, SYTOX Green Nucleic Acid Stain (Invitrogen/Life Technologies) was added to 0.3 mL culture samples to a final concentration of 300 nM. After 20 min of incubation in the dark at room temperature, the dyed cultures were analyzed using flow cytometry. Ap- proximately 20,000 cells were measured for fluorescence emission at 533 nm, and an increase in fluorescence inten- sity at this wavelength was indicative of positive SYTOX staining (i.e. membrane permeable cells). Mutant strain construction These cultures were added to 1 L media bottles containing 400 mL of BG-11 media so that the optical density at 730 nm (OD730) was approximately 0.15. No antibiotics were added to the final experimental cultures to reduce any effects of the antibiotics on the experimental results. The large-scale cultures were grown under the previously described con- ditions and bubbled with air and 1% CO2. Additional setup information can be found in [7]. Thioesterase (‘tesA) expression was induced by the addition of 0.1 M isopropyl β-D-1-thiogalactopyranoside (IPTG) to a final concentration of 1 mM after approximately 4 days of growth. Samples were taken every 2 days for analysis of growth (OD730), photosynthetic yield (Fv’/Fm’), and FFA concentration. Every 4 days, samples were taken for measurement of ROS levels and cell membrane perme- ability. Samples for RNA-seq analysis were taken before induction (day 4) and 8 days after induction (day 12). Three biological replicates were performed for each large-scale experiment. Small-scale experiments were conducted to screen the 7 knockout and 10 overexpression mutants. For each mutant strain, two transformed colonies were selected for screening to account for possible variation among the transformants. This was particularly important for the overexpression mutants, which may have tested posi- tive for PCR amplification of the inserted gene but could have had a mutation effecting gene expression. For the small-scale screening experiments, 1 mL of the test tube Strain stability was an issue for several of the mutant strains. Specifically, the hypothetical protein overexpression mutants SB2632#1, SB2632#2, and S1476#1 and the ROS- degrading protein overexpression mutant S1656#2 showed reduced viability after sub-culturing. With repeated rounds of sub-culturing on solid media, these mutant strains had reduced colony growth, and following 3 to 4 rounds of re- plating, these strains were no longer viable. As a result, the Page 13 of 15 Ruffing Biotechnology for Biofuels 2013, 6:113 http://www.biotechnologyforbiofuels.com/content/6/1/113 Ruffing Biotechnology for Biofuels 2013, 6:113 http://www.biotechnologyforbiofuels.com/content/6/1/113 significant variation between the control strain SE02a and the targeted mutants, two-factor ANOVA analyses with replicates were performed for relative OD730 mea- surements (days 7 – 19) and relative FFA concentration (days 10 – 19). For the photosynthetic yield data, single factor ANOVA analyses were applied to the measure- ments from day 7, comparing the control (SE02a#1 and SE02a#3) and mutant data. Physiological measurements Bulk spectroscopic measurements were taken to assess cell growth, photosynthetic yield, and extracellular FFA concentration. Cell growth was estimated by measuring the optical density at 730 nm (OD730) using a PerkinElmer Lambda Bio spectrophotometer. A linear calibration curve relating OD730 and gDCW was obtained previously [7]. Photosynthetic yield was measured using a Waltz MINI- PAM Photosynthetic Yield Analyzer, and the reported Fv’/ Fm’ values are averages of 3 technical replicate measure- ments. To measure extracellular FFA concentration, 0.5 mL of culture was centrifuged at 5000 x g for 3 min. The supernatant was transferred to a new tube and fro- zen at −20 °C until analysis. FFA concentration was ana- lyzed using the Free Fatty Acid Quantification Kit from Biovision, as described previously [7]. Mutant strain construction Mutant strains with statisti- cally significant (p < 0.05) changes relative to the control are indicated in Figures 2 and 3. The calculated p-values from the ANOVA analyses are listed in Table S7 (Additional file 3). The ANOVA analyses were con- ducted using the Analysis TookPak add-in in Microsoft Office Excel 2010. inoculum was added to 25 mL of BG-11 medium in a 125 mL baffled Erlenmeyer flask. After 4 days of growth, cultures were induced by adding IPTG to a final concen- tration of 1 mM. Samples were taken every 3 days to measure growth (OD730), photosynthetic yield (Fv’/Fm’), and FFA concentration. Three biological replicates were performed for each small-scale experiment. RNA preparation, library construction, and cDNA sequencing Both ROS detec- tion and cell membrane permeability are reported as the percentage of the cell population with positive staining. RNA-seq data analysis A total of 524 million reads corresponding to 52.9 billion bases of sequence data were generated from the 17 RNA samples. After sequencing, the de-multiplexed data files for each sample were analyzed using FastQC v 0.10.1 [37]. The average Phred quality score per read was 36, indicating high sequence quality. The quality check also revealed several issues with the read data which were addressed by additional data processing steps. First, adapter sequences were found to be prevalent among the sample reads, despite the fact that data had been de- multiplexed using the Illumina software. Cutadapt 1.0 [38] was used to remove these persistent adapter Statistical data analyses for each reference using either supplemental material or tables provided in the publications [25-33,43]. These dif- ferentially expressed genes were compared to the list of differentially expressed genes in S. elongatus PCC 7942 during FFA toxicity (determined in this study) using the list of homologs generated from MBGD and a Perl script generated for this comparison. sequences and to remove nucleotides with low quality scores (phred < 20). FastQC also identified an abundance of polyA/T sequences at the read ends. These polyA tails may be indicative of a cyanobacterial mechanism for transcript degradation [39]. Therefore, terminal polyA/T sequences were removed from the reads using Prinseq [40] to improve read alignment. Prinseq was also used to remove any reads less than 20 nucleotides. Bowtie v 0.12.7 [41] was used to align the reads to the S. elongatus PCC 7942 genome index. The genome index was constructed using 3 NCBI files: NC_007604.fna for the S. elongatus PCC 7942 chromosome, NC_007595.fna for plasmid 1, and NC_004990.fna for pUH24. If the Bowtie alignment was restricted to only uniquely mapped reads (i. e. any read aligning to more than one region of the gen- ome is discarded), there was a significant reduction in the number of aligned reads, with more than 96% of the total reads being discarded in the most severely affected sample. As a result, the best alignment for each read was selected, and no reads were discarded due to multiple alignments to the reference genome. The SAM files constructed by Bowtie were submitted to HTSeq v. 0.5.3p3 to obtain raw counts for each predicted gene feature in the S. elongatus PCC 7942 genome. Raw counts for each sample are shown in Additional file 4. These feature counts were then ana- lyzed by EdgeR for differential gene expression analysis. EdgeR includes 3 normalization methods: weighted trimmed mean of M-values (TMM), relative log expres- sion (RLE), and upperquartile normalization [42]. All three normalization methods were applied separately, and the results for each gene feature were combined and averaged. There was good agreement of the differentially expressed genes between the three methods of normalization. EdgeR uses Fisher’s exact test to compute p-values for the calcu- lated fold changes. Fold changes with p-values < 0.05 were considered to be statistically significant. Raw and processed data from this RNA-seq study was deposited in Gene Expression Omnibus (Accession #: GSE45762). Acknowledgements This work was supported by the Harry S. Truman Fellowship in National Security Science and Engineering and the Laboratory Directed Research and Development program. Sandia is a multi-program laboratory operated by Sandia Corporation, a Lockheed Martin Company, for the United States Department of Energy under Contract DE-ACO4-94AL85000. Next-gen sequencing for the RNA-seq analysis was performed at Los Alamos National Laboratory. The author is grateful to Dr. James Laio (University of California, Los Angeles) and Dr. Susan Golden (University of California, San Diego) for providing plasmids pSA126 and pAM2991. The author would also like to acknowledge Bryan Carson for the use of laboratory equipment. Received: 25 April 2013 Accepted: 25 July 2013 Published: 6 August 2013 Statistical data analyses To determine the statistical significance of the relation- ships between measured variables, a single factor ANOVA was performed. The resulting p-values are reported in the text along with the R2 value associated with a linear regression analysis. To confirm statistically Ruffing Biotechnology for Biofuels 2013, 6:113 http://www.biotechnologyforbiofuels.com/content/6/1/113 Ruffing Biotechnology for Biofuels 2013, 6:113 http://www.biotechnologyforbiofuels.com/content/6/1/113 Page 14 of 15 Page 14 of 15 sequences and to remove nucleotides with low quality scores (phred < 20). FastQC also identified an abundance of polyA/T sequences at the read ends. These polyA tails may be indicative of a cyanobacterial mechanism for transcript degradation [39]. Therefore, terminal polyA/T sequences were removed from the reads using Prinseq [40] to improve read alignment. Prinseq was also used to remove any reads less than 20 nucleotides. Bowtie v 0.12.7 [41] was used to align the reads to the S. elongatus PCC 7942 genome index. The genome index was constructed using 3 NCBI files: NC_007604.fna for the S. elongatus PCC 7942 chromosome, NC_007595.fna for plasmid 1, and NC_004990.fna for pUH24. If the Bowtie alignment was restricted to only uniquely mapped reads (i. e. any read aligning to more than one region of the gen- ome is discarded), there was a significant reduction in the number of aligned reads, with more than 96% of the total reads being discarded in the most severely affected sample. As a result, the best alignment for each read was selected, and no reads were discarded due to multiple alignments to the reference genome. The SAM files constructed by Bowtie were submitted to HTSeq v. 0.5.3p3 to obtain raw counts for each predicted gene feature in the S. elongatus PCC 7942 genome. Raw counts for each sample are shown in Additional file 4. These feature counts were then ana- lyzed by EdgeR for differential gene expression analysis. EdgeR includes 3 normalization methods: weighted trimmed mean of M-values (TMM), relative log expres- sion (RLE), and upperquartile normalization [42]. All three normalization methods were applied separately, and the results for each gene feature were combined and averaged. There was good agreement of the differentially expressed genes between the three methods of normalization. EdgeR uses Fisher’s exact test to compute p-values for the calcu- lated fold changes. Fold changes with p-values < 0.05 were considered to be statistically significant. Raw and processed data from this RNA-seq study was deposited in Gene Expression Omnibus (Accession #: GSE45762). Comparative transcriptomics ff ll d Differentially expressed genes associated only with comparison F were excluded from the compara- tive transcriptomics analysis. Comparison F (SE02 – 240 h:100 h) includes an increase in extracellular FFA concentration but no change in FFA concentration on a per cell weight basis. Furthermore, the differentially expressed genes identified in comparison F suggest a reduction in cellular stress levels, contrary to the other 5 comparisons. These reasons justify the exclusion of comparison F. The Microbial Genome Database (MBGD) for Comparative Analysis was used to identify homologs among the three cyanobacterial species: S. elongatus PCC 7942, Synechococcus sp. PCC 7002, and Synechocystis sp. PCC 6803. Differential gene expression data were obtained Additional files The following additional data files are available with the online version of this paper. Additional file 1: Table S1. Listing the genes up-regulated during FFA production. Table S2, listing the genes down-regulated during FFA production. Additional file 1: Table S1. Listing the genes up-regulated during FFA production. Table S2, listing the genes down-regulated during FFA production. Additional file 2: Table S3. Listing the up-regulated genes from the comparative transcriptomics analysis. Table S4, listing the down- regulated genes from the comparative transcriptomics analysis. Additional file 3: Table S5. Listing the strains and plasmids used in this study. Table S6, listing the primers used in this study. Table S7, listing the p-values for the ANOVA analyses. Additional file 3: Table S5. Listing the strains and plasmids used in this study. Table S6, listing the primers used in this study. Table S7, listing the p-values for the ANOVA analyses. Additional file 4: Contains the raw counts for each biological sample analyzed using RNA-seq. Abbreviations ACP: Acyl carrier protein; c-di-GMP: Cyclic-di-guanosylmonophsophate; CoA: Coenzyme A; FC: Fold change; FFA: Free fatty acid; gDCW: Grams of dry cell weight; IPTG: Isopropyl β-D-1-thiogalactopyranoside; Km: Kanamycin monosulfate; MBGD: Microbial genome database; NAD(P)H: Nicotinamide adenine dinucleotide phosphate; NSII: Neutral integration site II; PBS: Phycobilisome; PCR: Polymerase chain reaction; ACP: Acyl carrier protein; c-di-GMP: Cyclic-di-guanosylmonophsophate; CoA: Coenzyme A; FC: Fold change; FFA: Free fatty acid; gDCW: Grams of dry cell weight; IPTG: Isopropyl β-D-1-thiogalactopyranoside; Km: Kanamycin monosulfate; MBGD: Microbial genome database; NAD(P)H: Nicotinamide adenine dinucleotide phosphate; NSII: Neutral integration site II; PBS: Phycobilisome; PCR: Polymerase chain reaction; PEP: Phosphoenolpyruvate; PSI: Photosystem I; PSII: Photosystem II; PUFA: Polyunsaturated fatty acid; RNA: Ribonucleic acid; ROS: Reactive oxygen species; RuBisCO: Ribulose-1,5-bisphosphate carboxylase/oxygenase; SE: Standard error; SFA: Saturated fatty acid; Sp: Spectinomycin dihydrochloride pentahydrate; UFA: Unsaturated fatty acid. Competing interests h h d l h The author declares that she has no competing interests. Authors’ contributions AMR conceived of the study, carried out the physiological studies, conducted the experiments for RNA sampling and isolation, processed and analyzed the RNA-seq data, constructed and tested the mutant strains, performed the comparative transcriptomics, interpreted the data, and drafted the manuscript. Ohlrogge JB, Jaworski JG: Regulation of fatty acid synthesis. Ann Rev Plant Physiol Plant Mol Biol 1997, 48:109–136. References Desbois A, Smith V: Antibacterial free fatty acids: Activities, mechanisms of action and biotechnological potential. Appl Microbiol Biotechnol 2010, 85:1629–1642. 33. Suzuki I, Kanesaki Y, Mikami K, Kanehisa M, Murata N: Cold-regulated genes under control of the cold sensor Hik33 in Synechocystis. Mol Microbiol 2001, 40:235–244. y of action and biotechnological potential. Appl Microbiol Biotechnol 2010, 85:1629–1642. 9. Wu J-T, Chiang Y-R, Huang W-Y, Jane W-N: Cytotoxic effects of free fatty acids on phytoplankton algae and cyanobacteria. Aquat Toxicol 2006, 80:338–345. 34. Wang J, Chen L, Huang S, Liu J, Ren X, Tian X, Qiao J, Zhang W: RNA-seq based identification and mutant validation of gene targets related to ethanol resistance in cyanobacterial Synechocystis sp. PCC 6803. Biotechnol Biofuels 2012, 5:89. 10. Apel K, Hirt H: Reactive oxygen species: metabolism, oxidative stress, and signal transduction. Annu Rev Plant Biol 2004, 55:373–399. 35. Bielski BH, Arudi RL, Sutherland MW: A study of the reactivity of HO2/O2- with unsaturated fatty acids. J Biol Chem 1983, 258:4759–4761. 11. Storz G, Hengge R: Bacterial stress responses. Washington: ASM Press; 2011. 11. Storz G, Hengge R: Bacterial stress responses. Washington: ASM Press; 2011. 12. Pohnert G: Diatom/copepod interactions in plankton: The indirect 11. Storz G, Hengge R: Bacterial stress responses. Washington: ASM Press; 2011. 12. Pohnert G: Diatom/copepod interactions in plankton: The indirect chemical defense of unicellular algae ChemBioChem 2005 6:946–959 12. Pohnert G: Diatom/copepod interactions in plankton: The indirect chemical defense of unicellular algae. ChemBioChem 2005, 6:946–959. 12. Pohnert G: Diatom/copepod interactions in plankton: The indirect chemical defense of unicellular algae. ChemBioChem 2005, 6:946–959. 36. Singh A, Elvitigala T, Cameron J, Ghosh B, Bhattacharyya-Pakrasi M, Pakrasi H: Integrative analysis of large scale expression profiles reveals core transcriptional response and coordination between multiple cellular processes in a cyanobacterium. BMC Syst Biol 2010, 4:105. 13. He Q, Dolganov N, Björkman O, Grossman AR: The high light-inducible polypeptides in synechocystis PCC6803: expression and function in high light. J Biol Chem 2001, 276:306–314. 37. Babraham Bioinformatics: FASTQC: A quality control tool for high throughput sequence data. Cambridge, UK: Babraham Institute; 2011. http://www. bioinformatics.babraham.ac.uk/projects/fastqc/. 14. Hirschberg J, Chamovitz D: Carotenoids in Cyanobacteria. In The Molecular Biology of Cyanobacteria. Volume 1. Edited by Bryant D. Netherlands: Springer; 2004:559–579. Advances in Photosynthesis and Respiration. 38. Martin M: Cutadapt removes adapter sequences from high-throughput sequencing reads. EMBnetjournal 2011, 17:10–12. 15. References Ruffing AM: Borrowing genes from Chlamydomonas reinhardtii for free fatty acid production in engineered cyanobacteria. Journal of Applied Phycology 2013. doi:10.1007/s10811-013-9993-7. Available Online. 39. Rott R, Zipor G, Portnoy V, Liveanu V, Schuster G: RNA polyadenylation and degradation in cyanobacteria are similar to the chloroplast but different from Escherichia coli. J Biol Chem 2003, 278:15771–15777. 16. Mary I, Tu C-J, Grossman A, Vaulot D: Effects of high light on transcripts of stress-associated genes for the cyanobacteria Synechocystis sp. PCC 6803 and Prochlorococcus MED4 and MIT9313. Microbiology 2004, 150:1271–1281. 40. Schmieder R, Edwards R: Quality control and preprocessing of metagenomic datasets. Bioinformatics 2011, 27:863–864. metagenomic datasets. Bioinformatics 2011, 27:863–864. 41. Langmead B, Trapnell C, Pop M, Salzberg S: Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol 2009, 10:R25. 17. Webb R, Reddy KJ, Sherman LA: Regulation and sequence of the Synechococcus sp. strain PCC 7942 groESL operon, encoding a cyanobacterial chaperonin. J Bacteriol 1990, 172:5079–5088. 42. Robinson MD, McCarthy DJ, Smyth GK: edgeR: a Bioconductor package for differential expression analysis of digital gene expression data. Bioinformatics 2010, 26:139–140. 42. Robinson MD, McCarthy DJ, Smyth GK: edgeR: a Bioconductor package for differential expression analysis of digital gene expression data. Bioinformatics 2010, 26:139–140. 18. Yoshimura T, Imamura S, Tanaka K, Shirai M, Asayama M: Cooperation of group 2 σ factors, SigD and SigE for light-induced transcription in the cyanobacterium Synechocystis sp. PCC 6803. FEBS Letters 2007, 581:1495–1500. 43. Mikami K, Kanesaki Y, Suzuki I, Murata N: The histidine kinase Hik33 perceives osmotic stress and cold stress in Synechocystis sp. PCC 6803. Mol Microbiol 2002, 46:905–915. 19. Lennen RM, Politz MG, Kruziki MA, Pfleger BF: Identification of transport proteins involved in free fatty acid efflux in Escherichia coli. J Bacteriol 2013, 195:135–144. 20. Li J, Goldschmidt-Clermont M, Timko MP: Chloroplast-encoded chlB is required for light-independent protochlorophyllide reductase activity in Chlamydomonas reinhardtii. The Plant Cell Online 1993, 5:1817–1829. doi:10.1186/1754-6834-6-113 Cite this article as: Ruffing: RNA-Seq analysis and targeted mutagenesis for improved free fatty acid production in an engineered cyanobacterium. Biotechnology for Biofuels 2013 6:113. 21. MacColl R: Cyanobacterial phycobilisomes. J Struct Biol 1998, 124:311–334. 22. Dutta D, De D, Chaudhuri S, Bhattacharya S: Hydrogen production by cyanobacteria. Microb Cell Fact 2005, 4:36. 23. Schmitz O, Boison G, Bothe H: Quantitative analysis of expression of two circadian clock-controlled gene clusters coding for the bidirectional hydrogenase in the cyanobacterium Synechococcus sp. References Ohlrogge JB, Jaworski JG: Regulation of fatty acid synthesis. Ann Rev Plant Physiol Plant Mol Biol 1997, 48:109–136. Page 15 of 15 Page 15 of 15 Ruffing Biotechnology for Biofuels 2013, 6:113 http://www.biotechnologyforbiofuels.com/content/6/1/113 2. Kaczmarzyk D, Fulda M: Fatty acid activation in cyanobacteria mediated by acyl-acyl carrier protein synthetase enables fatty acid recycling. Plant Physiology 2010, 152:1598–1610. 28. Kanesaki Y, Suzuki I, Allakhverdiev SI, Mikami K, Murata N: Salt stress and hyperosmotic stress regulate the expression of different sets of genes in Synechocystis sp. PCC 6803. Biochem Biophys Res Commun 2002, 290:339–348. 3. Michinaka Y, Shimauchi T, Aki T, Nakajima T, Kawamoto S, Shigeta S, Suzuki O, Ono K: extracellular secretion of free fatty acids by disruption of a fatty Acyl-CoA synthetase gene in Saccharomyces cerevisiae. J Biosci Bioeng 2003, 95:435–440. 29. Kobayashi M, Ishizuka T, Katayama M, Kanehisa M, Bhattacharyya-Pakrasi M, Pakrasi HB, Ikeuchi M: Response to oxidative stress involves a novel peroxiredoxin gene in the unicellular cyanobacterium Synechocystis sp. PCC 6803. Plant Cell Physiol 2004, 45:290–299. 30. Li H, Singh AK, McIntyre LM, Sherman LA: Differential gene expression in response to hydrogen peroxide and the putative PerR regulon of Synechocystis sp. strain PCC 6803. J Bacteriol 2004, 186:3331–3345. 4. Lam MK, Lee KT, Mohamed AR: Homogeneous, heterogeneous and enzymatic catalysis for transesterification of high free fatty acid oil (waste cooking oil) to biodiesel: A review. Biotechnol Adv 2010, 28:500–518. g 5. Lu X, Vora H, Khosla C: Overproduction of free fatty acids in E. Coli: implications for biodiesel production. Metab Eng 2008, 10:333–339. Lu X, Vora H, Khosla C: Overproduction of free fatty acids in E. Co 31. Marin K, Stirnberg M, Eisenhut M, Krämer R, Hagemann M: Osmotic stress in Synechocystis sp. PCC 6803: low tolerance towards nonionic osmotic stress results from lacking activation of glucosylglycerol accumulation. Microbiol 2006, 152:2023–2030. 6. Liu X, Sheng J, Curtiss R III: Fatty acid production in genetically modified cyanobacteria. Proc Natl Acad Sci 2011, 108:6899–6904. cyanobacteria. Proc Natl Acad Sci 2011, 108:6899–6904. 32. Suzuki I, Kanesaki Y, Hayashi H, Hall JJ, Simon WJ, Slabas AR, Murata N: The histidine kinase Hik34 is involved in thermotolerance by regulating the expression of heat shock genes in Synechocystis. Plant Physiol 2005, 138:1409–1421. 7. Ruffing AM, Jones HDT: Physiological effects of free fatty acid production in genetically engineered Synechococcus elongatus PCC 7942. Biotechnol Bioeng 2012, 109:2190–2199. 8. References PCC7942. Mol Microbiol 2001, 41:1409–1417. Submit your next manuscript to BioMed Central and take full advantage of: • Convenient online submission • Thorough peer review • No space constraints or color figure charges • Immediate publication on acceptance • Inclusion in PubMed, CAS, Scopus and Google Scholar • Research which is freely available for redistribution Submit your manuscript at www.biomedcentral.com/submit Submit your next manuscript to BioMed Central and take full advantage of: • Convenient online submission • Thorough peer review • No space constraints or color figure charges • Immediate publication on acceptance • Inclusion in PubMed, CAS, Scopus and Google Scholar • Research which is freely available for redistribution Submit your manuscript at www.biomedcentral.com/submit Submit your next manuscript to BioMed Central and take full advantage of: Submit your next manuscript to BioMed Central and take full advantage of: Submit your next manuscript to BioMed Central and take full advantage of: • Convenient online submission • Thorough peer review • No space constraints or color figure charges • Immediate publication on acceptance • Inclusion in PubMed, CAS, Scopus and Google Scholar • Research which is freely available for redistribution Submit your manuscript at www.biomedcentral.com/submit 24. Römling U, Gomelsky M, Galperin MY: C-di-GMP: the dawning of a novel bacterial signalling system. Mol Microbiol 2005, 57:629–639. • Convenient online submission • Thorough peer review 25. Ludwig M, Bryant DA: Synechococcus sp. strain PCC 7002 transcriptome: acclimation to temperature, salinity, oxidative stress and mixotrophic growth conditions. Front Microbiol 2012, 3:1–14. 26. Ludwig M, Bryant DA: Acclimation of the global transcriptome of the cyanobacterium Synechococcus sp. strain PCC 7002 to nutrient limitations and different nitrogen sources. Front Microbiol 2012, 3:1–15. 26. Ludwig M, Bryant DA: Acclimation of the global transcriptome of the cyanobacterium Synechococcus sp. strain PCC 7002 to nutrient limitations and different nitrogen sources. Front Microbiol 2012, 3:1–15. 27. Hihara Y, Kamei A, Kanehisa M, Kaplan A, Ikeuchi M: DNA microarray analysis of cyanobacterial gene expression during acclimation to high light. Plant Cell Online 2001, 13:793–806. 27. Hihara Y, Kamei A, Kanehisa M, Kaplan A, Ikeuchi M: DNA microarray analysis of cyanobacterial gene expression during acclimation to high light. Plant Cell Online 2001, 13:793–806.
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Problemática socioambiental de las lomas costeras de Lima: una revisión
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PROBLEMÁTICA SOCIOAMBIENTAL DE LAS LOMAS costeras de Lima: una revisión Socioenvironmental problems of the coastal hills of Lima: a review Carlos Alberto Alonso Quispe1 calonso1000@gmail.com ORCID: https://orcid.org/0000-0002-3749-2366 RECIBIDO ACEPTADO PUBLICADO Rosa Jesús Solórzano2 Pág. 18 - 28 [22/02/2021] [16/03/2021] [30/04/2021] ARTÍCULOS DE INVESTIGACIÓN rosa.jesus.s@upch.pe ORCID: https://orcid.org/0000-0003-2338-0272 Economista por la Universidad Nacional del Callao. Especialidad en Gestión Pública por la Universidad Continental. 1 Bachiller en Biología por la Universidad Peruana Cayetano Heredia. 2 RESUMEN El presente trabajo tiene como objetivo identificar y desarrollar los principales problemas socioambientales que aquejan a las lomas costeras de Lima, con la finalidad de generar información para luego plantear estrategias de mejora del estado de las lomas en la región, las cuales son un importante ecosistema propio de América del Sur, hábitat de muchas especies endémicas de importancia cultural para la ciudad, como la Ismene amancaes. Si bien es un tema que lleva muchos años haciéndose público a través de medios de comunicación, aún no se toma la importancia debida del caso y eso se refleja en la poca cantidad de documentación científica publicada. Por ello, se decidió consultar diversas plataformas de revistas indexadas, tales como ScienceDirect, Wos, Scielo y Dialnet, en el rango que va de los años 2008 a 2021; además, también se revisaron documentos publicados por entidades del Estado, como Serfor y Minam, encontrando que las principales problemáticas radican en la expansión urbana, el sobrepastoreo, la extracción de uso de suelo y la contaminación ambiental, descritas a lo largo del artículo. Además, se revisaron las actuales soluciones, como la intervención del Estado, la formación de asociaciones voluntarias para el cuidado de lomas o actuales proyectos de entidades como PNUD. 18 REVISTA DE CIENCIAS SOCIALES Vol. 2, N.º 2, enero - abril 2021 Palabras clave Lomas de Lima, Problemática, Urbanización, Contaminación, Sobrepastoreo, Sociedad Civil. ABSTRACT ARTÍCULOS DE INVESTIGACIÓN The purpose of this study is to identify and develop the main socio-environmental problems affecting the coastal hills of Lima, in order to generate information and then propose strategies to improve the state of the hills in the region, which are an important ecosystem in South America, habitat of many endemic species of cultural importance to the city, such as the Ismene amancaes. Although it is an issue that has been made public for many years through the media, it has not yet been given due importance and this is reflected in the small amount of scientific documentation published. Therefore, it was decided to consult various platforms of indexed journals, such as ScienceDirect, Wos, Scielo and Dialnet, in the range from 2008 to 2021; in addition, documents published by state entities, such as Serfor and Minam, were also reviewed, finding that the main problems lie in urban expansion, overgrazing, extraction of land use and environmental pollution, described throughout the article. In addition, the current solutions were reviewed, such as the intervention of the State, the formation of voluntary associations for the care of the hills or current projects of entities such as UNDP. Keywords Lomas de Lima, Problem, Urbanization, Contamination, Overgrazing, Civil Society. INTRODUCCIÓN Las lomas son ecosistemas únicos, muy singulares en el mundo y característicos del desierto Pacífico, que se extiende desde Illescas (departamento de Piura, a 6° L.S.) hasta el norte de Chile (30º L. S.) (Rundel et al., 1991). Se caracterizan por poseer un entorno árido, que se debe a la sinergia de tres anomalías: la Corriente de Humboldt, el Anticiclón del Pacífico y la Cordillera de los Andes (Castañeda, 2018; Kalicki y Kalicki, 2020). Esta combinación de factores ya mencionados produce un clima estable y uniforme, con presencia de neblinas, que es interceptado por estribaciones andinas, generando zonas de alta humedad que permiten el desarrollo de formaciones vegetales llamadas lomas 19 (Nieuwland y Mamani, 2017). Las lomas se asientan sobre las laderas orientadas hacia el mar hasta los 1000 m s. n. m. con variaciones locales, a una mayor altitud la vegetación desaparece gradualmente, debido al cese de la neblina producto de la inversión térmica (Madrid y Cabanillas, 2020). ARTÍCULOS DE INVESTIGACIÓN Estos ecosistemas presentan estaciones bien marcadas, la época de invierno se da de mayo a octubre, debido a la condensación de fuertes neblinas, esta época se caracteriza por la presencia de lluvia fina, con valores de 40 a 100 mm/año (Municipalidad Metropolitana de Lima, 2014); asimismo, la humedad relativa se encuentra entre un 80 a 100 %; y la estación seca se da entre diciembre y marzo con una temperatura por encima de 25 °C (Gamboa, 2019). Estos ecosistemas se caracterizan por presentar una marcada sucesión en el desarrollo de la vegetación, debido a la fuerte variación estacional (Minam, 2013). La flora vascular y la fauna son diversas y están caracterizadas por poseer un alto número de especies endémicas, debido al aislamiento geográfico. El 42 % de su flora está conformada por especies endémicas (Sotomayor y Jiménez, 2008). Por ejemplo, la muy conocida flor de Amancaes o “flor de Lima” Ismene amancaes (Coronel, 2017). La mayoría de las especies de flora posee una extraordinaria capacidad de supervivencia, cuyas semillas conservan su poder germinativo durante años a pesar de ser sometidas a condiciones adversas del entorno. A su vez, las especies de fauna que habitan estos lugares tienen características metabólicas especiales, que les permiten sobrevivir en condiciones extremas, como la poca disponibilidad de agua, alimento y temperaturas muy altas durante la estación seca (Gamboa, 2019). Una de las grandes contribuciones que ofrece este ecosistema son los servicios 20 ecosistémicos de provisión, regulación, de recreación y cultural (PNUD, 2018). Por ejemplo, durante el invierno reverdecen y fijan carbono de la atmósfera, la disponibilidad de agua para diversos usos, a través de la captación de neblina (Gamboa, 2019). Este ecosistema contempla recursos fitogenéticos que sirven de base biológica de la seguridad alimentaria (Minam, 2017). Sin embargo, estos ecosistemas presentan una gran vulnerabilidad, debido a la afectación de las actividades antrópicas, tales como la expansión urbana, el sobrepastoreo, la extracción insostenible de recursos, la contaminación ambiental y el mal manejo del turismo local (Tabla 1). En el marco de la Ley N.º 28611, Ley General del Medioambiente, se considera a las lomas como ecosistemas endémicos y algunas de ellas integran la lista nacional de ecosistemas frágiles. A lo largo de la costa peruana, existen 67 lomas que abarcan 783 mil hectáreas que comprende planicies y partes bajas de los valles costeros. En la costa norte hay 9, en la costa central 23 y en la costa sur 35 (Romero et al., 2018). Dentro de Lima se extienden alrededor de toda la ciudad (Fig.1). En este trabajo se explora la literatura científica en las bases de datos de ScienceDirect, Wos, Scielo y Dialnet, con la finalidad de identificar y desarrollar los principales problemas socioambientales que aquejan a las lomas costeras de Lima. METODOLOGÍA Se realizó una búsqueda bibliográfica de publicaciones científicas en revistas indexadas a través de diferentes plataformas, tales ScienceDirect, Wos, Scielo y Dialnet; para ello, se hicieron combinaciones de palabras, como “Lomas” and “Problemática”, “Loma” and “Biodiversidad”, y solo se revisaron artículos en el rango de años que va del 2008 a 2021, dada la escasez en la información; REVISTA DE CIENCIAS SOCIALES Vol. 2, N.º 2, enero - abril 2021 asimismo, se revisaron documentos publicados por entidades del estado, como Servicio Nacional Forestal y de Fauna Silvestre (Serfor), Ministerio del Ambiente (Minam) y Servicio Nacional de Áreas Naturales Protegidas por el Estado (Sernanp). Finalmente, para el desarrollo del marco legal, se recurrió al Diario Oficial El Peruano, canal por el cual se promulgan este tipo de documentos. Principales problemáticas en las lomas costeras de Lima Expansión urbana En el Perú, gran parte de la población se centra en las zonas costeras. En la capital, Lima, el porcentaje de la población que vive en asentamientos humanos ilegales fue aumentando con el tiempo. En 1956 era del 8 % y para 1989 ya era del 38 % (Newman, 2019). El proceso continuo de expansión urbana ha ocasionado la alteración de los límites y dimensiones de muchas lomas, afectando la cobertura vegetal, disminuyendo la cantidad y calidad del agua y del suelo (Soria y Romo, 2019). Un ejemplo notable de este proceso es lo que sucede con las lomas de Amancaes, amenazadas por la expansión urbana que viene desarrollándose de manera desordenada, debido a las poblaciones urbana de Independencia, Rímac y San Juan de Lurigancho, que poco a poco han construido viviendas y carreteras que han fragmentado el paisaje, afectado la extensión, cobertura vegetal y diversidad florística de muchas especies que están bajo algún grado de amenaza (Soria y Romo, 2019; Gálvez, Sobrepastoreo La cría de vacunos, caprinos y equinos es una de las actividades más recurrentes de las comunidades que circundan las lomas. Esto comenzó con la conquista española, ya que consigo trajeron nuevas especies de ganado que consumen pastos a un ritmo muy acelerado, al mismo tiempo que la erosión del suelo, debido a las pezuñas de estos. Es así como nació un riesgo en el equilibrio natural de estos frágiles oasis (Nieuwland y Mamani, 2017). Este tipo de actividad se puede visualizar a gran magnitud en la Reserva Nacional de Lachay, entre los meses de agosto y noviembre, provocando la compactación y degradación del suelo, e incidiendo gravemente en la deforestación y el incremento de la erosión en las laderas (Cuba y Odar, 2018). ARTÍCULOS DE INVESTIGACIÓN La influencia del hombre sobre las lomas ha sido significativa a lo largo del tiempo, ya sea de forma positiva, debido a la dispersión de semillas, o negativas, como lo que se va detallar a lo largo de este artículo. 2019). Una de las especies que se ha visto afectada es la Ismene amancaes, flor que dio el nombre al cerro. Según los últimos inventarios florísticos, esta especie no ha vuelto a ser encontrada en la loma de Amancaes (Minagri, 2013). En la Guía de Flora de las Lomas de Lima (Lleellish et al., 2015) se describen las posibles amenazas de la flora de las lomas, y muchas de las especies descritas confirman que la amenaza potencial es el sobrepastoreo. Es el caso de la Alstroemeria lineatiflora, Puya ferruginea, Tetragonia crystallina, Rostraria trachyantha, Erigeron leptorhizon, Philoglossa peruviana, Villanova oppositifolia y muchas especies más. Lamentablemente, este tipo de actividad trae como consecuencia la reducción de las lomas. Extracción de recursos La extracción de especies arbóreas agrava aún más el proceso de deforestación, ya que coloca en peligro de extinción a especies endémicas como como el arrayán (Myrcianthes ferreyrae), y otras especies como la 21 tara (Caesalpinia spinosa), principal captador de niebla en las lomas (Cordero et al., 2017; Gonzales y Villasante, 2019). ARTÍCULOS DE INVESTIGACIÓN Una serie de documentos indican signos de depredación de los recursos de las lomas. Entre ellas destacan las lomas de Atocongo, que hoy se han reducido considerablemente en su extensión (Nieuwland y Mamani, 2017). La misma situación ocurre en las lomas de Atiquipa, que en la actualidad han quedado reducidas a parches de “arrayan” (Cordero et al., 2017). De no regular este tipo de actividades, es evidente que las lomas estarán condenadas a su progresiva desertificación, dado que la vegetación arbórea intercepta la niebla proveniente del océano, aumentando la disponibilidad hídrica del ecosistema. Contaminación ambiental y mal manejo turístico Un mal manejo del turismo local puede ocasionar contaminación y daño a la propiedad cultural. El arrojo de residuos sólidos es una constante permanente en estas zonas. Suele ocurrir con mayor frecuencia en los meses de julio a octubre, ya que en esos meses hay una mayor afluencia de visitantes (Romero, 2016). Para citar unos ejemplos, el mencionado autor realizó un estudio en la Reserva Nacional de Lachay, con la finalidad de evaluar el impacto turístico en el ecosistema, concluyendo que el flujo de turistas a través de los años impactó de manera negativa, generando 5010 kg de residuos sólidos, estando el 92 % de esta cantidad relacionada con esta actividad turística. Asimismo, existieron denuncias de actos de vandalismo en las lomas de Lúcumo, ya que personas inescrupulosas dañaron el arte rupestre con pinturas acrílicas y ralladuras con algún material, además, se encontró restos de basura (botellas de gaseosa, bolsas, papeles, etc.). El primer acto es un ejemplo del daño cultural que la falta de educación provoca. 22 Otro ejemplo de contaminación, no necesariamente proveniente del turismo, sucede en las lomas de Primavera (Carabayllo), que ya de por sí es una de las zonas más críticas de Lima norte. Por irresponsabilidad de la empresa Ingemedios, diariamente ingresan aproximadamente 45 toneladas de desechos, deteriorando el ecosistema y poniendo en riesgo la salud pública (Montenegro y Deza, 2019). En estas mismas lomas, Bernal (2019) afirmó que la informalidad es el modo predominante de las empresas mineras y son las que contaminan más, ya que durante los procesos emiten material particulado que es perjudicial tanto para las lomas como para la comunidad alrededor. Participación de la sociedad civil en la conservación de las lomas Debido a las constantes amenazas que sufren las lomas costeras, y el impacto que estas producen sobre su extensión, su diversidad biológica y las especies endémicas que se encuentran bajo algún grado de amenaza (Municipalidad de Lima et al., 2019), es necesario establecer planes de manejo, programas de conservación y políticas que permitan conservar y proteger estos ecosistemas únicos del desierto costero peruano. Tal como señalan Trinidad et al. (2012), La sociedad civil ha jugado un rol muy importante dentro de la conservación de las lomas, ya que impulsan a que las personas se involucren con la naturaleza a través del ecoturismo y campañas como “Salvemos las lomas”, que tienen la finalidad de sensibilizar sobre el cuidado de estas (Centro Urbes, 2019). En Lima Metropolitana existen alrededor de ocho emprendimientos sociales de la sociedad civil, preocupados y comprometidos con la conservación de las lomas (Tabla 1). Cada uno de estos emprendimientos trabaja arduamente en la protección de las REVISTA DE CIENCIAS SOCIALES Vol. 2, N.º 2, enero - abril 2021 lomas de su distrito, a través de acciones legales o denunciando a quienes perjudican el ecosistema, o planificando y realizando educación ambiental a través del turismo; de esa forma, buscan espacios para tener incidencia en tomadores de decisiones u organizando campañas de reforestación y de limpieza (Kato,2018). Sin embargo, el traba- jar de manera independiente, es decir, velando solo por las lomas de sus distritos, no han logrado tener incidencia fuerte, por lo que la mencionada autora sugiere la unión de esta sociedad civil para crear una marca que los ayude a recaudar fondos, y seguir con las actividades de educación ambiental y conservación. Tabla 1. Emprendimientos sociales que se dedican a velar por las lomas de Lima Loma Distrito Asociación Circuito Ecoturístico Lomas de Lúcumo Lomas de Lúcumo Pachacámac Asociación Ecoturística Lomas del Paraíso Lomas del Paraíso Villa María del Triunfo Comité Ecoturístico de las Lomas de Mangomarca Lomas de Mangomarca San Juan de Lurigancho Asociación Ecológica Lomas de Primavera Carabayllo Lomas de Primavera Carabayllo Carabayllo Lomas de Amancaes Rímac Protectoras de la Flor y las Lomas de Amancaes (Pafla) Lomas de Amancaes, Haz tu Mundo Verde Instituto de Cultura, Historia y Medio Ambiente (ICHMA) Kusi Sonqo Lomas del Mirador San Juan de Lurigancho Lomas de Mangomarca San Juan de Lurigancho Lomas de Mangomarca San Juan de Lurigancho Así también, existen programas grandes, como el de las Naciones Unidas para el Desarrollo (PNUD), que actualmente vienen realizando el proyecto EbA Lomas, que busca generar información y articular espacios para la conservación de las lomas de Lima. Este proyecto empezó en agosto del 2016 y finalizará en agosto del 2021. Tiene como meta lograr alianzas interinstitucionales para la conservación de lomas con 21 000 hectáreas protegidas y la caracterización detallada de 14 de estas, además de promover la reducción del 50 % de su degradación (PNUD, 2016). La iniciativa de diferentes organizaciones defensoras de las lomas ha impulsado a ARTÍCULOS DE INVESTIGACIÓN Asociación Local las autoridades competentes a desarrollar nuevos lineamientos para proteger a las lomas costeras. Desde la legislación nacional, se considera a las lomas costeras como ecosistemas frágiles (Resolución Ministerial N.º 404-2013-Minagri, 2013). Asimismo, en el 2019, en Lima Metropolitana, se crea el Área de Conservación Regional-ACR (Tabla 2) (D. S. N.º 011-2019-MINAM, 2019) (Tabla 2), con la finalidad de conservar las lomas, su diversidad biológica y el patrimonio cultural asociado. 23 Tabla 2. Lomas que conforman el Área de Conservación Regional creada por la Municipalidad de Lima. Área de Conservación Regional (ACR) Nombre de las Lomas Distrito Lomas de Ancón Ancón Lomas de Carabayllo 1 Ancón, Puente Piedra, Carabayllo Lomas de Carabayllo 2 Carabayllo Lomas de Amancaes Rímac, Independencia, San Juan de Lurigancho Lomas de Villa María Santiago de Surco, La Molina, San Juan de Miraflores, Villa María del Triunfo ARTÍCULOS DE INVESTIGACIÓN Fuente. Tomado de Municipalidad de Lima (2019) El 13 de agosto del 2020, en medio de la crisis sanitaria, se aprobó el Protocolo de Actuación Interinstitucional para gestionar y proteger los ecosistemas incluidos en la Lista Sectorial de Ecosistemas Frágiles. Una herramienta muy útil para los defensores ambientales (D. S. N.º 007-2020-Minagri, 2020). Por otro lado, las municipales distritales, como la de Carabayllo, declararon de interés público, patrimonial, cultural y de protección paisajística, al ecosistema frágil denominado Lomas de Primavera (Ordenanza N.º 397-2018-MDC, 2018). CONCLUSIONES Las lomas costeras son un importante ecosistema de la ciudad de Lima, dado que tienen relación cultural y socioambiental importante con los limeños, tanto en el pasado como ahora. Sin embargo, vienen siendo afectadas por diferentes problemáticas (expansión urbana, sobrepastoreo, contaminación ambiental, etc.). Todo esto daña de sobremanera la cobertura vegetal y la diversidad, tanto de flora como de fauna; además, afecta a las comunidades que las rodean. Las lomas costeras cuentan con servicios ecosistémicos (provisión, regulación y cultural) que benefician a las comunidades locales. La sociedad civil ha jugado un rol muy importante dentro de la conservación de estos ecosistemas frágiles, ya que son ellos los que gestionan, plantean e incentivan la creación de lineamientos para su protección. De esa forma, limitan las invasiones y otras problemáticas que amenazan y ponen en riesgo la diversidad biológica, así como los servicios que brindan al entorno. Son necesarios más proyectos de investigación relacionados con las lomas y su degradación, debido al aumento de la urbanización. Si bien es un problema constante y evidente, no siempre tiene la atención necesaria. Además, debe priorizarse la exposición y denuncia de estas mafias de tráficos de terrenos, mediante los medios de comunicación. 24 REVISTA DE CIENCIAS SOCIALES Vol. 2, N.º 2, enero - abril 2021 REFERENCIAS Bernal, C. (2019). Contaminación por material particulado (PM10 y PM2.5) y enfermedades respiratorias agudas a menores de 5 años en Lomas de Carabayllo, Lima-Perú. Journal of Chemical Information and Modeling, 53(9), 1689-1699. http://ctscafe.pe/index.php/ctscafe/article/view/96 Ministerio del Ambiente. (2019). D. S. N.º 310-77-AG. Que declara la creación de la Reserva Nacional de Lachay, cuyo objetivo de creación es proteger una muestra representativa del ecosistema de lomas de la costa central del Perú y contribuir a elevar el nivel de vida de la población local (1977). Sernanp. https://www.gob.pe/institucion/sernanp/ informes-publicaciones/1718927-reserva-nacional-de-lachay Centro Urbes. (2019). Salvemos las Lomas Centro Urbes. https://centrourbes. wordpress.com/2019/09/24/centro-urbes-gana-premio-nacional-de-la-juventud-con-salvemoslaslomas/ Gálvez, D. (2019). Impacto de la expansión urbana sobre las lomas costeras del Perú [tesis de bachillerato, Universidad Científica del Sur]. Repositorio Institucional Científica. https://repositorio.cientifica.edu.pe/handle/20.500.12805/1198 Cordero, I., Ruiz-Díez, B., Balaguer, L., Richter, A., Pueyo, J. & Rincón, A. (2017). Rhizospheric microbial community of Caesalpinia spinosa (Mol.) Kuntze in conserved and deforested zones of the Atiquipa fog forest in Peru. Applied Soil Ecology, 114, 132-141. https:// doi.org/10.1016/j.apsoil.2017.02.015 Gamboa, P. (2019). Sistema de Lomas Costeras. Ministerio del Ambiente. https://patrimoniomundial.cultura.pe/sites/default/files/li/ pdf/17.%20Sistema%20de%20Lomas%20 -%20Esp.pdf Coronel, M. (2017). Impactos del turismo en las Lomas de Amancaes, desde la perspectiva de los pobladores aledaños, Distrito de Rímac - Lima, 2017 [tesis de licenciatura, Universidad César Vallejo]. Repositorio Institucional UCV. https://repositorio.ucv. edu.pe/handle/20.500.12692/18634 Cuba-Melly, N. y Odar, J. (2018). Diversidad de flora vascular de las lomas de Granados y posibles amenazas a su conservación, provincia de Huaral, Lima-Perú. The Biologist, 16(2). DOI: http://dx.doi.org/10.24039/ rtb2018162245 ARTÍCULOS DE INVESTIGACIÓN Castañeda, L. (2018). Propuesta de monitoreo de variables comunitarias al evento El Niño (1998-2001, 2010) en las Lomas de Lachay, Perú [tesis de maestría, Universidad Nacional Agraria La Molina]. Repositorio Institucional Lamolina. http://repositorio. lamolina.edu.pe/handle/UNALM/3811 Ministerio de Agricultura. (2020). D. S. N.º 007-2020-MINAGRI. Aprueba el Protocolo de Actuación Interinstitucional para Gestionar y Proteger los ecosistemas incluidos en la Lista Sectorial de Ecosistemas Frágiles. Diario Oficial El Peruano. https://bit.ly/3u8z3gx Gonzales, F. y Villasante, F. (2019). Estado de conservación de Myrcianthes ferreyrae un árbol endémico de las lomas costeras del sur del Perú. Revista Peruana de Biología, 26(2), 235–242. DOI: https://doi.org/10.15381/ rpb.v26i2.16380 Kalicki, T. & Kalicki, P. (2020). Fluvial activity in the Lomas de Lachay during the upper Pleistocene and Holocene. Geomorphology, 357, 107087. DOI: https://doi. org/10.1016/j.geomorph.2020.107087 25 Kato, A. (2018). Detrás de la neblina: lomas de Lima. Agenda Viva, 2, 9-15. https://revistas.ulima.edu.pe/index.php/AgendaViva/ article/view/2808/2702 Lleellish, M., Jael, O. y Trinidad, H. (2015). Guía de flora de las Lomas de Lima-2015. Serfor. https://www.researchgate.net/publication/274374014_Guia_de_Flora_de_las_Lomas_de_Lima ARTÍCULOS DE INVESTIGACIÓN Madrid-Ibarra, F. y Cabanillas-Rodríguez, E. (2020). Diversidad florística de lomas de Lúcumo, Lima, Perú. Biotempo, 17(2), 287299. https://revistas.urp.edu.pe/index.php/ Biotempo/article/view/3368 Ministerio de Agricultura. (2013). Resolución Ministerial N.º 0404. Minagri. https:// www.serfor.gob.pe/portal/wp-content/ uploads/2017/06/9-RM-N%C2%B0-04042013-MINAGRI-EFLoma-Amancaes.pdf Ministerio del Ambiente. (2017). Programa Presupuestal N.º 0144. Conservación y uso sostenible de ecosistemas para la provisión de servicios ecosistémicos. Minam. https:// w w w. m i n a m . g o b . p e / w p - c o n t e n t /u p loads/2017/05/Anexo-02-PP-144-2018. compressed.pdf Montenegro, M. y Deza, J. (2019). Camposanto Lomas de Carabayllo [tesis de licenciatura, Universidad Ricardo Palma]. Repositorio Institucional URP. https://repositorio.urp.edu.pe/handle/URP/2592 Municipalidad de Lima, Programa de Gobierno Regional de Lima Metropolitana, Programa de las Naciones Unidas para el Desarrollo y Sernanp. (2019). Expediente técnico: Propuesta de Área de Conservación Regional “Sistema de Lomas de Lima”. Municipalidad de Lima. http://pgrlm.gob.pe/ wp-content/uploads/sites/30/2019/10/ Sistema_de_Lomas.pdf 26 Newman, S. (2019). The State’s Unintentional Production of Turf-controlling Neighborhood Elites in Twentieth Century Lima, Peru. The politics of land. https://bit. ly/2SdbBk1 Nieuwland, B. y Mamani, J. (2017). Las lomas de Lima: enfocando ecosistemas desérticos como espacios abiertos en Lima metropolitana. Espacio y Desarrollo, 133(29), 109-133. DOI: https://doi.org/10.18800/ espacioydesarrollo.201701.005 PNUD (2016). Proyecto EbA Lomas. Descripción del proyecto. PNUD. https://www.pe.undp.org/content/peru/es/home/operations/ projects/environment_and_energy/eba-lomas.html PNUD. (2018). Retos y oportunidades en la conservación de las lomas de Lima Metropolitana. EbaLOmas. Ministerio del Ambiente. (2010). R. M. N.º 189-2010-MINAM. Declaran la zona reservada “Lomas de Ancón” ubicado en la Provincia y Departamento de Lima (2010). Minam. https://sinia.minam.gob.pe/normas/declaran-zona-reservada-lomas-ancon-lima Romero, J. (2016). Actividad Turística y su Impacto en el Ecosistema de Lomas en la Reserva Nacional de Lachay-2013. Big Bang Faustiniano, 5(4), 30-36. https://doi. org/10.51431/bbf.v5i4.34 Romero Valle, A., Medina Salcedo, M. y Ocaña Canales, J. (2018). Caracterización biológica durante el fenómeno de El Niño en el ecosistema de las Lomas de Lachay. Anales Científicos, 79(2), 316. https://doi. org/10.21704/ac.v79i2.1003 REVISTA DE CIENCIAS SOCIALES Vol. 2, N.º 2, enero - abril 2021 Rundel, P., Dillon, M., Palma, B., Mooney, A., Gulmon, S. & Ehleringer, J. (1991). The phytogeography and ecology of the coastal Atacama and Peruvian Desserts. Aliso, 13(1), 1-49. https://doi.org/10.5642/aliso.19911301.02 Sotomayor, D. y Jiménez, P. (2008). condiciones meteorológicas y dinámica vegetal del ecosistema costero Lomas de Atiquipa (Caravelí-Arequipa) en el sur del Perú. Ecología Aplicada, 7(1-2), 1. DOI: https://doi. org/10.21704/rea.v7i1-2.353 Soria, C. y Romo, P. (2019). Rompiendo lo frágil. La experiencia del crecimiento urbano en las lomas de Amancaes. Themis Revista de Derecho, 74. http://revistas.pucp.edu.pe/ index.php/themis/article/view/21241 Trinidad, H., Huamán-Melo, E., Delgado, A. y Cano, A. (2012). Flora vascular de las lomas de Villa María y Amancaes, Lima, Perú. Revista Peruana de Biología, 19(2), 149-158. https://doi.org/10.15381/rpb.v19i2.834 ARTÍCULOS DE INVESTIGACIÓN ANEXOS Figura 1. Las lomas más reconocidas de Lima UBICACIÓN Lima Ancón Carabayllo Puquio Km. 22 Collique Payet Amancaes Mangomarca Pamplona (Las Viñas) Isla San Lorenzo Retamal Villa María Lúcumo (Quebrada verde) Manchay Pachacámac (Jatosissa) Lurin (Portillo grande) Lúcuma Malanche Pacta Isla Pachacamac Caringa Jime Cicazos Nota. Tomado de Proyecto EbA Lomas (PNUD, 2016) 27 Tabla 1. Lomas vulnerables y su problemática Loma Lomas de Amancaes Lomas de Primavera (Carabayllo) Lomas de Lúcumo Problemática principal - Degradación de la cobertura por la extensión urbana y tráfico de terrenos. - Contaminación por parte de empresas privadas. - Falta de control en el turismo local. - Falta de control en el turismo local. - Degradación de la cobertura por la extensión urbana y tráfico Lomas de Mangomarca de terrenos. - Falta de control en el turismo local. ARTÍCULOS DE INVESTIGACIÓN Lomas de Villa María 28 - Degradación de la cobertura por la extensión urbana y tráficos de terrenos.
https://openalex.org/W2260501105
https://www.nature.com/articles/ncomms9144.pdf
English
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Realizing high figure of merit in heavy-band p-type half-Heusler thermoelectric materials
Nature communications
2,015
cc-by
6,828
Received 4 Mar 2015 | Accepted 23 Jul 2015 | Published 2 Sep 2015 Realizing high figure of merit in heavy-band p-type half-Heusler thermoelectric materials DOI: 10.1038/ncomms9144 OPEN Received 4 Mar 2015 | Accepted 23 Jul 2015 | Published 2 Sep 2015 Received 4 Mar 2015 | Accepted 23 Jul 2015 | Published 2 Sep 2015 1 State Key Laboratory of Silicon Materials and School of Materials Science and Engineering, Zhejiang University, Hangzhou 310027, China. 2 State Key Laboratory of High Performance Ceramics and Superfine Microstructure, Shanghai Institute of Ceramics, Chinese Academy of Sciences, Shanghai 200050, China. 3 Key Laboratory of Advanced Materials and Applications for Batteries of Zhejiang Province, Zhejiang University, Hangzhou 310027, China. Correspondence and requests for materials should be addressed to L.D.C. (email: cld@mail.sic.ac.cn) or to T.J.Z. (email: zhutj@zju.edu.cn.). Realizing high figure of merit in heavy-band p-type half-Heusler thermoelectric materials Solid-state thermoelectric technology offers a promising solution for converting waste heat to useful electrical power. Both high operating temperature and high figure of merit zT are desirable for high-efficiency thermoelectric power generation. Here we report a high zT of B1.5 at 1,200 K for the p-type FeNbSb heavy-band half-Heusler alloys. High content of heavier Hf dopant simultaneously optimizes the electrical power factor and suppresses thermal conductivity. Both the enhanced point-defect and electron–phonon scatterings contribute to a significant reduction in the lattice thermal conductivity. An eight couple prototype thermoelectric module exhibits a high conversion efficiency of 6.2% and a high power density of 2.2 Wcm  2 at a temperature difference of 655 K. These findings highlight the optimization strategy for heavy-band thermoelectric materials and demonstrate a realistic prospect of high-temperature thermoelectric modules based on half-Heusler alloys with low cost, excellent mechanical robustness and stability. 1 State Key Laboratory of Silicon Materials and School of Materials Science and Engineering, Zhejiang University, Hangzhou 310027, China. 2 State Key Laboratory of High Performance Ceramics and Superfine Microstructure, Shanghai Institute of Ceramics, Chinese Academy of Sciences, Shanghai 200050, China. 3 Key Laboratory of Advanced Materials and Applications for Batteries of Zhejiang Province, Zhejiang University, Hangzhou 310027, China. Correspondence and requests for materials should be addressed to L.D.C. (email: cld@mail.sic.ac.cn) or to T.J.Z. (email: zhutj@zju.edu.cn.). 1 1 NATURE COMMUNICATIONS | 6:8144 | DOI: 10.1038/ncomms9144 | www.nature.com/naturecommunications & 2015 Macmillan Publishers Limited. All rights reserved. ARTICLE NATURE COMMUNICATIONS | DOI: 10.1038/ncomms9144 T he demand for sustainable energies has sparked significant research into different types of energy conversion technol- ogies in the past decades. Thermoelectric materials, which can directly convert waste heat into usable electricity, have received more and more attention for promising application in energy harvesting1,2. The conversion efficiency Z of a thermoelectric device is limited by the Carnot efficiency Zc, and the figure of merit zT of the thermoelectric materials, which is expressed as zT ¼ a2sT/(ke þ kL), where a, s, T, ke and kL are the Seebeck coefficient. respectively, the electrical conductivity, the absolute temperature and the electronic and lattice components of total thermal conductivity k (ref. 1). Thus, a high Zc and a high zT will result in enhanced conversion efficiency. The thermoelectric parameters a, s, and ke are intimately interrelated via carrier concentration and it has been a big challenge to decouple the thermal and electrical properties. Realizing high figure of merit in heavy-band p-type half-Heusler thermoelectric materials A common character of these materials is that their band structures near the Fermi levels are dominated by the s or p electronic states, accounting for the low density of states effective mass m* and high m. These light-band thermoelectric semiconductors with small m* (0.1 me–1.0 me) generally request relatively low-optimal carrier concentration popt (1019–1020 cm  3), as shown in Fig. 1a, a low content of dopants is enough to optimize their power factors. p g p p In recent years, some other semiconductors have also been identified as promising high-performance thermoelectric materials, such as tin selenides2, filled skutterudites9 and half-Heusler compounds10,11. Most of them contain transition metal elements, such as Fe, Co, Ni et al., and their localized 3d states make the valence band maximum or conduction band minimum flat and heavy12,13. Typically, the m* of these heavy- band materials are in the range of 2 me–10 me (Fig. 1a). Thus, higher carrier concentrations, which demands for higher contents of dopants, are necessary to optimize the power factors. For example, the popt of heavy-band ZrNiSn alloys is B4  1020 cm  3, one order of magnitude higher than that of PbTe (B3  1019 cm  3), while the popt of filled CoSb3 and FeNbSb system with larger m* are above 1021 cm  3 (Fig. 1b). Note that even though these heavy-band thermoelectric materials have large m* and hence low m, their optimal power factors are 2–3 times higher than the state-of-the-art light-band PbTe, which is an important reason making these heavy-band thermoelectrics promising for power generation. An immediate question arises that what is the effective optimization strategy for achieving high zT heavy-band thermoelectric materials? Here we indeed demonstrate that the thermoelectric properties of p-type FeNbSb half-Heusler compound can be significantly enhanced through heavier Hf doping. A record-high zT of up to 1.5 at 1,200 K has been obtained in the heavy-band FeNb1  xHfxSb alloys. High contents of Hf and Zr dopants result in enhanced point-defect scattering of phonons, and the Hf doping at Nb site leads to the stronger phonon scattering. Interestingly, the electron–phonon scattering is found to also strongly contribute to the reduced kL at high dopant contents. An eight n–p couples prototype half-Heusler thermoelectric module, based on our high-performance n-type ZrNiSn (ref. 18) and p-type FeNbSb compounds, is successfully assembled for the first time in this work. Realizing high figure of merit in heavy-band p-type half-Heusler thermoelectric materials Two main strategies, therefore, have been individually adopted to improve zT. One is to maximize the power factor a2s through optimal doping and band engineering1,3,4. The other targets to reduce the lattice thermal conductivity kL by nanostructuring or phonon engineering5,6. T ZrCoSb compounds17. Such a high content of dopant will also definitely create strong point-defect phonon scattering to reduce kL. Furthermore, stronger point-defect phonon scattering may occur if the doping atoms have larger mass and strain field fluctuations compared with the host atoms (Fig. 1c), which could be an effective strategy for simultaneously optimizing electrical power factor and reducing thermal conductivity in heavy-band thermoelectric materials. A high Carnot limit, Zc ¼ (TH  TC)/TH, needs a large temperature difference between the temperature of hot side, TH, and temperature of cold side, TC, of the thermoelectric device. Therefore, high temperature thermoelectric materials with superior properties are highly desirable for power generation operating above 1,000 K. Half-Heusler compounds have attracted more and more attention due to their good electrical and mechanical properties and thermal stability at high tempera- tures11,17–26. The highest zTs of B1.0 have been reported for n-type ZrNiSn-based half-Heusler alloys18,20,21,24. But developing high-performance p-type Zr-based half-Heusler compounds is still a big challenge17,24. Recently, we found that p-type Fe(V,Nb)Sb-based heavy-band half-Heusler compounds show great potential as high-temperature thermoelectric materials and a high zT of 1.1 has been reached at 1,100 K in FeNb1  xTixSb with high Ti content up to 20%19,27. Although the kL of Ti-doped FeNbSb is remarkably reduced due to the enhanced point-defect scattering, it is still B3 times as high as the calculated minimum kL (B1 W m  1 K  1)19. To achieve higher zT in p-type FeNbSb, it is imperative to further suppress its kL. Based on the above consideration and Fig. 1c, selecting the high contents of doping atoms having larger mass and radius differences with the host atoms may lead to further kL reduction at optimal carrier concentration and hence enhanced zT. Traditional good thermoelectric materials, such as BixSb2-xTe3 alloys near room temperature, PbTe1  xSex alloys at moderate temperature and Si1  xGex alloys at high temperature, have high carrier mobility m and reduced kL (refs 7,8). Realizing high figure of merit in heavy-band p-type half-Heusler thermoelectric materials A maximum conversion efficiency of 6.2% and a power density of 2.2 W cm  2 under a temperature difference of 655 K are achieved, exhibiting the great potential of low-cost p-type FeNbSb half-Heusler compounds for high temperature power generation. NATURE COMMUNICATIONS | 6:8144 | DOI: 10.1038/ncomms9144 | www.nature.com/naturecommunications & 2015 Macmillan Publishers Limited. All rights reserved. NATURE COMMUNICATIONS | DOI: 10.1038/ncomms9144 (b) Carrier concentration dependence of power factor for the typical light-band PbTe15, and the heavy-band system: n-type ZrNiSn33, n-type filled CoSb346 and p-type FeNbSb near 800 K. (c) The schematic drawing shows the effect of band structure character on optimal doping content and hence phonon scattering. 1.5 1.2 0.9 0.6 0.3 0.0 300 600 600 700 800 900 900 1,000 1,200 T (K) TC=336 K 10 8 6 4 2 0 15 10 5 0 Conversion efficiency (%) Hot side temperature TH (K) Maximum power output (W) FeNb1-xHfxSb FeNb0.8Ti0.2Sb FeNb1-yZrySb x=0.08 x=0.10 x=0.12 x=0.14 y=0.14 y=0.10 y=0.08 n-ZrNiSn p-SiGe p-ZrCoSb p-Yb11MnSb14 zT a b Figure 2 | Thermoelectric performance for p-type FeNbSb-based HH compounds and prototype module. (a) zT comparison for Hf or Zr doped FeNbSb and other typical high temperature p-type thermoelectric materials17–19,40,47. (b) Maximum power output and conversion efficiency as a function of hot side temperature TH for the thermoelectric device made from our best n-type ZrNiSn-based alloys and p-type FeNbSb HH compounds. The dash line represents the theoretical conversion efficiency of the module with a maximum value of 11.3%, assuming no electrical and thermal contact resistances. 1.5 1.2 0.9 0.6 0.3 0.0 300 600 900 1,200 T (K) FeNb1-xHfxSb FeNb0.8Ti0.2Sb FeNb1-yZrySb x=0.08 x=0.10 x=0.12 x=0.14 y=0.14 y=0.10 y=0.08 n-ZrNiSn p-SiGe p-ZrCoSb p-Yb11MnSb14 zT a 600 700 800 900 1,000 TC=336 K 10 8 6 4 2 0 15 10 5 0 Conversion efficiency (%) Hot side temperature TH (K) Maximum power output (W) b a Hot side temperature TH (K) Figure 2 | Thermoelectric performance for p-type FeNbSb-based HH compounds and prototype module. (a) zT comparison for Hf or Zr doped FeNbSb and other typical high temperature p-type thermoelectric materials17–19,40,47. (b) Maximum power output and conversion efficiency as a function of hot side temperature TH for the thermoelectric device made from our best n-type ZrNiSn-based alloys and p-type FeNbSb HH compounds. The dash line represents the theoretical conversion efficiency of the module with a maximum value of 11.3%, assuming no electrical and thermal contact resistances. respectively, even exceeding the industry benchmark set by conventional p-type SiGe alloys (peak zT ¼ 0.6)17. 6.2% conversion efficiency, which is significantly higher than the conversion efficiency of 4.5% for the commercial half-Heusler modules based on n-type ZrNiSn and p-type ZrCoSb-based half-Heusler alloys. Extrapolated values indicate that 8.1% is achievable when the hot-side temperature is up to 1,200 K. NATURE COMMUNICATIONS | DOI: 10.1038/ncomms9144 NATURE COMMUNICATIONS | DOI: 10.1038/ncomms9144 10 10 1 1 0.1 0.1 7 6 5 4 3 2 1 0 0.01 0.1 1 10 100 m* /me pH (1020 cm–3) popt (1020 cm–3) n-Type p-Type FeV0.6Nb0.4Sb FeNbSb FeNbSb, m*∼6.9me CoSb3, m*∼4.0me ZrNiSn, m*∼2.8me PbTe, m*∼0.5me ∼800 K FeV0.6Nb0.4Sb Yb9Mn4.2Sb9 Ba8Ga16Ge30 Mg2(Si,Sn) SiGe PbS PbSe PbTe ZrNiSn Mo3Sb7 Cu2Se Cu2S CoSb3 TAGS 2 (10–3 W m–1 K–2) Light band Low doping content Weak scattering Strong scattering Stronger scattering Phonons Phonons Phonons High doping content High doping content Heavy band Heavy band CB EF VB + + + + + + + a b c Figure 1 | Comparison of transport character of light-band and heavy-band thermoelectric materials. (a) The optimal carrier concentration popt versus the density of state effective mass m* for thermoelectric materials15,16,27,31–33,36,39–45. The solid line is a guide for eyes. (b) Carrier concentration dependence of power factor for the typical light-band PbTe15, and the heavy-band system: n-type ZrNiSn33, n-type filled CoSb346 and p-type FeNbSb near 800 K. (c) The schematic drawing shows the effect of band structure character on optimal doping content and hence phonon scattering. 10 10 1 1 0.1 0.1 m* /me popt (1020 cm–3) n-Type p-Type FeV0.6Nb0.4Sb FeNbSb FeV0.6Nb0.4Sb Yb9Mn4.2Sb9 Ba8Ga16Ge30 Mg2(Si,Sn) SiGe PbS PbSe PbTe ZrNiSn Mo3Sb7 Cu2Se Cu2S CoSb3 TAGS a 10 10 1 1 0.1 0.1 7 6 5 4 3 2 1 0 0.01 0.1 1 10 100 m* /me pH (1020 cm–3) popt (1020 cm–3) n-Type p-Type FeV0.6Nb0.4Sb FeNbSb FeNbSb, m*∼6.9me CoSb3, m*∼4.0me ZrNiSn, m*∼2.8me PbTe, m*∼0.5me ∼800 K FeV0.6Nb0.4Sb Yb9Mn4.2Sb9 Ba8Ga16Ge30 Mg2(Si,Sn) SiGe PbS PbSe PbTe ZrNiSn Mo3Sb7 Cu2Se Cu2S CoSb3 TAGS 2 (10–3 W m–1 K–2) a b 7 6 5 4 3 2 1 0 0.01 0.1 1 10 100 pH (1020 cm–3) FeNbSb, m*∼6.9me CoSb3, m*∼4.0me ZrNiSn, m*∼2.8me PbTe, m*∼0.5me ∼800 K 2 (10–3 W m–1 K–2) b b Light band Low doping content Weak scattering Strong scattering Stronger scattering Phonons Phonons Phonons High doping content High doping content Heavy band Heavy band CB EF VB + + + + + + + c c Figure 1 | Comparison of transport character of light-band and heavy-band thermoelectric materials. (a) The optimal carrier concentration popt versus the density of state effective mass m* for thermoelectric materials15,16,27,31–33,36,39–45. The solid line is a guide for eyes. & 2015 Macmillan Publishers Limited. All rights reserved. Results zT enhancement and prototype half-Heusler module. High- quality FeNb1  xHfxSb and FeNb1  yZrySb (x, y ¼ 0–0.16) samples were fabricated by levitation melting and spark plasma sintering. X-ray diffraction (XRD) patterns show that the single phase products were obtained (Supplementary Fig. 1). Figure 2a shows the zT values of these samples. A peak zT of B1.5 is reached at 1,200 K for FeNb0.88Hf0.12Sb and FeNb0.86Hf0.14Sb, B40% higher than that of Ti-doped FeNbSb19, and the zTs are remarkably higher than other well-known state-of-the-art p-type high-temperature thermoelectric materials over the whole temperature range. As known, the average zTavg is more important than the peak zT for thermoelectric device application. The zTavg of FeNb0.88Hf0.12Sb sample is calculated to be B0.8 and B1.0 in the temperature range of 300–1,200 and 500–1,200 K, Alloying (substitution or doping) creates point-defect scattering for phonons due to mass fluctuation and strain field fluctuation between the host atoms and alloying atoms14, and results in reduced kL. In thermoelectric materials, dopants not only supply carriers to optimize the power factor, but deduce point-defect scattering of phonons to suppress kL. For light-band thermoelectric semiconductors, the popt is relatively low and a slight content of dopants are enough to optimize the power factor15,16, and the dopants usually contribute less to the kL reduction. By contrast, in heavy-band semiconductors, higher contents of dopants are demanded for optimizing the carrier concentration to reach the same Femi level (Fig. 1c). For example, B20% Sn was doped to optimize the power factor of heavy-band B20% Sn was doped to optimize the power factor of heavy-band NATURE COMMUNICATIONS | 6:8144 | DOI: 10.1038/ncomms9144 | www.nature.com/naturecommunications & 2015 Macmillan Publishers Limited. All rights reserved. 2 ARTICLE NATURE COMMUNICATIONS | 6:8144 | DOI: 10.1038/ncomms9144 | www.nature.com/naturecommunications & 2015 Macmillan Publishers Limited. All rights reserved. ARTICLE The carrier concentration dependence of power factor for Hf- and Zr-doped FeNbSb samples at 800 K is shown in Fig. 3d, together with Ti doping data19. The optimal power factor ranges from 4.3 to 5.5  10  3 W m  1 K  2 at popt of B2  1021 cm  3, which are relatively high values among established thermoelectric materials and comparable to the optimized n-type ZrNiSn-based half-Heusler compounds33. Figure 3d also indicates that the power factors of Hf-doped FeNbSb are higher than that of Zr- or Ti-doped samples. Further analysis shows that the Hf dopant is Reduced lattice thermal conductivity and mechanisms. The temperature dependences of k and kL of FeNb1  xHfxSb and FeNb1  yZrySb compounds are presented in Fig. 4. The kL was obtained by subtracting the electronic component ke from the total thermal conductivity k. ke was calculated via Wiedemann– Franz relationship ke ¼ LsT, where L is the Lorenz number determined under the SPB approximation32. Figure 4a shows the k of Hf- and Zr-doped FeNbSb compounds are lower than that of FeNbSb. The decrease in k mainly results from the greatly suppressed kL. As shown in Fig. 4b, with the same doping content, the kL of Hf-doped FeNbSb is lower than that of Zr- and Ti-doped samples, and the high-temperature kL of FeNb0.8Ti0.2Sb is only close to that of FeNb0.9Hf0.1Sb, suggesting that Hf dopant leads to significantly reduced kL in FeNbSb even at a low content. The kL of FeNb1  xHfxSb decreases greatly with increasing Hf content. Especially, at 300 and 1,000 K the kL of FeNb0.86Hf0.14Sb has B80% and B70% reduction respectively, compared with 80 60 40 20 300 300 200 100 400 500 600 900 1,200 300 300 250 150 50 200 100 600 900 1,200 0 0 0 10 20 30 40 6 4 2 0 1 10 100 16 12 8 4 T (K) T (K) pH (1020 cm–3) pH (1020 cm–3)  (μV K–1)  (μV K–1) 2 (10–3 W m–1 K–2)  (104 Ω–1 m–1)  (W m–1 K–1) T –1.5 FeNb1-xHfxSb FeNb1-xHfxSb FeNb1-yZrySb FeNb1-yZrySb x=0.08 x=0.10 x=0.12 x=0.14 x=0.08 x=0.10 x=0.12 x=0.14 y =0.14 y =0.10 y =0.08 y=0.14 y=0.10 y=0.08 Exp. FeNbSb: Hf FeNbSb: Zr FeNbSb: Ti FeNbSb: Hf FeNbSb: Zr FeNbSb: Ti Cal. ARTICLE ARTICLE NATURE COMMUNICATIONS | DOI: 10.1038/ncomms9144 matching between n-type and p-type legs, the insufficient contacting and the large radiation and convection losses and insufficient accuracy of measurement. Especially, the contact resistance contributes to about 3.2% efficiency loss (Supplementary Discussion). More work is needed to improve the contacting electrical and thermal resistance and use thermal isolation between the half-Heusler legs. more efficient in supplying carriers than Zr and Ti (Supplementary Fig. 4). Thus at the carrier concentration of B2  1021 cm  3 for p-type FeNbSb, the doping content of Hf, Zr and Ti is about 12, 14 and 16%, respectively (Supplementary Fig. 4a). The corresponding room temperature carrier mobility for these samples are 18.4, 15.0 and 13.8 cm2 V  1 s  1, indicating that the less doping content for Hf-doped FeNbSb is beneficial for relatively higher carrier mobility due to the reduced alloy scattering of carriers. Therefore, at the same carrier concentration, the Hf-doped FeNbSb has higher power factors than Zr- and Ti-doped samples (Supplementary Fig. 4b). It is noteworthy that the different dopants also generate different effects on the thermal conductivity (Fig. 3d). The heavier Hf dopant leads to the B30% lower thermal conductivity compared with the Zr dopant, consistent with the discussion relevant to Fig. 1c. Decoupling of electrical and thermal properties. Why do the p-type heavy-band FeNb1  xHfxSb alloys have so high zTs? The thermoelectric properties of FeNb1  xHfxSb and FeNb1  yZrySb compounds are presented in Fig. 3, and analysed by using the single parabolic band (SPB) model31,32. The samples are heavily doped and the hole concentration is almost independent of temperature before intrinsic excitation (Supplementary Fig. 3). The electrical conductivity s of the FeNb1  xHfxSb and FeNb1  yZrySb samples shows a metal-like behaviour and follows a temperature dependence of T  1.5 (Fig. 3a), implying an acoustic phonon-scattering-dominated charge transport. The Seebeck coefficient a decreases with increasing carrier concentration (Fig. 3b). The calculated a by the SPB model agrees well with the experimental data before the intrinsic excitation. The m* was estimated to be B6.9 me and almost unchanged at 300 and 800 K, as shown in the Pisarenko plot of Fig. 3c, indicating that the valence band structure has weak dependence on temperature and the dopant type of Hf, Zr and Ti. NATURE COMMUNICATIONS | DOI: 10.1038/ncomms9144 The calculated total area power density for this half-Heusler module is about 2.2 W cm  2, which is significantly higher than other thermoelectric modules28–30 (Supplementary Table 1). The theoretical conversion efficiency is also calculated for comparison (dash line in Fig. 2b), which is higher than the experimental value. The discrepancy could be due to the To corroborate the present results, the prototype high- temperature thermoelectric modules with eight n–p half-Heusler couples were assembled (Fig. 2b) for the first time based on the best n-type ZrNiSn-based alloys (thermoelectric properties are shown in Supplementary Fig. 2) and p-type FeNbSb compounds. The dimensions of the thermoelectric module made from the half-Heusler legs are 20 mm by 20 mm by 10 mm thick. Under conditions of hot/cold-side temperatures of 991 K/336 K, the half- Heusler module exhibited a maximum power output of 8.9 W and 3 NATURE COMMUNICATIONS | DOI: 10.1038/ncomms9144 NATURE COMMUNICATIONS | DOI: 10.1038/ncomms9144 FeNb1-xHfxSb FeNb1-xHfxSb FeNb0.8Ti0.2Sb FeNb1-xHfxSb FeNb1-xHfxSb x=0.08 x=0.10 x=0.12 x=0.14 x =0.08 x =0.10 x =0.12 x =0.14 FeNb1-yZrySb FeNb1-yZrySb FeNb1-yZrySb FeNb1-yZrySb y =0.08 y =0.10 y =0.14 y=0.08 y=0.10 y=0.14 20 16 20 15 10 5 0 20 15 10 5 0 12 8 4 300 600 900 1,200 300 600 900 1,200 9 6 3 0 0.00 0.04 0.08 0.12 0.16 0.00 0.04 0.08 0.12 0.16 T (K) T (K) Dopant content x, y Dopant content x, y  (W m–1 K–1) L (W m–1 K–1) L (W m–1 K–1) (10–2) FeNbSb FeNbSb m s total Lower L 300 K U+B+PD+EP U+B+PD , , , , a b c d Figure 4 | Thermal conductivity for FeNb1  xHfxSb and FeNb1  yZrySb samples. (a) Total thermal conductivity k. (b) Lattice thermal conductivity kL. The solid curves in b are calculated using the Callaway model36,37. For comparison, kL of Ti-doped FeNbSb is also shown19. (c) The calculated disorder parameter G for the samples, where Gm (square) and Gs (circle) are mass and strain field fluctuation disorder parameters, respectively.14,34 Gtotal ¼ Gm þ Gs. (d) Comparison of experimental and calculated kL for the samples at 300 K. The dash and solid curves are calculated without and with electron-phonon scattering, respectively. U, B, PD and EP denote the phonon-phonon Umklapp process, boundary, point-defect and electron-phonon scattering, respectively. FeNb1-xHfxSb FeNb0.8Ti0.2Sb x =0.08 x =0.10 x =0.12 x =0.14 FeNb1-yZrySb y=0.08 y=0.10 y=0.14 20 15 10 5 0 300 600 900 1,200 T (K) L (W m–1 K–1) FeNbSb b FeNb1-xHfxSb x=0.08 x=0.10 x=0.12 x=0.14 FeNb1-yZrySb y =0.08 y =0.10 y =0.14 20 16 12 8 4 300 600 900 1,200 T (K)  (W m–1 K–1) FeNbSb a FeNb1-xHfxSb FeNb1-yZrySb 9 6 3 0 0.00 0.04 0.08 0.12 0.16 Dopant content x, y (10–2) m s total Lower L , , , , c FeNb1-xHfxSb FeNb1-yZrySb 20 15 10 5 0 0.00 0.04 0.08 0.12 0.16 Dopant content x, y L (W m–1 K–1) 300 K U+B+PD+EP U+B+PD d d c Dopant content x, y Figure 4 | Thermal conductivity for FeNb1  xHfxSb and FeNb1  yZrySb samples. (a) Total thermal conductivity k. (b) Lattice thermal conductivity kL. The solid curves in b are calculated using the Callaway model36,37. For comparison, kL of Ti-doped FeNbSb is also shown19. NATURE COMMUNICATIONS | DOI: 10.1038/ncomms9144 (c) The calculated disorder parameter G for the samples, where Gm (square) and Gs (circle) are mass and strain field fluctuation disorder parameters, respectively.14,34 Gtotal ¼ Gm þ Gs. (d) Comparison of experimental and calculated kL for the samples at 300 K. The dash and solid curves are calculated without and with electron-phonon scattering, respectively. U, B, PD and EP denote the phonon-phonon Umklapp process, boundary, point-defect and electron-phonon scattering, respectively. that of FeNbSb, which is a key to the high zT in this composition. phonon scattering of phonons also contributes to the reduced kL for FeNb1  xHfxSb and FeNb1  yZrySb, especially at high doping contents. The similar phenomenon is also found in other thermoelectric materials36. Thus the simultaneously enhanced point-defect and electron–phonon scattering of phonons concurrently contribute to the reduced kL in the heavy-band FeNb1  xHfxSb system. Why is Hf dopant more efficient in suppressing kL of FeNbSb despite of lower optimal content? As aforementioned, high content of dopants will create strong point-defect scattering of phonons, leading to the suppressed kL. Hf doping at Nb sites will deduce more remarkable point-defect scattering than Zr and Ti because of the larger mass and radius differences between Hf and Nb. For comparison, Fig. 4c presents the calculated disorder parameter G (larger G indicates stronger point-defect scattering of phonons14,34,35) for Hf and Zr at Nb sites, which obviously shows that the Hf creates stronger mass and strain field fluctuations, leading to lower kL in FeNb1  xHfxSb. Discussion I In summary, by rationally selecting the heavier dopants at high contents, the interrelated thermoelectric parameters can be decoupled and the simultaneous optimization of electrical power factor and significant reduction in thermal conductivity can be achieved in heavy-band thermoelectric materials. Record-high zT of 1.5 in p-type FeNb1  xHfxSb heavy-band half-Heusler compounds demonstrates the effective optimization strategy for achieving high thermoelectric performance. A prototype thermo- electric module made of n-type ZrNiSn-based alloys and p-type FeNbSb compounds exhibits a high conversion efficiency of 6.2% and a high power density of 2.2 W cm  2 at a temperature difference of 655 K. These findings highlight the realistic prospect of high-temperature thermoelectric modules based on half- Heusler alloys with low cost, excellent mechanical properties and stability. g The kL of the samples was further calculated by the Callaway model19,36,37. Phonon–phonon Umklapp process, grain boundary and point-defect scattering of phonons were firstly considered in the modelling. At low doping content, the calculated kL has a good agreement with the experimental results (Fig. 4d). However, at high doping contents, the calculated kL significantly deviates from the experimentally values, suggesting that some other scattering sources should also contribute to the reduced kL at high Hf or Zr contents. With increasing dopant content, the carrier concentration largely increases up to 1021 cm  3. The electron– phonon interaction, an important part to scatter phonons in narrow semiconductors38, may exist in the p-type FeNbSb heavy-band system. With the electron–phonon scattering evolved, a good agreement between the experimental data and the calculated curves is reached (Fig. 4d). To corroborate this result, temperature dependence of kL was calculated for FeNb1  xHfxSb samples, and there is a good consistency with the experimental kL (Fig. 4b), indicating the enhanced electron– ARTICLE 300 K 800 K 800 K m*=6.9 me a b c d Figure 3 | Thermoelectric properties for FeNb1  xHfxSb and FeNb1  yZrySb samples. (a) Electrical conductivity s. (b) Seebeck coefficient a. The a (c) and power factor a2s and thermal conductivity (d) of Hf- and Zr-doped FeNbSb as a function of carrier concentration, together with the data for Ti-doped FeNbSb19. The solid lines in b–d were calculated by the SPB model. 80 60 40 20 300 600 900 1,200 0 T (K)  (104 Ω–1 m–1) T –1.5 FeNb1-xHfxSb FeNb1-yZrySb x=0.08 x=0.10 x=0.12 x=0.14 y =0.14 y =0.10 y =0.08 a b 300 300 250 150 50 200 100 600 900 1,200 T (K)  (μV K–1) FeNb1-xHfxSb FeNb1-yZrySb x=0.08 x=0.10 x=0.12 x=0.14 y=0.14 y=0.10 y=0.08 b a 300 200 100 400 500 0 0 10 20 30 40 ( ) pH (1020 cm–3)  (μV K–1) Exp. FeNbSb: Hf FeNbSb: Zr FeNbSb: Ti Cal. 300 K 800 K m*=6.9 me c d 6 4 2 0 1 10 100 16 12 8 4 pH (1020 cm–3) 2 (10–3 W m–1 K–2)  (W m–1 K–1) FeNbSb: Hf FeNbSb: Zr FeNbSb: Ti 800 K d c Figure 3 | Thermoelectric properties for FeNb1  xHfxSb and FeNb1  yZrySb samples. (a) Electrical conductivity s. (b) Seebeck coefficient a. The a (c) and power factor a2s and thermal conductivity (d) of Hf- and Zr-doped FeNbSb as a function of carrier concentration, together with the data for Ti-doped FeNbSb19. The solid lines in b–d were calculated by the SPB model. NATURE COMMUNICATIONS | 6:8144 | DOI: 10.1038/ncomms9144 | www.nature.com/naturecommunications & 2015 Macmillan Publishers Limited. All rights reserved. 4 4 ARTICLE NATURE COMMUNICATIONS | 6:8144 | DOI: 10.1038/ncomms9144 | www.nature.com/naturecommunications & 2015 Macmillan Publishers Limited. All rights reserved. & 2015 Macmillan Publishers Limited. All rights reserved. ARTICLE NATURE COMMUNICATIONS | DOI: 10.1038/ncomms9144 ingots were mechanically milled (Mixer Mill MM200, Retsch) for 4 h under argon protection. The obtained powders were loaded into the graphite die and compacted by spark plasma sintering (SPS-1050, Sumitomo Coal Mining Co.) at 1,123 K for 10 min under 65 MPa in vacuum. The as-sintered samples, of which the relative densities were found to be B95%, were annealed at 1,073 K for 3 days. ingots were mechanically milled (Mixer Mill MM200, Retsch) for 4 h under argon protection. The obtained powders were loaded into the graphite die and compacted by spark plasma sintering (SPS-1050, Sumitomo Coal Mining Co.) at 1,123 K for 10 min under 65 MPa in vacuum. The as-sintered samples, of which the relative densities were found to be B95%, were annealed at 1,073 K for 3 days. 14. Yang, J., Meisner, G. P. & Chen, L. Strain field fluctuation effects on lattice thermal conductivity of ZrNiSn-based thermoelectric compounds. Appl. Phys. Lett. 85, 1140–1142 (2004). 15. Pei, Y. Z. et al. Optimum carrier concentration in n-type PbTe thermoelectrics. Adv. Energy Mater. 4, 1400486 (2014). 16. Wang, H., Pei, Y. Z., LaLonde, A. D. & Snyder, G. J. Weak electron-phonon coupling contributing to high thermoelectric performance in n-type PbSe. Proc. Natl Acad. Sci. USA 109, 9705–9709 (2012). Characterization. Phase structures of the samples were investigated by XRD on a RigakuD/MAX-2550PC diffractometer using Cu Ka radiation (l0 ¼ 1.5406 Å). The XRD patterns of FeNb1  xHfxSb and FeNb1  yZrySb show a single phase that can be indexed to the half-Heusler phase with a cubic MgAgAs-type crystal structure (space group, F43m) as shown in Supplementary Fig. 1. The lattice parameter of the samples increases with increasing dopant content as shown in Supplementary Fig. 5. The chemical compositions were checked by electron probe microanalysis (EPMA, JEOL and JXA-8100), which show that the actual compositions are close to the nominal ones (Supplementary Table 1). Scanning electron microscope and energy dispersive X-ray spectroscopy mapping were used to characterize the phase and compositional homogeneity (Supplementary Fig. 6). The average grain size of the sample was determined to be B0.8 mm from the transmission electron ( T G S T ) (S l ) 17. Culp, S. R. et al. Zr,Hf)Co(Sb,Sn) half-Heusler phases as high-temperature (4700C) p-type thermoelectric materials. Appl. Phys. Lett. 93, 022105 (2008). 18. Yu, C. et al. ARTICLE High performance half-Heusler thermoelectric materials Hf1-xZrxNiSn1-ySby prepared by levitation melting and spark plasma sintering. Acta Mater. 57, 2757–2764 (2009). 19. Fu, C. G., Zhu, T. J., Liu, Y. T., Xie, H. H. & Zhao, X. B. Band engineering of high performance p-type FeNbSb based half-Heusler thermoelectric materials for figure of merit zT41. Energy Environ. Sci. 8, 216–220 (2015). p m microscope (FEI, Tecnai G2 F30 S-Twin) image (Supplementary Fig. 6). 20. Schwall, M. & Balke, B. Phase separation as a key to a thermoelectric high efficiency. Phys. Chem. Chem. Phys. 15, 1868–1872 (2013). 21. Chen, S. et al. Effect of Hf concentration on thermoelectric properties of nanostructured N-type half-Heusler materials HfxZr1-xNiSn0.99Sb0.01. Adv. Energy Mater. 3, 1210–1214 (2013). Measurements. The Seebeck coefficient and electrical conductivity from 300 to 1,200 K were measured on a commercial Linseis LSR-3 system using a differential voltage/temperature technique and a d.c. four-probe method. The accuracy is ±5% and ±3%, respectively. The thermal conductivity k was calculated by using k ¼ DrCp, where r is the sample density estimated by the Archimedes method. The thermal diffusivity D and specific heat Cp were measured by a laser flash method on Netzsch LFA457 instrument with a Pyroceram standard (Supplementary Fig. 7). The accuracy is ±3% and ±5%, respectively. The low-temperature Hall coefficients from 20 to 300 K were measured using a Mini Cryogen Free Measurement System (Cryogenic Limited, UK). The carrier concentration pH was calculated by pH ¼ 1/(eRH), where e is the unit charge and RH is the Hall coefficient. The estimated error of Hall coefficient is within ±10%. The carriers mobility mH was calculated by mH ¼ sRH. The samples with highest zT were repeatedly measured in Zhejiang University and Shanghai Institute of Ceramics, Chinese Academy of Science, and the results show good consistency (Supplementary Fig. 8). The high-temperature thermal stability of the sample was checked through the thermogravimetric analysis (Supplementary Fig. 9) and the accuracy is 5%. gy 22. Graf, T., Felser, C. & Parkin, S. S. P. Simple rules for the understanding of Heusler compounds. Prog. Solid State Chem. 39, 1–50 (2011). 23. Chen, S. & Ren, Z. Recent progress of half-Heusler for moderate temperature thermoelectric applications. Mater. Today 16, 387–395 (2013). 24. Xie, W. et al. Recent advances in nanostructured thermoelectric half-Heusler compounds. Nanomaterials 2, 379–412 (2012). 25. Schmitt, J., Gibbs, Z. M., Snyder, G. J. & Felser, C. References 33. Xie, H. H. et al. The intrinsic disorder related alloy scattering in ZrNiSn half-Heusler thermoelectric materials. Sci. Rep. 4, 6888 (2014). 1. Snyder, G. J. & Toberer, E. S. Complex thermoelectric materials. Nat. Mater. 7, 105–114 (2008). 34. Wang, H., LaLonde, A. D., Pei, Y. Z. & Snyder, G. J. The criteria for beneficial disorder in thermoelectric solid solutions. Adv. Funct. Mater. 23, 1586–1596 (2013). 2. Zhao, L. D. et al. Ultralow thermal conductivity and high thermoelectric figure of merit in SnSe crystals. Nature 508, 373–377 (2014). y 3. Pei, Y. Z. et al. Convergence of electronic bands for high performance bulk thermoelectrics. Nature 473, 66–69 (2011). 35. Abeles, B. Lattice thermal conductivity of disordered semiconductor alloys at high temperatures. Phys. Rev. 131, 1906–1911 (1963). 4. Heremans, J. P. et al. Enhancement of thermoelectric efficiency in PbTe by distortion of the electronic density of states. Science 321, 554–557 (2008). 36. Shi, X. Y., Pei, Y. Z., Snyder, G. J. & Chen, L. Optimized thermoelectric properties of Mo3Sb7-xTex with significant phonon scattering by electrons. Energy Environ. Sci. 4, 4086–4095 (2011). 5. Biswas, K. et al. High-performance bulk thermoelectrics with all-scale hierarchical architectures. Nature 489, 414–418 (2012). hierarchical architectures. Nature 489, 414–418 (2012). 37. Callaway, J. Model for lattice thermal conductivity at low temperatures. Phys. Rev. 113, 1046–1051 (1959). 6. Toberer, E. S., Zevalkink, A. & Snyder, G. J. Phonon engineering through crystal chemistry. J. Mater. Chem. 21, 15843–15852 (2011). 38. Delaire, O. et al. Phonon softening and metallization of a narrow-gap semiconductor by thermal disorder. Proc. Natl Acad. Sci. USA 108, 4725–4730 (2011). 7. Ioffe, A. F. Semiconductor Thermoelements and Thermoelectric Cooling (Infosearch, 1957). y 39. Wang, H., Schechtel, E., Pei, Y. Z. & Snyder, G. J. High thermoelectric efficiency of n-type PbS. Adv. Energy Mater. 3, 488–495 (2013). 8. Goldsmid, H. J. Introduction to Thermoelectricity (Springer, 2010). 9. Sales, B. C., Mandrus, D. & Williams, R. K. Filled skutterudite antimonides: a new class of thermoelectric materials. Science 272, 1325–1328 (1996). 40. Vining, C. B., Laskow, W., Hanson, J. O., Vanderbeck, R. R. & Gorsuch, P. D. Thermoelectric properties of pressure-sintered Si0.8Ge0.2 thermoelectric alloys. J. Appl. Phys. 69, 4333–4340 (1991). 10. Tritt, T. M. Holey and unholey semiconductors. Science 283, 804–805 (1999). 11. Xie, H. H. et al. Beneficial contribution of alloy disorder to electron and phonon transport in half-Heusler thermoelectric materials. Adv. Funct. Mater. 23, 5123–5130 (2013). ARTICLE Resolving the true band gap of ZrNiSn half-Heusler thermoelectric materials. Mater. Horiz. 2, 68–75 (2015). 26. Joshi, G. et al. NbFeSb-based p-type half-Heuslers for power generation applications. Energy Environ. Sci. 7, 4070–4076 (2014). 27. Fu, C. G. et al. High band degeneracy contributing to high thermoelectric performance in p-type half-Heusler compounds. Adv. Energy Mater. 4, 1400600 (2014). 28. Bartholome´, K. et al. Thermoelectric modules based on half-Heusler materials produced in large quantities. J. Electron. Mater. 43, 1775–1781 (2014). Thermoelectric module. For the eight n–p couple prototype module assembly, the cylindrical half-Heusler pucks were diced into legs of square 4 mm by 4 mm. Then the n-type and p-type half-Heusler legs were connected to metallic interconnects using high-temperature braze. The modules contain a total of 16 legs joined into 8 n–p couples, all connected electrically in series and thermally in parallel. The power output, internal resistance and energy conversion efficiency of the half-Heusler prototype modules were evaluated in vacuum by using PEM-2 testing system (ULVAC-RIKO, Inc.). The electrodes coexist stably with p/n half-Heusler alloys in the module’s working temperature range from 300 to 1,000 K. The accuracy of measurement for output power and conversion efficiency is about 10–15%. 29. Mikami, M., Kobayashi, K. & Tanaka, S. Power generation performance of thermoelectric module consisting of Sb-doped Heusler Fe2VAl sintered alloy. Mater. Trans. 52, 1546–1548 (2011). 30. Salvador, J. R. et al. Conversion efficiency of skutterudite-based thermoelectric modules. Phys. Chem. Chem. Phys. 16, 12510–12520 (2014). 31. Liu, X. H. et al. Low electron scattering potentials in high performance Mg2Si0.45Sn0.55 based thermoelectric solid solutions with band convergence. Adv. Energy Mater. 3, 1238–1244 (2013). Adv. Energy Mater. 3, 1238–1244 (2013). 32. May, A. F., Toberer, E. S., Saramat, A. & Snyder, G. J. Characterization and analysis of thermoelectric transport in n-type Ba8Ga16  xGe30 þ x. Phys. Rev. B 80, 125205 (2009). Methods Synthesis. The ingots with nominal composition FeNb1  xHfxSb and FeNb1  yZrySb (x, y ¼ 0–0.16) were prepared by levitation melting of stoichio- metric amount of Fe (piece, 99.97%), Nb (foil, 99.8%), Hf (piece, 99.99%), Zr (foil, 99.99%) and Sb (block, 99.999%) under an argon atmosphere for several minutes. The ingots were remelted for four times to ensure homogeneity. The obtained 5 & 2015 Macmillan Publishers Limited. All rights reserved. ARTICLE ARTICLE NATURE COMMUNICATIONS | DOI: 10.1038/ncomms9144 prototype thermoelectric module and measured its conversion efficiency. C.F., S.B., L.C., X.Z. and T.Z. wrote the manuscript. 45. Zhu, T. J., Gao, H., Chen, Y. & Zhao, X. B. Ioffe–Regel limit and lattice thermal conductivity reduction of high performance (AgSbTe2)15(GeTe)85 45. Zhu, T. J., Gao, H., Chen, Y. & Zhao, X. B. Ioffe–Regel limit and lattice thermal conductivity reduction of high performance (AgSbTe2)15(GeTe)85 thermoelectric materials. J. Mater. Chem. A 2, 3251–3256 (2014). 46. Shi, X. et al. Multiple-filled skutterudites: High thermoelectric figure of merit through separately optimizing electrical and thermal transports. J. Am. Chem. Soc. 133, 7837–7846 (2011). This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ Competing financial interests: The authors declare no competing financial interests. Reprints and permission information is available online at http://npg.nature.com/ reprintsandpermissions. NATURE COMMUNICATIONS | 6:8144 | DOI: 10.1038/ncomms9144 | www.nature.com/naturecommunications & 2015 Macmillan Publishers Limited. All rights reserved. Supplementary Information accompanies this paper at http://www.nature.com/ naturecommunications 47. Brown, S. R., Kauzlarich, S. M., Gascoin, F. & Snyder, G. J. Yb14MnSb11: New high efficiency thermoelectric material for power generation. Chem. Mater. 18, 1873–1877 (2006). Competing financial interests: The authors declare no competing financial interests. Acknowledgements g We would like to thank Professor Xun Shi and Mr Dudi Ren from Shanghai Institute of Ceramics for the repeated measurement of thermoelectric properties and device simulation, respectively. This work was supported by the National Basic Research Program of China (2013CB632500), the Nature Science Foundation of China (51171171), the Program for New Century Excellent Talents in University (NCET-12- 0495) and the Key Research Program of Chinese Academy of Sciences (KGZD-EW-T06). How to cite this article: Fu, C. et al. Realizing high figure of merit in heavy-band p-type half-Heusler thermoelectric materials. Nat. Commun. 6:8144 doi: 10.1038/ncomms9144 (2015). NATURE COMMUNICATIONS | 6:8144 | DOI: 10.1038/ncomms9144 | www.nature.com/naturecommunications & 2015 Macmillan Publishers Limited All rights reserved References pp y 41. Fu, C. G. et al. Electron and phonon transport in Co-doped FeV0.6Nb0.4Sb half-Heusler thermoelectric materials. J. Appl. Phys. 114, 134905 (2013). 42. Pei, Y. Z. et al. Improving thermoelectric performance of caged compounds through light-element filling. Appl. Phys. Lett. 95, 042101 (2009). 12. Yang, J. et al. Trends in electrical transport of p-type skutterudites RFe4Sb12 (R ¼ Na, K, Ca, Sr, Ba, La, Ce, Pr, Yb) from first-principles calculations and Boltzmann transport theory. Phys. Rev. B 84, 235205 (2011). g g g pp y 43. Bux, S. K. et al. Glass-like lattice thermal conductivity and high thermoelectric efficiency in Yb9Mn4.2Sb9. J. Mater. Chem. A 2, 215–220 (2014). l h h l f h b d 13. Yang, J. et al. Evaluation of half-Heusler compounds as thermoelectric materials based on the calculation electrical transport properties. Adv. Funct. Mater. 18, 2880–2888 (2008). 44. He, Y. et al. High thermoelectric performance in non-toxic earth abundant copper sulfide. Adv. Mater. 26, 3974–3978 (2014). NATURE COMMUNICATIONS | 6:8144 | DOI: 10.1038/ncomms9144 | www.nature.com/naturecommunications 6 & 2015 Macmillan Publishers Limited. All rights reserved. Additional information Supplementary Information accompanies this paper at http://www.nature.com/ naturecommunications Author contributions C.F. and T.Z. designed the experiment. C.F. and Y.L. prepared the samples and carried out thermoelectric property measurements. C.F. and T.Z. analysed the experimental data and established the thermoelectric transport model. S.B., Y.T. and L.C. fabricated the 7 7
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The Legacy of Thomas Hodgkin Is Still Relevant 150 Years After His Death. Nothing of Humanity Was Foreign to Him
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Rambam Maimonides Medical Journal Rambam Maimonides Medical Journal HISTORY OF MEDICINE Open Access HISTORY OF MEDICINE Open Access Eldad J. Dann, M.D.1,2,3* 1Department of Hematology and Bone Marrow Transplantation, Rambam Health Care Campus, Haifa, Israel; 2Blood Bank and Transfusion Service, Rambam Health Care Campus, Haifa, Israel; and 3Bruce Rappaport Faculty of Medicine, Technion–Israel Institute of Technology, Haifa, Israel ABSTRACT Current leading figures in medical science usually focus on very specific topics and use cutting-edge technologies to broaden our knowledge in the field. The working environment of the nineteenth century was very different. Medical giants of that time such as Rudolph Virchow and Thomas Hodgkin had a wide- ranging scope of research and humanitarian interests and made enormous contributions to a variety of core areas of medicine and the well-being of mankind. The year 2016 marked the 150th anniversary of the death of Dr Thomas Hodgkin. Even a brief review of his life and work proves the current relevance of the outstanding deeds of this exceptional physician, medical educator, and defender of human rights for the poor and underprivileged; his vision was far ahead of his time. EY WORDS: Thomas Hodgkin, Hodgkin disease, philanthropy, protection of human rights This article aims to elaborate on the features and deeds of Thomas Hodgkin that continue to make him a source of admiration and inspiration now- adays. April 4, 2016 marked the 150th anniversary of the death of Dr Thomas Hodgkin (1798–1866) (Figure 1). Three biographies1–3 and many articles4–7 have been written about Thomas Hodgkin. Citation: Dann EJ. The Legacy of Thomas Hodgkin Is Still Relevant 150 Years After His Death. Nothing of Humanity Was Foreign to Him. Rambam Maimonides Med J 2017;8 (1):e0009. doi:10.5041/RMMJ.10284 g 7; ( ) 9 5 4 / 4 Copyright: © 2017 Dann. This is an open-access article. All its content, except where otherwise noted, is distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/3.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Conflict of interest: No potential conflict of interest relevant to this article was reported Copyright: © 2017 Dann. This is an open-access article. All its content, except where otherwise noted, is distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/3.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. C fli t f i t t N t ti l fli t f i t t l t t thi ti l t d * E-mail: e_dann@rambam.health.gov.il Rambam Maimonides Med J | www.rmmj.org.il January 2017  Volume 8  Issue 1  e0009 January 2017  Volume 8  Issue 1  e0009 The Legacy of Thomas Hodgkin Is Still Relevant 150 Years After His Death. Nothing of Humanity Was Foreign to Him Eldad J. Dann, M.D.1,2,3* Rambam Maimonides Med J | www.rmmj.org.il 1 Legacy of Thomas Hodgkin Figure 1. The Grave of Dr Thomas Hodgkin (1798– 1866). April 4, 2016, the 150th anniversary of Dr Hodgkin’s death. Photo by E. Dagoul. leadership in his community and for argumentative opposition to the British authorities. Thomas Hodgkin designed scientific approaches for collecting data on endangered societies. In 1833, Dr Richard King, a renowned surgeon and naturalist of his time, took part in the expedition to the shores of the Arctic Ocean under the command of Captain G. Back of the Royal Navy. Hodgkin wrote to Dr King asking him to provide first-hand data from numerous observations and independent sources, thus ensuring the accuracy of reports and avoiding biased secondary sources, like traders and missionaries. Hodgkin founded the Aborigine Protection Society in 1837 and played a major role in the foundation of the Ethnological Society in collaboration with James Cowles Prichard. Both of them were on the committee that composed a “Manual of Ethnological Inquiry” in 1843. Hodgkin was also an advisor to the Buxton’s Select Parliamentary Committee on Aborigines’ Protection and authored several articles and a book on these issues (e.g. “A letter on Negro emancipation and American colonization,” “An inquiry into the merits of American colonization society,” and “On British African colonization society”). Figure 1. The Grave of Dr Thomas Hodgkin (1798– 1866). April 4, 2016, the 150th anniversary of Dr Hodgkin’s death. Photo by E. Dagoul. April 4, 2016, the 150th anniversary of Dr Hodgkin’s death. Photo by E. Dagoul. Thomas Hodgkin was born in Pentonville, North London, in a pious family belonging to the Society of Friends (Quakers). He was educated by his father, a teacher in the community. Hodgkin’s first workplace was with the local apothecary, starting as an apprentice under the mentorship of William Allen (1770–1843). While working there, Hodgkin was introduced to the three areas that later became his main life interests: the anti-slavery campaign that Allen had been involved in since 1807; medicine— Allen had been lecturing chemistry at Guy’s Hospital, London, for 24 years; and philanthropy— Allen had been operating a soup kitchen for the poor of Spitalfields and had been active in promoting education for the poor and underprivileged. In 1863, Thomas Hodgkin undertook a humani- tarian mission to North Africa under the auspices of his lifelong friend, Sir Moses Montefiore. Rambam Maimonides Medical Journal January 2017  Volume 8  Issue 1  e0009 Rambam Maimonides Med J | www.rmmj.org.il cylinder,” commonly called “stethoscope,” as the means of ascertaining the changes that disease produced in the organs of respiration and circula- tion (Figure 2). It was the first introduction of the stethoscope to the British academic medicine; and this was done by a 24-year-old medical student! Hodgkin described the clinical pathological findings in bronchiectasis, tuberculosis, valvular diseases, and the use of auscultation during pregnancy for localizing the fetus. Between 1825 and 1828, while serving as the cur- ator of the Anatomical Museum at Guy’s Hospital, Thomas Hodgkin expanded the museum collection from 500 to 3,000 specimens. Each specimen was accompanied with a label, containing information on clinical symptoms and physical signs, a reference to the inspection book where the full case and post- mortem inspection were recorded, and the name of the presenting physician. Despite such an enormous contribution, he was actually deprived of the right to use the collected materials after he left Guy’s Hospital. From the first steps in his career, Thomas Hodgkin devoted a great part of his time to taking care of the poor. In 1825, two years after his graduation from the University of Edinburgh Medical School, he was appointed to the position of physician at the London Dispensary (a facility dealing with medical problems of underprivileged). At the same time, as a favor to Sir Moses Montefiore, Hodgkin served (until 1831) as a physician at the Society of the United Israelites and the Society of United Sisters—two Jewish philanthropic organizations. Based on this experience and in an effort to improve the medical care of this population, Hodgkin wrote an essay, “On the Mode of Selecting and Remunerating Medical Men for Professional Attendance of the Poor.” Thomas Hodgkin was the first to describe many clinical and pathological correlations. In his work “On the Retroversion of the Valves of the Aorta,” published in the London Medical Gazette in 1829, he described aortic valve incompetence. He also reported the consequence of acute appendicitis that led to ruptured appendix, causing peritonitis and death of a young medical student at Guy’s Hospital. Hodgkin characterized differences between benign cysts and adenocarcinoma and reported a case of recurrence of uterine carcinoma a year after extirpation of the uterus, with local advancement of the tumor that led to intestinal obstruction. Rambam Maimonides Med J | www.rmmj.org.il These two extraordinary persons—one a devoted member of the Society of Friends (Quakers), the other an observant Sephardic Jew—shared a wide range of humanitarian interests. Hodgkin presented an overview on the physical geography of North Africa to the Royal Geographical Society and included these materials in the book Narrative of a Journey to Morocco in 1863 and 1864.8 The book, which came out after Hodgkin’s death, was dedicated to Sir Moses Montefiore. From his early adulthood, Thomas Hodgkin was passionate about the protection of human rights in general and of indigenous societies in particular. At the age of 21, he composed an essay, “On the Promotion of Civilization.” In this plea on behalf of endangered North American Indians he wrote: “A comparison between ancient and modern times as far as relates to the influence which civilized nations have had upon the uncivilized shows that the last five hundred years, those under the name of Christians have done far more to degrade, corrupt and exterminate their uncivilized fellow creatures than all the heathen world, since the creation of man. Wherever they have gone they have introduced new vices and new diseases.” Hodgkin offered to pay for the education of a young North American Indian, aiming to provide this person with tools for The contribution of Thomas Hodgkin to medi- cine was enormous. He started medical studies at Guy’s Hospital. After walking the ward for 2 years, he was admitted to the University of Edinburgh. In 1822, he went to France for a year of elective studies. He was privileged to work with Professor René Laennec at patients’ bedside and in the autopsy room, where he concentrated on the evaluation of clinical and pathological correlations. On his way back from France to Edinburgh, Hodgkin renewed his relationship with Guy’s Hospital. He was invited to give a lecture to the Hospital Physical Society on “mediate auscultation,” or the use of “Laennec’s January 2017  Volume 8  Issue 1  e0009 2 Legacy of Thomas Hodgkin proper disposal of sewage. Hodgkin also warned of the dangers of overeating, excessive alcohol use, occupational dust exposure, and tobacco use, including passive smoking, stating that “smoking encroaches on the freedom and comfort of others.” His prescience was amazing, given that the first sign prohibiting smoking in Guy’s Hospital was put up in 1881, 15 years after Hodgkin’s death. Rambam Maimonides Med J | www.rmmj.org.il This case was published by James Blundell, a surgeon and a gynecologist who is remembered for the introduction of blood transfusion into clinical medicine. In this publication, Dr Blundell warmly acknowledged that “Dr. Hodgkin’s talents and great accuracy were well known to the profession.”10 Realizing that education for healthy behavior and abstinence from smoking was an effective way of maintaining good health, Thomas Hodgkin deliv- ered (in 1829) a series of four lectures to laymen at the Mechanics’ Institute, Spitalfields, which he fur- ther published under the title “Lectures on the Means of Promoting and Preserving Health.”9 He pointed out the importance of clean air, bathing, and Figure 2. The Laennec Cylinder Used by Thomas Hodgkin. The Laennec cylinder, commonly called “stethoscope,” was introduced by Thomas Hodgkin to Guy’s Hospital. This stethoscope, used by Thomas Hodgkin, is exhibited at Gordon Museum, King’s College, London, Guy’s Campus, Hodgkin House. Photo by E.J. Dann. In 1832, Thomas Hodgkin published a paper first describing the clinical entity of the absorbent gland and spleen in six patients (Figure 3). Dr Samuel Wilks, who included some of Hodgkin’s patients in his own series of case reports, suggested in his review, published in 1865, naming this disease after Hodgkin. In 1926, Herbert Fox confirmed micro- scopically that three of the six patients originally reported by Hodgkin actually did have “Hodgkin’s disease.” Figure 2. The Laennec Cylinder Used by Thomas Hodgkin. The Laennec cylinder, commonly called “stethoscope,” was introduced by Thomas Hodgkin to Guy’s Hospital. This stethoscope, used by Thomas Hodgkin, is exhibited at Gordon Museum, King’s College, London, Guy’s Campus, Hodgkin House. Photo by E.J. Dann. Thomas Hodgkin has made a vital contribution to the curriculum of medical education, a contribu- Rambam Maimonides Medical Journal Rambam Maimonides Medical Journal January 2017  Volume 8  Issue 1  e0009 3 Legacy of Thomas Hodgkin Figure 3. Three of the Original Post-Mortem Specimens of Organs Removed from Patients Who Succumbed to the Disease Currently Known as Hodgkin Lymphoma. The specimens are exhibited at Gordon Museum, King’s College, London, Guy’s Campus, Hodgkin House. Photo by E.J. Dann. Figure 3. Three of the Original Post-Mortem Specimens of Organs Removed from Patients Who Succumbed to the Disease Currently Known as Hodgkin Lymphoma. The specimens are exhibited at Gordon Museum, King’s College, London, Guy’s Campus, Hodgkin House. Photo by E.J. Dann. tion that remains largely intact to this day. In 1827, he lectured at the opening of the academic year. His presentation entitled “On medical education” was a provocative talk on the superiority of the Contin- ental way of studying medicine compared to the English system. The lecture was happily cited in The Lancet, which was very critical about the English health care system at that time. In the same year, Hodgkin introduced the course of morbid anatomy to Guy’s Hospital, a course that was initially option- al, but which in time developed into the pathology course that became an integral and essential part of the curriculum at every medical school throughout the world. Hodgkin wrote a two-volume textbook, On the Morbid Anatomy of the Serous and Mucous Membranes. While the first part was published in 1836, when he was still at Guy’s, the second volume was issued only in 1840. initiated by Sir Moses Montefiore. Donations to the fund were not limited to private sources only; large contributions were also made by the governments of the United Kingdom, France, and Scandinavian countries. The fund-raising committee supplied medical aid to the survivors of the massacre that happened in Syria and Lebanon following ethnic riots in 1860. The committee used the remaining money to establish asylums for widows and orphans. This gives another proof that Hodgkin’s deeds are relevant today when the world is facing a humani- tarian crisis, with millions of refugees fleeing persecution and violence. tion that remains largely intact to this day. In 1827, he lectured at the opening of the academic year. His presentation entitled “On medical education” was a provocative talk on the superiority of the Contin- ental way of studying medicine compared to the English system. Rambam Maimonides Medical Journal January 2017  Volume 8  Issue 1  e0009 Rambam Maimonides Medical Journal The lecture was happily cited in The Lancet, which was very critical about the English health care system at that time. In the same year, Hodgkin introduced the course of morbid anatomy to Guy’s Hospital, a course that was initially option- al, but which in time developed into the pathology course that became an integral and essential part of the curriculum at every medical school throughout the world. Hodgkin wrote a two-volume textbook, On the Morbid Anatomy of the Serous and Mucous Membranes. While the first part was published in 1836, when he was still at Guy’s, the second volume was issued only in 1840. Thomas Hodgkin died in Jaffa on April 4, 1866. He was buried in the Anglican cemetery, and his friend Montefiore shipped a red granite obelisk stone to be placed on his tomb (Figure 4). The inscription on the tombstone says that it was erected by Sir Moses Montefiore, Bart. “in commemoration of a friendship of more than 40 years and many journeys taken together in Europe, Asia and Africa.” The epitaph on the tomb is inscribed by Hodgkin’s Thomas Hodgkin used his medical and organiza- tional skills for the benefit of humanitarian missions around the world. He played a pivotal part in the foundation of the British Syrian Relief Fund Rambam Maimonides Medical Journal January 2017  Volume 8  Issue 1  e0009 4 Legacy of Thomas Hodgkin Figure 4. The Inscription on the Obelisk Stone Placed on Thomas Hodgkin’s Tomb. Photo by E.J. Dann. Figure 4. The Inscription on the Obelisk Stone Placed on Thomas Hodgkin’s Tomb. Photo by E.J. Dann. 5. Geller SA, Taylor CR. Thomas Hodgkin: the “man” and “his disease”: humani nihil a se alienum putabit (nothing human was foreign to him). Virchows Arch 2013;463:353–65. Full Text 5. Geller SA, Taylor CR. Thomas Hodgkin: the “man” and “his disease”: humani nihil a se alienum putabit (nothing human was foreign to him). Virchows Arch 2013;463:353–65. Full Text 5. Geller SA, Taylor CR. Thomas Hodgkin: the “man” and “his disease”: humani nihil a se alienum putabit (nothing human was foreign to him). Virchows Arch 2013;463:353–65. Full Text deeply sorrowing widow and brother to record their irreparable loss ‘‘In the faith and hope of the gospel. Humani nihil a se alienum putabat” (Nothing of humanity was foreign to him). Rambam Maimonides Medical Journal Hodgkin used a similar inscription on his thesis dedicated to the scientist whom he admired greatly, Alexander von Humboldt. 6. Leibowitz JO. Thomas Hodgkin (1798–1866). Isr J Med Sci 1967;3:501–4. 6. 7. Soit I, Ben-Arush MW. [Two-hundred years since the birth of Thomas Hodgkin (1798–1886)]. Harefuah 1998;135:558-60. Hebrew. January 2017  Volume 8  Issue 1  e0009 Rambam Maimonides Medical Journal REFERENCES 8. Hodgkin T. Narrative of a Journey to Morocco in 1863 and 1864. London, UK: T. Cautley Newby; 1866. 1. Kass AM, Kass EH. Perfecting the World: The Life and Times of Dr. Thomas Hodgkin (1798–1866). Boston, MA: Harcourt Brace Jovanovich; 1988. 1. Kass AM, Kass EH. Perfecting the World: The Life and Times of Dr. Thomas Hodgkin (1798–1866). Boston, MA: Harcourt Brace Jovanovich; 1988. 9. Hodgkin T. Lectures on the Means of Promoting and Preserving Health. London, UK: Cornhill Darton & Harvey Highly Fry; 1835. 2. Rosenfeld LR. Thomas Hodgkin: Morbid Anatomist and Social Activist. Lanham, MD: Madison Books; 1992. 2. Rosenfeld LR. Thomas Hodgkin: Morbid Anatomist and Social Activist. Lanham, MD: Madison Books; 1992. 10. Blundell J. Examination of the body of Mrs. Moulden aged about 50 years. Lancet 1829;12:215–18. Full Text 3. Rose M. Curator of the Dead, Thomas Hodgkin (1798–1866). London, UK: Peter Owen; 1981. 3. Rose M. Curator of the Dead, Thomas Hodgkin (1798–1866). London, UK: Peter Owen; 1981. 4. Stone MJ. Thomas Hodgkin: medical immortal and uncompromising idealist. Proc (Bayl Univ Med Cent) 2005;18:368-75. 4. Stone MJ. Thomas Hodgkin: medical immortal and uncompromising idealist. Proc (Bayl Univ Med Cent) 2005;18:368-75. Rambam Maimonides Medical Journal 5
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Correlated duplications and losses in the evolution of palmitoylation writer and eraser families
BMC evolutionary biology
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© The Author(s). 2017 Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. Wittouck and van Noort BMC Evolutionary Biology (2017) 17:83 DOI 10.1186/s12862-017-0932-0 Wittouck and van Noort BMC Evolutionary Biology (2017) 17:83 DOI 10.1186/s12862-017-0932-0 Abstract Background: Protein post-translational modifications (PTMs) change protein properties. Each PTM type is associated with domain families that apply the modification (writers), remove the modification (erasers) and bind to the modified sites (readers) together called toolkit domains. The evolutionary origin and diversification remains largely understudied, except for tyrosine phosphorylation. Protein palmitoylation entails the addition of a palmitoyl fatty acid to a cysteine residue. This PTM functions as a membrane anchor and is involved in a range of cellular processes. One writer family and two erasers families are known for protein palmitoylation. Results: In this work we unravel the evolutionary history of these writer and eraser families. We constructed a high- quality profile hidden Markov model (HMM) of each family, searched for protein family members in fully sequenced genomes and subsequently constructed phylogenetic distributions of the families. We constructed Maximum Likelihood phylogenetic trees and using gene tree rearrangement and tree reconciliation inferred their evolutionary histories in terms of duplication and loss events. We identified lineages where the families expanded or contracted and found that the evolutionary histories of the families are correlated. The results show that the erasers were invented first, before the origin of the eukaryotes. The writers first arose in the eukaryotic ancestor. The writers and erasers show co-expansions in several eukaryotic ancestral lineages. These expansions often seem to be followed by contractions in some or all of the lineages further in evolution. Conclusions: A general pattern of correlated evolution appears between writer and eraser domains. These co-evolution patterns could be used in new methods for interaction prediction based on phylogenies. Keywords: Post-translational modifications, Phylogenetic reconstruction, Tree reconciliation, Gene duplications, Gene losses, Correlated evolution Correlated duplications and losses in the evolution of palmitoylation writer and eraser families Stijn Wittouck1,2 and Vera van Noort1* * Correspondence: vera.vannoort@kuleuven.be 1Centre of Microbial and Plant Genetics, KU Leuven, Leuven, Belgium Full list of author information is available at the end of the article Background of lipids can function as lipid anchors [31], of which acyl groups and prenyl groups anchor proteins to the cytosolic side of a membrane. These acyl and prenyl groups often work together for stable and location-specific membrane attachment. Palmitoylation has a special position among them, as it is the only fully reversible lipid PTM, allowing for dynamics and regulation of protein-membrane interactions. Protein palmitoylation is a PTM that involves the addition of a 16-carbon saturated fatty acid, called palmitate, to a cysteine residue in a protein [7]. Due to the discovery of the palmitoylation writer enzyme family in the early 2000s and the recent developments in the application of large- scale MS to study various PTMs, including palmitoylation, this PTM has only recently been studied intensively. The primary function of the cysteine-attached palmitoyl group is to serve as a lipid anchor on soluble proteins, turning them into peripheral membrane proteins. Different classes In addition to peripheral membrane proteins, integral membrane proteins are also frequently palmitoylated. Palmitoylated proteins are implicated in at least four classes of cellular processes. The first is the attachment of soluble proteins to the membrane and their localization to specific membrane compartments. The second function is the traf- ficking of membrane proteins between organelles and/or the plasma membrane (PM), and the third is the targeting * Correspondence: vera.vannoort@kuleuven.be 1Centre of Microbial and Plant Genetics, KU Leuven, Leuven, Belgium Full list of author information is available at the end of the article * Correspondence: vera.vannoort@kuleuven.be 1Centre of Microbial and Plant Genetics, KU Leuven, Leuven, Belgium Full list of author information is available at the end of the article Wittouck and van Noort BMC Evolutionary Biology (2017) 17:83 Page 2 of 12 Page 2 of 12 of membrane proteins to specific parts of the PM such as postsynaptic clusters in neurons or lipid rafts. The fourth function is the stabilization of transmembrane proteins. granules in neurons. These lipofuscin granules are com- posed of residues from lysosomal digestion. The nature of infantile NCL as lysosomal storage disorder seems very compatible with the function of PPT1 as a lysosomal enzyme. In non-diseased individuals, the protein is glyco- sylated at three places and transported to the lysosomes via the mannose 6-phosphate (M6P) pathway [24]. Never- theless, many studies have shown that PPT1 is also impli- cated in processes outside of the lysosome. Background The APT and PPT families are sometimes situated within the serine hydrolase superfamily [38]. Similarly to tyrosine phosphorylation, the very first form of lysine acetylation was also probably accidental. Acetyl- ation has been shown to occur non-enzymatically in vitro and probably also in vivo [44]. In E. coli, acetylation levels reflect levels of acetyl-CoA present in the cell. This cofactor reflects, in turn, the nutrient status of the cell due to its central position in cellular metabolism. Deacetylation is performed by sirtuins, which allows for further regulation (i.e. in response to other signals than acetyl-CoA levels). The earliest acetylation system in the last universal common ancestor could have been similar to this system in E. coli. In this evolutionary scenario, the acetylation writer and reader domains have been later additions to this primitive but already functional PTM system using only eraser enzymes. The APTs are cytosolic proteins [7]. Three of them have been found in humans: APT1, APTL1 and APT2. Origin- ally they were identified as lysophospholipases (enzymes that deacylate monoacylated phospholipids), but recently they have all been found to perform depalmitoylation. APT1 is the best studied example [45]. It deacylates per- ipheral as well as integral membrane proteins, the classic example being signaling proteins of the Ras family. It shows some selectivity for substrates, and its efficiency varies across its substrates. It is strongly conserved among eukaryotes and, as opposed to proteins of the PPT and DHHC families, also present in prokaryotic species. While for some PTM types like tyrosine phosphorylation and lysine acetylation there have been speculations on their stepwise origin, this is not the case for most of the PTM types, including palmitoylation. In this work we study the ori- gin and evolution of the palmitoylation toolkit enzymes. The main aims are to identify lineage-specific family expansions and contractions and relate those to protein palmitoylation functionality and secondly to identify if the evolutionary his- tories of palmitoylation toolkit enzymes are correlated. If more studies like this accumulate it will become clear if the evolution of PTM systems on the long timescale follows gen- eral trends, such starting out as an accidental modification that gives rise to erasers as first of the toolkit domains. Enzymes of the PPT family have been shown to be targeted to the lysosomes [45]. They are conserved in eukaryotes. Humans have two of them: PPT1 and PPT2. Background In neurons, the enzyme has sometimes been found in synaptic vesi- cles. It is often secreted (also in non-neuronal cells) and endocytosed again via the M6P receptor. However, much of the function of the protein remains to be discovered. p The principal protein family that is responsible for pro- tein palmitoylation is the DHHC family of enzymes [18]. These are enzymes located in the membranes of the endo- membrane system. They catalyze the transfer of a palmi- toyl group from palmitoyl-CoA to a cysteine residue, forming a thioester bond. The first proteins of this family were discovered recently in yeast, and since then the fam- ily was found to be present in all eukaryotic species, with occurrences per genome ranging from less than ten in fungi to more than 20 in other eukaryotes [29]. The family is defined by its 51 residue DHHC domain, which is a variant of the C2H2 zinc finger motif. The DHHC domain containing proteins are characterized by i) a conserved sequence motif consisting of the residues aspartate, histi- dine, histidine and cysteine (DHHC) ii) six conserved cys- teines iii) four to six transmembrane domains, the DHHC domain itself being located between two pairs of these on the cytosolic side of the membrane. This is compatible with the palmitate anchoring proteins to the intracellular side of the membrane in most cases. A lot less is known about protein depalmitoylation than is known about palmitoylation; it is very likely that other depalmitoylating enzymes remain to be discovered [7]. Explaining the seemingly irreducible complexity of writer- eraser-reader systems is an important challenge that needs to be addressed for every PTM type under investigation. In the case of tyrosine phosphorylation, it has been speculated that primitive PTPs in species without PTKs or reader do- mains are active to dephosphorylate Tyr residues that have been accidentally phosphorylated by promiscuous Ser/Thr kinases [30]. A prototypical example of this phenomenon is seen in Saccharomyces cerevisiae, where accidentally occur- ring pTyr residues exert unwanted allosteric effects, causing selective pressure for their removal [28]. Two small protein families are currently known to per- form protein depalmitoylation: the acyl protein thioes- terases (APTs) and protein palmitoyl thioesterases (PPTs) [7, 45]. In a structural/evolutionary classification of protein families, both are part of the alpha/beta hydrolase super- family [32]. They make use of a nucleophile-acid-histidine catalytic triad. Background They can both catalyze the depalmitoylation of palmitoyl- CoA, but only PPT1 is capable of depalmitoylating proteins. It has been shown that PPT2 is incapable of protein depalmitoylation [3]. PPT1 has been heavily stud- ied because it has been identified as the causative gene of the disease infantile neuronal ceroid lipofuscinosis [24]. Neuronal ceroid lipofuscinoses (NCL) are a set of diseases characterized by an aggregation of so-called lipofuscin Wittouck and van Noort BMC Evolutionary Biology (2017) 17:83 Page 3 of 12 Page 3 of 12 Page 3 of 12 Wittouck and van Noort BMC Evolutionary Biology (2017) 17:83 Results been shown to be autopalmitoylated but there is no direct evidence for its palmitoylating activity. There is one more human copy of the DHHC family ZDHHC11B but its activity has not been studied. Profiles of (de-)palmitoylating protein families Profiles of (de-)palmitoylating protein families We first searched the literature for proteins for which there is experimental evidence for palmitoylating or depalmitoylating enzymatic activity (Fig. 1a). We found five members in three species of the APT family with depalmitoylating activity (Table 1), four members in four species of the PPT family with depalmitoylating activity and 30 members in two species of the DHHC family with palmitoylating activity. The APT1 of Saccharomyces cerevisiae and Toxoplasma gondii are homologous to human APT1. For one of the palmitoylating enzymes ZDHHC13 the activity is still doubtful; the protein has BLAST searches in proteomes of completely sequenced organisms resulted in 1576 DHHC sequences, 144 APT sequences and 136 PPT sequences. Based on a subset of these homologs, we generated multiple sequence align- ments and manually corrected those. These seed align- ments contained 159 DHHC sequences, 134 APT sequences and 128 PPT sequences. We used the corrected alignments to construct Hidden Markov Models (HMMs) for each of the three families (Fig. 1b–d). The DHHC Fig. 1 Profiles of palmitoylating and depalmitoylating enzymes. a Overview of the strategy for Profile HMM construction. b Domain composition and HMM profile of DHHC protein domain. c Domain composition and HMM Profile of APT protein family. d Domain composition and HMM profile of PPT protein family Fig. 1 Profiles of palmitoylating and depalmitoylating enzymes. a Overview of the strategy for Profile HMM construction. b Domain composition and HMM profile of DHHC protein domain. c Domain composition and HMM Profile of APT protein family. d Domain composition and HMM profile of PPT protein family Fig. 1 Profiles of palmitoylating and depalmitoylating enzymes. a Overview of the strategy for Profile HMM construction. b Domain composition and HMM profile of DHHC protein domain. c Domain composition and HMM Profile of APT protein family. Phylogenetic distribution We used the HMM-profiles to search for protein family members in completely sequenced genomes of 119 eukaryotic and 1008 prokaryotic species. A length-score distribution was used to determine a threshold for inclusion and proteins not containing essential residues were re- moved. We found that metazoan genomes contain a large number of DHHC encoding genes, although there is con- siderable variation between species. Most of them have 10 to 25 DHHC genes, whereas vertebrate genomes contain at least 15 DHHCs. All eukaryotic species contain between 1 and 4 APTs (with one exception of zero) and zero to four PPTS (with one exception of six). Fungal genomes contain the smallest number of DHHCs; only three to seven. Within the green plants (Viridiplantae) there is a clear distinction between two classes; the Chloryphyta have few DHHCs, one APT and one PPT whereas the Embryophyta (land plants) have many DHHCs, four or five APTs and two or three PPTs (Fig. 2). Only the APT family was found outside of eukaryotes with some proteobacteria having one or two copies of this family. From the phylogenetic distribution (Figs. 2 and 3) it is already clear that the number of copies in a genome of each of the enzyme families is correlated, the correlation being 0.58 between DHHC and APT; 0.43 between DHHC and PPT and 0.53 between APT and PPT. How- ever, such correlation could be due to few phylogenetic events; the distributions of DHHC, APT and PPT genes in extant genomes are not phylogenetically independent. Profiles of (de-)palmitoylating protein families d Domain composition and HMM profile of PPT protein family Page 4 of 12 Wittouck and van Noort BMC Evolutionary Biology (2017) 17:83 Page 4 of 12 residues as well as six conserved cysteines can clearly be b d i h fil f h DHHC f il (Fi 1b) h Table 1 Palmitoylation writer and eraser proteins of the APT, PPT and DHHC families of (de-)palmitoylating enzymes whose activity has been experimentally demonstrated Family species gene Reference APT Saccharomyces cerevisiae APT1 [13] Homo sapiens APT1 [11] APTL1 [41] APT2 [42] Toxoplasma gondii APT1 [21] PPT Bos taurus PPT1 [5] Homo sapiens PPT1 [9] Drosophila melanogaster Ppt1 [17] Caenorhabditis elegans ppt-1 [35] DHHC Saccharomyces cerevisiae AKR1 [23] ERF2 [1] SWF1 [43] PFA3 [39] PFA4 [26] PFA5 [19] Homo sapiens ZDHHC1 [41] ZDHHC2 ZDHHC3 ZDHHC4 ZDHHC5 ZDHHC6 ZDHHC7 ZDHHC8 ZDHHC9 ZDHHC11 ZDHHC12 ZDHHC13 ZDHHC14 ZDHHC15 ZDHHC16 ZDHHC17 ZDHHC18 ZDHHC19 ZDHHC20 ZDHHC21 ZDHHC22 ZDHHC23 ZDHHC24 asparagine at 39 and phenylalanine at 43. The APT and PPT profiles are much longer: 207 and 246 match states re- spectively (Fig. 1c–d). The actual domains are even slightly longer, because there are some insertion states that span multiple positions. Apart from the catalytic triads, the two profiles show other common characteristics. For example, the catalytic serine is located in an area of conserved hydro- phobic residues. They also both contain many sites with conserved aromatic residues (green residues in the logos), especially the PPT profile that has more than 10 of these. The length of the DHHC family being short is consist- ent with the multi-domain nature of these proteins (Fig. 1b) as opposed to the single domains of which the APT and PPT family consist. Palmitoyltransferases con- tain next to the DHHC domain, multiple Transmem- brane domains that anchor them to the membrane. Duplications and losses in gene family trees We used phylogenetic reconstructions and tree reconcili- ation to identify phylogenetically independent duplication and loss events and mapped these to a species tree. Bias in inferred duplication and losses can be introduced by small errors in gene trees. To reduce this bias, we performed gene tree rearrangement such that branches that are residues as well as six conserved cysteines can clearly be observed in the profile of the DHHC family (Fig. 1b) that has 43 match states. Other conserved residues are a histi- dine at position 13, an aromatic residue at position 30, Wittouck and van Noort BMC Evolutionary Biology (2017) 17:83 Page 5 of 12 Fig. 2 Evolutionary history of DHHC family proteins. Tree reconciliation of the DHHC rearranged tree. Green bars indicate number of DHHC protein in the extant genome, cyan APT proteins, and magenta PPT proteins. Yellow circles indicate inferred increases in copy numbers of the DHHC family, red circles indicate inferred decreases in copy numbers of the DHHC family. The tree topology is extracted from NCBI taxonomy. Tree continues in Fig. 3 Fig. 2 Evolutionary history of DHHC family proteins. Tree reconciliation of the DHHC rearranged tree. Green bars indicate number of DHHC protein in the extant genome, cyan APT proteins, and magenta PPT proteins. Yellow circles indicate inferred increases in copy numbers of the DHHC family, red circles indicate inferred decreases in copy numbers of the DHHC family. The tree topology is extracted from NCBI taxonomy. Tree continues in Fig. 3 contractions were followed by expansions. One expansion is visible in the lancelet lineage, leading to the species Branchiostoma oridae . A second one is actually a stretch of expansions, starting at the Euteleostomi (Vertebrata) and continuing in two lineages: via the Clupeocephala until the Percomorphaceae ancestor and via the Tetrapoda until the Boreoeutheria ancestor. This stretch of expan- sions was followed by late losses in all lineages. This leads to the conclusion that the copy number of DHHCs peaked in at least three ancestral species. First in the common eukaryotic ancestor, that appears to have had a larger number of DHHCs than the single cell eukaryotes and Ecdysozoa living today. After that in the common ances- tors of the Clupeocephala and Boreoeutheria, that both uncertain are rearranged in order to follow the species tree (see methods). Duplications and losses in gene family trees If there are many duplications in a specific branch, the gene family is expanding whereas many losses in one branch result in contraction of the family. We identify an expansion of DHHC at the last eukaryotic common ancestor. This means part of the diversity in present day DHHC enzymes arose already in this earliest stage of eukaryotic evolution. At the root of the metazoan, the DHHC diversity was shaped by an early expansion followed by contractions. These contractions continued in the non-chordate eukaryotic species and led to their low DHHC numbers. Some of these species have a slightly larger number of DHHCs due to small late expansions. In the Chordata, the early eukaryotic Wittouck and van Noort BMC Evolutionary Biology (2017) 17:83 Page 6 of 12 Hydra magnipapillata Caenorhabditis briggsae Drosophila melanogaster Tribolium castaneum Dasypus novemcinctus Nasonia vitripennis Oryzias latipes Rattus norvegicus Drosophila willistoni Danio rerio Aedes aegypti Gasterosteus aculeatus Drosophila pseudoobscura Taeniopygia guttata Equus caballus Monodelphis domestica Drosophila grimshawi Oryctolagus cuniculus Anopheles gambiae Sus scrofa Anolis carolinensis Bos taurus Caenorhabditis japonica Culex quinquefasciatus Homo sapiens Ciona intestinalis Xenopus Silurana tropicalis Drosophila virilis Nematostella vectensis Ciona savignyi Takifugu rubripes Trichoplax adhaerens Drosophila ananassae Caenorhabditis elegans Mus musculus Felis catus Gallus gallus Strongylocentrotus purpuratus Pediculus humanus corporis Schistosoma japonicum Cavia porcellus Caenorhabditis brenneri Canis lupus familiaris Macaca mulatta Caenorhabditis remanei Ornithorhynchus anatinus Branchiostoma floridae Apis mellifera Ixodes scapularis Tetraodon nigroviridis 3 7 12 1 3 3 6 Fig. 3 Evolutionary history of DHHC family proteins. Tree reconciliation of the DHHC rearranged tree. Green bars indicate number of DHHC protein in the extant genome, cyan APT proteins, and magenta PPT proteins. Yellow circles indicate inferred increases in copy numbers of the DHHC family, red circles indicate inferred decreases in copy numbers of the DHHC family. The tree topology is extracted from NCBI taxonomy. Tree continued from Fig. 2 Fig. 3 Evolutionary history of DHHC family proteins. Tree reconciliation of the DHHC rearranged tree. Green bars indicate number of DHHC protein in the extant genome, cyan APT proteins, and magenta PPT proteins. Yellow circles indicate inferred increases in copy numbers of the DHHC family, red circles indicate inferred decreases in copy numbers of the DHHC family. The tree topology is extracted from NCBI taxonomy. Tree continued from Fig. 2 had larger DHHC counts than any eukaryotic species sequenced today. Duplications and losses in gene family trees In the superphylum of the Alveolata, small contractions in the apicomplexan linages led to a small number of DHHCs. species tree branches with a large number of duplications or losses; the pattern is not visible for species tree branches with less than five DHHC duplications and less than five losses. We assessed statistical significance by considering the net expansions in the DHHC family for each internal branch and dividing them into three groups according to events in APT or PPT family; expansion, contraction or no change. We used the Wilcoxon rank-sum test for independent samples. The association between evolutionary events in the DHHC family with events in the APT family is significant (Fig. 4c, p = 0.0011). The association between DHHC and PPT evolution- ary events (Fig. 4b) is even stronger (Fig. 4d, p = 0.0001). In addition, the association between the APT and PPT events is also significant (Fisher exact test; p = 2e-7). In the APT and PPT families we also observe gains and losses but the copy number per genome is much smaller than the DHHC (Additional files 1 and 2: Figures S1 and S2). In the APT family we observe expansions at the last common eukaryotic ancestor, at the metazoan ancestor and the ances- tor of the euteleostomi. The apicomplexa lost all APT family members, likely linked to their parasitic lifestyle. Correlation between DHHC and APT/PPT evolution The phylogenetic placing of evolutionary events of the DHHC, APT and PPT families are strikingly similar. At spe- cies tree branches with many DHHC duplication events and few losses, the APT family also often expanded (Fig. 4a). Conversely, at branches with few DHHC duplications and a lot of losses, the APT family often reduced (Fig. 4a). The as- sociation between the two families is only apparent for For comparison, reconciliation of the original ML DHHC tree without rearrangement can be found in Additional file 3: Figure S3. As a negative control, we also inferred the evo- lutionary history of the histone deacetylase (HDAC) enzyme family that has 710 members in the genomes we analyzed. We tested its association with the APT and PPT families in Wittouck and van Noort BMC Evolutionary Biology (2017) 17:83 Page 7 of 12 p=0.002** p=0.0003*** p=0.0003*** p=0.005** A B C D Fig. 4 Correlated evolution of DHHC, APT and PPT families. a, b Each dot represents one branch in the species tree. X-axis number of duplications in the DHHC family in that branch, y-axis number of DHHC losses in that branch (a) yellow; branch with gains in APT family, red; branch with losses in APT family, black no change in APT family. b yellow; branch with gains in PPT family, red; branch with losses in PPT family, black no change in PPT family. c Significant differences in net gain in DHHC family per branch between three categories of branches, gain in APT, loss in APT or no change in APT family. d Significant differences in net gain in DHHC family per branch between three categories of branches, gain in PPT, loss in PPT or no change in PPT family A B A B p=0.002** p=0.0003*** p=0.005** C p=0.0003*** D D C Fig. 4 Correlated evolution of DHHC, APT and PPT families. a, b Each dot represents one branch in the species tree. X-axis number of duplications in the DHHC family in that branch, y-axis number of DHHC losses in that branch (a) yellow; branch with gains in APT family, red; branch with losses in APT family, black no change in APT family. b yellow; branch with gains in PPT family, red; branch with losses in PPT family, black no change in PPT family. Correlation between DHHC and APT/PPT evolution c Significant differences in net gain in DHHC family per branch between three categories of branches, gain in APT, loss in APT or no change in APT family. d Significant differences in net gain in DHHC family per branch between three categories of branches, gain in PPT, loss in PPT or no change in PPT family that these families co-evolve. We find that the DHHC family is only present in eukaryotes. The APT family on the other hand is also present in bacteria. More specifically, we find two clusters of proteins matching the APT model: a high scoring cluster with exclusively proteins from the Proteobacteria, and a lower scoring cluster with proteins from Proteobacteria as well as other bacterial clades. The presence of APTs in bacteria strongly suggests that they the same manner as we did for the DHHC family. Although some level of association is observed, there is no significant correlation between HDAC net gain and changes in the APT and PPT families (Additional file 4: Figure S4). Discussion In this work we have analyzed the phylogenetic distribution of palmitoylating and depalmitoylating enzymes and show Wittouck and van Noort BMC Evolutionary Biology (2017) 17:83 Page 8 of 12 arose before the DHHCs in the course of evolution. What could the function of this palmitoylation eraser family be without there being palmitoylation writer enzymes? A possibility is that they have evolved to remove accidental palmitoylation, as this modification has been shown to occur non-enzymatically. This removal of accidental modi- fications is similar to what has been speculated for tyrosine phosphorylation and lysine acetylation erasers [2]. and it is unclear why their diversification in function might be useful in case of increased use of protein palmitoylation, although selection pressure for duplica- tions for dosage increase is conceivable. And secondly, very few PPT enzymes are experimentally confirmed as palmitoylation erasers, and for some of them it has even been shown that they are not capable of this function, such as human PPT2. If the selection scenario is correct, this might be an indication that protein depalmitoylation is in fact the main function of the PPT family, and that these non-depalmitoylating PPTs are rather the exception. In the DHHC family, we find consecutive periods of expansions and contractions. A first hypothesis to explain the expansion-contraction patterns is a temporary selec- tion pressure for a larger number of DHHCs. In general, the adaptive expansion of a gene family can occur for two reasons: a dosage increase of the proteins or a functional diversification of the family [12]. Contractions of gene families are thought to be mainly the result of neutral selection; in other words, the loss alleles are fixated by random drift because they are not deleterious. A pattern of expansion followed by contractions is often seen at whole-genome duplications (WGDs). A possible pitfall of this analysis is that we simply observe the effect of WGDs. In Metazoa, known WGDs occurred in the common ancestor of the Vertebrata and in the common ancestor of the teleost fishes [34]. Also in the history of land plant evolution, one or more WGDs are known to have occurred at the origin of multiple clades or species that are present in our data: the Poaceae, eudicots, Arabi- dopsis thaliana, Populus trichocarpa and Physcomitrella patens [34]. Experimentally validated enzymes The literature resources Scopus and KU Leuven LIMO were searched for research articles describing DHHCs, APTs and PPTs using the search terms protein acylation; protein depamitoylation; protein acyl thioesterase and palmitoyl protein thioesterase . We read the articles and stored protein and species names of characterized en- zymes in a table. In contrast to the APT family, the strong co-evolution of the PPT family with the DHHC and APT families was rather unexpected, for a number of reasons. Firstly, it is fairly certain that PPTs reside in the lysosomes. Therefore, they are unlikely to participate in any signaling processes Discussion Although some overlap is visible with DHHC expansions and WGD events, DHHC expansions also oc- curred when no WGD took place and gene family expan- sions continue in clades after WGD events. y In this light, the question becomes why contractions of the DHHC family after its expansion are not disadvanta- geous. Actually, Hogeweg and co-worker have shown that in an evolving system, lineages with whole genome dupli- cation are better able to adapt to a changing environment [10]. In case of expansion for dosage increase, it could be speculated that gene expansion is the fastest way to achieve this dosage increase. Amplification of an, initially, low-efficiency enzyme can result in adaptive mutations to arise in the enzymatic function or the regulation in any of the gene duplicates. As the occurrence of adaptive muta- tions is limited by the per base mutation rate, a duplica- tion increases the options to adapt. Over time, the expression levels or the enzymatic efficiency of the indi- vidual genes is optimized to the new function, rendering the extra copies superfluous. In case of functional diversi- fication, the explanation for gene loss might be that after new and improved types of DHHCs have evolved from duplicated genes, they partly replace the functions of the conserved types, also rendering them obsolete. Conclusions This study and previous studies suggests that the func- tional link between writer and eraser domains is reflected in correlated evolution on the level of duplications and losses. Conversely, this information could be used to infer functional relationships. So far, prediction of functional interaction based on phylogenetic information has been based on correlated sequence evolution or correlated presence-absence profiles (for a review see [22]) but not on duplications and losses. These methods work well spe- cifically for bacteria and archaea but not as well in eukary- otes [15]. The co-evolution patterns we find here, could be employed to further develop functional interaction pre- diction methods specific to eukaryotes. The co-occurrence of DHHC and APT expansions fits in this selection hypothesis in two possible ways. First, the APT expansions likely comprised only one or two duplications. The evolution of a new palmitoylation eraser enzyme might have created opportunities for more extensive use of palmitoylation in general, leading to selection for more DHHCs. Alternatively, another molecular invention or a change in some environmental factor might have created a selection pressure for the palmitoylation machinary in general, including both writers and erasers. Protein sequences We downloaded all protein sequences from the STRING database (version 9.1) [16]. Locally installed BLAST (version Wittouck and van Noort BMC Evolutionary Biology (2017) 17:83 Page 9 of 12 Page 9 of 12 2.2.30) [4] was used to find homologs of the experimentally validated APT and PPT proteins, with an e-value of 10−50. To find homologs of the DHHC family an e-value cut-off of 10−10 was used. Other search paramaters were default; gap opening penalty 11, gap extension penalty 1, word size 6 and the BLOSUM62 substitution matrix. For the APT and PPT families, the hydrolase domains make up the largest part of the proteins. Thus, whole protein sequences were used as queries. For the DHHC family only the DHHC domain was used as query. Non-redundant BLAST results were collected together for each set of experimentally con- firmed enzymes with the same function. the sequences was alignable, and thus it is appropriate to include global instead of local pairwise alignment informa- tion in the iterative optimization process. We made accur- ate alignments for the APT and PPT families by making use of the multithreading option implemented in MAFFT. First, we aligned the full set of BLAST results with an extended G-INS-i algorithm, using 10,000 optimization cycles. Then we manually inspected the resulting MSA. We made small corrections to the alignment and excluded some sequences based on the knowledge that the catalytic triad is an essential feature of the protein family. Construction of seed alignments For the construction of profile HMMs and the subsequent database searches using these profiles, we used the HMMER software, version 3.1b1 [14]. By default, the hmmbuild com- mand will select all columns of the alignment that contain less than 50% gaps and model these as the match states. To increase the specificity of the search, columns with many gaps or low conservation were excluded. A strict non-gap percentage threshold of 80% and a conservation threshold of 5*10−6 were applied. These selection criteria were imple- mented by the trimAl software, version 1.2rev59 [6]. The boundaries of the family domain were determined by visual inspection of the multiple sequence alignments and columns outside of these boundaries were excluded. Skylign was used to visualize the profile HMMs. The MAFFT package version 7 [20] contains three algo- rithms: the FFT-NS-i, L-INS-i and G-INS-i. All of these are based on a progressive alignment using a guide tree, followed by iterative refinement. FFT-NS-i is the fastest of the three methods. L-INS-i and G-INS-i are slower but more accurate. The BLAST search results of the DHHC family resulted in a large number of protein sequences. Not all of these sequences are needed to capture the common characteristics and the diversity of the family. Taking a subset has the advantage of being able to create a more accurate alignment, more atypical sequences are ex- cluded and it is easier to remove problematic sequences. We implemented a subset function in R and makes use of the R package Phangorn [37]. The function starts with reading the MSA and the construction of a distance matrix, making use of maximum likelihood distance esti- mation and the LG model of amino acid substitution. Then follows an iterative process of two steps. First, the two sequences with the smallest distance between them are identified. And then, of these two, the sequence with the largest total distance to all other sequences is re- moved. These two steps are repeated until the number of sequences is reduced to the required number. For the DHHC family, the BLAST search results were first aligned with the fast MAFFT FFT-NS-I method. Then, a subset of 200 sequences was extracted using the subset method. HMMER searches Th d The constructed profile HMMs were used to search the protein sequence database. The domain list output of hmmsearch was used for further analysis. Inclusion thresholds were set based on i) visual inspection of the length-score plot, ii) sequence characteristics of the re- sults iii) functional annotations. After setting the inclu- sion thresholds domain hits were removed that did not contain essential parts of the domain, the DHHC motif or the catalytic triad. Phylogenetic reconstruction To construct a multiple alignment of the DHHC family, first complete domain hits without large insertions or deletions were aligned with each other with the accurate L- INS-i algorithm of MAFFT. Other sequences were added with the –add option. Prealigned L-INS-i DHXC sequences were added with the –addprofile option. Alignment columns with less than 0.5% residues (99.5% gaps) were removed to save computation time. The APT and PPT sequences were aligned in one step with the MAFFT G- INS-i algorithm with 10,000 optimization cycles. q g The sequences in this subset were then aligned with the accurate L-INS-i algorithm. Next, the alignment was inspected and doubtful sequences were removed. The criteria for inclusion were: the presence of multiple cyst- eine residues in the DHHC domain, the DHHC motif it- self and the 2x2 transmembrane structure of the proteins. For the prediction of the transmembrane struc- tures, we used the TMHMM server, version 2.0 [25]. For the alignments of the APT and PPT families, the G- INS-i algorithm was used. While for the DHHC family, L- INS-i seemed to give better results than G-INS-i, the op- posite was true for the PPT and APT families. The reason for this is that for these families, a much larger portion of The sequences in this subset were then aligned with the accurate L-INS-i algorithm. Next, the alignment was inspected and doubtful sequences were removed. The criteria for inclusion were: the presence of multiple cyst- eine residues in the DHHC domain, the DHHC motif it- self and the 2x2 transmembrane structure of the proteins. For the prediction of the transmembrane struc- tures, we used the TMHMM server, version 2.0 [25]. For the alignments of the APT and PPT families, the G- INS-i algorithm was used. While for the DHHC family, L- INS-i seemed to give better results than G-INS-i, the op- posite was true for the PPT and APT families. The reason for this is that for these families, a much larger portion of For the construction of all phylogenetic trees, we used version 8.1.21 of RAxML [40]. The Pthreads implementa- tion was used for parameter optimization, while we used the hybrid implementation for the actual tree inferences. Tree rearrangement, reconciliation and mapping Tree rearrangement, reconciliation and mapping The first step was the preprocessing of the ML gene tree using R. We rooted the tree with bootstrap values on the root given by the RAxML rooted tree. We gave names to the internal nodes of the tree to make later tracking easier and uniform. Tree rearrangement was carried out with NOTUNG [8]. NOTUNG is a gene tree-species reconcili- ation software package that supports duplication-loss event models with a parsimony-based optimization criter- ion. It thus identifies the smallest (weighted) number of independent evolutionary events that explain the phylo- genetic gene tree. NOTUNG functions include rearran- ging of a rooted gene tree in areas of weak sequence support, thus avoiding overestimating duplications in gene trees that are incongruent with the species-tree. We used the standard parsimony weight parameters of the software: 1.5 for a duplication, 0.0 for a conditional duplication and 1.0 for a loss. For the bootstrap cut-off value to identify weak branches, the value of 90 was used. This is a rela- tively strict value. For the rearrangement procedure, a bin- ary species tree is needed. We obtained binary species trees for each gene family by extracting the NCBI tax- onomy species identifiers of all species present in the gene tree and uploading them to the phyloT online tree gener- ator (biobyte solutions GmbH, 2014) to generate a binary species tree [36]. We used the following options in phyloT: NCBI taxonomy IDs as identifiers, collapsed internal nodes, no polytomies (this option randomly resolves the polytomies of the underlying non-binary species tree from NCBI), newick format. For the construction of phylogenetic trees for fewer than 1000 sequences, the RAxML manual advises the use of the analyses invoked by the -f a option, which combines rapid bootstrapping with an extensive search for the ML tree. We used this strategy for the APT and PPT families. The algorithm starts by computing boot- strap trees with RBS enabled. It then uses these boot- strap trees as starting points to explore the tree space in three steps, increasing the depth of the search but de- creasing the number of trees in each step. First, it does a fast search, using every fifth bootstrap tree as a starting tree. In the second step, the ten most promising results of the fast searches are further improved by doing slower optimizations. Finally, the best of these resulting trees is thoroughly optimized. Phylogenetic reconstruction Wittouck and van Noort BMC Evolutionary Biology (2017) 17:83 Page 10 of 12 Page 10 of 12 Wittouck and van Noort BMC Evolutionary Biology (2017) 17:83 Wittouck and van Noort BMC Evolutionary Biology (2017) 17:83 We determined the optimal protein substitution model using a script provided by A. Stamatakis on the RAxML website. The script determines the substitution model that results in the highest likelihood value of a fixed maximum parsimony (MP) tree. The initial rearrangement parameter determines the depth of the tree search in each iteration of the search algorithm. The RAxML software contains an op- tion to determine this parameter automatically, but the manual advises to test this automatic option versus a fixed setting of 10 for a couple of trees. The option (fixed or automatic) that results in the tree with highest likelihood value should be used for the final tree inferences. We gen- erated five MP starting trees and tested both the automatic and fixed options on each of the trees. A fixed rearrange- ment setting of 10 gave the best results for all families. RAxML tree construction algorithms always produce unrooted trees. We used a rooting algorithm built into RAxML. It uses a variant of midpoint rooting; the tree is rooted in such a way that the sums of the branches of both subtrees of the root are equal. Tree rearrangement, reconciliation and mapping This last step always uses the gamma model of rate heterogeneity, even when the CAT option is specified. The approach above is less attractive for large trees. One reason for this is that it takes a lot of computation time, and another that the required time is impossible to predict. Therefore we used a slightly dif- ferent strategy for the DHHC family. We started by computing bootstrap trees in batches of 100 (with RBS enabled). After each batch, we combined the bootstraps of all batches and tested the MRE criterion. We stopped when the criterion converged. After the tree rearrangements we performed the rec- onciliation, both on the raw ML gene tree and on the rearranged gene tree. For this step we needed non- binary species trees; these were generated using phyloT with the same options as described in the previous para- graph, except that the polytomies were retained. For the inferred duplications, NOTUNG outputs a lower and an upper bound. The lower bound represents the oldest species in which the duplication was present; the upper bound is the youngest species in which the duplication was not present. The losses are written to a table with the species node names and the number of losses. To find the ML tree, we did 20 searches starting from independent parsimony starting trees. To estimate the irregularity of the likelihood surface, we calculated the average Robinson-Foulds distance (RF) as well as the average WRF between all trees. This resulted in a RF of 10.9% and a WRF of 2.8%. These values indicate that while the trees differ quite substantially in general, they are very similar at their highly supported branches. For this reason, we did not perform extra ML tree searches. To obtain the final tree, we picked the ML tree with the highest likelihood between these 20 trees and the trees obtained in the process of tuning the rearrangement set- ting. We then used the -f b option to draw the bootstrap confidence values on this tree. The fact that the gene trees were rearranged using a species tree with randomly resolved polytomies, means that some random rearrangements were introduced in the gene tree. This is however no problem, because in the rec- onciliation process the non-binary species tree was used. References 1. Bartels DJ, Mitchell DA, Dong X, Deschenes RJ. Erf2, a novel gene product that affects the localization and palmitoylation of Ras2 in Saccharomyces cerevisiae. Mol Cell Biol. 1999;19:6775–87. 1. Bartels DJ, Mitchell DA, Dong X, Deschenes RJ. Erf2, a novel gene product that affects the localization and palmitoylation of Ras2 in Saccharomyces cerevisiae. Mol Cell Biol. 1999;19:6775–87. 2. Beltrao P, Bork P, Krogan NJ, van Noort V. Evolution and functional cross-talk of protein post-translational modifications. Mol Syst Biol. 2013;9:714. 3. Calero G, Gupta P, Nonato MC, Tandel S, Biehl ER, Hofmann SL, Clardy J. The crystal structure of palmitoyl protein thioesterase-2 (PPT2) reveals the basis for divergent substrate specificities of the two lysosomal thioesterases, PPT1 and PPT2. J Biol Chem. 2003;278:37957–64. Ethics approval and consent to participate Not applicable. Ethics approval and consent to participate Not applicable. Ethics approval and consent to participate Not applicable. Received: 13 September 2016 Accepted: 9 March 2017 Received: 13 September 2016 Accepted: 9 March 2017 Publisher’s Note Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations. Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations. Additional files 14. Eddy SR. Accelerated Profile HMM Searches. PLoS Comput Biol. 2011;7:e1002195. 14. Eddy SR. Accelerated Profile HMM Searches. PLoS Compu Additional files Additional file 1: Figure S1. Tree reconciliation of the APT ML and rearranged trees. The upper half of the circles represents the results using the ML tree; the lower half represents the results from the rearranged tree. Yellow semicircles indicate inferred gain in the APT family, red semicircles indicate inferred losses in the APT family. Black indicates no inferred copy-number changes. The tree topology is extracted from NCBI taxonomy. (PDF 41 kb) Additional file 1: Figure S1. Tree reconciliation of the APT ML and rearranged trees. The upper half of the circles represents the results using the ML tree; the lower half represents the results from the rearranged tree. Yellow semicircles indicate inferred gain in the APT family, red semicircles indicate inferred losses in the APT family. Black indicates no inferred copy-number changes. The tree topology is extracted from NCBI taxonomy. (PDF 41 kb) 4. Camacho C, Coulouris G, Avagyan V, Ma N, Papadopoulos J, Bealer K, Madden TL. BLAST+: architecture and applications. BMC Bioinformatics. 2009;10:421. 5. Camp LA, Hofmann SL. Purification and properties of a palmitoyl-protein thioesterase that cleaves palmitate from H-Ras. J Biol Chem. 1993;268: 22566–74. 6. Capella-Gutiérrez S, Silla-Martínez JM, Gabaldón T. trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses. Bioinformatics. 2009;25:1972–3. Additional file 2: Figure S2. Tree reconciliation of the PPT ML and rearranged trees. The upper half of the circles represents the results using the ML tree; the lower half represents the results from the rearranged tree. Yellow semicircles indicate inferred gains of the PPT family, red semicircles indicate inferred gene losses of the PPT family. Black indicates no inferred copy-number changes. The tree topology is extracted from NCBI taxonomy. (PDF 38 kb) 7. Chamberlain LH, Shipston MJ. The physiology of protein S-acylation. Physiol Rev. 2015;95:341–76. 8. Chen K, Durand D, Farach-Colton M. NOTUNG: A Program for Dating Gene Duplications and Optimizing Gene Family Trees. J Comput Biol. 2000;7:429–47. 9. Cho S, Dawson PE, Dawson G. In vitro depalmitoylation of neurospecific peptides: implication for infantile neuronal ceroid lipofuscinosis. J Neurosci Res. 2000;59:32–8. 9. Cho S, Dawson PE, Dawson G. In vitro depalmitoylation of neurospecific peptides: implication for infantile neuronal ceroid lipofuscinosis. J Neurosci Res. 2000;59:32–8. Additional file 3: Figure S3. Tree reconciliation of the DHHC ML tree (without rearrangement). Additional files Yellow circles indicate inferred increases in copy numbers of the DHHC family, red circles indicate inferred decreases in copy numbers of the DHHC family. The tree topology is extracted from NCBI taxonomy. (PDF 49 kb) Additional file 3: Figure S3. Tree reconciliation of the DHHC ML tree (without rearrangement). Yellow circles indicate inferred increases in copy numbers of the DHHC family, red circles indicate inferred decreases in copy numbers of the DHHC family. The tree topology is extracted from NCBI taxonomy. (PDF 49 kb) 10. Cuypers TD, Hogeweg P. Virtual Genomes in Flux: An Interplay of Neutrality and Adaptability Explains Genome Expansion and Streamlining. Genome Biol Evol. 2012;4:212–29. 10. Cuypers TD, Hogeweg P. Virtual Genomes in Flux: An Interplay of Neutrality and Adaptability Explains Genome Expansion and Streamlining. Genome Biol Evol. 2012;4:212–29. 11. Dekker FJ, Rocks O, Vartak N, Menninger S, Hedberg C, Balamurugan R, Wetzel S, Renner S, Gerauer M, Schölermann B, et al. Small-molecule inhibition of APT1 affects Ras localization and signaling. Nat Chem Biol. 2010;6:449–56. 11. Dekker FJ, Rocks O, Vartak N, Menninger S, Hedberg C, Balamurugan R, Wetzel S, Renner S, Gerauer M, Schölermann B, et al. Small-molecule inhibition of APT1 affects Ras localization and signaling. Nat Chem Biol. 2010;6:449–56. Additional file 4: Figure S4. Histone deacetylase family as a negative control. A) Differences in net gain in HDAC family per branch between three categories of branches, gain in APT, loss in APT or no change in APT family B) Differences in net gain in HDAC family per branch between three categories of branches, gain in PPT, loss in PPT or no change in PPT family (PDF 41 kb) Additional file 4: Figure S4. Histone deacetylase family as a negative control. A) Differences in net gain in HDAC family per branch between three categories of branches, gain in APT, loss in APT or no change in APT family B) Differences in net gain in HDAC family per branch between three categories of branches, gain in PPT, loss in PPT or no change in PPT family (PDF 41 kb) 12. Demuth JP, Hahn MW. The life and death of gene families. Bioessays. 2009; 31:29–39. 12. Demuth JP, Hahn MW. The life and death of gene families. Bioessays. 2009; 31:29–39. 13. Duncan JA, Gilman AG. Characterization of Saccharomyces cerevisiae acyl- protein thioesterase 1, the enzyme responsible for G protein alpha subunit deacylation in vivo. J Biol Chem. 2002;277:31740–52. Funding 15. Franceschini A, Lin J, von Mering C, Jensen LJ. SVD-phy: improved prediction of protein functional associations through singular value decomposition of phylogenetic profiles. Bioinformatics. 2016;32(7):1085-7. Funding This work was supported by the KU Leuven research fund. 16. Franceschini A, Szklarczyk D, Frankild S, Kuhn M, Simonovic M, Roth A, Lin J, Minguez P, Bork P, von Mering C, et al. STRING v9.1: protein-protein interaction networks, with increased coverage and integration. Nucleic Acids Res. 2013;41:D808–15. 16. Franceschini A, Szklarczyk D, Frankild S, Kuhn M, Simonovic M, Roth A, Lin J, Minguez P, Bork P, von Mering C, et al. STRING v9.1: protein-protein interaction networks, with increased coverage and integration. Nucleic Acids Res. 2013;41:D808–15. Consent for publication N li bl Consent for publication Not applicable. Consent for publication Not applicable. Authors’ contributions Authors contributions VvN has provided the idea for the study. SW has carried out analyses. SW and VvN wrote the manuscript. Both authors read and approved the final manuscript. The inferred duplication and loss events were mapped on a species tree and visualized with the online tool iTol [27]. The conversion of the event data to the suitable format for iTol was done in R. We used the DHHC spe- cies tree for data visualization since it contained all eukaryotic species in the database that we used. In both the event data and the species tree, the NCBI taxonomy identifiers of the species were converted to the species names. To handle phylogenetic trees in R, we made use of the APE package [33]. Competing interests The authors declare that they have no competing interests. Competing interests The authors declare that they have no competing interests. Competing interests The authors declare that they have no competing interests. Evolutionary history of the HDAC family 1Centre of Microbial and Plant Genetics, KU Leuven, Leuven, Belgium. 2 f f 1Centre of Microbial and Plant Genetics, KU Leuven, Leuven, Belgium. 2 2Department of Bioscience Engineering, University of Antwerp, Antwerp, Belgium. 2Department of Bioscience Engineering, University of Antwerp, Antwerp, Belgium. An HMM of the histone deacetylase domain was re- trieved from Pfam (PF00850). The HMMER search, con- struction of phylogenetic tree, rearrangement and reconciliation steps were performed in the same way as for the APT and PPT families. In total 710 HDAC se- quences were included in the phylogenetic tree. We set a fixed value of 200 bootstraps in the tree inference process. Received: 13 September 2016 Accepted: 9 March 2017 Tree rearrangement, reconciliation and mapping The random rearrangements then corresponded again to Wittouck and van Noort BMC Evolutionary Biology (2017) 17:83 Page 11 of 12 polytomies in the species tree, meaning that they can only have led to conditional duplication inferences. These were not retained in the results. Availability of data and materials Availability of data and materials The datasets during and/or analysed during the current study available from the corresponding author on reasonable request. Page 12 of 12 Wittouck and van Noort BMC Evolutionary Biology (2017) 17:83 17. Glaser RL, Hickey AJ, Chotkowski HL, Chu-LaGraff Q. Characterization of Drosophila palmitoyl-protein thioesterase 1. Gene. 2003;312:271–9. 18. Greaves J, Chamberlain LH. DHHC palmitoyl transferases: substrate interactions and (patho)physiology. Trends Biochem Sci. 2011;36:245–53. interactions and (patho)physiology. Trends Biochem Sci. 2011;36:245– 19. Hou H, John Peter AT, Meiringer C, Subramanian K, Ungermann C. Analysis of DHHC acyltransferases implies overlapping substrate specificity and a two-step reaction mechanism. Traffic. 2009;10:1061–73. 20. Katoh K, Standley DM. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol. 2013;30:772–80. 21. Kemp LE, Rusch M, Adibekian A, Bullen HE, Graindorge A, Freymond C, Rottmann M, Braun-Breton C, Baumeister S, Porfetye AT, et al. Characterization of a serine hydrolase targeted by acyl-protein thioesterase inhibitors in Toxoplasma gondii. J Biol Chem. 2013;288:27002–18. 22. Kensche PR, van Noort V, Dutilh BE, Huynen MA. Practical and theoretical advances in predicting the function of a protein by its phylogenetic distribution. J R Soc Interface. 2008;5:151–70. 23. Kihara A, Kurotsu F, Sano T, Iwaki S, Igarashi Y. Long-chain base kinase Lcb4 Is anchored to the membrane through its palmitoylation by Akr1. Mol Cell Biol. 2005;25:9189–97. 24. Kollmann K, Uusi-Rauva K, Scifo E, Tyynelä J, Jalanko A, Braulke T. Cell biology and function of neuronal ceroid lipofuscinosis-related proteins. Biochim Biophys Acta. 2013;1832:1866–81. 25. Krogh A, Larsson B, von Heijne G, Sonnhammer EL. Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. J Mol Biol. 2001;305:567–80. g 26. Lam KKY, Davey M, Sun B, Roth AF, Davis NG, Conibear E. Palmitoylation by the DHHC protein Pfa4 regulates the ER exit of Chs3. J Cell Biol. 2006;174:19–25. 26. Lam KKY, Davey M, Sun B, Roth AF, Davis NG, Conibear E. Palmitoylation by the DHHC protein Pfa4 regulates the ER exit of Chs3. J Cell Biol. 2006;174:19–25. 27. Letunic I, Bork P. Interactive Tree Of Life v2: online annotation and display of phylogenetic trees made easy. Nucleic Acids Res. 2011;39:W475–8. 28. Lim WA, Pawson T. Phosphotyrosine Signaling: Evolving a New Cellular Communication System. Cell. 2010;142:661–7. 28. Lim WA, Pawson T. Phosphotyrosine Signaling: Evolving a 28. Lim WA, Pawson T. Phosphotyrosine Signalin Communication System. Cell. 2010;142:661–7 Communication System. Cell. 2010;142:661–7. 29. Wittouck and van Noort BMC Evolutionary Biology (2017) 17:83 Availability of data and materials Mitchell DA, Vasudevan A, Linder ME, Deschenes RJ. Protein palmitoylation by a family of DHHC protein S-acyltransferases. J Lipid Res. 2006;47:1118–27. 30. Moorhead GBG, De Wever V, Templeton G, Kerk D. Evolution of protein phosphatases in plants and animals. Biochem J. 2009;417:401–9. 31. Nadolski MJ, Linder ME. Protein lipidation. FEBS J. 2007;274:5 32. Nardini M, Dijkstra BW. Alpha/beta hydrolase fold enzymes: the family keeps growing. Curr Opin Struct Biol. 1999;9:732–7. 32. Nardini M, Dijkstra BW. Alpha/beta hydrolase growing. Curr Opin Struct Biol. 1999;9:732–7. 33. Paradis E, Claude J, Strimmer K. APE: Analyses of Phylogene Evolution in R language. Bioinformatics. 2004;20:289–90. 33. Paradis E, Claude J, Strimmer K. APE: Analyses of Phylogenet Evolution in R language. Bioinformatics. 2004;20:289–90. 34. Van de Peer Y, Maere S, Meyer A. The evolutionary significance of ancient genome duplications. Nat Rev Genet. 2009;10:725–32. 35. Porter MY, Turmaine M, Mole SE. Identification and characterization of Caenorhabditis elegans palmitoyl protein thioesterase1. J Neurosci Res. 2005;79:836–48. 36. Sayers EW, Barrett T, Benson DA, Bryant SH, Canese K, Chetvernin V, Church DM, DiCuccio M, Edgar R, Federhen S, et al. Database resources of the National Center for Biotechnology Information. Nucleic Acids Res. 2009;37:D5–D15. y 37. Schliep KP. phangorn: phylogenetic analysis in R. Bioinformatics. 2011;27:592–3. 38. Simon GM, Cravatt BF. Activity-based proteomics of enzyme superfamilies: serine hydrolases as a case study. J Biol Chem. 2010;285:11051–5. serine hydrolases as a case study. J Biol Chem. 2010;285:11051–5. 39. Smotrys JE, Schoenfish MJ, Stutz MA, Linder ME. The vacuolar DHHC-CRD protein Pfa3p is a protein acyltransferase for Vac8p. J Cell Biol. 2005;170:1091–9 40. Stamatakis A. RAxML version 8: a tool for phylogenetic analysis and post- analysis of large phylogenies. Bioinformatics. 2014;30:1312–3. 39. Smotrys JE, Schoenfish MJ, Stutz MA, Linder ME. The vacuolar DHHC-CRD protein Pfa3p is a protein acyltransferase for Vac8p. J Cell Biol. 2005;170:1091–9. protein Pfa3p is a protein acyltransferase for Vac8p. J Cell Biol. 2005;170:1091–9 40. Stamatakis A. RAxML version 8: a tool for phylogenetic analysis and post- analysis of large phylogenies. Bioinformatics. 2014;30:1312–3. 40. Stamatakis A. RAxML version 8: a tool for phylogenetic analysis and post- analysis of large phylogenies. Bioinformatics. 2014;30:1312–3. 41. Tian L, McClafferty H, Knaus H-G, Ruth P, Shipston MJ. Distinct acyl protein transferases and thioesterases control surface expression of calcium- activated potassium channels. J Biol Chem. 2012;287:14718–25. Submit your next manuscript to BioMed Central and we will help you at every step: Submit your next manuscript to BioMed Central and we will help you at every step: Submit your next manuscript to BioMed Central and we will help you at every step: 42. Tomatis VM, Trenchi A, Gomez GA, Daniotti JL. Acyl-protein thioesterase 2 catalyzes the deacylation of peripheral membrane-associated GAP-43. PLoS One. 2010;5:e15045. • We accept pre-submission inquiries • Our selector tool helps you to find the most relevant journal • We provide round the clock customer support • Convenient online submission • Thorough peer review • Inclusion in PubMed and all major indexing services • Maximum visibility for your research Submit your manuscript at www.biomedcentral.com/submit and we will help you at every step: 43. Valdez-Taubas J, Pelham H. Swf1-dependent palmitoylation of the SNARE Tlg1 prevents its ubiquitination and degradation. EMBO J. 2005;24:2524–32. 44. Weinert BT, Iesmantavicius V, Wagner SA, Schölz C, Gummesson B, Beli P, Nyström T, Choudhary C. Acetyl-phosphate is a critical determinant of lysine acetylation in E. coli. Mol Cell. 2013;51:265–72. 45. Zeidman R, Jackson CS, Magee AI. Protein acyl thioesterases (Review). Mol Membr Biol. 2009;26:32–41. 45. Zeidman R, Jackson CS, Magee AI. Protein acyl thioesterases (Review). Mol Membr Biol. 2009;26:32–41.
https://openalex.org/W4283323088
https://e-journal.undikma.ac.id/index.php/prismasains/article/download/4942/3310
English
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Development of Web Bases Inquiry Learning with the Flipped Classroom Model in Science Learning for 7th Grade of Junior High School
Prisma Sains : Jurnal Pengkajian Ilmu dan Pembelajaran Matematika dan IPA IKIP Mataram/Prisma sains
2,022
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18 21 27 1 37 37 1 1 1 1 2 4 5 14 14 2 1 1 1 1 4 5 14 14 22 2 2 3 13 23 36 23 23 7 5 7 12 16 17 17 2 2 36 2 3 13 7 15 25 2 12 20 2 9 19 20 20 31 35 9 11 11 11 24 2 6 6 8 26 28 29 30 2 28 6 8 6 6 30 26 29 26 29 26 29 34 33 33 18 4 18 10 12 10 12 7 7 10 32 7 7 10 7 10 7 10 23 32 1 3 1 2 2 5 10 14 22 1 5 14 2 10 22 2 10 21% SIMILARITY INDEX 18% INTERNET SOURCES 11% PUBLICATIONS 7% STUDENT PAPERS 1 3% 2 2% 3 1% 4 1% 5 1% 6 1% Development of Web Bases Inquiry Learning with the Flipped Classroom Model in Science Learning for Grade 7 Junior High School ORIGINALITY REPORT PRIMARY SOURCES archive.conscientiabeam.com Internet Source eprints.unm.ac.id Internet Source www.iosrjournals.org Internet Source jurnal.fkip.unila.ac.id Internet Source I M Astra, S I Khumaeroh. "The effect of flipped classroom model on student’s physics learning outcome in work and energy concept", Journal of Physics: Conference Series, 2019 Publication Submitted to Universitas Negeri Surabaya The State University of Surabaya Student Paper www.atlantis-press.com Internet Source 9 10 1% D M O Suni, Dafik, I M Tirta, Y Wangguway, M H Mukaromah. "The analysis of output based learning implementation in improving students creative and innovative thinking skills in solving H-Irregularity", Journal of Physics: Conference Series, 2020 Publication 10 % E Widyastuti, Susiana. "Using the ADDIE model to develop learning material for actuarial mathematics", Journal of Physics: Conference Series, 2019 Publication 11 % 12 mjltm.org Internet Source 12 mjltm.org Internet Source 12 % 13 % www.iosrjournals.org Internet Source 4 jurnal.fkip.unila.ac.id Internet Source 4 5 6 % 7 1% K Insani, Suratno, I Farisi. "ICT literacy with google suite for education (GSFE) in junior high school with different academic abilities", Journal of Physics: Conference Series, 2020 Publication 7 7 % ejournal.upbatam.ac.id Internet Source ejournal.upbatam.ac.id 1% 8 1% ethicallingua.org Internet Source 1 % 15 1% 16 <1% 17 <1% 18 <1% 19 <1% 20 <1% 21 <1% jurnalpendidikan.unisla.ac.id Internet Source jurnal.ikipmumaumere.ac.id Internet Source e-campus.iainbukittinggi.ac.id Internet Source journal.stkipsingkawang.ac.id Internet Source www.eajournals.org Internet Source I Solihin, Sumardi, N Umamah. "Interactive Weblog as a Source of Social Study of Junior High School Students", IOP Conference Series: Earth and Environmental Science, 2019 Publication Leila Kianfard, Farkhonde Amin SHokravi, Sakineh Rakhshanderou, Shamsaddin Niknami. "Perceptual Factors (Awareness, Attitude) and Positive, Indeterminate and Negative Nurturing Factors Affecting Physical Activity of Pregnant Women Visiting Health- care Centers in Tehran: Examination and l h e-campus.iainbukittinggi.ac.id Internet Source % jurnalpendidikan.unisla.ac.id jurnalpendidikan.unisla.ac.id 15 % % Internet Source jurnal.ikipmumaumere.ac.id Internet Source 16 journal.stkipsingkawang.ac.id Internet Source www.eajournals.org Internet Source 19 20 <1 I Solihin, Sumardi, N Umamah. "Interactive Weblog as a Source of Social Study of Junior High School Students", IOP Conference Series: Earth and Environmental Science, 2019 Publication 20 % <1% Leila Kianfard, Farkhonde Amin SHokravi, Sakineh Rakhshanderou, Shamsaddin Niknami. "Perceptual Factors (Awareness, Attitude) and Positive, Indeterminate and Negative Nurturing Factors Affecting Physical Activity of Pregnant Women Visiting Health- care Centers in Tehran: Examination and Analyses", Research Square, 2021 Publication 21 % <1% R Fauziah. "Mathematical problem-solving ability using flipping classroom with relating, experiencing, applying, cooperating, and transferring learning strategy", Journal of Physics: Conference Series, 2020 Publication 22 % repository.uin-malang.ac.id Internet Source 23 23 % p y Internet Source Submitted to Universitas Negeri Malang d % 27 28 Submitted to Universitas Jambi Student Paper eprints.uny.ac.id 34 p Internet Source Submitted to Universitas Jambi Student Paper % % <1% 0 <1% I G P Sindu, G S Santyadiputra, A A J Permana. "Designing learning object using articulate storyline 3 for supporting indonesia online learning system (spada)", Journal of Physics: Conference Series, 2021 P bli i <1% 30 % Publication adoc.pub Internet Source adoc.pub 1% 31 31 % p Internet Source ejournal.undiksha.ac.id 32 jurnalmahasiswa.unesa.ac.id 35 36 <1% Raifa Novriani, Asni Johari, Bambang Hariyadi. "Pengembangan Modul IPA Berbasis Metode Studi Kasus untuk Siswa Sekolah Menengah Pertama", Edu-Sains: Jurnal Pendidikan Matematika dan Ilmu Pengetahuan Alam, 2017 36 % Tri Andri Hutapea, Pardomuan Nauli Josip Mario Sinambela, Dilinar Adlin. "Ability of Problem Solving Students Based on % Information and Communication Technology", Journal of Physics: Conference Series, 2020 Publication Exclude quotes Off Exclude bibliography On Exclude quotes Off Exclude bibliography On Exclude matches Off Exclude matches Off
https://openalex.org/W4220655756
https://infoscience.epfl.ch/record/293033/files/s41598-022-07445-4.pdf
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Statistical distortion of supervised learning predictions in optical microscopy induced by image compression
Scientific reports
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compression Enrico Pomarico1*, Cédric Schmidt1, Florian Chays1, David Nguyen2, Arielle Planchette2, Audrey Tissot3, Adrien Roux1, Stéphane Pagès3,4, Laura Batti3, Christoph Clausen5, Theo Lasser6, Aleksandra Radenovic2, Bruno Sanguinetti5 & Jérôme Extermann1 The growth of data throughput in optical microscopy has triggered the extensive use of supervised learning (SL) models on compressed datasets for automated analysis. Investigating the effects of image compression on SL predictions is therefore pivotal to assess their reliability, especially for clinical use. We quantify the statistical distortions induced by compression through the comparison of predictions on compressed data to the raw predictive uncertainty, numerically estimated from the raw noise statistics measured via sensor calibration. Predictions on cell segmentation parameters are altered by up to 15% and more than 10 standard deviations after 16-to-8 bits pixel depth reduction and 10:1 JPEG compression. JPEG formats with higher compression ratios show significantly larger distortions. Interestingly, a recent metrologically accurate algorithm, offering up to 10:1 compression ratio, provides a prediction spread equivalent to that stemming from raw noise. The method described here allows to set a lower bound to the predictive uncertainty of a SL task and can be generalized to determine the statistical distortions originated from a variety of processing pipelines in AI-assisted fields. In the last years, an ever-growing community of optical microscopists is facing a massive data throughput, long- term storage costs, data transfer limitations and, more importantly, the need for automated quantitative data analysis, which has paved the way for extensive use of artificial intelligence (AI) methods. Supervised learning (SL) algorithms are routinely adopted to automate classification, segmentation, and artificial labelling of cellular or sub-cellular ­structures1–3, biological ­tissues4–6, as well as material ­defects7–9. SL approaches have reported remarkable results in various fields, such as medical ­screening10,11, single molecule ­localization12,13 and drug ­discovery14,15. Deep-learning (DL) algorithms have also been successfully employed for micrograph restoration, in particular for de-noising and spatial resolution ­enhancement16–18. p g p However, to deal with large training datasets and computational power constraints, SL models are ubiqui- tously executed on compressed imaging datasets. Despite producing visually faithful images, lossy compres- sion algorithms are known to remove an unpredictable amount of information from the raw image. Moreover, compressed data often undergo additional processing before being used to train or test a SL model. www.nature.com/scientificreports www.nature.com/scientificreports www.nature.com/scientificreports Scientific Reports | (2022) 12:3464 Results R d t Raw data statistical noise. Raw data, typically obtained through a digitization operation on a physi- cal sample via an acquisition instrument, are intrinsically affected by the noise associated with the acquisition process. When an optical sensor is used, raw data variability is mainly provided by the quantum noise of the photons hitting the sensor, as well as by the electronic ­noise21. Hence, if one performs a sample acquisition under stabilized illumination conditions, as shown in Fig. 1a, the acquired raw images are not identical and the raw pixel values display a statistical distribution of average μ and width σ (the standard deviation associated to the per-pixel noise). Raw statistics could be in principle determined by repeating and averaging the acquisition of the same image several times. However, these tests are often hard to be carried out in a microscopy laboratory, because of sample variability, non-stationary illumination conditions, mechanical instabilities, as well as computational limitations. Sensor calibration and measurement of statistical distortions of SL predictions. The first step of our method consists in calibrating the microscope’s imaging sensor to determine an accurate mapping between light intensities and per-pixel noise. This is performed by sending to the sensor variable intensities from a homogeneous and controlled light source (see Supplementary Material). g g y Secondly, using the sensor-dependent calibration data (Fig. 1b), statistically raw-equivalent images are numer- ically generated from a single raw image by replacing the original pixel value with a random one satisfying the raw pixel value statistical distribution (Fig. 1c).hi Thirdly, a classification SL model is trained on raw data and provides predictions on a certain parameter χ . By testing the model on the synthetic images (Fig. 1e), the prediction spread σraw associated to χ can be determined similarly to a Monte-Carlo simulation.i y As a final step, we evaluate whether image compression (Fig. 1d) leads to predictions exceeding the original predictive uncertainty σraw . To this end, the difference between the values of a parameter χ without ( χraw) and with compression ( χc ) is compared to σraw by using, as a figure of merit, the standard score defined as: ǫ = χraw −χc σraw A standard score ǫ such that |ǫ| < 1 indicates that the statistical variability of SL predictions is smaller than that stemming from the natural noise of raw micrographs, defining therefore a general criterion for tolerability of statistical distortions induced by compression. www.nature.com/scientificreports/ investigating the representational uncertainty of the AI pipeline, consisting in errors due to the data representa- tion adopted for training or testing the SL model. investigating the representational uncertainty of the AI pipeline, consisting in errors due to the data representa- tion adopted for training or testing the SL model. Here, we propose a method for quantifying the statistical distortions induced by compression on SL pre- dictions. We first determine the predictive uncertainty of a trained SL model from the statistical noise of raw imaging data. Raw noise is measured via sensor calibration. As raw noise is unavoidable, our approach allows one to estimate the minimal level of representational uncertainty in SL predictions. Then, we compare outcomes obtained on compressed datasets to the raw predictive uncertainty by using a specific figure of merit, that will indicate the level of alteration of the SL outcomes statistics. We implement this method to investigate the impact of image compression on the outcomes of cell segmen- tation tasks. To this end, we will consider three types of operations aimed at reducing data volume: pixel depth reduction, JPEG compression, as well as a metrologically accurate compression technique developed by the Dotphoton (DP) company (www.​dotph​oton.​com). The DP method reports compression ratios from 5:1 to 10:1 after an initial image preparation step, in which image noise is replaced with a pseudo-random noise that closely mimics the statistical distribution of the raw pixel values. Although the noise replacement reduces the signal- to-noise ratio of each pixel by 1.2 dB, it allows to achieve high compression factors, as the pseudo-noise can be computed and makes the subsequent application of a standard lossless compression algorithm more ­efficient20. compression Therefore, image compression can modify SL predictions with respect to when raw datasets are used and lead to unreliable scientific outcomes, based on how much the statistical distribution of the final predictions is altered. For this reason, the statistical distortions induced by compression need to be quantified to investigate the tolerability of image compression methods for SL applications. g p pp To this end, it is crucial to measure the statistical distribution of the SL outcomes in the absence of compres- sion, in other terms the prediction uncertainty associated to raw data. According to Begoli et al.19, the lifecycle of an AI process from the physical sample to the AI-assisted decisions is affected by multiple sources of uncertainty. Understanding how image compression affects the statistical distribution of SL outcomes can be ascribed to 1HEPIA, HES-SO, University of Applied Sciences and Arts Western Switzerland, Rue de la Prairie 4, 1202 Geneva, Switzerland. 2Laboratory of Nanoscale Biology, School of Engineering, École Polytechnique Fédérale de Lausanne, 1015  Lausanne, Switzerland. 3Wyss Center for Bio- and Neuroengineering, Geneva, Switzerland. 4Department of Basic Neurosciences, Geneva Neuroscience Center, Faculty of Medicine, University of Geneva, Geneva, Switzerland. 5Dotphoton SA, Zeughausgasse 17, 6300  Zug, Switzerland. 6Max-Planck Institute for Polymer Research, Ackermannweg 10, 55128 Mainz, Germany. *email: enrico.pomarico@hesge.ch | https://doi.org/10.1038/s41598-022-07445-4 Scientific Reports | (2022) 12:3464 www.nature.com/scientificreports/ Results R d t This distribution can be reconstructed by plotting the single pixel relative error (RE) from 1000 acquired images at the same light intensity (left inset: RE as a function of the number of images or samples; right inset: histogram of the RE values). (b,c) Via calibration data of the acquisition sensor, statistically raw-equivalent unprocessed images (with same σ and μ) are generated. (d) Image compression is performed on raw data: the differences between the 8-bit, 10:1 JPEG, 7:1 DP compressed formats and the raw image (∆), normalized to the per-pixel noise σ(∆/σ), indicate the artifacts induced by compression on the original image. The displayed image portions correspond to the dotted rectangle in (a). (e) A SL model, trained on raw data, is used to classify single pixels into two classes A and B. In this work, a Random Forest algorithm classifies pixels according to cell (A) and background (B) classes and produces cell segmentation masks. The model is tested on the statistically raw- equivalent synthetic data to determine the standard deviation σraw associated to a certain parameter χraw . The model also predicts a value of the considered parameter from the compressed data χc . To verify the statistical impact of image compression, the value of χc is compared to χraw via the standard score ǫ = χraw−χc σraw  . If |ǫ| > 1, SL predictions on the compressed image exceed the statistical variability stemming from raw data noise. The figure has been generated via Python 3.7.3, the Trainable Weka Segmentation plugin (v3.3.1) in ImageJ 2.3.0/1.53f., and Microsoft PowerPoint 16.53. Figure 1. Quantification of the statistical distortions induced by image compression on SL predictions. (a) Raw imaging data from a microscope are intrinsically affected by noise: pixel values in a raw micrograph (in the figure a PC image of human neural stem cells (scale bar: 100 μm)) have a statistical distribution of width σ and mean μ. This distribution can be reconstructed by plotting the single pixel relative error (RE) from 1000 acquired images at the same light intensity (left inset: RE as a function of the number of images or samples; right inset: histogram of the RE values). (b,c) Via calibration data of the acquisition sensor, statistically raw-equivalent unprocessed images (with same σ and μ) are generated. Results R d t 2D cell segmentation. To demonstrate our method, we perform SL-based cellular segmentation tasks on 2-dimensional (2D) image datasets, obtained through phase-contrast (PC) microscopy, as well as 3-dimensional (3D) datasets obtained via light-sheet (LS) microscopy and optical projection tomography (OPT). By increasing the dimensionality of the raw dataset, we aim at observing how the complexification of raw data noise impacts the SL predictive uncertainty.i p y We first consider a cell segmentation task on PC images of microspheres, as well as mouse kidney collect- ing duct (MPK) cells. A random forest (RF) ­algorithm22, taking decisions on the basis of morphological spatial features, is trained via manual pixel annotations performed on the raw images (details in the Methods section). After producing a segmentation map, we estimate parameters related to the whole image, as well as specific to single segmented objects. After calibration of the acquisition camera, we numerically generate a set of 10 sta- tistically raw-equivalent images and determine the predictive uncertainty σraw of the considered parameters as the standard deviation of the values obtained with this dataset. The segmented mask obtained from an image of microspheres is shown in Fig. 2a. In Fig. 2d, we compare the total number of objects ­Ntot and the total segmented area ­Atot predicted from the raw image with those obtained from the corresponding 7:1 DP, 8-bit, 10:1 and 100:1 JPEG file. The difference in ­Ntot with respect to the raw value is in all cases less than 1% ( ǫ ≈1 ). In contrast, the predicted value of ­Atot in the 8-bit and JPEG cases ( ǫ > 50 ) shows a 2% deviation with respect to the raw result, while only 0.1% variation in the DP case ( ǫ = −2).f y We then perform a similar analysis on 19 different morphological parameters estimated for each segmen object (area, coordinates of the center of mass ­(XCM, ­YCM), perimeter, major axis, minor axis, ellipsoid an https://doi.org/10.1038/s41598-022-07445-4 Scientific Reports | (2022) 12:3464 | www.nature.com/scientificreports/ www.nature.com/scientificreports/ Figure 1. Quantification of the statistical distortions induced by image compression on SL predictions. (a) Raw imaging data from a microscope are intrinsically affected by noise: pixel values in a raw micrograph (in the figure a PC image of human neural stem cells (scale bar: 100 μm)) have a statistical distribution of width σ and mean μ. Results R d t (d) Image compression is performed on raw data: the differences between the 8-bit, 10:1 JPEG, 7:1 DP compressed formats and the raw image (∆), normalized to the per-pixel noise σ(∆/σ), indicate the artifacts induced by compression on the original image. The displayed image portions correspond to the dotted rectangle in (a). (e) A SL model, trained on raw data, is used to classify single pixels into two classes A and B. In this work, a Random Forest algorithm classifies pixels according to cell (A) and background (B) classes and produces cell segmentation masks. The model is tested on the statistically raw- equivalent synthetic data to determine the standard deviation σraw associated to a certain parameter χraw . The model also predicts a value of the considered parameter from the compressed data χc . To verify the statistical impact of image compression, the value of χc is compared to χraw via the standard score ǫ = χraw−χc σraw  . If |ǫ| > 1, SL predictions on the compressed image exceed the statistical variability stemming from raw data noise. The figure has been generated via Python 3.7.3, the Trainable Weka Segmentation plugin (v3.3.1) in ImageJ 2.3.0/1.53f., and Microsoft PowerPoint 16.53. circularity, Feret, Feret X, Feret Y, Feret angle, Minimum Feret, aspect ratio, roundness, solidity, Feret aspect ratio, compactness, and extent)23. For a single object in the raw image, we identify the same object in all syn- thetic and compressed images by searching for that with the same center coordinates. When this is not possible (around 10% of the cases), we identify the object located at the minimum Euclidean distance with respect to the one considered in the raw image. We reject for the analysis the pairs of objects whose centers are further than 3 pixels (few per cent of the total number of objects).h circularity, Feret, Feret X, Feret Y, Feret angle, Minimum Feret, aspect ratio, roundness, solidity, Feret aspect ratio, compactness, and extent)23. For a single object in the raw image, we identify the same object in all syn- thetic and compressed images by searching for that with the same center coordinates. When this is not possible (around 10% of the cases), we identify the object located at the minimum Euclidean distance with respect to the one considered in the raw image. Results R d t We reject for the analysis the pairs of objects whose centers are further than 3 pixels (few per cent of the total number of objects).h p p j The inset of Fig. 2b shows a linear trend between the single-object area estimated from the raw ­(Araw) and the DP ­(ADP) mask. The groups of points accumulating along the diagonal correspond to aggregates of microspheres. The mean and the standard deviation of the distribution of the difference in the single-object area (∆A), obtained from the synthetic raw-equivalent images with respect to the raw ones, are in good agreement with the those obtained for the DP format. However, a clear shift of around 3 pixels and a larger spread of the distribution of ∆A is observed in the 8-bit and JPEG cases (Fig. 2c and Table 1). g In Fig. 2e, we plot the standard scores ǫ for all parameters averaged over all objects. All scores for the DP format are close to zero and have standard deviations (indicated by error bars) of the order of 1, showing that alterations induced by the DP compression can be considered statistically equivalent to those produced by the intrinsic noise of the raw images. In contrast, the distribution of the standard scores is larger than the [− 1, 1] interval, in some cases of up to 10 standard deviations, with mean values far from 0 for almost all parameters in the 8-bit and JPEG cases. These results imply that predictions on the 8-bit and JPEG files exceed the predictive uncertainty provided by the raw statistical noise. Statistical distortions of predictions on JPEG files are similar to the 8-bit case when the 10:1 factor is used and deviate dramatically (more than 10 standard deviations for almost all parameters) from the raw ones as the compression ratio increases. Scientific Reports | (2022) 12:3464 | https://doi.org/10.1038/s41598-022-07445-4 www.nature.com/scientificreports/ Figure 2. Statistical distortions induced by compression in 2D segmentation tasks in PC microscopy. (a) Micrograph of microspheres (scale bar: 20 μm) with corresponding segmentation mask. (b) Area of each segmented object obtained from the raw ­(Araw) and the corresponding 6.7:1 DP compressed image ­(ADP) for all objects. c Histogram of the difference in the single object area (∆A) determined from the raw and the statistically raw-equivalent images ­(Araw–Asynt raw), the DP ­(Araw–ADP), the 8-bit ­(Araw–A8bit), the 10:1 JPEG ­(Araw–A10:1 JPEG) and the 100:1 JPEG file ­(Araw–A100:1 JPEG). Results R d t (d) Values of the parameters associated to the whole segmented image, such as number of objects and total segmented area, obtained from the DP, the 8-bit and the JPEG segmented images and normalized to the raw value. The error bars on the raw values are calculated from the standard deviation of the values obtained from the synthetic raw images. (e) Average of the standard score ǫ of 19 parameters associated to the single segmented objects. Red dotted lines correspond to ε =  ± 1. (f) PC Micrograph of MPK cells (scale bar: 50 μm) with segmentation mask, down-sampled to 8-bits and compressed into 6.1:1 DP, 10:1 and 100:1 JPEG formats. (g,h) Same as (d,e) for the MPK cells. The figure has been generated via Python 3.7.3, the Trainable Weka Segmentation plugin (v3.3.1) in ImageJ 2.3.0/1.53f, and Microsoft PowerPoint 16.53. Figure 2. Statistical distortions induced by compression in 2D segmentation tasks in PC microscopy. (a) Micrograph of microspheres (scale bar: 20 μm) with corresponding segmentation mask. (b) Area of each segmented object obtained from the raw ­(Araw) and the corresponding 6.7:1 DP compressed image ­(ADP) for all objects. c Histogram of the difference in the single object area (∆A) determined from the raw and the statistically raw-equivalent images ­(Araw–Asynt raw), the DP ­(Araw–ADP), the 8-bit ­(Araw–A8bit), the 10:1 JPEG ­(Araw–A10:1 JPEG) and the 100:1 JPEG file ­(Araw–A100:1 JPEG). (d) Values of the parameters associated to the whole segmented image, such as number of objects and total segmented area, obtained from the DP, the 8-bit and the JPEG segmented images and normalized to the raw value. The error bars on the raw values are calculated from the standard deviation of the values obtained from the synthetic raw images. (e) Average of the standard score ǫ of 19 parameters associated to the single segmented objects. Red dotted lines correspond to ε =  ± 1. (f) PC Micrograph of MPK cells (scale bar: 50 μm) with segmentation mask, down-sampled to 8-bits and compressed into 6.1:1 DP, 10:1 and 100:1 JPEG formats. (g,h) Same as (d,e) for the MPK cells. The figure has been generated via Python 3.7.3, the Trainable Weka Segmentation plugin (v3.3.1) in ImageJ 2.3.0/1.53f, and Microsoft PowerPoint 16.53. Table 1. Parameters of the distribution of the difference in the single-object area (∆A) obtained from the synthetic and compressed PC microspheres’ image with respect to the raw format (Fig. 2c). Results R d t µA(nr pixels) σA(nr pixels) Synthetic raw-equivalent images 0.1 1.1 DP − 0.1 1.0 8 bits 3.0 3.4 10:1 JPEG 3.1 3.4 100:1 JPEG 2.9 10.3 Table 1. Parameters of the distribution of the difference in the single-object area (∆A) obtained from the synthetic and compressed PC microspheres’ image with respect to the raw format (Fig. 2c). The same analysis is performed on a PC micrograph of MPK cells with high confluence and high mean pixel intensity (Fig. 2f). In these experimental conditions, the good agreement between the DP and the raw results is confirmed. We observe a 1–2% deviation in the values of ­Atot and ­Ntot in the 8-bit and 10:1 JPEG cases (Fig. 2g). As concerns the single object parameters (Fig. 2h), the statistical equivalence of predictions on raw and DP data is confirmed despite the more complex cell spatial configuration. In contrast, predictions on single-object parameters are significantly altered in the 8-bit pixel depth and JPEG cases. This effect turns out to be more rel- evant for the MPK cells than for the microspheres’ image. Indeed, while in the case of the microspheres almost all segmentation parameters turn out to have a mean value around zero (Fig. 2e), in the case of the MPK cells the mean of almost all parameters strongly deviates from zero (Fig. 2h). We attribute this result to the fact that in the MPK cells’ image the objects to segment are large in terms of number of pixels and very dense. In contrast, the microspheres’ micrograph is characterized by very small objects and large background regions. As segmentation models depend on the loss of information at the boundaries of the objects to segment, statistical distortions due to compression are much more evident in the MPK cells’ case. D cell segmentation. We then challenge our method on more complex segmentation tasks involving 3D atasets produced by LS microscopy and OPT. https://doi.org/10.1038/s41598-022-07445-4 Scientific Reports | (2022) 12:3464 | www.nature.com/scientificreports/ Figure 3. Statistical distortions induced by compression in 3D segmentation tasks in LS microscopy. (a) 3D LS image composed of 550 slices from a portion of a mouse brain obtained after c-fos staining performed to identify neuronal nuclei (1 voxel = 5.26 μm × 5.26 μm  × 5 μm  = 138 μm3). (b) Single slice of the 3D image (scale bar: 1 mm) (c) Corresponding segmentation mask. Results R d t Parameters of the difference in the single-object volume (∆V) obtained from the synthetic and compressed LS 3D image with respect to the raw format (Fig. 3g). Table 2. Parameters of the difference in the single-object volume (∆V) obtained from the synthetic and compressed LS 3D image with respect to the raw format (Fig. 3g). By using of a RF voxel classification algorithm, we perform segmentation of neuronal nuclei in a portion of a mouse brain after c-fos antibody staining, imaged by a mesoscale Selective Plane Illumination LS Microscope (mesoSPIM) (Fig. 3a–c)24 and providing a 4.3 GB raw dataset. To obtain the 3D segmented volumes, a threshold criterion is applied to the 3D probability map obtained from the trained ML model. We perform these tests only with the DP method (7.3:1 compression ratio), and 8-bit down-sampling, as JPEG formats are not generally utilized in these fields. i As shown in Fig. 3f, the number of segmented nuclei ­Ntot (around 190′000), as well as the total segmented volume ­Vtot and surface area ­SAtot calculated from the DP dataset, display a discrepancy of 0.1–0.2% with respect to the values obtained from the raw segmented 3D image ( ǫ = −1.6, −0.9, −0.1 for ­Ntot, ­Vtot and ­SAtot respec- tively) and are perfectly compatible with the spread shown by the synthetic images. In contrast, for all global parameters, the 8-bit conversion provides 15–20% discrepancy, much larger than in the 2D case ( ǫ = 366, 87, 9 for ­Ntot, ­Vtot and ­SAtot respectively). We then compare the volume of the single objects segmented from the raw and the corresponding compressed datasets. Also in this case, we find the same objects in the different 3D images by using their center coordinates and their Euclidean distance, as in PC segmentation tests. The 2D histogram in Fig. 3d compares the volume in voxels of each single object identified in the raw ­(Vraw) and in the DP dataset ­(VDP). The accumulation of points along the diagonal of the histogram in Fig. 3d reveals the agreement of the predictions obtained with the raw and the DP datasets. The distribution of single-volume differences ∆V provided by the DP stack (Fig. 3g and Table 2) is in good agreement with that obtained from the synthetic raw files. Interestingly, the 8-bit conversion alters dramatically the distribution of ∆V (Fig. 3e). Results R d t (d,e) 2D histogram comparing the volume of the same objects in the raw ­(Vraw) and the 7.3:1 DP 3D compressed image ­(VDP) (d), as well as the 8-bit 3D image ­(V8 bits) (e). (f) Values of the parameters associated to the whole segmented image, such as the number of objects, total segmented volume and surface area, obtained from the DP and 8-bit segmented image, normalized to the raw value. The error bars on the raw values are calculated from the standard deviation of the values obtained from the synthetic 3D images. (g) Histogram of the difference in the single object volume (∆V) calculated from the raw and the statistically raw-equivalent images ­(Vraw–Vsynt raw), the DP ­(Vraw–VDP), and the 8-bit 3D image ­(Vraw– V8bit). The figure has been generated via iLastik 1.3.2, Python 3.7.3, and Microsoft PowerPoint 16.53. Figure 3. Statistical distortions induced by compression in 3D segmentation tasks in LS microscopy. (a) 3D LS image composed of 550 slices from a portion of a mouse brain obtained after c-fos staining performed to identify neuronal nuclei (1 voxel = 5.26 μm × 5.26 μm  × 5 μm  = 138 μm3). (b) Single slice of the 3D image (scale bar: 1 mm) (c) Corresponding segmentation mask. (d,e) 2D histogram comparing the volume of the same objects in the raw ­(Vraw) and the 7.3:1 DP 3D compressed image ­(VDP) (d), as well as the 8-bit 3D image ­(V8 bits) (e). (f) Values of the parameters associated to the whole segmented image, such as the number of objects, total segmented volume and surface area, obtained from the DP and 8-bit segmented image, normalized to the raw value. The error bars on the raw values are calculated from the standard deviation of the values obtained from the synthetic 3D images. (g) Histogram of the difference in the single object volume (∆V) calculated from the raw and the statistically raw-equivalent images ­(Vraw–Vsynt raw), the DP ­(Vraw–VDP), and the 8-bit 3D image ­(Vraw– V8bit). The figure has been generated via iLastik 1.3.2, Python 3.7.3, and Microsoft PowerPoint 16.53. Table 2. Parameters of the difference in the single-object volume (∆V) obtained from the synthetic and compressed LS 3D image with respect to the raw format (Fig. 3g). µV(nr voxels) σV(nr voxels) Synthetic raw-equivalent images 0.1 2.7 DP − 0.1 2.2 8 bits 7.3 6.4 Table 2. Results R d t Indeed, the distribution of ∆V in the 8-bit case is not centered https://doi.org/10.1038/s41598-022-07445-4 Scientific Reports | (2022) 12:3464 | www.nature.com/scientificreports/ Figure 4. Statistical distortions induced by compression in 3D segmentation of amyloid Alzheimer plaques imaged via OPT. (a–c) Typical OPT pipeline. Fluorescent projections of an organ at different angles are used to reconstruct its 3D image via an inverse Radon transform. Transverse slices are used for physiological analysis (scale bar: 1 mm). (d) Close-up of a reconstructed slice showing amyloid plaque deposition in the mice brain. (e) Segmented mask of amyloid plaques (scale bar: 300 μm). (f,g) Single pixel standard scores associated to the four spatial operators used for training (Gaussian Smoothing (GS), Laplacian of Gaussian (LoG), Gaussian Gradient Magnitude (GGM) and Difference of Gaussians (DoG)) applied with different sizes of the gaussian kernel σ. Standard scores of these operators are calculated on the projections (f) and the reconstructed image (g) obtained from the 7.8:1 DP compressed and the 8-bit converted 3D image. Red dotted lines correspond to ε =  ± 1. (h) Normalized values of amyloid plaque characteristics associated to the whole dataset, obtained from the raw (red), the DP compressed (blue) and the 8-bit converted datasets (green). The error bars on the raw values are determined via the synthetic statistically raw-equivalent 3D images. The figure has been generated via iLastik 1.3.2, Python 3.7.3 and Adobe Illustrator 25.0 (2021). Figure 4. Statistical distortions induced by compression in 3D segmentation of amyloid Alzheimer plaques imaged via OPT. (a–c) Typical OPT pipeline. Fluorescent projections of an organ at different angles are used to reconstruct its 3D image via an inverse Radon transform. Transverse slices are used for physiological analysis (scale bar: 1 mm). (d) Close-up of a reconstructed slice showing amyloid plaque deposition in the mice brain. (e) Segmented mask of amyloid plaques (scale bar: 300 μm). (f,g) Single pixel standard scores associated to the four spatial operators used for training (Gaussian Smoothing (GS), Laplacian of Gaussian (LoG), Gaussian Gradient Magnitude (GGM) and Difference of Gaussians (DoG)) applied with different sizes of the gaussian kernel σ. Standard scores of these operators are calculated on the projections (f) and the reconstructed image (g) obtained from the 7.8:1 DP compressed and the 8-bit converted 3D image. Red dotted lines correspond to ε =  ± 1. Scientific Reports | (2022) 12:3464 | Results R d t (h) Normalized values of amyloid plaque characteristics associated to the whole dataset, obtained from the raw (red), the DP compressed (blue) and the 8-bit converted datasets (green). The error bars on the raw values are determined via the synthetic statistically raw-equivalent 3D images. The figure has been generated via iLastik 1.3.2, Python 3.7.3 and Adobe Illustrator 25.0 (2021). around zero and has a much larger spread with respect to the distribution provided by the synthetic raw images (Fig. 3g and Table 2). This type of statistical distortion is similar to that obtained for the distribution of ∆A after segmentation of the PC microspheres’ image (Fig. 2c,e). Given the large discrepancy observed for the global parameters, the 8-bit conversion seems affecting the predictions of the segmentation models in a more complex way with respect to the 2D case. y p We then adopt our compression tolerability method on a pre-clinical application, based on the estimation of amyloidosis in a middle-aged mouse brain affected by Alzheimer’s disease via Optical Projection Tomography (OPT) imaging. OPT is well suited to image mesoscopic centimeter-sized biological specimens, such as organs, and represents the optical equivalent of computed tomography: fluorescent projection images are captured at dif- ferent angles around the specimen and the 3D image of the organ is reconstructed via a Filtered Back Projection (FBP) algorithm using an inverse Radon transform (Fig. 4a–c)25. Compared to the segmentation performed on LS microscopy data, an image reconstruction step is introduced before the AI testing, making more complex the propagation of the original noise of the raw projections through the AI pipeline. To obtain the amyloid plaques segmentation mask on the raw and compressed 3D images, we adopt the same type of RF algorithm used for the LS microscopy data to classify every voxel of the reconstructed images and apply a threshold criterion on the 3D probability map (namely 0.7 for brain anatomy and 0.5 for amyloid plaques) according to a previous ­study26. A close up of a slice of a reconstructed diseased mouse brain and the corresponding plaques segmentation mask are shown in Fig. 4d,e, respectively. In this experiment, to quantify the SL predictive uncertainty, we simulate a dataset of 10 statistically raw-equivalent projections of the mouse brain. Methods Ph Phase contrast (PC) microscopy. For PC microscopy measurements, we used two inverted PC micro- scopes (Axiovert 40C and Axiovert 25, Carl Zeiss Jena GmbH) equipped with 5×, 10× and 20× objectives and a calibrated CMOS camera (CM3-U3-31S4M-CS, Sony). Samples of carboxylate microspheres of 500 nm diam- eter (Polysciences) were obtained by deposing 5 μL of an aqueous solution with a concentration of 3.6·108 par- ticles/mL on a 170 μm thick glass slide. After solvent evaporation, PMMA at 0.1 g/mL was added to the sample, then centrifugated and dried. Microspheres were imaged with a 20 × objective and used for segmentation tests, as well as for the measurement of the microscope’s point spread function (PSF). Two cell lines with variable confluence have been cultured: human neural stem cells (HIP) (A3890101, ThermoFisher)27 and mpkCCDC14 mouse kidney collecting duct cells (MPK)28,29. Both cell lines were cultured and grown on a cell treated plastic surface at a temperature of 37 °C with an air atmosphere enriched with 5% ­CO2. Micrographs of HIP and MPK cells were obtained with a 10 × and 20 × objective, respectively. For the measurement of the modulation transfer function (MTF), we imaged the 1951 USAF test target (R3L3S1P, Thorlabs Inc.) in bright field configuration with the 5 × objective. Segmentation tests have been performed on a microspheres’ and a MPK cells’ image, that have been compressed into different formats (file sizes for all tested formats are shown in Table 3). pfi To perform these tests, we have trained machine learning models via the trainable Weka segmentation ImageJ plug-in30, combining a collection of machine learning algorithms with a selection of image features to produce pixel classification. As a classifier, we used the FastRandomForest, a multi-threaded reimplementation of Random Forest created by Fran Supek, which optimizes speed and memory ­usage30. This classifier is initialized with 200 trees and 2 random features per node. Training of this classifier is performed by manually annotating pixels in the original raw image according to two classes of identical weight: cell and background. The selected training features are: gaussian blur, hessian, sobel filter and difference of gaussians (details on the training procedure are provided in the Supplementary Information). To analyze the segmented masks, we used the “Extended Particle Analyzer” macro of the Biovoxxel toolbox in ­ImageJ23, allowing to analyze the segmented objects according to a large variety of morphological parameters, shape descriptors and angle orientations. Discussion In this work, we show the statistical nature of the distortions induced by image compression on the outcomes of SL tasks in optical microscopy. We present an experimental method capable of quantifying these statistical distortions, relying on determining the SL predictive uncertainty from the intrinsic statistical noise of raw data. As raw noise is unavoidable, our approach sets a lower bound to the predictive uncertainty in SL-assisted decision-making processes. g We show that 16-to-8 bits pixel depth reduction and JPEG compression can alter SL outcomes by more than 10 standard deviations. Interestingly, these distortions are more relevant in 3D applications: the use of 8-bit con- version brings to 5% and 15% prediction change in OPT and LS datasets segmentation, respectively, exceeding raw predictions by many standard deviations. The different distortions in the two 3D cases are probably related to the different propagation of the raw data noise through the processing pipeline. In contrast, we observe that alterations induced by the DP compression can be considered as statistically equivalent to those provided by the raw noise in both 2D and 3D cases. By respecting the raw pixel value statistics and providing compressed images with size reduced by a factor up to 10, the DP image format represents a valuable solution to computational and data management challenges associated to computer-vision automated tasks in microscopy. g g p py In this work, we also measure the statistical distortions of the predictions of a pre-clinical cell segmentation task in OPT. Our results indicate that the reliability of scientific outcomes obtained in diagnostic applications can be compromised by image compression in a non-negligible way. p y g p g g y Finally, our work highlights the importance to preserve raw pixels statistics in image processing pipelines prior to the application of a SL model. Respecting raw statistics allows to achieve the minimum prediction spread of the model, corresponding to that obtainable without processing. When used to quantify predictions’ distortions induced by lossy compression techniques, that do not preserve raw statistics, our method can still provide a criterion of tolerability of the adopted compression. www.nature.com/scientificreports/ projections datasets, and by calculating standard scores of these operators averaged over all projection pixels. As shown by Fig. 4f, the averaged standard scores belong for all parameters to the [-1,1] interval in the DP case. In contrast, the 8-bit conversion shows in general larger discrepancies for an increasing gaussian smoothing. Similar results are found when the considered processing operations are performed after the 3D reconstruction (Fig. 4g). In this case, the averaged standard scores of the gaussian smoothing operators applied over all voxels of the reconstructed 3D images are around 0 because smoothing is already performed in the applied FBP ­algorithm26. g g y g Finally, we compare the sensitivity of the quantitative analysis of amyloidosis in the mouse brain to DP com- pression and 8-bit conversion. Given the complete 3D prediction map, we compute the values of the standard scores for four plaque parameters: the total volume of plaque, the plaque load (the ratio of plaque volume to the total organ volume), the total plaque count and the plaque mean volume. The results, shown in Fig. 4h, indicate that global segmentation parameters are conserved upon DP compression. In contrast, the 8-bit conversion provides around 5% deviation with respect to the raw values, confirming the alteration of the raw predictions also in this case. Discussion However, in this case, as the raw predictive uncertainty depends on the SL algorithm and its optimization features, our technique cannot prevent dependencies between the AI model and the lossy compression.i p p y p We expect our method to be generalizable to any field where acquisition devices can be calibrated and raw data are processed before AI use. Results R d t In this case, we first apply our method to the spatial operators used for model training by considering the 7.8:1 DP compressed and the 8-bit converted https://doi.org/10.1038/s41598-022-07445-4 Scientific Reports | (2022) 12:3464 | www.nature.com/scientificreports/ Methods Ph As the RF model was trained Scientific Reports | (2022) 12:3464 | https://doi.org/10.1038/s41598-022-07445-4 www.nature.com/scientificreports/ Table 3. Size of the datasets used for the segmentation tests performed in this work. Microscopy technique RAW (16 bits) 8 bits DP 10:1 JPEG 100:1 JPEG Microspheres (Fig. 2a) PC 2.4 MB 1.2 MB (2:1) 0.36 MB (6.7:1) 0.25 MB (10:1) 21 kB (114:1) MPK cells (Fig. 2f) PC 6.3 MB 3.1 MB (2:1) 1.0 MB (6.1:1) 0.63 MB (10.1) 64 kB (98:1) Mouse brain after c-fos staining (Fig. 3a,b) LS 4.3 GB 2.1 GB (2:1) 0.6 GB (7.3:1) Mouse brain with amy- loid plaques (Fig. 4c) OPT 0.5 GB 0.25 GB (2:1) 64 MB (7.8:1) Table 3. Size of the datasets used for the segmentation tests performed in this work. on a single 16-bit raw image, the synthetic images and the DP compressed were automatically suited to be tested by the model, while the 8-bit and JPEG files needed to be upsampled to 16-bit depth. on a single 16-bit raw image, the synthetic images and the DP compressed were automatically suited to be tested by the model, while the 8-bit and JPEG files needed to be upsampled to 16-bit depth. on a single 16-bit raw image, the synthetic images and the DP compressed were automatically suited to be tested by the model, while the 8-bit and JPEG files needed to be upsampled to 16-bit depth. Light‑sheet (LS) microscopy. For LS microscopy measurements, we used a home-built mesoscale single-plane illumination ­microscope24. This setup consists of a dual-sided excitation path using a fiber-coupled multiline laser combiner (405, 488, 561 and 647 nm, Toptica MLE) and a detection path comprising a 42 Olympus MVX-10 zoom microscope with a 1 × objective (Olympus MVPLAPO 1x), a filter wheel (Ludl 96A350), and a calibrated scientific CMOS camera (Hamamatsu Orca Flash 4.0 V3). The excitation paths also contain galvo scanners for light-sheet gen- eration and reduction of shadow artifacts due to absorption of the light-sheet. In addition, the beam waist is scanned using electrically tunable lenses (ETL, Optotune EL-16-40-5D-TC-L) synchronized with the rolling shutter of the camera. Sample was illuminated by one of the two acquisition paths. Image acquisition was done using custom soft- ware written in Python 3. Z-stacks were acquired at 5 μm spacing with a zoom set at 1.25X resulting in an in-plane pixel size of 5.26 μm (2048 × 2048 pixels). Methods Ph Excitation wavelength of the c-fos antibody was set at 647 nm with an emis- sion filter LP 663 nm bandpass filter (BrightLine HC, AHF).i ii Concerning the sample preparation, mice were perfused with 4% PFA and tissue was post-fixed overnight in 4% PFA. Mouse brain were prepared for imaging following the iDISCO procedure described by Renier et al.31. To visualize a reporter of neuronal activity (c-fos), a c-fos antibody (synaptic System Anti c-Fos CN226003) was used to label the brain 1:2000 (0.25 ug/ml). This was coupled to an anti-rabbit Alexa Fluor-647 (far-red spec- trum) (5ug/ml). After clearing, brains were immersed in a 10 × 20 × 45 mm quartz cuvette filled with DiBenzyl Ether (RI 1.56).l ( ) For PSF measurements, fluorescent Tetraspeck microspheres 0.1 μm were diluted into 1% agarose. Excitation wavelength was set at 488 nm with an emission 530/40 nm bandpass filter (BrightLine HC, AHF).t i 3D Segmentation tests have been performed on the dataset obtained by imaging the mouse brain after c-fos antibody treatment (sizes of the dataset in the raw and tested compressed formats are shown in Table 3). To perform these tests and segment the c-fos positive neuron nuclei, we have trained a voxel classification model via the open-source image analysis software ­iLastik32. As a classifier, we used a Random Forest algorithm initialized with 100 trees that are built by randomly picking features among four spatial operators (Gaussian Smoothing (GS), Laplacian of Gaussian (LoG), Gaussian Gradient Magnitude (GGM) and Difference of Gaussians (DoG)) applied with a varying gaussian kernel σ.i pp y g g Training of this classifier is performed by manually annotating some voxels of the 3D raw image according to three classes of identical weight (anatomy, c-fos positive nuclei, and background).ht The trained algorithm predicted the class of the remaining voxels in the full image. To do so, the software attributed to each voxel a vector of computed features and provided a 3D probability map where the value of each voxel corresponded to the likelihood to be a c-fos positive neuronal nucleus. The final nuclei segmentation was then realized by applying a threshold value of 0.5 to the 3D probability map. As done for the 2D segmenta- tion tests, the RF model was trained on a single 16-bit raw image stack, while the 8-bit stacks are upsampled to 16-bit depth. Optical projection tomography (OPT). References Corticosteroid-dependent sodium transport in a novel immortalized mouse collecting duct principal cell line. J Am. Soc. Nephrol. 10, 923–924 (1999).f p 9. Hasler, U., Vinciguerra, M., Vandewalle, A., Martin, P. Y. & Féraille, E. Dual effects of hypertonicity on aquaporin-2 expression in cultured renal collecting duct principal cells. J. Am. Soc. Nephrol. 16, 1571–1582 (2005).i 30. Arganda-Carreras, I. et al. Trainable weka segmentation: A machine learning tool for microscopy pixel classification. Bioinformatics 33, 2424–2426 (2017). 31. Renier, N. et al. IDISCO: A simple, rapid method to immunolabel large tissue samples for volume imaging. Cell 159, 896 (2014). ( ) 32. Berg, S. et al. ilastik: Interactive machine learning for (bio)image analysis. Nat. Methods 16, 1226–1232 (2019). 33. Nguyen, D. et al. Optical projection tomography for rapid whole mouse brain imaging. Biomed. Opt. Express 8, 5637 (2017 k l l f d h d h ( ) g y p p j g p y p g g p p 34. Kak, A. C., Slaney, M. & Wang, G. Principles of computerized tomographic imaging. Med. Phys. 29, 107–107 (2002). , , y, g, p p g p g g y , ( ) 35. Schindelin, J. et al. Fiji: An open-source platform for biological-image analysis. Nat. Methods 9, 676–682 (2012). www.nature.com/scientificreports/ anatomy, and background. 12 slices (2D) from the full mouse brain were manually annotated (brain tissues and amyloid plaques), a part of them were used to train the RF algorithm, while the rest served as a test set. The final plaque segmentation and quantification was then realized by applying a threshold value of 0.5 to the 3D plaque probability map. This pipeline was the same as that provided in a previous ­study26. anatomy, and background. 12 slices (2D) from the full mouse brain were manually annotated (brain tissues and amyloid plaques), a part of them were used to train the RF algorithm, while the rest served as a test set. The final plaque segmentation and quantification was then realized by applying a threshold value of 0.5 to the 3D plaque probability map. This pipeline was the same as that provided in a previous ­study26. Received: 5 October 2021; Accepted: 10 February 2022 References e e e ces 1. Sommer, C. & Gerlich, D. W. Machine learning in cell biology-teaching computers to recognize phenotypes. J. Cell Sci. 126 5529–5539 (2013). 5529–5539 (2013). 2. Van Valen, D. A. et al. Deep learning automates the quantitative analysis of individual cells in live-cell imaging experiments. PLoS Comput. Biol. 12, e1005177 (2016).i 2. Van Valen, D. A. et al. Deep learning automates the quantitative analysis of individual cells in live-cell imaging experiments. PLoS Comput. Biol. 12, e1005177 (2016).i p 3. von Chamier, L., Laine, R. F. & Henriques, R. Artificial intelligence for microscopy: What you should know. Biochem. Soc. Trans 47, 1029–1040 (2019).i 4. Vu, Q. D. et al. Methods for segmentation and classification of digital microscopy tissue images. Front. Bioeng. Biotechnol. 7, 53 (2019). ( ) 5. Bychkov, D. et al. Deep learning based tissue analysis predicts outcome in colorectal cancer. Sci. Rep. 8, 3395 (2018).i 6. Xu, Y. et al. Large scale tissue histopathology image classification, segmentation, and visualization via deep convolutional activation features. BMC Bioinform. 18, 281 (2017).f features. BMC Bioinform. 18, 281 (2017). f 7. Laanait, N., Zhang, Z. & Schlepütz, C. M. Imaging nanoscale lattice variations by machine learning of X-ray diffraction microscopy data. Nanotechnology 27, 374002 (2016). gy 8. Bulgarevich, D. S., Tsukamoto, S., Kasuya, T., Demura, M. & Watanabe, M. Pattern recognition with machine learning on optica microscopy images of typical metallurgical microstructures. Sci. Rep. 8, 2078 (2018). y g y g 9. Maksov, A. et al. Deep learning analysis of defect and phase evolution during electron beam-induced transformations in WS2 NPJ Comput. Mater. 5, 12 (2019).i p ( ) 10. Esteva, A. et al. Dermatologist-level classification of skin cancer with deep neural networks. Nature 542, 115–118 (2017). p . Esteva, A. et al. Dermatologist-level classification of skin cancer i 11. Munir, K., Elahi, H., Ayub, A., Frezza, F. & Rizzi, A. Cancer diagnosis using deep learning: A bibliographic review. Cance 1235 (2019).h ( ) 12. Zelger, P. et al. Three-dimensional localization microscopy using deep learning. Opt. Express 26, 33166–33179 (2018). Zelger, P. et al. Three-dimensional localization microscopy using d h 3. Möckl, L., Roy, A. R. & Moerner, W. E. Deep learning in single-molecule microscopy: Fundamentals, caveats, and recent develop- ments [Invited]. Biomed. Opt. Express 11, 1633–1661 (2020).h 14. Chen, H., Engkvist, O., Wang, Y., Olivecrona, M. & Blaschke, T. The rise of deep learning in drug discovery. Drug Discov. References Today 23, 1241–1250 (2018). 15. Stokes, J. M. et al. A deep learning approach to antibiotic discovery. Cell 180, 688–702 (2020). p g pp y 16. Rivenson, Y. et al. Deep learning microscopy. Optica 4, 1437–1443 (2017).l n, Y. et al. Deep learning microscopy. Optica 4, 1437–1443 (2017). . Rivenson, Y. et al. Deep learning microscopy. Optica 4, 1437–14 l l bl d l 17. Wang, H. et al. Deep learning enables cross-modality super-resolution in fluorescence microscopy. Nat. Methods 16, 103 (2019).hl 18. Wu, Y. et al. Three-dimensional virtual refocusing of fluorescence microscopy images using deep learning. Nat. Methods 16, 1323–1331 (2019). 19. Begoli, E., Bhattacharya, T. & Kusnezov, D. The need for uncertainty quantification in machine-assisted medical decision making. Nat. Mach. Intell. 1, 20–23 (2019). 0. Sanguinetti, B. & Clausen, C. Method and device for steganographic processing and compression of image data. US Patent App 17/090,577 (2020).fi 21. Pence, W. D., Seaman, R. & White, R. L. Lossless astronomical image compression and the effects of noise. Publ. Astron. Soc. Pacific 121, 414–427 (2009). 22. Breiman, L. Random forrests. Mach. Learn. 45, 5–32 (2001).h ( ) 23. Brocher, E.-C. The BioVoxxel Image Processing and Analysis Toolbox. in Eur. BioImage Anal. Symp., Paris 336–338 (2013).h 23. Brocher, E.-C. The BioVoxxel Image Processing and Analysis Toolbox. in Eur. BioImage Anal. Symp., Paris 336–338 (2013). 24. Voigt, F. F. et al. The mesoSPIM initiative: Open-source light-sheet microscopes for imaging cleared tissue. Nat. Methods 16, 23. Brocher, E. C. The BioVoxxel Image Processing and Analysis Toolbox. in Eur. BioImage Anal. Symp., Paris 336 338 (2013). 24. Voigt, F. F. et al. The mesoSPIM initiative: Open-source light-sheet microscopes for imaging cleared tissue. Nat. Method 1105–1108 (2019). 25. Sharpe, J. et al. Optical projection tomography as a tool for 3D microscopy and gene expression studies. Science 296, 541 (2002). ( ) 6. Nguyen, D. et al. Supervised learning to quantify amyloidosis in whole brains of an Alzheimer’s disease mouse model acquired with optical projection tomography. Biomed. Opt. Express 10, 3041 (2019). 26. Nguyen, D. et al. Supervised learning to quantify amyloidosis in whole brains of an Alz with optical projection tomography. Biomed. Opt. Express 10, 3041 (2019). 7. Govindan, S., Batti, L., Osterop, S. F., Stoppini, L. & Roux, A. Mass generation, neuron labeling, and 3D imaging of minibrains Front. Bioeng. Biotechnol. 8, 1–17 (2021). g 8. Bens, M. et al. Methods Ph For OPT measurements, we processed datasets of full intact mouse brains previously studied ­in26 using an SL approach to quantify amyloidosis of an Alzheimer’s disease mouse model. The epi-fluorescent image projections were acquired with a custom mesoscopic OPT setup con- sisting of a calibrated CMOS camera (ORCA-Flash 4.0 V2, Hamamatsu) coupled to a 300-mm achromat objec- tive lens providing 0.5X magnification of the ­sample33. The sample was mounted on a motorized rotation stage allowing for projection acquisitions over 360 degrees by steps of 0.3 or 0.9 degrees in approximately five minutes. The sample fluorescent signal was excited by a 420-nm LED light source illuminating the whole organ. In this configuration, the OPT setup had an isotropic pixel-limited resolution of approximately 50 μm over the whole organ, due to the physical pixel size of the camera. Each set of projections (1024 × 1024 × 1200 matrix for 1200 projections) were previously saved as uncompressed 16-bit stacked .tif files. The 3D reconstruction of the sample was achieved by applying a filtered back-projection (FBP)34 to the raw and compressed projection sets with the Matlab iRadon function. To do so, we follow the same procedure as previously described ­in33. After reconstruc- tion, the 3D image volumes were cropped along the three dimensions in order to remove background contribu- tion and conserve the brain signal only. The intensity of each voxels was normalized over the volume using ­Fiji35 and its contrast enhancement tool before SL segmentation to accommodate for differences in dynamic range. The plaque segmentation tests relied on the same classification workflow realized with ­iLastik32 for the seg- mentation tests on LS datasets. In the case of the OPT dataset (sizes of the dataset in the raw and tested com- pressed formats are shown in Table 3), the three classes manually labeled in the training step were plaque, gf y g The plaque segmentation tests relied on the same classification workflow realized with ­iLastik32 for the seg- mentation tests on LS datasets. In the case of the OPT dataset (sizes of the dataset in the raw and tested com- pressed formats are shown in Table 3), the three classes manually labeled in the training step were plaque, https://doi.org/10.1038/s41598-022-07445-4 Scientific Reports | (2022) 12:3464 | www.nature.com/scientificreports/ Competing interests p g C. C. and B. S. are founding members of the company Dotphoton SA commercializing image compression solutions. Author contributions E.P. performed PC and LS segmentation analysis. C.S. performed OPT segmentation analysis. F.C. acquired PC images. D.N. and A.P. prepared samples and performed OPT measurements. A.T. prepared samples for LS microscopy. A.Ro. prepared samples for PC measurements. S.P. and L.B. provided LS datasets and contributed to LS microscopy data analysis. C.C. supported in the use of DP compression. T.L. co-designed the OPT system. T.L. and A.Ra. contributed to the idea of the paper and supervised the OPT data acquisition. B.S. contributed to the idea of the paper and in writing the article. E.P. and J.E. conceived the presented idea. J.E. supervised the project. E.P., C.S. and J.E. wrote the article. Acknowledgementsh The authors are grateful to Eric Feraille from University of Geneva for providing the mpkCCDC14 (MPK) cell samples, as well as F. Bugnon and C. Brack for technical support. This project has been partially funded by Innosuisse (Grant no 31434.1 IP-ICT) and by the Horizon 2020 Framework Programme of the European Union with the project ADgut (Grant no 686271). https://doi.org/10.1038/s41598-022-07445-4 Scientific Reports | (2022) 12:3464 | www.nature.com/scientificreports/ © The Author(s) 2022 Additional information T Supplementary Information The online version contains supplementary material available at https://​doi.​org/​ 10.​1038/​s41598-​022-​07445-4. Correspondence and requests for materials should be addressed to E.P. Reprints and permissions information is available at www.nature.com/reprints. Publisher’s note  Springer Nature remains neutral with regard to jurisdictional claims in published maps and nstitutional affiliations. Open Access  This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://​creat​iveco​mmons.​org/​licen​ses/​by/4.​0/. © The Author(s) 2022 https://doi.org/10.1038/s41598-022-07445-4 Scientific Reports | (2022) 12:3464 |
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Percolation Phase Transition of Surface Air Temperature Networks under Attacks of El Niño/La Niña
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Percolation Phase Transition of Surface Air Temperature Networks under Attacks of El Niño/La Niña received: 29 January 2016 accepted: 09 May 2016 Published: 26 May 2016 Zhenghui Lu1, Naiming Yuan2,3 & Zuntao Fu1 In this study, sea surface air temperature over the Pacific is constructed as a network, and the influences of sea surface temperature anomaly in the tropical central eastern Pacific (El Niño/La Niña) are regarded as a kind of natural attack on the network. The results show that El Niño/La Niña leads an abrupt percolation phase transition on the climate networks from stable to unstable or metastable phase state, corresponding to the fact that the climate condition changes from normal to abnormal significantly during El Niño/La Niña. By simulating three different forms of attacks on an idealized network, including Most connected Attack (MA), Localized Attack (LA) and Random Attack (RA), we found that both MA and LA lead to stepwise phase transitions, while RA leads to a second-order phase transition. It is found that most attacks due to El Niño/La Niña are close to the combination of MA and LA, and a percolation critical threshold Pc can be estimated to determine whether the percolation phase transition happens. Therefore, the findings in this study may renew our understandings of the influence of El Niño/La Niña on climate, and further help us in better predicting the subsequent events triggered by El Niño/La Niña. El Niño/La Niña, characterized by anomalous warming/cooling in the tropical central eastern Pacific, is one of the most important ocean-atmosphere coupled phenomena in climate system. It has great influences on climate, which may further cause natural disasters like flood and drought1–6. The climate during El Niño/La Niña is quite different from that during normal periods. Although a lot of studies about El Niño/La Niña have been done, there are still many problems unsolved, such as the prediction of El Niño/La Niña7–9, impact of El Niño/La Niña on climate10,11, distinction of different types of El Niño/La Niña12–14, and so on. In order to solve these problems, or modestly speaking, to better understand El Niño/La Niña, it is necessary to develop new methods and from new perspectives to study El Niño/La Niña. p p y Recently, more and more studies have applied the concept of complex networks to investigate climate system. It is called climate network, where different regions of the world are represented as nodes which communicate with each other by exchanging heat, material, and even forces. www.nature.com/scientificreports www.nature.com/scientificreports www.nature.com/scientificreports Scientific Reports | 6:26779 | DOI: 10.1038/srep26779 Results A k Attacks of El Niño/La Niña on surface air temperature network. In this study, the surface air tem- peratures over the spatial domain 120°E to 285°W and 20°N to 20°S are constructed as a network. As shown in Fig. 1, the nodes in the network have a resolution of 5° ×​ 5°, and they are marked with numbers from 1 to 306 according to the sequence from west to east and from north to south. Because the atmosphere above ocean can easily be heated/cooled by the sea surface temperature anomaly (SSTA), which means the links in the surface air temperature network can easily be influenced26,27. To quantify in what extent the SSTA, such as the El Niño/La Niña, can affect the network, we use two quantities, as shown below: i) The total degrees of connection (DT). As described in “Method” section, if the link strength between two nodes exceeds a threshold Q, we consider the two nodes are connected, and there will be one degree of con- nection counted. By summing the degrees over all nodes, we obtain the total degree of connection DT.h i) The total degrees of connection (DT). As described in “Method” section, if the link strength between two nodes exceeds a threshold Q, we consider the two nodes are connected, and there will be one degree of con- nection counted. By summing the degrees over all nodes, we obtain the total degree of connection DT.h y g g g T ii) The intensity of attack (P). If a node is not connected with any other nodes, we consider the node as isolated node. The intensity of attack is then defined as the fraction of isolated nodes over the total nodes. y g g g T ) The intensity of attack (P). If a node is not connected with any other nodes, we consider the node as isolated node. The intensity of attack is then defined as the fraction of isolated nodes over the total nodes. If as expected, the effects of El Niño/La Niña on the surface air temperature network can be considered as a kind of attack, which will damage the connections of the nodes in the network, then during the El Niño/La Niña events, the total degree of connection DT should decrease, and the fraction of isolated nodes (Intensity of attack, P) should increase. See Fig. Percolation Phase Transition of Surface Air Temperature Networks under Attacks of El Niño/La Niña These interactions can be represented by links, which are quantified by measuring the similarity between time series of corresponding individual nodes. Any two nodes are connected if the similarity, or link strength Wi j t , (see “Method” section) of a specific variable measured at the two nodes is beyond a threshold15. The concept of climate network effectively introduced the vast frame- work of network analysis to climate science and triggered plenty of research activities in this area, such as making climate prediction16–20, evaluating effects of natural modes of climate variability on network properties21–28, and so on. Percolation theory is one of the most interesting findings in complex networks but has never been applied to study climate network29–45. The theory indicates the existence of a critical probability Pc, such that above Pc the network is divided into isolated clusters, while below Pc a giant cluster still spans the entire network. The critical probability Pc, called as the percolation threshold, can be defined as the fraction of node removal, which in other words, means the percentage of node that the links have been cutoff from the entire network. This kind of node removal can be considered as an attack on network, and the phenomenon is markedly similar to a percolation phase transition. Once the phase state converts from stable to unstable or metastable, the network will be broken 1Lab for Climate and Ocean-Atmosphere Studies, Dept. of Atmospheric and Oceanic Sciences, School of Physics, Peking University, Beijing, 100871, China. 2Department of Geography, Climatology, Climate Dynamics and Climate Change, Justus Liebig University Giessen, 35390 Giessen, Germany. 3Key Laboratory of Regional Climate- Environment for Temperate East Asia, Institute of Atmospheric Physics, Chinese Academy of Sciences, Beijing, China. Correspondence and requests for materials should be addressed to Z.F. (email: fuzt@pku.edu.cn) Scientific Reports | 6:26779 | DOI: 10.1038/srep26779 1 tificreports/ Figure 1. Research domain of this study. With in the red box, 306 nodes with resolution of 5° ×​ 5° are selected and the corresponding surface air temperatures are constructed as a climate network. The figure is generated by using Matlab (version R2012a, http://www.mathworks.com/pl_homepage). tificreports/ Figure 1. Research domain of this study. With in the red box, 306 nodes with resolution of 5° ×​ 5° are selected and the corresponding surface air temperatures are constructed as a climate network. The figure is generated by using Matlab (version R2012a, http://www.mathworks.com/pl_homepage). www.nature.com/scientificreports/ Figure 1. Percolation Phase Transition of Surface Air Temperature Networks under Attacks of El Niño/La Niña Research domain of this study. With in the red box, 306 nodes with resolution of 5° ×​ 5° are selected and the corresponding surface air temperatures are constructed as a climate network. The figure is generated by using Matlab (version R2012a, http://www.mathworks.com/pl_homepage). totally or partly. Different phase states mean different physical conditions. In real world, many complex systems like road and railway networks, electrical power networks, internet networks, usually can be damaged by mali- cious attacks or natural disasters, such as power blackout and earthquake29,32–34,36. Analogously, in climate system, the network may also converts its state under the influences of some big climate events, such as El Niño/La Niña. From percolation theory’s point of view, we can consider the big climate events as attacks on the climate network. Since percolation theory could distinguish different network states and further monitor transitions of different states, we believe it should be also useful in climate research, and may provide us with a new perspective on the climate diagnosis, monitoring and forecasting. Hence, in this study, we will discuss the percolation phase tran- sition in the climate networks. Considering El Niño/La Niña is one the most important phenomenon in climate system, we will mainly focus on the network transition under the attack of El Niño/La Niña.hi y y This paper is organized as following: In the “Results” section, we first constructed a network by using the surface air temperature over Pacific and studied the influences of El Niño/La Niña. To check whether there is a phase transition, and according to which way the state is converted, we further established an idealized network and simulated the transitions under different kinds of attacks. With all the findings, a detailed discussion is made in the “Conclusion and Discussion” section, and a brief description of the data and methods are provided in the end of this paper. Scientific Reports | 6:26779 | DOI: 10.1038/srep26779 Results A k 2, we indeed find the expected varying patterns, which correspond to Nino3.4 index very well. Figure 2a shows the distribution of isolated nodes as a function of time (x-axis) and the node index (1~306, y-axis). The black dots represent the isolated nodes. Figure 2b shows the temporal variation of total connection degree DT (red) and intensity of attack P (blue), while Fig. 2d shows the Nino3.4 index. As one can see, during El Niño/La Niña events (when the Nino3.4 index is larger/smaller than +​0.5/−​0.5, see Fig. 2d), there will be much more nodes isolated (Fig. 2a), much stronger P (Fig. 2b), and much lower total connection degrees DT (Fig. 2b). Therefore, we believe the sea surface temperature anomaly (El Niño/La Niña) indeed can attack the surface air temperature network, and isolate nodes from the network. Since nodes can be isolated under the attack of El Niño/La Niña, and the network can be divided into several clusters (cluster, a part of the network, where any two nodes can be connected with at least one path), another question comes out: will there be a phase transition in the network? Or in other words, will there be a threshold that above the threshold the state of the network will convert abruptly? To address this question, another quantity, the giant component size S, is used in our study. As described in “Method” section, the giant component size S is defined as the ratio of the number of nodes in the largest cluster and the number of total connected nodes. It is an indicator from percolation theory, and can be used to determine whether the phase of the network has been changed significantly. As shown in Fig. 2c (the red line), in surface air temperature network, the giant compo- nent size S is significantly correlated with the attack intensity P (Corr =​ −​0.712), and S falls abruptly when P is Scientific Reports | 6:26779 | DOI: 10.1038/srep26779 2 www.nature.com/scientificreports/ Figure 2. Temporal variation of several properties of the surface air temperature network. (a) shows the distribution of isolated nodes as a function of time and the node index (1~306). The black dots represent the isolated nodes. (b) shows the temporal variation of the total connection degree DT (red) and the intensity of attack P (blue). The two curves have very significant negative correlations (r =​ −​0.893). Results A k (c) shows the giant component size S (red) as well as the intensity of attack P (blue). Again, the two curves have very significant negative correlations (r =​ −​0.712). (d) shows the monthly Niño3.4 index (black). The red dashed lines represent +​0.5 and −​0.5, respectively. Figure 2. Temporal variation of several properties of the surface air temperature network. (a) shows the distribution of isolated nodes as a function of time and the node index (1~306). The black dots represent the isolated nodes. (b) shows the temporal variation of the total connection degree DT (red) and the intensity of attack P (blue). The two curves have very significant negative correlations (r =​ −​0.893). (c) shows the giant component size S (red) as well as the intensity of attack P (blue). Again, the two curves have very significant negative correlations (r =​ −​0.712). (d) shows the monthly Niño3.4 index (black). The red dashed lines represent +​0.5 and −​0.5, respectively. increasing. This indicates the percolation phase transition may appear in the surface air temperature network. To better show how the network reacts under the attack of El Niño/La Niña, we further classified all the con- sidered time points (1948~2015) into two groups according to the Nino3.4 index. If the Nino3.4 index is larger (or smaller) than 0.5 (or −​0.5), we name them as anomalous cases, otherwise, we name them as normal cases. By studying how the giant component size S varies with different P in the two groups, we obtain Fig. 3, where significant differences can be found. During normal period (−​0.5 <​ Nino3.4 index <​ 0.5, see Fig. 3b), the giant component size S from nearly all the cases are above 0.8. While during anomalous period (Nino3.4 index >​ 0.5, or Nino3.4 index <​ −​0.5, see Fig. 3a), one can easily find the giant component size S drops abruptly from a high level (above 0.8) to a low level (below 0.6) once the attack intensity P is larger than 0.48. According to percolation theory, this kind of abrupt jumping, called abrupt percolation phase transition, is similar to the first-order phase transition, with the giant component size S suddenly jumping from a relatively high value to a relatively low value at a transition point (i.e. critical threshold), which indicates the phase state of the network converts from stable to unstable or metastable abruptly. P =​ 0.48 seems to be the critical threshold. Results A k For the cases during normal period (Fig. 3b), since the attack of the sea surface temperature anomaly (SSTA) in the tropical central eastern Pacific is not strong enough (P <​ 0.48), no abrupt changes of the network happened. However, for some cases during anomalous period (Fig. 3a), the attack of the SSTA can be strong enough (P >​ 0.48) to lead to the phase transi- tion. Therefore, from Fig. 3, we may conclude that once the attack intensity of El Niño/La Niña exceeds a critical threshold (Pc =​ 0.48), an abrupt phase transition of the above surface air temperature network can be expected. Simulation of the El Niño/La Niña attack by using idealized network. To further study the influ- ences of El Niño/La Niña on the surface air temperature network, especially to study in which way the nodes in the network are isolated under the attack of El Niño/La Niña, we in this section constructed an idealized network. We first made a statistic on the connections between each pair of nodes in the network. For the pair of nodes where connection frequently appeared (see Supplementary Fig. 2, we have defined a threshold to determine whether the connection frequently appears or not), we set there is a connection between them in the idealized network. As shown in Fig. 4, in this way, an artificial network is constructed, which may represent the “back- ground climatology” of the network. Before further studies, we checked the ability of the idealized network in simulating the reactions under attacks of El Niño/La Niña in real world network. As shown in Supplementary Fig. 3, under attacks of El Niño/La Niña, both the total degrees of connection DT and the giant component size S have shown very similar temporal patterns as the the results found from the real network. Therefore, this idealized network is reasonable and appropriate for further simulating the reactions under different kinds of attacks.f pp p gf To the end of this section, we will study the reactions of the idealized network under different kinds of attacks. Since El Niño/La Niña basically occurs in the tropical central eastern Pacific, their attacks on the surface air tem- perature network of course are more likely to appear in this region, as shown in Fig. 5b. Results A k Study of the percolation phase transition in the surface air temperature network. Two groups a l fi d d h d h f l ( ) h f Figure 3. Study of the percolation phase transition in the surface air temperature network. Two groups are classified according to the Nino3.4 index. For the group of normal cases (b), the giant component size S from nearly all the time points are above 0.8. While for the anomalous cases (a), S drops abruptly as soon as the attack intensity P exceeds a threshold (around 0.48), which indicates phase transition in the surface air temperature network. The color shown in this figure represents the probability for a given case (time point) to have the corresponding S and P. The blue circles represent the maximum values of the probability in each interval with a bin size of 0.01 from P =​ 0 to 1, which are connected by the blue lines. The vertical black dashed line represents 0.48. Figure 3. Study of the percolation phase transition in the surface air temperature network. Two groups are classified according to the Nino3.4 index. For the group of normal cases (b), the giant component size S from nearly all the time points are above 0.8. While for the anomalous cases (a), S drops abruptly as soon as the attack intensity P exceeds a threshold (around 0.48), which indicates phase transition in the surface air temperature network. The color shown in this figure represents the probability for a given case (time point) to have the corresponding S and P. The blue circles represent the maximum values of the probability in each interval with a bin size of 0.01 from P =​ 0 to 1, which are connected by the blue lines. The vertical black dashed line represents 0.48. Figure 4. The idealized network. Black lines means connections. From this figure, if two nodes are linked by a black line, we say the two nodes are set as connected in the idealized network. The figure is generated by using Matlab (version R2012a, http://www.mathworks.com/pl_homepage). Figure 4. The idealized network. Black lines means connections. From this figure, if two nodes are linked b black line, we say the two nodes are set as connected in the idealized network. The figure is generated by usin Matlab (version R2012a, http://www.mathworks.com/pl_homepage). ( p p p g ) Figure 5. Results A k Spatial distributions of node degrees Ki and node vulnerabilities Fi. (a) shows the spatial distribution of Ki in the idealized network (see Fig. 4). A node with red color means it has more connections (higher K) than a node with yellow color. Therefore, this figure corresponds to the Most connected Attack (MA), which removes nodes according to the decreasing sequence of node degree Ki. (b) shows the spatial distribution of Fi. A node with red color means it is more vulnerable (higher F) than a node with yellow color. Therefore, this figure corresponds to the Localized Attack (LA), which removes nodes according to the decreasing sequence of node vulnerability Fi. These two figures are generated by using Matlab (version R2012a, http://www.mathworks. com/pl_homepage). Figure 5. Spatial distributions of node degrees Ki and node vulnerabilities Fi. (a) shows the spatial distribution of Ki in the idealized network (see Fig. 4). A node with red color means it has more connecti Figure 5. Spatial distributions of node degrees Ki and node vulnerabilities Fi. (a) shows the spatial distribution of Ki in the idealized network (see Fig. 4). A node with red color means it has more connections (higher K) than a node with yellow color. Therefore, this figure corresponds to the Most connected Attack (MA), which removes nodes according to the decreasing sequence of node degree Ki. (b) shows the spatial distribution of Fi. A node with red color means it is more vulnerable (higher F) than a node with yellow color. Therefore, this figure corresponds to the Localized Attack (LA), which removes nodes according to the decreasing sequence of node vulnerability Fi. These two figures are generated by using Matlab (version R2012a, http://www.mathworks. com/pl_homepage). Figure 5. Spatial distributions of node degrees Ki and node vulnerabilities Fi. (a) shows the spatial distribution of Ki in the idealized network (see Fig. 4). A node with red color means it has more connections (higher K) than a node with yellow color. Therefore, this figure corresponds to the Most connected Attack (MA), which removes nodes according to the decreasing sequence of node degree Ki. (b) shows the spatial distribution of Fi. A node with red color means it is more vulnerable (higher F) than a node with yellow color. Therefore, this figure corresponds to the Localized Attack (LA), which removes nodes according to the decreasing sequence of node vulnerability Fi. Results A k Therefore, the first kind of attack we use is the Localized attack (LA)46, where the nodes are isolated according to their vulnerability to the attacks of El Niño/La Niña, see Fig. 5b. Besides LA, another two kinds of attack are also employed. One is the Most connected Attack (MA), and the other is the Random Attack (RA)31,35. MA means the nodes will be isolated Scientific Reports | 6:26779 | DOI: 10.1038/srep26779 3 www.nature.com/scientificreports/ / p / Figure 3. Study of the percolation phase transition in the surface air temperature network. Two groups are classified according to the Nino3.4 index. For the group of normal cases (b), the giant component size S from nearly all the time points are above 0.8. While for the anomalous cases (a), S drops abruptly as soon as the attack intensity P exceeds a threshold (around 0.48), which indicates phase transition in the surface air temperature network. The color shown in this figure represents the probability for a given case (time point) to have the corresponding S and P. The blue circles represent the maximum values of the probability in each interval with a bin size of 0.01 from P =​ 0 to 1, which are connected by the blue lines. The vertical black dashed line represents 0.48. Figure 4. The idealized network. Black lines means connections. From this figure, if two nodes are linked by a black line, we say the two nodes are set as connected in the idealized network. The figure is generated by using Matlab (version R2012a, http://www.mathworks.com/pl_homepage). Figure 3. Study of the percolation phase transition in the surface air temperature network. Two groups are classified according to the Nino3.4 index. For the group of normal cases (b), the giant component size S from nearly all the time points are above 0.8. While for the anomalous cases (a), S drops abruptly as soon as the attack intensity P exceeds a threshold (around 0.48), which indicates phase transition in the surface air temperature network. The color shown in this figure represents the probability for a given case (time point) to have the corresponding S and P. The blue circles represent the maximum values of the probability in each interval with a bin size of 0.01 from P =​ 0 to 1, which are connected by the blue lines. The vertical black dashed line represents 0.48. Figure 3. Conclusion and Discussionl In this work, the influence of El Niño/La Niña are studied from a new perspective: network. We consider the surface air temperature field over Pacific as a network, and the influence of El Niño/La Niña as attacks on the network. By measuring quantities such as the total degrees of connection DT and the intensity of attack P, we find the surface air temperature network will be influenced in terms of isolating nodes under the attacks of El Niño/ La Niña. By further studying the giant component size S, which is a quantity from the percolation theory, we find that there exists a critical threshold Pc, above which the network will convert its state abruptly. From the idealized network, we studied the network reactions under different kinds of attacks, and find that the most possible ways for the network to be influenced under the attacks of El Niño/La Niña, is LA (Localized Attack) and MA (Most connected Attack). This means, the nodes which located in the relevant region (tropical central eastern Pacific) and the nodes with the most connections will more likely be isolated. With the increasing of attack intensity P, more and more nodes will be isolated. At a critical point (Pc around 0.48), the state of the surface air temperature network will change abruptly from stable to unstable or metastable.hl g p y This work provides us with a new view to understand the influence of El Niño/La Niña on climate. Suppose we consider the climate state during normal periods as stable phase states. When El Niño/La Niña happens, the influence of sea surface temperature anomaly will be first transferred into the above atmosphere, where the for- mer connections (during normal periods) may be cutoff and new connections may be established. As a result, the atmosphere state may be changed, or in other words, the atmosphere will be coupled differently with the ocean. With the new state, the atmosphere will further transfer the influence of El Niño/La Niña to other remote regions, such as East Asia Monsoon region, etc. This is the well known way how El Niño/La Niña is teleconnected with remote regions, and the atmosphere plays a role as a bridge (Atmospheric Bridge). In this study, by using the con- cept of network and the theory of percolation, we studied how the El Niño/La Niña events can influence the sur- face air temperature network. Results A k These two figures are generated by using Matlab (version R2012a, http://www.mathworks. com/pl_homepage). according to the connection degrees. See Figs 4 and 5a, the node with the most connections will be removed first, and so on. While RA means the nodes will be isolated randomly. By removing nodes, in other words, by increasing the intensity of attacks P, we can calculate the corresponding giant component size S from the idealized network. Figure 6 shows the results for LA (green), MA (red), and RA (blue) respectively. Moreover, we spend 100 times in simulating the results of RA and take the average. As one can see, both LA and MA can lead to a stepwise phase transition, while RA leads to a second-order phase transition32,42. Since as shown in Fig. 2, the intensity of according to the connection degrees. See Figs 4 and 5a, the node with the most connections will be removed first, and so on. While RA means the nodes will be isolated randomly. By removing nodes, in other words, by increasing the intensity of attacks P, we can calculate the corresponding giant component size S from the idealized network. Figure 6 shows the results for LA (green), MA (red), and RA (blue) respectively. Moreover, we spend 100 times in simulating the results of RA and take the average. As one can see, both LA and MA can lead to a stepwise phase transition, while RA leads to a second-order phase transition32,42. Since as shown in Fig. 2, the intensity of Scientific Reports | 6:26779 | DOI: 10.1038/srep26779 4 www.nature.com/scientificreports/ Figure 6. Simulation results of percolation phase transition in the idealized network. Results of different kinds of attacks are shown by curves with different colors. MA: red, RA: blue, and LA: green. The areas with different colors are the results from Fig. 3a. As one can see, both MA and LA can lead to stepwise phase transitions, and the results of MA fit better to the results from real networks. The colored area mainly concentrates on two phase states, which indicates a phase transition indeed can happen under the attack of El Niño/La Niña. The vertical black dashed lines represent 0.43, 0.48 and 0.6, respectively. Figure 6. Simulation results of percolation phase transition in the idealized network. Results of different kinds of attacks are shown by curves with different colors. MA: red, RA: blue, and LA: green. Results A k The areas with different colors are the results from Fig. 3a. As one can see, both MA and LA can lead to stepwise phase transitions, and the results of MA fit better to the results from real networks. The colored area mainly concentrates on two phase states, which indicates a phase transition indeed can happen under the attack of El Niño/La Niña. The vertical black dashed lines represent 0.43, 0.48 and 0.6, respectively. attacks P due to El Niño/La Niña is below 0.6, we thus only focus on the P interval between 0 and 0.6. For MA, interestingly there exits an obvious critical threshold Pc at around 0.43, which is close to the critical threshold found in Fig. 3. For LA, one can also see a critical threshold, but is around P =​ 0.5 and P =​ 0.6. By comparing the percolation phase transition simulated from the idealized network with the results calculated from the real network (Fig. 3), it is easy to find that the results from MA have the best simulation, which means the attacks of El Niño/La Niña on the surface air temperature network may mainly follow the way of MA. That is, the nodes with the most connections may be isolated earlier than the nodes with less connections. However, we like to note that we are studying the influences of El Niño/La Niña, there should be no doubt that the nodes in the key region (tropical central eastern Pacific) are more vulnerable. As shown in Fig. 5b, the nodes in the key region are more frequently isolated under the attacks of El Niño/La Niña. Therefore, besides MA, the influence of El Niño/La Niña on the surface air temperature network should also to some extent follow the way of LA. In other words, the El Niño/La Niña may prefer two ways (MA and LA) to attack the above air temperature network. When El Niño/La Niña happens, both the local nodes and the nodes with the most connections are more likely to be isolated. But as shown in Fig. 6, it is not easy for LA to reach a critical threshold (Pc is between 0.5 and 0.6), therefore, as the nodes are removed during an El Niño/La Niña event, the state of the network is more likely to convert following the way of MA, where the Pc is much smaller (around 0.43). Conclusion and Discussionl We focused on the former connections from the normal periods (without El Niño/ La Niña) and revealed how the former connections may be attacked by El Niño/La Niña. The results show that: i) Not all sea surface temperature anomalies in the tropical central eastern Pacific can induce the transition of states in the above atmosphere. The intensity of attack should exceed the critical threshold Pc (around 0.48). ii) Wh h i fl i h h f h b h ill b l d ll i) Not all sea surface temperature anomalies in the tropical central eastern Pacific can induce the transition of states in the above atmosphere. The intensity of attack should exceed the critical threshold Pc (around 0.48). ii) When the influence is strong enough, the state of the above atmosphere will convert abruptly, not gradually. Not all sea surface temperature anomalies in the tropical central eastern Pacific can induce the transition o states in the above atmosphere. The intensity of attack should exceed the critical threshold Pc (around 0.48).l h ii) When the influence is strong enough, the state of the above atmosphere will convert abruptly, not gradu Scientific Reports | 6:26779 | DOI: 10.1038/srep26779 5 www.nature.com/scientificreports/ In this study, we classified the considered time points into two groups according to the Nino3.4 index. For the group of normal cases (−​0.5 <​ Nino3.4 index <​ 0.5), the attack intensity P is not strong enough and no abrupt changes of S is found. While for the group of anomalous cases (Nino3.4 index >​ 0.5, or Nino3.4 index <​ −​0.5), the P can be larger than 0.48, and abrupt phase transitions are found. Therefore, we need to note that the traditional definition of El Niño/La Niña is reasonable and indeed useful in monitoring El Niño/La Niña events. However, we would like to emphasize that not all the cases when Nino3.4 index >​ 0.5, or Nino3.4 index <​ −​0.5, can result in a phase transition of the surface air temperature network. As discussed above, to better evaluate the influences of El Niño/La Niña, or even predict the subsequent events trigged by El Niño/La Niña, one is suggested to first measure the intensity of attack P to check whether the above atmosphere has changed its state. Methods Surface air temperature Network. We employ the nonlinear synchronization measure to construct a network23,26,27. For each node in Fig. 1, we first extract anomaly values by subtracting long-term mean annual cycle (leap days are removed), Tk(d), where k is the node index and d is the calendar date. Then we compute, for every 30th day t in the considered time span between January 1950 and August 2015, the time-delayed cross-cor- relation coefficients for each pair of nodes i and j over 365 days before t, with time lags τ between −​200 days and 200 days. The result is denoted by τ C ( ) i j t , . Finally we determine, for each time point t, the maximum, the mean and the standard deviation of the absolute values of the cross-correlation coefficients τ C ( ) i j t , , and further define the link strength as23,26,27 τ τ τ = | | − | | | | W C C C max( ( ) ) mean( ( ) ) std( ( ) ) , (1) i j t i j t i j t i j t , , , , (1) A pair of nodes is considered as connected if their link strength is above a threshold Q48,49 (for confidence level of 99%, Q =​ 0.57. See the Supplementary Figure 1), and one degree of connection is counted. Otherwise, we say there is no connection between the two nodes under a given confidence level. By using Heaviside function, we can represent this definition as A pair of nodes is considered as connected if their link strength is above a threshold Q48,49 (for confidence level of 99%, Q =​ 0.57. See the Supplementary Figure 1), and one degree of connection is counted. Otherwise, we say there is no connection between the two nodes under a given confidence level. Conclusion and Discussionl If P is larger than Pc, the phase of the surface air temperature network will be changed abruptly, and the influence of El Niño/La Niña may further be transferred to remote regions. Otherwise, one has to consider the possible effects of El Niño/ La Niña more modestly. y Obviously, from this study we can see Pc is the key quantity, which is not only important for determining of percolation phase transition in the network, but also helpful in improving our climate prediction skills. In this work, we found Pc is around 0.48, but we need to admit that more detailed researches are still necessary. For instance, we need to check if the Pc value remains unchanged for El Niño Modoki, whether Pc =​ 0.48 is universal for all El Niño/La Niña events, and so on. Furthermore, we also need to note that, network theory and percolation theory are new in climate studies. Besides the research on El Niño/La Niña, other explorations from this new perspective are also needed in the future. Data and Methods Data. In this study, the daily surface air temperature from NCEP/NCAR reanalysis 1 project for years 1948– 2015 are used47. The data are downloaded from the National Oceanic & Atmospheric Administration (NOAA, http://www.esrl.noaa.gov/psd/data/gridded/data.ncep.reanalysis.surface.html). Spatial domain between 120°E and 285°W, 20°N and 20°S are selected for the analysis, and the horizontal resolution is 5° ×​ 5° (see Fig. 1, from the original dataset which has horizontal resolution of 2.5° ×​ 2.5°, every other grid point is selected as a node in Fig. 1). Each node is marked with numbers from 1 to 306 as node index, according to the sequence from west to east and from north to south. Besides the surface air temperature, the monthly Nino3.4 Sea Surface Temperature Anomaly (Nino34 index) is also used as an indicator of El Niño/La Niña events (see Fig. 2d). The index is also downloaded from NOAA (http://www.esrl.noaa.gov/psd/data/climateindices/). Scientific Reports | 6:26779 | DOI: 10.1038/srep26779 Methods 2c, the giant component size S are shown as the red curve. It is worth to note that besides the S defined as equation (8), there is another widely used definition, where the giant component size are defined as the ratio of the number of nodes in the largest cluster and the number of the total nodes50. By using this definition, we find similar results as what we show in this paper, therefore the conclusions in our research stay unchanged. Idealized network. In meteorology, composite analysis is widely used to determine a background field dur- ing a specific time period. In this study, we borrow this idea to construct a idealized network. Suppose there exists an idealized network which represents the state of climate network under slight or even no attacks from El Niño/La Niña, but when El Niño/La Niña happens, it can react similarly as the real network. To establish such a network, we need to first find the time points when no (or only very slight) attack happens. By setting St >​ 0.98, we can select the time points out as T′​, ′ = ′ ′ ′ ′   T t t t t { , , , , , }, (9) k 1 2 3 ′ = ′ ′ ′ ′   T t t t t { , , , , , }, k 1 2 3 (9) where t′​k represents the time point when there is no (or very slight) attack and the giant component size S >​ 0.98. Then we calculate the frequency of occurrence for each connection (e.g., connection between node i and node j, we can also name it as edge between i and j) in the selected time points T′​, = ∑ ′ ∈′ E A L T ( ) , (10) i j t T i j t , , (10) where L(T′​) is the number of time points in T′​, and Ei,j represents the frequency of occurrence of the connection between node i and node j. If Ei,j is higher than a threshold E, which indicates a high possibility that the two nodes are connected, we therefore will set the two nodes connected in the idealized network, as Ci,j =​ 1. Otherwise, we set the two nodes separated, as Ci,j =​ 0. Methods By using Heaviside function, we can represent this definition as θ = − =     > < A W Q W Q W Q ( ) 1, 0, , (2) i j t i j t i j t i j t , , , , (2) and the degrees of node i at time t is thus represented as, nd the degrees of node i at time t is thus represented as, ∑ = = = K A , (3) i t j j i j t 1 306 , (3) where i and j are both the node indexes from 1 to 306. By summing the degrees of all the nodes, we will further obtain the total degrees of connection DT, where i and j are both the node indexes from 1 to 306. By summing the degrees of all the nodes, we will further obtain the total degrees of connection DT, ∑ = . = = D K (4) T i i i t 1 306 ∑ = . = = D K T i i i t 1 306 (4) If at a given time point t, node i has no connections with any other nodes, = K 0 i t , we name it as an isolated node. To better describing this concept, we further defined a new quantity as Ri t, Scientific Reports | 6:26779 | DOI: 10.1038/srep26779 6 www.nature.com/scientificreports/ =     = > R K K 1, 0 0, 0 , (5) i t i t i t =     = > R K K 1, 0 0, 0 , i t i t i t (5) where i is the node index from 1 to 306. If the node i at time point t is an isolated node, we set = R 1 i t , otherwise, = R 0 i t . See Fig. 2a, the distribution of isolated nodes over time is shown as black dots. where i is the node index from 1 to 306. If the node i at time point t is an isolated node, we set = R 1 i t , otherwise = 0 i t . See Fig. 2a, the distribution of isolated nodes over time is shown as black dots. Intensity of attacks. Methods In percolation theory, intensity of attacks is usually defined as the fraction of nodes removed from original network. When a node is removed, all links between this node and other nodes will be cut off and this node will become an isolated node. Analogously, in the surface air temperature network, we consider the isolated nodes as the result of attacks such as El Niño/La Niña, and define the intensity of attacks at time point t as, = ∑= = P R 306 , (6) t i i i t 1 306i (6) where Ri t is quantity defined in equation (5), and Pt represents the fraction of the isolated nodes, which as defined is the intensity of attacks at time point t. As shown in Fig. 2b,c, the blue curve shows the intensity of attacks over time. Node Vulnerability. To quantify the vulnerability of a given node under attacks, we defined another quantity as, = ∑∈ F R L T ( ) , (7) i t T i t = ∑∈ F R L T ( ) , i t T i t (7) where L(T) represents the length of a given time period (the total time points), and Fi is the fraction of the time points when node i is isolated over the total time points. See Fig. 5b, the spatial distribution of Fi is show with different colors. where L(T) represents the length of a given time period (the total time points), and Fi is the fraction of the time points when node i is isolated over the total time points. See Fig. 5b, the spatial distribution of Fi is show with different colors. Giant component size. In percolation theory, giant component size is used to measure fragmentation and functionality of network, and indicate the phase state of network. To calculate the giant component size, one needs to first find the largest cluster, where i) any two nodes can be connected with at least one path, and ii) the number of nodes is the highest. Then the giant component size at time point t can be defined as, = −∑= = S N R 306 , (8) t LC i i i t 1 306 (8) where NLC is the number of nodes in the largest cluster, and St represents the giant component size at time point t. See Fig. Scientific Reports | 6:26779 | DOI: 10.1038/srep26779 Methods With the help of Heaviside function, Ci,j can be summarized as, θ = − =     > < . C E E E E E E ( ) 1, 0, (11) i j i j i j i j , , , , (11) The threshold E should satisfy two conditions. First, with an appropriate E, the established idealized network should have a big giant component size, S >​ 0.98. Second, an appropriate threshold E should make sure that the The threshold E should satisfy two conditions. First, with an appropriate E, the established idealized network should have a big giant component size, S >​ 0.98. Second, an appropriate threshold E should make sure that the Scientific Reports | 6:26779 | DOI: 10.1038/srep26779 7 7 www.nature.com/scientificreports/ total degrees of connection DT of the idealized network does not exceed the range of DT of the real networks over the selected time points T′​. As introduced in Supplementary Fig. 2, we in this study choose E =​ 0.29. According to the above procedures, the idealized network is constructed, as shown in Fig. 4. total degrees of connection DT of the idealized network does not exceed the range of DT of the real networks over the selected time points T′​. As introduced in Supplementary Fig. 2, we in this study choose E =​ 0.29. According to the above procedures, the idealized network is constructed, as shown in Fig. 4. total degrees of connection DT of the idealized network does not exceed the range of DT of the real networks over the selected time points T′​. As introduced in Supplementary Fig. 2, we in this study choose E =​ 0.29. According to the above procedures, the idealized network is constructed, as shown in Fig. 4. References l k Emergence of El Niño as an Autonomous Component in the Climate Network. Phys. Rev Lett. 107, 148501 (2011).if 27. Yamasaki, K., Gozolchiani, A. & Havlin, S. Climate Networks around the Globe are Significantly affected by El Niño. Phys. Rev. Lett. 100, 228501 (2008). 8. Boers, N., Donner, R. V., Bookhagen, B. & Kurths, J. Complex network analysis helps to identify impacts of the El Niño Southern Oscillation on moisture divergence in South America. Climate Dyn. 45, 619–632 (2015).f 9. Parshan, R., Buldyrev, S. V. & Havlin, S. Critical effect of dependency groups on the function of networks. PNAS 108, 1007–1010 (2011). ) orogovtsev, S. N., Goltsev, A. V. & Mendes, J. F. F. Critical phenomena in complex networks. Rev Mod Phys. 80, 1275–1335 (2008). lbert R Jeong H & Barabási A L Error and attack tolerance of complex networks Nature 406 378 382 (2000) 0. Dorogovtsev, S. N., Goltsev, A. V. & Mendes, J. F. F. Critical phenomena in complex networks. Rev Mod Phys. 80, 1275–1335 (2008) 30. Dorogovtsev, S. N., Goltsev, A. V. & Mendes, J. F. F. Critical phenomena in complex networks. Rev M 30. Dorogovtsev, S. N., Goltsev, A. V. & Mendes, J. F. F. Critical phenomena in complex networks. Rev Mod Phys. 80, 1275–1335 (2008). 31. Albert, R., Jeong, H. & Barabási, A.-L. Error and attack tolerance of complex networks. Nature 406, 378–382 (2000).h g p p y 1. Albert, R., Jeong, H. & Barabási, A.-L. Error and attack tolerance of complex networks. Nature 406, 378–382 (2000).h 31. Albert, R., Jeong, H. & Barabási, A.-L. Error and attack tolerance of complex networks. Nature 406, . Complex networks: The fragility of interdependency. Nature 464, h l l l h p g ph g y p y 3. Buldyrev, S. V., Parshani, R., Paul, G., Stanley, H. E. & Havlin, S. Catastrophic cascade of failures in interdependent networks. Nature 464, 1025–1028 (2010).h 4. Bashan, A., Berezin, Y., Buldyrev, S. V. & Havlin, S. The extreme vulnerability of interdependent spatially embedded networks Nature Phys. 9, 667–672 (2013). y 35. Gallos, L. K., Cohen, R., Argyrakis, P., Bunde, A. & Havlin, S. Stability and Topology of Scale-Free Networks under Attack and Defense Strategies. Phys. Rev. Lett. 94, 188701 (2005). Defense Strategies. Phys. Rev. Lett. 94, 188701 (2005). 6. Schneider, C. M., Moreira, A. A., Andrade, J. S., Havlin, S. & Herrmann, H. J. Mitigation of malicious attacks on networks. References l k A., Swanson, K. L. & Roebber, P. J. What Do Networks Have to Do with Climate? Bull. Amer. Meteor. Soc. 87, 585–595 (2006). 15. Tsonis, A. A., Swanson, K. L. & Roebber, P. J. What Do Networks Have to Do with Climate? Bull. Amer. Meteor. Soc. 87, 585–59 6 L d h J l I d El Ni f i b i i d i PNAS ( ) 15. Tsonis, A. A., Swanson, K. L. & Roebber, P. J. What Do Networks Have to Do with Climate? Bull. Amer. Meteor. Soc. 87, 585–595 (2006). 16. Ludescher, J. et al. Improved El Niño forecasting by cooperativity detection. PNAS 110, 19172–19173 (2013). , , , , J , 16. Ludescher, J. et al. Improved El Niño forecasting by cooperativity detection. PNAS 110, 19172–19173 (2013). 16. Ludescher, J. et al. Improved El Niño forecasting by cooperativity detection. PNAS 110, 1917 17. Ludescher, J. et al. Very early warning of next El Niño. PNAS 111, 2064–2066 (2014).l 18. Boers, N. et al. Prediction of extreme floods in the eastern Central Andes based on a complex networks approach. Nat. Commun. 5, 5199 (2014). 19. Feng, Q. Y., Viebahn, J. P. & Dijkstra, H. A. Deep ocean early warning signals of an Atlantic MOC collapse. Geophys. Res. Lett. 41, 6009–6015 (2014). 0. van der Mheen, M. et al. Interaction network based early warning indicators for the Atlantic MOC collapse. Geophys. Res. Lett. 40 2714–2719 (2013). 1. Tsonis, A. A., Wang, G., Swanson, K. L., Rodrigues, F. A. & Costa, L. d. F. Community structure and dynamics in climate networks Climate Dyn. 37, 933–940 (2010).f y 22. Radebach, A., Donner, R. V., Runge, J., Donges, J. F. & Kurths, J. Disentangling differnet types of El Niño episodes by evolving climate network analysis. Phys. Rev. E 88, 052807 (2013). 3. Gozolchiani, A., Yamasaki, K., Gazit, O. & Havlin, S. Pattern of climate network blinking links follows El Niño events. Europhys. Lett 83, 28005 (2008). 4. Guez, O., Gozolchiani, A., Berezin, Y., Brenner, S. & Havlin, S. Climate network structure evolves with North Atlantic Oscillation phases. Europhys. Lett. 98, 38006 (2012). 25. Guez, O., Gozolchiani, A., Berezin, Y., Wang, Y. & Havlin, S. Global climate network evolves with North Atlantic Oscillation phases: Coupling to Southern Pacific Ocean. Europhys. Lett. 103, 68006 (2013). i 6. Gozolchiani, A., Havlin, S. & Yamasaki, K. References l k 1. Clarke, A. J. An introduction to the dynamics of El Niño & the Southern Oscillation Ch. 12, 249 279 (Academic Press, 2008). 2. Rhilander, S. G. El Niño, La Niña, and the southern oscillation Vol. 46 (eds Holton, J. R. & Dmowska, R.) Ch. 1, 9–56 (Academic Press, 1989). 2. Rhilander, S. G. El Niño, La Niña, and the southern oscillation Vol. 46 (eds Holton, J. R. & Dmowska, R.) Ch. 1, 9–56 (Academic Press, 1989). . Dijkstra, H. A. & Burgers, G. Fluid dynamics of El Niño variabilit j g y y 4. Wang, C., Deser, C., Yu, J. -Y., DiNezio, P. & Clement, A. El Niño and southern oscillation (ENSO): a review. Coral Reefs of the Eastern Pacific 3–19 (2012). . C. H. Adjustment of the Remote Tropical Climate to El Niño Cond fi . Lintner, B. R. & Chiang, J. C. H. Adjustment of the Remote Tropic g j p 6. Okumura, Y. M. & Deser, C. Asymmetry in the Duration of El Niño and La Niña. J. Climate 23, 5826–5843 (2010). y y 7. Wittenberg, A. T., Rosati, A., Delworth, T. L., Vecchi, G. A. & Zeng, F. ENSO Modulation: Is It Decadally Predictable? J. Climate 27, 2667–2681 (2014). 8. Latif, M. et al. A review of the predictability and prediction of ENSO. J. Geophys. Res. 103, 14375 (1998). El Niño Physics and El Niño Predictability. Annual Review of Mar 9. Clarke, A. J. El Niño Physics and El Niño Predictability. Annual Review of Marine Science 6, 79–99 (2014). 10. Webster, P. J. & Yang, S. Monsoon and ENSO: Selectively interactive systems. Quart. J. Roy. Meteor. Soc. 118, 877 926 (1992). 11. Kumar, K. K., Rajagopalan, B., Hoerling, M., Bates, G. & Cane, M. Unraveling the Mystery of indian Monsoon Failure During El Niño. Science 314, 115–119 (2006).i 2. Weng, H., Ashok, K., Behera, S. K., Rao, S. A. & Yamagata, T. Impacts of recent El Niño Modoki on dry/wet conditions in the Pacific rim during boreal summer. Climate Dyn. 29, 113–129 (2007).i g y 13. Weng, H., Behera, S. K. & Yamagata, T. Anomalous winter climate conditions in the Pacific rim during recent El Niño Modoki and El Niño events. Climate Dyn. 32, 663–674 (2008). y 14. Karnauskas, K. B. Can we distinguish canonical El Niño from Modoki? Geophys. Res. Lett. 40, 5246–5251 (2013). g p y ( ) 15. Tsonis, A. Scientific Reports | 6:26779 | DOI: 10.1038/srep26779 References 1. Clarke, A. J. An introduction to the dynamics of El Niño & the Southern Oscillation Ch. 12, 249–279 (Academic Press, 2008). References l k 10, 97–121 (Cambridge University Press, 2010). Author Contributions Z.L. and Z.F. designed the study. Z.L. performed the study. N.Y. wrote the manuscript. All authors reviewed the manuscript. Z.L. and Z.F. designed the study. Z.L. performed the study. N.Y. wrote the manuscript. All authors reviewed the manuscript. Acknowledgements g Many thanks are due to support from National Natural Science Foundation of China (No. 41175141 and No. 41405074) and from the Basic Research Fund of CAMS (Grands 2015Y011). This work is also funded by the g Many thanks are due to support from National Natural Science Foundation of China (No. 41175141 and No. 41405074) and from the Basic Research Fund of CAMS (Grands 2015Y011). This work is also funded by the LOEWE excellence cluster FACE2FACE of the Hessen State Ministry of Higher Education, Research and the Arts. Scientific Reports | 6:26779 | DOI: 10.1038/srep26779 References l k PNAS 108, 3838–3841 (2011). 7. Danziger, M. M., Bashan, A., Berezin, Y. & Havlin, S. Percolation and cascade dynamics of spatial networks with partial dependency J. Complex Netw. 2, 460–474 (2014).f p 38. Boettcher, S., Singh, V. & Ziff, R. M. Ordinary percolation with discontinuous transitions. Nat. Commun. 3, 787 (2012).f p . Boettcher, S., Singh, V. & Ziff, R. M. Ordinary percolation with di 39. Zhao, J. -H., Zhou, H. -J. & Liu, Y. -Y. Inducing effect on the percolation transition in complex networks. Nat. Commun. 4 (2013). 40. Gao, J., Buldyrev, S. V., Stanley, H. E., Xu, X. & Havlin, S. Percolation of a general network of networks. Phys. Rev. E. 88, 062816 (2013). 41. Hu, Y. et al. Percolation of interdependent networks with intersimilarity. Phys. Rev. E. 88, 052805 (2013).i 42. Zhou, D. et al. Simultaneous first- and second-order percolation transitions in interdenpendent networks. Phys. Rev. E. (2014). 43. Nagler, J., Tiessen, T. & Gutch, H. W. Continuous Percolation with Discontinuities. Phys. Rev. X. 2, 031009 (2012). , D’Souza, R. M. & Spencer, J. Explosive Percolation in Random Ne 44. Achlioptas, D., D’Souza, R. M. & Spencer, J. Explosive Percolation in Random Networks. Science 323, 1453–1455 (2009). p p p 45. Havlin, S., Stanley, H. E., Bashan, A., Gao, J. & Kenett, D. Y. Percolation of interdependent network of networks. Chaos Soliton F 72, 4–19 (2015). h l l d k ll b dd d k h d d 46. Berezin, Y., Bashan, A., Danziger, M. M., Li, D. & Havlin, S. Localized attacks on spatially embedded networks with dependencies. Sci. Rep. 5, 8934 (2015).h p ( ) 47. Kalnay, E. et al. The NCEP/NCAR 40-year reanalysis project. Bull. Amer. Meteor. Soc. 77, 437–470 (1996). Scientific Reports | 6:26779 | DOI: 10.1038/srep26779 8 www.nature.com/scientificreports/ g p y y 49. Guez, O., Gozolchiani, A. & Havlin, S. Influence of autocorrelation on the topology of the climate network. Phys. Rev. E. 90, 062814 (2014). C h & l S C l k b d f ( d C h & l S ) Ch (C b d g p y y 49. Guez, O., Gozolchiani, A. & Havlin, S. Influence of autocorrelation on the topology of the climate network. Phys. Rev. E. 90, 062814 (2014). 50. Cohen, R. & Havlin, S. Complex networks: structure, robustness and function (eds Cohen, R. & Havlin, S.) Ch. Additional Information Supplementary information accompanies this paper at http://www.nature.com/srepi Supplementary information accompanies this paper at http://www.nature.com/srepi Competing financial interests: The authors declare no competing financial interests. Competing financial interests: The authors declare no competing financial interests. How to cite this article: Lu, Z. et al. Percolation Phase Transition of Surface Air Temperature Networks unde Attacks of El Niño/La Niña. Sci. Rep. 6, 26779; doi: 10.1038/srep26779 (2016). This work is licensed under a Creative Commons Attribution 4.0 International License. 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Alpinumisoflavone ameliorates choroidal neovascularisation and fibrosis in age-related macular degeneration in in vitro and in vivo models
Scientific reports
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www.nature.com/scientificreports OPEN Alpinumisoflavone ameliorates choroidal neovascularisation and fibrosis in age‑related macular degeneration in in vitro and in vivo models Eunhye Yu1,4, Yunjeong Song1,4, Sun Mi Gu1, Yang Hee Jo2, Sang Won Yeon2, Kyu Jin Han3, Mi Kyeong Lee2, Jung Kee Min1,3* & Jaesuk Yun1* Age-related macular degeneration (AMD) is a major cause of vision loss in the elderly population. Anti-vascular endothelial growth factor (VEGF) antibody therapy is applicable to neovascularisation of AMD; however, the prevention of fibrosis after anti-VEGF monotherapy is an unmet medical need. Subretinal fibrosis causes vision loss in neovascular age-related macular degeneration (nAMD) even with anti-VEGF therapy. We report the anti-fibrotic and anti-neovascularisation effects of alpinumisoflavone (AIF), an isoflavonoid derived from unripe Maclura tricuspidata fruit, in in vitro and in vivo models. For in vitro study, we treated ­H2O2 or THP-1 conditioned media (TCM) following activation with phorbol 12-myristate 13-acetate (PMA) and lipopolysaccharide (LPS) in a human retinal pigment epithelial cell line (ARPE-19). Choroidal neovascularisation (CNV) was induced by laser photocoagulation in mice, immediately followed by intravitreal administration of 25 μg AIF. CNV area and fibrosis were measured 7 days after laser photocoagulation. AIF showed anti-fibrosis and anti-neovascularisation effects in both the models. The laser induced CNV area was reduced upon AIF administration in nAMD mouse model. Additionally, AIF decreased the levels of the cleaved form of crystallin alpha B (CRYAB), a chaperone associated with VEGF stabilisation and fibrosis. Our results demonstrate a novel therapeutic application of AIF against neovascularisation and fibrosis in nAMD. Age-related macular degeneration (AMD) is a degenerative eye disease and is the leading cause of irreversible vision loss in elderly p ­ eople1. It is a complex multifactorial disease, and its pathogenesis is not fully u ­ nderstood2. Choroidal neovascularisation (CNV), vascular leakage, and haemorrhage are the hallmarks of n ­ AMD3. Antivascular endothelial growth factor (VEGF) pharmaceutical products have successfully been used as a first-line medication for nAMD t­ reatment4–7. However, subretinal fibrosis is a risk factor for vision loss that occurs despite anti-VEGF ­treatment8. Subretinal fibrosis may be initiated by CNV development with haemorrhage and the inflammatory response of the retinal and subretinal regions. Various cell types, such as retinal pigment epithelium (RPE) cells, immune cells, and fibroblasts, are associated with this pathological process, which consequently induces tissue scarring and blindness in patients with ­nAMD9. However, RPE cells are also known to produce VEGF, which is a target of nAMD ­treatment10,11 and express several fibrosis markers dependent on the epithelialto-mesenchymal transition p ­ rocess12. In contrast to anti-VEGF pharmaceutics, there are no effective anti-fibrotic agents available for nAMD treatment thus far. Therefore, the development of an anti-fibrotic agent as well as anti-neovascularisation therapy may facilitate better therapeutic intervention of nAMD. Alpinumisoflavone (AIF) is an isoflavonoid isolated from the unripe fruits of Maclura tricuspidata (previously known as Cudrania tricuspidata)13–16. AIF has various pharmacological activities such as anti-inflammatory17, 1 College of Pharmacy, Chungbuk National University, 194‑31 Osongsaengmyeong 1‑ro, Osong‑eup, Cheongju‑si, Chungcheongbuk‑do 28160, Republic of Korea. 2College of Pharmacy, Chungbuk National University, 194‑21 Osongsaengmyeong 1‑ro, Osong‑eup, Cheongju‑si, Chungcheongbuk‑do 28160, Republic of Korea. 3Department of Ophthalmology, Ulsan University Hospital, University of Ulsan, College of Medicine, 877, Bangeojinsunhwando‑ro, Dong‑gu, Ulsan 44033, Republic of Korea. 4These authors contributed equally: Eunhye Yu and Yunjeong Song. *email: jkmin@uuh.ulsan.kr; jyun@chungbuk.ac.kr Scientific Reports | (2022) 12:14316 | https://doi.org/10.1038/s41598-022-18531-y 1 Vol.:(0123456789) www.nature.com/scientificreports/ Figure 1.  Inhibitory effects of alpinumisoflavone (AIF) on THP-1 conditioned media (TCM)-induced expression of vascular endothelial growth factor A (VEGFA) in ARPE-19 cells. (a) ARPE-19 cells were treated with 0.1% DMSO in RPMI-1640 complete media or AIF (0, 1, 5, or 10 µM) in TCM. VEGFA expression was measured by dot blot. The data were analysed using one-way ANOVA followed by the Holm-Šídák post-hoc t-test (*p < 0.05 vs. non-TCM group, ##p < 0.01 vs. cells treated with only TCM group) and are expressed as mean ± S.E. (n = 3–6). Uncropped blot images are presented in supplementary information (Supplementary Fig. 2). (b,c) ARPE-19 cells were treated with 0.1% DMSO in RPMI-1640 complete media or AIF (0, 0.1, 1, 5, or 10 µM) in TCM. The fluorescence intensity was measured using the FlexStation 3 Multi-Mode Microplate Reader. Data were analysed using one-way ANOVA followed by the Holm-Šídák post-hoc t-test test (*p < 0.05 vs. non-TCM group, #p < 0.05 vs. cells treated with only TCM group) and are expressed as the mean ± S.E. (n = 6–9). anti-metastatic18, and ­antioxidant17 effects. Notably, methylalpinumisoflavone shows anti-VEGF activity via hypoxia-inducible factor-1 (HIF-1) i­ nhibition19 and flavones has anti-fibrotic a­ ctivity20,21. In this study, we tested the effects of AIF on expression level of VEGF, fibrosis markers such as alpha smooth muscle actin (alpha-SMA) and collagen type I (collagen I) in ARPE-19 cell, which has been widely used in eye ­research22, besides measuring the CNV area and fibrosis in an nAMD mouse model following AIF treatment in an attempt to elucidate whether AIF demonstrates anti-neovascularisation and anti-fibrotic activity in nAMD models. In addition, we studied the effects of AIF on the expression levels of chaperones associated with VEGF and fibrosis markers with the aim of deciphering the molecular mechanism underlying AIF activity in nAMD in vivo and in vitro models. Results TCM increased vascular endothelial growth factor A expression in ARPE‑19 cells. Macrophages play a critical role in the development of ­AMD23–25. Thus, we stimulated ARPE-19 cells with TCM to induce macrophage inflammatory responses, so that we can evaluate the effect of TCM on vascular endothelial growth factor A (VEGFA) expression after 3 h of treatment in ARPE-19 cells. The expression level of VEGFA in ARPE19 cells was increased by TCM. However, AIF co-treatment inhibited VEGFA expression induced by TCM. The most significant reduction of VEGFA was shown in AIF of 5 µM (Fig. 1a; F(4,16) = 9.627, p < 0.001). We performed immunocytochemical analysis to determine the expression of VEGFA and alpha-SMA in ARPE-19 cells. The fluorescence intensity of VEGFA or alpha-SMA was increased by TCM. We found that 1, 5, and 10 μM AIF co-treatment inhibited fluorescence intensity of VEGFA and 0.1, 1, 5, and 10 μM AIF Scientific Reports | Vol:.(1234567890) (2022) 12:14316 | https://doi.org/10.1038/s41598-022-18531-y 2 www.nature.com/scientificreports/ Figure 2.  Inhibitory effects of alpinumisoflavone (AIF) on ­H2O2-induced expression of vascular endothelial growth factor A (VEGFA) in ARPE-19 cells. (a) ARPE-19 cells were treated with the indicated concentrations of ­H2O2 for 24 h. The fluorescence intensity of ARPE-19 cells treated with H ­ 2O2 were measured. Data were analysed using one-way ANOVA followed by the Holm-Šídák post-hoc t-test (*p < 0.05 vs. ­H2O2 0 µM group) and are expressed as mean ± S.E. (n = 328–406). (b) VEGFA expression was measured by dot blot. ARPE-19 cells stimulated with ­H2O2 were treated with 5 µM AIF. Data were analysed using one-way ANOVA followed by the Holm-Šídák post-hoc t-test (*p < 0.05 vs. non-H2O2 group, #p < 0.05 vs. cells treated with only ­H2O2 group) and are expressed as mean ± S.E. (n = 3–9). co-treatment inhibited fluorescence intensity of alpha-SMA expression induced by TCM (Fig. 1b; F(5,36) = 6.412, p < 0.001; Fig. 1c; F(5,36) = 6.804, p < 0.001). H2O2 increased VEGFA expression in ARPE‑19 cells. It was known that oxidative stress is associated with VEGF ­expression26–30. Therefore, we also evaluated the effect of ­H2O2 on VEGF expression after 24 h of treatment in ARPE-19 cells. VEGFA expression increased after the addition of 50 and 100 µM H ­ 2O2 to ARPE19 cells. We found that ARPE-19 cells treated with 100 μM H ­ 2O2 for 24 h significantly increases fluorescence intensity of VEGFA (Fig. 2a; F(2,1093) = 11.429, p < 0.001). AIF reduced the expression level of VEGFA in ARPE‑19 cell lysates. ARPE-19 cells were treated with 5 µM AIF for 24 h under low oxidative stress conditions (100 µM of ­H2O2). Thereafter, dot blot analysis was performed to detect VEGFA expression. VEGFA expression decreased under AIF treatment conditions (Fig. 2b; F(2,13) = 5.469, p = 0.019). AIF reduced RNA expression level of alpha‑SMA and collagen I in ARPE‑19 cell lysates. We used qPCR to determine the expression levels of fibrosis markers (Fig. 3). We normalised the quantified mRNA of each gene to the corresponding glyceraldehyde 3-phosphate dehydrogenase (GAPDH) mRNA levels. We showed that AIF reduced the mRNA expression level of alpha-SMA and collagen I but not N-Cadherin in ARPE-19 cells (Fig. 3b; p = 0.0164; Fig. 3c; p = 0.0205). AIF and bevacizumab decreased the CNV area in laser‑induced mouse model. To evaluate the effects of AIF on CNV development, we measured the CNV area in laser-induced mouse model. Immediately after laser photocoagulation, a single intravitreal injection of AIF was administered to the mice. Bevacizumab intravitreal injection was also administered as a positive control group. A week later, CNV lesions were visualised by perfusing mice with fluorescein and staining the choroidal vasculature with isolectin B4 (Fig. 4). AIF and bevacizumab-treated eyes had a reduction in the area of CNV lesions compared with that in the non-treated control eyes (Fig. 4a; F(2,22) = 10.105, p < 0.001; Fig. 4b; F(2,22) = 4.477, p = 0.023). Scientific Reports | (2022) 12:14316 | https://doi.org/10.1038/s41598-022-18531-y 3 Vol.:(0123456789) www.nature.com/scientificreports/ Figure 3.  Inhibitory effects of alpinumisoflavone (AIF) on the expression fibrosis marker of ARPE-19 cells. ARPE-19 cells were treated with 5 µM AIF. AIF reduced the RNA expression level of (b) alpha smooth muscle actin (alpha-SMA) and (c) collagen I in ARPE-19 cell lysates. The statistical analysis was performed using Mann–Whitney U test (*p < 0.05 vs. control group) and the results are expressed as mean ± SEM (n = 3 biological replicates). qRT-PCR for each biological replicate was performed in duplicate. Figure 4.  Effects of alpinumisoflavone (AIF) on laser-induced mouse model on choroidal neovascularisation (CNV) area. AIF suppresses the development of the CNV area in the laser-induced CNV mouse model. Representative images of CNV lesions and quantification of its area and volume in mice eyes that underwent laser photocoagulation administered with bevacizumab or AIF (Both 1 μL, 25 μg, intravitreal injection). One week later, the CNV area was analysed via measurement of fluorescence intensity of images with (a) fluorescein and (b) isolectin B4 positive area. Data were analysed using one-way ANOVA followed by the Holm-Šídák posthoc t-test (*p < 0.05 and **p < 0.01 vs. control group). The results are expressed as mean ± S.E. (n = 7–9). The scale bar in each image is 100 μm. Scientific Reports | Vol:.(1234567890) (2022) 12:14316 | https://doi.org/10.1038/s41598-022-18531-y 4 www.nature.com/scientificreports/ Figure 5.  Inhibitory effects of alpinumisoflavone (AIF) on VEGFA and alpha smooth muscle actin (alphaSMA) expression in the laser-induced choroidal neovascularisation (CNV) mouse model. Intravitreal injection of 25 mg/mL AIF was administered immediately after laser exposure. Equal amounts of protein from laserexposed mice eye tissue lysates were analysed for expression of the indicated proteins. Protein expression in CNV of laser-exposed eyes of mice was measured a week after laser exposure by western blot analysis. Data were analysed using one-way ANOVA followed by the Holm-Šídák post-hoc t-test (*p < 0.05 and **p < 0.01 vs. non-laser exposed group, ##p < 0.01 vs. only Laser exposed group) and the results are expressed as mean ± S.E. (n = 4–5). Uncropped blot images are presented in supplementary information (Supplementary Fig. 3). AIF reduced the expression level of VEGFA and alpha‑SMA in laser‑induced CNV mouse model. We performed a western blot assay to evaluate the effect of AIF on the expression of VEGFA and alpha-SMA in laser-induced CNV mice model. Seven days after laser photocoagulation, we removed the eyeballs of the experimental mice and extracted proteins. Western blot analysis of VEGFA and alpha-SMA was performed, with, GAPDH as an internal loading control. We found a decrease in the expression levels of VEGFA and alpha-SMA in the eyes treated with AIF compared to those in eyes treated without AIF (Fig. 5a; F(2,11) = 8.836, p = 0.005; Fig. 5b; F(2,11) = 8.108, p = 0.007). Morphological changes induced by laser photocoagulation. To investigate the morphological changes in laser-induced mice eyes, the mice were euthanised 7 days after laser photocoagulation. Then, immunohistochemical analyses was performed. In mice eye sagittal sections, the subretinal infiltrates and fibrosis were observed in laser exposed subretinal lesions. The expression levels of alpha-SMA was increased 7 days after laser photocoagulation but was reduced in AIF treated mice eye section (Fig. 6). AIF reduced the cleaved form of CRYAB and phosphorylated form of CRYAB (p‑CRYAB) expression in laser‑induced CNV mouse model. It is known that CRYAB is regulated angiogenesis by modulation of ­VEGF31. Therefore, we analysed the expression of CRYAB and p-CRYAB in laser-induced CNV mice model using western blot assay. Seven days after laser photocoagulation, we removed the eyeballs of the experimental mice and extracted proteins. Western blot analysis of the cleaved form of CRYAB and p-CRYAB was performed, with GAPDH as the internal loading control. We found a decrease in the expression levels of the cleaved form of CRYAB and p-CRYAB in the eyes of mice treated with AIF compared to those in eyes treated without AIF (Fig. 7a; F(2,6) = 52.690, p < 0.001; Fig. 7b; F(2,6) = 14.026, p = 0.005. CRYAB interacted with alpha‑SMA in the laser‑induced CNV mouse model. We performed Coimmunoprecipitation (Co-IP) assay to evaluate the association between CRYAB and alpha-SMA. A week after Scientific Reports | (2022) 12:14316 | https://doi.org/10.1038/s41598-022-18531-y 5 Vol.:(0123456789) www.nature.com/scientificreports/ Figure 6.  Expression of alpha smooth muscle actin (alpha-SMA) in laser-exposed mouse eye. Immunohistochemical staining of eyes from the non-laser induced mice and laser-induced CNV model with or without AIF treatment stained for DAPI (blue) and alpha-SMA (red). White asterisks indicate subretinal fibrosis and increased alpha-SMA expression level. Yellow arrow depicts retinal pigment epithelium (RPE) layer. The scale bar in each image is 100 μm. laser exposure, we removed the eyes of the experimental mice and extracted proteins. In Co-IP assays, input (whole cell lysate from mouse eye) was used as a control to determine whether IP was successful, and the results showed that CRYAB interacted with alpha-SMA in the laser-induced mouse model (Fig. 8). Discussion nAMD is a leading cause of blindness with symptoms of neovascularisation, haemorrhage, inflammation, and fibrosis in the subretinal region of the elderly population. Anti-VEGF signalling antibody therapeutics, such as bevacizumab, ranibizumab, and aflibercept, are prescribed as primary medications for nAMD therapy to inhibit ­neovascularisation4–7,32,33. However, the development of subretinal fibrosis after anti-angiogenesis treatment is one of the major concerns in the prognosis of patients with nAMD. In a study conducted by Daniel et al., Scientific Reports | Vol:.(1234567890) (2022) 12:14316 | https://doi.org/10.1038/s41598-022-18531-y 6 www.nature.com/scientificreports/ Figure 7.  Inhibitory effects of alpinumisoflavone (AIF) on crystallin alpha B (CRYAB) and phosphorylatedCRYAB (p-CRYAB) expression in laser-induced choroidal neovascularisation (CNV) model. Intravitreal injection of 25 mg/mL AIF was administered immediately after laser exposure. The tissue lysates from three animals were pooled as one sample and equal amounts of protein were analysed for determining expression of the indicated proteins. The cleaved form of (a) CRYAB and (b) p-CRYAB reduced by 25 mg/mL AIF treatment in the laser-induced CNV model. Experiments were performed in triplicate and data were analysed using one-way ANOVA followed by the Holm-Šídák post-hoc t-test (**p < 0.01 vs. non-laser exposed group, ##p < 0.01 vs. only Laser exposed group). The results are expressed as mean ± S.E. (n = 3). Each error bars represent standard deviation from triplicate reading of three pooled samples. Uncropped blot images are presented in supplementary information (Supplementary Fig. 4). Figure 8.  Interaction between crystallin alpha B (CRYAB) and alpha smooth muscle actin (alpha-SMA). Western blot analysis of proteins following the co-immunoprecipitation assay. Laser-exposed mice eye tissue lysates were co-immunoprecipitated with CRYAB. Alpha-SMA was successfully co-immunoprecipitated with CRYAB. Uncropped blot images are presented in supplementary information (Supplementary Fig. 5). approximately 45% of patients developed fibrotic scarring 2 years after anti-VEGF t­ reatment8. Thus, fibrotic scarring is a primary biomarker to predict loss of vision in patients with nAMD. In this study, we examined the effects of AIF on VEGF expression and fibrosis in AMD models. We demonstrated that AIF significantly reduced released VEGFA in ­H2O2 treated ARPE-19 cells. Thus, these findings suggest that AIF may inhibit chorioretinal neovascularisation by reducing VEGF induced by oxidative stress. Parallel to previous studies, we found that AIF has an inhibitory effect on oxidative stress and ­angiogenesis17,34. Furthermore, TCM induced the increase in VEGF expression in ARPE-19 cells. However, AIF co-treatment with TCM reduced VEGF expression. According to the previous reports, activated macrophages are related to AMD pathological ­process24,25. In addition, it has been reported that VEGF mediates angiogenesis and ­inflammation35. Activated immune cells, such as macrophages, are the key source of cytokines in the inflammatory responses, which were ameliorated by A ­ IF34. We demonstrated that AIF may inhibit VEGF production and Scientific Reports | (2022) 12:14316 | https://doi.org/10.1038/s41598-022-18531-y 7 Vol.:(0123456789) www.nature.com/scientificreports/ cellular response to activated macrophages. We take this as evidence that AIF may suppress the production of VEGF via the regulation of macrophage-induced pro-inflammatory mediators. The mRNA and protein levels of a fibrosis marker, alpha-SMA, and collagen I also decreased upon AIF treatment of ARPE-19 cells. These results encourage the examination of the potential protective role that AIF plays in the nAMD animal model. We demonstrated that AIF treatment significantly reduced laser-induced choroidal neovascularisation in the mouse model. Inhibitory activity of AIF was similar to that of bevacizumab (25 μg/eye). Furthermore, AIF also reduced VEGFA and alpha-SMA expression in the laser-induced CNV animal model. These results suggest that AIF may ameliorate choroidal neovascularisation development and reduce fibrosis related marker, alpha-SMA36 in the nAMD animal model. We identified that AIF modulates AMD pathophysiology via CRYAB function. We showed that CRYAB may act as a co-regulator of alpha-SMA, using Co-IP assay and gene–gene interaction analysis [genemania.org (Supplementary Fig. 1)]. According to previous s­ tudies31,37, CRYAB also interacts with and stabilises the VEGF structure, which plays an important role in the pathological process of AMD. These results suggest that CRYAB may bind to VEGF and alpha-SMA, and consequently act as a chaperone to enhance the function of target molecules in the subretinal fibrosis and CNV process. CRYAB has several phosphorylated sites, such as S19, S45, and S59. Increased VEGFA secretion and angiogenesis are associated with the upregulated S59-phosphorylated form of CRYAB (p-CRYAB)31. It can be inferred from our study that AIF may be used independently because they have an effect similar to that of bevacizumab. We demonstrated that the binding between alpha-SMA and CRYAB increased in the nAMD animal model. In addition, AIF treatment reduced the cleaved form of CRYAB and p-CRYAB in the laser-induced CNV model. However, the expression levels of total CRYAB and total p-CRYAB were not affected by AIF treatment. Therefore, we suggest that AIF may decrease the cleavage of CRYAB and the transcription of alpha-SMA, as mentioned above. CRYAB is a heat shock protein that binds to VEGFA and consequently inhibits degradation and escalates the release of the molecule. AIF treatment may increase the degradation of VEGF via the inhibition of chaperone function in the nAMD model. Overall, we can conclude that AIF reduces fibrosis scarring as well as CNV development via the regulation of transcription of alpha-SMA, expression of the cleaved form of CRYAB, and VEGF function in the nAMD model. Methods AIF preparation. AIF was extracted from the unripe fruits of Maclura tricuspidata and purified as per previ- ously reported p ­ rotocols38,39. Briefly, methanol extract made from 556.0 g of unripe fruits and 100% methanol was suspended in distilled water and partitioned successively with n-hexane, methylene chloride, ethyl acetate, and n-butanol. The methylene chloride fraction, subjected to a Sephadex LH-20 column eluted with methanol, yielded four sub-fractions (CTUM1–CTUM4). AIF was purified from CTUM3 using semi-preparative highperformance liquid chromatography (HPLC) with acetonitrile/distilled water (57:43). The AIF (> 95% pure, as measured via HPLC analysis using a PDA detector) was dissolved in dimethyl sulfoxide (DMSO, Sigma-Aldrich, St. Louis, MO, USA). Cell culture. ARPE-19 cells (ATCC, Manassas, VA, USA) were maintained in Dulbecco’s modified Eagle’s medium (DMEM, Gibco, Waltham, MA, USA), supplemented with 10% foetal bovine serum and antibiotic– antimycotic (100 units/mL, Gibco, Waltham, MA, USA), in a humidified incubator at 37 °C and 5% ­CO2. The media was changed thrice a week. For subculture, 1 mL of 0.5% trypsin–EDTA (Gibco, Waltham, MA, USA) was added and incubated at 37 °C for 3 min. Thereafter, 10 mL complete DMEM was added to harvest the cells via centrifugation at 3000 rpm for 3 min. The supernatant was then removed, and the pellet was resuspended in complete DMEM. Thereafter, the cells were seeded in 96-well plates at a density of 1 × ­104 cells/well. In vitro TCM and oxidative stress model. LPS-stimulated THP-1 cells were extensively used as a model of ­inflammation40. The human monocytic cell line THP-1 (Korean Cell Line Bank, Seoul, Korea, KCLB-40202) was cultured in RPMI-1640 (Hyclone, Logan, UT, USA) supplemented with 10% foetal bovine serum, 1% 2-mercaptoethanol (Gibco, Waltham, MA, USA), and antibiotic–antimycotic (100 units/mL, Gibco, Waltham, MA, USA), in a humidified incubator at 37 °C and 5% ­CO2. After reaching confluency, the cells were seeded at a density of 1 × ­106 cells/well in 12-well culture plates. For cell differentiation, THP-1 cells were treated with 200 ng/ml of PMA, Sigma-Aldrich, St. Louis, MO, USA) and incubated overnight at 37 °C and 5% C ­ O2. Then, the PMA-supplemented media was removed, and the differentiated macrophage-like cells were stimulated with 1 μg/ml of LPS (Sigma-Aldrich, St. Louis, MO, USA) in RPMI-1640. After 24 h, the TCM was harvested, and the cells and debris were removed by centrifugation for 5 min at 3500 rpm. ARPE-19 cells were seeded in 96-well plates at a density of 1 × ­104 cells/well. On the second day, the ARPE-19 cells were treated with 0.1% DMSO in RPMI 1640 complete media or AIF (0, 1, 5, or 10 μM) in TCM for 3 h. Thereafter, culture media were harvested as mentioned above, and dot blot analysis was performed to detect VEGFA expression in culture media. TCM untreated ARPE-19 cells was used as a control. The fluorescence intensity of alpha-SMA and VEGFA was measured by the immunofluorescence analysis as described in the “Methods” section below. Oxidative stress plays an important role in the pathogenesis of ­AMD26–30. According to previous ­studies29,30, we used H ­ 2O2 to induce VEGF production in ARPE-19 cells. Twenty-four hours after seeding, the ARPE-19 cells were treated with H ­ 2O2 or 5 μM AIF for 24 h and analysed via immunocytochemistry (ICC) as described in the “Methods” section below. Quantitative PCR (qPCR) was also performed as described in the “Methods” section below. After 24 h of H ­ 2O2 treatment, ARPE-19 cells were treated with 5 μM AIF for 24 h and analysed via dot blotting. In the above experiments, untreated cells were used as the control. Scientific Reports | Vol:.(1234567890) (2022) 12:14316 | https://doi.org/10.1038/s41598-022-18531-y 8 www.nature.com/scientificreports/ Dot blot analysis. Cell media stimulated with ARPE-19 were centrifuged at 3500 rpm for 5 min. The supernatant was blotted onto nitrocellulose membrane by vacuum and Bio-Dot Apparatus (Bio-rad) and subsequently blocked in TBS containing 5% skim milk for 1 h. The membrane was then incubated with anti-VEGFA antibody (Abcam, ab46154, 1:1000) for 3 h at room temperature and washed thrice with TBST (5 min each). The membrane was then incubated with goat anti-rabbit IgG-HRP (Cell Signaling, 7074S, 1:5000) secondary antibody for 1 h at room temperature, washed again, and finally visualised using ECL substrate (Millipore, Billerica, MA) and a FUSION Solo S chemiluminescence detection system (Vilber Lourmat, Collégien, France). Immunocytochemistry/immunofluorescence (ICC/IF). For immunocytochemistry, ARPE-19 cells were fixed in 4% paraformaldehyde for 20 min at room temperature and were permeabilised with 0.1% Triton X-100 in phosphate-buffered saline (PBS; Life Technologies, Carlsbad, CA, USA) for 15 min. Following blocking with PBS containing 5% goat serum and 0.1% Triton X-100 for 1 h at room temperature, fixed cells were incubated overnight at 4 °C with VEGFA (Santa Cruz Biotechnology, Santa Cruz, CA, USA, SC-7269, 1:300) in PBS containing 5% goat serum and 0.1% Triton X-100. Stained cells were washed with PBS containing 1% goat serum and 0.1% Tween 20. Then, the cells were incubated for 2 h at room temperature with the goat anti-rabbit IgG labelled with Alexa Fluor 488 (Abcam, ab150077, 1:500) or Goat Anti-Mouse IgG H&L (Alexa F ­ luor® 568) (Abcam, ab175473, 1:500) in PBS containing 5% goat serum in 0.1% Triton X-100 in the dark. The cells were then stained with 4′,6-diamidino-2-phenylindole (DAPI, diluted to 300 ng/mL in PBS) for 10 min at room temperature in the dark. Cells were washed three times in PBS for 5 min each in the dark. Samples were stored in 0.02% (w/v) sodium azide in PBS. Thereafter, fluorescent images were captured with a Zeiss Axio Imager A2 microscope (Carl Zeiss, Oberkochen, Germany). For immunofluorescence analysis, ARPE-19 cells were stained with alpha-SMA (Abcam, Cambridge, UK, ab5694, 1:300) and VEGF (Santa Cruz Biotechnology, Santa Cruz, CA, USA, SC-7269, 1:300) in the same way as above. Then, the fluorescence intensity was subsequently measured using a FlexStation 3 Multi-Mode Microplate Reader (Molecular Devices, LLC, Sunnyvale, CA, USA) as follows: DAPI, excitation wavelength of 340 nm and emission wavelength of 488 nm or alpha-SMA, excitation wavelength of 495 nm and emission wavelength of 519 nm or VEGFA, excitation wavelength of 578 nm and emission wavelength of 603 nm. Quantitative real‑time PCR (qPCR). RNA was extracted from ARPE-19 cells using QIAGEN RNA kit (QIAGEN, Hilden, Germany), and cDNA was synthesised from 1 μg total RNA using the High-Capacity cDNA Reverse Transcription Kit (Applied Biosystems, Foster City, CA, USA). Amplification reactions were performed with 12.5 μL 2 × SYBR Green PCR master mix (Applied Biosystems), 1 μg cDNA, and forward and reverse primers (100 μM each) using StepOne Plus Real-Time PCR System (Applied Biosystems). Cycling parameters were as follows: 50 °C for 2 min and 95 °C for 10 min; 1 cycle at 95 °C for 15 s and 40 cycles at 60 °C for 2 min, after one initial step at 95 °C for 30 s and a final step at 55 °C for 30 s. The primers used were as follows: alphaSMA, forward 5′-AAA​AGA​CAG​CTA​CCT​TGG​GTGA-3′ and reverse 5′-GCC​ATG​TTC​TAT​CGG​GTA​CTTC3′; N-Cadherin, forward 5′-TCA​GGC​GTC​TGT​AGA​GGC​TT-3′ and reverse 5′-ATG​CAC​ATC​CTT​CGA​TAA​ GACTG-3′; Collagen I, forward 5′-TTG​TGC​GAT​GAC​GTG​ATC​TGT-3′ and reverse 5′-TTG​GTC​GGT​GGG​ TGA​CTC​TG-3′; GAPDH, forward 5′-TGT​CAA​GCT​CAT​TTC​CTG​GTA​TGA​-3′ and reverse 5′-TCT​TAC​TCC​ TTG​GAG​GCC​ATG​TAG​-3′. In vivo CNV model and drug treatment. Male wild-type C57BL/6N mice aged 8 weeks were randomly assigned to standard cages with 4–5 animals per cage (n = 5–8 for each group) and maintained under standard housing conditions in a 12 h light/dark cycle. For all procedures, animals were anaesthetised via intraperitoneal injection with ketamine (100 mg/kg body weight) and xylazine (10 mg/kg body weight). Pupils were dilated with a combination of 0.5% tropicamide and 0.5% phenylephrine (Mydrin-P; Santen, Osaka, Japan). Laser photocoagulation were performed in both eyes of each animal at the 3, 6, 9, and 12 o’clock positions of the retina, at a distance of 1–2 optic disc diameters surrounding the optic nerve, avoiding blood vessels. Laser spots were created with a spot diameter of 45 μm using the 78 diopters lens (VOLK, Mentor, OH, USA), 350 mW power, and 100 ms pulse duration using a laser indirect ophthalmoscope (­ OcuLight® GL (Green 532 nm Laser), IRIDEX, Mountain View, CA, USA)41. Before intravitreal injection, a small amount of vitreous fluid was removed after puncture using a 30-g needle, being careful not to touch the lens on the limbus. Then, mice were intravitreally injected at the same puncture site with a 32-gauge needle attached to a 5 μL Hamilton microsyringe (Hamilton, Reno, NV, USA) as follows: 1 μL DMSO or AIF (25 μg in 1 μL DMSO) or 1 μL bevacizumab (Avastin, 25 mg/mL; Genentech, San Francisco, CA, USA). Fluorescein and Isolectin B4 staining of CNV lesions. Isolectin B4 staining was performed accord- ing to previously published reports but with a minor ­modification42. Mice were euthanised 7 days after laser photocoagulation. About 30 min before enucleation, 2.5% fluorescein sodium (Novartis, Basel, Switzerland) 0.5 mL was injected intraperitoneally. Residual fat, muscle, episcleral membrane, or optic nerve tissue was gently removed. The cornea and anterior sclera were dissected through an incision just anterior to the equator using microdissection scissors, and the lens, iris, and vitreous and neurosensory retina were removed. The planarization of the posterior scleral cup by making five meridian incisions starting at the equator and ending in the middle of the sclera approximately 1 mm from the centre of the optic nerve head did not damage the peripapillary sclera. Only RPE, choroid, and sclera were separated and placed in a 96 well plate. The samples were immediately fixed with 4% paraformaldehyde (Sigma-Aldrich, St. Louis, MO, USA) in PBS for 1 h at room temperature. For flat-mounts, posterior eye cups consisting of the RPE, choroid, and sclera were permeabilised with 0.1% Triton X-100 (Thermo Fisher Scientific, Waltham, MA, USA) in PBS for 1 h at room temperature. The CNV lesions Scientific Reports | (2022) 12:14316 | https://doi.org/10.1038/s41598-022-18531-y 9 Vol.:(0123456789) www.nature.com/scientificreports/ were stained with Alexa Fluor 594-conjugated Griffonia simplicifolia isolectin B4 (1:100 dilution; Invitrogen, Carlsbad, CA, USA) and fluorescein at room temperature overnight. After three washes with PBS (15 min each), posterior eye cups were flat-mounted onto slides (Thermo Scientific) with the scleral side down in SlowFade anti-fade mounting medium (Life Technologies). Fluorescent images were captured using a Zeiss Axio Imager A2 microscope (Carl Zeiss). Immunohistochemical analyses. Mice were euthanised 7 days after laser photocoagulation. The eyes were post-fixed overnight with 4% PFA in PBS at 4 °C and then coronally cut with a Leica CM1850 microtome (15 µm thick sections). The sections were then permeabilised in PBS with 0.3% Triton X-100 and 0.3% hydrogen peroxide and blocked in 5% bovine serum albumin (BSA, with 1% goat serum) for 1 h at room temperature. The sections were incubated with primary antibodies diluted in 5% BSA at 4 °C overnight using rabbit alpha-SMA (Abcam, ab5694, 1:200). After rinsing three times in PBS, the slices were incubated with the corresponding Alexa Fluor-conjugated secondary antibodies diluted in 5% BSA for 2 h at RT and finally stained for 20 min with DAPI (300 nM in 5% BSA, Sigma-Aldrich). The sections were then mounted onto glass slides (Matsunami, Osaka, Japan) with mounting medium (Vector Laboratories, Inc., San Francisco, CA, USA). For each section, images were taken under a 5× objective using a Zeiss Axio Imager A2 microscope (Carl Zeiss). Western blot analysis. Mice retina, RPE, and choroid were isolated via sonication in lysis buffer (iNtRON Biotechnology, Seongnam, Korea) and centrifuged at 13,000 rpm for 25 min at 4 °C. The supernatant was obtained as total protein extracts. ARPE-19 cells were homogenised with lysis buffer (iNtRON Biotechnology) and centrifuged at 13,000 rpm for 25 min at 4 °C. The supernatant was obtained as total protein extracts. An equal amount of total protein was resolved on 12% sodium dodecyl sulfate–polyacrylamide gel followed by gel electrophoresis. The transferred PVDF membranes were incubated overnight at 4 °C with alpha-SMA (Abcam, ab5694, 1:1000), VEGFA (Abcam, ab46154, 1:1000) CRYAB (Abcam, ab13496, 1:2500), phospho-CRYAB (Ser59; Invitrogen, PA1-012, 1:2500), and GAPDH (Cell Signaling Technology, 2118S, 1:5000) antibodies. Thereafter, blots were incubated with corresponding conjugated goat anti-rabbit (Cell Signaling, 7074S, 1:5000) or horse anti-mouse IgG-HRP (Cell Signaling, 7076S, 1:5000) secondary antibodies. Immunoreactive proteins were detected with ECL substrate (Millipore) and visualised using a FUSION Solo S chemiluminescence detection system (Vilber Lourmat, Collégien, France). Co‑immunoprecipitation (Co‑IP) assay. Co-IP assays were performed using a Pierce Classic Magnetic IP/Co-IP Kit (Thermo Scientific) according to the manufacturer’s instructions. Briefly, tissue lysate containing 500 μg total protein (quantified by bradford assay) was incubated with 2 μg CRYAB antibody for IP overnight at 4 °C. Thereafter, the antigen/antibody complex was incubated with 25 μL Pierce Protein A/G magnetic beads for 1 h at room temperature. The beads were then washed twice with IP Lysis/Wash Buffer and once with distilled water, and the antigen/antibody complex was subsequently eluted from the beads by heating at 100 ℃ for 5 min. Lastly, CRYAB was measured via western blotting. Statistical analysis. The data were analysed with Mann–Whitney U test using the Statistics Kingdom web calculator (https://​www.​stats​kingd​om.​com) and one-way analysis of variance (ANOVA) followed by HolmŠídák post-hoc t-test with SigmaPlot 14 software (Systat Software, San Jose, CA, USA). The results are presented as mean ± standard error (S.E.). Ethical approval. Male wild-type C57BL/6N mice aged 8 weeks were handled in accordance with the Association for Research in Vision and Ophthalmology’s (ARVO) statement on the Use of Animals in Ophthalmic and Vision Research. This study was reviewed, and the protocol was approved by the Institutional Human Experimentation Committee Review Board of Ulsan University Hospital, Ulsan, Republic of Korea (NON2020004) and Chungbuk National University, Cheongju, Republic of Korea (CBNUR-1453-20). All the animal experiments followed the ethical guidelines of ARRIVE (https://​arriv​eguid​elines.​org). Data availability The datasets used and/or analysed during the current study are available from the corresponding authors on reasonable request. Received: 23 February 2022; Accepted: 16 August 2022 References 1. Evans, J. R. Risk factors for age-related macular degeneration. Prog. Retin. Eye Res. 20, 227–253. https://​doi.​org/​10.​1016/​s1350-​ 9462(00)​00023-9 (2001). 2. Javadzadeh, A. et al. Plasma oxidized LDL and thiol-containing molecules in patients with exudative age-related macular degeneration. Mol. Vis. 16, 2578–2584 (2010). 3. Wang, J. J. et al. Ten-year incidence and progression of age-related maculopathy: The blue Mountains Eye Study. Ophthalmology 114, 92–98. https://​doi.​org/​10.​1016/j.​ophtha.​2006.​07.​017 (2007). 4. Heier, J. S. et al. Ranibizumab for treatment of neovascular age-related macular degeneration: A phase I/II multicenter, controlled, multidose study. Ophthalmology 113(633), e631-634. https://​doi.​org/​10.​1016/j.​ophtha.​2005.​10.​052 (2006). 5. Ho, A. C. et al. Twenty-four-month efficacy and safety of 0.5 mg or 2.0 mg ranibizumab in patients with subfoveal neovascular age-related macular degeneration. Ophthalmology 121, 2181–2192. https://​doi.​org/​10.​1016/j.​ophtha.​2014.​05.​009 (2014). Scientific Reports | Vol:.(1234567890) (2022) 12:14316 | https://doi.org/10.1038/s41598-022-18531-y 10 www.nature.com/scientificreports/ 6. Heier, J. S. et al. Intravitreal aflibercept (VEGF trap-eye) in wet age-related macular degeneration. Ophthalmology 119, 2537–2548. https://​doi.​org/​10.​1016/j.​ophtha.​2012.​09.​006 (2012). 7. Rosenfeld, P. J. et al. Ranibizumab for neovascular age-related macular degeneration. N. Engl. J. Med. 355, 1419–1431. https://​doi.​ org/​10.​1056/​NEJMo​a0544​81 (2006). 8. Daniel, E. et al. Risk of scar in the comparison of age-related macular degeneration treatments trials. Ophthalmology 121, 656–666. https://​doi.​org/​10.​1016/j.​ophtha.​2013.​10.​019 (2014). 9. Lambert, N. G. et al. Risk factors and biomarkers of age-related macular degeneration. Prog. Retin. Eye Res. 54, 64–102. https://​ doi.​org/​10.​1016/j.​prete​yeres.​2016.​04.​003 (2016). 10. Kliffen, M., Sharma, H. S., Mooy, C. M., Kerkvliet, S. & de Jong, P. T. Increased expression of angiogenic growth factors in agerelated maculopathy. Br. J. Ophthalmol. 81, 154–162. https://​doi.​org/​10.​1136/​bjo.​81.2.​154 (1997). 11. Schwesinger, C. et al. Intrachoroidal neovascularization in transgenic mice overexpressing vascular endothelial growth factor in the retinal pigment epithelium. Am. J. Pathol. 158, 1161–1172. https://​doi.​org/​10.​1016/​S0002-​9440(10)​64063-1 (2001). 12. Tamiya, S., Liu, L. & Kaplan, H. J. Epithelial-mesenchymal transition and proliferation of retinal pigment epithelial cells initiated upon loss of cell-cell contact. Investig. Ophthalmol. Vis. Sci. 51, 2755–2763. https://​doi.​org/​10.​1167/​iovs.​09-​4725 (2010). 13. Namkoong, S. et al. Alpinumisoflavone induces apoptosis and suppresses extracellular signal-regulated kinases/mitogen activated protein kinase and nuclear factor-κB pathways in lung tumor cells. Biol. Pharm. Bull. 34, 203–208. https://​doi.​org/​10.​1248/​bpb.​ 34.​203 (2011). 14. Gao, M., Chang, Y., Wang, X., Ban, C. & Zhang, F. Reduction of COX-2 through modulating miR-124/SPHK1 axis contributes to the antimetastatic effect of alpinumisoflavone in melanoma. Am. J. Transl. Res. 9, 986–998 (2017). 15. Kingsford-Adaboh, R. et al. Invariom structure refinement, electrostatic potential and toxicity of 4-O-methylalpinumisoflavone, O, O-dimethylalpinumisoflavone and 5-O-methyl-4-O-(3-methylbut-2-en-1-yl)alpinumisoflavone. Acta Crystallogr. B 62, 843–849. https://​doi.​org/​10.​1107/​s0108​76810​60196​16 (2006). 16. Han, X. H. et al. Monoamine oxidase inhibitory constituents from the fruits of Cudrania tricuspidata. Arch. Pharm. Res. 28, 1324–1327. https://​doi.​org/​10.​1007/​bf029​77895 (2005). 17. Li, P. et al. Alpinumisoflavone attenuates lipopolysaccharide-induced acute lung injury by regulating the effects of anti-oxidation and anti-inflammation both in vitro and in vivo. RSC Adv. 8, 31515–31528 (2018). 18. Wang, T., Jiang, Y., Chu, L., Wu, T. & You, J. Alpinumisoflavone suppresses tumour growth and metastasis of clear-cell renal cell carcinoma. Am. J. Cancer Res. 7, 999–1015 (2017). 19. Liu, Y. et al. Methylalpinumisoflavone inhibits hypoxia-inducible factor-1 (HIF-1) activation by simultaneously targeting multiple pathways. J. Biol. Chem. 284, 5859–5868. https://​doi.​org/​10.​1074/​jbc.​M8067​44200 (2009). 20. Zhang, Y. et al. Flavones hydroxylated at 5, 7, 3′ and 4′ ameliorate skin fibrosis via inhibiting activin receptor-like kinase 5 kinase activity. Cell Death Dis. 10, 124. https://​doi.​org/​10.​1038/​s41419-​019-​1333-7 (2019). 21. Hu, Q. et al. In vitro anti-fibrotic activities of herbal compounds and herbs. Nephrol. Dial. Transplant. 24, 3033–3041. https://​doi.​ org/​10.​1093/​ndt/​gfp245 (2009). 22. Dunn, K. C., Aotaki-Keen, A. E., Putkey, F. R. & Hjelmeland, L. M. ARPE-19, a human retinal pigment epithelial cell line with differentiated properties. Exp. Eye Res. 62, 155–169. https://​doi.​org/​10.​1006/​exer.​1996.​0020 (1996). 23. Yang, Y. et al. Macrophage polarization in experimental and clinical choroidal neovascularization. Sci. Rep. 6, 30933. https://​doi.​ org/​10.​1038/​srep3​0933 (2016). 24. Cao, X. et al. Macrophage polarization in the maculae of age-related macular degeneration: A pilot study. Pathol. Int. 61, 528–535. https://​doi.​org/​10.​1111/j.​1440-​1827.​2011.​02695.x (2011). 25. Oh, H. et al. The potential angiogenic role of macrophages in the formation of choroidal neovascular membranes. Investig. Ophthalmol. Vis. Sci. 40, 1891–1898 (1999). 26. Cho, M., Hunt, T. K. & Hussain, M. Z. Hydrogen peroxide stimulates macrophage vascular endothelial growth factor release. Am. J. Physiol. Heart Circ. Physiol. 280, H2357–H2363. https://​doi.​org/​10.​1152/​ajphe​art.​2001.​280.5.​H2357 (2001). 27. Thurman, J. M. et al. Oxidative stress renders retinal pigment epithelial cells susceptible to complement-mediated injury. J. Biol. Chem. 284, 16939–16947. https://​doi.​org/​10.​1074/​jbc.​M8081​66200 (2009). 28. Dinc, E., Ayaz, L. & Kurt, A. H. Protective effect of combined caffeic acid phenethyl ester and bevacizumab against hydrogen peroxide-induced oxidative stress in human RPE cells. Curr. Eye Res. 42, 1659–1666. https://d ​ oi.o ​ rg/1​ 0.1​ 080/0​ 27136​ 83.2​ 017.1​ 3680​ 85 (2017). 29. Beatty, S., Koh, H., Phil, M., Henson, D. & Boulton, M. The role of oxidative stress in the pathogenesis of age-related macular degeneration. Surv. Ophthalmol. 45, 115–134. https://​doi.​org/​10.​1016/​s0039-​6257(00)​00140-5 (2000). 30. Byeon, S. H. et al. Vascular endothelial growth factor as an autocrine survival factor for retinal pigment epithelial cells under oxidative stress via the VEGF-R2/PI3K/Akt. Investig. Ophthalmol. Vis. Sci. 51, 1190–1197. https://​doi.​org/​10.​1167/​iovs.​09-​4144 (2010). 31. Kase, S. et al. AlphaB-crystallin regulation of angiogenesis by modulation of VEGF. Blood 115, 3398–3406. https://​doi.​org/​10.​ 1182/​blood-​2009-​01-​197095 (2010). 32. Malik, D. et al. Safety profiles of anti-VEGF drugs: Bevacizumab, ranibizumab, aflibercept and ziv-aflibercept on human retinal pigment epithelium cells in culture. Br. J. Ophthalmol. 98(Suppl 1), i11–i16. https://​doi.​org/​10.​1136/​bjoph​thalm​ol-​2014-​305302 (2014). 33. Kim, L. A. & D’Amore, P. A. A brief history of anti-VEGF for the treatment of ocular angiogenesis. Am. J. Pathol. 181, 376–379. https://​doi.​org/​10.​1016/j.​ajpath.​2012.​06.​006 (2012). 34. Alos, H. C., Billones, J. B., Vasquez, R. D. & Castillo, A. L. Antiangiogenesis potential of alpinumisoflavone as an inhibitor of matrix metalloproteinase-9 (MMP-9) and vascular endothelial growth factor receptor-2 (VEGFR-2). Curr. Enzym. Inhib. 15, 159–178 (2020). 35. Shaik-Dasthagirisaheb, Y. B. et al. Vascular endothelial growth factor (VEGF), mast cells and inflammation. Int. J. Immunopathol. Pharmacol. 26, 327–335. https://​doi.​org/​10.​1177/​03946​32013​02600​206 (2013). 36. Winter, K. et al. Alpha smooth muscle actin (αSMA) immunohistochemistry use in the differentiation of pancreatic cancer from chronic pancreatitis. J. Clin. Med. https://​doi.​org/​10.​3390/​jcm10​245804 (2021). 37. Huang, X. Y. et al. αB-crystallin complexes with 14–3-3ζ to induce epithelial-mesenchymal transition and resistance to sorafenib in hepatocellular carcinoma. Hepatology 57, 2235–2247. https://​doi.​org/​10.​1002/​hep.​26255 (2013). 38. Jo, Y. H. et al. Comparison of pancreatic lipase inhibitory isoflavonoids from unripe and ripe fruits of Cudrania tricuspidata. PLoS ONE 12, e0172069. https://​doi.​org/​10.​1371/​journ​al.​pone.​01720​69 (2017). 39. Jo, M. J. et al. Physicochemical, pharmacokinetic, and toxicity evaluation of methoxy poly(ethylene glycol)-b-poly(d, l-lactide) polymeric micelles encapsulating alpinumisoflavone extracted from unripe Cudrania tricuspidata fruit. Pharmaceutics https://​ doi.​org/​10.​3390/​pharm​aceut​ics11​080366 (2019). 40. Chanput, W., Mes, J. J. & Wichers, H. J. THP-1 cell line: An in vitro cell model for immune modulation approach. Int. Immunopharmacol. 23, 37–45. https://​doi.​org/​10.​1016/j.​intimp.​2014.​08.​002 (2014). 41. Weinberger, D. et al. Mobile laser indirect ophthalmoscope: For the induction of choroidal neovascularization in a mouse model. Curr. Eye Res. 42, 1545–1551. https://​doi.​org/​10.​1080/​02713​683.​2017.​13491​54 (2017). 42. Léger, H., Santana, E., Beltran, W. A. & Luca, F. C. Preparation of mouse retinal cryo-sections for immunohistochemistry. J. Vis. Exp. https://​doi.​org/​10.​3791/​59683 (2019). Scientific Reports | (2022) 12:14316 | https://doi.org/10.1038/s41598-022-18531-y 11 Vol.:(0123456789) www.nature.com/scientificreports/ Author contributions Conceptualization, J.K.M. and J.Y.; methodology, M.K.L., K.J.H., J.K.M. and J.Y.; investigation, E.Y., Y.S., Y.H.J., S.W.Y., M.K.L. and J.Y.; data curation, J.Y.; formal analysis, E.Y. and Y.S.; writing—original draft preparation, E.Y. and Y.S.; writing—review and editing, S.M.G.; visualization, E.Y. and Y.S.; funding acquisition, J.K.M. and J.Y.; supervision, J.K.M. and J.Y.; project administration, J.K.M. and J.Y. All authors have read and agreed to the publication of the current version of the manuscript. Funding This research was supported by "Regional Innovation Strategy (RIS)" through the National Research Foundation of Korea (NRF) funded by the Ministry of Education (MOE) (2021RIS-001), the National Research Foundation of Korea (NRF) grant funded by the Korea government (MSIT) (No. MRC, 2017R1A5A2015541), and the Ministry of Food and Drug Safety (22214MFDS252). This research was also supported by Ulsan University Hospital Research Grant (UUH-2020-07). Competing interests The authors declare no competing interests. Additional information Supplementary Information The online version contains supplementary material available at https://​doi.​org/​ 10.​1038/​s41598-​022-​18531-y. Correspondence and requests for materials should be addressed to J.K.M. or J.Y. Reprints and permissions information is available at www.nature.com/reprints. Publisher’s note Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations. Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://​creat​iveco​mmons.​org/​licen​ses/​by/4.​0/. © The Author(s) 2022 Scientific Reports | Vol:.(1234567890) (2022) 12:14316 | https://doi.org/10.1038/s41598-022-18531-y 12
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Leduc's Artificial Plants and Cells
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7,426
.. ' ... But in­ stead of utilizing either an exceedingly fine metal wire of relatively low specific resistance and temperature coefficient, as does the barretter, or a large radiating or absorbing surface in proportion to its mass as does the bolometer, the carborundum detector employs a constricted current path lying along the edge of the crystal in contact with the oppositely-disposed sur­ faces of the conductor plugs. It is well known that the flat side of carborun̚ .• m is a very poor conductor and in order to obtain good electrical contact, the sharp edges of the carborundum fragment must be clamped between the opposed sur­ faces of the plug ends of the detector, when the actual contact is rmited to an exceedingly small area-not more than Olle millionth of an inch and probably less. The seed surrounds itself with a membrane of cop­ per ferrocyanide which is permeable to water and to certain ions, but is impermeable to sugar. This semi­ permeability produces a high osmotic pressure in the interior of the artificial seed, resulting in the absorp­ tion of matter from the surrounding medium and thus in the growth of the whole structure. If the liquid be spread on a glass plate, the growth takes place in a horizontal plane. In a deep vessel, on the other hand, the plant form' grows simultaneously in a hori. zontal and a vertical'. direction,' forming stems which on arriving on the upper surface of th 1 liquid, spread out in flat leaves resembling those of a water plant. In common with the Fessenden hot-wire barretter and responders of the bolometric type, the action of the new Dunwoody detector is purely thermal. But in­ stead of utilizing either an exceedingly fine metal wire of relatively low specific resistance and temperature coefficient, as does the barretter, or a large radiating or absorbing surface in proportion to its mass as does the bolometer, the carborundum detector employs a constricted current path lying along the edge of the crystal in contact with the oppositely-disposed sur­ faces of the conductor plugs. The new carborundum detector is so designed that it can be inserted in circuit with a De Forest receptor instead of the detector formerly used; in other words, the carborundum detector is made interchangeable with the electrolytic detector, which it has superseded. BY A. FREDERICK COLLINS. Leduc, of Nantes, has fouIld the vHal functions in animal and vegetable cells to be controlled exclusively by the physical laws of diffusion (osmosis) and cohesion (molecular attraction) . On the basis of these phe­ nomena he has even succeeded in artificially producing objects which, not only in appearance but in behavior, closely resemble natural cells, growing, absorbing food, lJ-nd propagating themselves in exactly the same way. The botanist might be somewhat embarrassed when asked to incorporate in his familiar system of clatlses, orders, and families.,the forms .. i1lustrated .in IFigs. 1 to 4. Still he would hardly have any doubt of their genuineness, their whole aspect being typical of repre­ sentatives of the vegetable kingdom, especially of cer­ tain water plants. While Prof. Lehmann's recent researches on ap­ parently living crystals have shown that certain bodies, mineral in outward appearance, behave like living organisms of the lowest type (bacteria), Prof. Leduc, of Nantes, has fouIld the vHal functions in animal and vegetable cells to be controlled exclusively by the physical laws of diffusion (osmosis) and cohesion (molecular attraction) . On the basis of these phe­ nomena he has even succeeded in artificially producing objects which, not only in appearance but in behavior, closely resemble natural cells, growing, absorbing food, lJ-nd propagating themselves in exactly the same way. tector, Pickard has brought out' one using silicon as the sensitive medium. Silicon is a non-metallic ele­ ment, prepared as a dull-brown amorphous powder, as shining metallic scales or as dark steel-gray granules, sometimes showing crystallization. Any one of these may be used as a detector, and in any case it is pressed into good electrical contact between two conducting plugs as in the ordinary coherer. Notwithstanding this very considerable difference in the sensitiveness of the electrolytic and carborundum detectors when measured in the C. G. S. system of units, in the a.ctual practice of wireless telegraphy the difference in' receptiveness is barely perceptible over similar distances. In the first experiments with car­ borundum as an electric wave .detector, it was found that its sensibility to the electric oscillations set up in the circuit of which it was a part, was a maximum when a certain critical potential prevailed in the local circuit of which it also formed a part. Different from the coherer, this latest "thermo-elec­ tric regenerative detector" converts the energy of the oscillation set up in the receiving. .. ' ... When placed in such a receiving circuit, the mani­ festation is greatest when the potential impressed upon the detector is between 1.0 and 1.2 volts. A single artificial seed one millimeter in diameter can thus produce 15 to "20 vertical stems which some­ times reach a height of 25 to 30 centimeters, being either simple or branched, frequently carrying lateral lea yes or twigs and terminals shaped like spheres, mushrooms, ears, spires, etc., according to the com­ pOSition of the culture liquid. In other tests, the conductor plugs supporting the carborundum crystals were heated by a spirit lamp, when the resistance of the detector was observed to decrease greatly, but on cooling again it assumed its former resistivity, which is of the order of a megohm. The crystals of carborundum employed in the Dun­ woody detector are microscopically selected and only those having the sharpest edges are chosen, since these have been found to give the best result. The fragment of ciuborundum is placed between a spring and an adjustable screw plug, and by varying the These experiments thus prove that the functions formerly considered as being characteristic of the pro­ cess of life are due to and controlled by purely physi­ cal forces. In fact, the forms in question obviously receive their food by intussusception or internal ab­ sorption . like living beings, whereas crystals, as is well known, increase by external accretion. Further­ more, the plant forms are really organized, possessing all those organs (stems, leaves, and terminal parts) which are characteristic of plants. As finally the sub­ stance used in building up these artificial plants, viz., copper sulphate, rises in stems up to 30 centimeters in he"ight (with a diameter of one millimeter) they are necessarily provided with an apparatus of circula- THE DETECTOR APPLIED TO A DE FOREST RECEPTOR. driven causes a new screw to drop out of a magazine and fall in line with the bit and also allows a screw to fall from the hopper into the magazine. The use of the intermediate magazine was found necessary, as the operation of the machine is so rapid that too much time would be wasted in waiting for it to drop from the hopper. • In tbe C. G. S. system tbe erg is the unit of wurk and of energy, being the work done in moving a body through a distance of one centimeter against the force of one dyne, or the kinetic force of two grammes moving at the rate of one centimeter per second. . BY A. FREDERICK COLLINS. Since the advent of the Dunwoody carborundum de- Since the advent of the Dunwoody carbor A novel detector for determining the presence of electlric waves, has just been brought out by General H. H. C. Dunwoody, and has been found sufficiently sensitive and trustworthy to be used for commercial wireless telegraphic work. We are no doubt at present on the eve of great revo­ lutions in our scientific views; the phenomena of radio­ activity have shaken the belief in the immutability of the atom and even the principle of the preservation of matter, at least in its familiar form. Nor does the distinction of three strictly separated states of aggre­ gation stand the test of recent investigation; transi­ tions are found to exist between the different states, and we are warranted in presuming that between the material and the immaterial (the luminous ether) there are likewise numberless intermediary states. Finally there have been discovered transitional stages between inert matter and living beings, from which many interesting conclusions in regard to the nature of life can be drawn. THE NEW DUNWOODY CARBORUNDUM DETECTOR INSERTED IN A RECEPTOR. The device in question consis of a minute mass or fragment of carborundum-an artificial compound made of carbon and silicon in the electric furnace­ held in place between two metallic terminals or con­ ductor plugs, usually formed of copper or brass. This detector has recently been made the subject of exhaustive tests by Mr. G. W. Pickard, who has found that it is somewhat less sensitive than the magnetic detector of Marconi, which in turn follows the electro­ lytic detector of Fessenden; that is to say, while it requires from 350 to 400 micro-ergs (1 micro-erg being 1/1000 of an erg*) to operate the electrolytic detector, and from 400 to 500 micro-ergs to impress a magnetic detector, it requires between 9,000 and 14,000 micro­ ergs to carry the conductivity of a carborundum de­ tector so that it will produce an audible tone in a telephone receiver, with about the same amount of energy required by a microphone detector. THE NEW DUNWOODY CARBORUNDUM DETECTOR INSERTED IN A RECEPTOR. While Prof. Lehmann's recent researches on ap­ parently living crystals have shown that certain bodies, mineral in outward appearance, behave like living organisms of the lowest type (bacteria), Prof. Scientific American MARCH 16, 1907. 234 234 .. ' ... Various curves have been plotted showing the re­ sistance variation against the differe.nce of potential across the conductor plugs of the detector, and in one of these it was demonstrated that the conductive charge occurred most rapidly between 1.0 and 1.1 volts. The conductance of the detector at this potential was about ”50 microhms, or 0.4000 ohm, and a variation of 0.01 volt at the above potential value will produce a change in condtlctivity of about 10 microhms, or -! per cent. A machine for applying screws at the rate of fifty a minute, if necessary, has recently been placed on the market and consists of a hopper connected by a vertical flexible shaft and tube to the driving mechanism below. The withdrawal of the bit from each screw as it is Below are given some details concerning the arti­ ficial seed and the medium in which it is immersed for germination. A seed one to two millimeters in diam­ eter, consisting of two parts of saccharose (cane sugar) and one part of copper sulphate, is immersed ill an aqueous solution containing two to four per cent o.f potassium ferro cyanide, one to ten per cent of sodium chloride or some other salt, and one to four per cent of gelatine. In this solution, the seed germinates in a few days or a few hours according to temperatute; under favorable conditions the germinating process can even be shown as a lecture experiment in a few minutes. THE DETECTOR APPLIED TO A DE FOREST RECEPTOR. p It is well known that the flat side of carborun̚ .• m is a very poor conductor and in order to obtain good electrical contact, the sharp edges of the carborundum fragment must be clamped between the opposed sur­ faces of the plug ends of the detector, when the actual contact is rmited to an exceedingly small area-not more than Olle millionth of an inch and probably less. In common with the Fessenden hot-wire barretter and responders of the bolometric type, the action of the new Dunwoody detector is purely thermal. BY A. FREDERICK COLLINS. aerial, into heat at the junction of the silicon and the metal fOl:ming the conductor plugs by virtue of the high resistance of the former and the low resistance of the latter. The botanist might be somewhat embarrassed when asked to incorporate in his familiar system of clatlses, orders, and families.,the forms .. i1lustrated .in IFigs. 1 to 4. Still he would hardly have any doubt of their genuineness, their whole aspect being typical of repre­ sentatives of the vegetable kingdom, especially of cer­ tain water plants. The amount of heat developed by the high thermo­ electromotive force, and the consequent temperature rise, is proportional to the square of the resistance, according to the well-known law of Joule. The de­ tector gets its name as indicated above from the fact that this thermal energy is converted or regenerated into a direct electric current, the detector performing the same function as all others that have been de­ vised, namely, that of a very delicate relay. In this respect it resembles the electrolytic detector when in action. For this reason a potentiometer or variable resistance is used in shunt with the detector. As carborundum is obtained in the form of crystalline masses, it has, in consequence, a very high resistance where the current flowing in the internal or dry cell circuit is small, but as the strength of the current is increased the resistance drops very rapidly. Nevertheless, they are not living beings of any sort, but artificial bodies formed in the laboratory of the chem­ ist. While their very aspect is certain to inspire in­ terest, it is obviously far more interesting to observe \hem in the making, to watch how from an artificial seed a shoot springs and develops (at a rate readily· controlled by the experimenter) into stems, leaves, buds, twigs; ears, and blossoms, and after some time dies like a real plant. The birth and death of a plant can thus be artificially reproduced within the space of a few hours. .. ' ... LEDUC'S ARTIFICIAL PLANTS AND CELLS. BY DR. ALFRED GRA.DENWITZ. pressure of the spring by means of a screw the point of maximum sensitiveness can easily be obtained. on which he believes the originals were constructed. Some of these are shown in the accompanying illustra­ tions. None was found in the ruins. The manner in which these writing instruments were used is also shown in one of the engravings herewith. pressure of the spring by means of a screw the point of maximum sensitiveness can easily be obtained. A strong reaction against the some'Nhat childish endeavors of the alchemists to convert one element into another and to generate living beings from inert matter, pervades the history of nineteenth century science. Perhaps we have been prone rather too eager­ ly to discard the doctrines of former times, banishing many theories which in the course of the last few years have again been found worthy of serious discussion. The exact proportions of the crystal are not essential and it may vary from one to three millimeters on the side. The crystal to be used should never be touched by the fingers, as this often reduces its sensitiveness to an appreciable extent; the proper way to handle the element is to use a pair of tweezers. MARCH 16, 1907. B.-Sodium chloriue crystal in its field of cry!'tallization. Fig. B.-Sodium chloriue crystal in its field of cry!'tallization. Fig. lO.-Segmentation of hquid artificial cells. Fig. 9.-Morphogenetic effect of crystallization. These movements are checked by .premature dry· ing but recommence on the addition of water, suggest­ ing an analogy to the la­ tent life of seeds and 1'0- tifera. Fig. B.-Sodium chloriue crysta its field of cry!'tallization. As the ions or constitu­ ents of dissolved salts dif­ fuse independently, part of the molecule appears to be assimilated, or fixed in the cell, while the rest is elim­ inated. A diffusing drop of copper sulphate, for ex- LEDUC'S CURIOUS AR Although tbey are compo ample, leaves at the center a yellow nucleus consisting of metallic copper. This is surrounded by a blue rinG of the unaltered solution which is itself surrounded by a translucent ring con­ taining bubbles of gas due to the action of the released sulphuric acid upon the gelatine. if Fig. 9.-Morphogenetic effect of crystallization. Fig. lO.-Segmentation of hquid artificial cells. Fig. B.-Sodium chloriue crystal in its field of cry!'tallization. LEDUC'S CURIOUS ARTIFICIAL PLANTS, CELLS, AND TISSUES, PRODUCED BY CANE SUGAR, COPPER SULPHATE AND POTASSIUM FERROCYANIDE. Although tbey are composed of inert matter, I.hese objects sprout, branch, and nourish tbemselves like actual living organisms. Although tbey are composed of inert matter, I.hese objects sprout, branch, and nourish tbemselves like actual living organisms. fluid a tinted drop of the same fluid between two drops of greater osmotic pressure. The central drop repre­ sents the nucleus, the others the centrosomes of the living cell undergoing segmentation. The central drop becomes granular and develops a pigmented ring which represents the chromatic band of the natural process and, like it, breaks up into chromosomes. These move toward the centrosomes and collect about them, form­ ing two nucleated pigmented masses. Meanwhile a partition has formed between these masses which is continuous with their spherical walls, so that finally we have the image of two cells, with nuclei, proto- 1)\a“ID, ana. cell -wallS, llTesseu close1y togetner. Artificial cells are affected in structure and develop­ ment by moisture, dryness, acids, allralies, and various other ̝ubstances added either to the drop of liquid or the surrounding gelatine. MARCH 16, 1907. LEDUC'S CURIOUS ARTIFICIAL PLANTS, CELLS, AND TISSUES, PRODUCED BY CANE SUGAR, COPPER SULPHATE AND POTASSIUM FERROCYANIDE. Although tbey are composed of inert matter, I.hese objects sprout, branch, and nourish tbemselves like actual living organisms. of metallic copper. This G of the unaltered solution by a translucent ring con­ the action of the released fluid a tinted drop of the same fluid between two drops of greater osmotic pressure. The central drop repre­ sents the nucleus, the others the centrosomes of the living cell undergoing segmentation The central drop solutions of sodium chlo cell tissues (Fig. 7) ar of cells observed in natu duced by suitably regula Fig. :I.-Artificial organs showing mushroomsbape. Fig. :I.-Artificial organs showing mushroomsbape. Fig. 3.ÍCu1turÎ of a slugle artificial grain. Fig.t.-An artiJicial plant which was produced in a test.tube. Fig. 3.ÍCu1turÎ of a slugle artificial grain. Fig. 3.ÍCu1turÎ of a slugle artificial grain. Fig. 4.-Artificial seaweed produced from an artificial cell. The internal mechanism of the processes controlling the behavior of these arti­ ficial plants will be better understood by briefly reo ferring to Leduc's previous experiments.* In these ex­ periments two mutually precipitating solutions­ e. g., potassium ferrocy­ anide and a salt of cop­ per-were sprinkled on gelatine-coated glass. The copper ferrocyanide depos­ ited at the surfaces of con­ tact of the drops formed the envelopes of polygonal cells. Similar cells are formed when potassium so­ lution alone is sprinkled on the ̛elatine. Fig. 4.-Artificial seaweed produced from an artificial cell. Fig. :I.-Artificial organs showing mushroomsbape. Fig.t.-An artiJicial plant which was produced in a test.tube. Fig.t.-An artiJicial plant which was produced in a test.tube. Fig. 7.-Liquid cell tissues. Fig.5.-Field of diffusion between two opposile poles. FIg.6.-Artificial cell tissue. Fig.5.-Field of diffusion between two opposile poles. -Liquid cell tissues. ll.-A rtificial and natural karyokinesis. SUGAR, COPPER Mutual reactions of un­ like poles, then, would account for the whole of the physiological phe: nomen a of the organism. In fact they produce liquid currents which car­ ry along any suspended particles, while the mu­ tual reactions of like poles cause suspended particles to be accumulated in the neighborhood of a positive pole, thus producing the phenomenon of agglutina­ tion. Even in the produc­ tion of cell tissues, as shown by the artiil.cial tis­ sue represented in Fig. 6, no other forces are pres­ ent. MARCH 16, 1907. The phe­ nomena in question are best represented by con­ sidering the seat of the tendency to diffusion as a field of force, in every way resembling Faraday's mag­ netic and electric fields. In fact, any point in a liQuid at which the con­ centration is greater than in the surrounding. parts, represents a center of force of diffusion, and the same remark applies to points of lower concentra­ tion than their surround­ ings. If a point of the former ldnd be called a "positive pole of diffu­ sion," a point of smaller concentration should be termed a "negative" pole. Now, poles of different kinds (Fig. 5) will attract each other in exactly the same manner as electric or magnetic poles of op­ posite signs, the general phenomena of motion be· ing precisely the same in the two cases. tion. Theil' growth is thus no doubt a real one like that of a plant, a small (artificia\) seed developing into a complex form several hundred times larger than itself. Jlue algre. The protoplasm may be separated from the· cell wall and contracted about the nucleus, or it may fill the whole cell. The cells may be naked or sur̜ rounded by thick walls. They may be in contact with each other or separated by intercellular spaces, etc. If drops of water tinted with India ink are scattered over a solution of potassium nitrate, the cells, at first radially striped, soon become granular. Then seg­ mentation takes place and the cells breal, up into polyhedral daughter cells. than itself. It is further interesting that the products of growth arising from the artificial seed are, lil,e real plants susceptible to numerous chemical and physical re actions. In fact, their development is arrested by many poisons, while their direction and growth are determined by differences in the internal diffusion pressure and in temperature. However, there are still further analogies between these artificial organ isms and real ones. The former, like the latter, are endowed with the power of healing any' injury, as whenever a stem is broken before the completion of its g I' 0 w t h , the fragments cling to and combine with one another, after which the process· of growth again commences. There is only a single function of living plants which has not so far been artificially reproduced, viz., propaga­ tion in successive genera­ tions. MARCH 16, 1907. Except for this de­ fect the whole of the vital process of vegetable organ­ isms would have been imi­ tated artificially, at least in its outward appearance; this problem, however, seems to be susceptible of realization like those al­ ready solved. The internal mechanism of the processes controlling the behavior of these arti­ ficial plants will be better understood by briefly reo ferring to Leduc's previous experiments.* In these ex­ periments two mutually precipitating solutions­ e. g., potassium ferrocy­ anide and a salt of cop­ per-were sprinkled on gelatine-coated glass. The copper ferrocyanide depos­ ited at the surfaces of con­ tact of the drops formed Fig.t.-An artiJicial plant which than itself. It is further interesting that the products of growth arising from the artificial seed are, lil,e real plants, susceptible to numerous chemical and physical re­ actions. In fact, their development is arrested by many poisons, while their direction and growth are determined by differences in the internal diffusion pressure and in temperature. However, there are still further analogies between these artificial organ­ isms and real ones. The former, like the latter, are endowed with the power of healing any' injury, as whenever a stem is broken before the completion of its g I' 0 w t h , the fragments cling to and combine with one another, after which the process· of growth again commences. There is only a single function of living plants which has not so far been artificially reproduced, viz., propaga­ tion in successive genera­ tions. Except for this de­ fect the whole of the vital process of vegetable organ­ isms would have been imi­ tated artificially, at least in its outward appearance; this problem, however, seems to be susceptible of realization like those al­ ready solved. The phenomenon of karyokinesis observed in the segmentation of living cells, with the characteristic spindle-shaped figUl'e of curves connecting two focal points, is produced artificially by' placing in a viscous Fig.t.-An artiJicial plant which was produced in a test.tube. Fig. 3.ÍCu1turÎ of a slugle artificial grain. Fig. 4.-Artificial seaweed produced from an artificial cell. Fig.5.-Field of diffusion between two opposile poles. FIg.6.-Artificial cell tissue. Fig. B.-Sodium chloriue crystal in its field of cry!'tallization. Fig. 9.-Morphogenetic effect of crystallization. Fig. lO.-Segmentation of hquid artificial cells. Fig. :I.-Artificial organs showing mushroomsbape. Fig. 7.-Liquid cell tissues. Fig. ll.-A rtificial and natural karyokinesis. • SCIENTIFIC AMERICAN, September 2, 1905. .. ' ... The screws are caused to revolve at the rate of 1,200 revolutions a minute by means of a fric­ tion drive so adjusted that the screw stops after it has been driven the required distance. 235 MARCH 16, 1907. By introducing a 5 to 10 per cent solution of potassium ferrocyanide in­ to 5 to 10 per cent solu­ tions of gelatine, the cell tissue represented in this figure is eapily obtained; each such cell, liI,e a natu- ral one, possesses an en­ al living organisms. veloping membrane, proto­ plasm and a nucleus. With olutions of sodium chlorjde, however, entirely liquid ell tissues (Fig. 7) are obtained. All the varieties f cells observed in nature. can thus be artificially pro­ uced by suitably regulating the conditions of the ex­ eriment. Even the strange karyokinetic figures pro­ uced during the segmentation of cells, and of which o adequate explanation has yet been given, are read­ y obtained in these artificial growths. During the process of formation the artipcial cell is the seat of active mole­ cular motion, consisting of an inward current of wa­ ter from the moist gela­ tine and a current of dis­ solved matter flowing from the center to the surface. This apparent life can be prolonged by maintaining around the cell an environ­ ment that will feed it or replace the loss due to diffusion. Mutual reactions of un­ like poles, then, would account for the whole of the physiological phe: nomen a of the organism. In fact they produce liquid currents which car­ ry along any suspended particles, while the mu­ tual reactions of like poles cause suspended particles to be accumulated in the neighborhood of a positive pole, thus producing the phenomenon of agglutina­ tion. Even in the produc­ tion of cell tissues, as shown by the artiil.cial tis­ sue represented in Fig. 6, no other forces are pres­ ent. By introducing a 5 to 10 per cent solution of potassium ferrocyanide in­ to 5 to 10 per cent solu­ tions of gelatine, the cell tissue represented in this figure is eapily obtained; each such cell, liI,e a natu- ral one, possesses an en­ veloping membrane, proto­ plasm and a nucleus. With jde, however, entirely liquid obtained. All the varieties e. can thus be artificially pro­ ng the conditions of the ex­ nge karyokinetic figures pro­ tation of cells, and of which has yet been given, are read­ ficial growths. FIg.6.-Artificial cell tissue. Fig.5.-Field of diffusion between two opposile poles. Fig. 7.-Liquid cell tissues. Fig. 7.-Liquid cell tissues. Fig. ll.-A rtificial and natural karyokinesis. ANE SUGAR, COPPER Fig. MARCH 16, 1907. Under the influence of the difference of osmotic pressure between the drop and the surrounding liquid, water' passes inward through the membrane of copper errocyanide which the sugar cannot traverse. The drop, or cell, increases in size and puts forth a bud which is immediately surrounded by a pellicle and prolife;'ates in turn. In' this way is formed, slowly, a chain of connected cells, the last of which may have ig. :I.-Artificial organs showing mushroomsbape. ten times the diameter of the original drop. This scientist, as above men· tioned, had succeeded in proving the life of cells to be controlled by the forces of diffusion, the artificial cells and cell tissues ob­ tained by him showing ex­ actly the ·same behavior as that shown by animal and vegetable cells. The phe­ nomena in question are best represented by con­ sidering the seat of the tendency to diffusion as a field of force, in every way resembling Faraday's mag­ netic and electric fields. In fact, any point in a liQuid at which the con­ centration is greater than in the surrounding. parts, represents a center of force of diffusion, and the same remark applies to points of lower concentra­ tion than their surround­ ings. If a point of the former ldnd be called a "positive pole of diffu­ sion," a point of smaller concentration should be termed a "negative" pole. Now, poles of different kinds (Fig. 5) will attract each other in exactly the same manner as electric or magnetic poles of op­ posite signs, the general phenomena of motion be· ing precisely the same in the two cases. h SImilar, on a small scale, ith solid "seeds:" When a taining a trace of potassium nto a dilute solution of cop­ syrup becomes covered with yanide, forming an artificial of the difference of osmotic and the surrounding liquid, ugh the membrane of copper ugar cannot traverse. The size and puts forth a bud rrounded by a pellicle and this way is formed, slowly, the last of which may have ten times the diameter of the original drop. This scientist, as above men· tioned, had succeeded in proving the life of cells to be controlled by the forces of diffusion, the artificial cells and cell tissues ob­ tained by him showing ex­ actly the ·same behavior as that shown by animal and vegetable cells. MARCH 16, 1907. MARCH 16, 1907. drops phenomena of growth SImilar, on a small scale, to those obtained later with solid "seeds:" When a solution of cane sugar containing a trace of potassium ferrocyanide is dropped into a dilute solution of cop­ per sulphate the drop of syrup becomes covered with a pellicle of copper ferrocyanide, forming an artificial cell. Under the influence of the difference of osmotic pressure between the drop and the surrounding liquid, water' passes inward through the membrane of copper ferrocyanide which the sugar cannot traverse. The drop, or cell, increases in size and puts forth a bud which is immediately surrounded by a pellicle and prolife;'ates in turn. In' this way is formed, slowly, a chain of connected cells, the last of which may have Fig. :I.-Artificial organs showing mushroomsbape. ten times the diameter of the original drop. This scientist, as above men· tioned, had succeeded in proving the life of cells to be controlled by the forces of diffusion, the artificial cells and cell tissues ob­ tained by him showing ex­ actly the ·same behavior as that shown by animal and vegetable cells. The phe­ nomena in question are best represented by con­ sidering the seat of the tendency to diffusion as a field of force, in every way resembling Faraday's mag­ netic and electric fields. In fact, any point in a liQuid at which the con­ centration is greater than in the surrounding. parts, represents a center of force of diffusion, and the same remark applies to points of lower concentra­ tion than their surround­ ings. If a point of the former ldnd be called a "positive pole of diffu­ sion," a point of smaller concentration should be termed a "negative" pole. Now, poles of different kinds (Fig. 5) will attract each other in exactly the same manner as electric or magnetic poles of op­ posite signs, the general phenomena of motion be· ing precisely the same in the two cases. drops phenomena of growth SImilar, on a small scale, o those obtained later with solid "seeds:" When a olution of cane sugar containing a trace of potassium errocyanide is dropped into a dilute solution of cop­ per sulphate the drop of syrup becomes covered with a pellicle of copper ferrocyanide, forming an artificial ell. As the running boys pass the bell there is a distinct drop in pitch As the running boys pass the bell there is a distinct drop in pitch The school bell and good legs are all that are needed for this experiment. Students who make it find it easier, as a rule, to understand the relation between pitch, wave length, and the number of vibra­ tions. . Where elementary astronomy is taught, the same experiment may prove to be a helpful as well as a healthful diversion during the study of a rather abstruse chapter-the application of the spectroscope to the determination of the radial motion of stars. -long stem like upward and rootlike downward exten­ sions.' "'Soon afterward the cell begins to grow exclusively at the top, so that it passes from a rounded to an elongated form. If the vessel is tipped the extremity continues to grow vertically.' It should be observed that the Leduc _ phenomena were first observed by Traube in 1867 (Archiv. f. An­ atomie u. wissenschaftliche Medizin, 1867, p. 67), who produced them. Such artificial cells have long been known as Traube cells. Traube also produced them by means pf tannin and lead acetate, water glass and· lead acetate, gelatine and tannin, and the like. In repeating Leduc's experiments Prof. Hans Molisch found that the acetate and the chloride of copper produce better re­ sults than the sulphate. The sugar, salt, and gelatine serve to increase the growth and ramification, but it should be pointed out that Reinke described branched and tree-like artificial growths more than twenty years ago.* If crystals of copper sulphate are thrown into a solution of water glass they become enveloped - in light blue pellicles of copper silicate and these silicate cells develop into tree-like forms if sufficient water glass' is present. "'When the pellicle is ruptured the escaping solu­ tion soon becomes inclosed in a membrane of precipi­ tate resembling a graft, excrescence, or branch of the cell.' Select the swiftest runner of the school. Give him a bell, and place him on level ground at some hundred feet from the rest of the class. At a signal, the stu­ dents run as fast as they can toward the bell bearer, while he-himself runs toward the students, without ceasing for a moment to ring his bell. As the running boys pass the bell there is a distinct drop in pitch So Jong as some distance remains between the students and the bell, nothing abnormal seems to occur, although the stu­ dents, without being aware of it, perceive a sound of a somewhat higher pitch than that which strikes the ear of the bell bearer. But at the precise moment when the. runners pass the bell, and instead of running to­ ward it begin to run away from it, there is an instan­ taneous and very distinct dropping of the pitch of the sound, which remains graver as long as the distance increases between the runners and the man who rings the bell. "Traube's forty-eight series of experiments made in 1865-7, and his later researches, published in 1875, in­ clude Leduc's results and many others. And these ex­ periments. have been varied almost ad infinitum by others. I need mention only Pfeffer's arborescent forms.t "The conclusion to be drawn from all these experi­ ments is that the form obtained depends on the me­ dium and, to some degree, on the shape of the vessel. "I have also obtained the Leduc forms by following Traube's general directions. The vaI:ious salts were thrown into a 5 per cent solution of potassium ferro- SPECIAL CAMERA FOR COPYING AND ENLARGING. Even Leduc's discovery that artificial cells, like natural cells, are affected by vari­ ous influences was anticipated by Traube, who described the effects of light and gravi- tation and the variations in form and rapid­ ity of growth produced by adding grape sugar, salt, etc. In Molisch's opinion Le­ duc's experiments mark no advance beyond the results obtained by Traube in 1867. His artificial cells teach nothing new and they are no more like living organisms than a paper flower is like a real flower or a wax doll is J..ike a living child. While the hearers are running toward the source of vibrations, they meet, in a given time, a greater number of these than if both the bell and the boys had remained in the same place. When the bell bearer and the stUdents ran away from each other, the hear­ ers go in the same direction as the vibra­ tions, and the reverse phenomenon occurs­ the number of vibrations which reach the ear in every second is smaller than it would have been had all the participants remained on the spot. * Prof. D'Arsonval, who presented Leduc's note, has recently (January 21, 1907) presented a communication from Charrin and Goupil describing experiments which prove that no phenomenon analogous to nntrition occnrs in the prodnction of these arborescent growths. * Reinke, Botanische Zeitung, 1875, p. 432. MARCH 16, 1907. In this way many varieties can be produced, including cells with dark' or light !luclei, with or without nucleoli, and cells of homo­ geneous protoplasm without nuclei, like the cells of All living organisms are made up of solutions of cI'ystalline substances and colloids; when their con· centration increases, the molecular force of crystalliza­ tion is manifested. Each center of crystallization sur­ rounds itself with a field of force (Fig. 8) that in some cases is rather intricate, and whenever, besides the Prof. Leduc also produced in these experiments with Scientific America.n MARCH 16, 1907. MARCH 16, 1907. problem as of the same order with the preceding.' In his communication of last week M. Leduc asserts that his note of July 24, 1905, began with a mention of Traube's work. Here is the mention: 'We have an artificial cell similar to Traube's but differing from it in possessing the power, not only of expansion and enlargement, but also of emitting prolongations ana­ logous to roots and stems, which grow visibly and slowly.' This sentence demonstrates Leduc's ignorance of Traube's writings,* from which I quote as follows: "'Forms which sometimes resemble a rhizoma with forces of crystallization, other forces, differences in osmotic (diffusion) pressure, are present, forms are obtained which in their outward appearance resemble certain inferior arganisms. As the solid tissues of organisms are produced by solidification from the so­ lutions above referred to, their shape and structure necessarily are influenced by the force of crystalliza­ tion (Fig. 9). cited above show that all of Leduc's results were ob­ tained before him. "Our colleague, M. Gerner, has produced growths which could be preserved in paper like dried plants and which were mistaken for seaweeds by amateur botan­ ists. Some of these arborescent forms have long been exhibited in apothecaries' windows, especially at Nancy. When drops of a solution are introduced into the same solution at different concentration, these drops at first spread out in all directions; owing, however, to the effect of molecular attraction (or co- hesion) there soon takes place a granular segmentation of the liquid (Fig. 10). In fact, as this cohesion between the various molecules is different, those between which the attraction is greatest will combine into spherical grains as soon as the. force of at­ traction exceeds the force of diffusion, while the other molecules fill the intervals between the grains. In this way the phenomena of segmentation observed in germinating eggs, which had previously seemed so puzzling, are not only accounted for but can be read­ ily imitated by an artificial process. "It is difficult to see what new fact is brought out by Leduc's experiments. I am not now speaking of the curious experiments in which he reproduced the structure of organized tissues-that is a dif­ ferent question. A.N EXPERIMENT IN ACOU<TICS. * Moritz Traube, Centralblatt fUr medizinische Wissenschafl, 1865. Archiv. fUr Anat., Phys. und wissenschaltliche Medizin, 1867, p. 87. Botanische Zeitnng, 1875, p. 56. t Pfeffer, Osmotische U ntersuchnngen, 1877, p. 11. Botanisches Institnt, TUbingen, 1886, vol. ii., p.30. * Moritz Traube, Centralblatt fUr medizinische Wissenschafl, 1865. Archiv. fUr Anat., Phys. und wissenschaltliche Medizin, 1867, p. 87. Botanische Zeitnng, 1875, p. 56. t Pfeffer, Osmotische U ntersuchnngen, 1877, p. 11. Botanisches Institnt, TUbingen, 1886, vol. ii., p.30. Scientific America.n shresisin "In his notes to the Academy, Leduc as­ serts that his pretended artificial plants give evidence of cellular structure, circulating system, thermotropism, osmotropism, and nutrition. "It is well known that the forces which act in living beings are simply physico­ chemical forces. Traube and others have studied the effect of these forces on semi­ permeable membranes and Leduc has added nothing to their results. As for cellular structure and circulatory system nothing of the sort is to be found in these tubular pre­ cipitates. * From Lehmann's researches on apparently living crystals it is inferred that certain crystallized structures show a behavior quite analogous to inferior organisms, moving, growing, feeding, and propagating them­ selves like the latter. The investigations by Prof. Leduc which have been described above, on the other hand, prove that the funda­ mental element of animal and vegetable organisms, viz., the cell̗ is exclusively con- trolled in its vital functions by the same physical laws that govern tj:le forms of the mineral kingdom. From bo-th sides there is thus being constructed a bridge between the province of inert matter and that of living matter, and in t11e place of the strict barriers previously supposed, we are war­ ranted in presuming the existence o{ a multitude of gradual transitions and intermediary stages. "It has been maintained that Leduc has made no claim to the creation of life by spontaneaus generation, but this assertion is contradicted by his own words, quoted above. f "The net result of the whole affair is sim­ ply nil." A.N EXPERIMENT IN ACOU<TICS. As the running boys pass the bell there is a distinct drop in pitch As the pitch of a sound de­ pends upon the number of its vibrations per second, that of the bell will drop at the very moment when the distance between bell and hearers ceases to decrease and begins to increase. Prof. Gaston Bonnier, of the Academie des Sciences and the University of Paris, entertains very skeptical views of the bio­ logical value of Leduc's experiments. These views he has voiced as follows in La Sci­ ence au. XXme Siecle: If the man who rings the bell can be pro­ vided with a bicycle, the fall in the pitch of the sound is of course still more pro­ nounced. "I pointed out to the Ac<,demy, in the meeting of December 24, 1906, that these tubular precipitates had long been known and possessed no organization comparable with that of living things. I also repeated before the Academy, some interesting vari­ ations of these amusing experiments de· vised by one of my pupils-a minor. In I,a Revue of January, 1907, I showed that this alleged discovery was only a repetition ('f Traube's classical experiments. AN EXPERIMENT IN ACOUSTICS. BY GUSTAVE MICHAUD. As the running boys pass the bell there is a distinct drop in pitch . SPECIAL CAMERA FOR COPYING AND ENLARGING. The camera illustrated here is one that was designed and built for the United States Geological Survey for photographing fossils or other similar objects. In photographing fossils th̘ Survey uses a process known as the W'il­ liams process. This method was worked out by Prof. Henry S. Williams and Norman W. Carkhuff, and con­ sists in an elimination of the color of the tossil by a process of sublimation. SPECIAL CAMERA FOR COPYING AND ENLARGING. j p g p g fossils th̘ Survey uses a process known as the W'il­ liams process. This method was worked out by Prof. Henry S. Williams and Norman W. Carkhuff, and con­ sists in an elimination of the color of the tossil by a process of sublimation. cyanide or a 10 per cent solution of sodium or potas­ sium silicate. The production of these precipitates is a common lecture experiment. Leduc asserts that all forms obtained by earlier experiments were stunted, unstable, and shapeless but that his culture liquids pro­ duce large, stable growths with sharply differentiated roots, stems, and apical organs. But the descriptions "At the meeting of January 7, 1907, Prof. Leduc made a rejoinder to which I replied on January 14, as follows: "In a lecture just published M. Leduc expresses his amazement that Pasteur's researches have for thirty years silenced the discussion of spontaneous genera­ tion, and the brochure ends with the words: 'To com­ plete the synthesis of life only one function remains to be realized-successive reproduction. I regard this Fossils cannot be photographed for scientific pur­ poses in a haphazard manner. There are certain char­ acteristics that must always be orientated in r ̙latively
https://openalex.org/W3119767374
https://elar.urfu.ru/bitstream/10995/101291/1/technogen_2019_21.pdf
English
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Modified Collector: New Approaches
KnE materials science
2,020
cc-by
1,722
Modified Collector: New Approaches Institute of Metallurgy and Ore Beneficiation JSC., Almaty., Kazakhstan How to cite this article: Ainur Aitkazynovna Mukhanova, (2020), “Modified Collector: New Approaches” in IV Congress “Fundamental research and applied developing of recycling and utilization processes of technogenic formations”, KnE Materials Science, pages 120–123. DOI 10.18502/kms.v6i1.8055 Page 120 ping of recycling and utilization processes of technogenic formations”, KnE Materials Science, pages 120–123. Page 120 inur Aitkazynovna Mukhanova, (2020), “Modified Collector: New Approaches” in IV Congress “Fundamental P 120 KnE Materials Science TECHNOGEN-2019 IV Congress “Fundamental research and applied developing of recycling and utilization processes of technogenic formations” Volume 2020 KnE Materials Science TECHNOGEN-2019 IV Congress “Fundamental research and applied developing of recycling and utilization processes of technogenic formations” Volume 2020 Conference Paper Conference Paper Conference Paper Modified Collector: New Approaches Ainur Aitkazynovna Mukhanova Institute of Metallurgy and Ore Beneficiation JSC., Almaty., Kazakhstan Abstract The process of complex raw materials is currently characterized by the fine-dispersed mineralogical structure and difficult structural characteristics complicating the flotation process. In this study, the processing methods for flotation of Aktogay deposits of copper-molybdenum ore were performed by using basic and modified agents. The properties of modified collector based on Kumkol deposit and diesel fuel were studied using the standard methods. The testing technology included the grinding of initial ore to a particle size of 65% of the class -0.074 mm, collective flotation to produce coarse copper-molybdenum concentrate, desorption, regrinding of the collective copper-molybdenum concentrate to 95% of the class -0.074 mm, selection of the collective concentrate. It was established that this application increased the extraction of copper/molybdenum concentrate by 3.8 % without loss of concentrate quality. This technology is applicable to mining and beneficiation enterprises processing molybdenum ores. Corresponding Author: Ainur Aitkazynovna Мukhanova ainura-muhanova@mail.ru Published: 31 December 2020 Corresponding Author: Ainur Aitkazynovna Мukhanova ainura-muhanova@mail.ru Keywords: copper, molybdenum concentrate, modified agent. Publishing services provided by Knowledge E Ainur Aitkazynovna Мukhanova. This article is distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use and redistribution provided that the original author and source are credited. The economy of Kazakhstan is based on the mining and metallurgical complex, which plays an important, and in a number of sectors, strategic role not only in Kazakhstan, but also in the world. In the technology for producing non-ferrous metals, the primary operation determining the degree of their extraction is flotation beneficiation. The flotation reagents used in the technological cycle are foreign origin, which results to the import dependence. Therefore the development of methods for producing of new flotation reagents based on domestic raw materials is an urgent task, which is intensified in light of the decrease in stocks of relevant raw materials. Selection and Peer-review under the responsibility of the TECHNOGEN-2019 Conference Committee. In recent years interest in heteroorganic compounds of oil has grown substantially in terms of their use in the flotation of polymetallic ores [1–3]. Emulsified apolar reagents are especially useful for flotation of slimy minerals. New and effective methods with mechanical and especially ultrasonic emulsification can provide the preparation of stable emulsions having finely dispersed, uniform in parti- cle size distribution. Their usage during flotation as collectors allows to reduce their consumption to a minimum. However oil application to the flotation process as apolar collectors increases the cost of the beneficiation process. In this regard it is necessary KnE Materials Science TECHNOGEN-2019 to find more cheap organic compounds, and their adding to oil would reduce its consumption without compromising the quality of the flotation properties of the final composition. In preliminary studies we showed that such cheap organic compounds can be heating oil and diesel fuel. Kumkol oils are light, low-sulfur, low-paraffin, and light-curing ores. According to Infared measurement spectra it was found that normal and isostructure paraffin struc- tures prevail in the studied samples. The presence of naphthenic and aromatic struc- tures is detected. These compounds are contained in significantly smaller quantities than paraffin. There is no carbonyl group, oil is not oxidized [4, 5]. The oil of the Kumkol deposit contains (sulfur compounds), natural emulsifiers and affecting the stability of emulsions obtained for flotation beneficiation. Publishing services provided by Knowledge E According to the data of physical and chemical studies the heating oil contains mainly aliphatic hydrocarbons, and aromatics in a much smaller amount whereas aromatic compounds predominate in diesel fuel as compared to heating oil. For further research diesel fuel and oil of the Kumkol deposit were selected and mixtures were prepared on their basis to obtain the flotation reagents (see table below). Emulsions of apolar reagents were prepared as follows: 50 ml of water and 1 ml of the initial reagent were poured into a cylinder with a stopper. Vigorously mixed on an ultrasonic disperser ”USDN-A1200T” company ”NPP” Ukrrospribor ”. It has been previously established that the optimal exposure time for ultrasound is 6 minutes. Immediately after receiving the emulsion, it was poured from a glass into a test tube to determine the time of separation into two phases. The experimental results are presented in table 1. ABLE 1: The experimental results of determining the stability of the emulsion TABLE 1: The experimental results of determining the stability of the emulsion №p/p Ratio of components Stratification time, day 1 Modified Reagent 1: 1 (oil + diesel fuel) 3 2 Modified Reagent 1: 2 (oil + diesel fuel) 1 3 Modified Reagent 2: 1 (oil + diesel fuel) 6 TABLE 1: The experimental results of determining the stability of the emulsion №p/p Ratio of components Stratification time, day 1 Modified Reagent 1: 1 (oil + diesel fuel) 3 2 Modified Reagent 1: 2 (oil + diesel fuel) 1 3 Modified Reagent 2: 1 (oil + diesel fuel) 6 From the data obtained it is clear that the longest time for separation of the mixture is observed for emulsion No. 3, consisting of one part of diesel fuel and 2 parts of oil, i.e. this emulsion is the most stable. However, from the point of view of production, this period is quite long, mixture No. 1 is more acceptable. The mixture No. 2 is least stable. The surface tension of emulsions based on a mixture of oil from the Kumkol deposit and diesel at different pH values was determined by the Wilhelmy method [5]. Publishing services provided by Knowledge E From the data obtained (see table below) it is evident that the surface tension of emulsions DOI 10.18502/kms.v6i1.8055 Page 121 KnE Materials Science TECHNOGEN-2019 TABLE 2: Surface tension value № p/p pH value Concentration of emulsions, C % The ratio of the mixture of oil and diesel fuel, 𝜎, mN / m 1:1 1:2 2:1 1 рН – 6,0 0,5 1,0 1,5 56 68 67 51 63,5 63,5 48 60 65 2 рН – 8,0 0,5 1,0 1,5 55 69 70 52 66 63 42 58 62 3 рН – 10,0 0,5 1,0 1,5 54 68 69 58 66 68 48 63 67 The ratio of the mixture of oil and diesel fuel, 𝜎, mN / m TABLE 3: Closed cycle copper-molybdenum ore flotation results TABLE 3: Closed cycle copper-molybdenum ore flotation results Product Name Output, % Content% Extraction% Note Mo Cu Mo Cu Cu concentrate 0.23 0.6 20.0 5.53 63.25 Basic technology (with kerosene) – 150 gram/tonna Mo concentrate 0.056 35.0 5.0 78.50 3.85 Tails 99.714 0.004 0.024 15.97 32.90 Ore 100 0.025 0.073 100 100 Cu concentrate 0.22 0.53 21.0 4.96 63.23 Modified Reagent 1: 1 (oil + diesel fuel) – 125 gram/tonna Mo concentrate 0.054 35.8 3.6 82.31 2.66 Tails 99.726 0.003 0.025 12.73 34.11 Ore 100 0.023 0.073 100 100 based on oil and diesel fuel, taken in a ratio of 2: 1, is lower compared to 1: 2 and 1: 1 at all pH values. With an increase in the concentration of modified flotation reagents in the emulsion, the surface tension also increases, and with an increase in pH, on the contrary, it decreases. The latter can be explained by the fact that the molecules of the tested emulsions lose their activity due to the deterioration of their dissociation in an alkaline medium. Thus the results of surface tension measurements showed that the emulsion with a reagent ratio of 1: 1 and a concentration of 1% at a pH of 8.0 has the highest surface activity at the “liquid – gas” interface. The enlarged laboratory tests of the technology for the selection of collective copper- molybdenum concentrate using a modified reagent MF were carried out. Publishing services provided by Knowledge E The testing technology included the grinding of initial ore to a particle size of 65% of the class -0.074 mm, collective flotation to produce coarse copper-molybdenum concentrate, DOI 10.18502/kms.v6i1.8055 Page 122 KnE Materials Science TECHNOGEN-2019 desorption, regrinding of the collective copper-molybdenum concentrate to 95% of the class -0.074 mm, selection of the collective concentrate. The results of flotation in a closed cycle in comparison with the basic technology are presented in table 3. Due to the process of processing copper-molybdenum ore using a modified reagent, a copper concentrate with a copper content of 21.0 % was obtained when extracting 63.2 % and a molybdenum concentrate with a molybdenum content of 35.8 % was extraction 82.3 %. Thus the use of a modified reagent allows to increase the extraction of molybdenum in molybdenum concentrate by 3.8% without loss of concentrate quality. References [1] Crozier, R. D. (1984). Plant reagents. Mining Mag., vol. 151, issue 3, pp. 202-223. [2] Cousin, Z. P. (1999). Intensification of Flotation of Lead-Zinc Ores using Heteroorganic Compounds of Oil as an Additional Collector. (PhD dissertation, Krasnoyarsk, 1999). [3] Berkova, O. N., Levkovskaya, G. G. and Mirskova, A. N. (1997). Effective Reagents for Collective Flotation of Copper-Molybdenum Ores. Journal of Mining Science, vol. 33, issue 3, рр. 265-268. Retrieved from https://link.springer.com/. [4] Karnaukhov, S. N., Dancer, S. S. and Vilkova, N. V. (2011). Molybdenum-Containing Ore Processing Technology. Mining Journal, issue 8-9, рр. 55-61. Retrieved from www. rudmet.kz. [5] Tusupbaev, N. K., et al. (2012). Improving the Technology of Selection of Copper- Molybdenum Concentrate using Modified Teagents. Complex of the mineral processing, issue 3, pp.15-24. Retrirved from http://kims-imio.kz. [5] Tusupbaev, N. K., et al. (2012). Improving the Technology of Selection of Copper- Molybdenum Concentrate using Modified Teagents. Complex of the mineral processing, issue 3, pp.15-24. Retrirved from http://kims-imio.kz. DOI 10.18502/kms.v6i1.8055 Page 123 Page 123
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https://www.frontiersin.org/articles/10.3389/feduc.2023.1165746/pdf
English
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Supporting and measuring current and future educators' preparedness to facilitate wellbeing of displaced children in schools
Frontiers in education
2,023
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9,311
TYPE Original Research PUBLISHED 02 June 2023 DOI 10.3389/feduc.2023.1165746 TYPE Original Research PUBLISHED 02 June 2023 DOI 10.3389/feduc.2023.1165746 COPYRIGHT COPYRIGHT © 2023 Sklad. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. Results: The study examined the factorability, reliability, and validity of the NTSE scale and showed that the scale is reliable (a = 0.97) and has good convergent and criterion validity. The results also demonstrated that participation in a study module for newcomer educators corresponded with an increase in partakers’ NTSE scores, and the extent of the module was related to the degree of increase. Discussion: The proposed scale performed well in the context where it was tested, but further international research is needed to determine its generalizability to diferent countries and time frames. refugees and asylum seekers, self-efcacy (SE), measurement scale development, competence, wellbeing, pupils, immigrant children refugees and asylum seekers, self-efcacy (SE), measurement scale development, competence, wellbeing, pupils, immigrant children OPEN ACCESS OPEN ACCESS EDITED BY Nicole Jacqueline Albrecht, Flinders University, Australia REVIEWED BY Alberto Crescentini, University of Applied Sciences and Arts of Southern Switzerland, Switzerland Carolyn Gentle-Genitty, Indiana University Bloomington, United States *CORRESPONDENCE Marcin Sklad m.sklad@ucr.nl RECEIVED 14 February 2023 ACCEPTED 27 April 2023 PUBLISHED 02 June 2023 CITATION Sklad M (2023) Supporting and measuring current and future educators’ preparedness to facilitate wellbeing of displaced children in schools. Front. Educ. 8:1165746. doi: 10.3389/feduc.2023.1165746 EDITED BY Nicole Jacqueline Albrecht, Flinders University, Australia REVIEWED BY Alberto Crescentini, University of Applied Sciences and Arts of Southern Switzerland, Switzerland Carolyn Gentle-Genitty, Indiana University Bloomington, United States Marcin Sklad* Department of Social Science, University College Roosevelt, Utrecht University, Middelburg, Netherlands Introduction: Immigrant and refugee children face multiple challenges in accessing education. To help facilitate the educational success and wellbeing of these children, teachers need to have self-efcacy in creating a supportive learning environment for them. Methods: Based on a set of highly interconnected competences identified through a literature review and empirical research, the study developed a measurement instrument to assess teachers’ generalized perceived self-efcacy in the domain of working with refugee children: the Newcomer’s Teacher’s Self- Efcacy (NTSE) scale. The scale was tested for validity and internal consistency with 154 practicing and prospective teachers enrolled at three diferent teacher education institutions in Belgium and the Netherlands, 42 of whom also underwent newcomer education courses. frontiersin.org 1. Introduction Therefore, in addition to systemic institutional solutions, teachers in the field should be able and willing to overcome challenges and create new environments facilitating the educational success of newcomer children. Teachers’ persistence and teaching performance, as well as their students’ outcomes, were demonstrated in multiple studies to be related to teachers’ self- efficacy (Caprara et al., 2006; Klassen and Tze, 2014; Kim and Seo, 2018). Teachers in the field, however, often do not feel qualified to meet the needs of immigrant children in their classroom (Evans et al., 2022), as demonstrated by qualitative studies sampling the experiences of in-service and pre-service teachers of refugees in preferred destination Western countries such as the USA, Canada, Sweden, and Croatia. School staffoften feel that they lack the skills for working with refugee children (Levi, 2019; Vrdoljak et al., 2022); feel not prepared to address the emotional stress experienced by refugee children (Szente et al., 2006); are unable to teach children who have limited command of the host country’s language (Siwatu, 2007; Svensson, 2019); and are afraid that they may say something to their refugee students that might lead to cultural misunderstandings or trigger traumatic memories (McBrien, 2005). Perceived lack of knowledge and self-efficacy in the domain of working with refugees can generate avoidance of refugee students by their teachers, as demonstrated in some studies (Roxas, 2011). Engaging with refugee children requires that teachers believe they have the necessary capacities that are crucial for it. Teachers who lack a sense of mastery in these capacities can distance themselves and avoid refugee students. The belief people have concerning their capability to set a course of action and complete a task within a situation has been described as self-efficacy (Bandura, 1986, 1997). According to those theories, self-efficacy The current article aimed to offer a measurement instrument for self-efficacy beliefs in the realm of teaching displaced children, in particular, refugees. Instruments focused on actual competences such as knowledge, skills, and attitudes do not take into consideration perceived self-efficacy (Caprara et al., 2009), while perceptions of efficacy are critical determinants of how people behave (Bandura, 1997). Teachers’ self-efficacy is said to be specific to the particular settings, subjects, and students (Goddard et al., 2000). Therefore, there is a need to measure the self-efficacy of teachers in the domain of teaching displaced children as a separate construct from a general teacher’s self-efficacy. 1. Introduction In 2021, 36.5 million children were displaced from their homes (UN News, 2022). In recent years, the EU recorded between 120,000 and 350,000 children as first-time asylum applicants per year (Eurostat, 2022). This year, the number is expected to grow substantially due to the war in Ukraine. As stipulated in the United Nations Convention on the Rights of the Child (UNICEF, 1989), access to education is a right of all children, including refugee children. Moreover, the education of displaced children can provide the knowledge and skills to rebuild their lives and give them a chance for a prosperous, peaceful future (Dooley, 2017). In general, 8% of the children in the EU are non-nationals (Eurostat, 2021) and the situation of these migrant children depends, to a large degree, on the school policy and the teachers with whom they interact. Immigrant children and refugee children among them tend to lag behind their native peers in educational attainment. For instance, in the EU, 38% of non-EU-born individuals over 25 years old did not exceed lower secondary education, in comparison to 28% of the native-born population and 20% of the EU-born Frontiers in Education 01 frontiersin.org 10.3389/feduc.2023.1165746 10.3389/feduc.2023.1165746 Sklad influences the belief that one can succeed at a task and meet expectations. Someone’s self-efficacy belief, therefore, affects their motivation, the effort put into the task, the choices made when completing the task, their persistence in the face of difficulties (Bandura, 1977, 1997), and eventually their performance (Peeler and Jane, 2005). Empirical studies confirm the influence of self- efficacy on motivation and effort in numerous areas, academic performance being one (Caprara et al., 2011). Self-efficacy is also an excellent predictor of individual behavior (Goddard et al., 2000). In the context of education, teachers’ self-efficacy concerns their belief about possessing the capacity to bring about the desired outcomes of student engagement and learning (Bandura, 1977). Following the theory of self-efficacy, teachers possessing self-efficacy in the relevant domain are expected to put more effort into their teaching, persevere despite difficulties, and employ effective strategies (Tschannen-Moran and Hoy, 2007). Studies have also confirmed that teachers’ self-efficacy not only affects their behavior but also indirectly impacts their students’ performance (e.g., Knoblauch and Hoy, 2008). population (Eurostat, 2023). In the Netherlands, for instance, newcomer students are three times more likely to be directed to lower forms of secondary education than other primary school graduates (Dutch Inspectorate of Education, 2020). 1. Introduction Studies demonstrated the potential predictive relevance of such specific measures in related domains; for instance, self-efficacy in the area of teaching children with limited host country language command is related to positive attitudes toward such students (Karabenick and Clemens Noda, 2004). An international study carried out in England, Italy, the Netherlands, and Poland showed that teachers’ diversity-related self-efficacy was related to intercultural classroom practices employed by participating teachers (Romijn et al., 2020). Since teachers’ self-efficacy in the specific domain of teaching displaced children can affect their ability to meet the needs of refugee students, it is important to establish what are the essential competences constituting it. 1. Introduction Immigrant children who have good cognitive capacity but do not possess a good command of the host country’s language can be directed to the lowest forms of vocational education, aimed at pupils with learning difficulties. This disadvantage further extends to their position in the job market, with non-EU-born migrants aged between 15 and 29 being two times more likely to be neither in employment nor in education, compared to the native-born population (Eurostat, 2023). First-generation immigrant students in the EU also experience lower life satisfaction and a sense of belonging at the school than their native counterparts (Cerna et al., 2021). influences the belief that one can succeed at a task and meet expectations. Someone’s self-efficacy belief, therefore, affects their motivation, the effort put into the task, the choices made when completing the task, their persistence in the face of difficulties (Bandura, 1977, 1997), and eventually their performance (Peeler and Jane, 2005). Empirical studies confirm the influence of self- efficacy on motivation and effort in numerous areas, academic performance being one (Caprara et al., 2011). Self-efficacy is also an excellent predictor of individual behavior (Goddard et al., 2000). In the context of education, teachers’ self-efficacy concerns their belief about possessing the capacity to bring about the desired outcomes of student engagement and learning (Bandura, 1977). Following the theory of self-efficacy, teachers possessing self-efficacy in the relevant domain are expected to put more effort into their teaching, persevere despite difficulties, and employ effective strategies (Tschannen-Moran and Hoy, 2007). Studies have also confirmed that teachers’ self-efficacy not only affects their behavior but also indirectly impacts their students’ performance (e.g., Knoblauch and Hoy, 2008). There are particular barriers faced by refugee children that need to be taken into consideration to improve their educational prospects, e.g., language difficulties, personal trauma, and cultural differences (Crul et al., 2016). To facilitate refugee children reaching their full potential and wellbeing, education institutions must be prepared to meet their needs (Pinson and Arnot, 2007). The situation of the migrant children depends, to a large degree, on institutional arrangements and school policy. However, the teachers also play an essential role, as they interpret and implement mandated policies (Hos and Kaplan-Wolff, 2020), and they directly influence the development of a child as well as the school climate and practices. Frontiers in Education frontiersin.org 2.1. Language barrier There is often a language barrier between newcomer students and their teachers (Szente et al., 2006; Crul et al., 2016). Some students do not have sufficient command of the host country’s language due to an insufficient number of hours dedicated to language learning (Vrdoljak et al., 2022). This requires teachers to (a) support efficient acquisition of the new language (Walker- Dalhouse et al., 2009) and (b) teach subject matters to students with limited language fluency. On the most fundamental level, to teach effectively, teachers have to assure that students understand what they convey and what is expected (Petersen, 2017; Vrdoljak et al., 2022), but teachers also need to understand students (Gözpinar, 2019). For effective communication with students with limited fluency in the host country’s language, teachers need communicative competence in the context of a multilingual setting (Peko et al., 2010; Gözpinar, 2019). This may include non-verbal communicative competence, active listening, the ability to interpret feedback from students to confirm their understanding (Alptekin, 2002), knowledge of the languages of the countries of origin of students (Peko et al., 2010), and the capacity to use translators and translation tools in the class (Gözpinar, 2019). 2.3. Situational factors afecting these students Another barrier shared by displaced children and other students with a migration background is their current and previous objective situation, though its gravity might be heavier for refugees than for other migrants. Refugees have a different education history compared to regular students (Stevenson and Willott, 2007), often involving interruptions in schooling (d’Abreu et al., 2019) which can even extend to minimal experience with formal schooling (Kirova, 2001). The discrepancy in educational history creates gaps in knowledge among refugee students in comparison to what is assumed (Vrdoljak et al., 2022). In addition to their past situation, a refugee’s present situation should be taken into consideration as well. For instance, refugees often have unstable living and family situations (Stevenson and Willott, 2007), accompanied by uncertainty regarding how long they can stay in their current place as well as a lack of financial resources and support (Lucas, 1997). 2. Challenges for newcomer students and teachers’ competences Perceived lack of knowledge and self-efficacy in the domain of working with refugees can generate avoidance of refugee students by their teachers, as demonstrated in some studies (Roxas, 2011). Engaging with refugee children requires that teachers believe they have the necessary capacities that are crucial for it. Teachers who lack a sense of mastery in these capacities can distance themselves and avoid refugee students. The belief people have concerning their capability to set a course of action and complete a task within a situation has been described as self-efficacy (Bandura, 1986, 1997). According to those theories, self-efficacy is an important determinant of an individual’s behavior, as it Refugee students face distinctive sets of educational, linguistic, and social challenges and the need to successfully integrate (McBrien, 2005; Vrdoljak et al., 2022). Therefore, a particular set of competences is required by teachers to support displaced children, determined by these needs and barriers faced by displaced children. These challenges may include limited command of the host country’s language, personal trauma, and cultural differences (Crul et al., 2016). A literature review revealed five partially overlapping domains of challenges requiring teachers of displaced students to have the competence to adequately respond: (a) Frontiers in Education 02 frontiersin.org Sklad Sklad 10.3389/feduc.2023.1165746 10.3389/feduc.2023.1165746 language barrier, (b) cultural barriers, (c) situational factors affecting students, (d) barriers to parental involvement, and (e) socio-emotional vulnerability. Teachers possessing appropriate intercultural competence can take cultural diversity in their classroom into account, and accordingly adjust and adapt their classroom management, teaching materials, or instructions (Milner, 2011; Kopish, 2016; Gözpinar, 2019) to take into account individual differences between children’s learning and communication styles, as affected by their cultural background (Kopish, 2016; Petersen, 2017). They also can fine-tune assessment so it is appropriate and fair for all students, irrespective of their cultural background (Szente et al., 2006; Petersen, 2017). 2.2. Cultural barrier Teachers have often little awareness of the nature of their refugee students’ backgrounds (Goodwin, 2002) and might not know about the experiences of refugees in their classrooms or are even unaware that they have refugee students (McBrien, 2005). Authors argue that there is a critical need for teachers to better understand the lives of their refugee students (Roxas, 2010) and that such understanding should make them more committed to assist refugee students (Strekalova and Hoot, 2008). This can also further help to foster a postulated individualized approach to education that takes into account the different needs and experiences of every child (Hek, 2005; Kanu, 2008; Roxas, 2010). In addition to the language barrier, refugees, and many other immigrants share the challenge of adapting to a new culture. Researchers have suggested that teachers’ abilities to recognize and respect cultural differences are important for the academic success of refugee students (McBrien, 2005), as cultural competence is necessary to understand diverse students in the classroom and identify their needs (Milner, 2011), and that culturally responsive teaching strategies can support refugee learning (Strekalova and Hoot, 2008; Leeman and van Koeven, 2019; Bennouna et al., 2021). Some scholars postulate that knowing students’ cultural backgrounds might be a necessary condition to respond successfully to diverse learners (Kanu, 2008) as it allows teachers to adapt their instructional practices accordingly, as well as understand students’ perspectives and communication styles, respond more appropriately, and avoid misunderstandings (Milner, 2011). Successful teachers can also potentially bring intercultural understanding across to help students to establish positive relationships with each other (Milner, 2011; Walsh and Townsin, 2015). This competency also involves not only knowledge of the students but also awareness of the teacher’s cultural assumptions and biases. As the content of specific cultural knowledge needed varies between students, universal competence of a critical and open-minded attitude can be of great relevance for an overall teacher’s competence to work in classrooms with diverse students, including refugees (Milner, 2011; Roxas, 2011; Kopish, 2016). frontiersin.org 3. Teacher self-efcacy Displacement and past traumatic experiences (McBrien, 2005; Roxas, 2011) can affect refugee children’s school performance and psychosocial wellbeing, as these students may continue to suffer from mental health consequences of prior adverse life events (Bennouna et al., 2020; Stark et al., 2021) and experience anxiety, depression, and a sense of isolation (Ukasoanya, 2014; Asad and Kay, 2015; d’Abreu et al., 2019). Students who have experienced such events may also find it hard to build relationships (Crul et al., 2016) and may feel insecure (Roxas, 2011). Positive relationships with teachers and peers can provide social support and make it easier to obtain assistance with learning tasks. Therefore, difficulties in building such positive relations can also worsen school performance (Szente et al., 2006). Pre-existing psychological issues may be further exacerbated by acculturative stress, experiences of being discriminated against by the host community, and conflicting demands of cultural norms (Castro- Olivo and Merrell, 2012). Although presented here as separate categories, these competences are highly interconnected and overlap to a large degree. Moreover, their specific content is highly dependent on the particular context. Refugee students are not a homogenous group and differ fundamentally in terms of their specific needs (Hek, 2005). Groups of refugees with divergent backgrounds will face different barriers, as each individual has their unique history and situation. In addition, the institutional context may place very different demands on the teachers of refugees, as the school system, for instance, may provide different amounts of language support and instruction, thus affecting expectations concerning teachers in this regard. In this light, generalized competence and self-efficacy with regard to being a teacher of refugee children may be of greater relevance than specific skills. By necessity, formal assessment at teacher preparation institutions is focused on specific knowledge, skills, and capacities rather than on perceived self-efficacy and a sense of control. However, these perceptions may be actual determinants of how teachers behave in a classroom (Bandura, 1997). To be able to overcome any of these difficulties, teachers should make sure that a classroom is a safe environment. In such environments, students can express themselves and learn about the new country (Gözpinar, 2019). Safe classrooms also foster positive intergroup contact and prevent negative intergroup behaviors (Vrdoljak et al., 2022). 2.4. Barriers to parental involvement The same set of conditions that affect students directly (objective conditions, language, and cultural barriers) are also affecting them indirectly, through their parents. These conditions often limit parental involvement in their child’s education (Rah et al., 2009; Gandarilla Ocampo et al., 2022). Newcomer parents face challenges such as objective hardship (Vrdoljak et al., 2022), lack of stable jobs, incomes, or housing, and limited mobility and available time (Bennouna et al., 2021). Language and cultural barriers can often prevent parents and teachers from understanding each other (Trueba et al., 1990; Peko et al., 2010) or other parents (Kopish, 2016), or even cause them to avoid each other (Gandarilla Ocampo et al., 2022). In addition, newcomer parents lack an Frontiers in Education 03 frontiersin.org 10.3389/feduc.2023.1165746 Sklad pupils’ stories with compassion and react without avoidance, shock, or aversion (Szente et al., 2006; Gözpinar, 2019). understanding of the intricacies of the host country’s educational system (Gandarilla Ocampo et al., 2022; Vrdoljak et al., 2022). In summary, to successfully fulfill the educational needs of refugee children, teachers need a set of intertwined competences: (a) competency to stimulate and foster country language acquisition; (b) communication competence necessary not only to understand and be understood but also to engage and build relationships with students and their parents who may have limited command of the host country language; (c) social–emotional competences for the same reason and further to help emotionally vulnerable students to cope and to create a safe learning environment for them as well as foster their social–emotional development; (d) cultural competency open-mindedness and flexibility to be able to adapt teaching style, materials, and activities and foster the aforementioned relationships; and (e) be able and willing to learn about situational factors affecting their students and take them into account. Parents and parental involvement are important factors in immigrant students’ success (Portes and Rumbaut, 2001). Parents can help structure their children’s studies, but without their support, children have to bear their responsibilities alone (Denessen et al., 2010). It is possible to establish positive parent– teacher relationships with newcomer parents for the benefit of students’ educational growth (Bennouna et al., 2021). The same communicative competences required for supporting students (Peko et al., 2010; Kopish, 2016) can help school staffachieve such a relationship with newcomer parents, possibly engaging a larger newcomer community in the process as well (Bennouna et al., 2021). Frontiers in Education frontiersin.org 3. Teacher self-efcacy To this end, teachers should be capable of stimulating the formation of trusting relationships among students, recognizing existing relationships between students, and being able to moderate and stimulate these relationships (Zins and Elias, 2006). Teachers in the field often feel they are not qualified to meet the needs of refugee children. There is a plethora of studies on the education of migrants, but much fewer studies concerning refugee students, despite their situation being more challenging (McBrien, 2005; Bloch et al., 2015). Moreover, the research into teachers’ competences in the context of refugee education mostly consists of qualitative case studies (Dryden-Peterson, 2017). The limited research into teacher self-efficacy in relation to working specifically with refugee students usually focuses on one specific competency, for instance, multicultural self-efficacy (Sleeter, 2001; Guyton and Wesche, 2005). There is a need for research focusing on the general self-efficacy of teachers in the domain of refugee education. To support overcoming the deficiency in this area, in this study, we propose a questionnaire instrument to assess teachers’ generalized perceived self-efficacy in the domain of working with refugee children, which should be suitable for In addition to assuring a positive classroom climate, refugees’ teachers may be expected to fulfill the roles of psychological counselors, social workers, and life coaches for their students (Kanu, 2008). Providing social and emotional support in schools can be seen as a necessary condition for newcomer children to realize their human right to education (Evans et al., 2022). These types of support require not only classroom communicative and management skills but also an empathic attitude (Southern, 2007) and social–emotional skills related to social identity and relationship building (Bennouna et al., 2021). To make students feel safe and understood, teachers should be able to listen to their 04 frontiersin.org 10.3389/feduc.2023.1165746 Sklad TABLE 1 Newcomers’ teachers’ competences. The empirical results confirmed the indications from the literature review and led to the formulation of nine concrete competences using the Delphi method, involving eight Dutch and Belgian experts responsible for setting up newcomers’ teacher education modules. The competences were translated into learning objectives (see Table 1) in setting up university courses and in the creation of a self-efficacy measurement tool, the Newcomer’s Teacher’s Self-Efficacy (NTSE) scale. 3. Teacher self-efcacy 1) Awareness of the current position of refugees and migrants in the educational system of the host country, and understanding the importance of education for the emancipation and social integration of refugees and migrants 2) Basic expertise as a teacher of a second language (of the host country) for newcomers and ability to teach in a multilingual context 3) The ability to provide subject education in a diverse class adapted to the educational needs of pupils, in a culturally sensitive manner 4) The ability to develop or adapt culturally sensitive lesson material/curriculum 5) An understanding of how to facilitate a safe educational environment for displaced young people (newcomers), with special attention to observing and reacting to trauma and referring to professional aid workers 6) Awareness of how to involve immigrant parents 7) A basic background knowledge and ability to find in-depth details about migration in the host country: common origins of migrants; political and social situation of the countries of origin and internal diversity in these countries; cultural background of main migrant groups and internal diversity of them; national and international legal framework (e.g., UN resolution); and legal regulations and constraints affecting migrants. What organizations are involved with the reception of newcomers? How is reception education organized? What is the legal framework? 8) Awareness of specific challenges newcomers face and ability to act upon this within the class, school, and local environment (e.g., displacement, lack of insight into expectations and settings of educational system taken for granted by locals, language barrier, social networks and isolation, and perceived discrimination in support, trust, challenges of host culture) 9) Awareness and ability to acknowledge the importance of community collaboration and co-creation in education in the context of newcomers’ education Source: SIREE (2021, p. 93–94) and Sklad et al. (2021). 7) A basic background knowledge and ability to find in-depth details about migration in the host country: common origins of migrants; political and social situation of the countries of origin and internal diversity in these countries; cultural background of main migrant groups and internal diversity of them; national and international legal framework (e.g., UN resolution); and legal regulations and constraints affecting migrants. What organizations are involved with the reception of newcomers? How is reception education organized? What is the legal framework? 4.1. Development of the measurement tool First, the initial domain of competences was established by a systematic literature review utilizing predefined keyword searches on Educational Resources Information Center (ERIC) and PsycINFO databases, which revealed 19 publications meeting the inclusion criteria, released after 2000, and discussing challenges faced by refugee students and the teachers’ competences required to overcome them. To confirm the relevance of the established domain in the context of the Netherlands, Belgium, and the UK, a string of small-scale empirical research was conducted, consisting of a selective inductive content analysis based on meaningful phrases related to the teacher’s competence, as found in: (a) standardized moderator reports from learning communities meetings at 20 locations across these three countries, with 2– 8 meetings at each location bringing together refugee parents, students, and teachers, (b) a focus group interview with seven teachers experienced in educating newcomers in the Netherlands, (c) a series of 12 interviews with stakeholders involved in refugee education, and (d) a small survey study of 17 Dutch teachers from ethnically diverse schools, which receive interns seeking to gain experience in newcomer education (SIREE, 2021; Sklad et al., 2021). 4.2. Design To test the validity and internal consistency, several tests were conducted. First, an exploratory factor analysis of the NTSE items was conducted, followed by correlational analyses to establish convergent and criterion validities, and finally, teachers who took part in newcomer education courses were compared to the control group in their results on the NTSE. 8) Awareness of specific challenges newcomers face and ability to act upon this within the class, school, and local environment (e.g., displacement, lack of insight into expectations and settings of educational system taken for granted by locals, language barrier, social networks and isolation, and perceived discrimination in support, trust, challenges of host culture) 9) Awareness and ability to acknowledge the importance of community collaboration and co-creation in education in the context of newcomers’ education 3. Teacher self-efcacy Finally, following Bandura’s guidelines for constructing self-efficacy scales (Bandura, 2006), 18 items of the scale corresponding to the identified competences were then constructed with the use of the Delphi method to assure face validity. 1) Awareness of the current position of refugees and migrants in the educational system of the host country, and understanding the importance of education for the emancipation and social integration of refugees and migrants 2) Basic expertise as a teacher of a second language (of the host country) for newcomers and ability to teach in a multilingual context 3) The ability to provide subject education in a diverse class adapted to the educational needs of pupils, in a culturally sensitive manner 4) The ability to develop or adapt culturally sensitive lesson material/curriculum 5) An understanding of how to facilitate a safe educational environment for displaced young people (newcomers), with special attention to observing and reacting to trauma and referring to professional aid workers 6) Awareness of how to involve immigrant parents 7) A basic background knowledge and ability to find in-depth details about migration in the host country: common origins of migrants; political and social situation of the countries of origin and internal diversity in these countries; cultural background of main migrant groups and internal diversity of them; national and international legal framework (e.g., UN resolution); and legal regulations and constraints affecting migrants. What organizations are involved with the reception of newcomers? How is reception education organized? What is the legal framework? 8) Awareness of specific challenges newcomers face and ability to act upon this within the class, school, and local environment (e.g., displacement, lack of insight into expectations and settings of educational system taken for granted by locals, language barrier, social networks and isolation, and perceived discrimination in support, trust, challenges of host culture) 9) Awareness and ability to acknowledge the importance of community collaboration and co-creation in education in the context of newcomers’ education Source: SIREE (2021, p. 93–94) and Sklad et al. (2021). Frontiers in Education 4.3. Participants At three different teacher education institutions in Belgium and the Netherlands: In Holland, Hogeschool Utrecht, and VIVES, 154 students completed the NTSE scale. In addition, all participants filled in pre-existing validated scales measuring a related construct: the Culturally Responsive Teaching Self- Efficacy Scale (CRTSE; Siwatu, 2007). In general, 42 teachers and prospective teachers from both countries who completed the scales also took the newcomers’ education learning modules, utilizing the nine objectives before completing the self-efficacy instruments. For 19 of the teachers from the Netherlands, we were in possession of the data grading rubrics in which their course work was evaluated with respect to the degree to which it demonstrated mastery of the nine competences constituting the foundation of the measure and learning objectives of the course. Source: SIREE (2021, p. 93–94) and Sklad et al. (2021). large-scale quantitative studies and applicable across different institutional and national contexts. 4.4. Measures The NTSE scale consisted of 18 self-report items measuring self-efficacy in the domain of newcomer education. For each of the 18 items, respondents were asked to rate their confidence in their ability in a given area on a scale ranging from 0 (no confidence at all) to 100 (complete confidence). For the item wording, consult Table 2. The CRTSE (Siwatu, 2007) is a 40-item Likert-type scale that measures the self-efficacy of pre-service teachers in executing teaching practices adopted by culturally responsive teachers. It captures part of the construct of interest of NTSE, particularly the domain related to cultural competence. Frontiers in Education 05 frontiersin.org Sklad 10.3389/feduc.2023.1165746 p , g y M S Item total correlation Alpha if item deleted 1. To assess the barriers newcomers encounter and impact on the education they receive 65.46 18.63 0.765 0.968 2. To find in-depth information about the origin of children with a migration background 66.05 18.82 0.749 0.968 3. To gain in-depth knowledge about the cultural background of children with a migration background 67.07 18.30 0.742 0.968 4. To find information on a national and international legal framework, legal regulations and restrictions that affect children with a migrant background in my class 57.14 24.32 0.678 0.969 5. To act upon specific challenges newcomers face in school (e.g., displacement, lack of understanding of the expectations and settings of the education system, social networks and isolation, perceived discrimination in support, trust, challenges of the host culture, etc.) 64.11 20.99 0.860 0.967 6. To ensure that newcomer children can adopt Dutch as fast as possible 65.59 21.65 0.793 0.967 7. Ensure that a non-native speaking newcomer can understand the lesson topic, even if their knowledge of host language is limited 66.97 20.96 0.869 0.966 8. To teach a non-native newcomer student the host language 70.10 20.96 0.806 0.967 9. Convey lesson-related knowledge to a diverse classroom and meet students’ diverse needs 70.39 20.23 0.791 0.968 10. To take into account different cultural backgrounds of children in my class 74.44 16.62 0.735 0.968 11. To adapt class to taking into educational needs of diverse pupils in a culturally sensitive manner 67.53 19.42 0.813 0.967 12. Developing culturally sensitive teaching materials or adapting the curriculum in a culturally sensitive manner. 61.71 22.37 0.739 0.968 13. To offer newcomer children a (psychologically) safe learning environment 75.36 18.61 0.826 0.967 14. 5.1. Factorizability The minimum amount of data for factor analysis was satisfied (Barrett and Kline, 1981) with a final sample size of 152 (using list-wise deletion), providing a ratio of 8.44 cases per variable. The factorability of the NTSE items was confirmed by several criteria. 5. Results Meeting the learning objectives was measured by a behavioral rubric, applied during the courses on the newcomer’s education course by the instructors to evaluate whether the work of the students demonstrated the mastery of each of the nine learning objectives. 4.4. Measures To support the psychological wellbeing of newcomers who speak a foreign language 69.97 20.52 0.788 0.968 15. To involve parents of foreign-speaking newcomers in activities at school 66.41 20.57 0.821 0.967 16. To encourage cooperation between parents of newcomers who speak a foreign language and the school through co-creation 61.41 22.98 0.790 0.968 17. To involve parents of non-native speaking newcomers in their children’s school life and homework 65.03 21.22 0.839 0.967 18. To overcome the language barrier in contact with parents of newcomers who speak a foreign language 66.51 21.22 0.795 0.967 5.2. Convergent validity A principal component analysis was used. An exploratory factor analysis revealed the unidimensionality of the NTSE. Initial eigenvalues indicated that the first four factors explained 66, 7, 5, and 5% of the variance, respectively. The second factor had an eigenvalue of just over one (1.2) and explained only 7% of the variance. Solutions for two and four components, using varimax and oblimin rotations, were inspected. A unidimensional solution was preferred because eigenvalues “leveled off” after the first component, which explained the majority of items’ variance. The NTSE scale showed good convergent construct validity. It had a strong statistically significant correlation with the CRTSE score (Siwatu, 2007): r = 0.838, p < 0.001. The criterion validity of the scale was further confirmed by the data from participants who participated in the academic course module preparing them for teaching newcomer children. The NTSE score correlated well with the number of learning objectives demonstrated by students’ work with r = 0.53, p = 0.01. The score was particularly well-related to demonstrating competency in working with parents, facilitating a safe educational environment, and teaching language and awareness of community collaboration. At the same time, scores were not substantially correlated with demonstrating awareness and knowledge of position, challenges of migrants, and migration in the host country, nor demonstrating the capacity to provide subject classes in a culturally sensitive way (see Table 5). The instrument showed outstanding internal consistency. The internal consistency of the scale was examined using Cronbach’s alpha. The alpha was excellent, at 0.97, and no increases in alpha could have been achieved by removing any of the 18 items (Table 2). The composite score was created as the average of the items, with higher scores indicating more self-efficacy, with the theoretical maximum score of 100 corresponding to perfect confidence in one’s capacity and a score of 0 corresponding to an absolute lack of it. Finally, to further confirm criterion validity and establish if NTSE can be used to evaluate the effectiveness of interventions, scores from 42 participants who took the newcomers’ teachers’ education course module were compared on their NTSE scores to those of control participants. In addition to the presence of the course, the institutional context was taken into account, as the newcomer’s education module provided to participants in Belgium was shorter and had a narrower scope than the one offered in the Netherlands. 4.5. Procedure All items correlated at least 0.4 with all other items. The Kaiser– Meyer–Olkin measure of sampling adequacy was 0.93, well above the recommended value of 0.6. Moreover, Bartlett’s test of sphericity was significant [Chi2(153) = 3189.51, p < 0.001]. For each variable, the communalities were above 0.7, thus confirming that each item shared a common variance (see Table 2), and measures of sampling Participating teachers (in education) completed the self-efficacy scales at their convenience using an online questionnaire; the link was provided to them by their instructors. A standard protocol for administering the questionnaire was used. Frontiers in Education 06 frontiersin.org Sklad 10.3389/feduc.2023.1165746 TABLE 3 Decile scores of NTSE scores in the test sample. TABLE 5 Correlations of NTSE score with demonstrating mastery of general learning objectives of the newcomers’ education course. Decile Score 1 44.22 2 56.33 3 60.90 4 62.50 5 65.00 6 68.47 7 72.72 8 75.83 9 77.78 General learning objective r GLO1: Is aware of the current position of refugees and migrants in the educational system of the host country and understands the importance of education for the emancipation and social integration of refugees and migrants 0.028 GLO2: Is aware of specific challenges newcomers face and is able to act upon this within the class, school and local environment 0.008 GLO3: Is aware and acknowledges the importance of community collaboration and co-creation in education in the context 0.481∗ GLO4: Knows how to facilitate safe educational environment for displaced young people (newcomers), with special attention to observing and reacting to trauma and referring to professional aid workers 0.469∗ GLO5: Has the basic background knowledge of and is able to find in-depth knowledge of migration in the host country: common origins of migrants; political and social situation of the countries of origin and internal diversity in these countries, cultural b −0.074 GLO6: Knows how to involve immigrant parents in the co-creation 0.565∗∗ GLO7: Is able to provide subject education in diverse class adapted to educational needs of pupils in a culturally-sensitive manner −0.098 GLO8: Is able to develop or adapt culturally-sensitive lesson material/curriculum 0.305 GLO9: has a basic expertise as a teacher of second language (of the host country) for newcomers and is able teach in a multilingual context 0.545∗∗ Number of satisfactory demonstrated learning objectives 0.527∗ ∗p < 0.05, ∗∗p < 0.001. TABLE 4 Descriptive statistics for the NTSE scale (N = 152). Statistic S.E. 4.5. Procedure Mean 66.58 1.31 Median 68.06 Standard deviation 16.52 Skewness −0.93 0.19 Kurtosis 1.11 0.38 ∗p < 0.05, ∗∗p < 0.001. adequacy were above 0.87 for each of them. In light of the above, all 18 items were considered suitable for factor analysis. Frontiers in Education Bandura, A. (1977). Self-efficacy: toward a unifying theory of behavioral change. Psychol. Rev. 84, 191–215. doi: 10.1037/0033-295X.84.2.191 Bandura, A. (1986). Social Foundations of Thought and Action: A Social Cognitive Theory. Englewood Cliffs, NJ: Prentice-Hall. Bandura, A. (1997). Self-Efficacy: The Exercise of Control. New York, NY: Freeman. Funding The original study was partially funded by the SIREE project within the Interreg 2 Seas Program 2014–2020 co-funded by the European Regional Development Fund under subsidy contract no. SIREE 2S03-035. Conflict of interest The author declares that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest. The above study was carried out in the Netherlands and Belgium with input from the UK in the context of the second decade of the 21st century, which determines the characteristics of school systems, teachers, and the refugees with whom they work. We do not know to what extent the findings are generalizable to different countries and time frames. Therefore, further international research should be carried out both for the sake of generalizability as well as to allow for international comparisons of teachers’ self-efficacy in the domain of supporting the education and wellbeing of displaced and newcomer children. Data availability statement The raw data supporting the conclusions of this article will be made available by the authors, without undue reservation. Belgium Netherlands M S N M S N Control 63.50 15.66 53 63.34 18.24 65 Intervention 67.95 9.96 15 79.69 8.40 27 Belgium Netherlands M S N M S N Control 63.50 15.66 53 63.34 18.24 65 Intervention 67.95 9.96 15 79.69 8.40 27 6. Discussion The author would like to thank and acknowledge: Ria Goedhart, Miranda Poeze, Stefan Dewitte, Els, Vanobberghen, and Anne Eikelboom for their contributions to the development of the learning objectives, for developing and teaching teacher education modules used in this study, for providing support with the data collection, and for consulting the items of the NTSE scale; Lianne Van der Looij for her contribution to the review of barriers and competences; Margje Camps and Isa Boere for their editorial support; and all the members of the SIREE project team for supporting the process in multiple ways. The study proposed a scale to measure teachers’ self- efficacy in the domain of teaching and supporting the wellbeing of refugee children meant for practicing and pre- service teachers, which is very relevant for teachers in many countries at this time. Correlations with other self-efficacy indicators and behavioral measures supported the validity of the scale. The scale showed good psychometric properties and internal consistency, which were further supported by its unidimensionality, despite the broad domain of competence it encompasses. We assured that all relevant competence aspects were represented in the scale, which makes this a valuable tool for future researchers interested in measuring the construct as pre-existing tools (e.g., Siwatu, 2007) focused only on specific parts of this domain. 5.2. Convergent validity The score distribution (see Table 3) was slightly negatively skewed leptokurtic. Descriptive statistics are presented in Table 4. The skewness and kurtosis were well within a tolerable range, and assuming a normal distribution, an examination of the histograms suggested that the distribution was approximately normal. An approximately normal distribution was evident for the composite score data in the current study; thus, the scale is well-suited for parametric statistical analyses. Frontiers in Education 07 frontiersin.org 10.3389/feduc.2023.1165746 Sklad TABLE 6 Means and standard deviations of NTSE score among teachers participating in the newcomers’ education modules and control groups in the Netherlands and Belgium. Publisher’s note All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher. Author contributions The author confirms being the sole contributor of this work and has approved it for publication. There was a significant main effect of participating in the module on the NTSE score, F(1,153) = 13.13, p < 0.001, eta2= 0.08. There was also a significant interaction between the intervention effect and the country, F(1,153) = 13.13, p < 0.05, eta2= 0.03. In the control condition, teachers in preparation did not differ between the countries. However, the teachers from the Netherlands who took part in the more extensive educational module showed a greater increase in their NTSE score than their Belgian counterparts who participated in a less extensive module (see Table 6). Alptekin, C. (2002). Towards intercultural communicative competence in ELT. ELT J. 56, 57–64. doi: 10.1093/elt/56.1.57 Asad, A. L., and Kay, T. (2015). Toward a multidimensional understanding of culture for health interventions. Soc. Sci. Med. 144, 79–87. doi: 10.1016/j.socscimed.2015.09.013 Alptekin, C. (2002). Towards intercultural communicative competence in ELT. ELT J. 56, 57–64. doi: 10.1093/elt/56.1.57 Asad, A. L., and Kay, T. (2015). Toward a multidimensional understanding of culture for health interventions. Soc. Sci. Med. 144, 79–87. doi: 10.1016/j.socscimed.2015.09.013 References Topics in Immigrant Education 1. Washington, DC: Center for Applied Linguistics. Denessen, E. J. P. G., Bakker, J. T. A., Kloppenburg, H. L., and Kerkhof, M. (2010). Teacher-parent partnerships: preservice teacher competences and attitudes during teacher training in the Netherlands. Int. J. Parents Educ. 3, 29–36. Available online at: https://hdl.handle.net/2066/90375 McBrien, J. L. (2005). Educational needs and barriers for refugee students in the United States: a review of the literature, Rev. Educ. Res. 75, 329–364. doi: 10.3102/00346543075003329 Milner, H. R. (2011). Culturally relevant pedagogy in a diverse urban classroom. Urban Rev. 43, 66–89. doi: 10.1007/s11256-009-0143-0 Dooley, T. (2017). Education Uprooted: For Every Migrant, Refugee and Displaced Child, Education. New York, NY: UNICEF. Peeler, E., and Jane, B. (2005). Efficacy and identification of professional self. Acad. Exchange Quart. 9, 224–228. Dryden-Peterson, S. (2017). Refugee education: EDUCATION for an unknowable future. Curric. Inquiry 47, 14–24. doi: 10.1080/03626784.2016.1255935 Peko, A., Sablic, M., and Jindra, R. (2010). “Intercultural education,” in Proceedings of the 2nd International Scientific Conference - Obrazovanje za interkulturalizam: Zbornik radova S. 2 Medunarodne znanstvene konferencije. Online Submission. Croatia: Josip Juraj Strossmayer University of Osijek. Dutch Inspectorate of Education. (2020). The State of Education in the Netherlands 2020. Available online at: https://english.onderwijsinspectie.nl/documents/annual- reports/2020/04/22/the-state-of-education-in-the-netherlands-2020 (accessed May 12, 2023). Petersen, K. B. (2017). Preparation of student teachers for multicultural classrooms: reflections on the danish teacher education curriculum. J. Int. Soc. Teach. Educ. 21, 45–54. Eurostat (2021). 8% of the Children in the EU Are Non-National. Available online at: https://ec.europa.eu/eurostat/web/products-eurostat-news/-/edn-20211217-1 (accessed April 29, 2022). Pinson, H., and Arnot, M. (2007). Sociology of education and the wasteland of refugee education research. Br. J. Sociol. Educ. 28, 399–407. doi: 10.1080/01425690701253612 Eurostat (2022). Children in Migration - Asylum Applicants. Available online at: https://ec.europa.eu/eurostat/statistics-explained/index.php?title=Children_in_ migration_-_asylum_applicants (accessed April 29, 2022). Portes, A., and Rumbaut, R. G. (2001). Legacies: The Story of the Immigrant Second Generation. Berkeley: University of California Press. Eurostat. (2023). Population by Educational Attainment Level, Sex, Age and Country of Birth (%). Available online at: https://ec.europa.eu/eurostat/databrowser/view/ EDAT_LFS_9912__custom_6183047/default/table?lang=en (accessed May 12, 2023). Rah, Y., Choi, S., and Nguyên, T. S. T. (2009). Building bridges between refugee parents and schools. Int. J. Leadersh. Educ. 12, 347–365. doi: 10.1080/13603120802609867 Evans, K., Oliveira, G., Hason III, R. G., Crea, T. M., Neville, S. E., and Fitchett, V. (2022). Unaccompanied children’s education in the United States: Service provider’s perspective on challenges and support strategies. Cultura, Educación y Sociedad. 13, 193–218. References Alptekin, C. (2002). Towards intercultural communicative competence in ELT. ELT J. 56, 57–64. doi: 10.1093/elt/56.1.57 Frontiers in Education 08 frontiersin.org Sklad 10.3389/feduc.2023.1165746 10.3389/feduc.2023.1165746 Bandura, A. (2006). “Guide for constructing self-efficacy scales,” in Self-Efficacy Beliefs of Adolescents, Vol. 5, eds F. Pajares and T. Urdan (Information Age Publishing), 307–337. Gözpinar, H. (2019). Challenges and experiences Of EFI teachers and newly arrived refugee students: an ethnographic study in Turkey. MIER J. Educ. Stud. Pract. Educational Studies, Trends & Practices 9, 147–164. Gözpinar, H. (2019). Challenges and experiences Of EFI teachers and newly arrived refugee students: an ethnographic study in Turkey. MIER J. Educ. Stud. Pract. Educational Studies, Trends & Practices 9, 147–164. Barrett, P. T., and Kline, P. (1981). The observation to variable ratio in factor analysis. Pers. Study Group Behav. Personality Study & Group Behaviour. 1, 23–33. Guyton, E. M., and Wesche, M. V. (2005). The multicultural efficacy scale: development, item selection, and reliability. Multicult. Perspect. 7, 21–29. doi: 10.1207/s15327892mcp0704_4 Bennouna, C., Brumbaum, H., McLay, M. M., Allaf, C., Wessells, M., and Stark, L. (2021). The role of culturally responsive social and emotional learning in supporting refugee inclusion and belonging: a thematic analysis of service provider perspectives. PLoS ONE 16, e0256743. doi: 10.1371/journal.pone.0256743 Hek, R. (2005). The role of education in the settlement of young refugees in the UK: the experiences of young refugees. Pract. Soc. Work Action 17, 151–171. doi: 10.1080/09503150500285115 Bennouna, C., Stark, L., and Wessells, M. G. (2020). “Children and adolescents in conflict and displacement,” in Child, Adolescent and Family Refugee Mental Health (Cham: Springer), 17–36. doi: 10.1007/978-3-030-45278-0_2 Hos, R., and Kaplan-Wolff, B. (2020). On and offscript: a teacher’s adaptation of mandated curriculum for refugee newcomers in an era of standardization. J. Curric. Teach. 9, 40–54. doi: 10.5430/jct.v9n1p40 Kanu, Y. (2008). Educational needs and barriers for African refugee students in Manitoba. Canad. J. Educ. 31, 915–940. Bloch, A., Chimienti, M., Counilh, A. L., Hirsch, S., Tattolo, G., Ossipow, L., et al. (2015). The Children of Refugees in Europe: Aspirations, Social and Economic Lives, Identity and Transnational Linkages. Geneva: Centre de recherches sociales (CERES). Karabenick, S. A., and Clemens Noda, P. A. (2004). Professional development implications of teachers’ beliefs and attitudes toward English language learners. Biling. Res. J. 28, 55–75. doi: 10.1080/15235882.2004.10162612 Caprara, G. V., Barbaranelli, C., Steca, P., and Malone, P. S. (2006). References Teachers’ self- efficacy beliefs as determinants of job satisfaction and students’ academic achievement: a study at the school level. J. Sch. Psychol. 44, 473–490. doi: 10.1016/j.jsp.2006.09.001 Kim, K. R., and Seo, E. H. (2018). The relationship between teacher efficacy and students’ academic achievement: a meta-analysis. Soc. Behav. Pers. Int. J. 46, 529–540. doi: 10.2224/sbp.6554 Caprara, G. V., Vecchione, M., Alessandri, G., Gerbino, M., and Barbaranelli, C. (2011). The contribution of personality traits and self-efficacy beliefs to academic achievement: a longitudinal study. Br. J. Educ. Psychol. 81, 78–96. doi: 10.1348/2044-8279.002004 Kirova, A. (2001). Loneliness in immigrant children: implications for classroom practice. Childh. Educ. 77, 260–267. doi: 10.1080/00094056.2001.10521648 Caprara, G. V., Vecchione, M., Capanna, C., and Mebane, M. (2009). Perceived political self-efficacy: theory, assessment, and applications. Eur. J. Soc. Psychol. 39, 1002–1020. doi: 10.1002/ejsp.604 Klassen, R. M., and Tze, V. M. (2014). Teachers’ self-efficacy, personality, and teaching effectiveness: a meta-analysis. Educ. Res. Rev. 12, 59–76. doi: 10.1016/j.edurev.2014.06.001 Castro-Olivo, S. M., and Merrell, K. W. (2012). Validating cultural adaptations of a school-based social-emotional learning programme for use with Latino immigrant adolescents. Adv. Sch. Ment. Health Promot. 5, 78–92. doi: 10.1080/1754730X.2012.689193 Knoblauch, D., and Hoy, A. W. (2008). “Maybe I can teach those kids.” The influence of contextual factors on student teachers’ efficacy beliefs. Teach. Teach. Educ. 24, 166–179. doi: 10.1016/j.tate.2007.05.005 Kopish, M. A. (2016). Preparing globally competent teacher candidates through cross-cultural experiential learning. J. Soc. Stud. Educ. Res. 7, 75–108. Cerna, L., Brussino, O., and Mezzanotte, C. (2021). The Resilience of Students with an Immigrant Background: an Update with PISA 2018. OECD Education Working Paper No. 261. Paris: Publishing. Leeman, Y., and van Koeven, E. (2019). New immigrants. An incentive for intercultural education? Educ. Inquiry 10, 189–207. doi: 10.1080/20004508.2018.1541675 Crul, M., Keskiner, E., Schneider, J., Lelie, F., and Ghaeminia, S. (2016). No Lost Generation? Education for Refugee Children. A Comparison Between Sweden, Germany, The Netherlands and Turkey. The Integration of Migrants and refugees. Florence: European University Institute. Levi, T. K. (2019). Preparing pre-service teachers to support children with refugee experiences. Alberta J. Educ. Res. 65, 285–304. doi: 10.11575/ajer.v65i4. 56554 d’Abreu, A., Castro-Olivo, S., and Ura, S. K. (2019). Understanding the role of acculturative stress on refugee youth mental health: a systematic review and ecological approach to assessment and intervention. Sch. Psychol. Int. 40, 107–127. doi: 10.1177/0143034318822688 Lucas, T. (1997). Into, Through, and Beyond Secondary School: Critical Transitions for Immigrant Youths. References doi: 10.17981/cultedusoc.13.1.2022.12 Romijn, B. R., Slot, P. L., Leseman, P. P., and Pagani, V. (2020). Teachers’ self-efficacy and intercultural classroom practices in diverse classroom contexts: a cross-national comparison. Int. J. Intercult. Relat. 79, 58–70. doi: 10.1016/j.ijintrel.2020.08.001 Gandarilla Ocampo, M., Bennouna, C., Seff, I., Wessells, M., Robinson, M. V., Allaf, C., et al. (2022). We are here for the future of our kids: parental involvement in refugee adolescents’ educational endeavours in the United States. J. Refug. Stud. 34, 4300–4321. doi: 10.1093/jrs/feaa106 Gandarilla Ocampo, M., Bennouna, C., Seff, I., Wessells, M., Robinson, M. V., Allaf, C., et al. (2022). We are here for the future of our kids: parental involvement in refugee adolescents’ educational endeavours in the United States. J. Refug. Stud. 34, 4300–4321. doi: 10.1093/jrs/feaa106 Roxas, K. (2010). Who really wants “the poor, the tired, and the huddled masses” anyway? Teachers’ use of cultural scripts with refugee students in public school classrooms. Multicult. Perspect. 12, 1–9. Goddard, R. D., Hoy, W. K., and Hoy, A. W. (2000). Collective teacher efficacy: its meaning, measure, and impact on student achievement. Am. Educ. Res. J. 37, 479–507. doi: 10.3102/00028312037002479 Goddard, R. D., Hoy, W. K., and Hoy, A. W. (2000). Collective teacher efficacy: its meaning, measure, and impact on student achievement. Am. Educ. Res. J. 37, 479–507. doi: 10.3102/00028312037002479 Roxas, K. (2011). Tales from the front line: teachers’ responses to Somali Bantu refugee students. Urban Educ. 46, 513–548. doi: 10.1177/0042085910377856 SIREE (2021). Social Integration of Refugees through Education and Self- Employment. SIRE. Available online at: https://www.siree.eu/post/read-about-the- siree-project-through-our-ebook (accessed December 09, 2021). Goodwin, L. (2002). Teacher preparation and the education of immigrant children. Educ. Urban Soc. 34, 156–172 doi: 10.1177/0013124502034002003 Goodwin, L. (2002). Teacher preparation and the education of immigrant children. Educ. Urban Soc. 34, 156–172 doi: 10.1177/0013124502034002003 Frontiers in Education 09 frontiersin.org 10.3389/feduc.2023.1165746 Sklad Siwatu, K. O. (2007). Preservice teachers’ culturally responsive teaching self-efficacy and outcome expectancy beliefs. Teach. Educ. 23, 1086–1101. doi: 10.1016/j.tate.2006.07.011 Trueba, H. T., Jacobs, L., and Kirton, E. (1990). Cultural Conflict and Adaptation: The Case of Hmong Children in American Society. New York, NY: Falmer Press. Trueba, H. T., Jacobs, L., and Kirton, E. (1990). Cultural Conflict and Adaptation: The Case of Hmong Children in American Society. New York, NY: Falmer Press. Tschannen-Moran, M., and Hoy, A. W. (2007). The differential antecedents of self-efficacy beliefs of novice and experienced teachers. Teach. Teach. Educ. 23, 944–956. doi: 10.1016/j.tate.2006. References 05.003 Sklad, M., Goedhart, R., Van der Looij, L., Camps, M., Vanobberghen, E., and Dewitte, S. (2021). Teacher Training Modules Education For Newcomers – Demonstration Guide. SIREE.EU. Available online at: https://www.siree.eu/post/learn- about-our-teacher-training-courses (accessed December 09, 2021). Ukasoanya, G. (2014). Social adaptation of new immigrant students: cultural scripts, roles, and symbolic interactionism. Int. J. Adv. Counsell. 36, 150–161. doi: 10.1007/s.10447-013-9195-7 Sleeter, C. E. (2001). Preparing teachers for culturally diverse schools: research and the overwhelming presence of Whiteness. J. Teach. Educ. 52, 94–106. doi: 10.1177/0022487101052002002 UN News. (2022). Global Perspective Human Stories. Retrieved from: https://news. un.org/en/story/2022/06/1120642 (accessed May 12, 2023). Southern, N. L. (2007). Mentoring for transformative learning: the importance of relationship in creating learning communities of care. J. Transform. Educ. 5, 329–338. doi: 10.1177/1541344607310576 UNICEF (1989). Convention on the Rights of the Child. Available online at: https:// www.unicef.org/childrights-Convention (accessed May 05, 2023). Stark, L., Robinson, M. V., Gillespie, A., Aldrich, J., Hassan, W., Wessells, M., et al. (2021). Supporting mental health and psychosocial wellbeing through social and emotional learning: a participatory study of conflict-affected youth resettled to the US. BMC Public Health 21, 1620. doi: 10.1186/s12889-021-11674-z Vrdoljak, A., Stankovi´c, N., Corkalo Biruški, D., Jeli´c, M., Fasel, R., and Butera, F. (2022). “We would love to, but...” - needs in school integration from the perspective of refugee children, their parents, peers, and school staff. Int. J. Qualit. Stud. Educ. 1–18. doi: 10.1080/09518398.2022.2061732 Stevenson, J., and Willott, J. (2007). The aspiration and access to higher education of teenage refugees in the UK. Compare 37, 671–687. doi: 10.1080/03057920701582624 Walker-Dalhouse, D., Sanders, V., and Dalhouse, A. D. (2009). A university and middle-school partnership: preservice teachers’ attitudes toward ELL students. Literacy Res. Instruct. 48, 337–349. doi: 10.1080/19388070802422423 Strekalova, E., and Hoot, J. (2008). What is special about special needs of refugee children? Multicult. Educ. 16, 21–24. Walsh, C. S., and Townsin, L. (2015). A New Border Pedagogy to Foster Intercultural Competence to Meet the Global Challenges of the Future. Western: Australian Association for Research in Education. Svensson, M. (2019). Compensating for conflicting policy goals: Dilemmas of teachers’ work with asylum-seeking children in Sweden. Scand. J. Educ. Res. 63, 1–16. Zins, J. E., and Elias, M. J. (2006). “Social and emotional learning,” in Children’s Needs III: Development, Prevention, and Intervention, eds G. G. Bear and K. M. Minke (Bethesda, MD: NASP Publications), 1–13. Szente, J., Hoot, J., and Taylor, D. (2006). References Responding to the special needs of refugee children: practical ideas for teachers. Early Childh. Educ. J. 34, 15–20. doi: 10.1007/s10643-006-0082-2 10 Frontiers in Education Frontiers in Education frontiersin.org 10
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Is high-frequency oscillatory ventilation more effective and safer than conventional protective ventilation in adult acute respiratory distress syndrome patients? A meta-analysis of randomized controlled trials
Critical care
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6,858
RESEARCH Open Access Abstract Introduction: Comprehensively evaluating the efficacy and safety of high-frequency oscillatory ventilation (HFOV) is important to allow clinicians who are using or considering this intervention to make appropriate decisions. Methods: To find randomized controlled trials (RCTs) comparing HFOV with conventional mechanical ventilation (CMV) as an initial treatment for adult ARDS patients, we searched electronic databases (including PubMed, MedLine, Springer Link, Elsevier Science Direct, ISI web of knowledge, and EMBASE) with the following terms: “acute respiratory distress syndrome”, “acute lung injury”, and “high frequency oscillation ventilation”. Additional sources included reference lists from the identified primary studies and relevant meta-analyses. Two investigators independently screened articles and extracted data. Meta-analysis was conducted using random-effects models. Results: We included 6 RCTs with a total of 1,608 patients in this meta-analysis. Compared with CMV, HFOV did not significantly reduce the mortality at 30 or 28 days. The pooled relative risk (RR) was 1.051 (95% confidence interval (CI) 0.813 to 1.358). ICU mortality was also not significantly reduced in HFOV group, with a pooled RR of 1.218 (95% CI 0.925 to 1.604). The pooled effect sizes of HFOV for oxygenation failure, ventilation failure and duration of mechanical ventilation were 0.557 (95% CI 0.351 to 0.884), 0.892 (95% CI 0.435 to 1.829) and 0.079 (95% CI −0.045 to 0.203), respectively. The risk of barotrauma and hypotension were similar between the CMV group and HFOV group, with a RR of 1.205 (95% CI 0.834 to 1.742) and a RR of 1.326 (95% CI 0.271 to 6.476), respectively. Conclusions: Although HFOV seems not to increase the risk of barotrauma or hypotension, and reduces the risk of oxygenation failure, it does not improve survival in adult acute respiratory distress syndrome patients. ventilation can initially sustain life, it may cause further lung injury [5-8]. © 2014 Gu et al.; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. Is high-frequency oscillatory ventilation more effective and safer than conventional protective ventilation in adult acute respiratory distress syndrome patients? A meta-analysis of randomized controlled trials Xiao-ling Gu1, Guan-nan Wu1, Yan-wen Yao1, Dong-hong Shi2 and Yong Song1* * Correspondence: yong_song6310@yahoo.com 1Department of Respiratory Medicine, Jinling Hospital, Nanjing University School of Medicine, 305 East Zhongshan Road, Nanjing, Jiangsu Province 210002, P. R. China Full list of author information is available at the end of the article Gu et al. Critical Care 2014, 18:R111 http://ccforum.com/content/18/3/R111 * Correspondence: yong_song6310@yahoo.com 1Department of Respiratory Medicine, Jinling Hospital, Nanjing University School of Medicine, 305 East Zhongshan Road, Nanjing, Jiangsu Province 210002, P. R. China Full list of author information is available at the end of the article © 2014 Gu et al.; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. Introduction Both acute lung injury (ALI) and acute respiratory distress syndrome (ARDS) are life-threatening conditions that are usually associated with substantial morbidity [1,2], mortal- ity [3], and financial costs [4]. Conventional mechanical ventilation (CMV) is still considered the cornerstone of treatment for these patients. However, although mechanical To avoid ventilator-induced lung injury, lung-protective ventilation has been recommended, which focused on avoiding cyclic alveolar collapse and re-expansion, pre- venting alveolar excess distension, and achieving and maintaining alveolar recruitment [9-11]. High-frequency oscillation is an alternative mechanical ventilation method that delivers very small tidal volumes at high frequencies (3 to 15 Hz) using an oscillatory pump [12]. High- frequency oscillatory ventilation (HFOV) can not only avoid over-distension of alveoli by delivering small tidal Page 2 of 9 Gu et al. Critical Care 2014, 18:R111 http://ccforum.com/content/18/3/R111 high frequency oscillation ventilation. There were no language restrictions. This search was conducted through July 2013, with no additional time limits. The reference lists of the identified primary studies and relevant meta- analyses were also searched for additional studies. volumes but can also prevent end-expiratory alveolar collapse and maintain alveolar recruitment by applying a constant airway pressure [13-15]. Therefore, HFOV theoretically achieves all goals pursued by lung-protective ventilation strategies [11,16,17]. To be included in the present meta-analysis, studies had to be RCTs comparing HFOV with CMV, enrolling unique adult ALI/ARDS patients, and reporting at least one of the following outcomes of interest: ICU mortality; 28- or 30-day mortality; hypoxemia and ventilation failure; duration of mechanical ventilation; and the incidence of barotrauma or hypotension. All of the candidate articles were independently read and checked for the inclusion criteria by two investigators (XG and GW). Disagreements were resolved through consensus. The methodological quality of the included studies was evaluated according to the Cochrane handbook 5.1.0 for randomized controlled trials [29]. Given that blinding of physicians, patients or related family members was impossible in those trials, we compared whether rescue treatments were equally applied in the treatment group and control group, and performed quality assessment according to the following five aspects, including random sequence generation, allocation con- cealment, incomplete outcome data, selective reporting, and others. However, no more than six randomized controlled trials (RCTs) in adult ARDS patients have been published on the safety and efficacy of HFOV as an initial treatment strategy. Data extraction I f i Information was extracted independently by two investiga- tors (XG and GW) from all eligible studies. The required items included in the data form were as follows: (1) basic information about the primary study, including the first author’s name, year of publication, sample size of the study, single or multicenter design, the definition of ALI or ARDS used, and the overall risk of bias; (2) clinically relevant primary outcomes, including ICU mortality, 28- or 30-day mortality, hypoxemia (including oxygenation failure and refractory hypoxemia diagnosed in the primary eligible studies) and ventilation failure (including ventilation failure, acidosis, and refractory acidosis diagnosed in the primary eligible studies), and duration of mechanical ventilation; and (3) the incidence of barotrauma or hypotension. The lists from the two investigators were compared, and dis- agreements about the extracted data were resolved by consensus. Methods and materials Ethics statement We performed a meta-analysis of published RCTs com- paring HFOV with CMV for ALI/ARDS in unique adult patients. All analyses were based on published data extracted from the six eligible studies, which have been approved by the Institutional Review Committee on Human Research. An additional file shows this in more detail (see Additional file 1). Additionally, as described in the six primary studies, all patients (or their representatives) enrolled in these six trials have provided written informed consent before any study-related procedure was performed. Therefore, the present meta-analysis does not present any further problems in relation to ethics or conflicts of interest. Introduction Three previous trials comparing HFOV with CMV suggested that HFOV improved both oxygenation and survival in adults with ARDS [18-20], but two recent larger-scale RCTs presented different or even opposite results [21,22]. Therefore, this approach remains an unproven and controversial therapy for adults with ARDS [23-26]. Two Cochrane reviews examining the effect of HFOV on mortality in ALI/ARDS patients have been published. The earlier one found only two small RCTs and was not powerful enough to draw definitive conclusions [27]; the later study [28] concluded that HFOV might improve survival, which was not completely consistent with the conclusions of two recently published large RCTs [21,22]. Neither of the above two Cochrane reviews focused on the effect of HFOV in unique adults with ARDS. Since two large scale RCTs comparing HFOV with CMV as an initial treatment for unique adult ARDS patients have been recently published, we performed a meta-analysis of RCTs, to systematically review the efficacy and safety of HFOV in the population of adult ARDS patient compared with CMV. Statistical analyses All meta-analysis were performed by random-effects models (the DerSimoniane and Laird method). We re- ported continuous outcomes using standardized mean differences with the 95% CI, and binary outcomes were presented as relative risk with the 95% CI. The Z-test and chi-square test were used to generate the P-value for the continuous outcomes and for the binary outcomes, re- spectively. P <0.05 was considered statistically significant. Literature search and identification of the publications To identify all published RCTs comparing HFOV with CMV in adult ARDS patients, a search of electronic databases (including PubMed, MedLine, Springer Link, Elsevier Science Direct, ISI web of knowledge, and EMBASE) was carried out with the following terms: acute respiratory distress syndrome; acute lung injury; Mortality at 28 or 30 days y y In the primary analysis of five trials [18,19,21,22,31] (n = 1,580), the median mortality at 30 or 28 days in the control group and the HFOV group was 41.1% (range 28.6 to 52.1%) and 40.4% (range 37.3 to 43.2%), respectively. The results of the meta-analysis suggested that HFOV did not significantly reduce mortality at 30 or 28 days in adult ARDS patients (relative risk (RR) 1.051, 95% CI 0.813, 1.358; Table 2 and Figure 2A). As significant heterogeneity was detected among the above five enrolled studies (I2 = 63.1%, P = 0.028), and considering the tidal volume and plateau airway pressure might be the sources of heterogeneity, we performed subgroup analysis strati- fied by the tidal volume (≤8 ml/kg predicted body weight) and by the plateau airway pressure (≤35 cmH2O) in the control group, respectively. The results of these subgroup analyses also suggest that HFOV failed to reduce mortality at 30 or 28 days in adult ARDS patients. These results of subgroup analysis and the related forest plot are shown in Table 2 and Figure 2A, B. Literature search and identification of the publications Page 3 of 9 Gu et al. Critical Care 2014, 18:R111 http://ccforum.com/content/18/3/R111 Gu et al. Critical Care 2014, 18:R111 http://ccforum.com/content/18/3/R111 The presence of heterogeneity between studies was tested with the chi-square-based Q-test and quantified with the I2 statistic (25 to 49% for low heterogeneity, 50 to 74% for moderate heterogeneity, and 75 to 100% for high heterogeneity) [30]. Sensitivity analysis was performed to evaluate the influence of the individual trial on the pooled effect. Potential publication bias was investigated by funnel plots and was formally evaluated with Egger’s linear regression test and Begg’s adjusted rank correlation test. All statistical analyses were performed with Stata software (version 11.0; StataCorp LP, College Station, TX, USA) using two-sided p values. P <0.05 was considered statis- tically significant. groups in four trials underwent low-tidal-volume ventila- tion (≤8 ml/kg) [20-22,31], whereas three trials performed low plateau pressure (≤35 cm H2O) [20,21,31]. Among all of the included studies, five studies with high meth- odological quality and low risk of bias passed the quality assessment [18,20-22,31], and the risk of bias in the sixth trial was unclear [19] (Table 1). ICU mortality Three eligible studies [20-22] (n = 1,371) reported ICU mortality. The median mortality in the control group and the HFOV group was 30.8% (range 26.7 to 42.1%) and 44.2% (range 30.8 to 44.7%), respectively. We performed a meta-analysis using a random-effects model, and the re- sults of this meta-analysis suggested that high-frequency oscillatory ventilation did not significantly reduce or increase the risk of death in ICU compared with con- ventional mechanical ventilation in adult ARDS patients Literature search and study characteristics Using the search term high frequency oscillatory ventila- tion combined with acute respiratory distress syndrome or with acute lung injury, 784 citations were identified. Among them, six trials [18-22,31] met the inclusion cri- teria and were enrolled in the meta-analysis. The flow chart of the identification and selection of publications is shown in Figure 1. Six eligible trials [18-22,31] enrolled a total of 1,608 adult patients with ARDS (Table 1). All trials investigated HFOV as an initial treatment for ARDS rather than as a rescue treatment after the failure of conventional venti- lation. The tested patients in most of these trials were continuously treated with HFOV for more than 24 hours, except in one trial that continuously applied high- frequency oscillation for 12 hours [20]. The control Sensitivity analysis was also analyzed, and the results demonstrated that after each study was excluded from the overall meta-analysis, similar results were obtained Figure 1 Flow chart of studies included in this meta-analysis. Figure 1 Flow chart of studies included in this meta-analysis. Figure 1 Flow chart of studies included in this meta-analysis. Figure 1 Flow chart of studies included in this meta-analysis. Gu et al. Critical Care 2014, 18:R111 http://ccforum.com/content/18/3/R111 Page 4 of 9 Page 4 of 9 Table 1 Essential characteristics of included studies First author Year Institute Patients (number) Details of ARDS Overall risk of bias HFOV CMV Derdak [18] 2002 ICUs in 13 US hospitals 75 73 ARDS; PEEP <10 cm H2O Low Shah [31] 2004 1 ICU in Cardiff, Wales 15 13 ARDS Low Bollen [19] 2005 5 ICUs in 4 European cities 37 24 ARDS Unclear (>10% (11/61) crossovers) Demory [20] 2007 1 ICU in Marseille, France 13 15 ARDS; PaO2/FiO2 ≤150, PEEP ≥5cmH2O Low Young [22] 2013 ICUs in England, Wales, and Scotland 398 397 ARDS; PaO2/FiO2 ≤200, PEEP ≥5cmH2O Low Ferguson [21] 2013 38 centers in Canada, the United States, Saudi Arabia, Chile, and India 275 273 ARDS; PaO2/FiO2 ≤200,FiO2 ≥0.5 Low ARDS, acute respiratory distress syndrome; CMV, conventional mechanical ventilation; FiO2, fraction of inspired oxygen; HFOV, high-frequency oscillatory ventilation; PaO2, arterial oxygen tension; PEEP, positive end expiratory pressure. Table 1 Essential characteristics of included studies ARDS, acute respiratory distress syndrome; CMV, conventional mechanical ventilation; FiO2, fraction of inspired oxygen; HFOV, high-frequency oscillatory ventilation; PaO2, arterial oxygen tension; PEEP, positive end expiratory pressure. (Table 3). Literature search and study characteristics No publication bias of the enrolled studies was observed (Table 4). (RR 1.218, 95% CI 0.925, 1.604; Table 2 and Figure 2C). However, the sensitivity analysis showed that a paradoxical result obtained after the OSCAR trial [22] was excluded from the overall meta-analysis, and it suggested that HFOV would significantly increase the ICU mortality in adult ARDS patients (RR 1.442, 95% CI 1.160, 1.792; Table 3). Neither Egger’s test nor Begg’s test showed any evidence of publication bias (Table 4). Oxygenation failure, ventilation failure and duration of mechanical ventilation Critical Care 2014, 18:R111 http://ccforum.com/content/18/3/R111 Table 3 Sensitivity analysis Excluded study Relative risk 95% CI Mortality at 28 or 30 days Derdak (2002) 1.164289 0.9238705, 1.4672717 Bollen (2005) 1.0212231 0.76526242, 1.3627961 Ferguson (2013) 0.94643247 0.77333957, 1.158268 Young (2013) 1.0512564 0.69253296, 1.5957943 Shah (2004) 1.0661671 0.80484247, 1.4123416 ICU mortality Demory (2007) 1.2246462 0.89132315, 1.6826202 Ferguson (2013) 1.0530359 0.89893317, 1.2335562 Young (2013) 1.4420993 1.160399, 1.7921858 Oxygenation failure Derdak (2002) 0.58428353 0.28815368, 1.1847403 Bollen (2005) 0.51638663 0.31883517, 0.83634168 Ferguson (2013) 0.82795441 0.31200156, 2.1971316 Ventilation failure Derdak (2002) 1.0543551 0.4344992, 2.5584965 Bollen (2005) 0.91356009 0.43406373, 1.9227407 Ferguson (2013) 0.64884853 0.2125513, 1.9807193 Duration of mechanical ventilation Derdak (2002) 0.09791627 −0.09584169, 0.29167423 Bollen (2005) 0.06240474 −0.06527908, 0.19008856 Young (2013) 0.15380768 −0.11983663, 0.427452 Barotrauma Shah (2004) 1.229754 0.84895152, 1.7813679 Derdak (2002) 1.3130077 0.87979519, 1.9595348 Bollen (2005) 1.1886587 0.78003234, 1.8113472 Ferguson (2013) 0.6947636 0.29700547, 1.6252108 Hypotension Derdak (2002) 2.6042271 0.44842839, 15.123928 Bollen (2005) 0.69353223 0.05379397, 8.9412804 Shah (2004) 0.89276189 0.0725222, 10.990066 treatment of mechanical ventilation. The meta-analysis of three eligible studies [18,19,21] (n = 757) that reported the incidence of oxygenation failure demonstrated HFOV significantly reduced the risk of oxygenation failure com- pared with conventional ventilation (RR 0.557, 95% CI 0.351, 0.884; Figure 2D). The result of sensitivity analysis showed HFOV would not significantly improve oxygen- ation compared with CMV, when the study of Derdak [18] or the OSCILLATE trial [21] was excluded from the over- all meta-analysis (Table 3). It suggested that the result of this meta-analysis for oxygenation failure was not stable, and that further clinical trials are needed to determine whether HFOV is more effective than CMV for the im- provement of oxygenation in adult ARDS patients. No publication bias of the enrolled studies was observed (Table 4). Three enrolled studies demonstrated the ventilation efficiency of HFOV: one study [21] reported the incidence of refractory acidosis, one [19] reported the occurrence of acidosis, and the third [18] reported the incidence of ven- tilation failure with a clear definition, that is, ‘a pH ≤7.15 for 6 hours and a bicarbonate of 19 meq/L or moreʼ. We performed a meta-analysis with a random-effects model and demonstrated that there was no significant difference in ventilation efficiency between the HFOV group and the control group (RR 0.892, 95% CI 0.435, 1.829; Figure 2E). Sensitivity analysis demonstrated that after each study was excluded from the overall meta-analysis, similar results were obtained (Table 3). Oxygenation failure, ventilation failure and duration of mechanical ventilation Oxygenation failure was defined as persisting abnormal low oxygenation index or refractory hypoxemia after the Table 2 Main results of meta-analysis of mortality Studies included (n) Case number (n) Heterogeneity Pooled RR (95% CI) P HFOV CMV I2(%) P Mortality at 28 or 30 days 5 800 780 63.1 0.028 1.051 0.704 (0.813, 1.358) Subgroup Tidal volume in control group <8 ml/kg Mandated 3 688 683 63.1 0.067 1.149 0.329 (0.869, 1.519) Not mandated 2 112 97 56.4 0.13 0.899 0.712 (0.511, 1.582) Plateau pressure in control group <35cmH2O Mandated 2 290 286 14.6 0.279 1.323 0.092 (0.955, 1.834) Not mandated 3 510 494 44.7 0.164 0.942 0.665 (0.720, -1.233) ICU mortality 3 686 685 63.3 0.066 1.218 0.160 (0.925, 1.604) CMV, conventional mechanical ventilation; HFOV, high-frequency oscillatory ventilation; n, number; RR, relative risk. Table 2 Main results of meta-analysis of mortality CMV, conventional mechanical ventilation; HFOV, high-frequency oscillatory ventilation; n, number; RR, relative risk. Page 5 of 9 Page 5 of 9 Gu et al. Critical Care 2014, 18:R111 http://ccforum.com/content/18/3/R111 Figure 2 Forest plots for the meta-analysis of mortality: (A) Meta-analysis of mortality at 28 or 30 days, and subgroup analyses stratified by the tidal volume of the conventional ventilation group (in which tidal volumes ≤8 ml/kg were used or not used). (B) Meta-analysis of mortality at 28 or 30 days, and subgroup analyses stratified by the plateau pressure of the conventional ventilation group (in which plateau pressure ≤35 cmH2O was used or not used). (C) Meta-analysis of ICU mortality. (D) Meta-analysis for oxygenation failure. (E) Meta-analysis of ventilation failure. (F) Meta-analysis for the duration of mechanical ventilation. (G) Meta-analysis of barotrauma. (H) Meta-analysis of hypotension. LPV, lung-protective ventilations. Figure 2 Forest plots for the meta-analysis of mortality: (A) Meta-analysis of mortality at 28 or 30 days, and subgroup analyses stratified by the tidal volume of the conventional ventilation group (in which tidal volumes ≤8 ml/kg were used or not used). (B) Meta-analysis of mortality at 28 or 30 days, and subgroup analyses stratified by the plateau pressure of the conventional ventilation group (in which plateau pressure ≤35 cmH2O was used or not used). (C) Meta-analysis of ICU mortality. (D) Meta-analysis for oxygenation failure. (E) Meta-analysis of ventilation failure. (F) Meta-analysis for the duration of mechanical ventilation. (G) Meta-analysis of barotrauma. (H) Meta-analysis of hypotension. LPV, lung-protective ventilations. Page 6 of 9 Gu et al. Adverse event: barotrauma eight randomized controlled trials with 419 patients, it in- cluded two studies investigating the combination effect of HFOV and additional interventions (prone positioning [34] and tracheal gas insufflation [35]), which would complicate the results of meta-analysis. Barotrauma was defined as a group of symptoms caused by the high airway pressure during mechanical ventila- tion, such as pneumothorax, pneumomediastinum, pneumopericardium, subcutaneous emphysema and so on. We performed a meta-analysis to summarize the dif- ference in the risk of barotrauma between the HFOV group and control group. Four enrolled studies provided the incidence of barotrauma, but they all applied differ- ent definitions of barotrauma: only pneumothorax [31], any pulmonary air leak [18], severe air leak resulting in treatment failure [19], or new-onset barotrauma [21]. The above four enrolled trails reported the incidence of barotrauma in the HFOV group as 0/15 [31], 7/75 [18], 1/37 [19], 46/256 [21] patients, respectively; and in the CMV group as 1/13 [31], 9/73 [18], 1/24 [19], 34/259 [21] patients, respectively. The results of the meta- analysis and the forest plot are shown in Figure 2G. The relative risk for barotrauma was 1.205 (95% CI 0.834, 1.742). This result suggests that HFOV does not increase or reduce the risk of barotrauma compared with CMV. In the sensitivity analysis, similar results were obtained after each study was excluded from the overall meta- analysis (Table 3). No publication bias of the enrolled studies was observed (Table 4). In the present meta-analysis of mortality, we showed that HFOV did not significantly reduce mortality at 30 or 28 days compared with CMV. This finding contrasts sharply with experimental studies in animals in which benefits of high-frequency oscillation were observed [36]. Our results may suggest that the benefits of HFOV cannot be translated directly from animal models to adult ARDS patients, probably because there is great heterogeneity in the recruitability of the lung [37] and because the well-controlled conditions of animal studies are often difficult to replicate in human clinical trials. Our results are also at variance with those of the latest Cochrane review of HFOV in 2013 [32], which showed HFOV significantly reduced in-hospital or 30-day mor- tality compared with conventional ventilation. This may be simply because the present meta-analysis enrolled two more large multicenter trials and recruited more than three times the number of patients recruited in the previous meta-analysis. Oxygenation failure, ventilation failure and duration of mechanical ventilation No publication bias of the en- rolled studies was observed (Table 4). Duration of mechanical ventilation Three eligible trials [18,19,22] (n = 1,004) provided the duration of mechanical ventilation. The results of meta- analysis showed that the high-frequency oscillation strategy did not significantly reduce the duration of mechanical ventilation (standardized mean difference 0.079, 95% CI −0.045, 0.203; Figure 2F). Sensitivity analysis demonstrated that after each study was excluded from the overall meta-analysis, similar results were obtained (Table 3). No publication bias of the enrolled studies was observed (Table 4). Table 4 Publication bias Type of meta-analysis Begg’s test Egger’s test z Pr > |z| t P > |t| Mortality at 28 or 30 days 0.000 1.000 −0.230 0.833 ICU mortality 0.520 0.602 0.250 0.841 Oxygenation failure 1.57 0.117 2.39 0.252 Ventilation failure −0.52 0.602 −0.73 0.597 Duration of mechanical ventilation 1.04 0.296 1.49 0.376 Barotrauma −0.68 0.497 −2.67 0.116 Hypotension −0.52 0.602 −0.62 0.646 Page 7 of 9 Page 7 of 9 Gu et al. Critical Care 2014, 18:R111 http://ccforum.com/content/18/3/R111 Adverse event: hypotension Three eligible trials (n = 237) reported the incidence of hypotension in the HFOV group as 0/75 [18], 4/37 [19], 1/15 [31] patients, respectively; and in the CMV group as 2/73 [18], 1/24 [19], 0/13 [31] patients, respectively. The results of meta-analysis demonstrated that the HFOV would not significantly increase the risk of hypotension compared with CMV (RR 1.326, 95% CI 0.271, 6.476; Figure 2H). Sensitivity analysis demonstrated that after each study was excluded from the overall meta-analysis, similar results were obtained (Table 3). No publication bias of the enrolled studies was observed (Table 4). As moderate heterogeneity was revealed in the overall meta-analysis of mortality, and considering that the tidal volume and plateau airway pressure might be the sources of heterogeneity, we performed subgroup analysis ac- cording to the tidal volume (≤8 ml/kg predicted body weight) and according to the plateau airway pressure (≤35 cmH2O) in the control group, respectively. Although the heterogeneity remained moderate after the stratifica- tion by tidal volume, the heterogeneity was significantly reduced when the data were stratified depending on the control group’s plateau airway pressure. It appears that the plateau airway pressure is one of the most possible sources of heterogeneity. The results from these subgroup ana- lyses all suggest that HFOV did not significantly reduce mortality at 30 or 28 days in adult ARDS patients. This indicates that the results of this meta-analysis are stable. Adverse event: barotrauma Our results are consistent with those of two recently published large-scale RCTs, which are known as the OSCILLATE trial [21] and OSCAR trial [22], respectively. Sensitivity analysis showed that in the meta-analysis of mortality at 30 or 28 days, after each study was excluded from the overall meta-analysis, similar results were obtained. This suggests that our results of 30- or 28-day mortality are valid. Key messages Key messages ICU mortality compared with CMV. Additionally, the beneficial effect of HFOV on mortality could have been underestimated because one study [21] enrolled 40% of the patients included in our meta-analysis of ICU mortal- ity, and in that study more than 10% of patients in the control group crossed over to receive HFOV. Thus, the result of this meta-analysis of the risk of death in ICU was not stable, and further clinical trials are needed to determine whether HFOV is as effective as CMV for the improvement of ICU survival in adult ARDS patients. ICU mortality compared with CMV. Additionally, the beneficial effect of HFOV on mortality could have been underestimated because one study [21] enrolled 40% of the patients included in our meta-analysis of ICU mortal- ity, and in that study more than 10% of patients in the control group crossed over to receive HFOV. Thus, the result of this meta-analysis of the risk of death in ICU was not stable, and further clinical trials are needed to determine whether HFOV is as effective as CMV for the improvement of ICU survival in adult ARDS patients.  In adult ARDS patients, high-frequency oscillation did not significantly reduce mortality at 30 or 28 days, or the mortality within the ICU compared with CMV.  Compared with conventional ventilation, HFOV, although having no significant effect on the incidence of ventilation failure or the duration of mechanical ventilation, significantly reduced the risk of oxygenation failure.  High-frequency oscillatory ventilation was not associated with an increased risk of barotrauma or hypotension and seemed to be as safe as conventional ventilation. The present meta-analysis showed that HFOV signifi- cantly reduced the risk of hypoxemia compared with CMV. This result is consistent with our meta-analysis of the PaO2/FiO2 ratio on day 1 which demonstrated that the application of HFOV significantly improved the PaO2/FiO2 ratio on the first day after the initiation of mechanical ventilation (data not shown). However, the sensitivity analysis showed whenever the OSCILLATE trial [21] or the study by Derdak et al. [18] was excluded, the pooled results of the other two studies suggested that HFOV did not significantly reduce the incidence of oxy- genation failure. This may be simply because the other two trials enrolled too few patients to identify a significant difference. Key messages Thus, it is still possible that the application of HFOV significantly improves oxygenation and reduces the risk of hypoxemia. Authors’ contributions All authors conceived the study and contributed to the study design. XLG and GNW performed the literature review and data extraction. YWY and DHS performed statistical analysis. GNW, DHS and YS analyzed and interpreted the data. XLG, DHS and YWY drafted the manuscript. XLG, GNW and YS were responsible for the revision of the manuscript for important intellectual content. YS supervised the study. All authors have read and approved the manuscript for submission. Competing interests There are several limitations of the present meta- analysis. First, the six enrolled studies were published between 2002 and 2013, which may have caused moder- ate heterogeneity of the control group and therefore complicated the results of this meta-analysis. Second, the sample size of the included trials ranged from 28 to 795, which could have influenced the precision of the pooled effect-estimates. Lastly, we only evaluated the effect of HFOV on the incidence of barotrauma and hypotension, therefore, the evaluation of the safety of HFOV might not be comprehensive enough. The authors declare that they have no competing interests. Conclusions The pooled analysis of the currently available data sug- gests that HFOV does not significantly reduce mortality at 30 or 28 days, nor does it reduce ICU mortality, although it seems to significantly reduce the risk of oxygenation failure in adult ARDS patients. Furthermore, HFOV has no significant effect on the incidence of ventilation failure, the duration of mechanical ventilation or the risk of baro- trauma and hypotension. Although these results suggest HFOV would not increase the incidence of barotrauma or hypotension, they do not support the recommendation that HFOV is used in routine care for adult patients with ARDS. More large-scale multicenter RCTs are required to further determine the efficacy and safety of HFOV in adult ARDS patients. Abbreviations ALI: acute lung injury; ARDS: acute respiratory distress syndrome; CMV: conventional mechanical ventilation; FiO2: fraction of inspired oxygen; HFOV: high-frequency oscillatory ventilation; PaO2: arterial oxygen tension; PEEP: positive end expiratory pressure; RCT: randomized controlled trial; RR: relative risk; SMD: standardized mean difference. Acknowledgements The present study was supported by the National Natural Scientific Foundation of China (numbers 81170064 and 81370172). The National Natural Scientific Foundation of China Grants did not directly participate in the literature search, determination of study eligibility criteria, data analysis or interpretation, or preparation, review, or approval of the manuscript for publication. Statements in the manuscript should not be construed as an endorsement by the National Natural Scientific Foundation of China. Additional file Additional file 1: The names of all ethical bodies involved in the six enrolled trials. All ethical body names involved in the six trials that were enrolled in the present meta-analysis have been listed in this file. Author details 1 1Department of Respiratory Medicine, Jinling Hospital, Nanjing University School of Medicine, 305 East Zhongshan Road, Nanjing, Jiangsu Province 210002, P. R. China. 2Department of Medical Imaging, Jinling Hospital, Nanjing University School of Medicine, 305 East Zhongshan Road, Nanjing, Jiangsu Province 210002, P. R. China. Discussion To the best of our knowledge, the present study is the first meta-analysis examining the effect of HFOV in unique adults with ARDS, although two cognate Cochrane reviews [27,32] have been published based on studies in- cluding mutually exclusive groups of patients, and the more recent one [32] combined the results from adult and pediatric patients. Importantly, the efficacy of HFOV is likely associated with the age of the patient, as Arnold et al. reported that patients older than five years had dramatically increased mortality compared with patients younger than five years, when treated with HFOV [33]. Additionally, the earlier Cochrane review [27] found only two small RCTs and was not powerful enough to draw definitive conclusions. Although the later one [32] included Although the meta-analysis of ICU mortality demon- strated that HFOV did not significantly affect ICU mortal- ity compared with CMV, the sensitivity analysis showed that the OSCAR trial [22] drastically affected the pooled results of our meta-analysis of ICU mortality. After the OSCAR trial was excluded, the pooled results suggested that the application of HFOV would significantly increase Page 8 of 9 Gu et al. Critical Care 2014, 18:R111 http://ccforum.com/content/18/3/R111 Gu et al. Critical Care 2014, 18:R111 http://ccforum.com/content/18/3/R111 Gu et al. Critical Care 2014, 18:R111 http://ccforum.com/content/18/3/R111 1. Herridge MS, Cheung AM, Tansey CM, Matte-Martyn A, Diaz-Granados N, Al-Saidi F, Cooper AB, Guest CB, Mazer CD, Mehta S, Stewart TE, Barr A, Cook D, Slutsky AS, Canadian Critical Care Trials Group: One-year outcomes in survivors of the acute respiratory distress syndrome. N Engl J Med 2003, 348:683–693. References Sud S, Sud M, Friedrich JO, Meade MO, Ferguson ND, Wunsch H, Adhikari NK: High frequency oscillation in patients with acute lung injury and acute respiratory distress syndrome (ARDS): systematic review and meta-analysis. BMJ 2010, 340:c2327. 5. Ranieri VM, Suter PM, Tortorella C, De Tullio R, Dayer JM, Brienza A, Bruno F, Slutsky AS: Effect of mechanical ventilation on inflammatory mediators in patients with acute respiratory distress syndrome: a randomized controlled trial. JAMA 1999, 282:54–61. 29. Cochrane Handbook for Systematic Reviews of Interventions. [http://www.cochrane.org/training/cochrane-handbook] [http://www.cochrane.org/training/cochrane-handbook] 30. Higgins JP, Thompson SG, Deeks JJ, Altman DG: Measuring inconsistency in meta-analyses. BMJ 2003, 327:557–560. 6. Chiumello D, Pristine G, Slutsky AS: Mechanical ventilation affects local and systemic cytokines in an animal model of acute respiratory distress syndrome. Am J Respir Crit Care Med 1999, 160:109–116. y , 31. Shah SBFG, Jackson SK, Smithies MN: Prospective study comparing HFOV y 31. Shah SBFG, Jackson SK, Smithies MN: Prospective study comparing HFOV versus CMV in patients with ARDS. Intensive Care Med 2004, 30:S84. 7. Ware LB, Matthay MA: The acute respiratory distress syndrome. N Engl J Med 2000, 342:1334–1349. 32. Sud S, Sud M, Friedrich JO, Wunsch H, Meade MO, Ferguson ND, Adhikari NK: High-frequency ventilation versus conventional ventilation for treatment of acute lung injury and acute respiratory distress syndrome. Cochrane Database Syst Rev 2013, 2:CD004085. 8. Frank JA, Matthay MA: Science review: mechanisms of ventilator-induced injury. Crit Care 2003, 7:233–241. 9. Froese AB: High-frequency oscillatory ventilation for adult respiratory distress syndrome: let’s get it right this time! Crit Care Med 1997, 25:906–908. 33. Arnold JHHJ, Toro-Figuero LO, Gutierrez J: High-frequency ventilation versus conventional mechanical ventilation in pediatric respiratory failure. Crit Care Med 1995, 23:1444–1446. 10. Hudson LD: Protective ventilation for patients with acute respiratory distress syndrome. N Engl J Med 1998, 338:385–387. 34. Papazian L, Gainnier M, Marin V, Donati S, Arnal JM, Demory D, Roch A, Forel JM, Bongrand P, Bregeon F, Sainty JM: Comparison of prone positioning and high-frequency oscillatory ventilation in patients with acute respiratory distress syndrome. Crit Care Med 2005, 33:2162–2171. 11. Marini JJ: Recruitment maneuvers to achieve an “open lung”– whether and how? Crit Care Med 2001, 29:1647–1648. 12. Slutsky AS, Drazen JM: Ventilation with small tidal volumes. N Engl J Med 2002, 347:630–631. 35. References 1. Herridge MS, Cheung AM, Tansey CM, Matte-Martyn A, Diaz-Granados N, Al-Saidi F, Cooper AB, Guest CB, Mazer CD, Mehta S, Stewart TE, Barr A, Cook D, Slutsky AS, Canadian Critical Care Trials Group: One-year outcomes in survivors of the acute respiratory distress syndrome. N Engl J Med 2003, 348:683–693. 1. Herridge MS, Cheung AM, Tansey CM, Matte-Martyn A, Diaz-Granados N, Al-Saidi F, Cooper AB, Guest CB, Mazer CD, Mehta S, Stewart TE, Barr A, Cook D, Slutsky AS, Canadian Critical Care Trials Group: One-year outcomes in survivors of the acute respiratory distress syndrome. N Engl J Med 2003, 348:683–693. Page 9 of 9 Page 9 of 9 Gu et al. Critical Care 2014, 18:R111 http://ccforum.com/content/18/3/R111 Gu et al. Critical Care 2014, 18:R111 http://ccforum.com/content/18/3/R111 25. Mehta S, Granton J, MacDonald RJ, Bowman D, Matte-Martyn A, Bachman T, Smith T, Stewart TE: High-frequency oscillatory ventilation in adults: the Toronto experience. Chest 2004, 126:518–527. 2. Angus DC, Musthafa AA, Clermont G, Griffin MF, Linde-Zwirble WT, Dremsizov TT, Pinsky MR: Quality-adjusted survival in the first year after the acute respiratory distress syndrome. Am J Respir Crit Care Med 2001, 163:1389–1394. 26. Adhikari NK, Bashir A, Lamontagne F, Mehta S, Ferguson ND, Zhou Q, Hand L, Czarnecka K, Cook DJ, Granton JT, Friedrich JO, Freitag A, Watpool I, Meade MO: High-frequency oscillation in adults: a utilization review. Crit Care Med 2011, 39:2631–2644. 3. Villar J, Kacmarek RM, Perez-Mendez L, Aguirre-Jaime A: A high positive end-expiratory pressure, low tidal volume ventilatory strategy improves outcome in persistent acute respiratory distress syndrome: a randomized, controlled trial. Crit Care Med 2006, 34:1311–1318. 3. Villar J, Kacmarek RM, Perez-Mendez L, Aguirre-Jaime A: A high positive end-expiratory pressure, low tidal volume ventilatory strategy improves outcome in persistent acute respiratory distress syndrome: a randomized, controlled trial. Crit Care Med 2006, 34:1311–1318. 4. Cheung AM, Tansey CM, Tomlinson G, Diaz-Granados N, Matte A, Barr A, Mehta S, Mazer CD, Guest CB, Stewart TE, Al-Saidi F, Cooper AB, Cook D, Slutsky AS, Herridge MS: Two-year outcomes, health care use, and costs of survivors of acute respiratory distress syndrome. Am J Respir Crit Care Med 2006, 174:538–544. 27. Wunsch H, Mapstone J: High-frequency ventilation versus conventional ventilation for treatment of acute lung injury and acute respiratory distress syndrome. Cochrane Database Syst Rev 2004, 1:CD004085. 28. doi:10.1186/cc13900 doi:10.1186/cc13900 Cite this article as: Gu et al.: Is high-frequency oscillatory ventilation more effective and safer than conventional protective ventilation in adult acute respiratory distress syndrome patients? A meta-analysis of randomized controlled trials. Critical Care 2014 18:R111. 19. Bollen CW, van Well GT, Sherry T, Beale RJ, Shah S, Findlay G, Monchi M, Chiche JD, Weiler N, Uiterwaal CS, van Vught AJ: High frequency oscillatory ventilation compared with conventional mechanical ventilation in adult respiratory distress syndrome: a randomized controlled trial [ISRCTN24242669]. Crit Care 2005, 9:R430–R439. 20. Demory D, Michelet P, Arnal JM, Donati S, Forel JM, Gainnier M, Bregeon F, Papazian L: High-frequency oscillatory ventilation following prone positioning prevents a further impairment in oxygenation. Crit Care Med 2007, 35:106–111. 21. Ferguson ND, Cook DJ, Guyatt GH, Mehta S, Hand L, Austin P, Zhou Q, Matte A, Walter SD, Lamontagne F, Granton JT, Arabi YM, Arroliga AC, Stewart TE, Slutsky AS, Meade MO, OSCILLATE Trial Investigators; Canadian Critical Care Trials Group: High-frequency oscillation in early acute respiratory distress syndrome. N Engl J Med 2013, 368:795–805. Submit your next manuscript to BioMed Central and take full advantage of: • Convenient online submission • Thorough peer review • No space constraints or color figure charges • Immediate publication on acceptance • Inclusion in PubMed, CAS, Scopus and Google Scholar • Research which is freely available for redistribution Submit your manuscript at www.biomedcentral.com/submit Submit your next manuscript to BioMed Central and take full advantage of: • Convenient online submission • Thorough peer review • No space constraints or color figure charges • Immediate publication on acceptance • Inclusion in PubMed, CAS, Scopus and Google Scholar • Research which is freely available for redistribution Submit your manuscript at www.biomedcentral.com/submit Submit your next manuscript to BioMed Central and take full advantage of: • Convenient online submission • Thorough peer review • No space constraints or color figure charges • Immediate publication on acceptance • Inclusion in PubMed, CAS, Scopus and Google Scholar • Research which is freely available for redistribution Submit your manuscript at www.biomedcentral.com/submit Submit your next manuscript to BioMed Central and take full advantage of: doi:10.1186/cc13900 Cite this article as: Gu et al.: Is high-frequency oscillatory ventilation more effective and safer than conventional protective ventilation in adult acute respiratory distress syndrome patients? A meta-analysis of randomized controlled trials. Critical Care 2014 18:R111. References Mentzelopoulos SDMS, Malachias S, Tzoufi M, Markaki V, Zervakis D, Pitaridis M, Zakynthinos S: High frequency oscillation and tracheal gas insufflation for severe acute respiratory distress syndrome. Intensive Care Med 2007, 33:S142. 13. dos Santos CC, Slutsky AS: Overview of high-frequency ventilation modes, clinical rationale, and gas transport mechanisms. Respir Care Clin N Am 2001, 7:549–575. 14. Slutsky AS: Nonconventional methods of ventilation. Am Rev Respir Dis 1988, 138:175–183. 36. Sedeek KA, Takeuchi M, Suchodolski K, Vargas SO, Shimaoka M, Schnitzer JJ, Kacmarek RM: Open-lung protective ventilation with pressure control ventilation, high-frequency oscillation, and intratracheal pulmonary ventilation results in similar gas exchange, hemodynamics, and lung mechanics. Anesthesiology 2003, 99:1102–1111. 15. Imai Y, Slutsky AS: High-frequency oscillatory ventilation and ventilator- induced lung injury. Crit Care Med 2005, 33:S129–S134. 16. Krishnan JA, Brower RG: High-frequency ventilation for acute lung injury and ARDS. Chest 2000, 118:795–807. 37. Gattinoni L, Caironi P, Cressoni M, Chiumello D, Ranieri VM, Quintel M, Russo S, Patroniti N, Cornejo R, Bugedo G: Lung recruitment in patients with the 37. Gattinoni L, Caironi P, Cressoni M, Chiumello D, Ranieri VM, Quintel M, Russo S, Patroniti N, Cornejo R, Bugedo G: Lung recruitment in patients with the acute respiratory distress syndrome. N Engl J Med 2006, 354:1775–1786. 17. Rimensberger PC: ICU cornerstone: high frequency ventilation is here to stay. Crit Care 2003, 7:342–344. S, Patroniti N, Cornejo R, Bugedo G: Lung recruitment in patients with the acute respiratory distress syndrome. N Engl J Med 2006, 354:1775–1786. 18. Derdak S, Mehta S, Stewart TE, Smith T, Rogers M, Buchman TG, Carlin B, Lowson S, Granton J: High-frequency oscillatory ventilation for acute respiratory distress syndrome in adults: a randomized, controlled trial. Am J Respir Crit Care Med 2002, 166:801–808. Submit your next manuscript to BioMed Central and take full advantage of: 22. Young D, Lamb SE, Shah S, MacKenzie I, Tunnicliffe W, Lall R, Rowan K, Cuthbertson BH: High-frequency oscillation for acute respiratory distress syndrome. N Engl J Med 2013, 368:806–813. • Convenient online submission • Thorough peer review 23. Fort P, Farmer C, Westerman J, Johannigman J, Beninati W, Dolan S, Derdak S: High-frequency oscillatory ventilation for adult respiratory distress syndrome–a pilot study. Crit Care Med 1997, 25:937–947. 24. Ferguson ND, Chiche JD, Kacmarek RM, Hallett DC, Mehta S, Findlay GP, Granton JT, Slutsky AS, Stewart TE: Combining high-frequency oscillatory ventilation and recruitment maneuvers in adults with early acute respiratory distress syndrome: the Treatment with Oscillation and an Open Lung Strategy (TOOLS) Trial pilot study. Crit Care Med 2005, 33:479–486. 24. Ferguson ND, Chiche JD, Kacmarek RM, Hallett DC, Mehta S, Findlay GP, Granton JT, Slutsky AS, Stewart TE: Combining high-frequency oscillatory ventilation and recruitment maneuvers in adults with early acute respiratory distress syndrome: the Treatment with Oscillation and an Open Lung Strategy (TOOLS) Trial pilot study. Crit Care Med 2005, 33:479–486.
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Method for Assigning Priority Levels in Acute Care (MAPLe-AC) predicts outcomes of acute hospital care of older persons - a cross-national validation
BMC medical informatics and decision making
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Abstract Background: Although numerous risk factors for adverse outcomes for older persons after an acute hospital stay have been identified, a decision making tool combining all available information in a clinically meaningful way would be helpful for daily hospital practice. The purpose of this study was to evaluate the ability of the Method for Assigning Priority Levels for Acute Care (MAPLe-AC) to predict adverse outcomes in acute care for older people and to assess its usability as a decision making tool for discharge planning. Methods: Data from a prospective multicenter study in five Nordic acute care hospitals with information from admission to a one year follow-up of older acute care patients were compared with a prospective study of acute care patients from admission to discharge in eight hospitals in Canada. The interRAI Acute Care assessment instrument (v1.1) was used for data collection. Data were collected during the first 24 hours in hospital, including pre-morbid and admission information, and at day 7 or at discharge, whichever came first. Based on this information a crosswalk was developed from the original MAPLe algorithm for home care settings to acute care (MAPLe-AC). The sample included persons 75 years or older who were admitted to acute internal medical services in one hospital in each of the five Nordic countries (n = 763) or to acute hospital care either internal medical or combined medical-surgical services in eight hospitals in Ontario, Canada (n = 393). The outcome measures considered were discharge to home, discharge to institution or death. Outcomes in a 1-year follow-up in the Nordic hospitals were: living at home, living in an institution or death, and survival. Logistic regression with ROC curves and Cox regression analyses were used in the analyses. Results: Low and mild priority levels of MAPLe-AC predicted discharge home and high and very high priority levels predicted adverse outcome at discharge both in the Nordic and Canadian data sets, and one-year outcomes in the Nordic data set. The predictive accuracy (AUC’s) of MAPLe-AC’s was higher for discharge outcome than one year outcome, and for discharge home in Canadian hospitals but for adverse outcome in Nordic hospitals. High and very high priority levels in MAPLe-AC were also predictive of days to death adjusted for diagnoses in survival models. Conclusion: MAPLe-AC is a valid algorithm based on risk factors that predict outcomes of acute hospital care. * Correspondence: anja.noro@thl.fi 1Ageing and Services Unit, National Institute for Health and Welfare, P.O. Box 30, FI-00271 Helsinki, Finland Full list of author information is available at the end of the article Noro et al. BMC Medical Informatics and Decision Making 2011, 11:39 http://www.biomedcentral.com/1472-6947/11/39 Noro et al. BMC Medical Informatics and Decision Making 2011, 11:39 http://www.biomedcentral.com/1472-6947/11/39 Noro et al. BMC Medical Informatics and Decision Making 2011, 11:39 http://www.biomedcentral.com/1472-6947/11/39 Open Access Method for Assigning Priority Levels in Acute Care (MAPLe-AC) predicts outcomes of acute hospital care of older persons - a cross-national validation Method for Assigning Priority Levels in Acute Care (MAPLe-AC) predicts outcomes of acute hospital care of older persons - a cross-national validation Anja Noro1*, Jeffrey W Poss2, John P Hirdes2,3, Harriet Finne-Soveri1, Gunnar Ljunggren4,5, Jan Björnsson6, Marianne Schroll7 and Palmi V Jonsson8,9 © 2011 Noro et al; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Background The challenge of care for older persons increases with the presence of multiple chronic conditions, and physi- cal or cognitive decline, as indicated by systematic litera- ture review by Campbell et al. 2004 [1]. Acute hospital care is a complex link in the care chain for these per- sons. The high cost of acute care causes pressures to shorten length of stay in this setting, but readmission rates are high, 11.8% at one month [2] and 35% with prior hospitalization during past 90 days [3]. A signifi- cant proportion of older people in acute care already have contact with home care services, and the admission to hospital increases risk for institutionalization. Clini- cians in acute care are faced with the issues of taking care of these people’s immediate health care needs as well as planning the hospital discharge at the earliest possible date, with or without support services. Predictors of outcome in older medical clients are complex. Systematic data collection on admission is desirable. The interRAI - Acute Care (interRAI-AC) assessment system has been constructed to help clini- cians with comprehensive geriatric assessment in acute care and to identify potentially remediable co-morbidity and functional deficiencies [3,13]. InterRAI-AC is one of the earlier versions of the interRAI instruments that have been constructed to provide a systematic approach comprehensive assessment that applies across different care settings [19]. An important element of discharge planning lies in the effectiveness of communication between hospital and community. The best use of electronic medical records highlights the importance of systematic and standardized assessment information. Recent research and development has lead to the introduction of the Method for Assigning Priority Levels for Home Care (MAPLe-HC), a decision-support tool for home care service allocation [20]. The MAPLe-HC algorithm is based on the interRAI-HC instrument [21,22]. Among home care clients, the MAPLe-HC algorithm predicted both nursing home placement in 90 days, caregiver stress, and a belief that the home care client would be better off elsewhere. The MAPLe-HC algorithm [20] was created in Canada and it was validated with data from six countries. It is now in widespread use in sev- eral Canadian provinces and Finland. Both interRAI-HC [21,22] and interRAI-AC [13] instruments have many common items that are used for the MAPLe-algorithm. People with multiple health care needs and underlying chronic conditions have been shown to have the poorest outcomes in hospital care [1-5]. Abstract It could be a helpful tool for early discharge planning although further testing for active use in clinical practice is still needed. Noro et al. BMC Medical Informatics and Decision Making 2011, 11:39 http://www.biomedcentral.com/1472-6947/11/39 Noro et al. BMC Medical Informatics and Decision Making 2011, 11:39 http://www.biomedcentral.com/1472-6947/11/39 Page 2 of 14 act as a part of a fully integrated seamless information system for multiple care sectors. Background The challenge of identi- fying the need for and prioritizing access to specialized geriatric services to address the needs of frail older per- sons in acute care is demanding. Comprehensive geria- tric assessment (CGA) in in-patient settings has been shown to increase long-term chances of older persons to live at home [6,7]. Using standardized assessment for older persons at admission and using this information to support decision making would be beneficial for their discharge planning [8]. Delayed discharges are caused by medical and non- medical circumstances. Several studies have identified Activities of Daily Living (ADL) and cognitive impair- ments as contributors for unsuccessful discharges home [9]. Other risk factors that have been identified include delirium, incontinence, falls, pressure ulcers, psychiatric symptoms, instrumental activities of daily living deficits, certain diagnoses, severity of the illness, and lack of informal support. Based on a Cochrane systematic review by Shepperd et al. 2010 [10], a structured dis- charge plan tailored to the older person’s needs may reduce hospital length of stay and lower the risk of readmission, but the impact of discharge planning on mortality, health outcomes, and costs still remains uncertain [9,10]. A comprehensive hospital discharge program might also be beneficial decreasing readmission and adverse outcomes [5,11,12]. The purpose of this study was to develop the MAPLe- AC with a crosswalk from the MAPLe-HC algorithm and to test whether the new MAPLe-AC algorithm would predict outcome of acute hospital care. In this context, outcomes of interest were discharge home, nur- sing home placement or death, and at one year out- comes living at home or living in an institution or death, and survival. Algorithm cross-walk The basis for both MAPLe algorithms were items of standardized measurements: interRAI assessment instru- ments for home care (interRAI-HC) [21,22] and acute care (interRAI-AC v1.1) [13]. The interRAI-HC assess- ments are conducted when the new clients enter home care, and then each 6 months or earlier if the condition of the client changes. The interRAI-AC v1.1 instrument comprises longitudinal information pertinent to the whole acute care episode: pre-morbid status (30 days before admission), at admission (24 hours prior to Still, the question remains how to predict likely out- comes of hospital care and how people should be tar- geted for interventions aimed at diminishing the risk of adverse outcome of hospital care. A number of studies considering this issue have already been published [1,3-5,7,9,10,12-18]. However, none of the developed protocols, programs, or assessment tools available today Page 3 of 14 Noro et al. BMC Medical Informatics and Decision Making 2011, 11:39 http://www.biomedcentral.com/1472-6947/11/39 Noro et al. BMC Medical Informatics and Decision Making 2011, 11:39 http://www.biomedcentral.com/1472-6947/11/39 with pressure ulcers. The Cognitive Performance Scale (CPS) [23] and ADL hierarchy [24] scales were identical. For the geriatric screener subscale, the item on stamina was missing from interRAI-AC. The risk for nursing home is calculated as a sum based on 8 categories including prior nursing home placement, going out, bladder incontinence, illnesses (Any dementia, Alzhei- mers’ disease, Multiple Sclerosis, Head trauma), ADL decline (based on calculation in interRAI-AC), hygiene or bathing; indicators of delirium, meal and shopping activities [25]. Other items in the MAPLe-HC not avail- able in the interRAI-AC were overall change in care needs, and difficulties in dressing. In MAPLe-AC the nursing home risk is active if there are 3 or more risks activated whereas in the MAPLe-HC the cut-off is 4 or more. The MAPLe-AC algorithm produces five main categories from low priority level to very high priority level. The MAPLe-AC algorithms were calculated for three points based on the patient’s care episode infor- mation on pre-morbid, admission, and day 7 or dis- charge if earlier. admission), status 24 hours pre-discharge or the 7th day whichever comes first, and the day when the assignment to “alternate level of care” is made for those who remain in hospital but do not require acute care. The last assessment point was not used in this study. Algorithm cross-walk The infor- mation concerning pre-morbid and admission status are collected during the first 24 hours in hospital and the second time on the day of discharge or the 7th day of hospitalization, whichever came first. Sources of data are the elderly patients (through direct observation and/or interview), their relatives, patient records, or home care staff, whichever are available for the assessor. The MAPLe-AC algorithm was developed to mirror the MAPLe-HC wherever possible. The MAPLe-HC algorithm utilizes 44 interRAI-HC items [20], but only 31 of those were directly available in the acute care instrument. Figure 1 provides a schematic representa- tion [20] of the MAPLe-AC algorithm cross-walked to the MAPLe-HC algorithm. The modification from MAPLe-HC to MAPle-AC was conducted by the origi- nal developers of MAPLe-HC and first author of this paper. The measures used in creating the algorithm were ADL impairment, cognitive impairment, behavior disturbance (verbally or physically abusive, socially inap- propriate behavior, resists care), decline in decision making, problems with medication management, pres- sure ulcers, falls, problems with meal preparation, diffi- culty swallowing, and the RAI-HC’s nursing home risk care-planning protocol. The items that were available in interRAI-HC but not in interRAI-AC were inadequate meals as co-classifier with swallowing problems and falls; wandering as co-classifier with risk for institutional care, environment problems as a co-classifier with medi- cation management, and stasis ulcers as co-classifier Data Two data sets were used to create and test the MAPLe- AC algorithm. The first data set was from an acute hospi- tal care study conducted in one hospital in each of five Nordic countries: Denmark, Finland, Iceland, Norway and Sweden in 2000-2001 (later referred to as Nordic hospitals) which each served a defined geographical area [3,26]. The second data set was from a study conducted in eight acute care hospitals in the province of Ontario, Canada in 2001. The MAPLe-AC algorithm was created using the Nordic data set which subsequently was applied to the Canadian data set for validation. ADL impairment (ADL _H=1+) Behavioral symptoms No ADL impairment (ADL_H=0) Behavioral symptoms No behavioral symptoms Cognition problems (CPS>=3) Falls Mild cognition problems (CPS<=1 Behavioral symptoms HIGH No behavioral symptoms No falls No behavioral symptoms Deterioration in desicion making skills HIGH Risk for institutional care Cognition problems (CPS<=2) No desicion making deterioration Medication problems MODER. No risk for institutional care Swallowing problem or falls No medication problems Pressure ulcer No swallowing problem, no falls No pressure ulcer Geriatric screener: impaired Help in meal preparations Geriatric screener: self realiant No help in meal preparation Cognition problems (CPS>=2) VERY HIGH VERY HIGH VERY HIGH VERY HIGH HIGH HIGH HIGH HIGH MODER. MODER. LOW MILD Figure 1 Schematic representation of the MAPLe-AC algorithm based on client characteristics, see also Hirdes et al. 2008 [20]. hematic representation of the MAPLe-AC algorithm based on client characteristics, see also Hirdes et al. 2008 [20]. Noro et al. BMC Medical Informatics and Decision Making 2011, 11:39 http://www.biomedcentral.com/1472-6947/11/39 Noro et al. BMC Medical Informatics and Decision Making 2011, 11:39 http://www.biomedcentral.com/1472-6947/11/39 Page 4 of 14 In both studies the data collection was based on inter- RAI-AC v1.1 assessments [13]. In the Nordic study, two assessors (nurse-nurse or nurse-doctor pairs) in each country were trained by the researchers, and the inter- RAI-AC instrument and manual were translated from English to each of the Nordic languages by experienced translators of the interRAI tools [26]. In the Canadian study, there was one nurse assessor who was trained in doing the assessments in each hospital. reason for hospital care, the following variable was used: having a new problem, exacerbation of existing problem, or both new and old problem (one or more). Ethical considerations The Nordic study plan was reviewed by ethical commit- tees in each of the Nordic countries and informed con- sent was asked either from the person admitted or a proxy if the person was too sick. The pre-morbid infor- mation was collected retrospectively in the 24 hours after admission. The Canadian study plan was reviewed by University of Waterloo Office of Research Ethics, and informed consent was sought from the person admitted or proxy. The analyses conducted for this article are consistent with the purposes of the original studies, to test instrument suitability and applicability for decision making support in acute hospital care settings. Participants h d ROC (Receiver Operating Character) curves have been used in visualizing a classifier’s performance in order to select a suitable operating point, or decision threshold [28], and it is more commonly used in medical decision making [29]. A ROC curve is a two-dimensional depic- tion of classifier performance (i.e., predictive accuracy) and it indicates true positive and false positive rates. The Area Under ROC (AUC) gives the scalar value of perfor- mance varying from 0 to 1.0, and usually falls between 0.5 (50% sensitivity and 50% specificity) or 1.0 (100% sen- sitivity and 100% specificity). For each of the logistic ana- lyses (SAS9.2) ROC curves were calculated of which AUC’s are reported by c-statistics in Tables 2 and 3. The Nordic study was carried out in acute medical care in hospitals serving defined communities, one in each of the Nordic countries, with catchment areas of at least 90,000 persons [3,26]. The prospective study design included people aged 75 years or older (n = 763) who were admitted to hospital for acute medical care. Those in critical condition or who were admitted directly to intensive care were excluded. Participants were randomly selected from admission lists and the patients were assessed within 24 hours with interRAI-AC instrument. The data collectors reviewed the hospital records, interviewed and observed the cli- ents, and interviewed relatives and staff. The patients were followed up until one year after initial admission. One year follow-up data of site of residence and mortal- ity was collected from hospital registers, contacting the person or proxy, or from national registers. For assessing the performance of the MAPLe-AC pre- dictions for outcomes, the ROC Curves were also calcu- lated for MAPLe-AC’s as continuous variables in bivariate models in the Nordic hospital data set. Values of AUC are presented in Table 4 and the respective ROC Curves in Figures 2 and 3. The Canadian study included people aged 75 years or older (n = 393) admitted to acute internal medical or combined medical-surgical services and assessments were done during the hospital stay and at discharge with interRAI-AC (v1.1) instrument, but without further follow-up. Survival models for days to death (up to 365 days) were estimated with Cox regression (561 survivors and 202 deaths). Statistical analyses were conducted by using SAS for Windows 9.1 and 9.2 (SAS Institute Inc., Cary, NC, USA). Statistical analyses The MAPLe-AC algorithm was created for the three first assessment time points (pre-morbid, admission, and 7th day or discharge), and their predictive values for var- ious outcomes were tested in the Nordic sample. The main outcomes were either discharge home or adverse outcomes like discharge to institution or death. The one year outcomes were available only for the Nordic data and those were: living at home, or adverse outcome combining nursing home placement and/or death. The analyses involved cross-tabulations with Chi-squared tests of significance for categorical variables and means with t-tests for continuous variables (see Table 1). Tests for the predictive value of the MAPLe-AC at discharge and one year follow-up involved both bivariate and mul- tivariate logistic regression models. The multivariate models include sex and age as dummy variables classi- fied to four groups with the youngest age group being the reference. As a crude co-morbidity adjuster for the Data This vari- able was available in interRAI-AC (v1.1) and earlier research indicates that co-morbidities are associated with poor short- and long-term outcomes of intensive hospital care [27]. The very high priority level in MAPLe-AC was used as reference value for analyses of discharge home and living at home at one year, and the low priority level was used as reference value for adverse outcomes and in Cox regression. - follow-up data not collected. Results The Nordic (n = 763) and Canadian (n = 393) study populations did not statistically differ with respect to sex, age or earlier hospitalization (Table 1), or length of Noro et al. BMC Medical Informatics and Decision Making 2011, 11:39 http://www.biomedcentral.com/1472-6947/11/39 Page 5 of 14 Table 1 Basic characteristics of acute care patients and outcomes of their care between Nordic and Canadian hospita Nordic hospitals, in 2000-2001 (n = 763) Canadian hospitals, in 2001 (n = 393) Nordic vs. Canadian hospitals n % n % p < Women 497 65.1 234 59.5 0.267 Age 75-79 203 26.6 84 21.4 Age 80-84 232 30.4 119 30.3 Age 85-89 210 27.5 116 29.5 Age 90+ 118 15.5 74 18.8 0.172 Lived alone at admission 468 61.3 117 29.8 0.000 Earlier hospitalization (past 90 days) 239 31.3 123 31.8 0.993 Reason hospitalization New problem 304 39.9 211 53.7 Exacerbation of existing problem 298 39.1 126 32.1 Both new and old problem 160 21.0 56 14.3 0.000 Outcome at discharge Home 626 82.0 197 50.1 Institution 81 10.6 109 27.7 Dead 42 5.5 46 11.7 Other 14 1.8 41 10.4 0.000 Outcome at one year Home 426 55.8 - Institution 79 10.4 - Dead 202 26.5 - Other 56 7.3 - - MAPLe-AC pre-morbid Low 301 39.4 124 31.6 Mild 79 10.4 45 11.5 Moderate 184 24.1 88 22.4 High 151 19.8 92 23.4 Very high 48 6.3 44 11.2 0.006 MAPLe-AC admission Low 91 11.9 57 14.5 Mild 65 8.5 37 9.4 Moderate 341 44.7 119 30.3 High 193 25.3 118 30.0 Very high 73 9.6 62 15.8 0.000 MAPLe-AC 7th day or discharge Low 176 23.1 59 15.6 Mild 101 13.7 37 9.8 Moderate 237 31.1 105 27.8 High 181 23.7 108 28.6 Very high 68 8.9 69 18.3 0.000 - follow-up data not collected. Table 1 Basic characteristics of acute care patients and outcomes of their care between Nordic and Canadian hospitals Nordic hospitals, in 2000-2001 Canadian hospitals, in 2001 Nordic vs. Canadian Basic characteristics of acute care patients and outcomes of their care between Nordic and Canadi ristics of acute care patients and outcomes of their care between Nordic and Canadian hospitals tients and outcomes of their care between Nordic and Canadian hospitals Page 6 of 14 Noro et al. Results BMC Medical Informatics and Decision Making 2011, 11:39 http://www.biomedcentral.com/1472-6947/11/39 Noro et al. BMC Medical Informatics and Decision Making 2011, 11:39 http://www.biomedcentral.com/1472-6947/11/39 Noro et al. BMC Medical Informatics and Decision Making 2011, 11:39 http://www.biomedcentral.com/1472-6947/11/39 Page 7 of 14 Table 2 Predicting discharge home or living at home at one year by MAPLe-AC based on pre-morbid, admission and 7th day or discharge information in multivariate regression analyses adjusted for sex, age and reason for hospitaliza- tion (Continued) Table 2 Predicting discharge home or living at home at one year by MAPLe-AC based on pre-morbid, admission and 7th day or discharge information in multivariate regression analyses adjusted for sex, age and reason for hospitaliza- tion (Continued) Mild 9.46 3.79 23.61 36.40 10.11 132.56 3.33 1.67 6.64 Moderate 2.83 1.59 5.06 5.83 2.57 13.23 1.77 0.98 3.20 High 2.24 1.23 4.07 4.77 2.88 10.93 1.45 0.79 2.67 Very high 1.00 1.00 1.00 Tests Pre- morbid Admission 7th day/ discharge Pre- morbid Admission 7th day/ discharge Pre- morbid Admission 7th day/ discharge R-square, % 16.5 13.1 17.0 25.0 30.6 39.2 13.9 9.0 9.7 c-statistics (AUC) 0.74 0.71 0.73 0.76 0.78 0.83 0.68 0.65 0.66 1 OR = Odds Ratio, 2 CI = Confidence Interval. 1 OR = Odds Ratio, 2 CI = Confidence Interval. pre-morbid and 7th day or discharge information. When we compared Nordic and Canadian hospitals, at each assessment time the Canadian patients with moderate and high priority levels consistently had higher probabil- ity of being discharged home than the Nordic patients. stay in mean + std days 12.7+21.0 vs. 14.5+18.2, p = .361. However, the Nordic patients were more likely to live alone (61%) before admission compared to the Canadians (30%). There was also significant difference with respect to the reason for admission to hospital. For half of the Canadian admissions it was a new problem (54%), and in the Nordic sample it was more often an exacerbation of an old problem (39%), or both a new and an old problem (21%). The MAPLe-AC algorithm on pre-morbid, admission, and 7th day or discharge predicted living at home at one year (Table 2). The strongest predictions were found with pre-morbid information, in which those in low priority level had 9.8 times higher odds of living at home at one year. Those in high priority level had 3.4 fold higher probability of living at home than those in very high priority level. Results The MAPLe-AC based on admission information gave higher odds (OR = 6.14) for those in the mild priority level than those in low priority level (OR = 3.51) to live at home at 1 year compared with the very high priority level, although confidence intervals for these point estimates overlap. Most of the Nordic patients were discharged home, 5.5% died during the hospital episode, and one in ten was discharged to institutional care. One in two of the Canadians were discharged home, one in three was dis- charged to an institution and 11.7% died during the epi- sode. In the Nordic data set, at one year one in two persons was living at home, one in ten was living in an institution, and 27% had died (Table 1). After creating and calculating the new MAPLe-AC algorithms for all three time points in both data sets, the priority levels were significantly higher in the Cana- dian sample compared with the Nordic sample. As to the pre-morbid situation, almost one in two persons was classified in a low or mild priority level, but on admis- sion people were mostly in a moderate to high priority level, and on day 7 or at discharge there was an increase in Nordic hospitals in the proportion of low or mild priority levels compared to Canadian sample. However, a slightly higher proportion of persons were in high or very high priority levels during the pre-morbid period in the Canadian sample (Table 1). The c-statistics indicating AUC’s were similar with Nordic and Canadian hospitals in pre-morbid (0.74 vs. 0.76), but when using admission assessments the Cana- dian hospitals yielded higher values (0.78 vs. 0.71). Simi- lar results were evident for the assessments on the 7th day or discharge (0.83 vs. 0.73). For the one year out- come in Nordic hospitals, the AUC’s were lower than discharge home for each measurement point (0.68 vs. 0.74; 0.65 vs. 0.71; 0.66 vs. 0.73). MAPLe-AC predicted adverse outcomes at discharge in a similar way in both data sets, although the odds ratios were higher in the Nordic data. The likely reason is that there were fewer persons with adverse outcomes in Nordic hospitals compared with persons in Canadian hospitals (Table 3). Results BMC Medical Informatics and Decision Making 2011, 11:39 http://www.biomedcentral.com/1472-6947/11/39 Table 2 Predicting discharge home or living at home at one year by MAPLe-AC based on pre-morbid, admission and 7th day or discharge information in multivariate regression analyses adjusted for sex, age and reason for hospitalization discharge home or living at home at one year by MAPLe-AC based on pre-morbid, admission and ge information in multivariate regression analyses adjusted for sex, age and reason for Table 2 Predicting discharge home or living at home at one year by MAPLe-AC based on pre-morbid, admission and 7th day or discharge information in multivariate regression analyses adjusted for sex, age and reason for hospitalization Discharged home Living home at one year Nordic hospitals, in 2000-2001 Canadian hospitals, in 2001 Nordic hospitals, in 2000-2001 n 626/137 197/196 426/295 Pre-morbid information OR1 95% CI2 OR 95% CI OR 95% CI Sex (Women = 1) 1.12 0.74 1.69 1.31 0.83 2.08 1.28 0.92 1.78 Age 75-79 1.00 1.00 1.00 Age 80-84 0.82 0.47 1.45 0.94 0.50 1.77 1.02 0.67 1.55 Age 85-89 0.86 0.49 1.52 0.50 0.26 0.94 0.92 0.59 1.41 Age 90+ 0.61 0.33 1.13 0.29 0.14 3.73 0.67 0.40 1.11 Reason for hospitalization New problem 1.00 1.00 1.00 Exacerbation of existing problem 1.46 0.91 2.32 2.26 1.37 3.73 0.79 0.55 1.13 Both new and old problem 0.76 0.47 1.25 0.71 0.35 1.43 0.77 0.50 1.19 MAPLe-AC pre-morbid Low 12.20 5.68 26.30 11.60 4.53 29.71 9.76 4.57 20.82 Mild 4.23 1.89 9.85 10.89 3.75 31.64 4.13 1.78 9.57 Moderate 2.38 1.22 4.67 5.39 2.08 13.97 3.46 1.60 7.45 High 2.08 1.05 4.12 3.10 1.20 8.03 3.44 1.57 7.55 Very high 1.00 1.00 1.00 Admission information OR 95% CI OR 95% CI OR 95% CI Sex 1.20 0.80 1.80 1.18 0.73 1.88 1.35 0.97 1.87 Age 75-79 1.00 1.00 1.00 Age 80-84 0.74 0.43 1.28 0.88 0.46 1.67 0.91 0.60 1.38 Age 85-89 0.85 0.48 1.50 0.51 0.26 0.97 0.86 0.56 1.31 Age 90+ 0.54 0.30 1.00 0.35 0.17 0.75 0.57 0.35 0.94 Reason for hospitalization New problem 1.00 1.00 1.00 Exacerbation of existing problem 1.21 0.77 1.91 1.92 1.15 3.20 0.67 0.48 0.95 Both new and old problem 0.68 0.42 1.10 0.59 0.29 1.21 0.68 0.45 1.04 MAPLe-AC admission Low 11.63 3.77 35.88 9.39 3.84 22.94 3.51 1.74 7.10 Mild 8.77 2.84 27.13 25.80 7.60 87.64 6.14 2.76 13.69 Moderate 3.67 2.07 6.51 4.70 2.27 9.72 2.95 1.66 5.24 High 1.69 0.94 3.02 1.65 0.79 3.46 1.79 0.98 3.26 Very high 1.00 1.00 1.00 7th day or discharge information OR 95% CI OR 95% CI OR 95% CI Sex 1.12 0.74 1.69 0.94 0.55 1.61 1.31 0.95 1.81 Age 75-79 1.00 1.00 1.00 Age 80-84 0.79 0.45 1.39 0.81 0.37 1.77 0.97 0.64 1.47 Age 85-89 0.88 0.50 1.56 0.39 0.18 0.85 0.89 0.58 1.36 Age 90+ 0.62 0.34 1.15 0.45 0.18 1.06 0.64 0.39 1.05 Reason for hospitalization New problem 1.00 1.00 1.00 Exacerbation of existing problem 1.27 0.80 2.02 2.77 1.52 5.07 0.69 0.49 0.98 Both new and old problem 0.77 0.47 1.26 0.74 0.34 1.62 0.73 0.48 1.12 MAPLe-AC 7th day or discharge Low 19.11 7.31 50.00 49.98 15.27 163.63 4.23 2.22 8.07 Noro et al. Results In the pre-morbid, 7th day or dis- charge assessments, the risk for adverse outcome was higher among those in high or very high priority levels in the pre-morbid (OR 19.31 vs. 10.79) and in 7th day or discharge assessment (OR 51.7 vs. 11.1). At admission, those in moderate (OR 5.69) to very high priority levels (OR 22.5) had higher risk for adverse outcomes in Nor- dic hospitals, but in Canadian hospitals only those in For each time point, MAPLe-AC scores were predic- tive of discharge home, with similar directions and mag- nitudes of relationships in both data sets (Table 2). The exacerbation of an old problem was statistically signifi- cantly predictive of discharge home among persons in Canadian hospitals. In both data sets, those belonging to low or mild priority levels had the highest chance of being discharged home. There was also increased likeli- hood of going home for those in high priority levels compared with very high priority levels both based on Page 8 of 14 Noro et al. Results BMC Medical Informatics and Decision Making 2011, 11:39 http://www.biomedcentral.com/1472-6947/11/39 Page 9 of 14 Noro et al. BMC Medical Informatics and Decision Making 2011, 11:39 http://www.biomedcentral.com/1472-6947/11/39 Noro et al. BMC Medical Informatics and Decision Making 2011, 11:39 http://www.biomedcentral.com/1472-6947/11/39 Page 9 of 14 Table 3 Predicting adverse outcome (death or institutionalization) at discharge and at one year by MAPLe-AC based on pre-morbid, admission and 7th day or discharge information in multivariate regression analyses adjusted for sex, age and reason for hospitalization (Continued) Low 1.00 1.00 Mild 4.22 0.80 22.23 1.89 1.02 3.49 Moderate 18.06 4.29 75.99 1.00 3.30 2.01 5.43 High 25.09 5.95 105.89 4.83 2.83 8.25 5.61 3.34 9.41 Very high 51.71 11.70 228.66 11.07 5.76 21.29 8.45 4.36 16.39 Tests Pre- morbid Admission 7th day/ discharge Pre- morbid Admission 7th day/ discharge Pre- morbid Admission 7th day/ discharge R-square, % 19.9 14.7 20.3 23.4 29.5 30.1 20.5 14.6 16.1 c-statistics (AUC) 0.76 0.73 0.76 0.75 0.78 0.78 0.73 0.69 0.70 1 OR = Odds Ratio, 2 Confidence Interval. Table 3 Predicting adverse outcome (death or institutionalization) at discharge and at one year by MAPLe-AC based on pre-morbid, admission and 7th day or discharge information in multivariate regression analyses adjusted for sex, age and reason for hospitalization (Continued) high (OR 6.73) or very high priority levels (OR 8.01) had higher risk for adverse outcomes. The c-statistics indi- cating AUC’s were similar with Nordic and Canadian hospitals in pre-morbid (0.76 vs. 0.75), admission (0.73 vs. 0.78) and 7th day or discharge (0.76 vs. 0.78) assess- ments. For one year outcome in Nordic hospitals, the AUC’s were a bit lower compared to the initial episode (pre-morbid 0.73 vs. 0.76; admission 0.69 vs. 0.73, 7th day or discharge 0.70 vs. 0.76). When comparing AUC’s regarding predicted outcome, the AUC’s were higher for discharge home for Canadian hospitals and higher for adverse outcome for Nordic hospitals. outcome at one year compared to adverse outcome at discharge (pre-morbid 0.71 vs. 0.74; admission 0.66 vs. 0.70; 7th day or discharge (0.68 vs. 0.77) were lower. The AUCs were somewhat higher in logistic models adjusted for sex, age, and reason for hospitalization for one year outcomes (Tables 2 and 3) than when the MAPLe-AC’s were used as continuous variables in the models. The survival models indicate that MAPLe-AC is pre- dictive of days to death (Table 5). Results Males had higher risk of dying sooner than women, as were those having chronic problems, or both a new and an old problem. The higher risk for death was associated with neoplasms and diseases of the respiratory system, but having a diag- nosis of mental and behavioral diseases decreased likeli- hood of death. Having adjusted for all these conditions, MAPLe-AC in all three assessment points still had pre- dictive power for time to death, especially for those in high or very high priority levels. In the pre-morbid assessment point those in moderate priority level also had higher hazard of dying (HR 1.76), and in the 7th day or discharge assessment those in mild (HR 1.78) or mod- erate (HR 1.77) priority level. The hazard ratio of dying increased with each increment in priority level. The AUC’s were also estimated for MAPLe-ACs as continuous variables without adjustment. Table 4 and Figures 2 and 3 present the analyses of ROC curves illu- strated by AUC (c-statistics). The AUC’s for MAPLe- AC as continuous variable varied from (0.71, 0.68, 0.71) for discharge home and (0.74, 0.70, 0.77) for adverse outcome. The AUC’s for one year outcomes, living at home were lower compared to discharge home AUC’s (pre-morbid 0.67 vs. 0.71; admission 0.62 vs. 0.68; 7th day or discharge 0.64 vs. 0.71). AUC’s for adverse Table 4 Predictive accuracy of the MAPLe-AC in predicting discharge and one year outcomes illustrated by Area under ROC curves (c-statistics) Results BMC Medical Informatics and Decision Making 2011, 11:39 http://www.biomedcentral.com/1472-6947/11/39 Table 3 Predicting adverse outcome (death or institutionalization) at discharge and at one year by MAPLe-AC based on pre-morbid, admission and 7th day or discharge information in multivariate regression analyses adjusted for sex, age and reason for hospitalization Table 3 Predicting adverse outcome (death or institutionalization) at discharge and at one year by MAPLe-AC based on pre-morbid, admission and 7th day or discharge information in multivariate regression analyses adjusted for sex, age and reason for hospitalization Table 3 Predicting adverse outcome (death or institutionalization) at discharge and at one year by MAPLe-AC based on pre-morbid, admission and 7th day or discharge information in multivariate regression analyses adjusted for sex, age and reason for hospitalization Adverse outcome at discharge Adverse outcome at one year Nordic hospitals, in 2000-2001 Canadian hospitals, in 2001 Nordic hospitals, in 2000-2001 n 123/640 155/238 281/492 Pre-morbid information OR1 95% CI2 OR 95% CI OR 95% CI Sex (Women = 1) 1.15 0.74 1.78 0.72 0.45 1.15 0.66 0.47 0.92 Age 75-79 1.00 1.00 1.00 Age 80-84 1.21 0.66 2.21 0.92 0.48 1.78 1.02 0.66 1.58 Age 85-89 1.22 0.67 2.25 1.61 0.84 3.07 0.98 0.63 1.53 Age 90+ 1.66 0.87 3.16 2.56 1.23 5.31 1.24 0.75 2.07 Reason for hospitalization New problem 1.00 1.00 1.00 Exacerbation of existing problem 0.83 0.51 1.36 0.64 0.38 1.97 1.27 0.88 1.84 Both new and old problem 1.39 0.83 2.35 1.32 0.67 2.60 1.78 1.16 2.73 MAPLe-AC pre-morbid Low 1.00 1.00 1.00 Mild 3.50 1.36 9.03 1.42 0.62 3.25 2.82 1.62 4.91 Moderate 8.58 4.13 17.83 2.71 1.42 5.16 3.45 2.24 5.31 High 9.39 4.50 19.57 5.15 2.75 9.66 5.03 3.21 7.88 Very high 19.31 8.13 45.87 10.79 4.66 25.00 17.25 7.99 37.20 Admission information OR 95% CI OR 95% CI OR 95% CI Sex (women = 1) 1.06 0.69 1.64 0.81 0.51 1.31 0.64 0.46 0.88 Age 75-79 1.00 1.00 1.00 Age 80-84 1.39 0.77 2.50 1.58 0.81 3.07 1.15 0.76 1.75 Age 85-89 1.23 0.68 2.23 2.34 1.11 4.92 1.03 0.67 1.59 Age 90+ 1.93 1.02 3.65 0.79 0.47 1.34 1.43 0.87 2.36 Reason for hospitalization New problem 1.00 1.00 1.00 Exacerbation of existing problem 1.04 0.65 1.67 0.79 0.47 1.34 1.47 1.03 2.11 Both new and old problem 1.60 0.96 2.67 1.77 0.88 3.55 1.97 1.30 2.99 MAPLe-AC admission Low 1.00 1.00 1.00 Mild 1.97 0.32 12.20 0.42 0.10 1.68 0.89 0.39 2.02 Moderate 5.69 1.34 24.11 1.43 0.61 3.32 1.78 0.99 3.19 High 12.56 2.96 53.29 6.73 2.97 15.24 3.79 2.06 6.98 Very high 22.54 5.06 100.43 8.01 3.23 19.88 7.78 3.70 16.35 7th day or discharge information OR 95% CI OR 95% CI OR 95% CI Sex 1.13 0.73 1.75 0.85 0.52 1.39 0.65 0.47 0.90 Age 75-79 1.00 1.00 1.00 Age 80-84 1.27 0.70 2.33 0.88 0.44 1.77 1.08 0.70 1.65 Age 85-89 1.17 0.64 2.14 1.36 0.68 2.69 1.02 0.66 1.57 Age 90+ 1.65 0.87 3.13 2.12 0.98 4.58 1.26 0.76 2.09 Reason for hospitalization New problem 1.00 1.00 1.00 Exacerbation of existing problem 0.99 0.61 1.61 0.78 0.46 1.35 1.44 1.00 2.06 Both new and old problem 1.41 0.84 2.37 2.00 0.99 4.06 1.82 1.20 2.77 MAPLe-AC 7th day or discharge Noro et al. Discussion Table 4 Predictive accuracy of the MAPLe-AC in predicting discharge and one year outcomes illustrated by Area under ROC curves (c-statistics) Discharge outcome One year outcome Home Adverse outcome Living at home Adverse outcome n 626/137 123/640 426/295 281/492 MAPLe-AC pre- morbid 0.71 0.74 0.67 0.71 MAPLe-AC admission 0.68 0.70 0.62 0.66 MAPLe-AC 7th day or discharge 0.71 0.77 0.64 0.68 MAPLe-AC’s as continuous variables without adjustment in univariate logistic regressions in Nordic sample. The MAPLe-AC algorithm predicts both positive and adverse outcomes and time to death for older people, 75 years of age or older, in acute care at discharge and at one year follow-up, regardless of the country. In addition to cognitive and physical limitations, chronic conditions are of importance with regards to outcomes, especially at one year. The predictive accuracy was higher for out- comes at discharge, but lower for outcomes after one year. There were some differences between Nordic and Canadian hospitals for predicting discharge outcome. The MAPLe-AC predicted slightly better for discharge home outcome for Canadian hospitals, but for Nordic hospitals for adverse outcome at discharge. Page 10 of 14 Noro et al. BMC Medical Informatics and Decision Making 2011, 11:39 http://www.biomedcentral.com/1472-6947/11/39 Noro et al. BMC Medical Informatics and Decision Making 2011, 11:39 http://www.biomedcentral.com/1472-6947/11/39 When case-mix indexes for acute hospital care have cognitive performance are included as they are the basic Discharge Home: MAPLe-AC pre-morbid Adverse outcome on discharge: MAPLe-AC pre-morbid Discharge Home: MAPLe-AC admission Adverse outcome on discharge: MAPLe-AC admission Discharge Home: MAPLe-AC 7th day or discharge Adverse outcome on discharge: MAPLe-AC 7th day or discharge Figure 2 ROC curves for discharge outcomes using MAPLe-AC algorithm as continuous variable without adjustment in logistic regression analysis. Discharge Home: MAPLe-AC pre-morbid Adverse outcome on discharge: MAPLe-AC pre-morbid Discharge Home: MAPLe AC admission Adverse outcome on discharge: MAPLe AC admission Adverse outcome on discharge: MAPLe-AC 7th day or discharge Discharge Home: MAPLe-AC 7 day or discharge Figure 2 ROC curves for discharge outcomes using MAPLe-AC algorithm as continuous variable without adjustment in logistic regression analysis. or discharge outcomes using MAPLe-AC algorithm as continuous variable without adjustment in logistic When case-mix indexes for acute hospital care have been tested and outcomes assessed, one of the most pre- dictive factors has been functional capacity, including both physical and cognitive function [2,15,16,18]. Discussion In cal- culation of the MAPLe-AC algorithm, ADLs and cognitive performance are included as they are the basic classifiers along with behavioral symptoms. In many studies, co-morbidity, falls, incontinence, nutrition, pressure ulcers, and instrumental activities of daily liv- ing (IADLs) have also been found to contribute to the Page 11 of 14 Noro et al. BMC Medical Informatics and Decision Making 2011, 11:39 http://www.biomedcentral.com/1472-6947/11/39 Noro et al. BMC Medical Informatics and Decision Making 2011, 11:39 http://www.biomedcentral.com/1472-6947/11/39 explanation of use of services and outcomes of hospital MAPLe-AC algorithm is not intended to be as a case- Living home at one year: MAPLe-AC pre-morbid Adverse outcome at one year: MAPLe-AC pre-morbid Living home at one year: MAPLe-AC admission Adverse outcome at one year: MAPLe-AC admission Living home at one year: MAPLe-AC 7th day or discharge Adverse outcome at one year: MAPLe-AC 7th day or discharge Figure 3 ROC curves for one year outcome using MAPLe-AC algorithm as continuous variable without adjustment in logistic regression analysis. Adverse outcome at one year: MAPLe-AC pre-morbid Living home at one year: MAPLe-AC pre-morbid Adverse outcome at one year: MAPLe-AC admission Living home at one year: MAPLe-AC admission Adverse outcome at one year: MAPLe-AC 7th day or discharge Living home at one year: MAPLe-AC 7th day or discharge Figure 3 ROC curves for one year outcome using MAPLe-AC algorithm as continuous variable without adjustment in logistic regression analysis. or one year outcome using MAPLe-AC algorithm as continuous variable without adjustment in logistic MAPLe-AC algorithm is not intended to be as a case- mix system, but rather a decision-support tool for allo- cation of geriatric services in acute care. The need for equivalent measures for different care providers to inte- grate the care of frail older people is met by this explanation of use of services and outcomes of hospital care. By using these as hierarchical classifiers, MAPLe- AC takes advantage of standardized data collection and creates a hierarchical priority level decision making tree [20]. Noro et al. Discussion BMC Medical Informatics and Decision Making 2011, 11:39 http://www.biomedcentral.com/1472-6947/11/39 Page 12 of 14 Table 5 Predicting death by Cox-regression models during and after hospital stay in Nordic hospitals among elderly patients (202/561) by MAPLe-AC based on pre-morbid, admission and 7th day or discharge information Table 5 Predicting death by Cox-regression models during and after hospital stay in Nordic hospitals among elderly patients (202/561) by MAPLe-AC based on pre-morbid, admission and 7th day or discharge information Pre-morbid information Admission information 7th day or discharge information Hazard Ratio 95% CI p < Hazard Ratio 95% CI p < Hazard Ratio 95% CI p < Sex (Women = 1) 0.61 0.46 0.46 0.001 0.58 0.44 0.78 0.000 0.60 0.45 0.79 0.000 Age 75-79 1.00 1.00 1.00 Age 80-84 1.17 0.79 0.79 0.428 1.23 0.83 1.83 0.299 1.18 0.80 1.75 0.409 Age 85-89 1.25 0.84 0.84 0.269 1.25 0.84 1.86 0.277 1.23 0.83 1.83 0.306 Age 90+ 1.52 0.99 0.99 0.056 1.56 1.02 2.40 0.042 1.50 0.98 2.30 0.065 Reason for hospitalization New problem 1.00 1.00 1.00 Exacerbation of existing problem 1.46 1.04 1.04 0.028 1.52 1.08 2.12 0.015 1.51 1.08 2.11 0.016 Both new and old problem 1.94 1.34 1.34 0.000 1.98 1.37 2.86 0.000 1.94 1.34 2.81 0.000 MAPLe-AC Low 1.00 1.00 1.00 Mild 1.61 0.94 0.94 0.081 0.85 0.38 1.94 0.706 1.78 1.01 3.14 0.048 Moderate 1.76 1.19 1.19 0.005 1.31 0.76 2.25 0.328 1.77 1.11 2.82 0.017 High 2.82 1.88 1.88 0.000 2.26 1.29 3.94 0.004 2.69 1.67 4.34 0.000 Very high 3.70 2.21 2.21 0.000 2.71 1.44 5.09 0.002 3.63 2.08 6.35 0.000 Diagnoses (ICD-10) Neoplasms 3.21 2.25 2.25 0.000 3.29 2.31 4.70 0.000 3.44 2.41 4.91 0.000 Mental and behavioral diseases 0.43 0.25 0.25 0.003 0.48 0.28 0.84 0.010 0.46 0.26 0.81 0.007 Diseases of the respiratory system 1.59 1.18 1.18 0.003 1.62 1.21 2.17 0.001 1.61 1.20 2.17 0.002 algorithm. Measures of clinical complexity like MAPLe- AC are likely to be associated with quality and costs of care over care pathways. Managing factors contributing to complexity is critical to the independence of elderly people, coordinating and funding services. conditions might change during one year. To adjust for such changes, monitoring during the ensuing year would be needed. In cases where the person enters home care services after hospital discharge this monitor- ing might be more easily provided. Discussion The MAPLe-AC algorithm is created based on functioning irrespective of diagnosis or treatment of the acute condition. However, in the case of older people differentiating between frailty and diagnoses is difficult [30] and thus having informa- tion on both would be helpful. The MAPLe-AC was tested at three different time points and the question is if one of them is more suita- ble for use than another. Pre-morbid status reflects the status when the person was able to live at home, and it sets the baseline that possibly could be reached again after the hospital episode. Admission status has multiple variables that are in a dynamic transition between health, illness, and recovery, so the algorithm is not as stable as it is when it is based on pre-morbid status or on day 7 or discharge status. The discharge assessment is affected by many actions initiated during the hospital stay, and it occurs after a few days of improvement from the acute condition that resulted in the admission. If MAPLe-AC is applied for use as a discharge plan- ning tool in acute care hospitals for determining dis- charge destination it might indicate a better chance to discharge home those in low or mild priority levels at admission. The MAPLe-AC might also act as a stimulus for potential problems and also for highlighting need for rehabilitation and preventive services either during the care episode in hospital or after discharge. However, when MAPLe-AC indicates high or very high priority level, there might be an increased risk of the older per- son to die or end up in long-term institutional care or end up waiting for the next site of care, particularly when informal support networks are not available. Those with moderate or high priority levels might bene- fit from more focused support systems for them and their informal caregiver on discharge. The Area Under ROC curves for MAPLe-AC seem to be higher for discharge status than one year outcomes. They were also higher for adverse outcomes. There may be several reasons for this. Although the MAPLe-AC algorithm does not include information on the acute ill- ness, discharge outcome might be easier to predict due to shorter follow-up time. At one year, especially among older people, several acute episodes either for same or different reason might change the situation of the per- son. Discussion Additionally, chronic illnesses and/or their life A combination of pre-morbid and admission status MAPLe-AC information could be considered for Page 13 of 14 Noro et al. BMC Medical Informatics and Decision Making 2011, 11:39 http://www.biomedcentral.com/1472-6947/11/39 discharge planning - the pre-morbid status to set the priority level that might be achieved on discharge, and admission status which would reflect improvement from worsened admission status because of the acute illness. From the clinician’s point of view, the earliest possible time point is desirable in predicting outcomes for triage and planning care interventions. Using pre-morbid and admission information elderly patients with higher and persistent care needs can be identified in the beginning of the acute care episode. Authors’ contributions d d AN, JWP and JPH designed, AN analyzed and wrote, JWP, JPH provided consultation with statistical methods, HFS, PVJ, GL, MS, JB critically reviewed manuscript, PJV, HFS, GL, MS, JB designed and conducted the Nordic-AC study and JWP and JPH the Canadian study. All authors read and approved the final manuscript. Author details 1A i d S 1Ageing and Services Unit, National Institute for Health and Welfare, P.O. Box 30, FI-00271 Helsinki, Finland. 2Department of Health Studies and Gerontology, University of Waterloo, 200 University Avenue West, Waterloo, N2L 3G1, Canada. 3Homewood Research Institute, 150 Delhi Street, Guelph, ON N1E 6K9, Canada. 4Centre for Medical Knowledge, Unit for Analyses and Comparisons, Stockholm County Council, Högbergsgatan 62, Stockholm (118 91), Sweden. 5Department of Learning, Informatics, Management and Ethics, Karolinska Institutet, Berzelius Väg 3, Stockholm (17177), Sweden. 6Department of Medicine, Diakonhjemmet Hospital, Pb23 Vinderen, Oslo (0319), Norway. 7Geriatric Department, Bispebjerg Hospital, Copenhagen University, Bispebjerg Bakke 23, Copenhagen (2400), Denmark. 8Faculty of Medicine, University of Iceland, Reykjavik, Iceland. 9Geriatric Department, Landspitali University Hospital, Landakot 101, Reykjavik, Iceland. The MAPLe-AC algorithm uses fewer items than in the original MAPLe-HC. The home environment ques- tions, wandering, and dressing were not available in interRAI-AC instrument. The environmental questions are important when planning discharge and should be taken into consideration in addition to MAPLe-AC information, especially after a stroke or a hip fracture and among high and very high priority clients. Further research is needed to define how best to use the information the MAPLe-AC algorithm provides for decision making in clinical practice. The MAPLe-AC algorithm should not be an automatic decision-making tool, but instead provide a chance to combine important information over different periods during the acute hos- pital episode, and provide information for the use of the professionals in the care pathway of the older person with acute illness. List of abbreviations AC A C ADL A AC: Acute Care; ADL: Activities of Daily Living; AUC: Area Under ROC Curve; CI: Confidence Interval; CPS: Cognitive Performance Scale; HC: Home Care; HR: Hazard Ratio; IADL: Instrumental Activities of Daily Living; interRAI-AC: interRAI Acute Care Assessment Instrument; interRAI-HC: interRAI Home Care Assessment Instrument; MAPLe: Method for Assigning Priority Levels; MAPLe- HC: Method for Assigning Priority Levels - Home Care; MAPLe-AC: Method for Assigning Priority Levels - Acute Care; OR: Odds Ratio; ROC: Receiver Operating Curve g y There are some limitations in our study. The data were collected from different hospitals, one in each Nor- dic country and eight in Ontario, Canada. There may be differences in both who and how the patients are admitted to hospital and also regarding discharge what kind of support systems are available in the commu- nities. There are country specific differences in availabil- ity of informal care, which seemed to be higher among older patients in Canadian hospitals. That might reflect to our results in which discharge home had higher pre- dictions (AUC’s where higher) for Canadian than Nordic hospitals. There might be also differences in the overall health of older population in different countries which might affect the results. However, based on the frailty and other risk factors, it seems that the MAPLe-AC algorithm can set priority levels for acute care patients, and there is certain tendency for predicting the dis- charge destination or death during one year. Acknowledgements The authors want to express warm gratitude to the Nordic study researchers: Anna Birna Jensdottir, Iceland; Else Vegnes Grue, Norway; Elisabeth Jonsen and Gosta Bucht, Sweden. researchers: Anna Birna Jensdottir, Iceland; Else Vegnes Grue, Norway; Elisabeth Jonsen and Gosta Bucht, Sweden. Funding for the Nordic study was received from the Nordic Lions Red Feather Fund; The Nordic Council of Ministers; The Roikjer Fund, Denmark; The Finnish Lions Fund, Finland; The Icelandic Lions Fund, Memorial Fund of Helgu Jensdottur and Sigurlia Kristjanssonar, The Reykjavik Hospital Research Fund, The St. Joseph’s Research Fund, Iceland; The Norwegian Medical Society Quality Fund no. 2, Diakonhjemmet Hospital and Diakonhjemmet University College, The Diakonhjemmet Research Fund, Norway; and The Sweden’s Lions Fund, Sweden. Funding for the Canadian study was received from the Health Transition Fund, Health Canada, and Dr. Hirdes participation was supported by an Investigator Award from the Canadian Institutes for Health Research (CIHR). The authors kindly acknowledge interRAI for use of instruments and data. pp y g Health Research (CIHR). The authors kindly acknowledge interRAI for use of instruments and data. Conclusions The MAPLe-AC algorithm may provide support for clinical decisions as early as at admission pointing towards interventions needed to positively modify out- comes of the hospital episode. Information from this kind of tool could also be used in discussing with the older persons the options of care and residence after hospital stay. Use of the algorithm does not compete with but supports actions that need to be taken to make the care episode and discharge successful and by so doing has a real possibility of unifying approach to simi- lar needs and consequently enhancing quality of life of the older person. Decision making tools of this nature require standar- dized assessments and systematic data collection during each acute hospital stay. Active seeking of pre-morbid information is crucial. Well-designed integrated electronic records might be helpful. In cases where earlier admissions exist or home care services are already in use, it is easier to receive relevant information, especially if systematic and integrated assessment systems have been adopted. References 20. Hirdes JP, Poss JW, Curtin-Telegdi N: The Method for Assigning Priority Levels (MAPLe): a new decision-support system for allocating home care resources. BMC Med 2008, 6:9. 1. Campbell SE, Seymour DG, Primrose WP, for the ACMEplus project: A systematic literature review of factors affecting outcome in older medical patients admitted to hospital. Age and Ageing 2004, 33:110-115. 1. Campbell SE, Seymour DG, Primrose WP, for the ACMEplus project: A systematic literature review of factors affecting outcome in older medical patients admitted to hospital. Age and Ageing 2004, 33:110-115. 21. Morris JN, Fries BE, Carpenter GI, Bernabei R: The RAI-HC assessment tool: an international reliability trial. The Gerontologist 1996, 1:67-73. 2. Espallargues M, Philp I, Seymour DG, Campbell SE, Primrose W, Arino S, Dunstan E, Lamura G, Lawson P, Mestheneos E, Politynska B, Raiha I, the ACMEplus project team: Measuring case-mix and outcome for older people in acute care across Europe: the development and potential of the ACMEplus instrument. Q J Med 2008, 101:99-109. 2. Espallargues M, Philp I, Seymour DG, Campbell SE, Primrose W, Arino S, Dunstan E, Lamura G, Lawson P, Mestheneos E, Politynska B, Raiha I, the ACMEplus project team: Measuring case-mix and outcome for older people in acute care across Europe: the development and potential of the ACMEplus instrument. Q J Med 2008, 101:99-109. 22. Landi F, Tua E, Onder G, Carrara B, Sgadari A, Rinaldi C: Minimum Data Set for home-care: A valid instrument to assess frail older people living in the community. Med Care 2000, 38:1184-1190. 23. Morris JN, Fries BE, Mehr DR, Hawes C, Phillips CD, Mor Vl: MDS Cognitive Performance Scale. Journal of Gerontology: Medical Sciences 1994, 49A: M174-182. p 3. Jonsson PV, Noro A, Finne-Soveri H, Jensdottir AB, Ljunggren G, Bucht G, Grue EV, Björnson J, Jonsen E, Schroll M: Admission profile is predictive of outcomes in acute hospital care - A prospective study in five Nordic countries. Aging Clin Exp Res 2008, 20(6):533-539. 24. Morris JN, Fries BE, Morris SA: Scaling ADLs within the MDS. Journal of Gerontology: Medical Sciences 1999, 54A:M546-M553. 4. Miller EA, Weissert WG: Predicting elderly people’s risk for nursing home placement, hospitalization, functional impairment, and mortality: A synthesis. MCR&R 2000, 57:259-297. 25. Morris JN, Fries BE, Bernabei R, Steel K, Ikegami N, Carpenter I, Gilgen R, DuPasquier JN, Frijters D, Henrard JC, Hirdes JP, Belleville-Taylor P: RAI- Home Care (RAI-HC) Manual. Canadian version. Second edition. Competing interests The authors declare that they have no competing interests. The authors declare that they have no competing interests. The authors declare that they have no competing interests. Page 14 of 14 Noro et al. BMC Medical Informatics and Decision Making 2011, 11:39 http://www.biomedcentral.com/1472-6947/11/39 References interRAI Overview Committee; 2002. 5. Jack B, Bickmore T: The Re-Engineered Hospital Discharge Program to Decrease Hospitalization. Care Management 2010, 12-15. 5. Jack B, Bickmore T: The Re-Engineered Hospital Discharge Program to Decrease Hospitalization. Care Management 2010, 12-15. 26. Jonsson PV, Finne-Soveri H, Jensdottir AB, Ljunggren G, Bucht G, Grue EV, Noro A, Björnson J, Jonsén E, Schroll M: Co-morbidity and functional limitation in older patients underreported in medical records in Nordic Acute Care Hospitals when compared to with the MDS-AC instrument. Age and Ageing 2006, 35:434-445. 6. Stuck AE, Siu AL, Wieland GD, Adams J, Rubenstein LZ: Comprehensive geriatric assessment: a meta-analysis of controlled trials. Lancet 1993, 342:1032-6. 6. Stuck AE, Siu AL, Wieland GD, Adams J, Rubenstein LZ: Comprehensive geriatric assessment: a meta-analysis of controlled trials. Lancet 1993, 342:1032-6. 7. Ellis G, Langhorne P: Comprehensive geriatric assessment for older hospital patients. British Medical Bulletin 2005, 71:45-59. 27. Williams TA, Dobb GJ, Finn JC, Webb SAR: Long-term survival from intensive care: a review. Intensive care Med 2005, 31:1306-1315. 27. Williams TA, Dobb GJ, Finn JC, Webb SAR: Long-term survival from intensive care: a review. Intensive care Med 2005, 31:1306-1315. 8. Aminzadeh F, Dalziel WB: Older adults in the emergency department: A systematic review of patterns of use, adverse outcomes, and effectiveness of interventions. Annals of Emergency Medicine 2002, 39:238-247. 28. Bradley AP: The use of the Area Under the ROC curve in the evaluation of machine learning algorithms. Pattern Recognition 1997, 30(7):1145-1159. 29. Fawcett T: An introduction to ROC analysis. Pattern Recognition Letters 2006, 27:861-874. 9. Campbell SE, Seymour DG, Primrose WR, Lynch JE, Dunstan E, Espallargues M, Lamura G, Lawson P, Philp I, Mestheneos E, Politynska B, Raiha I, the ACMEplus project team: A multicentre European study of factors affecting the discharge destination of older people admitted to hospital: analysis of in-hospital data from the ACMEplus project. Age and Ageing 2005, 34:467-475. 30. Bergman H, Ferruci L, Guralnik J, Hogan DB, Hummel S, Karunananthan S, Wolfson C: Frailty: An Emerging Research and Clinical paradigm - Issues and Controversies. J Gerontol A Biol Sci Med Sci 2007, 62(7):731-737. Received: 22 October 2010 Accepted: 7 June 2011 Published: 7 June 2011 19. Hirdes JP, Ljunggren G, Morris JN, Frijters D, Finne-Soveri H, Gray L, Björkgren M, Gilgen R: Reliability of the interRAI suite of assessment instruments: a 12-country study of an integrated health information system. BMC Health Services Research 2008, 8:277. system. BMC Health Services Research 2008, 8:277. Pre-publication history h bl h 10. Shepperd S, Phillips CO, Lannin NA, Clemson LM, McCluskey A, Cameron ID, Barras SL: Discharge planning from hospital to home (Review). The Cochrane Library 2010, , 1: 1-75. The pre-publication history for this paper can be accessed here: http://www.biomedcentral.com/1472-6947/11/39/prepub The pre-publication history for this paper can be accessed here: http://www.biomedcentral.com/1472-6947/11/39/prepub The pre-publication history for this paper can be accessed here: http://www.biomedcentral.com/1472-6947/11/39/prepub 11. Jack B, Greenwald J, Forsythe S, O’Donnell J, Johnson A, Schipelliti L, Goodwin M, Burniske GM, Hesko C, Paasche-Orloq M, Manasseh C, Anthony D, Martin S, Hollister L, Jack M, Jhaveri V, Casey K, Chetty VK: Developing the Tools to Administer a Comprehensive Hospital Discharge Program: The ReEngineered Discharge (RED) Program. In Advances in Patient Safety: New directions and alternative approaches. Performance and tools. AHRQ Publication No 08-0034-3. Volume 3. Edited by: Hendriksen K, Battles JB, Keyes MA, Grady ML. Rockville MO: Agency for Health Care Research and Quality; 2008. doi:10.1186/1472-6947-11-39 Cite this article as: Noro et al.: Method for Assigning Priority Levels in Acute Care (MAPLe-AC) predicts outcomes of acute hospital care of older persons - a cross-national validation. BMC Medical Informatics and Decision Making 2011 11:39. doi:10.1186/1472-6947-11-39 Cite this article as: Noro et al.: Method for Assigning Priority Levels in Acute Care (MAPLe-AC) predicts outcomes of acute hospital care of older persons - a cross-national validation. BMC Medical Informatics and Decision Making 2011 11:39. 12. Halasyamani L, Kripalani S, Coleman E, Schnipper J, van Walavren C, Nagamine J, Torcson P, Bookwalter T, Budnitz T, Manning D: Transition of Care for Hospitalized Elderly Patients - Development of a Discharge Checklist for Hospitalists. Journal of Hospital Medicine 2006, 1(6):354-360. 13. Carpenter GI, Teare GF, Steel K, Berg K, Murphy K, Bjornson J, Jonsson PV, Hirdes JP: A new assessment for elders admitted to acute care: reliability of the MDS-AC. Aging Milano 2001, 13(4):316-30. 14. Rochon PA, Katz JN, Morrow LA, McGinchey-Berroth R, Ahlqvist MM, Sarabati M, Minwker KL: Comorbid illness is associated with survival and length of hospital stay in patients with chronic disability - A prospective comparison of three comorbidity indices. Med Care 1996, 34:1093-1101. Pre-publication history h bl h Submit your next manuscript to BioMed Central and take full advantage of: • Convenient online submission • Thorough peer review • No space constraints or color figure charges • Immediate publication on acceptance • Inclusion in PubMed, CAS, Scopus and Google Scholar • Research which is freely available for redistribution Submit your manuscript at www.biomedcentral.com/submit Submit your next manuscript to BioMed Central and take full advantage of: • Convenient online submission • Thorough peer review • No space constraints or color figure charges • Immediate publication on acceptance • Inclusion in PubMed, CAS, Scopus and Google Scholar • Research which is freely available for redistribution Submit your manuscript at www.biomedcentral.com/submit Submit your next manuscript to BioMed Central and take full advantage of: 15. Covinsky KE, Justice AC, Rosenthal GE, Palmer RM, Landefeld CS: Measuring prognosis and case mix in hospitalized elders. J Gen Intern Med 1997, 12:203-208. 16. Alacron T, Barcena A, Gonzalez-Montalvo JI, Peralosa C, Salgado A: Factors predictive of outcome on admission to an acute geriatric ward. Age and Ageing 1999, 28:429-432. 17. Nardi R, Scanell G, Tragone A, Lolli A, Kalfus P, Baldini A, Ghedini T, Bombarda S, Fiadino L, Di Ciommo S: Difficult hospital discharges in internal medical wards. Intern Emerg Med 2007, 2:95-99. 18. Dunstan EJ, Amar K, Watt A, Seymour DG: First steps in building ACME - an admission case-mix system for the elderly. Age and Ageing 1996, 25:102-108.
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The effect of breaches of the psychological contract on the job satisfaction and wellbeing of doctors in Ireland: a quantitative study
Human resources for health
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Abstract Background:  Medicine is one of the most popular college degrees at both undergraduate and postgraduate level. Despite this, morale and wellbeing in doctors at all levels internationally is reportedly low. Long hours and stressful working environments have been implicated as the cause of this. The psychological contract is the implicit expecta- tions and mutual obligations held between an employee and employer. Breaches in this contract can lead to strong negative emotional responses. This study will examine the psychological contract of non-consultant doctors and gain further insight into their job satisfaction and wellbeing. It aims to ascertain the effect of breaches of the psychological contract on their job satisfaction and wellbeing. Methods:  This is a quantitative study performed using a questionnaire on a closed online forum. Job satisfaction, wellbeing and breaches of the psychological contract were measured using pre-existing and pre-validated scales. Statistical analysis was performed to determine the effect of breaches of the psychological contract on job satisfac- tion and wellbeing. Results:  This study ascertained that training and career development were the most important areas of the psycho- logical contract for non-consultant doctors and training and organizational support the most important breaches. It found, overall, positive levels of job satisfaction and wellbeing. A statistically significant relationship between breaches of the psychological contract and job satisfaction and wellbeing was found. Results:  This study ascertained that training and career development were the most important areas of the psycho- logical contract for non-consultant doctors and training and organizational support the most important breaches. It found, overall, positive levels of job satisfaction and wellbeing. A statistically significant relationship between breaches of the psychological contract and job satisfaction and wellbeing was found. Conclusion:  This study provides an insight into the psychological contract of non-consultant doctors in Ireland. By doing so, it identifies areas for change which may improve their future job satisfaction and wellbeing. Conclusion:  This study provides an insight into the psychological contract of non-consultant doctors in Ireland. By doing so, it identifies areas for change which may improve their future job satisfaction and wellbeing. Keywords:  Job satisfaction, Wellbeing, Psychological contract, Non-consultant doctors appropriately trained staff, rota gaps and reported lack of continuity of care for patients [3, 5, 6]. In the late 1990s and early 2000s  it was hypothesized that changes in job roles, increased medicolegal cases and lack of autonomy were leading to reduced job satisfaction among doctors [7]. © The Author(s) 2020. Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creat​iveco​mmons​.org/licen​ses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creat​iveco​ mmons​.org/publi​cdoma​in/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data. RESEARCH Open Access Abstract Working in an overstretched and under-resourced health system may also lead to the demands of the job outweighing job control and resources, leading to a fur- ther reduction in job satisfaction [8]. Collins and Beauregard Hum Resour Health (2020) 18:89 https://doi.org/10.1186/s12960-020-00534-3 Collins and Beauregard Hum Resour Health (2020) 18:89 https://doi.org/10.1186/s12960-020-00534-3 The effect of breaches of the psychological contract on the job satisfaction and wellbeing of doctors in Ireland: a quantitative study Aedin Collins*  and Alexandra Beauregard Introductionh The delivery of healthcare is constantly changing and evolving, as are the pressures being placed on medi- cal professionals. Within recent years, there has been increasing concern regarding a decline in doctors’ well- being [1–3]. Reported levels of burnout and stress and psychological distress are high [2, 4]. This has mani- fested in difficulties with recruitment and retainment of Postgraduate medical training in Ireland has also gone through significant changes in the last 20  years. The Buttimer report in 2006 identified the need to provide *Correspondence: aedincollins@gmail.com Birkbeck, University of London, Malet St, Bloomsbury, London WC1E 7HX, UK This may be leading to a change from a historical relational contract among doctors to, if not a transac- tional contract, at least a hybrid one. Similarly, while doctors in non-consultant positions and training may have a relational contract with the overall health system in which they plan to work and develop their careers, they move hospitals and departments very regularly— every two to three months in some cases—so within their current workplace they may have a transactional contract [18]. Of doctors who remain in Ireland, over one-third have reported some degree of psychological distress, with depression being reported in 7.1%, anxiety in 6.1% and stress in 9.5% [15]. These levels are significantly higher in non-consultant doctors than in consultants and are 2.5 times that of the general population [15]. The term non-consultant doctors incorporates both doctors in offi- cial training schemes and those working as senior house officers, registrars or fellows in stand-alone posts. fi Ireland has been in a period of austerity since 2008. From 2009 to 2013, funding to the Health Service fell by 3.3 billion euros and staffing levels fell by 10% [8]. This has resulted in a health system under pressure, with reduced bed numbers and rising waiting list times [8]. Non-consultant doctors in Ireland have practised mainly within this time of austerity and within a health system struggling to meet the needs of its population, with sig- nificant reductions in public sector salaries over this time [12].h When one party in the employment relationship fails to fulfil their obligations toward the other, breach is said to occur. Breaches in the psychological contract that have a severe negative emotional effect on the employee are known as violations [19]. In professions other than medicine, psychological contract breach has been associated with decreased work commitment, engagement, trust, job satisfaction and emotional well- being among employees [20]. Breaches are more com- monly seen in the public sector and large organizations [21], but there has to date been very little research on the psychological contract and the potential implica- tions of breach among doctors.h This study will use psychological contract theory as a lens through which to examine determinants of job satisfaction and wellbeing among non-consultant doc- tors in Ireland. Collins and Beauregard Hum Resour Health (2020) 18:89 Page 2 of 8 Page 2 of 8 attractive training facilities with high-quality schemes to result in fully qualified doctors able to deliver the health needs of the population of Ireland [9]. This resulted in the formalization of training agreements with both hospitals and postgraduate training bodies. However, there is no clear career path after the completion of training, with consultant posts not always available at this stage. Ireland currently has the lowest number of consultants per cap- ita in the EU [10]. In addition, Ireland has been amongst the slowest countries in implementing the European Working Time Directive [11]. As a result of that, many Irish doctors still do 24-hour on-call shifts and work in a classic team structure—consultant, registrar and sen- ior house office. This is in contrast with, for example, the NHS, where most junior doctors work in shift patterns. There is a significant issue with retention of doctors in Ireland, the normalization of extreme working hours identified as a key driver of doctor emigration and a key deterrent of repatriation [12, 13] has been implicated as a cause for significant issues with retention of doctors in Ireland [14]. as working overtime will be rewarded in the longer term [17]. Mutual investment by both employee and employer is at the core of a relational contract [16]. In contrast, transactional contracts are considered more common in short-term employment or roles with spe- cific, defined duties, e.g., if an employee works a certain number of hours, they expect a certain amount of pay. An employee with a transactional contract is less likely to work outside their job role, they find the prospect of finding work elsewhere less concerning and they are more likely to move organizations frequently [16, 17]. A third form of psychological contract, known as the hybrid or balanced contract, combines the time frame and mutual rewards of a relational contract with the specified demands of a transactional one [16]. i In one previous study on the psychological contract of doctors, Bunderson described how contracts might change from relational to transactional [18]. Recent research suggests that doctors may no longer view their career as simply a vocation, but instead have expecta- tions of an acceptable work–life balance and appropri- ate financial rewards for the level of effort expended [12]. Job satisfaction S f it Scores for items in the Job Satisfaction Scale are displayed in Table  1. Composite job satisfaction scores have a potential range of 13–78. Results from this cohort ranged from 19 to 74 with a mean of 48 (SD of 11.52), indicating an overall positive level of job satisfaction among non- consultant doctors. For individual items, satisfaction with personal relationships with co-workers scored highest with a mean score of 4.95 (SD 1.04) out of a maximum score of 6. Other high-scoring elements included the ‘work you do’ with a mean of 4.34 (SD 1.33), functioning of work team with a mean of 4.28 (SD 1.25) and coordi- nation of the team with a mean of 4.23 (SD 1.23). Human resource management and hospital/practice manage- ment scored the lowest of the 14 domains with means of 2.52 (SD 1.5) and 2.61 (SD 1.36), respectively. The Flourishing Scale is an indicator of overall psycho- logical wellbeing and contains eight statements describ- ing day-to-day functioning including relationships with peers, feelings of purposefulness, etc., which are meas- ured on a seven-point Likert response scale ranging from strong disagreement to strong agreement. A sample item is, “I actively contribute to the happiness and well-being of others”. Psychological contract breach was assessed with Turn- ley and Feldman’s (1999) 16-item measure. Respondents scored the importance to them of various aspects within the psychological contract (e.g., training, career develop- ment, job security) from 1 to 10. The same items were then scored again according to the amount of each item received from the respondent’s employer compared to how much respondents were led to believe they could Sample and procedure An online survey was shared on a closed Facebook forum for non-consultant doctors in Ireland, of which the author was a member, in the second quarter of 2019. The forum is mainly used for accommodation swaps around times of rotations and other administrative matters. All members are verified by administrators. Ethical approval for the study was granted by the author’s institution and informed consent for participation in the study was sought electronically prior to commencement of the sur- vey. No identifiable information was collected and all data were stored securely. Analysis Descriptive statistics were calculated using SPSS soft- ware. To determine the relationship between breaches in the psychological contract and job satisfaction and well- being, linear regression analysis was conducted. Signifi- cance was predetermined at p < 0.05. Methods expect. Scores ranged from − 2 (much less than prom- ised) to + 2 (much more than promised). Responses were reverse scored so the higher the score, the more significant the breach. The degree of emotional response to the breach, or the degree of violation, was measured by multiplying degree of breach by the importance of each aspect, and then adding this score for all elements together to give a total degree of violation of the psycho- logical contract as a whole [24]. The psychological contract is a widely studied construct within the organizational psychol- ogy literature and refers to the beliefs and expectations held by both employee and employer regarding their mutual obligations within a workplace [16]. Histori- cally, there have been two main forms of psychological contract. Relational contracts are present in long-term employment and associated with employee loyalty and job security, a sense of commitment to an organi- zation and a feeling that short-term sacrifices such This study has two aims. First, to gain insight into the levels of job satisfaction and wellbeing among non-con- sultant doctors in Ireland. Second, to assess the impor- tance of specific elements of the psychological contract to non-consultant doctors in Ireland, to identify the most common breaches and violations, and to examine the effect of psychological contract breach and violation on doctors’ reported job satisfaction and wellbeing. Collins and Beauregard Hum Resour Health (2020) 18:89 Page 3 of 8 Collins and Beauregard Hum Resour Health (2020) 18:89 Measures Job satisfaction was measured using the Aggregate Job Satisfaction Scale [22], a 13-item questionnaire with a six-point Likert response scale. It examines different areas of job satisfaction from work, salary, promotion to teamwork and interrelationships with colleagues. A sam- ple question is, “Please indicate how dissatisfied/satis- fied you are with the promotion opportunities you have.” Due to the specificity of the cohort being studied, some changes were made to the wording of the items, e.g., “company” was replaced by “hospital/clinic”. Results Th There were 340 respondents, 281 of whom provided com- plete responses to the main body of the questionnaire. There were 277 respondents to the demographic sec- tion. The majority of participants (75%) were women and nearly 80% of participants were under 35 years old. The vast majority of respondents (88%) had graduated within the past 9 years, with 44% having graduated within the past 4 years and another 44% having graduated between 5 and 9 years ago. Senior house officers accounted for 32.5% and specialist registrar for 42.5%. The remaining respondents were interns, registrars or post-certificate of completion of speciality training (CCST) fellows. Wellbeing was measured with the Scale of Positive and Negative Experiences (SPANE) and the Flourishing Scale [23]. SPANE looks at how much time one has spent feel- ing six positive (e.g., happy, pleasant) and six negative (e.g., unhappy, unpleasant) emotions within the previous 4 weeks [23]. Each emotion is scored on a five-point scale from 1 = very rarely to 5 = very often and aggregated to form a positive feeling score and a negative feeling score. An overall score known as the ‘affect balance’ is reached by subtracting the negative feeling score from the posi- tive feeling score. The result can vary from − 24 (the most negative) to + 24 (the most positive).h Wellbeing Scores for items in the Flourishing Scale can be seen in Table 2. The highest scoring item was ‘being a good per- son and living a good life’ with a mean score of 5.59 out of 6 (SD 1.11) and the lowest was ‘people respect me’ with a Collins and Beauregard Hum Resour Health (2020) 18:89 Page 4 of 8 Table 1  Demographics % n Gender  Male 23.8 66  Female 75.45 209  Preferred not to answer 0.72 2 Age  18–24 2.53 7  25–34 78.34 217  35–44 18.05 50  > 45 1.08 3 Years post-graduation  0–4 44.04 122  5–9 43.68 121  > 10 12.27 34 Studied medicine as  Undergraduate 69.31 192  Postgraduate 30.69 85 Career stage  Intern 5.42 15  Senior house officer 32.49 90  Registrar 21.66 60  Specialist registrar 33.21 92  Fellow 7.22 20 By subtracting the result of the scale of negative experi- ences from the results of the scale of positive experiences, the affect balance was generated. A negative score shows more time being spent with negative emotions and a positive score shows more time being spent with positive emotions and the potential range is from − 24 to + 24. The responses to this questionnaire ranged from − 23 to + 21, with a mean of 2.4 (SD 7.82), indicating more time spent feeling positive rather than negative emotions. Table 1  Demographics Scores for importance and fulfilment of items in the Psy- chological Contract scale can be seen in Table  3. The most important item identified by non-consultant doc- tors was training with a mean score of 9.26 (SD 1.04). Other important areas identified were career develop- ment with a mean score of 8.79 (SD 1.31) and advance- ment with a mean score of 8.65 (SD 1.36) (Table 4). 122 121 34 192 85 Using Turnley and Feldman’s (1999) process to cal- culate the degree of breach of the psychological con- tract, the degree to which each of the 16 aspects was fulfilled compared to expected was measured on a scale of from − 2 to + 2. For analysis of means, this scale was adapted to a 1–5 Likert scale. Scores of more than 2.5 indicate respondents received as much or more of these items as expected. Scores of less than 2.5 reveal they received less than expected. Wellbeing Results indicate that doctors received more responsibility and job challenge from their employer than they had expected or been promised, with a mean of 3.4 for both (SD 1.05 for responsibility and 0.98 for challenge in job). The lowest scoring item was organi- zational support, with a mean of 1.98 (SD 0.96) indicating that doctors received less support from the organization than they perceived had been promised to them. mean of 4.97 (SD 1.37). The mean individual total score was 42.14 with a standard deviation of 8.84, with scores ranging from 12 to the maximum score of 56. In the Scale of Positive and Negative Experiences, the most commonly reported feelings were ‘good’ and ‘pleas- ant’ with means of 3.53 (SD 0.8) and 3.56 (SD 0.79), respectively. ‘Unpleasant’ received the lowest score with a mean of 2.9 (SD 0.87). Table 2  Job Satisfaction Scale Minimum Maximum Mean SD Variance The personal relationships with your co-workers 1 6 4.94 1.05 1.1 The work you do 1 6 4.36 1.33 1.77 The functioning of your work team 1 6 4.28 1.25 1.55 The coordination among members of your work team 1 6 4.23 1.26 1.59 The opportunities to participate in the decisions that affect your work team 1 6 4 1.35 1.84 The hospital/practice, considered overall 1 6 3.77 1.34 1.79 The promotion opportunities you have 1 6 3.67 1.47 2.17 The salary you get 1 6 3.65 1.38 1.91 The direct supervision you receive 1 6 3.6 1.57 2.45 The physical working conditions you have (light, temperature, noise, etc.) 1 6 3.27 1.54 2.37 The training opportunities provided by your hospital/practice 1 6 3.21 1.49 2.23 The hospital/practice management 1 6 2.61 1.36 1.85 The human resources management in your hospital/practice 1 6 2.52 1.5 2.24 Table 2  Job Satisfaction Scale The weighted degree of breach of the psychological contract was worked out by multiplying the score for the item’s importance by the score for the item’s fulfilment [24]. This weighted degree of breach is equivalent to the level of violation in Turnley and Feldman’s model. The higher the score, the greater the violation, with scores over zero indicating some viola- tion. Scores ranged from − 282 to 210, with an average of 65.4 (SD 67.36). Violation scores can be seen in Table 5. Violations were most prevalent in breaches of provi- sion of training and organizational support, with means of 8.49 (SD 9.7) and 8.91 (SD 8.8), respectively. Despite a wide range in individuals’ total violation scores, the mean of all respondents is positive 65.4. This indicates To calculate the degree of psychological contract vio- lation, all responses to the degree of fulfilment were reverse scored so the higher the response, the more sig- nificant the breach represented. The weighted degree of breach of the psychological contract was worked out by multiplying the score for the item’s importance by the score for the item’s fulfilment [24]. This weighted degree of breach is equivalent to the level of violation in Turnley and Feldman’s model. The higher the score, the greater the violation, with scores over zero indicating some viola- tion. Scores ranged from − 282 to 210, with an average of 65.4 (SD 67.36). Violation scores can be seen in Table 5. The ability of psychological contract breach and viola- tion to predict job satisfaction and wellbeing was deter- mined using linear regression analysis, with breach and violation entered in subsequent steps as the independent variables and job satisfaction, the Flourishing Scale and affect balance as the dependent variables. Breaches of the psychological contract led to statistically significant reductions in job satisfaction and wellbeing as measured by the both the Flourishing Scale and affect balance. Vio- lations did not have a significant effect beyond breach as a predictor. Table 2  Job Satisfaction Scale Collins and Beauregard Hum Resour Health (2020) 18:89 Page 5 of 8 Table 3  Flourishing Scale Minimum Maximum Mean SD I am a good person and live a good life 1 7 5.59 1.11 I am competent and capable in the activities that are important to me 1 7 5.48 1.19 My social relationships are supportive and rewarding 1 7 5.44 1.5 I actively contribute to the happiness and well-being of others 1 7 5.37 1.29 I am engaged and interested in my daily activities 1 7 5.09 1.5 I am optimistic about my future 1 7 5.03 1.59 People respect me 1 7 4.97 1.37 Table 3  Flourishing Scale Table 3  Flourishing Scale To calculate the degree of psychological contract vio- lation, all responses to the degree of fulfilment were reverse scored so the higher the response, the more sig- nificant the breach represented. The weighted degree of breach of the psychological contract was worked out by multiplying the score for the item’s importance by the score for the item’s fulfilment [24]. This weighted degree of breach is equivalent to the level of violation in Turnley and Feldman’s model. The higher the score, the greater the violation, with scores over zero indicating some viola- tion. Scores ranged from − 282 to 210, with an average of 65.4 (SD 67.36). Violation scores can be seen in Table 5. Violations were most prevalent in breaches of provi- sion of training and organizational support, with means of 8.49 (SD 9.7) and 8.91 (SD 8.8), respectively. Despite a wide range in individuals’ total violation scores, the h that violation of the psychological contract is an issue for non-consultant doctors in Ireland (Table 6). The ability of psychological contract breach and viola- tion to predict job satisfaction and wellbeing was deter- mined using linear regression analysis, with breach and violation entered in subsequent steps as the independent variables and job satisfaction, the Flourishing Scale and affect balance as the dependent variables. Breaches of the psychological contract led to statistically significant reductions in job satisfaction and wellbeing as measured by the both the Flourishing Scale and affect balance. Vio- lations did not have a significant effect beyond breach as a predictor. Table 2  Job Satisfaction Scale Discussion This study has examined the degree of job satisfaction and wellbeing experienced by non-consultant doctors in Ireland, the content of their psychological contract Table 4  Importance and  fulfillment of  aspects of the psychological contract Importance Fulfillment Mean SD Mean SD Training 9.26 1.04 2.09 1.02 Career development 8.79 1.31 2.48 0.94 Advancement 8.65 1.36 2.58 0.93 Organizational support 8.64 1.44 1.98 0.96 Supervisory support 8.48 1.47 2.47 1.07 Job security 8.39 1.52 2.64 0.97 Feedback 8.26 1.45 2.24 0.94 Salary 8.15 1.63 2.47 0.84 Decision-making input 8.12 1.37 2.88 1 Bonuses/overtime payments 7.86 2.05 2.27 0.9 Supervisory support 8.48 1.47 2.47 1.07 Retirement benefit 7.84 1.96 2.43 0.84 Regular pay raises 7.84 1.76 2.58 0.84 Challenge in job 7.83 1.48 3.4 0.98 Overall benefits 7.83 1.8 2.25 0.84 Healthcare benefits 7.37 2.16 2.06 0.93 Table 5  Violations of the psychological contract Minimum Maximum Mean SD Organizational support − 20 20 8.91 8.8 Training − 20 20 8.49 9.7 Healthcare benefits − 20 20 7.40 8.01 Feedback − 20 20 6.38 8.34 Bonuses/overtime payments − 16 20 6.14 7.7 Overall benefits − 20 20 6.08 7.39 Retirement benefit − 20 20 4.77 7.41 Career development − 20 20 4.70 8.66 Salary − 20 20 4.69 7.44 Supervisory support − 20 20 4.68 9.56 Advancement − 20 20 3.88 8.53 Regular pay raises − 20 20 3.58 7.32 Job security − 20 20 3.13 8.209 Decision-making input − 20 20 1.13 7.48 Challenge in job − 20 20 − 2.93 7.94 Responsibility − 20 20 − 3.06 8.71 Total − 282 210 65.4 67.36 Table 4  Importance and  fulfillment of  aspects of the psychological contract Importance Fulfillment Mean SD Mean SD Training 9.26 1.04 2.09 1.02 Career development 8.79 1.31 2.48 0.94 Advancement 8.65 1.36 2.58 0.93 Organizational support 8.64 1.44 1.98 0.96 Supervisory support 8.48 1.47 2.47 1.07 Job security 8.39 1.52 2.64 0.97 Feedback 8.26 1.45 2.24 0.94 Salary 8.15 1.63 2.47 0.84 Decision-making input 8.12 1.37 2.88 1 Bonuses/overtime payments 7.86 2.05 2.27 0.9 Supervisory support 8.48 1.47 2.47 1.07 Retirement benefit 7.84 1.96 2.43 0.84 Regular pay raises 7.84 1.76 2.58 0.84 Challenge in job 7.83 1.48 3.4 0.98 Overall benefits 7.83 1.8 2.25 0.84 Healthcare benefits 7.37 2.16 2.06 0.93 Table 4  Importance and  fulfillment of  aspects of the psychological contract Table 5  Violations of the psychological contract Minimum Maximum Mean SD Organizational support − 20 20 8.91 8.8 Training − 20 20 8.49 9.7 Healthcare benefits − 20 20 7.40 8.01 Feedback − 20 20 6.38 8.34 Bonuses/overtime payments − 16 20 6.14 7.7 Overall benefits − 20 20 6.08 7.39 Retirement benefit − 20 20 4.77 7.41 Career development − 20 20 4.70 8.66 Salary − 20 20 4.69 7.44 Supervisory support − 20 20 4.68 9.56 Advancement − 20 20 3.88 8.53 Regular pay raises − 20 20 3.58 7.32 Job security − 20 20 3.13 8.209 Decision-making input − 20 20 1.13 7.48 Challenge in job − 20 20 − 2.93 7.94 Responsibility − 20 20 − 3.06 8.71 Total − 282 210 65.4 67.36 Table 5  Violations of the psychological contract that violation of the psychological contract is an issue for non-consultant doctors in Ireland (Table 6).h To calculate the degree of psychological contract vio- lation, all responses to the degree of fulfilment were reverse scored so the higher the response, the more sig- nificant the breach represented. Job satisfaction Reported levels of overall job satisfaction in this cohort of doctors were reasonably high. Notably, one of the high- est scoring individual attributes in the Job Satisfaction Scale was ‘the work you do’. This is a reassuring finding, given that previous research has identified decreases in job satisfaction arising from the changes in doctors’ role from purely clinical to incorporating more administra- tive duties with correspondingly higher medicolegal risks [7]. The current study, however, suggests that doctors’ day-to-day work is still enjoyed and a positive factor for respondents. Non-consultant doctors’ expectations may also need to be realigned. Increasing transparency from postgraduate training colleges regarding trainee numbers and expec- tations from trainees may help this. Career workshops from an early stage with discussions from varying sub- specialities may also be beneficial. In 2014 the National Training and Development Programme was launched by the HSE. One of the aims of this programme is to stream- line the training of doctors to ensure appropriate work- force planning in the future [26]. This has the potential to be beneficial both for doctors in training and the public at large.i p High levels of satisfaction with teamwork and a func- tioning team dynamic were reported. One benefit of Ireland’s slow implementation of the European Working Time Directive has been that, in many hospitals, a tra- ditionally team-based structure with teams incorporat- ing a consultant, registrar, senior house officer or intern remains in place. This is in contrast to, for example, the UK where the traditional team or ‘firm’-based structure has been eroded due to a shift work pattern and more frequent rotations, as well as the working hours restric- tions of the European Working Time Directive. In the UK, there is a push to bring back some elements of the historic team structure as it is now accepted that team work improves job satisfaction for non-consultant doc- tors [25]. Looking specifically at non-consultant doctors’ percep- tions of their psychological contract, there were some notable findings. The three most important areas within the psychological contract to respondents were train- ing, career development and advancement—all areas associated with long-term careers and a relational psy- chological contract. The most common violations were in organizational support and training. Interestingly, in keeping with this evidence of the importance to doctors of organizational support, the lowest scoring elements of the Job Satisfaction Scale were hospital management and human resources. Discussionh Violations were most prevalent in breaches of provi- sion of training and organizational support, with means of 8.49 (SD 9.7) and 8.91 (SD 8.8), respectively. Despite a wide range in individuals’ total violation scores, the mean of all respondents is positive 65.4. This indicates This study has examined the degree of job satisfaction and wellbeing experienced by non-consultant doctors in Ireland, the content of their psychological contract and the extent to which breaches and violations of the Collins and Beauregard Hum Resour Health (2020) 18:89 Page 6 of 8 Table 6  Hierarchical regression analyses predicting job satisfaction and wellbeing N = 281. *p < 0.05. **p < 0.01. ***p < 0.001 Job satisfaction Flourishing Scale Affect balance Step 1 Step 2 Step 1 Step 2 Step 1 Step 2 Breach − 0.667*** − 0.329 − 0.343*** − 0.642** − 0.378*** − 0.200 Violation − 0.345 0.306 − 0.182 F 223.846*** 113.730*** 37.1*** 19.71*** 46.491*** 23.418*** ∆F 2.451 1.209 0.438 ∆R2 0.005 0.004 0.001 Adjusted R2 0.443*** 0.446 0.114*** 0.115 0.140*** 0.138 Table 6  Hierarchical regression analyses predicting job satisfaction and wellbeing psychological contract predict their job satisfaction and wellbeing. Below, we discuss the significance of our find- ings and place them in the context of the Irish healthcare sector. give healthcare administrators a potentially significant policy lever with which to improve outcomes for doc- tors; tackling the mismatch between expectations and reality for the job-related attributes most important to doctors could result in more positive attitudes and expe- riences of wellbeing, with prospective knock-on effects on retention. Job satisfaction With regard to organizational support, this may be evidence of a mismatch in views between employers and employees of the type of psychological contract that exists between them. Non-consultant doctors are usually transient staff, either rotating through their postgradu- ate placements or on short-term ‘stand-alone’ contracts. Temporary staff usually have a transactional psychologi- cal contract with their employer, expecting little in terms Funding h This research did not receive any funding. Abbreviations CCST C ifi Abbreviations CCST: Certificate of completion of speciality training; SPANE: Scale of positive and negative experiences; SD: Standard deviation. Acknowledgements We thank the Department of Organizational Psychology, Birkbeck, Univer- sity of London and the Royal College of Physicians for their support in this research project. Limitationsh There are some limitations to this study. Firstly, as with any online opt-in questionnaire, there is a possible self- selection bias in sampling. People are more likely to com- plete a survey if they have a strong opinion or problem to voice about the issue at hand, and this may be particularly the case when discussing one’s workplace. This sampling bias may lead to more negative views being expressed than would be the case among the entire population of non-consultant doctors in Ireland. In addition, people are more likely to recall negative experiences and results than positive ones [28]. The results of this study were, however, largely positive for job satisfaction and wellbe- ing, and scores for these were higher than those found in comparable studies [15]. The large cohort of respondents has likely negated some of this negative bias.h Authors’ contributions AC designed the study, processed the initial data and performed initial analy- sis of data. AC drafted the initial manuscript. AB contribute to the analysis of the results and writing of the manuscript. All authors read and approved the final manuscript. Conclusion Th h fi This is the first study to examine the interplay of job satis- faction, wellbeing and the psychological contract of doc- tors in Ireland. It looks specifically at areas of importance to doctors within their psychological contracts and the extent to which they perceive that these contracts have been breached by their employers. Providing insight into the job-related expectations of non-consultant doc- tors in Ireland, this study demonstrates a clear mismatch between what doctors expect and what they receive. It identifies specific areas where expectations are not being met, such as organizational support and HR manage- ment, and highlights the need for improvements in train- ing and career advancement opportunities. Finally, this study reveals a negative effect of mismatches between expectations and reality on doctors’ job satisfaction and wellbeing. Future research and policy initiatives can build on these findings to explore ways to resolve psychological contract breach in the areas identified here, improving outcomes for doctors and potentially for the healthcare system as a whole. With regard to training, despite the formalization of training agreements with postgraduate bodies and hos- pitals since the Buttimer report [9], the current study reveals that training is still of utmost importance to Irish non-consultant doctors and remains an area where they feel their expectations are not being met. This cor- responds with research by Bennett et al. who found that training experiences in Ireland still fall below that availa- ble to non-consultant doctors elsewhere in the European Union [27]. The psychological contract of non‑consultant doctorshi p y g The findings of this study make clear that psychological contract breach has a direct, negative association with job satisfaction and wellbeing for doctors, echoing the results of previous research conducted with employees outside the healthcare sector [21]. The current findings Collins and Beauregard Hum Resour Health (2020) 18:89 Page 7 of 8 not developed solely for healthcare professionals, nor had they been validated on medical staff. Hence, there is potential for unique areas of doctors’ psychological con- tracts, job satisfaction and wellbeing to have been missed. of long-term rewards or development [16]. However, despite staying for a relatively short time in each post, it is clear from this study that career progression and train- ing—more relational aspects of a psychological contract [16]—are of utmost importance to non-consultant doc- tors in Ireland. The disparity may lie here. The dispar- ity may lie here. Despite the temporary contracts with individual hospitals, the doctors see their psychological contract with the health service as a whole and intend to work within that health service over a prolonged period of time—a relational contract. However, in the individual work place these are temporary staff—a transactional contract, in that the hospital administration may see their relationship with a non-consultant doctor as trans- actional, but the doctor views it as relational. Doctors may not feel the support in their long-term careers from employers and as such feel like they are managing their career progression in isolation, leading to a negative rela- tionship between the doctor and hospital. Consent for publication Not applicable. Consent for publication Not applicable. Availability of datasets h d d d The datasets used and/or analysed during the current study are available from the corresponding author on reasonable request. Ethics approval and consent to participate pp p p Ethical approval was granted from Birkbeck, University of London. Consent for participation and publication in the study was sought electronically prior to commencement of the questionnaire. The use of a survey on an open forum also has some limitations. Those non-consultant doctors who do not know about or have access to this forum were automati- cally excluded. However, it did serve as a means to ensure responses from a diverse group, with respondents from every level of training, varying age ranges and varying years since graduation. Finally, the measures used were References 1. Cullen P. Half of Ireland’s hospital doctors exhausted and overwhelmed by work. Irish Times. 2019. https​://www.irish​times​.com/news/healt​h/ half-of-irela​nd-s-hospi​tal-docto​rs-exhau​sted-and-overw​helme​d-by- work-1.38234​88. 1. Cullen P. Half of Ireland’s hospital doctors exhausted and overwhelmed by work. Irish Times. 2019. https​://www.irish​times​.com/news/healt​h/ half-of-irela​nd-s-hospi​tal-docto​rs-exhau​sted-and-overw​helme​d-by- work-1.38234​88. 1. Cullen P. Half of Ireland’s hospital doctors exhausted and overwhelmed by work. Irish Times. 2019. https​://www.irish​times​.com/news/healt​h/ half-of-irela​nd-s-hospi​tal-docto​rs-exhau​sted-and-overw​helme​d-by- work-1.38234​88. 16. Rousseau DM. Psychological contracts in the workplace: Understanding the ties that motivate. Acad Manag Perspect. 2004;18(1):120–7. 17. Rousseau DM. New hire perceptions of their own and their employer’s obligations: a study of psychological contracts. J Organ Behav. 1988;1990(11):389–400. 2. Hayes B, Prihodova L, Walsh G, Doyle F, Doherty S. What’s up doc ? A national cross- sectional study of psychological wellbeing of hospital doctors in Ireland. BMJ open. 2017;7(10):e018023. 2. Hayes B, Prihodova L, Walsh G, Doyle F, Doherty S. What’s up doc ? A national cross- sectional study of psychological wellbeing of hospital doctors in Ireland. BMJ open. 2017;7(10):e018023. 18. Bunderson JS. How work ideologies shape the psychological contracts of professional employees: doctors’ responses to perceived breach. J Organ Behav. 2001;22(7):717–41. 3. Kumar S. Burnout and doctors: prevalence, prevention and intervention. Healthc (Basel, Switzerland). 2016;4(3). https​://www.ncbi.nlm.nih.gov/ pubme​d/27417​625. https​://www.pubme​dcent​ral.nih.gov/artic​leren​der. fcgi?artid​=PMC50​41038​. 19. Morrison EW, Robinson SL. When employees feel betrayed: a model of how psychological contract violation develops. Acad Manag Rev. 1997;22(1):226–56. 4. Bragard I, Dupuis G, Fleet R. Quality of work life, burnout, and stress in emergency department physicians: a qualitative review. Eur J Emerg Med. 2015;22(4):227–34. 20. Conway N, Guest D, Trenberth L. Testing the differential effects of changes in psychological contract breach and fulfillment. J Vocat Behav. 2011;79(1):267–76. https​://doi.org/10.1016/j.jvb.2011.01.003. 5. Pathman DE, Konrad TR, Williams ES, Scheckler WE, Linzer M, Douglas J. Physician job satisfaction, dissatisfaction, and turnover. J Fam Pract. 2002;51(7):593. 21. Guest DE, Conway N. Communicating the psychological contract: an employer perspective. Hum Resour Manag J. 2002;12(2):22–38. 21. Guest DE, Conway N. Communicating the psychological contract: an employer perspective. Hum Resour Manag J. 2002;12(2):22–38. 22. González-Romá V, Hernández A. Uncovering the dark side of innovation: the influence of the number of innovations on work teams’ satisfaction and performance. Eur J Work Organ Psychol. 2016;25(4):570–82. 6. Haas JS, Cook EF, Puopolo AL, Burstin HR, Cleary PD, Brennan TA. Is the professional satisfaction of general internists associated with patient satisfaction? J Gen Intern Med. 2000;15(2):122–8. 23. Diener E, Wirtz D, Tov W, Kim-Prieto C, Choi D-W, Oishi S, et al. Competing interests Competing interests The authors declare that they have no competing interests. p g The authors declare that they have no competing interests. Page 8 of 8 Page 8 of 8 Collins and Beauregard Hum Resour Health (2020) 18:89 Collins and Beauregard Hum Resour Health (2020) 18:89 Collins and Beauregard Hum Resour Health (2020) 18:89 Received: 11 June 2020 Accepted: 3 November 2020 References Failing to retain a new generation of doctors: qualitative insights from a high-income country. BMC Health Serv Res. 2018;18(1):144. Received: 11 June 2020 Accepted: 3 November 2020 14. Humphries N, McDermott AM, Conway E, Byrne JP, Prihodova L, Costello R, et al. “Everything was just getting worse and worse”: deteriorating job quality as a driver of doctor emigration from Ireland. Hum Resour Health. 2019;17(1):1–11. 15. Hayes B, Prihodova L, Walsh G, Doyle F, Doherty S. What’s up doc? A national cross-sectional study of psychological wellbeing of hospital doc- tors in Ireland. BMJ Open. 2017;7(10):e018023. References new well- being measures : short scales to assess flourishing and positive and nega- tive feelings. Soc Indic Res Soc Indie Res. 2016;97(2):143–56. Available from: https​://www.jstor​.org/stabl​e/40649​361. https​://www.jstor​.org/stabl​ e/40649​361?seq=1&cid=pdf-refer​ence#refer​ences​_tab_conte​nts. https​ ://about​.jstor​.org/terms​. 7. Zuger A. Dissatisfaction with medical practice. New Engl J Med. 2004;350(1):69–75. 8. Thomas S, Burke S, Barry S. The Irish health-care system and austerity: sharing the pain. Lancet. 2014;383(9928):1545–6. 8. Thomas S, Burke S, Barry S. The Irish health-care system and austerity: sharing the pain. Lancet. 2014;383(9928):1545–6. 9. Buttimer J. Preparing Ireland’s doctors to meet the health needs of the 21st century [Internet]. 2006. https​://healt​h.gov.ie/blog/publi​catio​ns/ prepa​ring-irela​nds-docto​rs-to-meet-the-healt​h-needs​-of-the-21st-centu ry-butti​mer-repor​t/. 9. Buttimer J. Preparing Ireland’s doctors to meet the health needs of the 21st century [Internet]. 2006. https​://healt​h.gov.ie/blog/publi​catio​ns/ prepa​ring-irela​nds-docto​rs-to-meet-the-healt​h-needs​-of-the-21st-centu​ ry-butti​mer-repor​t/. j g 24. Turnley WH, Feldman DC. The impact of psychological contract violations on exit, voice, loyalty, and neglect. J Hum Relat. 1999;52(7):895–922. 25. Rimmer A. The firm: Does it hold the answers to teamworking and morale? BMJ. 2019;365(June):1–3. https​://doi.org/10.1136/bmj.l4105​. 26. HSE. National doctors training & planning strategic plan 2016–2020. 2016. 27. Bennett D, Dornan T, Bergin C, Horgan M. Postgraduate training in Ireland: expectations and experience. Irish J Med Sci (1971-). 2014;183(4):611–20. 28. Rozin P, Royzman EB. Negativity bias, negativity dominance, and conta- gion. Pers Soc Psychol Rev. 2001;5(4):296–320. 24. Turnley WH, Feldman DC. The impact of psychological contract violations on exit, voice, loyalty, and neglect. J Hum Relat. 1999;52(7):895–922.i y y g 25. Rimmer A. The firm: Does it hold the answers to teamworking and morale? BMJ. 2019;365(June):1–3. https​://doi.org/10.1136/bmj.l4105​. 10. Cullen P. Waiting lists to grow if ‘brain drain’ of doctors leaving not halted, says IHCA. The Irish Times [Internet]. 2019. https​://www.irish​times​.com/ news/healt​h/waiti​ng-lists​-to-grow-if-brain​-drain​-of-docto​rs-leavi​ng-not- halte​d-says-ihca-1.39200​97. p g j 26. HSE. National doctors training & planning strategic plan 2016–2020. 2016. 27. Bennett D, Dornan T, Bergin C, Horgan M. Postgraduate training in Ireland: expectations and experience. Irish J Med Sci (1971-). 2014;183(4):611–20. 27. Bennett D, Dornan T, Bergin C, Horgan M. Postgraduate training in Ireland: expectations and experience. Irish J Med Sci (1971-). 2014;183(4):611–20. 11. Maybury C. The European working time directive: a decade on. Lancet. 2014;384(9954):1562–3. https​://doi.org/10.1016/S0140​-6736(14)61972​-3. 28. Rozin P, Royzman EB. Negativity bias, negativity dominance, and conta- gion. Pers Soc Psychol Rev. 2001;5(4):296–320. 28. Rozin P, Royzman EB. Negativity bias, negativity dominance, and conta- gion. Pers Soc Psychol Rev. 2001;5(4):296–320. 12. Humphries N, Crowe S, Brugha R. Publisher’s Note 13. Clarke N, Crowe S, Humphries N, Conroy R, O’Hare S, Kavanagh P, Brugha R. Factors influencing trainee doctor emigration in a high income coun- try: a mixed methods study. Human Resour Health. 2017;15(1):66. 13. Clarke N, Crowe S, Humphries N, Conroy R, O’Hare S, Kavanagh P, Brugha R. Factors influencing trainee doctor emigration in a high income coun- try: a mixed methods study. Human Resour Health. 2017;15(1):66. Springer Nature remains neutral with regard to jurisdictional claims in pub- lished maps and institutional affiliations. Springer Nature remains neutral with regard to jurisdictional claims in pub- lished maps and institutional affiliations. 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https://orca.cardiff.ac.uk/id/eprint/137122/1/PIIS221112472031490X.pdf
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CD57+ Memory T Cells Proliferate In Vivo
Cell reports
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Authors Correspondence priced6@cardiff.ac.uk (D.A.P.), macallan@sgul.ac.uk (D.C.M.), b.asquith@imperial.ac.uk (B.A.), ladellk@gmail.com (K.L.) Report Report In Brief In vitro studies have led to the widely held assumption that replicatively senescent memory T cells express the carbohydrate epitope CD57. Using a variety of experimental approaches and mathematical modeling of composite datasets, Ahmed et al. show that CD57+ memory T cells proliferate and self-renew in vivo. CD57+ Memory T Cells Proliferate In Vivo Graphical Abstract Authors Raya Ahmed, Kelly L. Miners, Julio Lahoz-Beneytez, ..., Derek C. Macallan, Becca Asquith, Kristin Ladell CD57+ Memory T Cells Proliferate In Vivo CD57+ Memory T Cells Proliferate In Vivo CD57+ Memory T Cells Proliferate In Vivo INTRODUCTION et al., 2006; Chattopadhyay et al., 2009; Chong et al., 2008; Kern et al., 1999; Le Priol et al., 2006; Takata and Takiguchi, 2006; van Leeuwen et al., 2002). Virus-specific memory T cells have also been identified in the TEMRA compartment (Appay et al., 2008). In the CD8+ lineage, these cells have been associ- ated with protective effects, most notably during acute (North- field et al., 2007) and chronic human immunodeficiency virus type 1 (HIV-1) infection (Addo et al., 2007), and in a study of elite controllers with eventual disease progression, increasing levels of viral replication appeared to drive the formation of CD28CD57+ memory CD8+ T cells, potentially indicating a reactive escalation in the cytotoxic response to HIV-1 (Benito et al., 2018). Accordingly, CD57+ memory T cells enrich the im- mune system with important antigen-dependent effector func- tions and, by extension, do not necessarily represent an irrele- vant ‘‘cul-de-sac’’ in the lymphocyte differentiation pathway. et al., 2006; Chattopadhyay et al., 2009; Chong et al., 2008; Kern et al., 1999; Le Priol et al., 2006; Takata and Takiguchi, 2006; van Leeuwen et al., 2002). Virus-specific memory T cells have also been identified in the TEMRA compartment (Appay et al., 2008). In the CD8+ lineage, these cells have been associ- ated with protective effects, most notably during acute (North- field et al., 2007) and chronic human immunodeficiency virus type 1 (HIV-1) infection (Addo et al., 2007), and in a study of elite controllers with eventual disease progression, increasing levels of viral replication appeared to drive the formation of CD28CD57+ memory CD8+ T cells, potentially indicating a reactive escalation in the cytotoxic response to HIV-1 (Benito et al., 2018). Accordingly, CD57+ memory T cells enrich the im- mune system with important antigen-dependent effector func- tions and, by extension, do not necessarily represent an irrele- vant ‘‘cul-de-sac’’ in the lymphocyte differentiation pathway. Immune senescence has been linked with the accumulation of terminally differentiated lymphocytes that fail to proliferate in response to antigenic challenge. It has also been suggested that surface expression of CD57, a terminally sulfated glycan carbohydrate epitope (Abo and Balch, 1981), identifies memory T cells that lack the capacity to proliferate (Brenchley et al., 2003). In line with these widely accepted paradigms, highly differentiated effector memory T cells that express CD45RA, known as TEMRA cells, become more prevalent with age (Nociari et al., 1999) and often express CD57 (Ladell et al., 2008). SUMMARY A central paradigm in the field of lymphocyte biology asserts that replicatively senescent memory T cells ex- press the carbohydrate epitope CD57. These cells nonetheless accumulate with age and expand numerically in response to persistent antigenic stimulation. Here, we use in vivo deuterium labeling and ex vivo analyses of telomere length, telomerase activity, and intracellular expression of the cell-cycle marker Ki67 to distin- guish between two non-exclusive scenarios: (1) CD57+ memory T cells do not proliferate and instead arise via phenotypic transition from the CD57 memory T cell pool; and/or (2) CD57+ memory T cells self-renew via intracompartmental proliferation. Our results provide compelling evidence in favor of the latter scenario and further suggest in conjunction with mathematical modeling that self-renewal is by far the most abundant source of newly generated CD57+ memory T cells. Immunological memory therefore appears to be intrinsi- cally sustainable among highly differentiated subsets of T cells that express CD57. p CD57+ Memory T Cells Proliferate In Vivo Raya Ahmed,1,10 Kelly L. Miners,2,10 Julio Lahoz-Beneytez,3,10 Rhiannon E. Jones,4 Laureline Roger,2 Christina Baboonian,1 Yan Zhang,1 Eddie C.Y. Wang,2 Marc K. Hellerstein,5 Joseph M. McCune,6 Duncan M. Baird,4 David A. Price,2,7,10,* Derek C. Macallan,1,8,10,* Becca Asquith,3,10,* and Kristin Ladell2,9,10,11,* 1Institute for Infection and Immunity, St. George’s, University of London, London SW17 0RE, UK 2Division of Infection and Immunity, Cardiff University School of Medicine, Heath Park, Cardiff CF14 4XN, UK 3Department of Infectious Disease, Imperial College London, London W2 1PG, UK 4Division of Cancer and Genetics, Cardiff University School of Medicine, Heath Park, Cardiff CF14 4XN, UK 5Department of Nutritional Sciences and Toxicology, University of California, Berkeley, CA 94720, USA 6HIV Frontiers Program, Global Health Innovative Technology Solutions, Bill & Melinda Gates Foundation, Seattle, WA 98109, USA 7Systems Immunity Research Institute, Cardiff University School of Medicine, Heath Park, Cardiff CF14 4XN, UK 8St George’s University Hospitals NHS Foundation Trust, London SW17 0QT, UK 9Neonatal Unit, Singleton Hospital, Swansea Bay University Health Board, Swansea SA2 8QA, UK 10These authors contributed equally 11Lead Contact 11Lead Contact *Correspondence: priced6@cardiff.ac.uk (D.A.P.), macallan@sgul.ac.uk (D.C.M.), b.asquith@imperial.ac.uk (B.A.), ladellk@gmail.com (K.L.) https://doi.org/10.1016/j.celrep.2020.108501 Cell Reports 33, 108501, December 15, 2020 ª 2020 The Authors. 1 This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/). ll OPEN ACCESS Cell Reports 33, 108501, December 15, 2020 ª 2020 The Authors. 1 under the CC BY license (http://creativecommons.org/licenses/by/4.0/). Lead Contact *Correspondence: priced6@cardiff.ac.uk (D.A.P.), macallan@sgul.ac.uk (D.C.M.), b.asquith@imperial.ac.uk (B.A.), ladellk@gmail.com (K.L.) https://doi.org/10.1016/j.celrep.2020.108501 Highlights Highlights Highlights d CD57+ memory T cells are not replicatively senescent in vivo d CD57+ memory T cells are not replicatively senescent in viv d CD57+ memory T cells are maintained primarily via self- renewal in vivo Ahmed et al., 2020, Cell Reports 33, 108501 December 15, 2020 ª 2020 The Authors. https://doi.org/10.1016/j.celrep.2020.108501 ll ll Figure 1. CD57 and CD57+ Memory T Cells Exhibit Similar Rates of Deuterium Incorporation (A) Schematic representation of the 2H2O labeling protocol and sampling time points. (B) Experimental labeling data for CD57 and CD57+ memory CD8+ T cells sampled from the HIV-1-infected volunteers in cohort 1. The corresponding flow cytometric gating strategy is shown in Figure S1. (C) Successive panels depict the flow cytometric gating strategy used to sort CD57 and CD57+ memory T cells from the CD4+ and CD8+ lineages (cohort 2). Lymphocytes were identified in a forward scatter-area versus side scatter-area plot, and single cells were identified in a forward scatter-area versus forward scatter-height plot. Boolean gates were drawn for analysis only to exclude fluorochrome aggregates. Viable CD3+CD14CD19 cells were then identified in the CD4+ and CD8+ lineages, and sort gates were fixed on CD57 and CD57+ memory cells after exclusion of potentially naive CD27brightCD45RO cells. (D) Experimental labeling data for CD57 and CD57+ memory CD4+ T cells sampled from the healthy volunteers in cohort 2. (E) Experimental labeling data for CD57 and CD57+ memory CD8+ T cells sampled from the healthy volunteers in cohort 2. RESULTS To corroborate these findings, we measured the expression of Ki67, an intracellular marker that accumulates during active phases of the cell cycle (Gerdes et al., 1983; Miller et al., 2018). Cytosolic expression of Ki67 was detected in the CD4+ lineage at mean frequencies of 1% among CD57 memory T cells and 2.9% among CD57+ memory T cells (p = 0.02, paired samples Wil- coxon test; Figures 2A and 2B) and in the CD8+ lineage at mean frequencies of 0.7% among CD57 memory T cells and 0.4% among CD57+ memory T cells (p = 0.008, paired samples Wil- coxon test; Figures 2A and 2B). Higher frequencies were observed using a different approach that simultaneously exposed intranu- clear antigens. Cytosolic/nuclear expression of Ki67 was detected in the CD4+ lineage at mean frequencies of 4.9% among CD57 memory T cells and 8.6% among CD57+ memory T cells (p = 0.742, paired samples Wilcoxon test; Figures 2C and 2D) and in the CD8+ lineage at mean frequencies of 1.2% among CD57 memory T cells and 1.9% among CD57+ memory T cells (p = 0.039, paired samples Wilcoxon test; Figures 2E and 2F). CD57 and CD57+ Memory T Cells Exhibit Similar Rates of Deuterium Incorporation Preliminary in vivo labeling data were derived from studies of volunteers with chronic HIV-1 infection (aged 36–53 years), all of whom were antiretroviral drug-free at the time of experimen- tation and seropositive for cytomegalovirus (CMV; n = 4; Table S1). The labeling protocol is outlined in Figure 1A. Venous blood was sampled at weeks 7 (end of labeling), 10, 14, and 18, and at each time point, CD57 and CD57+ memory CD8+ T cells were flow-sorted from the CD45RACCR7 subset at >98% purity (Figure S1). This gating strategy was designed to exclude TEMRA cells, which were assessed separately in an earlier report (La- dell et al., 2008). Considerable rates of 2H labeling and delabel- ing were observed among CD45RACCR7CD57 and CD45RACCR7CD57+ memory CD8+ T cells (Figure 1B). Immune activation enhances the turnover of memory T cells in the setting of chronic HIV-1 or HIV-2 infection (Hegedus et al., 2014; McCune et al., 2000; Vrisekoop et al., 2015; Zhang et al., 2013). We therefore sought to confirm these preliminary findings in a more comprehensive labeling study of healthy volunteers (aged 29–83 years), all of whom were seronegative for HIV-1 and seropositive for CMV. RESULTS Recruitment was stratified to include equal numbers of young (aged 29–47 years) and elderly individ- uals (aged 60–83 years), the latter representing a population in which immune senescence was more likely (total n = 8; Table S1). Venous blood was sampled during the labeling phase (weeks 1, 3, and 5), at the end of labeling (week 7), and during the delabeling phase (weeks 8, 10, 14, and 18) (Figure 1A). At each time point, CD57 and CD57+ memory T cells were flow- sorted from the CD4+ and CD8+ lineages at >98% purity after gating out potentially naive CD27brightCD45RO events (Fig- ures 1C and S1). INTRODUCTION Contrary to the notion of differentiation-linked senescence, memory T cells that express CD57 can be induced to proliferate in vitro, at least under optimized conditions (Chong et al., 2008; Izquierdo et al., 1990). Parallel strands of evidence have further suggested a key role for these cells as immune effectors. For example, memory CD8+ T cells rarely express CD57 in conjunc- tion with programmed death-1 (PD-1) (Petrovas et al., 2009), a marker associated with exhaustion (Day et al., 2006; Freeman et al., 2006; Petrovas et al., 2006; Trautmann et al., 2006), and functionally replete memory CD4+ and CD8+ T cells with cyto- toxic potential typically express high levels of CD57 (Casazza In this study, we used deuterium labeling to quantify the prolif- eration of CD57 and CD57+ memory T cells in vivo and supple- mented these analyses with ex vivo measurements of telomere length, telomerase activity, and intracellular expression of the cell-cycle marker Ki67. We then used mathematical modeling to evaluate two non-exclusive hypothetical scenarios: (1) CD57+ memory T cells arise from the CD57 memory T cell A C D E B Re ll OPEN ACCESS Report A B A B B C C C D D E E E E 2 Cell Reports 33, 108501, December 15, 2020 ll OPEN ACCESS Report lineage or intrasubset differences in the kinetics of 2H accumula- tion or loss were apparent between young and elderly volunteers (Figures 1D and 1E). compartment as a consequence of progressive differentiation; and/or (2) CD57+ memory T cells self-renew via intracompart- mental proliferation and thereby contribute to long-term immu- nological memory. Ki67+ Cells Are Readily Detectable in the CD57+ Memory T Cell Pool lineage or intrasubset differences in the kinetics of 2H accumula- tion or loss were apparent between young and elderly volunteers (Figures 1D and 1E). CD57 and CD57+ Memory T Cells Exhibit Similar Rates of Deuterium Incorporation Preliminary in vivo labeling data were derived from studies of volunteers with chronic HIV-1 infection (aged 36–53 years), all of whom were antiretroviral drug-free at the time of experimen- tation and seropositive for cytomegalovirus (CMV; n = 4; Table S1). The labeling protocol is outlined in Figure 1A. Venous blood was sampled at weeks 7 (end of labeling), 10, 14, and 18, and at each time point, CD57 and CD57+ memory CD8+ T cells were flow-sorted from the CD45RACCR7 subset at >98% purity (Figure S1). This gating strategy was designed to exclude TEMRA cells, which were assessed separately in an earlier report (La- dell et al., 2008). Considerable rates of 2H labeling and delabel- ing were observed among CD45RACCR7CD57 and CD45RACCR7CD57+ memory CD8+ T cells (Figure 1B). Preliminary in vivo labeling data were derived from studies of volunteers with chronic HIV-1 infection (aged 36–53 years), all of whom were antiretroviral drug-free at the time of experimen- tation and seropositive for cytomegalovirus (CMV; n = 4; Table S1). The labeling protocol is outlined in Figure 1A. Venous blood was sampled at weeks 7 (end of labeling), 10, 14, and 18, and at each time point, CD57 and CD57+ memory CD8+ T cells were flow-sorted from the CD45RACCR7 subset at >98% purity (Figure S1). This gating strategy was designed to exclude TEMRA cells, which were assessed separately in an earlier report (La- dell et al., 2008). Considerable rates of 2H labeling and delabel- ing were observed among CD45RACCR7CD57 and CD45RACCR7CD57+ memory CD8+ T cells (Figure 1B). flow-sorted from the CD45RA CCR7 subset at >98% purity (Figure S1). This gating strategy was designed to exclude TEMRA cells, which were assessed separately in an earlier report (La- dell et al., 2008). Considerable rates of 2H labeling and delabel- ing were observed among CD45RACCR7CD57 and CD45RACCR7CD57+ memory CD8+ T cells (Figure 1B). Immune activation enhances the turnover of memory T cells in the setting of chronic HIV-1 or HIV-2 infection (Hegedus et al., 2014; McCune et al., 2000; Vrisekoop et al., 2015; Zhang et al., 2013). We therefore sought to confirm these preliminary findings in a more comprehensive labeling study of healthy volunteers (aged 29–83 years), all of whom were seronegative for HIV-1 and seropositive for CMV. CD57 and CD57+ Memory T Cells Exhibit Similar Rates of Deuterium Incorporation Recruitment was stratified to include equal numbers of young (aged 29–47 years) and elderly individ- uals (aged 60–83 years), the latter representing a population in which immune senescence was more likely (total n = 8; Table S1). Venous blood was sampled during the labeling phase (weeks 1, 3, and 5), at the end of labeling (week 7), and during the delabeling phase (weeks 8, 10, 14, and 18) (Figure 1A). At each time point, CD57 and CD57+ memory T cells were flow- sorted from the CD4+ and CD8+ lineages at >98% purity after gating out potentially naive CD27brightCD45RO events (Fig- ures 1C and S1). In further analyses, we assessed the phenotypic characteris- tics of Ki67+CD57 and Ki67+CD57+ memory T cells in the CD4+ and CD8+ lineages. As expected, Ki67+ memory CD4+ T cells predominantly expressed CD45RO, with or without CD57, whereas Ki67+ memory CD8+ T cells were phenotypically more heterogeneous and often expressed CD45RA in conjunc- tion with CD57 (Figure 2G). Moreover, Ki67+CD57 memory T cells expressed CD28 at higher frequencies than Ki67+CD57+ memory T cells, both in the CD4+ lineage (p = 0.008, paired samples Wilcoxon test; Figures 2D and 2H) and in the CD8+ lineage (p = 0.008, paired samples Wilcoxon test; Figures 2F and 2I). Similar patterns of expression were observed for CCR7 (Figure S3). To link these findings with the labeling data, we compared the phenotypic characteristics of Ki67+CD57 and Ki67+CD57+ memory T cells with the phenotypic characteristics of CD57 and CD57+ memory T cells sampled from the healthy volunteers in cohort 2. In both coreceptor-defined lineages, CD57 memory T cells expressed CD28 and CCR7 at higher frequencies than CD57+ memory T cells, akin to the corresponding Ki67+ memory T cells (Figure S4). Of note, CD57+ memory CD4+ T cells mostly lacked CD27 but commonly expressed CD127 and PD-1, whereas CD57+ memory CD8+ T cells were generally more In each coreceptor-defined lineage, similar patterns of 2H la- beling and delabeling were observed among CD57 and CD57+ memory T cells, and equivalent (n = 3) or greater rates of 2H labeling (n = 5) were observed among CD57+ memory T cells compared with CD57 memory T cells (Figures 1D and 1E). Histories To refine our understanding of these datasets, we measured XpYp or 17p telomere lengths in the CD57 and CD57+ memory T cell pools (Figure 3A). Telomere lengths were distributed in a heterogeneous manner and overlapped considerably across CD57-defined subsets in the CD4+ and CD8+ lineages. In some volunteers, significant differences in mean telomere length were observed between the CD57 and CD57+ memory T cell populations, most commonly in the CD4+ lineage, but no consis- tent directional change was apparent between CD57-defined subsets in either the CD4+ or the CD8+ lineage (Figures 3B and 3C). However, pooling the XpYp data from labeled volunteers re- vealed that telomere lengths were maintained to a slightly greater extent in the CD57 memory CD4+ T cell population compared with the CD57+ memory CD4+ T cell population (Fig- ure 3D), and pooling the 17p data from volunteers in cohort 3 yielded a similar result with borderline significance (p = 0.037, Mann-Whitney U test; data not shown). Telomerase activity was generally low, as expected given the infrequent expression of Ki67, but marginally higher levels were detected among CD57 memory T cells compared with CD57+ memory T cells in both coreceptor-defined lineages. These data were reported previously for reference in another labeling study of the volun- teers in cohort 2 (Ahmed et al., 2016). Fits were restricted to the volunteers for whom labeling data and telomere length data were available (n = 5). The general model (with p2 free) fitted the data well for CD57 and CD57+ memory T cells in the CD4+ and CD8+ lineages (Figure 4B; Table 1). Impor- tantly, the proliferation rate estimates for the CD57+ subsets were positive, with 95% confidence intervals that did not overlap zero (i.e., p2 > 0). This conclusion was robust to different rates of telo- mere shortening per cell division and changes in the parameter K (Figure S6). Model performance was considerably worse if prolif- eration was disallowed in the CD57+ memory T cell populations (i.e., p2 = 0) (Figures 4B and S7). Indeed, the median p value in a comparison of the models was 5 3 1020 (F test), which provided strong evidence to reject the null hypothesis of the simpler model, namely that CD57+ memory T cells were unable to proliferate (i.e., p2 = 0). Histories Moreover, the median small-sample-corrected Akaike in- formation criterion (AICc) difference was 106, which indicated that the simpler model provided a substantially worse description of the data (i.e., fit after adjustment for model complexity). The best fits were therefore consistent with substantial proliferation in the CD57+ compartments, such that influx from the CD57 compartments typically contributed only 5% of all newly gener- ated CD57+ memory T cells (Table 1). CD57 and CD57+ Memory T Cells Self-Renew In Vivo To integrate these findings, we fitted mathematical models simul- taneously to the 2H enrichment data and the telomere length data, allowing CD57 memory T cells to become CD57+ memory T cells in the CD4+ and CD8+ lineages (Figure 4A). This approach was de- signed to capture both possible explanations for the accumulation of label in the corresponding CD57+ compartments, namely that CD57 and CD57+ Memory T Cells Exhibit Similar Rates of Deuterium Incorporation Importantly, the corresponding 2H label enrichments in body water followed an expected rise-and-fall profile (Figure S2), and in the context of age-related immune senescence, no intra- Cell Reports 33, 108501, December 15, 2020 3 Report A C E B D F G H I (legend on next page Report OPEN ACCESS A B B G B A D H D C C D H E F E I E (legend on next page) (legend on next page) 4 Cell Reports 33, 108501, December 15, 2020 Report ll OPEN ACCESS differentiated and rarely expressed CD27, CD127, or PD-1 (Fig- ures S4 and S5). Age had no apparent influence on these pheno- typic characteristics (data not shown). differentiated and rarely expressed CD27, CD127, or PD-1 (Fig- ures S4 and S5). Age had no apparent influence on these pheno- typic characteristics (data not shown). CD57 memory T cells proliferated and acquired expression of CD57 and/or that CD57+ memory T cells proliferated and retained expression of CD57. Proliferation rates were denoted by p1 and p2 for CD57 and CD57+ memory T cells, respectively, such that replicative senescence in the CD57+ subsets was represented by the constraint p2 = 0. Telomeres shorten by an average of 50 bp per cell division (De Boer and Noest, 1998). In some cases, this rate of erosion can be counteracted by the activity of telome- rase, a possibility that was included in the model assumptions via an additional parameter, termed K. CD57 and CD57+ Memory T Cells Have Similar Division Hi i DISCUSSION In this study, we used in vivo deuterium labeling and ex vivo an- alyses of telomere length, telomerase activity, and intracellular gure 2. Ki67+ Cells Are Readily Detectable in the CD57+ Memory T Cell Pool (A) Representative flow cytometric data from a labeled volunteer (DW01) showing cytosolic expression of Ki67 among memory CD4+ (top) or CD8+ T cells (bottom) gated as CD57 (blue) or CD57+ (red). (A) Representative flow cytometric data from a labeled volunteer (DW01) showing cytosolic expression of Ki67 among memory CD4+ (top) or CD8+ T cells (bottom) gated as CD57 (blue) or CD57+ (red). t cytosolic expression of Ki67 among memory CD4+ (top) or CD8+ T cells (bottom) gated as CD57 (blue triangles) or CD57+ (red ci d samples Wilcoxon test. (B) Percent cytosolic expression of Ki67 among memory CD4+ (top) or CD8+ T cells (bottom) gated as CD57 (blue triangles) or C 0.01. Paired samples Wilcoxon test. (C) Representative flow cytometric data from unlabeled volunteers (n = 2) showing cytosolic/nuclear expression of Ki67 among memory CD4+ T cells gated as CD57 (blue) or CD57+ (red). HC07 was seronegative for CMV. (C) Representative flow cytometric data from unlabeled volunteers (n = 2) showing cytosolic/nuclear expression of Ki67 among memory CD4+ T cells gated as CD57 (blue) or CD57+ (red). HC07 was seronegative for CMV. (D) Top: percent cytosolic/nuclear expression of Ki67 among memory CD4+ T cells gated as CD57 (blue triangles) or CD57+ (red circles). Bottom: percent expression of CD28 among the corresponding Ki67+CD57 (blue triangles) and Ki67+CD57+ memory CD4+ T cells (red circles). **p < 0.01. Paired samples Wilcoxon test. (D) Top: percent cytosolic/nuclear expression of Ki67 among memory CD4+ T cells gated as CD57 (blue triangles) or CD57+ (red circles). Bottom: percent expression of CD28 among the corresponding Ki67+CD57 (blue triangles) and Ki67+CD57+ memory CD4+ T cells (red circles). **p < 0.01. Paired samples Wilcoxon test. (E) Representative flow cytometric data from unlabeled volunteers (n = 2) showing cytosolic/nuclear expression of Ki67 among memory CD8+ T cells gated as CD57 (blue) or CD57+ (red). HC02 was seropositive for CMV, and HC08 was seronegative for CMV. (E) Representative flow cytometric data from unlabeled volunteers (n = 2) showing cytosolic/nuclear expression of Ki67 among memory CD8+ T cells gated as CD57 (blue) or CD57+ (red). HC02 was seropositive for CMV, and HC08 was seronegative for CMV. DISCUSSION entative flow cytometric data from unlabeled volunteers (n = 2) showing cytosolic/nuclear expression of Ki67 ue) or CD57+ (red). HC02 was seropositive for CMV, and HC08 was seronegative for CMV. ( ) ( ) p g (F) Top: percent cytosolic/nuclear expression of Ki67 among memory CD8+ T cells gated as CD57 (blue triangles) or CD57+ (red circles). Bottom: percent expression of CD28 among the corresponding Ki67+CD57 (blue triangles) and Ki67+CD57+ memory CD8+ T cells (red circles). *p < 0.05, **p < 0.01. Paired samples Wilcoxon test. (F) Top: percent cytosolic/nuclear expression of Ki67 among memory CD8+ T cells gated as CD57 (blue triangles) or CD57+ (red circles). Bottom: percent expression of CD28 among the corresponding Ki67+CD57 (blue triangles) and Ki67+CD57+ memory CD8+ T cells (red circles). *p < 0.05, **p < 0.01. Paired samples Wilcoxon test. p (G) Phenotypic characteristics of Ki67+CD57 and Ki67+CD57+ memory CD4+ (top) or CD8+ T cells (bottom) shown overlaid on density clouds representing the corresponding total CD4+ (top) or CD8+ T cell populations (bottom). Related to (A). (G) Phenotypic characteristics of Ki67+CD57 and Ki67+CD57+ memory CD4+ (top) or CD8+ T cells (bottom) shown overlaid on density clouds representing the corresponding total CD4+ (top) or CD8+ T cell populations (bottom). Related to (A). of Ki67+CD57 and Ki67+CD57+ memory CD4+ T cells shown overlaid on density clouds representing the corresponding total d to (C). Key as in (G). ) Phenotypic characteristics of Ki67+CD57 and Ki67+CD57+ memory CD4+ T cells shown overlaid on density clouds represe D4+ T cell populations. Related to (C). Key as in (G). CD4+ T cell populations. Related to (C). Key as in (G). p p ( ) y ( ) (I) Phenotypic characteristics of Ki67+CD57 and Ki67+CD57+ memory CD8+ T cells shown overlaid on density clouds representing the corresponding total CD8+ T cell populations. Related to (E). Key as in (G). (I) Phenotypic characteristics of Ki67+CD57 and Ki67+CD57+ memory CD8+ T cells shown overlaid on density clouds representing the corresponding total CD8+ T cell populations. Related to (E). Key as in (G). Cell Reports 33, 108501, December 15, 2020 5 Report ll OPEN ACCESS A C D B ure 3. CD57 and CD57+ Memory T Cells Have Similar Division Histories Representative single telomere length analysis (STELA) data showing XpYp telomere lengths among CD57 and CD57+ memory CD4+ or CD8+ T cells pled from a labeled volunteer (DW02). DISCUSSION XpYp telomere lengths among CD57 and CD57+ memory CD4+ or CD8+ T cells sampled from labeled volunteers (cohort 2). *p < 0.05, **p < 0.01, ***p < 0.001 nn-Whitney U test. 7p telomere lengths among CD57 and CD57+ memory CD4+ or CD8+ T cells sampled from unlabeled volunteers (cohort 3). *p < 0.05, **p < 0.01, ***p < 0.001 nn-Whitney U test. Pooled XpYp telomere length data for the volunteers shown in (B). Red lines show means with 95% confidence intervals. Mean values are specified above h column. Significance was assessed using the Mann-Whitney U test. p B A A B A D C D C Figure 3. CD57 and CD57+ Memory T Cells Have Similar Division Histories (A) Representative single telomere length analysis (STELA) data showing XpYp telomere lengths among CD57 and CD57+ memory CD4+ or CD8+ T cells sampled from a labeled volunteer (DW02). (B) XpYp telomere lengths among CD57 and CD57+ memory CD4+ or CD8+ T cells sampled from labeled volunteers (cohort 2). *p < 0.05, **p < 0.01, ***p < 0.001. Mann-Whitney U test. (C) 17p telomere lengths among CD57 and CD57+ memory CD4+ or CD8+ T cells sampled from unlabeled volunteers (cohort 3). *p < 0.05, **p < 0.01, ***p < 0.001. Mann-Whitney U test. (D) Pooled XpYp telomere length data for the volunteers shown in (B). Red lines show means with 95% confidence intervals. Mean values are specified above each column. Significance was assessed using the Mann-Whitney U test. Figure 3. CD57 and CD57+ Memory T Cells Have Similar Division Histories (A) Representative single telomere length analysis (STELA) data showing XpYp telomere lengths among CD57 and CD57+ memory CD4+ or CD8+ T cells sampled from a labeled volunteer (DW02). (B) XpYp telomere lengths among CD57 and CD57+ memory CD4+ or CD8+ T cells sampled from labeled volunteers (cohort 2). *p < 0.05, **p < 0.01, ***p < 0.001. Mann-Whitney U test. (C) 17p telomere lengths among CD57 and CD57+ memory CD4+ or CD8+ T cells sampled from unlabeled volunteers (cohort 3). *p < 0.05, **p < 0.01, ***p < 0.001. Mann-Whitney U test. (D) Pooled XpYp telomere length data for the volunteers shown in (B). Red lines show means with 95% confidence intervals. Mean values are specified above each column. Significance was assessed using the Mann-Whitney U test. DISCUSSION CD57+ memory T cells in the CD4+ and CD8+ lineages, consis- tent with a relatively small biological effect, and in line with recent observations (Fali et al., 2018), telomere lengths were maintained to a slightly greater extent among CD57 memory CD4+ T cells compared with CD57+ memory CD4+ T cells. In contrast, telo- mere lengths were distributed around similar means in the CD57 and CD57+ memory CD8+ T cell populations. Mathemat- ical modeling of the experimental data further suggested that self-renewal via intracompartmental proliferation rather than expression of the cell-cycle marker Ki67 to investigate the para- digm that replicatively senescent memory T cells can be identi- fied via the surrogate marker CD57. We detected similar rates of proliferation among CD57 and CD57+ memory T cells in both coreceptor-defined lineages. These results were supported by flow cytometric analyses, which revealed the presence of actively dividing cells in the corresponding CD57+ memory T cell populations. Marginally higher levels of telomerase activity were detected among CD57 memory T cells compared with 6 Cell Reports 33, 108501, December 15, 2020 6 ll OPEN ACCESS A B 57 and CD57+ Memory T Cells Self-Renew In Vivo representation of the mathematical model. the measured data (dots) for CD57 and CD57+ memory CD4+ (left) or CD8+ T cells (right) with p2 constrained to zero (dashed lines) Cell Reports 33 108501 Decem A A B B C + C S Figure 4. CD57 and CD57+ Memory T Cells Self-Renew In Vivo (A) Schematic representation of the mathematical model. g y (A) Schematic representation of the mathematical model. (B) Model fits to the measured data (dots) for CD57 and CD57+ memory CD4+ (left) or CD8+ T cells (right) with p2 constrained to zero (dashed lines) or free (solid lines). (B) Model fits to the measured data (dots) for CD57 and CD57+ memory CD4+ (left) or CD8+ T cells (right) with p2 constrained to zero (dashed lines) or free (solid lines). Cell Reports 33, 108501, December 15, 2020 7 Report Report ll OPEN ACCESS Table 1. DISCUSSION Parameter Estimates from Model Fits to the Experimental Data ID p1 (% per day) SE (% per day) z1 (% per day) SE (% per day) p2 (% per day) SE (% per day) z2 (% per day) SE (% per day) mR (% per day) SE (% per day) Self- renewal (%) CD4+ T Cells DW01 0.33 0.04 0.0088 0.27 0.59 0.08 1.24 0.37 0.02 0.01 97 DW02 0.65 0.06 1.89 0.31 2.08 0.23 3.77 0.58 0.17 0.03 93 DW04 0.53 N/D 1.43 N/D 0.53 N/D 1.65 N/D 0.00 N/D 100 DW10 0.58 0.05 1.80 0.28 0.49 0.05 0.92 0.22 0.00 0.00 99 DW11 0.44 0.06 1.24 0.33 1.64 0.02 5.24 0.66 0.45 0.02 79 Median 0.53 1.43 0.59 1.65 0.02 97 CD8+ T Cells DW01 0.26 0.02 0.73 0.13 0.40 0.03 0.70 0.13 0.02 0.00 96 DW02 0.22 0.02 0.86 0.22 0.42 0.04 0.45 0.19 0.04 0.01 92 DW04 0.37 N/D 0.91 N/D 0.37 N/D 0.62 N/D 0.00 N/D 100 DW10 0.55 0.17 3.60 1.53 0.34 0.11 0.63 0.56 0.02 0.02 95 DW11 0.07 0.01 0.24 0.34 0.32 0.03 0.81 0.04 0.07 0.01 83 Median 0.26 0.86 0.37 0.63 0.02 95 The best-fit estimates are shown. A limited number of data points were available from one volunteer (DW04). The asymptotic covariance matrix method was used to calculate standard errors (SEs). The percentage of new CD57+ T cells generated via intracompartmental proliferation (right column) was calculated as 100 3 p2/(p2 + mR). ID, identification number; N/D, not determined. The best-fit estimates are shown. A limited number of data points were available from one volunteer (DW04). The asymptotic covariance matrix method was used to calculate standard errors (SEs). The percentage of new CD57+ T cells generated via intracompartmental proliferation (right column) was calculated as 100 3 p2/(p2 + mR). ID, identification number; N/D, not determined. replenishment via phenotypic conversion was by far the most abundant source of newly generated CD57+ memory CD4+ and CD57+ memory CD8+ T cells. thought to indicate a functional dichotomy between CD57- defined subsets within the CD8+ TEMRA compartment. However, it does not necessarily follow that a similar dichotomy exists un- der homeostatic conditions, because terminally differentiated CD57+ memory CD8+ T cells may be protected from excessive stimulation in vivo by a lack of costimulatory receptors, such as CD27 and CD28. DISCUSSION CD57 was originally recognized as a differentiation antigen on the surface of NK cells (Abo and Balch, 1981) and subsequently associated with other lymphocyte subsets in germinal centers (Ritchie et al., 1983). In peripheral blood, CD57+ memory T cells accumulate throughout life, especially after infection with CMV (Gratama et al., 1989). These associations with age and persistent antigenic drive were mechanistically linked in a seminal in vitro study, which reported that replicatively senes- cent memory CD8+ T cells expressed CD57 (Brenchley et al., 2003). However, an earlier study had reached a different conclu- sion (Izquierdo et al., 1990), and later experiments showed that CD57+ memory CD8+ T cells were able to proliferate in vitro in the presence of certain growth factors, potentially mimicking the in vivo microenvironment (Chong et al., 2008). Similar find- ings were reported in another study, although markedly higher response frequencies on a per-cell basis were noted in the CD57 subset compared with the CD57+ subset (Le Priol et al., 2006). Nonetheless, the proportion of responding cells in the CD57+ subset was more than sufficient to maintain homeo- static turnover, at least according to a deuterium labeling study of bulk memory T cell populations (Zhang et al., 2013). In summary, we have shown that CD57+ memory T cells in the CD4+ and CD8+ lineages self-renew in vivo, enabling the long- term maintenance of functionally replete immunological mem- ory. It remains to be determined how this process is regulated in terms of antigenic drive versus homeostatic signals as a func- tion of differentiation status, but nonetheless, it is clear from the presented data that replicatively senescent memory T cells cannot be defined solely via surface expression of CD57. 8 Cell Reports 33, 108501, December 15, 2020 ACKNOWLEDGMENTS Brenchley, J.M., Karandikar, N.J., Betts, M.R., Ambrozak, D.R., Hill, B.J., Crotty, L.E., Casazza, J.P., Kuruppu, J., Migueles, S.A., Connors, M., et al. (2003). Expression of CD57 defines replicative senescence and antigen- induced apoptotic death of CD8+ T cells. Blood 101, 2711–2720. The authors extend their profound thanks to all study participants. This work was funded by Cancer Research UK (grant C17199/A18246), the Medical Research Council (grant G1001052), and the Wellcome Trust (grant 093053/ Z/10/Z). J.L.-B. was supported by the European Union Seventh Framework Programme (grant 317040, QuanTI). Pilot studies were funded in part by the National Institutes of Health (NIH) via grant RO1 AI43866 to M.K.H. and grants R37 AI40312 and U01 AI43641 to J.M.M., who also received a Burroughs Well- come Fund Clinical Scientist Award in Translational Research and was sup- ported by an NIH Director’s Pioneer Award, part of the NIH Roadmap for Med- ical Research, via grant DPI OD00329. Research conducted at the University of California San Francisco Clinical and Translational Science Institute under the guidance of J.M.M. was supported by the National Center for Research Resources, part of the NIH Roadmap for Medical Research, via grant UL1 RR024131-01. D.A.P. was supported by a Wellcome Trust Senior Investigator Award (100326/Z/12/Z). B.A. was supported by the European Union Seventh Framework Programme (grant 317040, QuanTI), Leukemia and Lymphoma Research (grant 15012), Medical Research Council (grants G1001052 and J007439), and Wellcome Trust via an Investigator Award (103865/Z/14/Z). Burnham, K.P., and Anderson, D.R. (2002). Model Selection and Multimodel Inference: A Practical Information-Theoretic Approach, Second Edition (Springer-Verlag). Busch, R., Neese, R.A., Awada, M., Hayes, G.M., and Hellerstein, M.K. (2007). Measurement of cell proliferation by heavy water labeling. Nat. Protoc. 2, 3045–3057. Capper, R., Britt-Compton, B., Tankimanova, M., Rowson, J., Letsolo, B., Man, S., Haughton, M., and Baird, D.M. (2007). The nature of telomere fusion and a definition of the critical telomere length in human cells. Genes Dev. 21, 2495–2508. Casazza, J.P., Betts, M.R., Price, D.A., Precopio, M.L., Ruff, L.E., Brenchley, J.M., Hill, B.J., Roederer, M., Douek, D.C., and Koup, R.A. (2006). Acquisition of direct antiviral effector functions by CMV-specific CD4+ T lymphocytes with cellular maturation. J. Exp. Med. 203, 2865–2877. Chattopadhyay, P.K., Betts, M.R., Price, D.A., Gostick, E., Horton, H., Roe- derer, M., and De Rosa, S.C. (2009). d QUANTIFICATION AND STATISTICAL ANALYSIS Ahmed, R., Roger, L., Costa Del Amo, P., Miners, K.L., Jones, R.E., Boelen, L., Fali, T., Elemans, M., Zhang, Y., Appay, V., et al. (2016). Human stem cell-like memory T cells are maintained in a state of dynamic flux. Cell Rep. 17, 2811– 2818. Ahmed, R., Roger, L., Costa Del Amo, P., Miners, K.L., Jones, R.E., Boelen, L., Fali, T., Elemans, M., Zhang, Y., Appay, V., et al. (2016). Human stem cell-like B General Statistics B Mathematical Modeling B Inclusion of Telomere Length Data in Model Fits memory T cells are maintained in a state of dynamic flux. Cell Rep. 17, 2811– 2818. B Mathematical Modeling Appay, V., van Lier, R.A., Sallusto, F., and Roederer, M. (2008). Phenotype and function of human T lymphocyte subsets: consensus and issues. Cytometry A 73, 975–983. B Estimation of Telomere Length Change B Fitting Procedure B Fitting Procedure Benito, J.M., Ortiz, M.C., Leo´ n, A., Sarabia, L.A., Ligos, J.M., Montoya, M., Garcia, M., Ruiz-Mateos, E., Palacios, R., Cabello, A., et al.; ECRIS integrated AUTHOR CONTRIBUTIONS M.K.H., J.M.M., D.A.P., D.C.M., and K.L. designed experiments; R.A., K.L.M., R.E.J., L.R., Y.Z., and K.L. performed experiments; C.B., M.K.H., J.M.M., D.M.B., D.A.P., D.C.M., and K.L. supervised experiments; R.A., K.L.M., R.E.J., L.R., D.M.B., D.C.M., and K.L. analyzed data; J.L.-B. and B.A. modeled data; D.A.P., D.C.M., B.A., and K.L. wrote the manuscript. All authors contrib- uted intellectually and approved the manuscript. Chong, L.K., Aicheler, R.J., Llewellyn-Lacey, S., Tomasec, P., Brennan, P., and Wang, E.C. (2008). Proliferation and interleukin 5 production by CD8hi CD57+ T cells. Eur. J. Immunol. 38, 995–1000. Collins, K. (2006). The biogenesis and regulation of telomerase holoenzymes. Nat. Rev. Mol. Cell Biol. 7, 484–494. Costa Del Amo, P., Lahoz-Beneytez, J., Boelen, L., Ahmed, R., Miners, K.L., Zhang, Y., Roger, L., Jones, R.E., Marraco, S.A.F., Speiser, D.E., et al. (2018). Human TSCM cell dynamics in vivo are compatible with long-lived immunological memory and stemness. PLoS Biol. 16, e2005523. ACKNOWLEDGMENTS The cytolytic enzymes granyzme A, gran- zyme B, and perforin: expression patterns, cell distribution, and their relation- ship to cell maturity and bright CD57 expression. J. Leukoc. Biol. 85, 88–97. SUPPLEMENTAL INFORMATION in the Spanish AIDS Research Network (2018). Class-modeling analysis re- veals T-cell homeostasis disturbances involved in loss of immune control in elite controllers. BMC Med. 16, 30. Supplemental Information can be found online at https://doi.org/10.1016/j. celrep.2020.108501. Bodnar, A.G., Kim, N.W., Effros, R.B., and Chiu, C.P. (1996). Mechanism of telomerase induction during T cell activation. Exp. Cell Res. 228, 58–64. The authors declare no competing interests. Day, C.L., Kaufmann, D.E., Kiepiela, P., Brown, J.A., Moodley, E.S., Reddy, S., Mackey, E.W., Miller, J.D., Leslie, A.J., DePierres, C., et al. (2006). PD-1 expression on HIV-specific T cells is associated with T-cell exhaustion and dis- ease progression. Nature 443, 350–354. Received: April 9, 2020 Revised: August 26, 2020 Accepted: November 18, 2020 Published: December 15, 2020 Published: December 15, 2020 De Boer, R.J., and Noest, A.J. (1998). T cell renewal rates, telomerase, and telomere length shortening. J. Immunol. 160, 5832–5837. STAR+METHODS Detailed methods are provided in the online version of this paper and include the following: d KEY RESOURCES TABLE d KEY RESOURCES TABLE d RESOURCE AVAILABILITY B Lead Contact B Materials Availability B Data and Code Availability d EXPERIMENTAL MODEL AND SUBJECT DETAILS d METHOD DETAILS B Measurement and Analysis of Deuterium Enrichment in T Cell DNA B Flow Cytometry and Cell Sorting B Single Chromosome Telomere Length Analysis B Measurement of Telomerase Activity TEMRA cells are somewhat resistant to apoptosis (Gupta and Gollapudi, 2007) and retain deuterium in the CD8+ lineage with an estimated half-life of approximately 25 years, assuming sim- ple exponential decay without phenotypic conversion (Ladell et al., 2008). In response to extreme stimulation with supraphy- siological concentrations of phytohemagglutinin and inter- leukin-2, CD8+ TEMRA cells that expressed CD57 were recently found to be more susceptible to cell death than CD8+ TEMRA cells that lacked CD57 (Verma et al., 2017). This observation was 8 Cell Reports 33, 108501, December 15, 2020 Report ll OPEN ACCESS Report subsets defined by CD57, CD27, and CD45 iso- forms. Eur. J. Immunol. 29, 2908–2915. Soetaert, K., and Petzoldt, T. (2010). Inverse modelling, sensitivity and Monte Carlo analysis in R using package FME. J. Stat. Softw. 33, 1–28. Takata, H., and Takiguchi, M. (2006). Three memory subsets of human CD8+ T cells differently expressing three cytolytic effector molecules. J. Immunol. 177, 4330–4340. Ladell, K., Hellerstein, M.K., Cesar, D., Busch, R., Boban, D., and McCune, J.M. (2008). Central memory CD8+ T cells appear to have a shorter lifespan and reduced abundance as a function of HIV disease progression. J. Immunol. 180, 7907–7918. Trautmann, L., Janbazian, L., Chomont, N., Said, E.A., Gimmig, S., Bessette, B., Boulassel, M.R., Delwart, E., Sepulveda, H., Balderas, R.S., et al. (2006). Upregulation of PD-1 expression on HIV-specific CD8+ T cells leads to revers- ible immune dysfunction. Nat. Med. 12, 1198–1202. Lahoz-Beneytez, J., Elemans, M., Zhang, Y., Ahmed, R., Salam, A., Block, M., Niederalt, C., Asquith, B., and Macallan, D. (2016). Human neutrophil kinetics: modeling of stable isotope labeling data supports short blood neutrophil half- lives. Blood 127, 3431–3438. van Leeuwen, E.M., Gamadia, L.E., Baars, P.A., Remmerswaal, E.B., ten Berge, I.J., and van Lier, R.A. (2002). Proliferation requirements of cytomega- lovirus-specific, effector-type human CD8+ T cells. J. Immunol. 169, 5838– 5843. Le Priol, Y., Puthier, D., Le´ cureuil, C., Combadie` re, C., Debre´ , P., Nguyen, C., and Combadie` re, B. (2006). High cytotoxic and specific migratory potencies of senescent CD8+ CD57+ cells in HIV-infected and uninfected individuals. J. Immunol. 177, 5145–5154. Verma, K., Ogonek, J., Varanasi, P.R., Luther, S., B€unting, I., Thomay, K., Beh- rens, Y.L., Mischak-Weissinger, E., and Hambach, L. (2017). Human CD8+ CD57 TEMRA cells: too young to be called ‘‘old’’. PLoS ONE 12, e0177405. McCune, J.M., Hanley, M.B., Cesar, D., Halvorsen, R., Hoh, R., Schmidt, D., Wieder, E., Deeks, S., Siler, S., Neese, R., and Hellerstein, M. (2000). Factors influencing T-cell turnover in HIV-1-seropositive patients. J. Clin. Invest. 105, R1–R8. Vrisekoop, N., den Braber, I., de Boer, A.B., Ruiter, A.F., Ackermans, M.T., van der Crabben, S.N., Schrijver, E.H., Spierenburg, G., Sauerwein, H.P., Hazen- berg, M.D., et al. (2008). Sparse production but preferential incorporation of recently produced naive T cells in the human peripheral pool. Proc. Natl. Acad. Sci. U. S. A. 105, 6115–6120. Miller, I., Min, M., Yang, C., Tian, C., Gookin, S., Carter, D., and Spencer, S.L. (2018). Report ll OPEN ACCESS Toxoplasma gondii serology and lymphocyte phenotypes in peripheral blood and cord blood. Scand. J. Infect. Dis. 21, 611–616. Patel, A.A., Zhang, Y., Fullerton, J.N., Boelen, L., Rongvaux, A., Maini, A.A., Bigley, V., Flavell, R.A., Gilroy, D.W., Asquith, B., et al. (2017). The fate and life- span of human monocyte subsets in steady state and systemic inflammation. J. Exp. Med. 214, 1913–1923. Gupta, S., and Gollapudi, S. (2007). Effector memory CD8+ T cells are resistant to apoptosis. Ann. N Y Acad. Sci. 1109, 145–150. Petrovas, C., Casazza, J.P., Brenchley, J.M., Price, D.A., Gostick, E., Adams, W.C., Precopio, M.L., Schacker, T., Roederer, M., Douek, D.C., and Koup, R.A. (2006). PD-1 is a regulator of virus-specific CD8+ T cell survival in HIV infection. J. Exp. Med. 203, 2281–2292. Hegedus, A., Nyamweya, S., Zhang, Y., Govind, S., Aspinall, R., Mashanova, A., Jansen, V.A., Whittle, H., Jaye, A., Flanagan, K.L., and Macallan, D.C. (2014). Protection versus pathology in aviremic and high viral load HIV-2 infection—the pivotal role of immune activation and T-cell kinetics. J. Infect. Dis. 210, 752–761. Petrovas, C., Chaon, B., Ambrozak, D.R., Price, D.A., Melenhorst, J.J., Hill, B.J., Geldmacher, C., Casazza, J.P., Chattopadhyay, P.K., Roederer, M., et al. (2009). Differential association of programmed death-1 and CD57 with ex vivo survival of CD8+ T cells in HIV infection. J. Immunol. 183, 1120–1132. Hellerstein, M., Hanley, M.B., Cesar, D., Siler, S., Papageorgopoulos, C., Wieder, E., Schmidt, D., Hoh, R., Neese, R., Macallan, D., et al. (1999). Directly measured kinetics of circulating T lymphocytes in normal and HIV-1-infected humans. Nat. Med. 5, 83–89. Previs, S.F., Hazey, J.W., Diraison, F., Beylot, M., David, F., and Brunengraber, H. (1996). Assay of the deuterium enrichment of water via acetylene. J. Mass Spectrom. 31, 639–642. Izquierdo, M., Balboa, M.A., Ferna´ ndez-Ran˜ ada, J.M., Figuera, A., Torres, A., Iriondo, A., and Lo´ pez-Botet, M. (1990). Relation between the increase of circulating CD3+ CD57+ lymphocytes and T cell dysfunction in recipients of bone marrow transplantation. Clin. Exp. Immunol. 82, 145–150. Ritchie, A.W., James, K., and Micklem, H.S. (1983). The distribution and possible significance of cells identified in human lymphoid tissue by the mono- clonal antibody HNK-1. Clin. Exp. Immunol. 51, 439–447. Kern, F., Khatamzas, E., Surel, I., Fro¨ mmel, C., Reinke, P., Waldrop, S.L., Picker, L.J., and Volk, H.D. (1999). Distribution of human CMV-specific mem- ory T cells among the CD8pos. REFERENCES Fali, T., Fabre-Mersseman, V., Yamamoto, T., Bayard, C., Papagno, L., Faste- nackels, S., Zoorab, R., Koup, R.A., Boddaert, J., Sauce, D., and Appay, V. (2018). Elderly human hematopoietic progenitor cells express cellular senes- cence markers and are more susceptible to pyroptosis. JCI Insight 3, e95319. Abo, T., and Balch, C.M. (1981). A differentiation antigen of human NK and K cells identified by a monoclonal antibody (HNK-1). J. Immunol. 127, 1024– 1029. Freeman, G.J., Wherry, E.J., Ahmed, R., and Sharpe, A.H. (2006). Reinvigorat- ing exhausted HIV-specific T cells via PD-1-PD-1 ligand blockade. J. Exp. Med. 203, 2223–2227. Addo, M.M., Draenert, R., Rathod, A., Verrill, C.L., Davis, B.T., Gandhi, R.T., Robbins, G.K., Basgoz, N.O., Stone, D.R., Cohen, D.E., et al. (2007). Fully differentiated HIV-1 specific CD8+ T effector cells are more frequently detect- able in controlled than in progressive HIV-1 infection. PLoS ONE 2, e321. Gerdes, J., Schwab, U., Lemke, H., and Stein, H. (1983). Production of a mouse monoclonal antibody reactive with a human nuclear antigen associated with cell proliferation. Int. J. Cancer 31, 13–20. Ahmed, R., Westera, L., Drylewicz, J., Elemans, M., Zhang, Y., Kelly, E., Reljic, R., Tesselaar, K., de Boer, R.J., Macallan, D.C., et al. (2015). Reconciling esti- mates of cell proliferation from stable isotope labeling experiments. PLoS Comput. Biol. 11, e1004355. Ahmed, R., Westera, L., Drylewicz, J., Elemans, M., Zhang, Y., Kelly, E., Reljic, R., Tesselaar, K., de Boer, R.J., Macallan, D.C., et al. (2015). Reconciling esti- mates of cell proliferation from stable isotope labeling experiments. PLoS Comput. Biol. 11, e1004355. Ahmed, R., Westera, L., Drylewicz, J., Elemans, M., Zhang, Y., Kelly, E., Reljic, R., Tesselaar, K., de Boer, R.J., Macallan, D.C., et al. (2015). Reconciling esti- mates of cell proliferation from stable isotope labeling experiments. PLoS Comput. Biol. 11, e1004355. Gratama, J.W., Fridell, E., Lenkei, R., Oosterveer, M.A., Ljungstro¨ m, I., Tanke, H.J., and Linde, A. (1989). Correlation between cytomegalovirus and Cell Reports 33, 108501, December 15, 2020 9 Report 10 Cell Reports 33, 108501, December 15, 2020 Report Ki67 is a graded rather than a binary marker of proliferation versus quiescence. Cell Rep. 24, 1105–1112.e5. Vrisekoop, N., Drylewicz, J., Van Gent, R., Mugwagwa, T., Van Lelyveld, S.F., Veel, E., Otto, S.A., Ackermans, M.T., Vermeulen, J.N., Huidekoper, H.H., et al. (2015). Quantification of naive and memory T-cell turnover during HIV-1 infec- tion. AIDS 29, 2071–2080. Neese, R.A., Siler, S.Q., Cesar, D., Antelo, F., Lee, D., Misell, L., Patel, K., Teh- rani, S., Shah, P., and Hellerstein, M.K. (2001). Advances in the stable isotope- mass spectrometric measurement of DNA synthesis and cell proliferation. Anal. Biochem. 298, 189–195. Wege, H., Chui, M.S., Le, H.T., Tran, J.M., and Zern, M.A. (2003). SYBR Green real-time telomeric repeat amplification protocol for the rapid quantification of telomerase activity. Nucleic Acids Res. 31, e3. Nociari, M.M., Telford, W., and Russo, C. (1999). Postthymic development of CD28CD8+ T cell subset: age-associated expansion and shift from memory to naive phenotype. J. Immunol. 162, 3327–3335. Westera, L., Zhang, Y., Tesselaar, K., Borghans, J.A., and Macallan, D.C. (2013). Quantitating lymphocyte homeostasis in vivo in humans using stable isotope tracers. Methods Mol. Biol. 979, 107–131. Northfield, J.W., Loo, C.P., Barbour, J.D., Spotts, G., Hecht, F.M., Klenerman, P., Nixon, D.F., and Michae¨ lsson, J. (2007). Human immunodeficiency virus type 1 (HIV-1)-specific CD8+ TEMRA cells in early infection are linked to control of HIV-1 viremia and predict the subsequent viral load set point. J. Virol. 81, 5759–5765. Zhang, Y., de Lara, C., Worth, A., Hegedus, A., Laamanen, K., Beverley, P., and Macallan, D. (2013). Accelerated in vivo proliferation of memory pheno- type CD4+ T-cells in human HIV-1 infection irrespective of viral chemokine co-receptor tropism. PLoS Pathog. 9, e1003310. Report 10 Cell Reports 33, 108501, December 15, 2020 Report ll OPEN ACCESS ll OPEN ACCESS REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Anti-CD3–APC-H7 (clone SK7) BD Biosciences Cat#641415; RRID:AB_2870309 Anti-CD4–PE-Cy5.5 (clone S3.5) Thermo Fisher Scientific Cat#MHCD0418; RRID:AB_10376013 Anti-CD8–BV711 (clone RPA-T8) BioLegend Cat#301044; RRID:AB_2562906 Anti-CD14–V500 (clone M5E2) BD Biosciences Cat#561391; RRID:AB_10611856 Anti-CD19–V500 (clone HIB19) BD Biosciences Cat#561121; RRID:AB_10562391 Anti-CD27–QD605 (clone CLB-27/1) Thermo Fisher Scientific Cat#Q10065; RRID:AB_2556450 Anti-CD28–APC (clone CD28.2) BD Biosciences Cat#559770; RRID:AB_398666 Anti-CD28–BV421 (clone CD28.2) BioLegend Cat#302930; RRID:AB_2561910 Anti-CD45RA–ECD (clone 2H4LDH11LDB9) Beckman Coulter Cat#M2711U; RRID:AB_10640553 Anti-CD45RA–PE (clone HI100) BD Biosciences Cat#555489; RRID:AB_395880 Anti-CD45RO–ECD (clone UCHL1) Beckman Coulter Cat#IM2712U; RRID:AB_10639537 Anti-CD57–FITC (clone NK-1) BD Biosciences Cat#555619; RRID:AB_395986 Anti-CD57–PE-Cy7 (clone NK-1) BioLegend Cat#359624; RRID:AB_2632689 Anti-CD127–BV421 (clone A019D5) BioLegend Cat#351310; RRID:AB_10960140 Anti-CCR7–BV421 (clone G043H7) BioLegend Cat#353208; RRID:AB_11203894 Anti-CCR7–FITC (clone 150503) BD Biosciences Cat#561271; RRID:AB_10561679 Anti-CCR7–PE-Cy7 (clone 3D12) BD Biosciences Cat#557648; RRID:AB_396765 Anti-CXCR3–BV421 (clone G025H7) BioLegend Cat#353716; RRID:AB_2561448 Anti-Ki67–AF647 (clone B56) BD Biosciences Cat#558615; RRID:AB_647130 Anti-Ki67–FITC (clone B56) BD Biosciences Cat#556026; RRID:AB_396302 Anti-PD-1–BV421 (clone EH12.2H7) BioLegend Cat#329920; RRID:AB_10960742 Biological Samples Peripheral blood from adults infected with HIV-1 San Francisco General Hospital, San Francisco, CA, USA N/A Peripheral blood from healthy adult volunteers St George’s Hospital, London, UK N/A Peripheral blood from healthy adult volunteers Cardiff University School of Medicine, Cardiff, UK N/A Chemicals, Peptides, and Recombinant Proteins Heavy water (2H2O) Cambridge Isotope Laboratories Cat#DLM-4TPB-PK Pentafluorobenzyl hydroxylamine Sigma-Aldrich Cat#194484 Sodium dodecyl sulfate Thermo Fisher Scientific Cat#10593355 Tris(hydroxymethyl) methylamine Thermo Fisher Scientific Cat#77-86-1 Ethylenediaminetetraacetic acid Sigma-Aldrich Cat#E6511-100G Sodium hydroxide Thermo Fisher Scientific Cat#J/7620/15 Sodium phosphate dibasic Sigma-Aldrich Cat#7558-79-4 Hydrochloric acid Thermo Fisher Scientific Cat#7647-01-0 Critical Commercial Assays LIVE/DEAD Fixable Aqua Dead Cell Stain Kit Thermo Fisher Scientific Cat#L34966 Cytofix/Cytoperm Kit BD Biosciences Cat#554715 Foxp3 Transcription Factor Staining Buffer Kit Thermo Fisher Scientific Cat#00-5521-00 QIAmp DNA Mini Kit QIAGEN Cat#51304 QIAmp DNA Micro Kit QIAGEN Cat#56304 (Continued on next page) REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Anti-CD3–APC-H7 (clone SK7) BD Biosciences Cat#641415; RRID:AB_2870309 Anti-CD4–PE-Cy5.5 (clone S3.5) Thermo Fisher Scientific Cat#MHCD0418; RRID:AB_10376013 Anti-CD8–BV711 (clone RPA-T8) BioLegend Cat#301044; RRID:AB_2562906 Anti-CD14–V500 (clone M5E2) BD Biosciences Cat#561391; RRID:AB_10611856 Anti-CD19–V500 (clone HIB19) BD Biosciences Cat#561121; RRID:AB_10562391 Anti-CD27–QD605 (clone CLB-27/1) Thermo Fisher Scientific Cat#Q10065; RRID:AB_2556450 Anti-CD28–APC (clone CD28.2) BD Biosciences Cat#559770; RRID:AB_398666 Anti-CD28–BV421 (clone CD28.2) BioLegend Cat#302930; RRID:AB_2561910 Anti-CD45RA–ECD (clone 2H4LDH11LDB9) Beckman Coulter Cat#M2711U; RRID:AB_10640553 Anti-CD45RA–PE (clone HI100) BD Biosciences Cat#555489; RRID:AB_395880 Anti-CD45RO–ECD (clone UCHL1) Beckman Coulter Cat#IM2712U; RRID:AB_10639537 Anti-CD57–FITC (clone NK-1) BD Biosciences Cat#555619; RRID:AB_395986 Anti-CD57–PE-Cy7 (clone NK-1) BioLegend Cat#359624; RRID:AB_2632689 Anti-CD127–BV421 (clone A019D5) BioLegend Cat#351310; RRID:AB_10960140 Anti-CCR7–BV421 (clone G043H7) BioLegend Cat#353208; RRID:AB_11203894 Anti-CCR7–FITC (clone 150503) BD Biosciences Cat#561271; RRID:AB_10561679 Anti-CCR7–PE-Cy7 (clone 3D12) BD Biosciences Cat#557648; RRID:AB_396765 Anti-CXCR3–BV421 (clone G025H7) BioLegend Cat#353716; RRID:AB_2561448 Anti-Ki67–AF647 (clone B56) BD Biosciences Cat#558615; RRID:AB_647130 Anti-Ki67–FITC (clone B56) BD Biosciences Cat#556026; RRID:AB_396302 Anti-PD-1–BV421 (clone EH12.2H7) BioLegend Cat#329920; RRID:AB_10960742 Cell Reports 33, 108501, December 15, 2020 e1 Continued REAGENT or RESOURCE SOURCE IDENTIFIER Oligonucleotides XpYpE2: TTGTCTCAGGGTCCTAGTG Eurofins Genomics Custom 17pserev1: GAATCCACGGATTGCTTTGTGTAC Eurofins Genomics Custom Telorette2: TGCTCCGTGCATCTGGCATCTAACCCT Eurofins Genomics Custom Teltail: TGCTCCGTGCATCTGGCATC Eurofins Genomics Custom Software and Algorithms DiVa version 8 BD Biosciences https://www.bdbiosciences.com/en-us FlowJo software version 9.9.4 FlowJo LLC https://www.flowjo.com Phoretix 1D Quantifier Nonlinear Dynamics http://www.nonlinear.com/about/totallab Prism version 8 GraphPad https://www.graphpad.com Other DreamTaq polymerase Thermo Fisher Scientific Cat#EP0702 Pwo polymerase Sigma-Aldrich Cat#11644955001 dNTPs Promega Cat#U1511 a-33P dCTP PerkinElmer Cat#BLU013H100UC Megaprime VWR Cat#RPN1607 Hybond-XL VWR Cat#RPN15205 Agarose MP Sigma-Aldrich Cat#11388983001 1 kb ladder Agilent Cat#201115 2.5 kb ladder Bio-Rad Cat#1708205 FACSVantage SE BD Biosciences https://www.bdbiosciences.com/en-us FACSAria BD Biosciences https://www.bdbiosciences.com/en-us Special Order Research Product FACSAria II BD Biosciences https://www.bdbiosciences.com/en-us GC/MS (5873/6980) Agilent https://www.agilent.com DB-17 column Agilent https://www.agilent.com Tetrad2 Thermal Cycler Bio-Rad https://www.bio-rad.com Typhoon FLA 9500 Phosphorimager GE Healthcare https://www.cytivalifesciences.com/ Report ll OPEN ACCESS ll OPEN ACCESS ll OPEN ACCESS Data and Code Availability y reported in this study are available on request from the Lead Contact, Kristin Ladell (ladellk@gmail.com). The datasets reported in this study are available on request from the Lead Contact, Kristin Ladell (ladellk@gmail.com). The datasets reported in this study are available on request from the Lead Contact, Kristin Lad RESOURCE AVAILABILITY Lead Contact Further information and requests for reagents and resources should be directed to and will be fulfilled by the Lead Contact, Kristin Ladell (ladellk@gmail.com). Lead Contact Further information and requests for reagents and resources should be directed to and will be fulfilled by the Lead Contact, Kristin Ladell (ladellk@gmail.com). Lead Contact Further information and requests for reagents and resources should be directed to and will be fulfilled by the Lead Contact, Kristin Ladell (ladellk@gmail.com). Materials Availability This study did not generate new unique reagents. Materials Availability This study did not generate new unique reagents. General Statistics Unmatched groups were compared using the Mann-Whitney U test, and matched groups were compared using the paired samples Wilcoxon test. Significance was assigned at p < 0.05. Measurement of Telomerase Activity Flow-sorted T cells were lyzed and assayed in two steps using a modified SYBR Green real-time quantitative telomeric repeat ampli- fication protocol (Wege et al., 2003). Standard curves were obtained from serial dilutions of a 293T cell extract with known telomerase activity. Experimental telomerase activity was calculated with reference to 293T cells and expressed as relative telomerase activity (Ct293T/Ctsample). EXPERIMENTAL MODEL AND SUBJECT DETAILS Three groups of human volunteers participated in this work. Cohort 1: volunteers with chronic HIV-1 infection (aged 36–53 years) were recruited for preliminary in vivo labeling studies (n = 4 males; Table S1). All were antiretroviral drug-free and sero- positive for CMV. Cohort 2: healthy volunteers (aged 29–83 years) were recruited for more extensive in vivo labeling studies (n = 3 females; n = 5 males; Table S1). All were seronegative for hepatitis C virus and HIV-1 and seropositive for CMV. Cohort 3: additional healthy volunteers (aged 28–58 years) were recruited for phenotypic studies and measurements of telomere length and telomerase activity (n = 7 females; n = 7 males). Similar experiments were performed using venous blood samples donated by 5 of the 8 volunteers in cohort 2. All studies were conducted in accordance with the principles of the Declaration of Helsinki. Ethical approval was granted by the University of California Committee on Human Research (cohort 1), the London- e2 Cell Reports 33, 108501, December 15, 2020 R t Report ll OPEN ACCESS ll OPEN ACCESS Chelsea Research Ethics Committee (cohort 2), and the Cardiff University School of Medicine Research Ethics Committee (cohort 3). METHOD DETAILS Measurement and Analysis of Deuterium Enrichment in T Cell DNA T cell proliferation in vivo was measured using deuterium (2H) labeling as described previously (Busch et al., 2007; Hellerstein et al., 1999; Ladell et al., 2008; McCune et al., 2000; Neese et al., 2001; Westera et al., 2013). Briefly, volunteers received heavy water (2H2O) orally for 7 weeks (Figure 1A), and deuterium incorporation into the DNA of flow-sorted T cells was quantified via gas chromatog- raphy/mass spectrometry (Agilent 5873/6980) (Ladell et al., 2008). DNA was released by boiling and hydrolyzed according to standard protocols, and deoxyribonucleosides were derivatized using pentafluorobenzyl hydroxylamine (Sigma-Aldrich). Gas chro- matography/mass spectrometry was performed in negative chemical ionization mode using a DB-17 column (Agilent). The M+1/M+0 isotopomer ratio was monitored at mass-to-charge (m/z) 436/435. To normalize for body water enrichment, weekly saliva samples were analyzed for 2H2O content via calcium carbide-induced acetylene generation, monitoring at m/z 27/26 (Previs et al., 1996). Single Chromosome Telomere Length Analysis DNA was extracted from 3,000 flow-sorted T cells using a QIAmp DNA Micro Kit (QIAGEN). Single telomere length analysis (STELA) was carried out at the XpYp or the 17p telomere as described previously (Capper et al., 2007). Briefly, 0.75 mL of the Telorette-2 linker (10 mM) was added to genomic DNA eluted in 35 mL of Tris (10 mM). Multiple PCRs were then performed for each test DNA. Each reaction was set up in a final volume of 10 mL containing 250 pg of DNA and the telomere-adjacent and Teltail primers at a final con- centration of 0.5 mM in 75 mM Tris-HCl pH 8.8, 20 mM (NH4)2SO4, 0.01% Tween-20, and 1.5 mM MgCl2, with 0.5 U of a 10:1 mixture of Taq (Thermo Fisher Scientific) and Pwo polymerase (Sigma-Aldrich). The reactions were processed in a Tetrad2 Thermal Cycler (Bio-Rad). DNA fragments were resolved via 0.5% Tris-acetate-EDTA agarose gel electrophoresis and identified via Southern hybrid- ization with a random-primed a-33P-labeled (PerkinElmer) TTAGGG repeat probe, together with probes specific for molecular weight markers at 1 kb (Agilent) and 2.5 kb (Bio-Rad). Hybridized fragments were detected using a Typhoon FLA 9500 Phosphorimager (GE Healthcare). The molecular weights of the DNA fragments were calculated using Phoretix 1D Quantifier (Nonlinear Dynamics). Flow Cytometry and Cell Sorting y y g T cell subsets of interest were flow-sorted from freshly isolated peripheral blood mononuclear cells (PBMCs) at >98% purity using a FACSVantage SE, a FACSAria, or a Special Order Research Product FACSAria II (all from BD Biosciences). Cells were stained with combinations of the following reagents: (1) anti-CD3–APC-H7 (clone SK7), anti-CD14–V500 (clone M5E2), anti-CD19–V500 (clone HIB19), anti-CD28–APC (clone CD28.2), anti-CD45RA–PE (clone HI100), anti-CD57–FITC (clone NK-1), anti-CCR7–FITC (clone 150503), and anti-CCR7–PE-Cy7 (clone 3D12) from BD Biosciences; (2) anti-CD4–PE-Cy5.5 (clone S3.5), anti-CD27–QD605 (clone CLB-27/1), and LIVE/DEAD Fixable Aqua from Thermo Fisher Scientific; (3) anti-CD8–BV711 (clone RPA-T8), anti-CD28–BV421 (clone CD28.2), anti-CD57–PE-Cy7 (clone NK-1), anti-CD127–BV421 (clone A019D5), anti-CCR7–BV421 (clone G043H7), anti- CXCR3–BV421 (clone G025H7), and anti-PD-1–BV421 (clone EH12.2H7) from BioLegend; and (4) anti-CD45RA–ECD (clone 2H4LDH11LDB9) and anti-CD45RO–ECD (clone UCHL1) from Beckman Coulter. Viable CD57 and CD57+ memory T cells were identified in the CD4+ and/or CD8+ lineages after exclusion of CD27brightCD45RO (Figure 1C) or CD45RA+CCR7+ events (Figure S1). Cytosolic expression of Ki67 was evaluated using anti-Ki67–AF647 (clone B56; BD Biosciences) in conjunction with a Cytofix/Cyto- perm Kit (BD Biosciences), and cytosolic/intranuclear expression of Ki67 was evaluated using anti-Ki67–FITC (clone B56; BD Bio- sciences) in conjunction with a Foxp3 Transcription Factor Staining Buffer Kit (Thermo Fisher Scientific). Data were analyzed with FlowJo software version 9.9.4 (FlowJo LLC). Report The fraction of label thus became: dL1 dt = p1bwUt  z 1L1 dL2 dt = ðp2 + mRÞbwUt  z 2L2 where p1 and p2 are as above, z1* and z2* are the rates of loss of labeled CD57 and CD57+ memory T cells, respectively, L1 and L2 are the fractions of labeled deoxyadenosine among CD57 and CD57+ memory T cells, respectively, R is the ratio of CD57 to CD57+ memory T cells (x1/x2), and bw is the amplification factor estimated from label acquisition among granulocytes, assuming 100% turn- over in 7 weeks. Data were available from 4 volunteers and gave a population average value for bw of 3.5, consistent with previous studies (Ahmed et al., 2015; Lahoz-Beneytez et al., 2016). The value of bw was therefore fixed at 3.5. Finally, U(t) is an empirical func- tion used to describe the availability of label in body water: where p1 and p2 are as above, z1* and z2* are the rates of loss of labeled CD57 and CD57+ memory T cells, respectively, L1 and L2 are the fractions of labeled deoxyadenosine among CD57 and CD57+ memory T cells, respectively, R is the ratio of CD57 to CD57+ memory T cells (x1/x2), and bw is the amplification factor estimated from label acquisition among granulocytes, assuming 100% turn- over in 7 weeks. Data were available from 4 volunteers and gave a population average value for bw of 3.5, consistent with previous studies (Ahmed et al., 2015; Lahoz-Beneytez et al., 2016). The value of bw was therefore fixed at 3.5. Inclusion of Telomere Length Data in Model Fits The impact of cell division on telomere length was modeled as described previously (De Boer and Noest, 1998). Telomere length data were available from 5 of the 8 volunteers in cohort 2. The model was fitted simultaneously to the labeling data and the telomere length data using the free parameters p1 and p2 to describe the rates of proliferation of CD57 and CD57+ memory T cells, respectively, z1* and z2* to describe the rates of disappearance of labeled CD57 and CD57+ memory T cells, respectively, and mR, the rate of con- version from CD57 to CD57+ memory T cells (m) multiplied by the ratio of the frequency of CD57 memory T cells to the frequency of CD57+ memory T cells (R). Report Finally, U(t) is an empirical func- tion used to describe the availability of label in body water: UðtÞ = f  1  edt + bedt during labeling t % t UðtÞ = f  1  edt + bedt during labeling t % t UðtÞ = f  1  edt + bedt during labeling t % t UðtÞ = f  1  edt + bedt during labeling t % t UðtÞ = f  1  edt + bedt during labeling t % t as described previously (Vrisekoop et al., 2008), where U(t) represents the fraction of labeled precursor in body water at time t (in days), f is the fraction of labeled precursor in ingested water, t is the length of the labeling period, d is the turnover rate of body water per day, and b is the plasma enrichment attained at the end of day 0. Parameters were estimated by fitting the above functions to the deuterium labeling data measured in saliva. The resulting fits of U(t) to saliva measurements are shown in Figure S2. Report ll OPEN ACCESS possibility that label acquisition in the CD57+ compartment was a consequence of proliferation-linked differentiation in the CD57 compartment. Accordingly, CD57 and CD57+ memory T cells were allowed to proliferate and die or exit the circulation, and CD57 memory T cells were allowed to gain expression of CD57. The phenotypic conversion of CD57 memory T cells into CD57+ memory T cells was considered over n rounds of division, including the possibility that n = 0. In the applied model, CD57 memory T cells (x1) became CD57+ memory T cells (x2) at a rate m: possibility that label acquisition in the CD57+ compartment was a consequence of proliferation-linked differentiation in the CD57 compartment. Accordingly, CD57 and CD57+ memory T cells were allowed to proliferate and die or exit the circulation, and CD57 memory T cells were allowed to gain expression of CD57. The phenotypic conversion of CD57 memory T cells into CD57+ memory T cells was considered over n rounds of division, including the possibility that n = 0. In the applied model, CD57 memory T cells (x1) became CD57+ memory T cells (x2) at a rate m: dx1 dt = p1x1  z1x1 dx2 dt = p2x2  z2x2 + mx1 where p1 and p2 are the rates of proliferation of CD57 and CD57+ memory T cells, respectively, and z1 and z2 are the rates of disap- pearance of CD57 and CD57+ memory T cells, respectively. The possibility that surface expression of CD57 could be acquired dur- ing clonal expansion was accommodated in the permitted values for m (bounds during fitting [0,40]). where p1 and p2 are the rates of proliferation of CD57 and CD57+ memory T cells, respectively, and z1 and z2 are the rates of disap- pearance of CD57 and CD57+ memory T cells, respectively. The possibility that surface expression of CD57 could be acquired dur- ing clonal expansion was accommodated in the permitted values for m (bounds during fitting [0,40]). To minimize the number of free parameters, label enrichment among CD57+ memory T cells was assumed to originate either from dividing CD57 memory T cells that differentiated into CD57+ memory T cells or from dividing CD57+ memory T cells. A model in which the acquisition of CD57 was not coincident with clonal expansion resulted in a substantially worse fit to the data and was not pursued further. e4 Cell Reports 33, 108501, December 15, 2020 Mathematical Modeling Mathematical Modeling Mechanistic ordinary differential equation-based models were developed to assess the dynamics of CD57 and CD57+ memory T cells (Costa Del Amo et al., 2018; Patel et al., 2017). These subsets were modeled as dependent populations to investigate the g Mechanistic ordinary differential equation-based models were developed to assess the dynamics of CD57 and CD57+ memory T cells (Costa Del Amo et al., 2018; Patel et al., 2017). These subsets were modeled as dependent populations to investigate the Mechanistic ordinary differential equation-based models were developed to assess the dynamics of CD57 and CD57+ memory Cell Reports 33, 108501, December 15, 2020 e3 Cell Reports 33, 108501, December 15, 2020 e3 Cell Reports 33, 108501, December 15, 2020 e3 Report Estimation of Telomere Length Change st at o o e o e e e gt C a ge The rate of change in telomere loss indices for CD57 memory T cells was defined according to a previous report (De Boer and Noest, 1998) as follows: g g mere loss indices for CD57 memory T cells was defined according to a previous report (De Boer and Noes 1998) as follows: dm1 dt = 2p1 dm2 dt = 2p2  mRðm2  m1  KÞ e4 Cell Reports 33, 108501, December 15, 2020 Report R t ll OPEN ACCESS where p1, p2, m, and R are as above, K is the length of telomere loss upon clonal expansion in units of division, and m1 and m2 are the average number of divisions undergone by CD57 and CD57+ memory T cells, respectively. The difference in telomere length be- tween CD57 and CD57+ memory T cells was estimated as: D = ðm2  m1Þε where ε is the average number of base pairs (bp) lost per division (taken to be 50 bp [De Boer and Noest, 1998]), giving the following expression for the difference in telomere length: DC = ε 2ðp2  p1Þ mR + K  Cell Reports 33, 108501, December 15, 2020 e5 Fitting Procedure g ocedu e The function U(t) was fitted to the deuterium labeling data measured in saliva, and the free parameters f, b, and d were estimated for each individual. The resulting parameterized U(t) functions were then used as fixed inputs during simultaneous fitting of the deuterium labeling and telomere length data from CD57 and CD57+ memory T cells using the equations for L1, L2, and DC above. The free parameters were p1, p2, z1, z2, and mR. As telomerase is highly active during clonal expansion, the telomere length loss index (K) was initially set to 0 (Bodnar et al., 1996; Collins, 2006). This assumption was subsequently relaxed to explore the impact of variations in K (Figure S6). The contribution of self-renewal to the production of new CD57+ memory T cells was defined as: contribution from self­renewal = p2x2 p2x2 + mx1 = p2 p2 + mR To ensure that the labeling data and the telomere length data contributed equally to the fit, all residuals were normalized by the mean, and the deuterium residuals were divided by the number of labeling data points. Conclusions were analyzed for robustness against changes in the number of telomere base pairs lost per division. Scenarios in which CD57+ memory T cells did not proliferate were also tested by fixing p2 to 0. Model performance was evaluated using the F test and the AICc (Burnham and Anderson, 2002). The model was fitted to the data using non-linear least-squares regression implemented via the algorithm Pseudo in the FME package in R (Soe- taert and Petzoldt, 2010).
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Working of Reindeer’s Antlers at the Neolithic – Bronze Age Settlement Mayak 2 (Murmansk region)
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ПОВОЛЖСКАЯ АРХЕОЛОГИЯ № 3 (45) 2023 e-ISSN 2500-2856 № 3 (45) 2023 ПОВОЛЖСКАЯ АРХЕОЛОГИЯ Редакционный совет: Б.А. Байтанаев – академик НАН РК, доктор исторических наук (Алматы, Казахстан) (председатель), Х.А. Амирханов – академик РАН, доктор исторических наук, профессор (Москва, Россия), С.Г. Бочаров – кандидат исторических наук (Севастополь, Россия), П. Георгиев – доктор наук, доцент (Шумен, Болгария), Е.П. Казаков – доктор истори- ческих наук (Казань, Россия), Н.Н. Крадин – член-корреспондент РАН, доктор истори- ческих наук, профессор (Владивосток, Россия), А. Тюрк – Ph.D. (Будапешт, Венгрия), А.А. Тишкин – доктор исторических наук профессор (Барнаул, Россия), В.С. Синика – кандидат исторических наук (Тирасполь, Молдова), Б.В. Базаров – академик РАН, доктор исторических наук, профессор (Улан-Удэ, Россия), Д.С. Коробов – доктор исторических наук, профессор РАН (Москва, Россия), О.В. Кузьмина – кандидат исторических наук (Са- мара, Россия), П. Дегри – профессор (Лёвен, Бельгия), Вэй Джан – Ph.D, профессор (Пе- кин, Китай), А.С. Сагдуллаев – академик АН РУз, доктор исторических наук, профессор (Ташкент, Узбекистан), Р.Х. Сулейманов – доктор исторических наук, профессор (Таш- кент, Узбекистан). Заместители главного редактора: Заместители главного редактора: член-корреспондент АН РТ, доктор исторических наук Ф.Ш. Хузин доктор исторических наук Ю.А. Зеленеев Ответственный секретарь – кандидат ветеринарных наук Г.Ш. Асылгараева Главный редактор академик АН РТ, доктор исторических наук А.Г. Ситдиков Executive Editors: B. A. Baitanayev – of the Nacional Academy of the RK, Doctor of Historical Sciences (Almaty, Republic of Kazakhstan) (chairman), Kh. A. Amirkhanov – Academician of RAS, Doctor of Historical Sciences, Professor (Moscow, Russian Federation), S. G. Bocharov – Candidate of Historical Sciences (Sevastopol, Russian Federation), P. Georgiev – Doctor of Historical Sciences (Shumen, Bulgaria), E. P. Kazakov – Doctor of Historical Sciences (Kazan, Russian Federation), N. N. Kradin – Doctor of Historical Sciences, Corresponding Member of the Russian Academy of Sciences (Vladivostok, Rus- sian Federation), А. Türk – Ph.D. (Budapest, Hungary), A.A. Tishkin – Doctor of Historical Sciences, Professor (Barnaul, Russian Federation), V. S. Sinika – Candidate of Historical Sciences (Tiraspol, Moldova), B. V. Bazarov – Academician of RAS, Doctor of Historical Sciences, Professor (Ulan-Ude, Russian Federation), D. S. Korobov – Doctor of Historical Sciences, Professor (Moscow, Russian Federation), O. V. Kuzmina – Candidate of Historical Sciences (Samara, Russian Federation), P. De- gryse – Professor (Leuven, Belgium), Wei Jian – Ph.D, Professor (Beijing, China), A. S. Sagdullaev – Academician of the National Academy of the Republic of Uzbekistan, Doctor of Historical Sciences, Professor (Tashkent, Republic of Uzbekistan), R. Kh. 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Выборнов – доктор исторических наук, профессор (Самара, Россия) М.Ш. Галимова – кандидат исторических наук (Казань, Россия) Р.Д. Голдина – доктор исторических наук, профессор (Ижевск, Россия) С.В. Кузьминых – кандидат исторических наук (Москва, Россия) А.Е. Леонтьев – доктор исторических наук (Москва, Россия) Т.Б. Никитина – доктор исторических наук (Йошкар-Ола, Россия) А.А. Чижевский – кандидат исторических наук (Казань, Россия) Ответственный за выпуск: М.Ш. Галимова – кандидат исторических наук Адрес редакции: 420012 г. Казань, ул. Бутлерова, 30 Телефон: (843) 236-55-42 E-mail: arch.pov@mail.ru http://archaeologie.pro Индекс ПП753, электронный Каталог печатных изданий "ПОЧТА РОССИИ" Выходит 4 раза в год Издательство «Фəн» Казань, Татарстан Казань, Татарстан Казань, Татарстан POVOLZHSKAYA ARKHEOLOGIYA THE VOLGA RIVER REGION ARCHAEOLOGY e-ISSN 2500-2856 № 3 (45) 2023 Editor-in-Chief: Academician of the Tatarstan Academy of Sciences, Doctor of Historical Sciences A. G. Sitdikov Deputy Chief Editors: Corresponding Member of the Tatarstan Academy of Sciences, Doctor of Historical Sciences F. Sh. Khuzin Doctor of Historical Sciences Yu. A. Zeleneev Executive Secretary – Candidate of Veterinary Sciences G. Sh. Asylgaraeva Editorial Board: © Tatarstan Academy of Sciences (TAS), 2023 © Mari State University, 2023 © “Povolzhskaya Arkheologiya” Journal, 2023 Editorial Board: A. A. Vybornov – Doctor of Historical Sciences, Professor (Samara State Academy of Social Sciences and Humanities, Samara, Russian Federation) M. Sh. Galimova – Candidate of Historical Sciences (Institute of Archaeology named after A. Kh. Khalikov, Kazan, Russian Federation) R. D. Goldina – Doctor of Historical Sciences, Professor (Udmurt State University, Izhevsk, Russian Federation) S. V. Kuzminykh – Candidate of Historical Sciences (Institute of Archaeology of the Russian Academy of Sciences, Moscow, Russian Federation) А. Е. Leont’ev – Doctor of Historical Sciences (Institute of Archaeology of the Russian Academy of Sciences, Moscow, Russian Federation) Т. B. Nikitina – Doctor of Historical Sciences (Mari Research Institute of Language, Literature and History named after V. M. Vasilyev, Yoshkar-Ola, Russian Federation) A.A. Chizhevsky – Candidate of Historical Sciences (Institute of Archaeology named after A. Kh. Khalikov, Kazan, Russian Federation) Responsible for Issue M. Sh. Galimova – Candidate of Historical Sciences Editorial Offi ce Address: Butlerov St., 30, Kazan, 420012, Republic of Tatarstan, Russian Federation Telephone: (843) 236-55-42 E-mail: arch.pov@mail.ru http://archaeologie.pro Publishing House “Fän” Kazan, Tatarstan ПОВОЛЖСКАЯ АРХЕОЛОГИЯ № 3 (45) 2023 СОДЕРЖАНИЕ Андреев К.М., Выборнов А.А., Андреева О.В. (Самара, Россия), Кулькова М.А. (Санкт-Петербург, Россия) Поселение Сокольный VIII – новая стоянка позднего неолита Марийского Поволжья ........................................................................................8 Дога Н.С., Выборнов А.А., Гилязов Ф.Ф., Сомов А.В. (Самара, Россия), Гречкина Т.Ю. (Астрахань, Россия) Новый памятник неолита в Северном Прикаспии ..............................................25 Скоробогатов А.М. (Воронеж, Россия), Долбунова Е.В. (Санкт-Петербург, Россия), Рослякова Н.В. (Самара, Россия), Гасилин В.В. (Екатеринбург, Россия) Ранний неолит Среднего Дона в свете современных исследований (по материалам стоянки Черкасская-5) ...........................................................38 Голованова Л.В., Дороничев В.Б., Резепкин А.Д., Дороничева Е.В. (Санкт-Петербург, Россия), Паламарчук Р.С. (Миасс, Россия) От эпипалеолита до средневековья. Предварительные результаты изучения «Навеса у Алебастрового завода» в Приэльбрусье .......................46 Корочкова О.Н. (Екатеринбург, Россия) Среднее Зауралье и Западная Сибирь: от эпохи камня к эпохе металла .........70 Григорьев С.А. (Екатеринбург, Россия) Хронология центральноевропейских импульсов в лесном Поволжье: фатьяновская и абашевская культуры .............................................................84 Кулькова М.А. (Санкт-Петербург, Россия) Природные и культурные трансформации на рубеже эпохи бронзы – раннего железного веков в степном поясе Евразии .......................................95 Каспаров А.Р. (Самарканд, Узбекистан) Погребальная практика сапаллинской культуры в отражении ведических текстов ...................................................................109 Мургабаев С.С., Бахтыбаев М.М., Малдыбекова Л.Д., Сиздиков Б.С. (Туркестан, Казахстан), Йовита Р. (Нью-Йорк, США) Археологические исследования южных склонов Каратау (комплекс Шимайлы) ......................................................................................118 Овсянников В.В. (Уфа, Россия) Исследования Ново-Уфимского могильника кара-абызской культуры в 2000 году .............................................................134 Бехтер А.П. (Санкт-Петербург, Россия) Φιλισκος ο μαχιμος (к интерпретации одного мирмекийского граффито) .......148 Васильев С.В., Боруцкая С.Б. (Москва, Россия), Желудков А.С. (Липецк, Россия), Пузанова Т.А. (Москва, Россия), Чендев Ю.Г. (Белгород, Россия), Бурова Н.Д., Лохова О.В. (Санкт-Петербург, Россия) Биоархеологические и палеоклиматические аспекты изучения населения Верхнего Подонья эпохи средней бронзы..................................158 POVOLZHSKAYA ARKHEOLOGIYA № 3 (45) 2023 Лозовская О.В., Фёдорова Д.Н., Малютина А.А., Такташева С.Д. (Санкт- Петербург, Россия) Типологический анализ и оценка костеобрабатывающего каменного инвентаря позднемезолитического слоя стоянки Замостье 2 .....................171 Лычагина Е.Л., Смертина А.Ю., Томилина Е.М. (Пермь, Россия) Каменные украшения с энеолитических памятников Верхнего и Среднего Прикамья (попытка комплексного анализа) ..........191 Малютина А.А., Мурашкин А.И., Такташева С.Д. (Санкт-Петербург, Россия) Обработка рога северного оленя на поселении неолита – эпохи бронзы Маяк 2 (Мурманская обл.) ...........204 Блышко Д.В., Данилов Г.К. (Санкт-Петербург, Россия), Жульников А.М. (Петрозаводск, Россия), Недомолкина Н.Г. (Вологда, Россия), Тарасов А.Ю. (Петрозаводск, Россия) Особенности использования асбеста населением Восточной Фенноскандии во второй половине IV тыс. до н. э. (по материалам стоянки-мастерской Фофаново XIII) ................................219 Утубаев Ж.Р. (Алматы, Казахстан), Болелов С.Б. (Москва, Россия), Калиева Ж.С., Суюндикова М.К., Касенова А.Д. (Алматы, Казахстан) Экспериментальные работы по изготовлению керамики чирикрабатской культуры ..............................................................................235 Список сокращений .............................................................................................248 Правила для авторов ............................................................................................250 ПОВОЛЖСКАЯ АРХЕОЛОГИЯ № 3 (45) 2023 CONTENT Andreev K.M., Vybornov A.A., Andreeva O.V. (Samara, Russian Federation), Kulkova M.A. (Saint Petersburg, Russian Federation) The Sokolniy VIII Settlement – the New Site of the Late Neolithic in the Mari Volga Basin .....................................................8 Doga N.S., Vybornov A.A., Gilyazov F.F., Somov A.V. (Samara, Russian Federation), Grechkina T.Y. (Astrakhan, Russian Federation) A New Neolithic Site in the Nothern Caspian Region.............................................25 Skorobogatov A.M. (Voronezh, Russian Federation), Dolbunova E.V. (Saint Petersburg, Russian Federation), Roslyakova N.V. (Samara, Russian Federation), Gasilin V.V. (Ekaterinburg, Russian Federation) Early Neolithic of the Middle Don in the Light of Current Research (based on materials from the Cherkasskaya-5 site) ............................................38 Golovanova L.V., Doronichev V.B., Rezepkin A.D., Doronicheva E.V. (Saint Petersburg, Russian Federation), Palamarchuk R.S. (Miass, Russian Federation) From the Epipaleolithic to the Middle Ages. Preliminary Research Results of the “Alebastroviy Zavod Rockshelter” in the Elbrus Region .........................46 Korochkova O.N. (Ekaterinburg, Russian Federation) Middle Trans-Urals and Western Siberia: from the Stone Age of to the Metal Age .............................................................70 Grigoriev S.A. (Ekaterinburg, Russian Federation) Chronology of Central European Impulses in the Volga Forest Region: Fatyanovo and Abashevo Cultures .........................84 Kulkova M.A. (Saint Petersburg, Russian Federation) Environmental and Cultural Transformations at the Turn of the Late Bronze and Early Iron Age in the Steppe Belt of Eurasia ...............................................95 Kasparov A.R. (Samarkand, Uzbekistan) Funeral Practice of the Sapalli Culture in the Refl ection of Vedic Texts ..............109 Murgabayev S.S., Bakhtybayev M.M., Maldybekova L.D., Sizdikov B.S. (Turkestan, Republic of Kazakhstan), Jovita R. (New York, USA) Archaeological Research of the Southern Slopes of Karatau (Shimayla Complex) .........................................................................................118 Ovsyannikov V.V. (Ufa, Russian Federation) The Studies of the Novo-Ufa Burial Ground in 2000 ............................................134 Bekhter A.P. (Saint Petersburg, Russian Federation) ΦΙΛΙΣΚΟΣ Ο ΜΑΧΙΜΟΣ (to the Interpretation of the Graffi to from Myrmekion) ...................................148 Vasilyev S.V., Borutskaya S.B. (Moscow, Russian Federation), Zheludkov A.S. (Lipetsk, Russian Federation), Puzanova T.A. (Moscow, Russian Federation), POVOLZHSKAYA ARKHEOLOGIYA № 3 (45) 2023 Chendev Yu.G. (Belgorod, Russian Federation), Burova N.D., Lokhova O.V. (Saint Petersburg, Russian Federation) Bioarchaeology and Paleoclimate Aspects of the Study of the Upper Don Region Population of the Middle Bronze Age ..............................................................158 Lozovskaya O.V., Fedorova D.N., Malyutina A.A., Taktasheva S.D. (Saint Petersburg, Russian Federation) Typological Analysis and Assessment of the Bone-Working Stone Inventory of the Zamostje 2 Late Mesolithic Layer .........................................................171 Lychagina E.L., Smertina A.Y., Tomilina E.M. 1 Исследование выполнено при поддержке гранта РНФ, проект № 23-28-00543: «Тради- ции косторезного производства в арктической зоне Фенноскандии в неолите и бронзовом веке». https://doi.org/10.24852/pa2023.3.45.204.218 https://doi.org/10.24852/pa2023.3.45.204.218 CONTENT (Perm, Russian Federation) Stone Decorations from the Chalcolithic Sites of the Upper and Middle Kama Region (an attempt at complex analysis) ...........................191 Malyutina A.A., Murashkin A.I., Taktasheva S.D. (Saint Petersburg, Russian Federation) Working of Reindeer’s Antlers at the Neolithic – Bronze Age Settlement Mayak 2 (Murmansk region) ..........................................................204 Blyshko D.V., Danilov G.K. (Saint Petersburg, Russian Federation), Zhul’nikov А.М. (Petrozavodsk, Russian Federation), Nedomolkina N.G. (Vologda, Russian Federation), Tarasov А.Yu. (Petrozavodsk, Russian Federation) Specifi cs of Asbestos Utilization in the Second Half of the 4th Millenium Bc in the Eastern Fennoscandia (on the materials of lithic workshop Fofanovo XIII) .......................................219 Utubayev Zh.R. (Almaty, Republic of Kazakhstan), Bolelov S.B. (Moscow, Russian Federation), Kalieva Zh.S., Suyundikova M.K., Kassenova A.D. (Almaty, Republic of Kazakhstan) Experimental Work on the Production of Ceramics of the Chirik-Rabat Culture ..............................................................................235 List of Abbreviations ............................................................................................. 248 Submissions .......................................................................................................... 250 № 3 (45) 2023 ПОВОЛЖСКАЯ АРХЕОЛОГИЯ УДК 902/904 ОБРАБОТКА РОГА СЕВЕРНОГО ОЛЕНЯ НА ПОСЕЛЕНИИ НЕОЛИТА – ЭПОХИ БРОНЗЫ МАЯК 2 (МУРМАНСКАЯ ОБЛ.)1 © 2023 г. А.А. Малютина, А.И. Мурашкин, С.Д. Такташева Гури- ной, неолитические материалы были 204 Малютина А.А., Мурашкин А.И., Такташева С.Д. Рис. 1. Карта Кольского полуострова с указанием расположения поселения Маяк 2 (топооснова GEBCO Web Map Service). Fig. 1. A map of the Kola Peninsula indicating the location of the settlement Mayak 2 (topographic basis GEBCO Web Map Service). Рис. 1. Карта Кольского полуострова с указанием расположения поселения Маяк 2 (топооснова GEBCO Web Map Service). Fig. 1. A map of the Kola Peninsula indicating the location of the settlement Mayak 2 (topographic basis GEBCO Web Map Service). ОБРАБОТКА РОГА СЕВЕРНОГО ОЛЕНЯ НА ПОСЕЛЕНИИ НЕОЛИТА – ЭПОХИ БРОНЗЫ МАЯК 2 (МУРМАНСКАЯ ОБЛ.)1 © 2023 г. А.А. Малютина, А.И. Мурашкин, С.Д. Такташева В статье представлены предварительные результаты трасологического анализа ар- тефактов из рога северного оленя (Rangifer tarandus), найденных на поселении Маяк 2 (Мурманская обл.). Памятник, раскопанный в 1979–1984 гг. Н.Н. Гуриной, датируется неолитом – бронзовым веком. Уникальная коллекция включает более 1800 разнообраз- ных изделий из твердых органических материалов. Изучение способов обработки рога северного оленя по данным макро- и микроскопического анализа технологических следов проведено впервые. В результате исследования 250 артефактов, включающих отходы производства, заготовки и законченные изделия, удалось выявить два техно- логических приема раскройки данного сырья для получения заготовок. Первый вклю- чал продольную и поперечную рубку рога, которая могла выполняться каменными или металлическими орудиями, второй – прорезание продольных и поперечных пазов с последующим делением по ним. Установлено, что базальная часть рога фактически не использовалась (обнаружен один случай); подавляющее большинство орудий, предме- тов быта и украшений изготавливалась из медиальной части – ствола. Отростки рогов использовались редко и для ограниченного набора изделий. Ключевые слова: археология, Арктика, Фенноскандия, Маяк 2, неолит, бронзовый век, рог северного оленя, трасология, технология, следы обработки, технологические цепочки, традиции, техники. Для памятников Кольского п-ова и Северной Фенноскандии в целом, где изделия из твёрдых органических материалов (кость, рог, зубы и пр.) довольно редки в силу сохранности, вопросы обработки этого сырья прак- тически не рассматривались. Анали- тике подвергалась главным образом типология инвентаря с описанием ос- новных категорий в неолите – бронзо- вом веке (Мурашкин, Киселёва, 2018; Колпаков и др., 2019, с. 406–435). Во- просам технологии и функции этих материалов с разных памятников Се- верной Фенноскандии посвящены единичные работы (David, Bergsvik, 2015; David, Sørensen, 2016; Мураш- кин и др., 2019; Малютина, 2019). Уникальная по разнообразию и со- хранности коллекция изделий из ко- сти, рога и зубов многослойного посе- ления Маяк 2 позволяет восстановить цепочку технологических операций от выбора сырья до конечного пред- мета, раскрыть особенности этого производства и впервые для архео- логии Северной Европы поставить проблему транзита техник в условиях перехода от использования каменных инструментов для обработки рога к металлическим. Поселение Маяк 2 находится в северной части Кольского п-ова на побережье Дроздовской губы Но- куевского залива Баренцева моря (рис. 1). Памятник был исследован КолАЭ ЛОИА АН СССР под руковод- ством Н.Н. Гуриной в 1979–1984 гг. на площади 1032 кв. м. Культурный слой разбирался условными горизонтами 0,15–0,18 м с фиксацией по квадратам 2×2 м (всего 4 горизонта). Стратигра- фия культурных отложений и распре- деление разновозрастных материалов на площади поселения чрезвычайно сложны и требуют отдельного иссле- дования. Так, по данным Н.Н. лан, 2013). лан, 2013). найдены в 4 горизонте в центральной части поселения, и в 1 и 2 горизонте – в южной (Гурина, 1997). Согласно последним результатам изучения концентрации находок из камня, фа- унистических остатков и анализа ке- рамики, на поселении выделяется 14 объектов (остатков жилищ, раковин- ных куч). В центральной части посе- ления, в горизонтах 1 и 2, отмечается концентрация материалов конца не- олита – начала бронзового века (Ки- селева, Мурашкин, 2019). По резуль- татам радиоуглеродного датирования древесного угля и нагара на керами- ке поселение датируется в интервале 4730–1430 cal BC (Мурашкин, Карпе- Среди фаунистических остат- ков кости морских млекопитающих (гренландский тюлень, кольчатая нерпа, морж) составляют до 90%, остальное – северный олень, медведь, бобр, песец, птицы и рыбы. Из рога северного оленя, костей крупных на- земных животных, зубов морских и наземных млекопитающих изготов- лено 564 изделия различных катего- рий; еще 1272 предмета имеют следы обработки (Шумкин, 1984, с. 95–96; Гурина, 1997). Трасологический ана- лиз всей коллекции, начатый в 2019 г., еще не завершен; на настоящий мо- мент исследовано 410 предметов. 205 ПОВОЛЖСКАЯ АРХЕОЛОГИЯ № 3 (45) 2023 Определены их функции, а также по- лучены общие представления о тех- нике и приёмах обработки различных видов сырья. Наблюдается отчетливая корреляция между видом сырья и от- дельными категориями инвентаря: для рыболовных крючков и наконеч- ников гарпунов использовался глав- ным образом рог северного оленя, для других орудий труда (скребки для шкур, долота, ножи-острия, кинжалы, проколки) – длинные трубчатые кости животных (Малютина, Мурашкин, 2022). конкретных артефактов» (Гиря, 2019, c. 67). Конечной целью метода являет- ся получение данных для реконструк- ции хозяйственных систем прошлого с выявлением конкретных видов де- ятельности (Коробкова, Щелинский, 1996, с. 6). Полученные выводы вхо- дят в общий контекст исследуемого памятника, периода, эпохи. конкретных артефактов» (Гиря, 2019, c. 67). Конечной целью метода являет- ся получение данных для реконструк- ции хозяйственных систем прошлого с выявлением конкретных видов де- ятельности (Коробкова, Щелинский, 1996, с. 6). Полученные выводы вхо- дят в общий контекст исследуемого памятника, периода, эпохи. Для выполнения задач исследова- ния использовались следующее обо- рудование и программное обеспече- ние: – стереомикроскоп МБС-9 (косо- направленное освещение; увеличение до 98 крат); ) Целью настоящего исследования является реконструкция технологии обработки рога северного оленя в не- олите – бронзовом веке. Поэтому ра- бота была сфокусирована на анализе отходов производства и заготовок. Изучение этих групп инвентаря по- зволяет со всеми подробностями вос- становить последовательность опера- ций и используемых технологических приёмов при создании готовых изде- лий. лан, 2013). Для реконструкции полных тех- нологических цепочек обработки рога северного оленя (от выбора сырья до финального предмета) нами была так- же просмотрена серия завершенных орудий, украшений и других предме- тов быта – всего 250 артефактов. – установка для макросъёмки с воз- можностью микрофокусировки в со- четании с камерой Canon EOS 450D, Canon EOS R6 в сочетании с объекти- вами Canon Macro EF-S 100 mm f/2.8L Macro IS USM и Canon Macro EF-S 60 mm 1:2.8 USM при косонаправленном внешнем освещении светодиодными и люминесцентными осветителями; – установка для макросъёмки с воз- можностью микрофокусировки в со- четании с камерой Canon EOS 450D, Canon EOS R6 в сочетании с объекти- вами Canon Macro EF-S 100 mm f/2.8L Macro IS USM и Canon Macro EF-S 60 mm 1:2.8 USM при косонаправленном внешнем освещении светодиодными и люминесцентными осветителями; – программное обеспечение Canon EOS Utility, Helicon Focus. y Рог северного оленя как поделочное сырьё y Рог северного оленя как поделочное сырьё Анализ технологии древнейших производств начинается с анализа сырьевой базы; исследования, посвя- щенные обработке рога различных промысловых животных в каменном веке, проводились как в России, так и за рубежом (Жилин, 2010; Louwe Kooijmans et al., Pétillon, Ducasse, 2012; Elliot, 2012). Домашний север- ный олень на обширной территории Арктики является и в наши дни ос- новой хозяйства для многих абори- генных культур (Klokkernes, 2007, p. 11, fi g. 0. 1). Вопрос появления специализированного оленеводства, однако, до сих пор остаётся дискус- сионным, как и разделение по кост- ным остаткам диких животных или изъятых из природного окружения для перевозки людей (Helskog, 2011; Helskog, Indrelid, 2011). Считает- р ф Методика исследования Mayak 2. Production waste. The basal part of the reindeer antler with a chopped off fragment of the skull and the rod cut off along the grooves (photo by S.D. Taktasheva). Рис. 3. Маяк 2. Отход производства. Базальная часть рога северного оленя с отрублен ным фрагментом черепной коробки и отрезанным по пазам стволом (фото С.Д. Такташевой). Fig. 3. Mayak 2. Production waste. The basal part of the reindeer antler with a chopped off fragmen of the skull and the rod cut off along the grooves (photo by S.D. Taktasheva). более удобного описания мы будем использовать в дальнейшем схематич- ное деление скульптуры рога на ба- зальную, медиальную и дистальную части (рис. 2). а также следы от прорезанных пазов вдоль и поперёк ствола или отростка рога (рис. 5). Зафиксировано также простое отламывание отростков рога без предварительного надрубания или прорезания с образованием негати- вов расщепления на сторону слома (рис. 6: 1). Взрослые самцы сбрасывают рога в ноябре-декабре, молодые животные – в апреле-мае, самки – в мае-июне. Проведённый анализ фрагментов рога со следами обработки с поселе- ния Маяк 2 показал, что в качестве поделочного сырья в большинстве случаев использовались сброшенные рога (рис. 4: 1; рис. 5: 1), но имеются и вырубленные из черепной коробки фрагменты (рис. 3). Определение по- ловозрастного состава животных по имеющемуся обработанному рогово- му сырью не проводилось. Процесс рубки мог быть круговым – с полным охватом короткого сечения ствола или отростка (рис. 4: 4), по- лукруговым – с частичным охватом ствола или отростка (рис. 4: 6), или встречным – при работе на плоских участках рога (рис. 4: 3). По сохра- нившимся следам рубки – негативам от ударов – была установлена разница в используемых инструментах. Нами отмечены следы в виде прямых от- резков длиной до 15 мм с V-образным сечением (рис. 4: 3), а также слегка вогнутые, накладывающиеся друг на друга, короткие срезы длиной до 10 мм (рис. 4: 4). В пределах одного такого негатива иногда удавалось за- фиксировать как множественные ли- нейные следы – негативы зубчатого неровного каменного лезвия (рис. 6: 5), так и прямые, ровно срезанные борта – негативы от лезвий шлифо- ванных каменных или, возможно, ме- таллических рубящих инструментов Результаты. Технология обработ- ки рога северного оленя Согласно проведённому трасоло- гическому анализу, процесс обработ- ки рога северного оленя на поселении Маяк 2 можно разделить на два этапа: 1) получение заготовки; 2) обработка заготовки и получение готового изде- лия. р ф Методика исследования р ф Методика исследования Работа с коллекцией артефактов из рога северного оленя из поселения Маяк 2 производилась в рамках ме- тодики экспериментально-трасологи- ческого анализа (Семёнов, 1957; Ко- робкова, Щелинский, 1996; Maigrot, 2003; Marreiros et al., 2015). Экспери- ментально-трасологический метод в археологии, разработанный С.А. Се- мёновым и усовершенствованный его учениками и последователями, по- зволяет интерпретировать технологии изготовления и функции первобыт- ных изделий на основе «исследования следов изготовления, следов исполь- зования и следов общего неутили- тарного износа в контексте формы 206 Малютина А.А., Мурашкин А.И., Такташева С.Д. Рис. 2. Рог северного оленя (Rangifer tarandus) и его элементы (рисунок А.А. Малютиной). Fig. 2. Reindeer antler (Rangifer tarandus) and its elements (drawing by A.A. Malyutina). Рис. 2. Рог северного оленя (Rangifer tarandus) и его элементы (рисунок А.А. Малютиной). (р у ) Fig. 2. Reindeer antler (Rangifer tarandus) and its elements (drawing by A.A. Malyutina). ся, что на севере Западной Сибири одомашнивание северного оленя от- носится к раннему железному веку; основанием для этого является обна- ружение элементов упряжи из рога и фрагментов деревянных повозок (Гу- сев и др., 2016). Современные иссле- дования по остеометрии костей до- машнего северного оленя позволяют наметить признаки изменения скелета в результате одомашнивания (Pelletier et al., 2020; Berg et al., 2023). Обрезка рогов северного оленя (самцов) как элемент их приручения современны- ми оленеводами также может быть учтена археологами (Grøn, 2011). ках, или розанах (Акаевский, 1939, с. 319; Hillson, 1999), и характерны как для самцов, так и самок. Рога пред- ставляют собой кожные образования, в которых по мере старения образует- ся костная ткань, сначала губчатая, а в дальнейшем становящаяся более ком- пактной. Окостеневший рог в моло- дом возрасте покрыт снаружи мягкой кожей, которая со временем отмирает и слущивается, так что рога становят- ся голыми костными образованиями без полости. Поверхность рогов до- вольно гладкая, иногда с сосудистыми желобками. Данная черта позволяет легко и достоверно различать рог се- верного оленя от других оленевых. В строении рога северных оленей вы- деляют округлый в сечении основной ствол, от которого отходят многочис- ленные отростки, количество и фор- ма которых крайне непостоянны. Для Остановимся подробнее на особен- ностях строения и морфологии рога северного оленя (Rangifer tarandus). Рога этого животного, как и всех оле- невых, формируются на костных вы- ростах лобных костей черепа – пень- 207 ПОВОЛЖСКАЯ АРХЕОЛОГИЯ № 3 (45) 2023 Рис. 3. Маяк 2. Отход производства. Базальная часть рога северного оленя с отрублен- ным фрагментом черепной коробки и отрезанным по пазам стволом (фото С.Д. Такташевой). Fig. 3. р ф Методика исследования К следам, связанным с получени- ем заготовки, нами отнесены: следы продольной рубки по длинной линии ствола или отростков рога (рис. 4: 2) и следы поперечной рубки (рис. 4: 3), 208 Малютина А.А., Мурашкин А.И., Такташева С.Д. (рис. 6: 3). Предположение о вероятном ис- пользовании металла для обработки неолита – бронзового века Кольског п-ова неоднократно высказывалос рядом исследователей (Гурина 1997 Рис. 4. Маяк 2. 1, 2 – отходы производства из рога северного оленя; 5 – заготовка; 3, 4, 6 – макрофотографии следов рубки – (фото А.А. Малютиной и С.Д. Такташевой Fig. 4. Mayak 2. 1, 2 – reindeer’s antler production wastes; 5 – preform; 3, 4, 6 – macrophotos of traces of chopping (photo by A.A. Malyutina and S.D. Taktasheva). Рис. 4. Маяк 2. 1, 2 – отходы производства из рога северного оленя; 5 – заготовка; 3, 4, 6 – макрофотографии следов рубки – (фото А.А. Малютиной и С.Д. Такташевой). Fig. 4. Mayak 2. 1, 2 – reindeer’s antler production wastes; 5 – preform; 3, 4, 6 – macrophotos of traces of chopping (photo by A.A. Malyutina and S.D. Taktasheva). неолита – бронзового века Кольского п-ова неоднократно высказывалось рядом исследователей (Гурина, 1997, с. 140; Поплевко, 2007). Эксперимен- неолита – бронзового века Кольского п-ова неоднократно высказывалось рядом исследователей (Гурина, 1997, с. 140; Поплевко, 2007). Эксперимен- (рис. 6: 3). (рис. 6: 3). Предположение о вероятном ис- пользовании металла для обработки кости и рога на памятниках позднего 209 ПОВОЛЖСКАЯ АРХЕОЛОГИЯ № 3 (45) 2023 ПОВОЛЖСКАЯ АРХЕОЛОГИЯ № 3 (45) 2023 ( ) 210 Рис. 5. Маяк 2. 1, 4, 5, 8 – отходы производства из рога северного оленя; 2, 3, 6, 7 – макрофотографии следов резания (фото А.А. Малютиной и С.Д. Такташевой). Fig. 5. Mayak 2.1, 4, 5, 8 – reindeer’s antler production wastes; 2, 3, 6, 7 – macrophotos of traces of cutting (photo by A.A. Malyutina and S.D. Taktasheva) Рис. 5. Маяк 2. 1, 4, 5, 8 – отходы производства из рога северного оленя; 2, 3, 6, 7 – макрофотографии следов резания (фото А.А. Малютиной и С.Д. Такташевой). Fig. 5. Mayak 2.1, 4, 5, 8 – reindeer’s antler production wastes; 2, 3, 6, 7 – macrophotos of traces of cutting (photo by A.A. Malyutina and S.D. Taktasheva) 210 Малютина А.А., Мурашкин А.И., Такташева С.Д. тально-трасологическое подтвержде- ние этой гипотезы (чистовая обработ- 2019). Продолжающийся анализ кол- лекции поселения Маяк 2 выявил 36 Рис. 6. Маяк 2. р ф Методика исследования 1 – axe/adze; 2, 3, 7 – harpoon heads; 4 – handle; 5 – fi sh hook; 6 – “crochet” hook; 8 – scraper; 9 – pendant; 10 – comb; 11 – knife; 12 – fragment of the item with zoomorphic pommel (photo by A.A. Malyutina and S.D. Taktasheva). ис. 7. Маяк 2. Изделия из рога северного оленя. 1 – топор/ тесло; 2, 3, 7 – наконечни- ки гарпунов; 4 – рукоять; 5 – рыболовной крючок; 6 – “вязальный” крючок; 8 – скребок; 9 – подвеска; 10 – гребень; 11 – нож; 12 – фрагмент изделия с зооморф- ным навершием (фото А.А. Малютиной и С.Д. Такташевой). Рис. 7. Маяк 2. Изделия из рога северного оленя. 1 – топор/ тесло; 2, 3, 7 – наконечни- ки гарпунов; 4 – рукоять; 5 – рыболовной крючок; 6 – “вязальный” крючок; 8 – скребок; 9 – подвеска; 10 – гребень; 11 – нож; 12 – фрагмент изделия с зооморф- ным навершием (фото А.А. Малютиной и С.Д. Такташевой). Fig. 7. Mayak 2. Items made of the reindeer’s antler. 1 – axe/adze; 2, 3, 7 – harpoon heads; 4 – handle; 5 – fi sh hook; 6 – “crochet” hook; 8 – scraper; 9 – pendant; 10 – comb; 11 – knife; 12 – fragment of the item with zoomorphic pommel (photo by A.A. Malyutina and S.D. Taktasheva). Рис. 7. Маяк 2. Изделия из рога северного оленя. 1 – топор/ тесло; 2, 3, 7 – наконечни- ки гарпунов; 4 – рукоять; 5 – рыболовной крючок; 6 – “вязальный” крючок; 8 – скребок; 9 – подвеска; 10 – гребень; 11 – нож; 12 – фрагмент изделия с зооморф- ным навершием (фото А.А. Малютиной и С.Д. Такташевой). Fig. 7. Mayak 2. Items made of the reindeer’s antler. 1 – axe/adze; 2, 3, 7 – harpoon heads; 4 – handle; 5 – fi sh hook; 6 – “crochet” hook; 8 – scraper; 9 – pendant; 10 – comb; 11 – knife; 12 – fragment of the item with zoomorphic pommel (photo by A.A. Malyutina and S.D. Taktasheva). р (ф Д ) Fig. 7. Mayak 2. Items made of the reindeer’s antler. р ф Методика исследования 1, 2, 4, 6–8, 10, 11 – заготовки из рога северного оленя; 3, 5, 9 – макрофотографии следов рубки (фото А.А. Малютиной и С.Д. Такташевой). Fig. 6. Mayak 2. 1, 2, 4, 6–8, 10, 11 – preforms made of reindeer antler; 3, 5, 9 – macrophotos of traces of chopping (photo by A.A. Malyutina and S.D. Taktasheva). Рис. 6. Маяк 2. 1, 2, 4, 6–8, 10, 11 – заготовки из рога северного оленя; 3, 5, 9 – макрофотографии следов рубки (фото А.А. Малютиной и С.Д. Такташевой). Fig. 6. Mayak 2. 1, 2, 4, 6–8, 10, 11 – preforms made of reindeer antler; 3, 5, 9 – macrophotos of traces of chopping (photo by A.A. Malyutina and S.D. Taktasheva). 2019). Продолжающийся анализ кол- лекции поселения Маяк 2 выявил 36 предметов из кости и рога со следами строгания металлическим лезвием (Малютина, Мурашкин, 2022). В на- стоящее время в памятниках бронзо- тально-трасологическое подтвержде- ние этой гипотезы (чистовая обработ- ка строганием бронзовыми ножами) было сделано авторами данной статьи для материалов Кольского Оленео- стровского могильника (Малютина, тально-трасологическое подтвержде- ние этой гипотезы (чистовая обработ- ка строганием бронзовыми ножами) было сделано авторами данной статьи для материалов Кольского Оленео- стровского могильника (Малютина, 211 ПОВОЛЖСКАЯ АРХЕОЛОГИЯ № 3 (45) 2023 ПОВОЛЖСКАЯ АРХЕОЛОГИЯ № 3 (45) 2023 Рис. 7. Маяк 2. Изделия из рога северного оленя. 1 – топор/ тесло; 2, 3, 7 – наконечни- ки гарпунов; 4 – рукоять; 5 – рыболовной крючок; 6 – “вязальный” крючок; 8 – скребок; 9 – подвеска; 10 – гребень; 11 – нож; 12 – фрагмент изделия с зооморф- ным навершием (фото А.А. Малютиной и С.Д. Такташевой). Fig. 7. Mayak 2. Items made of the reindeer’s antler. 1 – axe/adze; 2, 3, 7 – harpoon heads; 4 – handle; 5 – fi sh hook; 6 – “crochet” hook; 8 – scraper; 9 – pendant; 10 – comb; 11 – knife; 12 – fragment of the item with zoomorphic pommel (photo by A.A. Malyutina and S.D. Taktasheva). Рис. 7. Маяк 2. Изделия из рога северного оленя. 1 – топор/ тесло; 2, 3, 7 – наконечни- ки гарпунов; 4 – рукоять; 5 – рыболовной крючок; 6 – “вязальный” крючок; 8 – скребок; 9 – подвеска; 10 – гребень; 11 – нож; 12 – фрагмент изделия с зооморф- ным навершием (фото А.А. Малютиной и С.Д. Такташевой). Fig. 7. Mayak 2. Items made of the reindeer’s antler. Таблица 1 Таблица 1 Количественное распределение предметов из рога северного оленя поселения Маяк 2 по горизонтам. Группы нвентаря Горизонт (по полевым шифрам) Готовые предметы различного назначения Фрагменты изделий со следами обработки Заготовки Отходы производства Всего (экз.): 1 36 5 4 1 46 2 74 18 11 24 127 2-3 2 - - 2 4 3 23 6 7 13 49 3-4 - 1 - - 1 4 6 - - 1 7 Без горизонта 13 2 - 1 16 Всего (экз.): 154 32 22 42 250 Количественное распределение предметов из рога северного оленя поселения Маяк 2 по горизонтам. фрагментов (рис. 6: 2, 4, 6, 8, 11). В результате раскройки рога по проре- занным пазам получались удлинён- ные фрагменты – пластины (рис. 6: 7). Плоские участки рога (места рас- ширения ствола в отростки) (рис. 2) расщеплялись продольно на широкие пластины. Дальнейшая обработка та- ких заготовок позволяла получить готовые изделия различного назначе- ния (рис. 7): посредством продольной рубки и оттёски (рис. 6: 9), скобления и строгания каменными и металличе- скими инструментами, а также реза- ния (рис. 6: 10) и шлифовки с исполь- зованием абразивных материалов. вого века Кольского п-ова имеются прямые свидетельства производства и использования металлических (мед- ных и бронзовых) изделий, в том чис- ле одна литейная форма для отливки плоских топоров-тесел с поселения Маяк 2 (Мурашкин, 2022). Экспери- ментальное моделирование исполь- зования таких металлических орудий для обработки кости и рога станет предметом будущих работ. Второй технологический приём раскройки рога северного оленя на поселении Маяк 2 – это прорезание пазов с последующим делением по ним (рис. 5). Как и в случае с рубкой рога, прорезание пазов могло произво- диться поперек ствола (рис. 5: 2) или отростка (рис. 5: 7), так и вдоль него (рис. 5: 3, 5–7). Имеющиеся пазы уз- кие и отличаются ровными и прямы- ми бортами, в сечении П-образные. Борта пазов покрыты плохо различи- мыми линейными следами (рис. 5: 6). Окончания пазов, как правило, имеют своеобразные «усики» – результат со- скакивания лезвия в первые моменты работы по рогу. Все перечисленные признаки указывают на использова- ние тонкого каменного лезвия. Выводы и перспективы исследова- ния Исходя из результатов проведён- ного трасологического анализа мож- но заключить, что заготовки из рога северного оленя на поселении Маяк 2 служили основой для многих кате- горий орудий труда, предметов быта и украшений (рис. 7). Использование базальной части рога с отломанными отростками отмечено в единственном случае (рис. 6: 1). р ф Методика исследования 1 – axe/adze; 2, 3, 7 – harpoon heads; – handle; 5 – fi sh hook; 6 – “crochet” hook; 8 – scraper; 9 – pendant; 10 – comb; 11 – knife; f t f th it ith hi l ( h t b A A M l ti d S D T kt h ) 212 Малютина А.А., Мурашкин А.И., Такташева С.Д. Таблица 1 Количественное распределение предметов из рога северного оленя поселения Маяк 2 по горизонтам. Группы нвентаря Горизонт (по полевым шифрам) Готовые предметы различного назначения Фрагменты изделий со следами обработки Заготовки Отходы производства Всего (экз.): 1 36 5 4 1 46 2 74 18 11 24 127 2-3 2 - - 2 4 3 23 6 7 13 49 3-4 - 1 - - 1 4 6 - - 1 7 Без горизонта 13 2 - 1 16 Всего (экз.): 154 32 22 42 250 ПОВОЛЖСКАЯ АРХЕОЛОГИЯ № 3 (45) 2023 тате проведённого исследования мы можем говорить о двух технологиче- ских приёмах получения заготовок с использованием разного инструмен- тария – о рубке и резании. По данным трасологического анализа на памят- никах Харловка 1-6 и Усть-Дроздовка 3, относящихся к позднему неолиту и началу бронзового века, для получе- ния заготовок из рога северного оленя использовалась только техника рубки с последующим разделением круп- ных частей на фрагменты (Мурашкин и др., 2019, с. 96, рис. 5: 1-5). А в ма- териалах относящегося к бронзово- му веку Кольского Оленеостровского могильника отмечена только техника резания рога (Малютина, 2019, с. 442, рис. 6). Нельзя исключать, что разные техники раскройки рога северного оленя применялись в разные периоды. По нашим наблюдениям на про- тяжении неолита и бронзового века происходит постепенная стандартиза- ция изделий из кости и рога (Мураш- кин, Киселева, 2018, с. 118). Во 2 тыс. до н. э. появляются многочислен- ные свидетельства использования металлических инструментов для их обработки. Предполагается, что в эпоху бронзы происходило измене- ние структуры инвентаря – от, гру- бо говоря, индивидуальных вещей к стандартизированным, с одинаковой технологической и функциональной матрицей. Проведённый трасологиче- ский анализ и предварительная оценка коллекции изделий из рога северного оленя поселения Маяк 2 позволили выявить различия в следах обработки. Согласно нашим наблюдениям, при обработке кости и рога использова- лись как каменные, так и металличе- ские инструменты. Дальнейший ана- лиз всей коллекции в совокупности с экспериментальными наблюдениями позволит проследить динамику раз- вития древних техник в арктической зоне Фенноскандии. тате проведённого исследования мы можем говорить о двух технологиче- ских приёмах получения заготовок с использованием разного инструмен- тария – о рубке и резании. По данным трасологического анализа на памят- никах Харловка 1-6 и Усть-Дроздовка 3, относящихся к позднему неолиту и началу бронзового века, для получе- ния заготовок из рога северного оленя использовалась только техника рубки с последующим разделением круп- ных частей на фрагменты (Мурашкин и др., 2019, с. 96, рис. 5: 1-5). А в ма- териалах относящегося к бронзово- му веку Кольского Оленеостровского могильника отмечена только техника резания рога (Малютина, 2019, с. 442, рис. 6). Нельзя исключать, что разные техники раскройки рога северного оленя применялись в разные периоды. Медиальная часть рога (ствол, или ствол с медиальным отростком) ис- пользовалась для изготовления таких изделий как топоры/тёсла (рис. 7: 1), наконечники гарпунов (рис. 7: 2, 3, 7), рыболовные крючки (рис. 7: 5), руко- яти (рис. 7: 4) и “вязальные” крючки (рис. Таблица 1 Рабочее лезвие из- делия не сохранилось, следовательно, функцию предмета определить невоз- можно. Однако сохранившаяся часть очевидно является рукояткой, на что указывает интенсивная равномерная заполировка всей поверхности (кон- такт с руками). После разделки рога посредством рубки на крупные части в некоторых случаях производилось их продоль- ное раскалывание/расщепление с целью получения плоско-выпуклых 213 ПОВОЛЖСКАЯ АРХЕОЛОГИЯ ЛИТЕРАТУРА 1. Акаевский А.И. Анатомия северного оленя. Л.: Главсевморпуть, 1939. 328 с. 1. Акаевский А.И. Анатомия северного оленя. Л.: Главсевморпуть, 1939. 328 с. // 1. Акаевский А.И. Анатомия северного оленя. Л.: Главсевморпуть, 1939. 328 с. 2. Гиря Е.Ю. Кварцевые орудия поселения Лемья 19. 1 // Поселение Лемья 19.1 в верховьях Конды: от неолита до средневековья. Коллективная монография / Отв. ред. А.А. Погодин, А.Я. Труфанов. Екатеринбург: Альфа-Принт, 2019. С. 67–117. р р у 2. Гиря Е.Ю. Кварцевые орудия поселения Лемья 19. 1 // Поселение Лемья 19.1 в верховьях Конды: от неолита до средневековья. Коллективная монография / Отв. ред. А.А. Погодин, А.Я. Труфанов. Екатеринбург: Альфа-Принт, 2019. С. 67–117. д , руф р ур ф р , 3. Гурина Н.Н. История культуры древнего населения Кольского полуострова. СПб.: Петербургское Востоковедение, 1997. 240 с. , руф р ур ф р , 3. Гурина Н.Н. История культуры древнего населения Кольского полуострова. СПб.: Петербургское Востоковедение, 1997. 240 с. р ур , 4. Гусев А.В., Плеханов А.В., Фёдорова Н.В. Оленеводство на севере Запад- ной Сибири: ранний железный век – средневековье // Археология Арктики. Вып. 3 / Отв. ред. Д.С. Тупахин, Н.В. Федорова. Калининград: РОС-ДОАФК, 2016. С. 228–239. р д Д у , д р р д Д , 5. Жилин М.Г. Кость и рог как сырье для изготовления орудий в мезолите лесной зоны Восточной Европы и Зауралья // Вопросы археологии и истории каменного века. Cборник научных статей в честь 70-летия Л. В. Кольцова / Отв. ред. В.М. Воробьев. Тверь: Седьмая буква, 2010. С. 96–104. р Д у , р р Д , 5. Жилин М.Г. Кость и рог как сырье для изготовления орудий в мезолите лесной зоны Восточной Европы и Зауралья // Вопросы археологии и истории каменного века. Cборник научных статей в честь 70-летия Л. В. Кольцова / Отв. ред. В.М. Воробьев. Тверь: Седьмая буква, 2010. С. 96–104. 6. Киселева А.М., Мурашкин А.И. Культурная стратиграфия поселения Маяк 2 на Кольском полуострове // Эволюция неолитических культур Восточной Европы. Ма- териалы международной конференции, посвященной 120-летию М.Е. Фосс, 110-ле- тию Н.Н. Гуриной и 80-летию А.Т. Синюка / Ред. А.А. Выборнов, Е.В. Долбуновa, Е.М. Колпаков, Е.С. Ткач. СПб.: ИИМК РАН, ГЭ, Самара: СГСПУ, 2019. С. 37–39. https://doi.org/10.31600/978-5-91867-189-4-2019-37-40 6. Киселева А.М., Мурашкин А.И. Культурная стратиграфия поселения Маяк 2 на Кольском полуострове // Эволюция неолитических культур Восточной Европы. Ма- териалы международной конференции, посвященной 120-летию М.Е. Фосс, 110-ле- тию Н.Н. Гуриной и 80-летию А.Т. Синюка / Ред. А.А. Выборнов, Е.В. Долбуновa, Е.М. Колпаков, Е.С. Ткач. ПОВОЛЖСКАЯ АРХЕОЛОГИЯ 7: 6), наконечники стрел, дроти- ков и острог, различные персональные украшения-подвески и гребни для во- лос (рис. 7: 10), разнообразные пред- меты искусства (рис. 7: 12). Широкие плоские части рога шли на изготовле- ние скребков и ножей (рис. 7: 8, 11). Отростки рога, в силу своих неболь- ших размеров, сложно идентифициру- ются среди готовых изделий. Однако, и в данном случае, можно отметить некоторую связь между сырьём и ко- нечным продуктом. Так, установлено использование отростков в качестве отжимников при работе с камнем, а также для изготовления небольших украшений-подвесок (рис. 7: 9). По нашим наблюдениям на про- тяжении неолита и бронзового века происходит постепенная стандартиза- ция изделий из кости и рога (Мураш- кин, Киселева, 2018, с. 118). Во 2 тыс. до н. э. появляются многочислен- ные свидетельства использования металлических инструментов для их обработки. Предполагается, что в эпоху бронзы происходило измене- ние структуры инвентаря – от, гру- бо говоря, индивидуальных вещей к стандартизированным, с одинаковой технологической и функциональной матрицей. Проведённый трасологиче- ский анализ и предварительная оценка коллекции изделий из рога северного оленя поселения Маяк 2 позволили выявить различия в следах обработки. Согласно нашим наблюдениям, при обработке кости и рога использова- лись как каменные, так и металличе- ские инструменты. Дальнейший ана- лиз всей коллекции в совокупности с экспериментальными наблюдениями позволит проследить динамику раз- вития древних техник в арктической зоне Фенноскандии. Артефакты из рога обнаружены в разных горизонтах поселения, что позволяет предварительно оценить распределение тех или иных групп инвентаря (табл. 1). В горизонтах с первого по третий представлены все категории – от отходов сырья до за- вершенных, использованных и выбро- шенных изделий, что свидетельствует о полном производственном цикле. В четвертом горизонте обнаружено не- значительное количество предметов из твердых органических материалов, интересно, что большинство из них – законченные изделия. Чем объясняет- ся такая особенность неясно. Получение заготовок из рога се- верного оленя хорошо выверенными способами на поселении Маяк 2 в неолите – бронзовом веке демонстри- рует сложившийся технологических процесс (производственный цикл), когда мастер знал свойства самого сы- рья и хорошо представлял, из каких элементов рога лучше всего изгото- вить тот или иной предмет. В резуль- 214 Малютина А.А., Мурашкин А.И., Такташева С.Д. ЛИТЕРАТУРА СПб.: ИИМК РАН, ГЭ, Самара: СГСПУ, 2019. С. 37–39. https://doi.org/10.31600/978-5-91867-189-4-2019-37-40 p g 7. Колпаков Е.М., Мурашкин А.И., Хартанович В.И., Шумкин В.Я. Кольский Оле- неостровский могильник: 1925–2013. СПб; Вологда: Древности Севера, 2019. 480 с. p g 7. Колпаков Е.М., Мурашкин А.И., Хартанович В.И., Шумкин В.Я. Кольский Оле неостровский могильник: 1925–2013. СПб; Вологда: Древности Севера, 2019. 480 с. б 8. Коробкова Г.Ф., Щелинский В.Е. Методика микро-макроанализа древних ору дий труда. Ч. 1. СПб.: ИИМК РАН, 1996. 80 с. 9. Малютина А.А. Эксперимент и трасология // Колпаков Е.М., Мурашкин А.И., Хартанович В.И., Шумкин В.Я. Кольский Оленеостровский могильник (1925–2013). СПб: Вологда: Древности Севера, 2019. С. 436–459. Др р 10. Малютина А.А., Мурашкин А.И. Изделия из кости, рога и зубов животных на поселении неолита – эпохи бронзы Маяк 2 (Мурманская область) // Археология Ар- ктики. Тезисы докладов II Международной конференции / Отв. ред. Н.В. Федорова, А.В. Гусев. Салехард: Наука, 2022. C. 102–104. https://doi.org/10.7868/9785604610893036 11. Мурашкин А.И. Обработка и использование металла в позднем неолите и эпо- ху бронзы на Кольском Севере // Престижная экономика первобытных людей / Ред. А.М. Жульников, М.П. Отливанчик, Е.В. Свидерская. Петрозаводск: ПетрГУ, 2022. С. 155–175. 12. Мурашкин А.И., Карпелан К. Периодизация эпохи раннего металла Кольского полуострова на основании изучения керамики // Проблемы периодизации и хроноло- гии в археологии раннего металла Восточной Европы: Материалы тематической на- учной конференции / Отв. ред. Е.А. Черленок. СПб: Скифия-принт, 2013. С. 200–207. 12. Мурашкин А.И., Карпелан К. Периодизация эпохи раннего металла Кольского полуострова на основании изучения керамики // Проблемы периодизации и хроноло- гии в археологии раннего металла Восточной Европы: Материалы тематической на- учной конференции / Отв. ред. Е.А. Черленок. СПб: Скифия-принт, 2013. С. 200–207. р р р р учной конференции / Отв. ред. Е.А. Черленок. СПб: Скифия-принт, 2013. С. 200–207. 13. Мурашкин А.И., Малютина А.А., Киселёва А.М. Костяной и роговой инвентарь неолита – раннего железного века Северной Фенноскандии: типология, технология, трасология // Записки ИИМК РАН. Вып. 20 / Отв. ред. В.А. Лапшин. СПб.: ИИМК РАН, 2019. C. 85–103. https://doi.org/10.31600/2310-6557-2019-20-85-103 у ф р ц р д р ф р , 13. Мурашкин А.И., Малютина А.А., Киселёва А.М. Костяной и роговой инвентарь неолита – раннего железного века Северной Фенноскандии: типология, технология, трасология // Записки ИИМК РАН. Вып. 20 / Отв. ред. В.А. Лапшин. СПб.: ИИМК РАН, 2019. C. 85–103. https://doi.org/10.31600/2310-6557-2019-20-85-103 13. Мурашкин А.И., Малютина А.А., Киселёва А.М. Костяной и роговой инвентарь неолита – раннего железного века Северной Фенноскандии: типология, технология, трасология // Записки ИИМК РАН. Вып. 20 / Отв. ЛИТЕРАТУРА ред. В.А. Лапшин. СПб.: ИИМК РАН, 2019. C. 85–103. https://doi.org/10.31600/2310-6557-2019-20-85-103 14. Поплевко Г.Н. Трасологическое исследование изделий из кости и рога из могильника на Большом Оленьем острове Баренцева моря (предварительные наблю- дения) // Кольский сборник / Отв. ред. Л.Г. Шаяхметова. СПб: ИИМК РАН, 2007. С. 221–227. 15. Семенов С.А. Первобытная техника (Опыт изучения древнейших орудий и из- делий по следам работы) / МИА. № 54. М.-Л.: Изд-во АН СССР, 1957. 240 с. 16 Ш В Я К р ) 16. Шумкин В.Я. Каменная и костяная индустрии мезолита – раннего металл Кольского полуострова. Дисс. ... канд. ист. наук. Л., 1984. 227 с. 17. Berg M., Wallen H., Salmi A.K. The osteometric identifi cation of castrated reindeer (Rangifer tarandus) and the signifi cance of castration in tracing human-animal relationships in the North // Archaeological and Anthropological Sciences. Vol. 15, 3. 2023. Pp. 1–38. http://dx.doi.org/10.1007/s12520-022-01696-y É p g y 18. Bergsvik K.A., David É. Crafting bone tools in Mesolithic Norway: A Regional Eastern-Related Know-How // European Journal of Archaeology. Vol. 18 (2). 2015. pp. 190– 221 http://dx.doi.org/10.1179/1461957114Y.0000000073. É p g 19. David É., Sørensen M. First insights into the identifi cation of bone and antler too 215 ПОВОЛЖСКАЯ АРХЕОЛОГИЯ № 3 (45) 2023 used in the indirect percussion and pressure techniques during the early postglacial/ É. Da- vid., M. Sørensen // Quaternary International. Vol. 423. 2016. pp. 123–142. http://dx.doi. org/10.1016/j.quaint.2015.11.135 g j q 20. Grøn О. Reindeer antler trimming in modern large-scale reindeer pastoralism and parallels in an early type of hunter-gatherer reindeer herding system: Evenk ethnoarchaeology in Siberia // Quaternary International. Vol. 238. 2011. Pp. 76–82. http://dx.doi.org/10.1016/j. quaint.2011.01.025 q 21. Helskog K. Reindeer corrals 4700-4200 BC: Myth or reality? // Quaternary Interna tional. Vol. 238. 2011. pp. 25–34. http://dx.doi.org/10.1016/j.quaint.2010.10.001 pp p g j q 22. Helskog K., Indrelid S. Humans and reindeer// Quaternary International. Vol. 23 2011. pp. 1–3. http://dx.doi.org/10.1016/j.quaint.2011.03.018 pp p g j q 23. Hillson S. Mammal bones and teeth. An introductory guide to methods of identifi ca- tion. London, 1999. 64 p. 24. Klokkernes T. Skin processing technology in Eurasian Reindeer cultures. A com- parative study in material science of Sàmi and Evenk methods – perspectives on deterioration and preservation of museum artefacts. PhD thesis. The Royal Danish Academy of Fine Arts. The School of Conservation. Museum of cultural history University of Oslo, 2007. 236 p. y y , p 25. Maigrot Y. The research was carried out with the support of a grant from the Russian Science Foundation, project No. 23-28-00543: “Traditions of bone-cutting production in the Arctic zone of Fennoscandia in the Neolithic and Bronze Age”. ЛИТЕРАТУРА Etude technologique et fonctionnelle de l’outillage en matières dures animales, la station 4 de Chalain (Néolithique fi nal, Jura, France). PhD thesis. University of Paris I. Paris, 2003. 284 p. p 26. Marreiros J. M., Gibajo Bao J. F., Bicho N. F. Use-wear and residue analysis in archaeology. Springer International Publishing Switzerland, 2015. 223 p. http://dx.doi. org/10.1007/978-3-319-08257-8_1 g _ 27. Elliott B. Antlerworking practices in Mesolithic Britain. PhD thesis, University of York, 2012. 28. Pelletier M., Kotiaho A., Niinimäki S., Salmi A.K. Identifying early stages of rein- deer domestication in the archaeological record: a 3D morphological investigation on fore- limb bones of modern populations from Fennoscandia // Archaeological and Anthropological Sciences. Vol. 12, 169. 2020. pp. 1-25. https://link.springer.com/article/10.1007/s12520-020- 01123-0 29. Pétillon J.-M., Ducasse S. From fl akes to grooves: A technical shift in antlerworking during the last glacial maximum in southwest France// Journal of Human Evolution. Elsevier, 2012. pp. 1 – 31. http://dx.doi.org/10.1016/j.jhevol.2011.12.005 29. Pétillon J.-M., Ducasse S. From fl akes to grooves: A technical shift in antlerworking during the last glacial maximum in southwest France// Journal of Human Evolution. Elsevier, 2012. pp. 1 – 31. http://dx.doi.org/10.1016/j.jhevol.2011.12.005 pp p g j j 30. Loowe Kooijmans L.P., Gijn A.L. van, Oversteegen J. F. S., Bruineberg M. Artefac- ten van been, gewei en tand. L. P. Louwe Kooijmans (ed.), 2001. pp. 327–367. pp p g j j 30. Loowe Kooijmans L.P., Gijn A.L. van, Oversteegen J. F. S., Bruineberg M. Artefac- ten van been, gewei en tand. L. P. Louwe Kooijmans (ed.), 2001. pp. 327–367. Информация об авторах: Малютина Анна Андреевна, научный сотрудник. Институт истории материаль- ной культуры РАН г. Санкт-Петербург, Россия); kostylanya@yandex.ru Малютина Анна Андреевна, научный сотрудник. Институт истории материаль- ной культуры РАН г. Санкт-Петербург, Россия); kostylanya@yandex.ru Малютина Анна Андреевна, научный сотрудник. Институт истории материаль- ной культуры РАН г. Санкт-Петербург, Россия); kostylanya@yandex.ru у ур р ур , ); y y @y Мурашкин Антон Игоревич, младший научный сотрудник. Институт истории ма- ериальной культуры РАН (г. Санкт-Петербург, Россия); aimurash@yandex.ru у ур р ур , ); y y @y Мурашкин Антон Игоревич, младший научный сотрудник. Институт истории ма териальной культуры РАН (г. Санкт-Петербург, Россия); aimurash@yandex.ru р у ур ( р ур ) @y Такташева Снежана Дмитриевна, студент. Санкт-Петербургский государствен- ный университет; и. о. младшего научного сотрудника. Институт истории материаль- ной культуры РАН г. Санкт-Петербург, Россия); sn.taktasheva@gmail.com р у ур ( р ур ) @y Такташева Снежана Дмитриевна, студент. Санкт-Петербургский государствен- ный университет; и. о. младшего научного сотрудника. Институт истории материаль- ной культуры РАН г. Санкт-Петербург, Россия); sn.taktasheva@gmail.com р у ур ( р ур ) @y Такташева Снежана Дмитриевна, студент. Санкт-Петербургский государствен- ный университет; и. о. младшего научного сотрудника. Институт истории материаль- ной культуры РАН г. Санкт-Петербург, Россия); sn.taktasheva@gmail.com REFERENCES 1. Akaevskii, A. I. 1939. Anatomiya severnogo olenya (Anatomy of the reindeer). Leningrad: “Glavsevmorput'” Publ. (in Russian). 2. Girya, E. Yu. 2019. In Pogodin, A. A., Trufanov, A. Ya. (eds.). Poselenie Lem'ya 19.1 v verkhov'yakh Kondy: ot neolita do srednevekov'ya. Kollektivnaya monografi ya (Lemya 19.1 settlement in the Upper Konda River: from the Neolithic to the Middle Ages). Ekaterinburg: “Al'fa-Print” Publ., 67–117 (in Russian). ( ) 3. Gurina, N. N. 1997. Istoriya kul'tury drevnego naseleniya Kol'skogo poluostrova (History of culture of the Kola Peninsula ancient population). Saint-Petersburg: “Peterburgskoe Vostokovedenie” Publ. (in Russian). ( ) 4. Gusev, A. V., Plekhanov, A. V., Fedorova, N. V. 2016. In Tupakhin, D. S., Fedorova, N. V. (eds.). Arkheologiya Arktiki (Arctic Archaeology) 3. Kaliningrad: “ROS-DOAFK” Publ., 228–239 (in Russian). ) 5. Zhilin, M. G. 2010. In Vorob'ev, V. M. (ed.). Voprosy arkheologii i istorii kamennogo veka (Issues of Stone Age archaeology and history). Tver': “Sed'maya bukva” Publ., 96–104 (in Russian). 6 Ki l A M M hki A I 2019 I V b A A D lb E V K l k E M 6. Kiseleva, A. M., Murashkin, A. I. 2019. In Vybornov, A. A., Dolbunova, E. V., Kolpakov, E. M., Tkach, E. S. (eds.). Evolyutsiya neoliticheskikh kul'tur Vostochnoy Evropy. (Evolution of Neolithic Cul- tures of the Eastern Europe). Saint Petersburg: Institute for the History of Material Culture, Russian Academy of Sciences; State Hermitage, Samara: Samara State Pedagogical University, 37–39 (in Rus- sian). ) 7. Kolpakov, E. M., Murashkin, A. I., Khartanovich, V. I., Shumkin V.Ya. 2019. Kol'skiy Oleneostrovskiy mogil'nik: 1925–2013 (Kola Oleneostrovsky cemetery: 1925–2013). Saint-Petersburg, Vologda: “Drevnosti Severa” Publ. (in Russian). 8. Korobkova, G. F., Shchelinsky, V. E. 1996. Metodika mikro-makroanaliza drevnikh orudii truda (Methodology of Micro- and Macroanalysis of Prehistoric Implements) 1. Saint Petersburg: Institute for the History of Material Culture, Russian Academy of Sciences (in Russian). 9. Malyutina, A. A. 2019. In Kolpakov, E. M., Murashkin, A. I., Khartanovich, V. I., Shumkin V. Ya. Kol'skiy Oleneostrovskiy mogil'nik: 1925–2013 (Kola Oleneostrovsky cemetery: 1925–2013). Saint-Petersburg, Vologda: “Drevnosti Severa” Publ., 436–459 (in Russian). g, g , ( ) 10. Malyutina, A. A., Murashkin, A. I. 2022. In Fedorova, N. V., Gusev, A. V. (eds.). Arkheologiya Arktiki (Arctic Archaeology). Salekhard: “Nauka” Publ., 102–104 (in Russian). 11. Murashkin, A. I. 2022. In Zhul'nikov, A. M., Otlivanchik, M. P., Sviderskaya, E. V. (eds.). Prestizhnaya ekonomika pervobytnykh lyudey (Prestige economy of primitive people). A.A. Malyutina, A.I. Murashkin, S.D. Taktasheva A.A. Malyutina, A.I. Murashkin, S.D. Taktasheva The article presents the preliminary results of the traceological analysis of the artefacts made of reindeer antler (Rangifer tarandus) found at the settlement Mayak 2 (Murmansk region). The site, excavated in 1979–1984 by N. N. Gurina, has been dated to the Neolithic – Bronze Age. The unique collection includes more than 1800 various implements made of hard organic materials. The study of methods of reindeer’s antlers processing according to the data of macro- and microscopic analysis of technological traces was carried out for the fi rst time. Among the 250 artefacts selected for the study were The research was carried out with the support of a grant from the Russian Science Foundation, project No. 23-28-00543: “Traditions of bone-cutting production in the Arctic zone of Fennoscandia in the Neolithic and Bronze Age”. 216 Малютина А.А., Мурашкин А.И., Такташева С.Д. production waste, preforms and completed items. It was obtained that two technological methods of the antler`s fragmentation to create a preform were used. The fi rst method involved longitudinal and transverse chopping of the antler, which could be made with stone or metal tools. The second method based on carving of longitudinal and transverse grooves with subsequent division along them. It was found that the basal part of the antler was not actually used (one case was found). The medial part – the rod – were used for creating of the vast majority of implements and ornaments. Antler tines were rarely used for a limited set of items. Keywords: archaeology, Arctic, Fennoscandia, Mayak 2, Neolithic, Bronze Age, reindeer antler, traceology, technology, traces of working, technological chains, traditions, techniques. ПОВОЛЖСКАЯ АРХЕОЛОГИЯ S., Bruineberg, M. 2001 In Louwe Kooijmans, L. P. (ed.). Artefacten van been, gewei en tand, 327–367. ПОВОЛЖСКАЯ АРХЕОЛОГИЯ ПОВОЛЖСКАЯ АРХЕОЛОГИЯ № 3 (45) 2023 18. Bergsvik, K. A., David, É. 2015. In European Journal of Archaeology 18 (2), 190–221. É g p f gy ( ) 19. David, É., Sørensen, M. 2016. In Quaternary International 423, 123–142. Q y 20. Grøn, O. 2011. In Quaternary International 238, 76–82. og, K. 2011. In Quaternary International 238, 25–3 21. Helskog, K. 2011. In Quaternary International 238, 25–34. 22 H l k K I d lid S 2011 I Q I i l 238 1 3 21. Helskog, K. 2011. In Quaternary International 238, 25–34. 22 Helskog K Indrelid S 2011 In Quaternary International 238 1 3 21. Helskog, K. 2011. In Quaternary International 238, 25 34. 22. Helskog, K., Indrelid, S. 2011. In Quaternary International 238, 1–3. 22. Helskog, K., Indrelid, S. 2011. In Quaternary International 238, 1–3. 23. Hillson, S. 1999. Mammal bones and teeth. An introductory guide to methods of identifi ca tion. London. 24. Klokkernes, T. 2007. Skin processing technology in Eurasian Reindeer cultures. A compara- tive study in material science of Sàmi and Evenk methods – perspectives on deterioration and pres- ervation of museum artefacts. PhD thesis. The Royal Danish Academy of Fine Arts. The School of Conservation. Museum of cultural history University of Oslo. y y 25. Maigrot, Y. 2003. Etude technologique et fonctionnelle de l’outillage en matières dures ani- males, la station 4 de Chalain (Néolithique fi nal, Jura, France). PhD thesis. University of Paris I. Paris. 26 Marreiros J M Gibajo Bao J F Bicho N F 2015 Use-wear and residue analysis in ar- y y 25. Maigrot, Y. 2003. Etude technologique et fonctionnelle de l’outillage en matières dures ani- males, la station 4 de Chalain (Néolithique fi nal, Jura, France). PhD thesis. University of Paris I. Paris. 26. Marreiros, J. M., Gibajo Bao, J. F., Bicho, N. F. 2015. Use-wear and residue analysis in ar- chaeology. Springer International Publishing Switzerland. gy p g g 27. Elliott, B. 2012 Antlerworking practices in Mesolithic Britain. PhD Thesis. University of York. 28. Pelletier, M., Kotiaho, A., Niinimäki, S., Salmi, A.K. 2020. In Archaeological and Anthropo logical Sciences 12 (169), 1–25. logical Sciences 12 (169), 1–25. 29 Pétillon J M Ducasse S 2012 In Journal of Human Evolution Elsevier 1 31 29. Pétillon, J.-M., Ducasse, S. 2012. In Journal of Human Evolution. Elsevier, 1–31. 30. Loowe Kooijmans, L. P., Gijn, A. L. van, Oversteegen, J. F. REFERENCES Petrozavodsk: Petrozavodsk State University Publ., 155–175 (in Russian). y ( ) 12. Murashkin, A. I., Karpelan, K. 2013. In Cherlenok, E. A. (ed.). Problemy periodizatsii i khronologii v arkheologii epokhi rannego metalla Vostochnoy Evropy (Issues of Periodization and Chronology in the Archaeology of the Early Metal Period of Eastern Europe). Saint Petersburg: “Skifi ya-print” Publ., 200–207 (in Russian). y p ( ) 13. Murashkin, A. I., Malyutina, A. A., Kiseleva, A. M. 2019. In Lapshin, V. A. (ed.). Zapiski Instituta istorii material'noi kul'tury (Transactions of the Institute for the History of Material Culture) (20). Saint Petersburg: Institute for the History of Material Culture, Russian Academy of Sciences Publ., 85–103 (in Russian). ( ) 14. Poplevko, G. N. 2007. In Shayakhmetova, L. G. (ed.). Kol'skiy sbornik (Kola Collection). Saint Petersburg: Institute for the History of Material Culture, Russian Academy of Sciences Publ., 221–227 (in Russian). 15. Semenov, S. A. 1957. Pervobytnaia tekhnika (Primeval Technics). Series: Materialy i issledovaniia po arkheologii SSSR (Materials and Studies in the Archaeology of the USSR). Moscow; Leningrad: Academy of Sciences of the USSR (in Russian). g y ( ) 16. Shumkin, V. Ya. 1984. Kamennaya i kostyanaya industrii mezolita – rannego metalla Kol'skogo poluostrova (Stone and bone industries of the Mesolithic – Early Metal Age of the Kola peninsula). PhD. Diss. Leningrad (in Russian). p ) g ( ) 17. Berg, M., Wallen, H., Salmi, A. K. 2023. In Archaeological and Anthropological Sciences 15 (3), 1–38. 217 Статья принята в номер 01.09.2023 г. Статья принята в номер 01.09.2023 г. About the Authors: Malyutina Anna A. Institute for the History of Material Culture, Russian Academy of Science Dvortsovaya emb., 18, St.-Petersburg, 191186, Russian Federation; kostylanya@yandex.ru Murashkin Anton I. Institute for the History of Material Culture, Russian Academy of Sciences. Dvortsovaya emb., 18, St.-Petersburg, 191186, Russian Federation; aimurash@yandex.ru Taktasheva Snezhana D. St.Petersburg State University, Mendeleyevskaya linia, 5, Saint Petersburg, 199034, Russian Federation; Institute for the History of Material Culture, Russian Academy of Sciences. Dvortsovaya emb., 18, St.-Petersburg, 191186, Russian Federation; sn.taktasheva@gmail.com Статья принята в номер 01.09.2023 г. 218
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Systemic anaplastic large cell lymphoma presenting as a huge mediastinal mass in a case of hyper IgE syndrome: a case report
The Egyptian Journal of Radiology and Nuclear Medicine /The Egyptian Journal of Radiology and Nuclear Medicine
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* Correspondence: m.aghazadeh75@yahoo.com †Atefeh Kheyrollahiyan and Akbar Sharifi contributed equally to the study. 3Medical Radiation Sciences Research Group, Faculty of Medicine, Tabriz University of Medical Sciences, Tabriz, Iran 4Aging Research Institute, Tabriz University of Medical Sciences, Tabriz, Iran Full list of author information is available at the end of the article CASE REPORT Open Access Open Access © The Author(s). 2019 Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. Background abnormal differentiation of B lymphocytes [2]. Because of the latter, patients suffering from hyper IgE syndrome are prone to aggressive lymphomas. In this case report, we present a patient with documented hyper IgE syn- drome who suffered from recurrent infections in the re- spiratory tract and the skin, and had been diagnosed and was being treated for tuberculosis. This patient devel- oped an anaplastic lymphoma during follow-up, which presented as a huge mediastinal mass. Hyper immunoglobulinemia E (IgE) syndrome is a het- erogeneous group of disorders characterized by immune dysregulation. Davis et al. [1] reported the first case of hyper IgE syndrome in 1966, in two girls with chronic dermatitis and cold abscesses, and named the condition “Job’s syndrome.” Later, it was discovered that indeed Job’s syndrome was a subtype of hyper IgE syndrome, with an autosomal dominant form of transmission. To some extent, all forms of hyper IgE syndrome present with findings such as chronic dermatitis, recurrent cuta- neous infections, chronic sinusitis, pneumatoceles, atopy, and increased rate of certain malignancies, most notably lymphomas. Immunologically, this condition is accom- panied by reduced IL-22, IL-21, IL-11, IL-10, and IL-17 signaling; reduced chemotaxis of neutrophils; and Systemic anaplastic large cell lymphoma presenting as a huge mediastinal mass in a case of hyper IgE syndrome: a case report Atefeh Kheyrollahiyan1†, Akbar Sharifi2† and Mohammad Mirza-Aghazadeh-Attari3,4* Egyptian Journal of Radiology and Nuclear Medicine Egyptian Journal of Radiology and Nuclear Medicine Kheyrollahiyan et al. Egyptian Journal of Radiology and Nuclear Medicine (2019) 50:36 Kheyrollahiyan et al. Egyptian Journal of Radiology and Nuclear Medicine (2019) 50:36 https://doi.org/10.1186/s43055-019-0047-2 https://doi.org/10.1186/s43055-019-0047-2 Abstract Background: Hyper IgE syndrome is a rare heterogeneous immunodeficiency syndrome which is characterized by recurrent episodes of cutaneous and respiratory tract infections and development of cold abscesses. This syndrome is also associated with malignancies, most notability hematologic malignancies. Case presentation: In this case report, we discuss a 27-year-old male with proven hyper IgE syndrome and effected by tuberculosis, who developed an anaplastic large cell lymphoma, a very rare and aggressive subtype of lymphoma. We will discuss imaging findings in this rare case. The case presented here had a large mediastinal mass, which had encircled the aorta, and was accompanied by subcarinal lymphadenopathy and inguinal lymphadenopathy. Conclusions: Systemic anaplastic large cell lymphoma is a rare subtype of lymphoma which is rarely associated with hyper IgE syndrome. In this case, both lymphoma and tuberculosis infection were witnessed in the same patient, showing a classic example of immune dysregulation. Keywords: CT scan, Hyper IgE syndrome, Lymphoma, Anaplastic large cell lymphoma, Tuberculosis g y reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. © The Author(s). 2019 Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link h l d d f h d © The Author(s). 2019 Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and Case presentation A 27-year-old male presented with a chief complaint of cough exacerbation within the previous month. He was a known case of hyper IgE Syndrome for 17 years with a history of recurrent pneumonia, chronic si- nusitis, skin rashes, nail infections, coarse texture of the skin, and delayed dental shedding. He had a family history of a similar condition in his elder brother and sister, causing an early death in both siblings because of sepsis. The medical records of both siblings were unfortunately not available, but genetic Page 2 of 5 Kheyrollahiyan et al. Egyptian Journal of Radiology and Nuclear Medicine (2019) 50:36 Fig. 1 Two chest X-rays of the patient taken 1 year apart. a The chest X-ray taken when the patient was diagnosed with tuberculosis. b The chest X-ray taken when the patient had exacerbated symptoms after 1 year. A giant mass is seen in the mediastinum, which was not present before. The asterisk marks the described lesion Fig. 1 Two chest X-rays of the patient taken 1 year apart. a The chest X-ray taken when the patient was diagnosed with tuberculosis. b The chest X-ray taken when the patient had exacerbated symptoms after 1 year. A giant mass is seen in the mediastinum, which was not present before. The asterisk marks the described lesion analysis of the patient had revealed a mutation in the STAT3 gene. received the classic TB treatment, comprising of rifam- pin, isoniazid, ethambutol, and pyrazinamide (10–15 mg/ kg of each medication). From childhood, as the disease had begun, the patient experienced recurrent episodes of respiratory tract infec- tions and rashes on the skin. The lesions were superin- fected, and the patient was on medication with anti- staphylococcus agents, which had resulted in moderation of the skin lesions. Two months after starting the anti-TB medications, due to high liver functional enzymes (SGOT = 89 to > 77 to > 135, SGPT = 99 to > 101 to > 77) and a high ALK.P (4847 to > 4175 to > 991) in a number of lab tests, all TB medications were halted and the patient underwent further evaluation. He underwent abdominal and pelvic CT scan which showed an enlarged liver (liver span in longest dimen- sion equaled 20 cm) with 2 hypodense masses with a maximum diameter of 17 mm. Case presentation Numerous large hypo- dense masses in both inguinal regions suggestive of lymphadenopathy and a mass-like lesion with a diameter of 41 × 77 mm in LLQ were found. The patient chose He had lost light perception in his right eye when he was 12 years old due to cutaneous lesions and their superimposed infections. A year ago, he was admitted to a pulmonary subspe- cialty ward because of pneumonia (with fever and chills, productive coughs, and yellow-brown sputum), was diag- nosed with tuberculosis during clinical examination, and Fig. 2 CT scan of the lungs and mediastinum with and without contrast. a An enlarged mass exists in the mediastinum. b Venous phase of CT with contrast shows that the aortic arch is encased by a mass which is not enhanced Fig. 2 CT scan of the lungs and mediastinum with and without contrast. a An enlarged mass exists in the mediastinum. b Venous phase of CT with contrast shows that the aortic arch is encased by a mass which is not enhanced Kheyrollahiyan et al. Egyptian Journal of Radiology and Nuclear Medicine (2019) 50:36 Page 3 of 5 Fig. 3 Subcarinal lymphadenopathy detected by CT with venous contrast. The lymphadenopathy is shown by the asterisk Fig. 3 Subcarinal lymphadenopathy detected by CT with venous contrast. The lymphadenopathy is shown by the asterisk not to continue further evaluations and left the hospital on personal demand. lymphadenopathy. Numerous nodules with a maximum diameter of about 17 mm were also seen in both lungs. A mosaic pattern with ground glass opacification and an increase in intralobular septum thickness were observed. A consultation with a clinical oncologist suggested bi- opsy of the lesions. Imaging findings of the patient are presented in Figs. 1, 2, 3, 4, 5, and 6. Twenty days prior to the last admission, the patient was admitted to the hospital because of cough exacerba- tion, fever, and chills. Reduced lung sounds and fine crackles were auscultated in both lung bases, and the liver was 5 cm below the rib cage. g Bronchial biopsy and washing were not diagnostic; therefore, open lung biopsy was performed after con- sultation with the thoracic surgery specialists and im- munohistochemical analysis of the specimen showed strong immune reactivity of all large neoplastic cells for CD30 and their negative reaction for CD3, CD15, CD20, CD45, CK, S100, and vimentin. Case presentation Numerous re- active CD20+ CD45+ B cells and many reactive CD3+ CD45+ T cells were also seen, which overall were in favor of anaplastic large cell lymphoma. Fur- ther examination revealed a positive Ki-1 marker. Further consultation with the oncology department resulted in the patient being treated with the CHOP regimen (cyclophosphamide, doxorubicin, vincristine, and prednisone). The patient was under treatment with this regimen for 2 months and was being consid- ered to undergo treatment with brentuximab vedotin, until an episode of neutropenic fever caused the pa- tient to be hospitalized in the ICU ward. The patient deteriorated swiftly and died within the first week of ICU hospitalization. He received antibiotics and supportive treatment for pulmonary infection and underwent chest radiography, which showed a huge mass in the left thoracic cavity, just above the heart. Because of this, the patient had a CT scan with intravenous contrast, which showed an in- filtrative large mass of 60 × 78 mm in the left para- mediastinum with aortic encasement and subcarinal Fig. 4 Triple-contrast CT scan of the abdomen. Low attenuated lesions are seen in the liver (arrows) Discussion In this article, we report a case of hyper IgE syn- drome with typical dermatologic manifestations which was complicated by both a tuberculosis infection and an anaplastic large cell lymphoma. The first paramed- ical findings leading us to the diagnosis of lymphoma were a large mass in both chest X-rays and lung CT Fig. 4 Triple-contrast CT scan of the abdomen. Low attenuated lesions are seen in the liver (arrows) Page 4 of 5 Kheyrollahiyan et al. Egyptian Journal of Radiology and Nuclear Medicine (2019) 50:36 Another form of hyper IgE syndrome is the autosomal recessive subtype, which is caused by a deficiency in dedicator of cytokinesis 8 (DOCK8), a molecule involved in the regulation of actin, and possibly a tumor suppres- sor. Clinically, this subtype is not associated with con- nective tissue diseases, while it is mostly associated with neurologic symptoms, mucocutaneous viral infections and asthma, and food allergies, unlike the autosomal dominant type [5, 6]. Fig. 5 Bilateral inguinal lymphadenopathy showed by the arrows yp Although these two subtypes have different clinical manifestations and pathophysiological processes, they are both associated with malignancies, including lymphomas. A number of case reports have shed light on patients with hyper IgE syndrome who have been diagnosed with lymphomas. These reports have found that most patients have suffered of either dif- fuse large B cell lymphomas, T cell lymphomas, Bur- kitt lymphomas, Mantle cell lymphoma, Hodgkin’s lymphoma, or rare cases of extranodal NK/T lymph- omas [7]. In this case report, we present a patient with a history of hyper IgE syndrome who was diag- nosed with anaplastic large cell lymphoma, a very rare finding, of which only one has been reported so far [8], and in a rather young age (27 years old). This subtype of lymphoma is characterized by the pres- ence of CD30 and Ki-1 tumor markers and is associ- ated with cutaneous involvement, involvement of the skeletal system, spleen, liver, and soft tissues. The pathophysiology of this rare subtype of lymphoma is associated with the activation of anaplastic lymph- oma kinase, a receptor tyrosine kinase in the insulin receptor superfamily [9]. Of interest, in vivo studies have suggested that there may be a link between an- aplastic lymphoma kinase activation and STAT3, and the combined function of these two molecules may protect hematopoietic cells from apoptosis [10]. scans, which had encircled the aorta. References We present a rare case of anaplastic large cell lymphoma in a young male patient who had previous infection with tuberculosis. Imaging in this patient unraveled a large mass in the mediastinum, which had encased the aorta. Further imaging showed nu- merous lymphadenopathies in the subcarinal and in- guinal region. Open lung biopsy was done to attain a specimen for further analysis. IHC showed positive staining for CD30, and the diagnosis was made. This case report illustrates the duality of immune system dysfunction in individuals affected by hyper IgE syn- drome. It is important for clinicians to address this duality in clinical practice and anticipate conditions resulting from defective immune system and also un- controllable activation of the immune system. 1. Davis S, Schaller J, Wedgwood R, Harvard M (1966) Job’s syndrome: recurrent, “cold”, staphylococcal abscesses. Lancet. 287(7445):1013–1015 2. Mogensen TH (2013) STAT3 and the hyper-IgE syndrome: clinical presentation, genetic origin, pathogenesis, novel findings and remaining uncertainties. Jak-Stat. 2(2):e23435 uncertainties. Jak Stat. 2(2):e23435 3. Freeman AF, Holland SM (2008) The hyper-IgE syndromes. Immunol Allerg Clin North Am 28(2):277–291 4. Freeman AF, Holland SM (2010) Clinical manifestations of hyper IgE syndromes. Disease markers. 29(3, 4):123–130 5. Liza M, Gaurav D, Prasenjeet M, Swapna J, Binodini B (2018) Autosomal- recessive hyper-IgE syndrome. Indian J Dermatol 63(1):79 6. Chu EY, Freeman AF, Jing H, Cowen EW, Davis J, Su HC et al (2012) Cutaneous manifestations of DOCK8 deficiency syndrome. Archives of dermatology 148(1):79 84 3. Freeman AF, Holland SM (2008) The hyper-IgE syndromes. Immunol Allergy Clin North Am 28(2):277–291 4. Freeman AF, Holland SM (2010) Clinical manifestations of hyper IgE syndromes. Disease markers. 29(3, 4):123–130 5. Liza M, Gaurav D, Prasenjeet M, Swapna J, Binodini B (2018) Autosomal- recessive hyper-IgE syndrome. Indian J Dermatol 63(1):79 6. Chu EY, Freeman AF, Jing H, Cowen EW, Davis J, Su HC et al (2012) Cutaneous manifestations of DOCK8 deficiency syndrome. Archives of dermatology. 148(1):79–84 7. Kumánovics A, Perkins SL, Gilbert H, Cessna MH, Augustine NH, Hill HR (2010) Diffuse large B cell lymphoma in hyper-IgE syndrome due to STAT3 mutation. J Clin Immunol 30(6):886–893 8. Lee MW, Choi JH, Sung KJ, Moon KC, Koh JK (2003) Extensive xanthelasma associated with anaplastic large cell lymphoma and hyperimmunoglobulin E syndrome. Int J Dermatol 42(12):944–946 9. Acknowledgements We would like to thank Dr. Puri for his support in conducting this report. 11. Friedberg JW, Chengazi V (2003) PET scans in the staging of lymphoma: current status. Oncologist. 8(5):438–447 Ethics approval and consent to participate The present study was approved by the ethical board of the hospital in which the study was performed. The patient reported in this article had signed a written informed consent form. This case report was a reporting of a case in a medical educational center, in which all patients are informed that they may be subjects of scientific experiments and are informed of the ethical codes of conducts. This study was in compliance to the latest version of the Helsinki Declaration. g A general overview of previous case reports published in this regard reveals that CT scan has been the most utilized imaging method of lymphomas, and findings have in- cluded involvement of the parotid glands, spleen, and ab- dominal, mediastinal, and inguinal lymph nodes. Various studies have reported sizes up to 5 cm for individual masses, but larger ones are exceedingly rare. Positron emission tomography (PET) scan is also used in the detec- tion of lymphoma in hyper IgE patients. This modality could be of interest in patients who cannot routinely undergo imaging with contrast media used in CT and MRI or those who have lesions which are not suitable for obtaining a biopsy [11]. Received: 12 August 2019 Accepted: 6 September 2019 Received: 12 August 2019 Accepted: 6 September 2019 Received: 12 August 2019 Accepted: 6 September 2019 Publisher’s Note AK contributed to the data acquisition, manuscript preparation, and approval of the final version of the study. AS contributed to the oversight over the case report, data acquisition, and approval of the final version of the study. MMAA contributed to the manuscript preparation, revision of the manuscript and final edit, interpretation of imaging findings, and approval of the final version of the manuscript. Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations. Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations. Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations. References Webb TR, Slavish J, George RE, Look AT, Xue L, Jiang Q et al (2009) Anaplastic lymphoma kinase: role in cancer pathogenesis and small- molecule inhibitor development for therapy. Expert Rev Anticancer Ther 9(3):331–356 Author details 1 1Connective Tissue Diseases Research Center, Tabriz University of Medical Sciences, Tabriz, Iran. 2Tuberculosis and Lung Disease Research Center, Tabriz University of Medical Sciences, Tabriz, Iran. 3Medical Radiation Sciences Research Group, Faculty of Medicine, Tabriz University of Medical Sciences, Tabriz Iran 4Aging Research Institute Tabriz University of Medical Sciences Tabriz, Iran. 4Aging Research Institute, Tabriz University of Medical Sciences, Tabriz, Iran. Consent for publication The patient had written and signed an informed consent note that the findings may be published without any personal detail. Funding No one was paid during this study. The study did not have a source of funding. This study was not supported by a grant. Discussion Immunohisto- chemically, staining was done on a biopsy specimen of the lung, which yielded the definite diagnosis. Hyper IgE syndrome is associated with a dysfunc- tional immune response, which can present both as susceptibility to infectious agents and autoimmune diseases. Importantly, clinicians have observed that hyper IgE syndrome is associated with Hodgkin’s and non-Hodgkin’s lymphoma, especially the autosomal dominant subtype, which is associated with STAT3 deficiency [3]. Interestingly, both pro-inflammatory and anti-inflammatory responses are mediated through STAT3 signaling. Tangible evidence of this role is seen in hyper IgE syndrome, where both anti- and pro-inflammatory responses are dysfunctional [4]. Fig. 6 Coronal and axial cuts of the sinuses. Ostiomeatal complex pattern is seen, as both the ethmoidal, maxillary, and frontal sinuses are involved d axial cuts of the sinuses. Ostiomeatal complex pattern is seen, as both the ethmoidal, maxillary, and frontal sinuses Fig. 6 Coronal and axial cuts of the sinuses. Ostiomeatal complex pattern is seen, as both the ethmoidal, maxillary, and frontal sinuses are involved Page 5 of 5 Page 5 of 5 Kheyrollahiyan et al. Egyptian Journal of Radiology and Nuclear Medicine (2019) 50:36 Kheyrollahiyan et al. Egyptian Journal of Radiology and Nuclear Medicine This patient also used to suffer from tuberculosis, again a rather rare finding, as most patients with hyper IgE syndrome are complicated by gram- positive bacteria. Furthermore, our case was novel in regard to imaging findings, as no other case had pre- sented with a large mass in the mediastinum. Ethics approval and consent to participate Abbreviations l f d CD: Cluster of differentiation; CT scan: Computed tomography scan; Hyper IgE syndrome: Hyper immunoglobulin E syndrome; STAT3: Signal transducer and activator of transcription 3; TB: Tuberculosis 10. Zamo A, Chiarle R, Piva R, Howes J, Fan Y, Chilosi M et al (2002) Anaplastic lymphoma kinase (ALK) activates Stat3 and protects hematopoietic cells from cell death. Oncogene. 21(7):1038 Acknowledgements Acknowledgements We would like to thank Dr. Puri for his support in conducting this report. Competing interests Competing interests The authors declare that they have no competing interests. Availability of data and materials Availability of data and materials All data is available based on a reasonable request. All data is available based on a reasonable request.
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Concerted Up-regulation of Aldehyde/Alcohol Dehydrogenase (ADHE) and Starch in Chlamydomonas reinhardtii Increases Survival under Dark Anoxia
Journal of biological chemistry/˜The œJournal of biological chemistry
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Edited by Joseph Jez Aldehyde/alcohol dehydrogenases (ADHEs) are bifunctional enzymes that commonly produce ethanol from acetyl-CoA with acetaldehyde as intermediate and play a key role in anaerobic redox balance in many fermenting bacteria. ADHEs are also present in photosynthetic unicellular eukaryotes, where their physiological role and regulation are, however, largely un- known. Herein we provide the first molecular and enzymat- ic characterization of the ADHE from the photosynthetic microalga Chlamydomonas reinhardtii. Purified recombinant ADHE catalyzed the reversible NADH-mediated interconver- sions of acetyl-CoA, acetaldehyde, and ethanol but seemed to be poised toward the production of ethanol from acetaldehyde. Phylogenetic analysis of the algal fermentative enzyme supports a vertical inheritance from a cyanobacterial-related ancestor. ADHE was located in the chloroplast, where it associated in dimers and higher order oligomers. Electron microscopy analy- sis of ADHE-enriched stromal fractions revealed fine spiral structures, similar to bacterial ADHE spirosomes. Protein blots showed that ADHE is regulated under oxic conditions. Up-reg- ulation is observed in cells exposed to diverse physiological stresses, including zinc deficiency, nitrogen starvation, and inhibition of carbon concentration/fixation capacity. Analyses of the overall proteome and fermentation profiles revealed that cells with increased ADHE abundance exhibit better survival under dark anoxia. This likely relates to the fact that greater ADHE abundance appeared to coincide with enhanced starch accumulation, which might reflect ADHE-mediated anticipa- tion of anaerobic survival. tion is paid to energy generation in conditions of dark anoxia. The study of the anaerobic heterotrophic metabolism of both microalgae and cyanobacteria is, however, highly relevant because these organisms regularly face conditions of dark anoxia in their natural habitats, especially in eutrophized and/or polluted waters. To meet the energy demand for life or cell maintenance in these specific conditions, photosynthetic cells carry out fermentation at the expense of endogenous car- bohydrates (glycogen or starch). Anaerobic respiration has also been reported, i.e. sulfur respiration in cyanobacterial species such as Oscillatoria limnetica and Microcoleus chthonoplastes (1, 2), and fumarate respiration in Euglena gracilis (3, 4). g g In cyanobacteria, the fermentation routes are diverse and include homofermentation (lactate or acetate), heterofermen- tation, and mixed acid fermentation (5). Among microalgae, fermentative metabolism has been investigated mainly in chlo- rophytes. It is known for some time that in absence of oxygen, green algae such as Chlamydomonas and Chlorella have the ability to produce organic acids (acetate, formate, lactate, and succinate), alcohols (ethanol), and gases (CO2 and H2) (6–9). 2 The abbreviations used are: PDC, pyruvate decarboxylase; ADHE, aldehyde/ alcohol dehydrogenase; ADH, alcohol dehydrogenase; PFL, pyruvate for- mate lyase; PFO, pyruvate:ferredoxin oxidoreductase; RBCL, large subunit of the Rubisco; SAR, Stramenopiles-Alveolata-Rhizaria; LHC, light-harvest- ing complex protein; BN, Blue Native; ALDH, aldehyde dehydrogenase; PTA, phosphotransacetylase; ACK, acetate kinase; HP, hypophosphite; CBB, Calvin-Benson-Bassham; ADPG, ADP-glucose pyrophosphorylase; CCM, carbon-concentrating mechanism; Rubisco, ribulose-bisphos- phate carboxylase/oxygenase; TAP, Tris-acetate-phosphate; AIB, anaer- obic induction buffer. * This work was supported by the Centre National de la Recherche Scienti- fique and partly supported by Agence Nationale pour la Recherche Grant ANR-10-BIOE-0004 (to A. A., R. V. L., and M. P.), and ProFi Infrastructure Grant ANR-10-INBS-08-01 (to Y. C.). The authors declare that they have no conflicts of interest with the contents of this article. □ ssmark ssmark THE JOURNAL OF BIOLOGICAL CHEMISTRY VOL. 292, NO. 6, pp. 2395–2410, February 10, 2017 © 2017 by The American Society for Biochemistry and Molecular Biology, Inc. Published in the U.S.A. THE JOURNAL OF BIOLOGICAL CHEMISTRY VOL. 292, NO. 6, pp. 2395–2410, February 10, 2017 © 2017 by The American Society for Biochemistry and Molecular Biology, Inc. Published in the U.S.A. Concerted Up-regulation of Aldehyde/Alcohol Dehydrogenase (ADHE) and Starch in Chlamydomonas reinhardtii Increases Survival under Dark Anoxia*□ S Robert van Lis‡§, Marion Popek‡, Yohann Couté¶**, Artemis Kosta‡‡, Dominique Drap and Ariane Atteia‡1 From the ‡Aix Marseille Université, CNRS, BIP-UMR 7281, 13402 Marseille, France, §LBE, INRA, 11100 Narbonne, France, the ¶Université Grenoble Alpes, BIG-BGE, 38000 Grenoble, France, the Commissariat à l’Energie Atomique, BIG-BGE, 38000 Grenoble, France, **INSERM, BGE, 38000 Grenoble, France, the ‡‡Microscopy Core Facility, FR3479 Institut de Microbiologie de la Méditerranée , 13402 Marseille cedex 20, France, and the §§Institut de Biologie Physico-Chimique, UMR7141 CNRS-UPMC, 75005 Paris, France pp g 1 To whom correspondence should be addressed: Aix Marseille Université, CNRS, Unité de Bioénergétique et Ingénierie des Protéines-UMR 7281, 31 Chemin Joseph Aiguier, 13402 Marseille, France. E-mail: ariane.atteia@ imm.cnrs.fr. □ S This article contains supplemental Figs. S1–S7 and Data Sets S1 and S2. * This work was supported by the Centre National de la Recherche Scienti- fique and partly supported by Agence Nationale pour la Recherche Grant ANR-10-BIOE-0004 (to A. A., R. V. L., and M. P.), and ProFi Infrastructure Grant ANR-10-INBS-08-01 (to Y. C.). The authors declare that they have no conflicts of interest with the contents of this article. □ S This article contains supplemental Figs. S1–S7 and Data Sets S1 and S2. 1 To whom correspondence should be addressed: Aix Marseille Université, CNRS, Unité de Bioénergétique et Ingénierie des Protéines-UMR 7281, 31 Chemin Joseph Aiguier, 13402 Marseille, France. E-mail: ariane.atteia@ imm.cnrs.fr. Edited by Joseph Jez The genome sequences of Chlamydomonas reinhardtii (10) and Chlorella variabilis NC64 (11) have greatly helped to get a good grasp of the anaerobic pathways in the two algae (12–14). Since then, in C. reinhardtii, these pathways have been actively investigated through molecular and biochemical studies of the fermentative enzymes (15–19), as well as physiological studies of mutant strains (20–25). As we understand it, the “core” anaerobic network in the chlorophyte combines enzymes com- monly found in eukaryotes, i.e. pyruvate decarboxylase (PDC),2 alcohol dehydrogenases (ADHs), and lactate dehydrogenase, with enzymes that are typical for bacteria (referred to as bacte- Oxygenic photosynthetic microorganisms are typically asso- ciated with illuminated oxic environments, and so, little atten- FEBRUARY 10, 2017•VOLUME 292•NUMBER 6 2395 JOURNAL OF BIOLOGICAL CHEMISTRY FEBRUARY 10, 2017•VOLUME 292•NUMBER 6 Chloroplast Aldehyde/Alcohol Dehydrogenase FIGURE 1. Anerobic metabolic routes in C. reinhardtii. Under dark anoxia, starch is metabolized to pyruvate via glycolysis, thereby generating ATP and reducing power (NADH). The network shows a pyruvate branch point with four enzymes. Another branch point is acetyl-CoA that can be used to produce ethanol via ADHE or acetate via the PTA-ACK pathway. Network is simplified by the omission of the subcellular localization of the different enzymes. Fe and Zn indicate the metal in the active site of the alcohol dehydrogenases. To better understand the metabolic responses, the number of oxidizable electrons is indicated for each metabolite. The main fermentation route used by the alga incubated in AIB under dark anoxia is the “PFL-gated pathway,” which consists of PFL, ADHE, and PTA-ACK. Chloroplast Aldehyde/Alcohol Dehydrogenase FIGURE 1 Anerobic metabolic routes in C reinhardtii Under dark anoxia starch is metabolized to pyruvate via glycolysis thereby generati FIGURE 1. Anerobic metabolic routes in C. reinhardtii. Under dark anoxia, starch is metabolized to pyruvate via glycolysis, thereby generating ATP and reducing power (NADH). The network shows a pyruvate branch point with four enzymes. Another branch point is acetyl-CoA that can be used to produce ethanol via ADHE or acetate via the PTA-ACK pathway. Network is simplified by the omission of the subcellular localization of the different enzymes. Fe and Zn indicate the metal in the active site of the alcohol dehydrogenases. To better understand the metabolic responses, the number of oxidizable electrons is indicated for each metabolite. Edited by Joseph Jez ADHE is a mono-iron enzyme, which was found to be the major ethanol-producing enzyme in conditions of dark anoxia (22). Although it is now clear that the bacterial-type enzymes fully participate in the anaerobic life of C. reinhardtii, their physio- logical significance in the intricate anaerobic network (Fig. 1), as well as their regulation, remains largely enigmatic. Edited by Joseph Jez The main fermentation route used by the alga incubated in AIB under dark anoxia is the “PFL-gated pathway,” which consists of PFL, ADHE, and PTA-ACK. its evolutionary origin, subcellular localization, and enzymatic properties. We also followed ADHE abundance in different mutant strains and relevant physiological conditions. This is the first report on the factors that influence the ADHE abun- dance in C. reinhardtii and on the consequences of enhanced protein levels in fermentation behavior. rial-type enzymes), i.e. pyruvate formate lyase (PFL; EC 2.3.1.54), pyruvate:ferredoxin oxidoreductase (PFO or PFR; EC 1.2.7.1), iron-only hydrogenases, and aldehyde/alcohol dehy- drogenase (ADHE or ADH1) (Fig. 1). The presence of these bacterial-type enzymes raises questions about their evolution- ary origin and their integration in a mitochondriate eukaryote that we and others have tackled since their discovery. PFL and PFO were both shown to be functional in C. reinhardtii (16, 18, 19) and can, under anaerobic conditions, catalyze the produc- tion of acetyl-CoA from pyruvate. PFL accumulates under aer- obic conditions and is dually targeted to chloroplast and mito- chondria (12). PFO is expressed under anaerobic conditions and localizes to the chloroplast where it is coupled to H2 pro- duction by iron-only hydrogenases via FDX1 (PetF) (18, 19). ADHE is a mono-iron enzyme, which was found to be the major ethanol-producing enzyme in conditions of dark anoxia (22). Although it is now clear that the bacterial-type enzymes fully participate in the anaerobic life of C. reinhardtii, their physio- logical significance in the intricate anaerobic network (Fig. 1), as well as their regulation, remains largely enigmatic. rial-type enzymes), i.e. pyruvate formate lyase (PFL; EC 2.3.1.54), pyruvate:ferredoxin oxidoreductase (PFO or PFR; EC 1.2.7.1), iron-only hydrogenases, and aldehyde/alcohol dehy- drogenase (ADHE or ADH1) (Fig. 1). The presence of these bacterial-type enzymes raises questions about their evolution- ary origin and their integration in a mitochondriate eukaryote that we and others have tackled since their discovery. PFL and PFO were both shown to be functional in C. reinhardtii (16, 18, 19) and can, under anaerobic conditions, catalyze the produc- tion of acetyl-CoA from pyruvate. PFL accumulates under aer- obic conditions and is dually targeted to chloroplast and mito- chondria (12). PFO is expressed under anaerobic conditions and localizes to the chloroplast where it is coupled to H2 pro- duction by iron-only hydrogenases via FDX1 (PetF) (18, 19). TABLE 1 Entamoeba (Amoebozoa) (28, 29) and Giardia (Exca- vata) (30), was a motive to study in detail its biochemical char- acteristics and its regulation. To gain insights into the intraorganellar localization of the ADHE in C. reinhardtii, chloroplasts were broken by two freeze-thaw cycles and fractionated by low speed centrifuga- tion. In the resulting supernatant, which contains primarily stromal proteins (not shown), the ADHE was identified by mass spectrometry-based proteomic analysis with a coverage of more than 50% over the entire sequence (supplemental Fig. S3). g To study the oligomerization state of the native ADHE, the enzyme was further purified by anion exchange chromatogra- phy and affinity chromatography on Blue Sepharose resin. Assessment of the protein oligomerization was done by two- dimensional Blue Native (BN)/SDS-PAGE and immunoblot- ting. Protein blots showed that ADHE occurred in various com- plexes of similar abundance (Fig. 4B); the smallest complex of 180 kDa is likely a dimer, and the complex in the range of 400 kDa might represent a tetramer. PFL, present in the same stromal fraction, was found mainly as a monomer at 80-kDa and a dimer at 160 kDa (Fig. 4B). The various ADHE forms observed on BN-PAGE might be indicative of the protein tend- ency to aggregate. Alternatively, these different forms might indicate the progressive dissociation of large assemblies during purification and/or migration on the native gel. ADHE that was partially purified by anion exchange chromatography could be pelleted after ultracentrifugation, thus supporting the possibil- ity that this protein associates in large molecular assemblies (not shown). EM images of the resulting ADHE-containing pel- let revealed the presence of spiral-like filaments of an average length of 100 nm (Fig. 4C), morphologically indistinguishable from bacterial ADHE oligomers, also known as spirosomes (35–37). Attempts to obtain samples enriched in these fila- ments by either centrifugation on concentrating devices or Subcellular Localization and Oligomerization of C. rein- hardtii ADHE—Relative to bacterial ADHEs, the C. reinhardtii 954-amino acid protein exhibits an extended N terminus (60 residues) (Fig. 3A), which could serve as an intracellular target- ing signal to the chloroplast and/or the mitochondrion. The targeting of ADHE to the bioenergetic organelles was evaluated by protein blots using antibodies raised against a truncated form of the algal ADHE (tADHE, Val354–Pro703) (12). These antibodies recognize native ADHE with an apparent molecular mass of 100 kDa (Fig. 4A). TABLE 1 TABLE 1 Distribution of ADHE among the five eukaryotic supergroups defined by Adl et al. (26) Supergroup Species name Lifestyle Identitya Accession number Archaeplastida Chlorophytes C. reinhardtii Free-living photosythetic alga gi 92084840 Chlorophytes Volvox carteri Free-living photosythetic alga 84 gi 302853679 Chlorophytes C. variabilis Free-living photosythetic alga 68 gi 552841275 Amoebozoa Entamoebids Entamoeba histolytica Human pathogen (intestine) 47 gi 2492737 Pelobionts Mastigamoeba Free-living species 55 gi 21435953 Excavata Diplomonads Giardia intestinalis Human pathogen (intestine) 52 gi 2052472 Diplomonads Spironucleus barkhanus Fish pathogen 53 gi 27983190 Opisthokonta Fungi (chytrid) Neocallimastix frontalis Anaerobic rumen fungus 52 gi 387233067 Fungi (chytrid) Piromyces sp. E2 Anaerobic rumen fungus 52 gi 33578055 Fungi Togninia minima UCRPA7 Grapevine pathogen 47 gi 631237462 SAR Cryptophytes G. theta CCMP2712 Free-living photosythetic alga 47 gi 551672365 Cercozoa B. natans CCMP2755 Free-living photosythetic alga 43 jgi Bigna1 85335 Apicomplexa Cryptosporidium hominis TU502 Anaerobic pathogen 48 gi 67623585 a Amino acid identity with C. reinhardtii ADHE. Distribution of ADHE among the five eukaryotic supergroups defined by Adl et al. (26) chondria (Fig. 3A). Our result, obtained with cells grown under oxic conditions, thus corroborates proteomics data on organ- elles isolated from anaerobic cells (33). C. reinhardtii is the first organism for which an ADHE chloroplast location is found. Indeed, ADHE was so far described in the cytosol of parasites such as Piromyces and Giardia (4, 34) and in the mitochondria of the non-photosynthetic chlorophyte Polytomella (27). ADHE phylogenetic analysis that we present here includes a significantly larger set of bacterial sequences, as well as all eukaryotic sequences publicly available (supplemental Data Sets S1 and S2). The current analysis further substantiates the dichotomy of the bacterial ADHEs (clusters I and II) and the unclear rooting of most eukaryote proteins (Fig. 2). The ADHEs from the marine algae B. natans and G. theta are found in the undefined “eukaryotic” region of the tree, whereas the enzymes of C. reinhardtii and other chlorophytes are found in cluster I, where they branch with cyanobacterial ADHEs (Fig. 2). Our phylogenetic analysis thus suggests that (i) the origin of the chlorophyte enzymes is distinct from that of the other eukaryotic enzymes and (ii) the ADHE gene in green algae might have been inherited vertically from the cyanobacterial ancestor. The unique phylogenetic position of C.reinhardtii ADHE compared with that of the eukaryotic enzymes studied so far, i.e. Results Phylogenetic Analyses of C. reinhardtii ADHE—ADHE genes are present in the five eukaryotic supergroups described by Adl et al. (26), i.e. the Archaeplastida, Amoebozoa, Excavates, Opis- thokonta, and the Stramenopiles-Alveolata-Rhizaria (SAR) (Table 1). However, the gene remains poorly represented among eukaryotes, where it appears to be restricted to unicel- lular species, most of which are pathogenic anaerobes. The only free-living eukaryotes in which an ADHE gene has been found so far are microalgae. In addition to the chlorophytes C. rein- hardtii, Chlorella, and Polytomella (Archaeplastida), an ADHE gene is also present in two photosynthetic species of the SAR supergroup: the cryptophyte Guillardia theta and the chlora- rachniophyte Bigelowiella natans (14) (Table 1). To better understand the integration and the regulation of the ADHE in the context of a photosynthetic eukaryotic cell, we explored different aspects of C. reinhardtii ADHE, in particular Earlier phylogenies have shown most eukaryotic ADHEs wedged in between two clusters of bacterial enzymes (27). The VOLUME 292•NUMBER 6•FEBRUARY 10, 2017 2396 JOURNAL OF BIOLOGICAL CHEMISTRY 2396 VOLUME 292•NUMBER 6•FEBRUARY 10, 2017 Chloroplast Aldehyde/Alcohol Dehydrogenase TABLE 1 Photosynthetic eukaryotes are indicated in green and cya- nobacteria in blue. The list of species used in this analysis can be found in supplemental Data Set S1. Multiple sequence alignment is shown in supple- mental Data Set S2. p y y g FIGURE 2. Schematic phylogenetic tree of aldehyde/alcohol dehydroge- nases from bacterial and eukaryotic sources. The tree was constructed using the maximum likelihood algorithm. Eukaryotic supergroups are indi- cated in bold type. Photosynthetic eukaryotes are indicated in green and cya- nobacteria in blue. The list of species used in this analysis can be found in supplemental Data Set S1 Multiple sequence alignment is shown in supple- FIGURE 3. Structural and enzymatic characteristics of ADHE. A, the C. rein- hardtiienzymeconsistsofanN-terminalALDHdomain(cd07077)followedby a C-terminal ADH domain (cd08178). The catalytic Cys residue in the ALDH domain (Cys323) is indicated. Two signatures for iron-binding were identified in the ADH domain: ADH_iron_1 (residues 706–734) (Prosite PS00913) and ADH_iron_2 (residues 794–814) (Prosite PS00060). The position of the resi- dues potentially involved in iron coordination (Asp727, His731, His797, and His811) was inferred from the structure of the E. coli iron-dependent alcohol dehydrogenase FucO (69). Black boxes indicate NADH binding sites (Gly270– Gly291 and Glu599–Met622) based on (70). Compared with bacterial enzymes, the algal ADHE exhibits at its N terminus an extension (gray box), which likely serves for intracellular targeting. B, enzymatic activities catalyzed by ADHE. FIGURE 3 Structural and enzymatic characteristics of ADHE A the C rein- FIGURE 3. Structural and enzymatic characteristics of ADHE. A, the C. rein- hardtiienzymeconsistsofanN-terminalALDHdomain(cd07077)followedby FIGURE 3. Structural and enzymatic characteristics of ADHE. A, the C. rein- hardtiienzymeconsistsofanN-terminalALDHdomain(cd07077)followedby a C-terminal ADH domain (cd08178). The catalytic Cys residue in the ALDH domain (Cys323) is indicated. Two signatures for iron-binding were identified in the ADH domain: ADH_iron_1 (residues 706–734) (Prosite PS00913) and ADH_iron_2 (residues 794–814) (Prosite PS00060). The position of the resi- dues potentially involved in iron coordination (Asp727, His731, His797, and His811) was inferred from the structure of the E. coli iron-dependent alcohol dehydrogenase FucO (69). Black boxes indicate NADH binding sites (Gly270– Gly291 and Glu599–Met622) based on (70). Compared with bacterial enzymes, the algal ADHE exhibits at its N terminus an extension (gray box), which likely serves for intracellular targeting. B, enzymatic activities catalyzed by ADHE. TABLE 1 cally active complex of 180 kDa that runs in the same region as Saccharomyces cerevisiae tetrameric alcohol dehydrogenase ADH1 (Mr  160 kDa) is likely an ADHE dimer. Two-dimen- sional BN/SDS-PAGE confirmed that rADHE occurs in multi- ple oligomeric forms, like the native ADHE (Fig. 4B). However, in contrast to the native enzyme, the rADHE associates most predominantly into dimers (Fig. 5C). FIGURE 2. Schematic phylogenetic tree of aldehyde/alcohol dehydroge- nases from bacterial and eukaryotic sources. The tree was constructed using the maximum likelihood algorithm. Eukaryotic supergroups are indi- cated in bold type. Photosynthetic eukaryotes are indicated in green and cya- nobacteria in blue. The list of species used in this analysis can be found in supplemental Data Set S1. Multiple sequence alignment is shown in supple- mental Data Set S2. p y g Bifunctional aldehyde/alcohol dehydrogenases consist of a coenzyme A-dependent aldehyde dehydrogenase (ALDH) (EC 1.2.1.10) followed by an iron-containing ADH (EC 1.1.1.1) (Fig. 3A). ADHEs catalyze the two distinct activities that are typically reversible (30) (Fig. 3B). Here we first assessed the ability of the purified rADHE enzyme to catalyze each of the four different partial reactions. For the NADH-dependent acetyl-CoA and acetaldehyde reduction activities, the enzyme exhibited Vmax values of 1 and 4 units/mg, respectively (Table 2, reactions 1 and 2). Both reductive reactions show highest activities in the pH range of 6.0–7.0 (Table 2). Reductions of acetyl-CoA and acet- aldehyde appear specific for NADH, because the Vmax for NADPH was only 1–2% of that for NADH (not shown). The specific activities of NAD-dependent ethanol and acetalde- hyde oxidations were both found to be in the range of 1–1.5 units/mg (reactions 3 and 4) (Table 2). Overall, reaction 2 showed the highest activity, which may represent an adaptation to quickly remove acetaldehyde, a compound toxic for the cell. Also, from the fact that the Vmax of reaction 4 is much lower than that of reaction 2, it could be hypothesized that the enzyme is poised to function toward the production of ethanol and not vice versa, at least under the saturating conditions used for the measurements. Iron addition to rADHE exhibited a ammonium sulfate precipitation have failed, possibly because these structures are relatively fragile. Molecular Characterization and Kinetic Analysis of Recom- binant ADHE—Considering the low amounts of ADHE present in C. reinhardtii, even in strain 10-6C, we chose to study the recombinant enzyme. TABLE 1 To isolate chloroplasts and mito- chondria, we used mutant strain 10-6C, in which ADHE abun- dance was found to be 3–4-fold higher than in wild-type strain CC-124 (supplemental Fig. S1). Strain 10-6C is a photosyn- thetic mutant impaired in CO2 assimilation because of a point mutation in the RBCL gene (31, 32) (supplemental Fig. S2). The relative purity of the organelle fractions was evaluated with antibodies against the light harvesting complex proteins (LHCs) and subunit  of mitochondrial F0F1-ATPase (ATP2). Immunoblot analysis indicated that ADHE is present in the chloroplast fraction but not in the fraction enriched in mito- FEBRUARY 10, 2017•VOLUME 292•NUMBER 6 2397 JOURNAL OF BIOLOGICAL CHEMISTRY FEBRUARY 10, 2017•VOLUME 292•NUMBER 6 Chloroplast Aldehyde/Alcohol Dehydrogenase cally active complex of 180 kDa that runs in the same region as Saccharomyces cerevisiae tetrameric alcohol dehydrogenase ADH1 (Mr  160 kDa) is likely an ADHE dimer. Two-dimen- sional BN/SDS-PAGE confirmed that rADHE occurs in multi- ple oligomeric forms, like the native ADHE (Fig. 4B). However, in contrast to the native enzyme the rADHE associates most FIGURE 2. Schematic phylogenetic tree of aldehyde/alcohol dehydroge- nases from bacterial and eukaryotic sources. The tree was constructed using the maximum likelihood algorithm. Eukaryotic supergroups are indi- cated in bold type. Photosynthetic eukaryotes are indicated in green and cya- nobacteria in blue. The list of species used in this analysis can be found in supplemental Data Set S1. Multiple sequence alignment is shown in supple- FIGURE 3. Structural and enzymatic characteristics of ADHE. A, the C. rein- hardtiienzymeconsistsofanN-terminalALDHdomain(cd07077)followedby a C-terminal ADH domain (cd08178). The catalytic Cys residue in the ALDH domain (Cys323) is indicated. Two signatures for iron-binding were identified in the ADH domain: ADH_iron_1 (residues 706–734) (Prosite PS00913) and ADH_iron_2 (residues 794–814) (Prosite PS00060). The position of the resi- dues potentially involved in iron coordination (Asp727, His731, His797, and His811) was inferred from the structure of the E. coli iron-dependent alcohol dehydrogenase FucO (69). Black boxes indicate NADH binding sites (Gly270– Gly291 and Glu599–Met622) based on (70). Compared with bacterial enzymes, the algal ADHE exhibits at its N terminus an extension (gray box), which likely serves for intracellular targeting. B, enzymatic activities catalyzed by ADHE. Chloroplast Aldehyde/Alcohol Dehydrogenase FIGURE 2. Schematic phylogenetic tree of aldehyde/alcohol dehydroge- nases from bacterial and eukaryotic sources. The tree was constructed using the maximum likelihood algorithm. Eukaryotic supergroups are indi- cated in bold type. TABLE 1 , position of the ADHE dimer; , position of the PFL dimer. C, EM images of a stromal protein fraction using uranyl acetate as negative stain. (moderate) stimulating effect on all activities (Table 2), whereas an incubation in 100 mM EDTA had no clear inhibitory effect. with 0.34 mM of each product after an incubation of 8 h. In the case of strain 10-6C, the production of acetate appeared some- what lower than that of ethanol with 0.28 and 0.43 mM, respec- tively (Fig. 6), which suggests a slight shift in the distribution of acetyl-CoA toward ADHE. This imbalance could be explained by the increased ADHE levels in the mutant strain, although the increase in ethanol production (1.4) is not in proportion with the increase in ADHE abundance (3.5; Table 4). After 24 h of dark anoxia, the fermentation profiles of the WT strain were comparable with those at 8 h, indicating that no further fermen- tation occurred after 8 h. In contrast, the levels of each product excreted by the mutant strain after 24 h had approximately doubled relative to 8 h, reaching 1.2 mM formate, 0.5 mM ace- tate, and 0.83 mM ethanol (Fig. 6). The recombinant enzyme rADHE was further characterized for the substrate affinities of its forward reactions (reactions 1 and 2), which are metabolically relevant. Acetyl-CoA reduction (reaction 1) obeyed Michaelis-Menten kinetics with an appar- ent Km for acetyl-CoA of 12.7  2.9 M (Table 3). The kinetics of NADH is less clear and likely confounded by the fact that NADH is also used in reaction 2, using the reaction product of reaction 1. A typical Michaelis-Menten curve was obtained for NADH in acetaldehyde reduction (reaction 2) with a Km of 20.9  3.5 M (Table 3). Analysis of Fermentation Products by ADHE Overexpression Strain—To gain insights into the regulation of the carbon fluxes in the green alga, we investigated the fermentative capabilities of strain 10-6C, which accumulates 3.5 times more ADHE than the wild-type strain CC-124 (supplemental Fig. S1 and Table 4). Algal cells were incubated in dark conditions in AIB medium, a standard medium used to study algal fermentation (13). The products excreted by the cells were analyzed by HPLC at 0–8 h and at 24 h. TABLE 1 The ADHE gene was cloned into the pET24a vector, and the protein was expressed in Escherichia coli. A hexahistidine tag added to the C terminus of the ADHE allowed fast purification via affinity chromatography on a nickel column (Fig. 5A). The oligomerization of freshly purified rADHE was first assessed by gel filtration. The elution profile in 50 mM potas- sium phosphate, pH 7.0, supplemented with 150 mM NaCl revealed the heterogeneity of the sample, with different com- plexes of molecular masses ranging between 200 and 600 kDa (not shown). On a BN gel, rADHE was resolved as several bands (Fig. 5B): one major complex of 180 kDa, a complex of 500 kDa, and several minor bands at lower (120 kDa) and higher molecular mass ranges (669 kDa). This BN profile was repro- ducible, also when enzyme purification was carried out under atmospheric conditions (Fig. 5B, second lane). All protein bands, except the lowest at 90-kDa, showed a NAD-depen- dent alcohol dehydrogenase activity (Fig. 5B). The enzymati- 2398 VOLUME 292•NUMBER 6•FEBRUARY 10, 2017 JOURNAL OF BIOLOGICAL CHEMISTRY VOLUME 292•NUMBER 6•FEBRUARY 10, 2017 Chloroplast Aldehyde/Alcohol Dehydrogenase FIGURE 4. C. reinhardtii ADHE is located in the chloroplast stroma. A, organelle fractionation from strain 10-6C. Ce, cell extract; Cp, chloroplast fraction; Mt, mitochondrial fraction. Proteins were separated on SDS-PAGE (5–12% acrylamide gradient). Immunoblots show the distribution in isolated organelles of LHCs, subunit  of the mitochondrial F0F1-ATPase (ATP2), and ADHE. B, two-dimensional resolution of proteins in a stromal fraction. Proteins were subjected to BN (3–12%)/SDS-PAGE (10%) and further transferred to nitrocellulose for immunodetection. The blot was first probed for ADHE and then for PFL. , position of the ADHE dimer; , position of the PFL dimer. C, EM images of a stromal protein fraction using uranyl acetate as negative stain. oroplast stroma. A, organelle fractionation from strain 10-6C. Ce, cell extract; Cp, chloroplast fraction; Mt, FIGURE 4. C. reinhardtii ADHE is located in the chloroplast stroma. A, organelle fractionation from strain 10-6C. Ce, cell extract; Cp, chloroplast fraction; Mt, mitochondrial fraction. Proteins were separated on SDS-PAGE (5–12% acrylamide gradient). Immunoblots show the distribution in isolated organelles of LHCs, subunit  of the mitochondrial F0F1-ATPase (ATP2), and ADHE. B, two-dimensional resolution of proteins in a stromal fraction. Proteins were subjected to BN (3–12%)/SDS-PAGE (10%) and further transferred to nitrocellulose for immunodetection. The blot was first probed for ADHE and then for PFL. TABLE 3 increase in ADHE levels could be observed after 6 h of incuba- tion. After 24 h of incubation, the ADHE signal was unchanged in strain 10-6C but appeared fuzzy in strain CC-124 (Fig. 7B). We also followed PFL and PFO, the two enzymes that under anoxia can potentially produce acetyl-CoA, the substrate of ADHE (Fig. 1). During the first hours of dark incubation (up to 6 h), no variation in the PFL levels were noticed. After 24 h, the PFL abundance was unchanged in the mutant strain, whereas the protein could no longer be detected in the wild-type strain. For PFO, the antibodies failed to detect the protein under both oxic and anoxic conditions (not shown), in agreement with ear- lier studies (18). The RBCL abundance appeared stable over the incubation period in the mutant strain; in contrast, in the wild- type strain, RBCL was no longer detected after 24 h of incuba- tion (Fig. 7B). Notably, the levels of subunit  of the mitochon- drial ATPase (ATP2) in both strains were stable over the whole period of dark anoxia (Fig. 7B). The increased abundance of subunit  of chloroplast ATPase (ATPC) observed in WT strain may be due to a relative over-representation of stable proteins when the total number and amount of proteins is dwindling. Of note, neither the overall protein profiles nor the ADHE abun- dance were affected by the HP treatment (supplemental Fig. S4). Thus, rather than inducing a protein remodeling in the WT strain, it seems that prolonged dark anoxia has a deleterious effect on its overall proteome, likely representing a degradation of cell integrity. In contrast, the proteome of strain 10-6C, which exhibits higher ADHE levels, appears quite stable despite the prolonged anoxia. Strain 10-6C has been poorly character- ized so far, and the lack of knowledge on its genetic background hampered drawing firm conclusions as to the regulation of ADHE levels during aerobic growth and its importance in pro- longed dark anoxia. FIGURE 5. PAGE analysis of C. reinhardtii recombinant ADHE. A, purifica- tion of His-tagged C. reinhardtii ADHE (rADHE). Coomassie Brilliant Blue R stain of proteins separated on SDS-PAGE (10%). Lane a, E. coli soluble fraction; lane b, flow-through; lane c, 10 mM imidazole wash; lane d, rADHE eluted with 100 mM imidazole (10 g). B, freshly purified rADHE (25 g) was subjected to BN-PAGE (3–12%). TABLE 1 45 min after the shift to anoxia, formate, ethanol, and acetate were already detected in the extracellular medium, and their production continued steadily up to 8 h (Fig. 6). After 8 h of dark anoxia, the formate production by strains CC-124 and 10-6C was comparable at 0.6 mM (1  107 cells ml 1), indicating that the ADHE-overaccumulating strain catabolizes endogenous carbon reserves in a similar manner (products and kinetics) as the wild type, i.e. pyruvate stemming from glycolysis is directed mostly to pyruvate formate lyase (Fig. 1). When acetyl-CoA produced by PFL is equally distrib- uted between ADHE and the phosphotransacetylase-acetate kinase (PTA-ACK) route, ethanol and acetate are expected to be produced in equimolar amounts. A balanced production of acetate and ethanol was indeed observed for the WT strain, To further investigate the fermentative abilities of strain 10-6C in view of its elevated ADHE levels, we blocked the PFL- gated pathway by adding to the cells the PFL inhibitor sodium (HP) (16). As shown in Fig. 6, strains CC-124 and 10-6C dis- played the same overall response to HP: a production of for- mate and acetate nearly abolished, and the yield of ethanol increased by 1.5–2-fold. The HPLC profiles did not reveal any other metabolites, not even lactate. Thus, irrespective of the strain, ethanol homofermentation is the main (only) metabolic route when PFL is blocked, which is likely to proceed via PDC and ADHE (Fig. 1). The HP-inhibited cells showed the same fermentation trend during extended anoxia as compared with non-inhibited cells, i.e. fermentation by strain CC-124 stopped after 6 h but contin- ued in strain 10-6C. The ethanol production by the latter strain almost doubled between 6 and 24 h, reaching concentrations of 1.75 mM (Fig. 6). Altogether, our data indicated that the ADHE- overaccumulating strain exhibits an extended fermentative capacity compared with the wild-type strain, whether PFL is inactivated or not. FEBRUARY 10, 2017•VOLUME 292•NUMBER 6 2399 JOURNAL OF BIOLOGICAL CHEMISTRY 2399 FEBRUARY 10, 2017•VOLUME 292•NUMBER 6 Chloroplast Aldehyde/Alcohol Dehydrogenase TABLE 3 Km values of rADHE for the activities directed towards its physiological role, the production of ethanol Reaction no. Substrate Km 1 NADH 120.9  48.0 M 1 Acetyl-CoA 12.7  2.9 M 2 NADH 20.9  3.5 M 2 Acetaldehyde 35.0  17.6 mM Km values of rADHE for the activities directed towards its physiological role, the production of ethanol increase in ADHE levels could be observed after 6 h of incuba- tion. After 24 h of incubation, the ADHE signal was unchanged in strain 10-6C but appeared fuzzy in strain CC-124 (Fig. 7B). We also followed PFL and PFO, the two enzymes that under anoxia can potentially produce acetyl-CoA, the substrate of ADHE (Fig. 1). During the first hours of dark incubation (up to 6 h), no variation in the PFL levels were noticed. After 24 h, the PFL abundance was unchanged in the mutant strain, whereas the protein could no longer be detected in the wild-type strain. For PFO, the antibodies failed to detect the protein under both oxic and anoxic conditions (not shown), in agreement with ear- lier studies (18). The RBCL abundance appeared stable over the incubation period in the mutant strain; in contrast, in the wild- type strain, RBCL was no longer detected after 24 h of incuba- tion (Fig. 7B). Notably, the levels of subunit  of the mitochon- drial ATPase (ATP2) in both strains were stable over the whole period of dark anoxia (Fig. 7B). The increased abundance of subunit  of chloroplast ATPase (ATPC) observed in WT strain may be due to a relative over-representation of stable proteins when the total number and amount of proteins is dwindling. Of note, neither the overall protein profiles nor the ADHE abun- dance were affected by the HP treatment (supplemental Fig. S4). Thus, rather than inducing a protein remodeling in the WT strain, it seems that prolonged dark anoxia has a deleterious effect on its overall proteome, likely representing a degradation of cell integrity. In contrast, the proteome of strain 10-6C, which exhibits higher ADHE levels, appears quite stable despite the prolonged anoxia. Strain 10-6C has been poorly character- ized so far, and the lack of knowledge on its genetic background hampered drawing firm conclusions as to the regulation of ADHE levels during aerobic growth and its importance in pro- longed dark anoxia. Chloroplast Aldehyde/Alcohol Dehydrogenase Protein Levels in Dark Anoxia—Protein extracts from FIGURE 5. PAGE analysis of C. reinhardtii recombinant ADHE. A, purifica- tion of His-tagged C. reinhardtii ADHE (rADHE). Coomassie Brilliant Blue R stain of proteins separated on SDS-PAGE (10%). Lane a, E. coli soluble fraction; lane b, flow-through; lane c, 10 mM imidazole wash; lane d, rADHE eluted with 100 mM imidazole (10 g). B, freshly purified rADHE (25 g) was subjected to BN-PAGE (3–12%). Lane 1, rADHE purified under anaerobic conditions; lane 2, rADHE purified under atmospheric conditions; lane 3, S. cerevisiae ADH1 (0.5 g). C, detection of rADHE by immunoblotting after two-dimensional BN/SDS-PAGE. One BN gel lane was excised, subjected to denaturation in 1% SDS and 1% -mercaptoethanol, and further loaded on SDS-PAGE (10%). Pro- teins were then transferred to a nitrocellulose membrane and stained with Ponceau S. The membrane was probed for ADHE. Chloroplast Aldehyde/Alcohol Dehydrogenase TABLE 2 Enzymatic data on the recombinant ADHE Enzymatic data on the recombinant ADHE Standard reaction medium contains 50 mM potassium phosphate (pH 7.0). The substrates were used at the following concentrations: NAD (1.5 mM), NADH (0.4 mM), acetyl-CoA (100 M), coenzyme A (100 M), ethanol (200 mM), acetaldehyde (1 mM). “Fe” indicates incubation with 0.3 mM FeCl3. ( ) 3 Reaction no. Vmax pHmax molmin 1mg 1 1 0.88  0.18 6.5–7.0 1 (Fe) 1.07  0.09 2 4.00  0.63 6.5–7.0 2 (Fe) 4.99  1.21 3 0.85  0.06 3 (Fe) 1.20  0.40 4 0.69  0.29 4 (Fe) 0.83  0.33 TABLE 4 The analysis of cell sections by electron microscopy confirmed the higher starch TABLE 4 Relative abundance of ADHE and PFL in C. reinhardtii cells exposed to various physiological conditions Strain Phenotype Medium Light intensity ADHE relative PFL relative E m 2 s 1 CC-124 WT TAP 10–15 1 1 CC-124 WT TAP 40–50 1 1 CC-124 WT TAP 200 1.6–1.8 1.1–1.2 CC-124 WT HSM  2% CO2 40–50 0.3 NDa CC-124 WT TAP  DCMU 40–50 0.9–1.2 1.3–1.6 CC-124 WT TAP (no ZnSO4) 40–50 3.3–3.5 1.5–1.7 CC-124 WT N-free TAP (24 h) 40–50 2.5 0.75 10-6C Lacks RubisCO carboxylase activity TAP 40–50 3.4–3.6 1.4–1.6 10-6C Lacks RubisCO carboxylase activity TAP (no ZnSO4) 40–50 3.3–3.5 ND RBCL Lacks RubisCO TAP 10–15 0.2–0.3 1.1–1.4 CIA3 Lacks carbonic anhydrase 3 TAP 40–50 1.4–1.7 1.1–1.4 CIA5 Lacks CCM1 TAP 40–50 1.5–1.7 1.1–1.3 sta6 Impaired in starch synthesis TAP (no ZnSO4) 40–50 1.0–1.1 ND sta6 Impaired in starch synthesis TAP (no ZnSO4) 40–50 3.0–3.2 ND a ND, not determined. FIGURE 6. Fermentative products excreted by C. reinhardtii incubated in dark anoxia. Shown are the kinetics of acetate, formate, and ethanol produc- tion by the wild-type strain (upper graph) and the mutant strain (lower graph) incubatedinAIBmedium.Metabolitesintheextracellularmediumwereiden- tified by HPLC at the indicated times. HP indicates that 10 mM sodium hypophosphite was added to the incubation medium to inhibit PFL. Each value is the mean of at least four independent experiments carried out with cell suspensions at 107 cells ml 1. The error bars indicate standard deviations. Note the different scales for the two strains. 4 abundance of ADHE and PFL in C. reinhardtii cells exposed to various physiological conditions The establishment of metal deficiency was confirmed by the increased abundance of chaperone Zcp2 (supplemental Fig. S5) (38). Protein blots showed that the ADHE levels in zinc-defi- cient CC-124 were 3-fold higher than in zinc-replete cells (supplemental Fig. S5 and Table 4), thus making these cells of value for our fermentation studies. The response of zinc-deficient CC-124 cells to 24 h of dark anoxia was examined through the analysis of proteins and fer- mentation products (Fig. 8). HPLC analysis of excreted metab- olites indicated the presence of formate, acetate, and ethanol in a molar ratio of 2:1:1, being thus comparable with the ratio obtained with cells grown on standard TAP medium. TABLE 4 The respective amounts of these products were, however, found to be 2-fold higher in zinc-deficient cells as compared with zinc- replete cells (Fig. 8A), revealing the higher fermentative capac- ities of the metal-deficient cells. In contrast to zinc-replete CC-124 cells, the overall protein profile of zinc-deficient cells hardly changed after prolonged anoxia, as observed in strain 10-6C (Fig. 8B). Notably, the levels of ADHE, PFL, and the PTAs, which compete with ADHE for acetyl-CoA (Fig. 1), remained rather stable in zinc-deficient cells (Fig. 8B). On the whole, our data had several implications: (i) strain CC-124 is not intrinsically unfit to withstand prolonged anoxia, (ii) zinc deficiency enhances the cell capacity to survive anoxia, and (iii) in C. reinhardtii, the PFL-gated pathway is the preferred fer- mentative route irrespective of the zinc status of the cell. FIGURE 6. Fermentative products excreted by C. reinhardtii incubated in dark anoxia. Shown are the kinetics of acetate, formate, and ethanol produc- FIGURE 6. Fermentative products excreted by C. reinhardtii incubated in dark anoxia. Shown are the kinetics of acetate, formate, and ethanol produc- tion by the wild-type strain (upper graph) and the mutant strain (lower graph) incubatedinAIBmedium.Metabolitesintheextracellularmediumwereiden- tified by HPLC at the indicated times. HP indicates that 10 mM sodium hypophosphite was added to the incubation medium to inhibit PFL. Each value is the mean of at least four independent experiments carried out with cell suspensions at 107 cells ml 1. The error bars indicate standard deviations. Note the different scales for the two strains. p Evaluating ADHE Accumulation in Relation to Starch Levels—In the conditions of fermentation applied here, i.e. dark incubation in a potassium phosphate medium, starch content is believed to be key for the maintenance of cell integrity and survival. Indeed, starch is the source of glucose, directly fueling glycolysis to produce ATP under anoxia (Fig. 1). We therefore examined the starch content in the cells analyzed above. As shown in Fig. 9A, the amounts of starch in strain CC-124 increased 3–4-fold when zinc was removed from medium, reaching up to 5–6 g starch/106 cells. The analysis of cell sections by electron microscopy confirmed the higher starch content in zinc-deficient cells relative to zinc-replete cells (Fig. 9B). Of note, starch content in TAP-grown 10-6C cells was also found to be higher than in the reference CC-124 cells, with 6–7 g/106 cells (not shown). TABLE 4 TABLE 4 Relative abundance of ADHE and PFL in C. reinhardtii cells exposed to various physiological conditions deficient cells could be interpreted as a way to maintain a basal ADH capacity in the cell. Indeed, the replacement of the four predicted zinc-dependent ADHs (Cre09.g392134, Cre14. g623650,Cre03.g207800,andCre03.g207550)byfunctionalho- mologs that rel on other metals iron in partic lar co ld The establishment of metal deficiency was confirmed by the increased abundance of chaperone Zcp2 (supplemental Fig. S5) (38). Protein blots showed that the ADHE levels in zinc-defi- cient CC-124 were 3-fold higher than in zinc-replete cells (supplemental Fig. S5 and Table 4), thus making these cells of value for our fermentation studies. The response of zinc-deficient CC-124 cells to 24 h of dark anoxia was examined through the analysis of proteins and fer- mentation products (Fig. 8). HPLC analysis of excreted metab- olites indicated the presence of formate, acetate, and ethanol in a molar ratio of 2:1:1, being thus comparable with the ratio obtained with cells grown on standard TAP medium. The respective amounts of these products were, however, found to be 2-fold higher in zinc-deficient cells as compared with zinc- replete cells (Fig. 8A), revealing the higher fermentative capac- ities of the metal-deficient cells. In contrast to zinc-replete CC-124 cells, the overall protein profile of zinc-deficient cells hardly changed after prolonged anoxia, as observed in strain 10-6C (Fig. 8B). Notably, the levels of ADHE, PFL, and the PTAs, which compete with ADHE for acetyl-CoA (Fig. 1), remained rather stable in zinc-deficient cells (Fig. 8B). On the whole, our data had several implications: (i) strain CC-124 is not intrinsically unfit to withstand prolonged anoxia, (ii) zinc deficiency enhances the cell capacity to survive anoxia, and (iii) in C. reinhardtii, the PFL-gated pathway is the preferred fer- mentative route irrespective of the zinc status of the cell. Evaluating ADHE Accumulation in Relation to Starch Levels—In the conditions of fermentation applied here, i.e. dark incubation in a potassium phosphate medium, starch content is believed to be key for the maintenance of cell integrity and survival. Indeed, starch is the source of glucose, directly fueling glycolysis to produce ATP under anoxia (Fig. 1). We therefore examined the starch content in the cells analyzed above. As shown in Fig. 9A, the amounts of starch in strain CC-124 increased 3–4-fold when zinc was removed from medium, reaching up to 5–6 g starch/106 cells. TABLE 3 Lane 1, rADHE purified under anaerobic conditions; lane 2, rADHE purified under atmospheric conditions; lane 3, S. cerevisiae ADH1 (0.5 g). C, detection of rADHE by immunoblotting after two-dimensional BN/SDS-PAGE. One BN gel lane was excised, subjected to denaturation in 1% SDS and 1% -mercaptoethanol, and further loaded on SDS-PAGE (10%). Pro- teins were then transferred to a nitrocellulose membrane and stained with Ponceau S. The membrane was probed for ADHE. Protein Levels in Dark Anoxia—Protein extracts from CC-124 and 10-6C cells exposed to dark anoxia were analyzed by SDS-PAGE. As observed in Fig. 7A, a drastic change in the overall protein profile of wild-type cells was observed between 6 and 24 h, after fermentation stopped. In contrast, protein pro- files of mutant strain 10-6C appeared stable through the 24-h period. To gain insights into the respective acclimation of the two strains to dark anoxia, selected proteins were followed by immunoblotting experiments (Fig. 7B). For both strains, a slight Zinc Deficiency Increases ADHE Accumulation and Fermen- tative Abilities—In a study based on quantitative proteomics, it was reported that aerobic growth in conditions of zinc defi- ciency increased the ADHE intracellular levels by 3–4-fold in strain CC-4532 (38). The increased ADHE abundance in zinc- VOLUME 292•NUMBER 6•FEBRUARY 10, 2017 2400 JOURNAL OF BIOLOGICAL CHEMISTRY Chloroplast Aldehyde/Alcohol Dehydrogenase TABLE 4 Relative abundance of ADHE and PFL in C. reinhardtii cells exposed to v Strain Phenotype M CC-124 WT TAP CC-124 WT TAP CC-124 WT TAP CC-124 WT HSM CC-124 WT TAP  CC-124 WT TAP (n CC-124 WT N-free 10-6C Lacks RubisCO carboxylase activity TAP 10-6C Lacks RubisCO carboxylase activity TAP (n RBCL Lacks RubisCO TAP CIA3 Lacks carbonic anhydrase 3 TAP CIA5 Lacks CCM1 TAP sta6 Impaired in starch synthesis TAP (n sta6 Impaired in starch synthesis TAP (n a ND, not determined. FIGURE 6. Fermentative products excreted by C. reinhardtii incubated in dark anoxia. Shown are the kinetics of acetate, formate, and ethanol produc- tion by the wild-type strain (upper graph) and the mutant strain (lower graph) incubatedinAIBmedium.Metabolitesintheextracellularmediumwereiden- tified by HPLC at the indicated times. HP indicates that 10 mM sodium hypophosphite was added to the incubation medium to inhibit PFL. Each value is the mean of at least four independent experiments carried out with cell suspensions at 107 cells ml 1. The error bars indicate standard deviations. Note the different scales for the two strains. TABLE 3 deficient cells could be interpreted as a way to maintain a basal ADH capacity in the cell. Indeed, the replacement of the four predicted zinc-dependent ADHs (Cre09.g392134, Cre14. The establishment of metal deficienc increased abundance of chaperone Zcp (38). Protein blots showed that the A cient CC-124 were 3-fold higher th (supplemental Fig. S5 and Table 4), th value for our fermentation studies. The response of zinc-deficient CC- anoxia was examined through the ana mentation products (Fig. 8). HPLC ana olites indicated the presence of format a molar ratio of 2:1:1, being thus com obtained with cells grown on stand respective amounts of these products be 2-fold higher in zinc-deficient cells replete cells (Fig. 8A), revealing the hig ities of the metal-deficient cells. In CC-124 cells, the overall protein profi hardly changed after prolonged anox 10-6C (Fig. 8B). Notably, the levels o PTAs, which compete with ADHE f remained rather stable in zinc-deficien whole, our data had several implicatio not intrinsically unfit to withstand pr deficiency enhances the cell capacity to in C. reinhardtii, the PFL-gated pathw mentative route irrespective of the zin Evaluating ADHE Accumulation Levels—In the conditions of fermentati incubation in a potassium phosphate m believed to be key for the maintenan survival. Indeed, starch is the source of glycolysis to produce ATP under anox examined the starch content in the c shown in Fig. 9A, the amounts of s increased 3–4-fold when zinc was r 6 TABLE 4 Relative abundance of ADHE and PFL in C. reinhardtii cells exposed to various physiological conditions Strain Phenotype Medium Light intensity ADH relat E m 2 s 1 CC-124 WT TAP 10–15 1 CC-124 WT TAP 40–50 1 CC-124 WT TAP 200 1.6– CC-124 WT HSM  2% CO2 40–50 0.3 CC-124 WT TAP  DCMU 40–50 0.9– CC-124 WT TAP (no ZnSO4) 40–50 3.3– CC-124 WT N-free TAP (24 h) 40–50 2.5 10-6C Lacks RubisCO carboxylase activity TAP 40–50 3.4– 10-6C Lacks RubisCO carboxylase activity TAP (no ZnSO4) 40–50 3.3– RBCL Lacks RubisCO TAP 10–15 0.2–0 CIA3 Lacks carbonic anhydrase 3 TAP 40–50 1.4– CIA5 Lacks CCM1 TAP 40–50 1.5– sta6 Impaired in starch synthesis TAP (no ZnSO4) 40–50 1.0– sta6 Impaired in starch synthesis TAP (no ZnSO4) 40–50 3.0– a ND, not determined. FIGURE 6. Fermentative products excreted by C. reinhardtii incubated in dark anoxia. TABLE 3 Shown are the kinetics of acetate, formate, and ethanol produc- tion by the wild-type strain (upper graph) and the mutant strain (lower graph) incubatedinAIBmedium.Metabolitesintheextracellularmediumwereiden- tified by HPLC at the indicated times. HP indicates that 10 mM sodium hypophosphite was added to the incubation medium to inhibit PFL. Each value is the mean of at least four independent experiments carried out with cell suspensions at 107 cells ml 1. The error bars indicate standard deviations. Note the different scales for the two strains. TABLE 4 Relative abundance of ADHE and PFL in C. reinhardtii cells exposed to various physiological conditions Strain Phenotype Medium Light intensity ADHE relative PFL relative E m 2 s 1 CC-124 WT TAP 10–15 1 1 CC-124 WT TAP 40–50 1 1 CC-124 WT TAP 200 1.6–1.8 1.1–1.2 CC-124 WT HSM  2% CO2 40–50 0.3 NDa CC-124 WT TAP  DCMU 40–50 0.9–1.2 1.3–1.6 CC-124 WT TAP (no ZnSO4) 40–50 3.3–3.5 1.5–1.7 CC-124 WT N-free TAP (24 h) 40–50 2.5 0.75 10-6C Lacks RubisCO carboxylase activity TAP 40–50 3.4–3.6 1.4–1.6 10-6C Lacks RubisCO carboxylase activity TAP (no ZnSO4) 40–50 3.3–3.5 ND RBCL Lacks RubisCO TAP 10–15 0.2–0.3 1.1–1.4 CIA3 Lacks carbonic anhydrase 3 TAP 40–50 1.4–1.7 1.1–1.4 CIA5 Lacks CCM1 TAP 40–50 1.5–1.7 1.1–1.3 sta6 Impaired in starch synthesis TAP (no ZnSO4) 40–50 1.0–1.1 ND sta6 Impaired in starch synthesis TAP (no ZnSO4) 40–50 3.0–3.2 ND a ND, not determined. TABLE 4 Note that strain 10-6C exhibits higher levels of ADHE and PFL. Evaluating ADHE Accumulation in Relation to CO2 Re- quirements—A well documented effect of zinc deficiency in C. reinhardtii is the impairment of carbon-concentrating mechanism (CCM) under atmospheric conditions (38, 43). Therefore we considered the possibility that the aforemen- tioned rise in ADHE levels in zinc-deprived cells CC-124 and Sta6 might be a consequence of reduced CO2 availability. All the experiments described in this work were carried out with cells grown on TAP-derived medium under atmospheric conditions (0.04% CO2) at a light intensity of 40 E m 2 s 1. In these conditions, the cells rely on CCM to concentrate CO2 at the active site of the Rubisco (44). The ADHE abundance was first assessed in two CCM mutant strains: strain CIA5, which lacks Ccm1, a master gene regulator that controls the induction of CCM by sensing CO2 availability in C. reinhardtii (45, 46), and strain CIA3, which lacks CAH3, the thylakoid lumen car- bonic anhydrase, which provides CO2 to the Rubisco (47). The ADHE abundance in these two strains grown under atmo- spheric conditions was similar, being 1.5–1.8-fold higher than that in wild-type strain CC-124 (Table 4). and strain 10-6C, relative to standard CC-124 cells, is a direct result of a higher content in C-reserves. The associated increase in ADHE levels may be then projected to facilitate the ethanol fermentation of starch over longer periods. To further evaluate the link between ADHE up-regulation and starch accumulation, the protein abundance was followed after transferring the cells to TAP medium without ammonium (N-free medium). Such a medium is known to trigger the accu- mulation of large amounts of starch in the green alga C. rein- hardtii (39). Time course experiments with long term sampling (0, 17, 24, 40, 49, and 72 h) were carried out with strain CC-124. In our conditions, cellular starch content increased steadily during the first 2 days after transfer to N-free medium (Fig. 10). TABLE 4 These data thus suggest that the higher fermentation capacity of zinc-deficient CC-124 cells deficient cells could be interpreted as a way to maintain a basal ADH capacity in the cell. Indeed, the replacement of the four predicted zinc-dependent ADHs (Cre09.g392134, Cre14. g623650,Cre03.g207800,andCre03.g207550)byfunctionalho- mologs that rely on other metals, iron in particular, could ensure optimal (fermentative) metabolism. We first checked the response of our reference strain CC-124 to zinc deficiency. The alga was inoculated in Tris-acetate-Phosphate (TAP) medium without ZnSO4 and later transferred twice into the same medium to reduce the intracellular zinc content. FEBRUARY 10, 2017•VOLUME 292•NUMBER 6 2401 FEBRUARY 10, 2017•VOLUME 292•NUMBER 6 JOURNAL OF BIOLOGICAL CHEMISTRY FIGURE7.ProteinabundanceinresponsetodarkanoxiainstrainsCC-12 (wild type) and 10-6C (lacks Rubisco carboxylase activity). Cells were ke under dark anoxia in AIB medium at a cell concentration of 107 cells ml Proteins in cell extracts (40 g) were separated by urea/SDS-PAGE (6 M ure 5–12% acrylamide gel) and transferred to nitrocellulose membrane. Lane exponentially grown cells; lane 2, 6 h of incubation; lane 3, 24 h of incubatio A, nitrocellulose membrane was stained with Ponceau Red S. B, select pr teins were detected by immunoblot analyses with antisera against ADH PFL, the large subunit of Rubisco (RBCL), subunit  of mitochondrial ATPa (ATP2), and subunit  of chloroplast ATPase (ATPC). Note that strain 10-6 exhibits higher levels of ADHE and PFL. Chloroplast Aldehyde/Alcohol Dehydrogenase Chloroplast Aldehyde/Alcohol Dehydrogenase (Fig. 10). Later a slow decrease in the protein abundance was observed (Fig. 10). PFL levels appeared rather stable through- out the whole period, although a slight decrease was observed in the first hours of N-deprivation (Fig. 10). The behavior of ADHE and PFL in response to N-starvation is interesting because it contrasts with that of other chloroplast proteins, including enzymes of the Calvin-Benson-Bassham (CBB) cycle and components of the photosynthetic chain, whose levels decreased shortly after the transfer to N-free medium (40, 41). Here we observed within the first 24 h of N-starvation an important decrease (more than 50%) in the abundance of RBCL and phosphoribulokinase, two key enzymes of the CBB cycle, and of ADP-glucose pyrophosphorylase (ADPG; EC 2.7.7.27), the chloroplast enzyme that catalyzes the first committed step in starch synthesis. The decrease in ADPG while starch content increases is puzzling (Fig. TABLE 4 10) but could indicate that ADPG is present at overcapacity in TAP-grown cells and is tuned down to a minimum level to sustain starch production in N-free medium. Altogether, our observations indicate that ADHE, which is synthesized in conditions where N is limiting, occupies a position of priority among chloroplast proteins. Finally, we addressed the potential link between ADHE accu- mulation and starch synthesis. For that, we used mutant strain Sta6, which is unable to synthesize starch because it lacks the ADPG small subunit (42). In this strain growing on standard TAP medium, ADHE is present at low levels, comparable with those in wild-type strain CC-124 (Table 4). The transfer of Sta6 cells to zinc-deficient TAP medium led to a 3-fold increase in ADHE abundance (Table 4), similar to that observed with wild- type strain CC-124. From the study of starch-less strain Sta6, it can be inferred that ADHE accumulation is not directly con- trolled by starch synthesis. This does, however, not exclude a common origin of the regulation of ADHE and starch. FIGURE7.ProteinabundanceinresponsetodarkanoxiainstrainsCC-124 (wild type) and 10-6C (lacks Rubisco carboxylase activity). Cells were kept under dark anoxia in AIB medium at a cell concentration of 107 cells ml 1. Proteins in cell extracts (40 g) were separated by urea/SDS-PAGE (6 M urea, 5–12% acrylamide gel) and transferred to nitrocellulose membrane. Lane 1, exponentially grown cells; lane 2, 6 h of incubation; lane 3, 24 h of incubation. A, nitrocellulose membrane was stained with Ponceau Red S. B, select pro- teins were detected by immunoblot analyses with antisera against ADHE, PFL, the large subunit of Rubisco (RBCL), subunit  of mitochondrial ATPase (ATP2), and subunit  of chloroplast ATPase (ATPC). Note that strain 10-6C exhibits higher levels of ADHE and PFL. FIGURE7.ProteinabundanceinresponsetodarkanoxiainstrainsCC-124 (wild type) and 10-6C (lacks Rubisco carboxylase activity). Cells were kept under dark anoxia in AIB medium at a cell concentration of 107 cells ml 1. Proteins in cell extracts (40 g) were separated by urea/SDS-PAGE (6 M urea, 5–12% acrylamide gel) and transferred to nitrocellulose membrane. Lane 1, exponentially grown cells; lane 2, 6 h of incubation; lane 3, 24 h of incubation. A, nitrocellulose membrane was stained with Ponceau Red S. B, select pro- teins were detected by immunoblot analyses with antisera against ADHE, PFL, the large subunit of Rubisco (RBCL), subunit  of mitochondrial ATPase (ATP2), and subunit  of chloroplast ATPase (ATPC). TABLE 4 Followed by protein blots, the ADHE steady-state levels were found to increase progressively during the first 24 h (2.5-fold) (Table 4), thus correlating with the increase in starch content Additional observations provided further support for a link between the ADHE levels and the CO2 availability: (i) ADHE was hardly detected in wild-type strain CC-124 grown on TAP medium supplemented with 2% CO2 (in these conditions CCM is not required) (Table 4); (ii) ADHE was only faintly observed VOLUME 292•NUMBER 6•FEBRUARY 10, 2017 2402 2402 JOURNAL OF BIOLOGICAL CHEMISTRY Chloroplast Aldehyde/Alcohol Dehydrogenase FIGURE 8. Fermentation by zinc-deficient cells. Cells were incubated for 24 h under dark anoxia in AIB medium, at a concentration of 107 cells ml 1. Sample 1, strain CC-124 grown on TAP medium; sample 2, strain CC-124 grown on zinc-deficient TAP medium; sample 3, strain 10-6C grown on TAP medium. A, fermentation products excreted after 24 h in dark anoxia. Metabolite concentrations are given for 107 cells ml 1. B and C, proteins in extracts from cells before (t  0) and after a prolonged incubation in anoxia (t  24 h) were analyzed on urea/SDS-PAGE (6 M urea, 5–12% acrylamide) and transferred to nitrocellulose membrane. B, Ponceau S-stained nitrocellulose membrane. C, immunoblots showing the levels of specific fermentative enzymes. The two bands detected by the anti-PTA serum likely correspond to the chloroplast and mitochondrial isoforms of phosphotransacetylase (supplemental Fig. S6 and S7). Chloroplast Aldehyde/Alcohol Dehydrogenase FIGURE 8. Fermentation by zinc-deficient cells. Cells were incubated for 24 h under dark anoxia in AIB medium, at a concentration of 107 cells ml 1. Sample 1, strain CC-124 grown on TAP medium; sample 2, strain CC-124 grown on zinc-deficient TAP medium; sample 3, strain 10-6C grown on TAP medium. A, fermentation products excreted after 24 h in dark anoxia. Metabolite concentrations are given for 107 cells ml 1. B and C, proteins in extracts from cells before (t  0) and after a prolonged incubation in anoxia (t  24 h) were analyzed on urea/SDS-PAGE (6 M urea, 5–12% acrylamide) and transferred to nitrocellulose membrane. B, Ponceau S-stained nitrocellulose membrane. C, immunoblots showing the levels of specific fermentative enzymes. The two bands detected by the anti-PTA serum likely correspond to the chloroplast and mitochondrial isoforms of phosphotransacetylase (supplemental Fig. S6 and S7). TABLE 4 in strain RBCL (Table 4), which lacks Rubisco because of a large deletion in the chloroplast RBCL gene (48). This strain, which is light-sensitive, relies mostly on mitochondrial metab- olism for growth (49); and (iii) at the 5 -UTR of the ADHE gene a typical low CO2 cis-acting enhancer element was identified (GAGTTGC; position 299 to 293 from the ATG) (50), which argues for the up-regulation of the ADHE expression under low CO2. (pathogens), but over the last decade, ADHE genes have been uncovered in species of varied lifestyles. In particular, ADHEs have been found in photosynthetic microalgae thriving in fresh or marine waters (14). Despite the significant set of bacterial and eukaryotic ADHE sequences used in our phylogenetic anal- ysis (supplemental Data Set S1), the evolutionary history of eukaryote enzymes remains confusing. Only in the case of pho- tosynthetic microalgae, the ADHE is found in two distinct posi- tions in the tree (Fig. 2): the enzymes in B. natans and G. theta are found among most of their counterparts in anaerobic eukaryotes, between the two bacterial protein clusters, whereas the chlorophyte ADHEs are found in cluster I, in close proxim- ity to the cyanobacterial counterparts (Fig. 2). Hence, at least two different ADHE gene donors have to be considered in the evolution of unicellular algae. Light was also found to influence the ADHE abundance in C. reinhardtii. Wild-type CC-124 cells were grown to early exponential-phase on TAP medium at a light intensity of 40 mol photons m 2 s 1 and later exposed to different light intensities for 20 h. Cells grown at 15 and 40 E m 2 s 1 exhib- ited similar amounts of ADHE, whereas cells grown at 200 E m 2 s 1 contained slightly more ADHE (Table 4). At higher light intensity, the cells require more CO2, which may not be fulfilled under the atmospheric conditions and thus constitute a signal for ADHE accumulation. Microalgae with primary plastids, i.e. chlorophytes, rhodo- phytes, glaucophytes, are believed to have emerged from the ancient endosymbiosis of a cyanobacterium in a heterotrophic eukaryote (51). As shown here, a vertical inheritance of ADHE from cyanobacteria appears sound for the chlorophytes, espe- cially because the enzyme is present in the species of the orders Nostocales and Stigonematales, proposed to be at the origin of all primary plastids (52). Up to now, only few genomes of glau- Chloroplast Aldehyde/Alcohol Dehydrogenase cophytes and rhodophytes have been sequenced, none of them containing any ADHE genes. The evolution of the ADHE gene (retention versus loss) among species with primary plastids can- not be understood without more genome sequences from these glaucophyte and rhodophyte algal lineages. Throughout this work we have identified situations (mutant strains and physiological conditions) that induce fluctuations in ADHE abundance in C. reinhardtii. Increased ADHE abun- dance was observed in cells growing on TAP medium lacking zinc or a nitrogen source (Figs. 8 and 10), in mutant strains impaired in the carbon concentrating mechanism (CIA5 and CIA3), in cells lacking Rubisco carboxylase activity (strain 10-6C), or even in conditions of high light (Table 4). Inversely, ADHE was hardly detected in cells that do not rely on CCM for growth (Table 4). A possible rationale for an increased ADHE abundance in conditions where carbon concentration is impaired may relate to an over-reduction state of the chloro- plast: low CO2 or the absence of CBB cycle activity will strongly decrease CO2 reduction, which is a major electron sink in the light. Interestingly, our data showed that enhanced ADHE lev- els coincide with higher starch content in the cells; that is the case for cells growing on TAP medium lacking zinc or a nitro- gen source and in cells lacking Rubisco carboxylase activity (strain 10-6C) (Figs. 8 and 10). As described earlier, we have identified a cis-acting element in the promotor region of the ADHE gene that could provide a rationale for the observed regulatory influence of CO2. Importantly, the same type of ele- ment was found in the AGDP gene, the rate-limiting enzyme involved in starch synthesis. A concerted induction by low CO2 could constitute a direct link between ADHE and starch syn- thesis. Still, a probable factor in the concerted accumulation of ADHE and starch is an increase in reducing equivalent levels, as is known for bacterial ADHEs. Indeed, all conditions where ADHE is up-regulated imply a diminished use of reducing equivalents, for example a defunct Rubisco. The reason why this is not sufficient in C. reinhardtii is that, unlike bacteria, the C. reinhardtii is the first eukaryote known so far in which the ADHE localizes to the chloroplast; such a compartmentaliza- tion is likely reminiscent of the cyanobacterial ancestor. Chloroplast Aldehyde/Alcohol Dehydrogenase FIGURE 9. Impact of zinc on starch accumulation. A, starch content in expo- nentiallygrowingC. reinhardtiicells(strainCC-124).Thedataarethemeansof at least three independent replicates. B, electron micrographs of cell sections showing higher starch content in cells deficient in zinc compared with cells grown in presence of zinc. C. reinhardtii (Fig. 6). In this respect, the microalga differs from the facultative anaerobic bacteria studied to date. In E. coli, for example, ADHE abundance increases up to 10-fold upon expo- sure to anoxia (54). In Staphylococcus aureus, ADHE is a target of the redox sensing transcriptional regulator Rex, which regu- lates most genes encoding fermentative enzymes (55). The few data on photosynthetic bacteria (cyanobacteria) also point at a regulation by anoxia: the AdhE transcripts in Synechococcus species in microbial mats (Octopus Spring, Yellowstone National Park) were shown to increase during the evening (56). The rationale for the different enzyme regulation between fac- ultative anaerobic bacteria and C. reinhardtii is likely to be found in differences in lifestyle and cell complexity. The con- stitutive accumulation in the alga might specify the need to respond quickly to dark anoxia. It could make good sense for C. reinhardtii to produce ADHE, a large protein, under aerobic conditions when energy is not usually limiting rather than under anoxia, when ATP is in short supply. This also holds for PFL, which accumulates under aerobic conditions (12) (Figs. 7 and 8). Alternatively, the accumulation of ADHE under oxic conditions could indicate that the enzyme is also required in aerated environments. Production of ethanol under atmo- spheric conditions, as it happens in S. cerevisiae, seems unlikely because ethanol has not been detected in the culture medium of aerobically growing algae (not shown). The ADHE in the alga could also have a function not directly linked to ethanol metab- olism, as reported recently in E. coli (57, 58). FIGURE 9. Impact of zinc on starch accumulation. A, starch content in expo- nentiallygrowingC. reinhardtiicells(strainCC-124).Thedataarethemeansof at least three independent replicates. B, electron micrographs of cell sections showing higher starch content in cells deficient in zinc compared with cells grown in presence of zinc. FIGURE 9. Impact of zinc on starch accumulation. A, starch content in expo- nentiallygrowingC. reinhardtiicells(strainCC-124).Thedataarethemeansof at least three independent replicates. B, electron micrographs of cell sections showing higher starch content in cells deficient in zinc compared with cells grown in presence of zinc. Discussion Bifunctional aldehyde/alcohol dehydrogenases are present in a variety of facultative and strict anaerobic bacteria but remain so far undetected in Archaea. In the eukaryotic world, ADHEs have long been thought to be restricted to anaerobic species FEBRUARY 10, 2017•VOLUME 292•NUMBER 6 2403 JOURNAL OF BIOLOGICAL CHEMISTRY FEBRUARY 10, 2017•VOLUME 292•NUMBER 6 Chloroplast Aldehyde/Alcohol Dehydrogenase an only ferment internal starch reserves, which thu synthesized first. For this, an increase in ATP status d d h f h i h l i i C E 10. ADHE levels increase upon exposure to nitrogen star ions.Starchcontentandselectproteinswereanalyzedaftertra hardtii strain CC-124 to N-free TAP medium. Proteins in cell e separated on SDS-PAGE (10%) and transferred to nitroce rane. In our experimental conditions, the alga ferments its carbon stores mainly into formate, acetate, and ethanol in a molar ratio of 2:1:1. This mixed acid fermentation indicates the involve- ment of a metabolic pathway gated through PFL. The use of this route has a clear advantage over other more typical routes in eukaryotes (PDC/ADH or lactate dehydrogenase) (Fig. 1) as it balances NAD regeneration with the need for energy produc- tion in conditions of dark anoxia. Here we showed that cells with elevated ADHE levels (strain 10-6C and zinc-deprived strain CC-124) exhibit the same mixed acid fermentation rate but have extended fermentation abilities. This means that ADHE is not rate-limiting in this fermentative pathway. From the product yields at 24 h (Figs. 6 and 8), it is inferred that the fermentation span is at least 16 h. Furthermore, our results revealed the higher stability of the overall proteome in cells with enhanced ADHE levels. After 24 h of dark anoxia, the protein profiles of the cells with higher ADHE content were shown to be unaltered, contrasting with the situation in the reference cells where protein degradation, in particular degradation of fermentative enzymes, takes place. Cells with higher ADHE are better suited to survive under dark anoxia, which appears most immediately linked to the content in endogenous carbohydrate content. If we assume that ADHE is only required for anaerobic metabolism, it could be hypothesized that the high ADHE con- tent, which seems intricately linked to high starch levels, antic- ipates the loss of protein because of inactivation and/or degra- dation that inevitably occurs over the extended fermentation periods that higher starch stores will allow. The question of whether an increased ADHE level is indeed crucial for pro- longed anoxic survival remains to be answered because we have not identified a condition or strain with high starch and low amounts of ADHE. The amazing ability of C. Chloroplast Aldehyde/Alcohol Dehydrogenase reinhardtii to sur- vive over long periods of dark anoxia was in some way unex- pected for a photosynthetic alga that typically lives in mid lati- tudes where day (light) length varies only moderately. It would thus appear that other conditions than light also determine to what extent the algal cell is in fact exposed to conditions of dark anoxia. FIGURE 10. ADHE levels increase upon exposure to nitrogen starvation conditions.Starchcontentandselectproteinswereanalyzedaftertransferof C. reinhardtii strain CC-124 to N-free TAP medium. Proteins in cell extracts were separated on SDS-PAGE (10%) and transferred to nitrocellulose membrane. We believe that the present work forms a solid basis to dis- close the molecular details of the ADHE regulation in C. rein- hardtii. The predominant role of ADHE in the fermentation metabolism of the green alga is confirmed here, but our studies cannot rule out the possibility that this enzyme has other func- tions (under oxic conditions). To elucidate the mechanism underlying the aldehyde/alcohol dehydrogenase up-regulation as well as to identify potential alternative functions for ADHE in the green alga, the examination of counterparts from diverse biochemical context and thriving in different environments is expected to provide valuable insights. Among the ADHEs that would deserve scrutiny are those from cyanobacteria and from non-chlorophyte photosynthetic algae, such as the members of the SAR supergroup, in which the repertoire of fermentative enzymes is distinct from that in chlorophytes (14). FIGURE 10. ADHE levels increase upon exposure to nitrogen starvation conditions.Starchcontentandselectproteinswereanalyzedaftertransferof C. reinhardtii strain CC-124 to N-free TAP medium. Proteins in cell extracts were separated on SDS-PAGE (10%) and transferred to nitrocellulose membrane. alga can only ferment internal starch reserves, which thus have to be synthesized first. For this, an increase in ATP status is also required, and therefore we theorize that regulation in C. rein- hardtii requires increases in both redox equivalents and adenyl- ate status. Chloroplast Aldehyde/Alcohol Dehydrogenase Despite the chloroplast confinement, the algal ADHE exhibits molecular and enzymatic traits comparable with those of its counterparts in bacteria and amitochondriate eukaryotes. This is significant because ADHE is known as a major target of met- al-catalyzed oxidation (53). In this process, Fe2 ions in the protein active site (Fig. 1) react with ROS and generate hydroxyl radicals. In turn, these radicals can selectively oxidize the nearby His residue, leading to the irreversible inactivation of the enzyme. Also interesting is the fact that spirosome-like structures were found in an ADHE-enriched stromal fraction. Assuming that these assemblies are indeed ADHE oligomers, this would indicate that the formation of spirosomes can also take place in the oxygen-rich atmosphere of the chloroplast. Previous studies on the fermentative capacities of C. rein- hardtii indicated that both the chloroplast and the mitochon- dria contained a complete PFL-gated pathway, composed of a PFL, a PTA-ACK, and an ADHE (8). Although the presence of a PFL and PTA-ACK in mitochondria has been confirmed by biochemical and molecular approaches (12, 24), the attempts to detect an ADHE have failed as yet (12, 33) (Fig. 4). Further studies will determine whether PFL and PTA-ACK form a pathway leading to formate and acetate or whether they act independently in the mitochondrion. Our study adds further weight to the notion that decreased oxygen availability is not a signal for ADHE accumulation in VOLUME 292•NUMBER 6•FEBRUARY 10, 2017 2404 JOURNAL OF BIOLOGICAL CHEMISTRY 2404 VOLUME 292•NUMBER 6•FEBRUARY 10, 2017 Chloroplast Aldehyde/Alcohol Dehydrogenase lysate and in a chloroplast soluble fraction. For the two latter samples, 3–4 g of proteins were stacked at the top of a 10% acrylamide gel, and gel bands containing the concentrated pro- teins were cut out. All gel bands were cut in pieces before being washed by six successive incubations of 15 min in 25 mM NH4HCO3 and in 25 mM NH4HCO3 containing 50% (v/v) ace- tonitrile. Gel pieces were then dehydrated with 100% acetoni- trile and incubated for 45 min at 53 °C with 10 mM DTT in 25 mM NH4HCO3 and for 35 min in the dark with 55 mM iodoacet- amide in 25 mM NH4HCO3. Alkylation was stopped by adding 10 mM DTT in 25 mM NH4HCO3 and mixing for 10 min. Gel pieces were then washed again by incubation in 25 mM NH4HCO3 before dehydration with 100% acetonitrile. Modi- fied trypsin (Promega, sequencing grade) in 25 mM NH4HCO3 was added to the dehydrated gel pieces for an overnight incu- bation at 37 °C. Peptides were then extracted in three sequential extraction steps (15 min each) in 30 l of 50% acetonitrile, 30 l of 5% formic acid, and finally 30 l of 100% acetonitrile. The pooled supernatants were then dried under vacuum. nit1 nit 2 ), CC-4348 (Sta6-1 mt), and CC-2702 (CIA5). From the ChlamyStation Collection (CNRS UMR7141, Paris, France) were obtained the Rubisco mutants 10-6C.arg2.mt and RbcL 1.7.5. The presence of the point mutation G171D in RBCL, which confers impaired CO2 fixation in strain 10-6C (31, 32), was confirmed in this work by protein-based mass spec- trometry analysis (supplemental Fig. S2). Strain CIA3 was a gift from Göran Samuelsson (Umeå University, Umeå, Sweden). All strains were maintained at 24 °C on TAP medium (59) contain- ing 1.5% agar. For strain 10-6C.arg2.mt, TAP medium was supplemented with arginine (100 mg/ml). All media were pre- pared with MilliQ water. The cells were grown in flasks on TAP medium unless oth- erwise stated. Flasks were placed in an Innova incubator (New Brunswick Scientific) at 125 rpm under continuous light at 24 °C. The cells were routinely grown at a light intensity of 40–50 E m 2 s 1, except strain RbcL 1.7.5 at 10–15 E m 2 s 1. Wild-type strain CC-124 was also grown at 15 and 200 E m 2 s 1. Chloroplast Aldehyde/Alcohol Dehydrogenase For growth in absence of zinc, the culture medium was prepared by omitting ZnSO4 from the standard TAP medium. Cells from TAP plates were inoculated into 100-ml of “zinc-free” medium and grown to their late exponential phase. The cells were then transferred into a fresh medium without zinc at a cell concentration of  1  105 cells ml 1. Zinc defi- ciency was reached after a third round of transfer into “zinc- free” medium. The analyses of zinc-deficient cells were carried out on cells harvested in their mid-exponential phase. N-free medium was prepared by omitting ammonium chloride from the TAP medium. The cells subjected to N-deprivation were grown to 3–4  106 cells ml 1 and collected by centrifugation at 1,500  g for 5 min at room temperature. The cells were washed in N-free TAP medium and finally resuspended in N-free TAP to 1  106 cells ml 1. For experiments involving CO2 supplementation, the cultures were grown in an incubator bubbled with an atmosphere of 2% CO2 in air. The cell densities were determined using a Malassez hemocytometer after addi- tion of Lugol’s solution (Sigma-Aldrich) to the cell suspension to immobilize the cells. The dried extracted peptides were resuspended in 5% aceto- nitrile and 0.1% trifluoroacetic acid and analyzed by online nanoLC-MS/MS (Ultimate 3000, Dionex, and LTQ-Orbitrap Velos pro; Thermo Scientific). Peptides were sampled on a 300 m  5 mm PepMap C18 precolumn and separated on a 75 m  250 mm C18 column (PepMap, Dionex). The nanoLC methods consisted of 25- and 120-min acetronitrile gradients in 0.1% formic acid at a flow rate of 300 nl/min for, respectively, gel band and stacking analyses. MS and MS/MS (Top20) data were acquired using Xcalibur (Thermo Scientific) and pro- cessed automatically using Mascot Daemon software (version 2.5; Matrix Science). Searches against the Phytozome database (version 9.0, C. reinhardtii taxonomy) (61), a homemade clas- sical contaminants database, and the corresponding reversed databases were performed using Mascot (version 2.5.1). ESI- TRAP was chosen as the instrument, trypsin/P was chosen as the enzyme, and two missed cleavages allowed. Precursor and fragment mass error tolerances were set, respectively, at 10 ppm and at 0.6 Da. Peptide modifications allowed during the search werecarbamidomethyl(C,fixed)acetyl(N-terminal,variable),and oxidation (M, variable). Experimental Procedures C. reinhardtii Strains, Media, and Culture Conditions— From the Chlamydomonas Resource Center of Minnesota Uni- versity, the following strains were obtained: CC-124 (137c mt FEBRUARY 10, 2017•VOLUME 292•NUMBER 6 FEBRUARY 10, 2017•VOLUME 292•NUMBER 6 2405 JOURNAL OF BIOLOGICAL CHEMISTRY 2405 VOLUME 292•NUMBER 6•FEBRUARY 10, 2017 Chloroplast Aldehyde/Alcohol Dehydrogenase A BN gel lane was washed twice in 100 mM Tris (pH 8.8) and then incu- bated in 25 ml of 100 mM Tris-Cl (pH 8.8) containing 20 mg of NAD, 5 mg of nitroblue tetrazolium, 1 mg of phenazine metho- sulfate, and 25 l of absolute ethanol. In the presence of phen- azine methosulfate, nitroblue tetrazolium reacts with NADH produced by dehydrogenases to produce an insoluble blue-pur- ple formazan precipitate. For two-dimensional BN/SDS-PAGE, a BN gel lane was cut out after the run, washed three times for 5 min in 1% SDS and 1% 2-mercaptoethanol, and then applied on top of a 10% SDS-PAGE gel. After electrophoresis, the proteins were transferred onto nitrocellulose membrane. Starch Quantification—Cells (2–5  106 cells) from cultures or anaerobic incubations were collected by centrifugation (5 min at 14,000  g) and frozen in liquid nitrogen until use. To disrupt cell integrity and extract pigments, 1 ml of 80% acetone is added to each cell pellet. The cell residues obtained after centrifugation were rinsed with 0.5 ml of 100 mM sodium ace- tate buffer (pH 4.5) and then resuspended in 300 l of the same buffer and heat-treated for 20 min at 120 °C for starch solubili- zation. Total starch was quantified using an enzymatic starch assay kit including amyloglucosidase, hexokinase, and glucose- 6-phosphate dehydrogenase (R-Biopharm, Darmstadt, Ger- many). Alternatively, solubilized starch was stained using a commercial iodine solution (Sigma) as follows: 100 l of solu- bilized starch were mixed to 800 l of water and 100 l of Lugol’s solution. Absorbance was measured spectrophoto- metrically at 580 nm. Quantification was done using commer- cial starch (R-Biopharm). The results from both methods were comparable. Determination of Protein Concentration, SDS-PAGE, and Immunodetection—Protein concentrations were routinely deter- mined using the bicinchoninic acid-based Thermo Pierce pro- tein assay kit, and bovine serum albumin as standard. When protein concentrations of cell extracts were to be deter- mined, proteins were first precipitated by CHCl3/MeOH (63) and then resuspended in 2% SDS (w/v). Proteins were analyzed either on 10% acrylamide SDS-PAGE, 7.5–12% acrylamide SDS-PAGE, or 5–12% acrylamide gels containing 6 M urea (urea/SDS-PAGE). Protein samples (40 g) were resuspended in 2% SDS (w/v) and 2% -mercaptoethanol and boiled for 90 s. Insoluble material was then removed via a 2-min centrifugation at 13,000  g. Apparent molecular masses were estimated using prestained protein ladder Plus (Euromedex). Chloroplast Aldehyde/Alcohol Dehydrogenase Analysis of Fermentation Products—Cells acclimated to dark anoxia were harvested by centrifugation (7 min at 14,000  g). The resulting supernatants were filtered through a nylon filter (0.2 m) and frozen until use. Prior to the analysis by HPLC (Agilent 1260), the samples were diluted twice in 10 mM H2SO4 and centrifuged briefly. The fermentative products were then separated using a HiPlex-H column for carbohydrates, organic acids, and alcohols (300  7.7 mm, 8 m; Agilent) at 50 °C; the mobile phase was 10 mM sulfuric acid, and the flow rate was 0.6 ml/min. Detection was done with a refractive index detector (50 °C) and a photodiode array detector operating at 210 and 280 nm. The predominant products were identified as formate (14 min), acetate (15.3 min), and ethanol (21.7 min). Signals were integrated, and metabolites were quantified using a stan- dard curve generated for each metabolite detected. (AS10691), and RbcL (AS03037). Antibodies against ADHE, PFL, and ATP2 were described by (12). Antibodies to PTAs were generated by immunization using heterologous protein (supplemental Figs. S6 and S7). Anti-LHC was from O. Vallon (Institut de Biologie Physico-Chimique (IBPC), Paris, France), and anti-phosphoribulokinase was from Mike Salvucci (U.S. Department of Agriculture, Washington, D. C.). The Zcp2 anti- bodies were a gift from S. Merchant (UCLA, Los Angeles, CA). Anti-rabbit IgG peroxidase conjugate (Sigma-Aldrich) was used as secondary antibody. Immunochemical detection was carried out using the homemade enhanced chemiluminescence system (64) and Image Quant LAS 4000 mini (GE). y ( ) g Q ( ) BN-PAGE and Two-dimensional SDS-PAGE—BN-PAGE was carried out using a 3–12% linear polyacrylamide gradient (27). Freshly purified rADHE (25 g) was supplemented with loading buffer that contains 30 mG/ml Blue G in 50 mM Tricine (pH 8.0). Electrophoresis was carried out at 4 °C at constant current (10 mA) for 1 h. The molecular mass of the rADHE oligomers separated on BN-PAGE were evaluated using com- mercial molecular mass markers (bovine serum albumin (66 kDa), S. cerevisiae alcohol dehydrogenase (150 kDa), horse spleen apoferritin (443 kDa), and bovine thyroglobulin (669 kDa) (Sigma-Aldrich)). In-gel alcohol dehydrogenase activity assay was performed at room temperature as follows. Chloroplast Aldehyde/Alcohol Dehydrogenase The IRMa software (62) (version 1.31.1) was used to filter the results: conservation of rank 1 peptides, pep- tide identification false discovery rate  1% (as calculated on pep- tide scores by employing the reverse database strategy), and min- imum of 1 specific peptide/identified protein group. Organelle Isolation and Partial Purification of Chloroplast ADHE—Isolation of chloroplasts and mitochondria from mutant strain 10-6C was essentially as described in (60). For the ADHE partial purification, the chloroplasts were resuspended in 50 mM HEPES (pH 7.0) in presence of protease inhibitors (0.5 mM benzamidine and 1 mM aminocaproic acid) to a final pro- tein concentration of 5 mG/ml, frozen and thawed twice, and centrifuged at 11,000  g for 15 min at 4 °C. The ADHE-con- taining supernatant was applied to an anion exchange Ceramic HyperD resin (GE Healthcare), equilibrated, and eluted with 50 mM HEPES (pH 7.0). In these conditions, ADHE was not retained on the column. ADHE in the flow-through was either pelleted by ultracentrifugation at 110,000  g for 1 h (4 °C) or applied on a Blue Sepharose 6 (GE Healthcare). Elution from the Blue resin was achieved with 1 M NaCl in 50 mM HEPES (pH 7.0). Mass Spectrometry Analysis—For mass spectrometry analy- sis, different samples were analyzed. Whole chloroplasts were loaded on 6 M urea/SDS-PAGE (5–12% acrylamide), and gel bands containing PTAs (80 kDa), RBCL (45 kDa), and ADHE (100-kDa) were cut out. ADHE was also identified in whole cell Dark Fermentation—500–700 ml of cultures in their mid- exponential phase were harvested, washed in 10–20 ml of fil- tered-sterilized anaerobic induction buffer (AIB) medium, and finally resuspended in sterile AIB medium to a cell concentra- tion of 1  107 cells ml 1. 30 ml of cell suspension was trans- ferred to a 60-ml glass serum bottle. Each bottle was closed with a butyl rubber stopper, wrapped in aluminum foil, degassed for 10 min, and then purged with argon for 15 min. The bottles were placed in an incubator at 24 °C and agitated at 125 rpm. Where indicated, sodium hypophosphite (at a final concentra- tion of 10 mM) was added to the cell suspension. Anerobic sam- ples were taken regularly and processed for the analysis of pro- tein, fermentation products, and starch content (see below). After each sampling, the bottles were flushed with argon. VOLUME 292•NUMBER 6•FEBRUARY 10, 2017 2406 JOURNAL OF BIOLOGICAL CHEMISTRY References 1. Oren, A., and Shilo, M. (1979) Anaerobic heterotrophic dark metabolism in the cyanobacterium Oscillatoria limnetica: sulfur respiration and lac- tate fermentation. Arch. Microbiol. 122, 77–84 2. Moezelaar, R., Bijvank, S. M., and Stal, L. J. (1996) Fermentation and sulfur reduction in the Mat-building cyanobacterium Microcoleus chthonoplas- tes. Appl. Environ. Microbiol. 62, 1752–1758 3. Hoffmeister, M., van der Klei, A., Rotte, C., van Grinsven, K. W., van Hellemond, J. J., Henze, K., Tielens, A. G., and Martin, W. (2004) Euglena gracilis rhodoquinone:ubiquinone ratio and mitochondrial proteome differ under aerobic and anaerobic conditions. J. Biol. Chem. 279, 22422–22429 4. Müller, M., Mentel, M., van Hellemond, J. J., Henze, K., Woehle, C., Gould, S. B., Yu, R. Y., van der Giezen, M., Tielens, A. G., and Martin, W. F. (2012) Biochemistry and evolution of anaerobic energy metabolism in eu- karyotes. Microbiol. Mol. Biol. Rev. 76, 444–495 5. Stal, L. J., and Moezelaar, R. (1997) Fermentation in cyanobacteria. FEMS Microbiol. Rev. 21, 179–211 Electron Microscopy—For negative staining: 5-l drops of the protein suspension were placed directly on glow discharged carbon coated grids (EMS) for 3 min. The grids were then washed with two drops of 2% uranyl acetate in water and stained with a third drop for 1 min. The grids were dried on filter paper and the samples were analyzed using a Tecnai 200KV (operated at 120 kV) electron microscope (FEI). Digital acquisitions were made with a numeric camera (Eagle, FEI). For morphology, in preparation for high-pressure freezing, aliquots of the liquid cultures were transferred to 50-ml conical centri- fuge tubes, spun at 500  g for 5 min, and then gently resus- pended in the growth medium containing 150 mM mannitol (66). Subsequently the cells were pelleted, high pressure frozen, freeze substituted, and embedded in LR White resin (hard grade), according to Ref. 67. Ultrathin sections were prepared with an ultracryomicrotome (EM UC7 Leica). 6. Kreuzberg, K. (1984) Starch fermentation via a formate producing path- way in Chlamydomonas reinhardtii, Chlorogonium elongatum and Chlo- rella fusca. Physiol. Plant 61, 87–94 7. Gfeller, R. P., and Gibbs, M. (1984) Fermentative metabolism of Chlamy- domonas reinhardtii: I. Analysis of fermentative products from starch in dark and light. Plant Physiol. 75, 212–218 8. Kreuzberg, K., Klock, G., and Grobheiser, D. (1987) Subcellular distribu- tion of pyruvate-degrading enzymes in Chlamydomonas reinhardtii stud- ied by an improved protoplast fractionation procedure. Physiol. Plant 69, 481–488 9. Maione, T. Author Contributions—A. A., R. V. L., and D. D. designed the research. A. A., R. V. L., and M. P. performed the research. R. V. L. and W. N. phylogenetic analyses. Y. C. carried out the proteomic analyses. A. K. performed electron microscopy. A. A. and R. V. L. wrote the article with contributions from all the authors. Chloroplast Aldehyde/Alcohol Dehydrogenase After electrophoresis, proteins were either stained with Coomassie Blue R250 or with Ponceau S after transfer onto nitrocellulose membranes. Expression and Purification of C. reinhardtii ADHE—The coding region of C. reinhardtii ADHE was amplified using the following pair of primers: CrADHE_NdeI gaccatatggccgctgc- cccggccaccc (61AAAPAT66) and CrADHE_XhoI gtcctcgag- GTTGATCTTGGAGAAGAACTC (948EFFSKIN954) using as a template the full-length cDNA (CAF04128). The amplified fragment was cloned into the pET-24a expression vector (Novagen) using the XhoI and NdeI restriction sites within the multiple cloning site to incorporate a C-terminal His6 tag. The sequence of the clone pET24a-CrADHE was confirmed at GATC Biotech. E. coli BL21 (DE3) cells were transformed with this construct. Transformed cells from plates were inoculated in the autoinduction medium ZYM2052 (65) and grown over- night at 37 °C. The cells were harvested, washed once in buffer 1 (300 mM NaCl, 50 mM sodium phosphate, pH 8.0) and frozen. Purification of ADHE was performed the same day at 4 °C under argon. The cells were resuspended in buffer 1 supple- mented with 0.5 mg/ml lysozyme, 0.5 mg/ml DNase, and 2 mM MgCl2 and protease inhibitors (PMSF, amino caproic acid, and benzamidine) and then broken by three cycles of freezing (liq- uid nitrogen) and thawing. The broken cells were centrifuged at 10,000  g for 15 min at 4 °C. The supernatant was collected and gently mixed with HIS-Select nickel affinity gel (Sigma- Immunoblotting experiments were carried out following a standard protocol at room temperature. Nitrocellulose mem- branes were first blocked for 1 h in 20 mM Tris, 300 mM NaCl, pH 7.5, supplemented with 0.1% Tween 20 before incubation with primary antibodies for 1 h. The primary antibodies were from various sources. From Agrisera AB (Vännäs, Sweden) were purchased antibodies against ADGP (AS11 1739), ATPC (AS08 312), CAH3 (AS05073), HydA (AS09514), PDC FEBRUARY 10, 2017•VOLUME 292•NUMBER 6 2407 JOURNAL OF BIOLOGICAL CHEMISTRY 2407 FEBRUARY 10, 2017•VOLUME 292•NUMBER 6 Chloroplast Aldehyde/Alcohol Dehydrogenase Aldrich). The mixture was then poured into an empty column. The gel was extensively washed with 10 mM imidazole in buffer 1. The His-tagged ADHE was eluted with 100 mM imidazole in buffer 1, quickly desalted on a PD10 column pre-equilibrated with 50 mM Tricine, pH 8.0, and finally concentrated on a Vivaspin 30 (cut off 30 kDa) (GE Healthcare) to reach a final concentration of 5–7 mg protein/ml. Acknowledgments—We thank are due to Dr. Göran Samuelsson (Umeå University) for providing strain cia3, Dr. Joanna Porankie- wicz-Asplund (Agrisera) for several useful insights regarding the anti- bodies, Sabeeha Merchant (UCLA) for the antibodies to ZCP2 and discussions on zinc deficiency at the early stage of this work, Sandrine Bujaldon (IBPC) for various discussions around the strains and for fluorescence measurements, and Jean-François Sassi (Cité des Ener- gies, CEA-Cadarache) for the cultures in 2% CO2. Enzyme Assays—Freshly prepared ADHE was tested for the different enzymatic activities, at 25 °C. Standard assay medium for NADH-dependent reactions consisted of 50 mM potassium phosphate (pH 7.0) and 0.4 2 mM NADH. Acetyl-CoA reduc- tase activity was determined in the presence of 0.21 mM acetyl- CoA; acetaldehyde reductase was determined with 1 mM acet- aldehyde and 0.21 mM CoASH. The rate of both reductase reactions were monitored spectrophotometrically following the disappearance of NADH at 340 nm. Standard assay medium for NAD-dependent reactions contained 1.5 mM NAD in 50 mM glycine/NaOH buffer (pH 9.0). Ethanol dehydrogenase activity was assayed in 170 mM ethanol (1% v/v); acetaldehyde dehydrogenase activity was assayed in 1 mM acetaldehyde and 0.2 mM CoASH. The rates of both dehydrogenases were moni- tored by the formation of NADH at 340 nm. All reactions were started by the addition of 25–40 g of purified enzyme. In all the assays, one unit of enzyme activity was defined as 1 mol of NADH converted per min. Chloroplast Aldehyde/Alcohol Dehydrogenase I., Finazzi, G., Casero, D., Loo, J. A., Pellegrini, M., Wollman, F. A., and Merchant, S. S. (2013) Zinc deficiency impacts CO2 assimilation and disrupts copper homeostasis in Chlamy- domonas reinhardtii. J. Biol. Chem. 288, 10672–10683 26. Adl, S. M., Simpson, A. G., Lane, C. E., Lukesˇ, J., Bass, D., Bowser, S. S., Brown, M. W., Burki, F., Dunthorn, M., Hampl, V., Heiss, A., Hoppenrath, M., Lara, E., Le Gall, L., Lynn, D. H., et al. (2012) The revised classification of eukaryotes. J. Eukaryot. Microbiol. 59, 429–493 44. Wang, Y., Duanmu, D., and Spalding, M. H. (2011) Carbon dioxide con- centrating mechanism in Chlamydomonas reinhardtii: inorganic carbon transport and CO2 recapture. Photosynth. Res. 109, 115–122 45. Moroney, J. V., Husic, H. D., Tolbert, N. E., Kitayama, M., Manuel, L. J., and Togasaki, R. K. (1989) Isolation and characterization of a mutant of Chlamydomonas reinhardtii deficient in the CO2 concentrating mecha- nism. Plant Physiol. 89, 897–903 27. Atteia, A., van Lis, R., Mendoza-Hernández, G., Henze, K., Martin, W., Riveros-Rosas, H., and González-Halphen, D. (2003) Bifunctional alde- hyde/alcohol dehydrogenase (ADHE) in chlorophyte algal mitochondria. Plant Mol. Biol. 53, 175–188 46. Fukuzawa, H., Miura, K., Ishizaki, K., Kucho, K. I., Saito, T., Kohinata, T., and Ohyama, K. (2001) Ccm1, a regulatory gene controlling the induction of a carbon-concentrating mechanism in Chlamydomonas reinhardtii by sensing CO2 availability. Proc. Natl. Acad. Sci. U.S.A. 98, 5347–5352 28. Bruchhaus, I., and Tannich, E. (1994) Purification and molecular charac- terization of the NAD-dependent acetaldehyde/alcohol dehydrogenase from Entamoeba histolytica. Biochem. J. 303, 743–748 29. Yang, W., Li, E., Kairong, T., and Stanley, S. L., Jr. (1994) Entamoeba histolytica has an alcohol dehydrogenase homologous to the multifunc- tional adhE gene product of Escherichia coli. Mol. Biochem. Parasitol. 64, 253–260 47. Karlsson, J., Clarke, A. K., Chen, Z. Y., Hugghins, S. Y., Park, Y. I., Husic, H. D., Moroney, J. V., and Samuelsson, G. (1998) A novel -type carbonic anhydrase associated with the thylakoid membrane in Chlamydomonas reinhardtii is required for growth at ambient CO2. EMBO J. 17, 1208–1216 30. Sánchez, L. B. (1998) Aldehyde dehydrogenase (CoA-acetylating) and the mechanism of ethanol formation in the amitochondriate protist, Giardia lamblia. Arch. Biochem. Biophys. 354, 57–64 48. Johnson, X., Wostrikoff, K., Finazzi, G., Kuras, R., Schwarz, C., Bujaldon, S., Nickelsen, J., Stern, D. B., Wollman, F. A., and Vallon, O. Chloroplast Aldehyde/Alcohol Dehydrogenase 16. Hemschemeier, A., Jacobs, J., and Happe, T. (2008) Biochemical and phys- iological characterization of the pyruvate formate-lyase Pfl1 of Chlamy- domonas reinhardtii, a typically bacterial enzyme in a eukaryotic alga. Eukaryot. Cell 7, 518–526 33. Terashima, M., Specht, M., Naumann, B., and Hippler, M. (2010) Charac- terizing the anaerobic response of Chlamydomonas reinhardtii by quan- titative proteomics. Mol. Cell. Proteomics 9, 1514–1532 34. Boxma, B., Voncken, F., Jannink, S., van Alen, T., Akhmanova, A., van Weelden, S. W., van Hellemond, J. J., Ricard, G., Huynen, M., Tielens, A. G., and Hackstein, J. H. (2004) The anaerobic chytridiomycete fungus Piromyces sp. E2 produces ethanol via pyruvate:formate lyase and an al- cohol dehydrogenase E. Mol. Microbiol. 51, 1389–1399 17. Silakov, A., Kamp, C., Reijerse, E., Happe, T., and Lubitz, W. (2009) Spec- troelectrochemical characterization of the active site of the [FeFe] hydro- genase HydA1 from Chlamydomonas reinhardtii. Biochemistry 48, 7780–7786 35. Kawata, T., Masuda, K., and Yoshino, K. (1975) Presence of fine spirals (spirosomes) in Lactobacillus fermenti and Lactobacillus casei. Jpn. J. Mi- crobiol. 19, 225–227 18. van Lis, R., Baffert, C., Couté, Y., Nitschke, W., and Atteia, A. (2013) Chlamydomonas reinhardtii chloroplasts contain a homodimeric pyru- vate:ferredoxin oxidoreductase that functions with FDX1. Plant Physiol. 161, 57–71 36. Kessler, D., Leibrecht, I., and Knappe, J. (1991) Pyruvate-formate-lyase- deactivase and acetyl-CoA reductase activities of Escherichia coli reside on a polymeric protein particle encoded by adhE. FEBS Lett. 281, 59–63 19. Noth, J., Krawietz, D., Hemschemeier, A., and Happe, T. (2013) Pyruvate: ferredoxin oxidoreductase is coupled to light-independent hydrogen pro- duction in Chlamydomonas reinhardtii. J. Biol. Chem. 288, 4368–4377 37. Laurenceau, R., Krasteva, P. V., Diallo, A., Ouarti, S., Duchateau, M., Ma- losse, C., Chamot-Rooke, J., and Fronzes, R. (2015) Conserved Streptococ- cus pneumoniae spirosomes suggest a single type of transformation pilus in competence. PLoS Pathog. 11, e1004835 20. Dubini, A., Mus, F., Seibert, M., Grossman, A. R., and Posewitz, M. C. (2009) Flexibility in anaerobic metabolism as revealed in a mutant of Chla- mydomonas reinhardtii lacking hydrogenase activity. J. Biol. Chem. 284, 7201–7213 38. Hsieh, S. I., Castruita, M., Malasarn, D., Urzica, E., Erde, J., Page, M. D., Yamasaki, H., Casero, D., Pellegrini, M., Merchant, S. S., and Loo, J. A. (2013) The proteome of copper, iron, zinc, and manganese micronutrient deficiency in Chlamydomonas reinhardtii. Mol. Cell. Proteomics 12, 65–86 21. Philipps, G., Krawietz, D., Hemschemeier, A., and Happe, T. Chloroplast Aldehyde/Alcohol Dehydrogenase (2011) A pyruvate formate lyase-deficient Chlamydomonas reinhardtii strain pro- vides evidence for a link between fermentation and hydrogen production in green algae. Plant J. 66, 330–340 39. Ball, S. G., Dirick, L., Decq, A., Martiat, J. C., and Matagne, R. F. (1990) Physiology of starch storage in the monocellular alga Chlamydomonas reinhardtii. Plant Sci. 66, 1–9 22. Magneschi, L., Catalanotti, C., Subramanian, V., Dubini, A., Yang, W., Mus, F., Posewitz, M. C., Seibert, M., Perata, P., and Grossman, A. R. (2012) A mutant in the ADH1 gene of Chlamydomonas reinhardtii elicits metabolic restructuring during anaerobiosis. Plant Physiol. 158, 1293–1305 40. Schmöllinger, S., Mühlhaus, T., Boyle, N. R., Blaby, I. K., Casero, D., Met- tler, T., Moseley, J. L., Kropat, J., Sommer, F., Strenkert, D., Hemme, D., Pellegrini, M., Grossman, A. R., Stitt, M., Schroda, M., et al. (2014) Nitro- gen-sparing mechanisms in Chlamydomonas affect the transcriptome, the proteome, and photosynthetic metabolism. Plant Cell 26, 1410–1435 23. Catalanotti, C., Dubini, A., Subramanian, V., Yang, W., Magneschi, L., Mus, F., Seibert, M., Posewitz, M. C., and Grossman, A. R. (2012) Altered fermentative metabolism in Chlamydomonas reinhardtii mutants lacking pyruvate formate lyase and both pyruvate formate lyase and alcohol dehy- drogenase. Plant Cell 24, 692–707 41. Valledor, L., Furuhashi, T., Recuenco-Muñoz, L., Wienkoop, S., and Weckwerth, W. (2014) System-level network analysis of nitrogen starva- tion and recovery in Chlamydomonas reinhardtii reveals potential new targets for increased lipid accumulation. Biotechnol. Biofuels 7, 171 24. Yang, W., Catalanotti, C., D’Adamo, S., Wittkopp, T. M., Ingram-Smith, C. J., Mackinder, L., Miller, T. E., Heuberger, A. L., Peers, G., Smith, K. S., Jonikas, M. C., Grossman, A. R., and Posewitz, M. C. (2014) Alternative acetate production pathways in Chlamydomonas reinhardtii during dark anoxia and the dominant role of chloroplasts in fermentative acetate pro- duction. Plant Cell 26, 4499–4518 42. Zabawinski, C., Van Den Koornhuyse, N., D’Hulst, C., Schlichting, R., Giersch, C., Delrue, B., Lacroix, J. M., Preiss, J., and Ball, S. (2001) Starch- less mutants of Chlamydomonas reinhardtii lack the small subunit of a heterotetrameric ADP-glucose pyrophosphorylase. J. Bacteriol. 183, 1069–1077 25. Burgess, S. J., Taha, H., Yeoman, J. A., Iamshanova, O., Chan, K. X., Boehm, M., Behrends, V., Bundy, J. G., Bialek, W., Murray, J. W., and Nixon, P. J. (2016) Identification of the elusive pyruvate reductase of Chla- mydomonas reinhardtii chloroplasts. Plant Cell Physiol. 57, 82–94 43. Malasarn, D., Kropat, J., Hsieh, S. References E., and Gibbs, M. (1986) Hydrogenase-mediated activities in isolated chloroplasts of Chlamydomonas reinhardii. Plant Physiol. 80, 360–363 10. Merchant, S. S., Prochnik, S. E., Vallon, O., Harris, E. H., Karpowicz, S. J., Witman, G. B., Terry, A., Salamov, A., Fritz-Laylin, L. K., Maréchal-Dr- ouard, L., Marshall, W. F., Qu, L. H., Nelson, D. R., Sanderfoot, A. A., Spalding, M. H., et al. (2007) The Chlamydomonas genome reveals the evolution of key animal and plant functions. Science 318, 245–250 Bioinformatic and Phylogenetic Analyses—Sequence align- ments were done with the Muscle module as part of the MEGA 6 program (68) and manually adjusted to optimize alignments. The maximum likelihood phylogenetic tree was also produced using the MEGA 6 program. Conserved domains in CrADHE were identified using the NCBI-CDD database. Iron-binding signatures were identified using Prosite, a database of protein domains, families, and functional sites. Protein quantification was done on Western blots using ImageJ. Km values were cal- culated with the help of the program Hyper32 for hyperbolic regression analysis. 11. Blanc, G., Duncan, G., Agarkova, I., Borodovsky, M., Gurnon, J., Kuo, A., Lindquist, E., Lucas, S., Pangilinan, J., Polle, J., Salamov, A., Terry, A., Yamada, T., Dunigan, D. D., Grigoriev, I. V., et al. (2010) The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevo- lution with viruses, and cryptic sex. Plant Cell 22, 2943–2955 12. Atteia, A., van Lis, R., Gelius-Dietrich, G., Adrait, A., Garin, J., Joyard, J., Rolland, N., and Martin, W. (2006) Pyruvate formate-lyase and a novel route of eukaryotic ATP-synthesis in Chlamydomonas mitochondria. J. Biol. Chem. 281, 9909–9918 13. Mus, F., Dubini, A., Seibert, M., Posewitz, M. C., and Grossman, A. R. (2007) Anaerobic acclimation in Chlamydomonas reinhardtii: anoxic gene expression, hydrogenase induction, and metabolic pathways. J. Biol. Chem. 282, 25475–25486 14. Atteia, A., van Lis, R., Tielens, A. G., and Martin, W. F. (2013) Anaerobic energy metabolism in unicellular photosynthetic eukaryotes. Biochim. Biophys. Acta 1827, 210–223 15. Happe, T., and Naber, J. D. (1993) Isolation, characterization and N-ter- minal amino acid sequence of hydrogenase from the green alga Chlamy- domonas reinhardtii. Eur. J. Biochem. 214, 475–481 VOLUME 292•NUMBER 6•FEBRUARY 10, 2017 2408 JOURNAL OF BIOLOGICAL CHEMISTRY VOLUME 292•NUMBER 6•FEBRUARY 10, 2017 FEBRUARY 10, 2017•VOLUME 292•NUMBER 6 FEBRUARY 10, 2017•VOLUME 292•NUMBER 6 Chloroplast Aldehyde/Alcohol Dehydrogenase Consensus target sequence between propanediol oxidoreductase of Escherichia coli and alcohol dehydrogenase II of Zy- momonas mobilis. J. Biol. Chem. 269, 6592–6597 64. Durrant, I. (1990) Light-based detection of biomolecules. Nature 346, 297–298 54. Leonardo, M. R., Cunningham, P. R., and Clark, D. P. (1993) Anaerobic regulation of the adhE gene, encoding the fermentative alcohol dehydro- genase of Escherichia coli. J. Bacteriol. 175, 870–878 65. Studier, F. W. (2005) Protein production by auto-induction in high-den- sity shaking cultures. Protein Expr. Purif. 41, 207–234 66. O’Toole, E. T. (2010) Chlamydomonas cryopreparation methods for the 3-D analysis of cellular organelles. Methods Cell Biol. 96, 71–91 55. Pagels, M., Fuchs, S., Pané-Farré, J., Kohler, C., Menschner, L., Hecker, M., McNamarra, P. J., Bauer, M. C., von Wachenfeldt, C., Liebeke, M., Lalk, M., Sander, G., von Eiff, C., Proctor, R. A., and Engelmann, S. (2010) Redox sensing by a Rex-family repressor is involved in the regulation of anaerobic gene expression in Staphylococcus aureus. Mol. Microbiol. 76, 1142–1161 67. McDonald, K. L. (2014) Rapid embedding methods into epoxy and LR White resins for morphological and immunological analysis of cryofixed biological specimens. Microsc. Microanal. 20, 152–163 68. Tamura, K., Stecher, G., Peterson, D., Filipski, A., and Kumar, S. (2013) MEGA6: molecular evolutionary genetics analysis version 6.0. Mol. Biol. Evol. 30, 2725–2729 56. Steunou, A. S., Bhaya, D., Bateson, M. M., Melendrez, M. C., Ward, D. M., Brecht, E., Peters, J. W., Kühl, M., and Grossman, A. R. (2006) In situ analysis of nitrogen fixation and metabolic switching in unicellular ther- mophilic cyanobacteria inhabiting hot spring microbial mats. Proc. Natl. Acad. Sci. U.S.A. 103, 2398–2403 69. Montella, C., Bellsolell, L., Pérez-Luque, R., Badía, J., Baldoma, L., Coll, M., and Aguilar, J. (2005) Crystal structure of an iron-dependent group III dehydrogenase that interconverts L-lactaldehyde and L-1,2-propanediol in Escherichia coli. J. Bacteriol. 187, 4957–4966 57. Beckham, K. S., Connolly, J. P., Ritchie, J. M., Wang, D., Gawthorne, J. A., Tahoun, A., Gally, D. L., Burgess, K., Burchmore, R. J., Smith, B. O., Beat- son, S. A., Byron, O., Wolfe, A. J., Douce, G. R., and Roe, A. J. (2014) The metabolic enzyme AdhE controls the virulence of Escherichia coli O157: H7. Mol. Microbiol. 93, 199–211 Escherichia coli. J. Bacteriol. 187, 4957–4966 70. Zheng, T., Olson, D. G., Tian, L., Bomble, Y. J., Himmel, M. E., Lo, J., Hon, S., Shaw, A. J., van Dijken, J. P., and Lynd, L. Chloroplast Aldehyde/Alcohol Dehydrogenase to the ribosome: a unique moonlighting action revealed. Sci. Rep. 6, 19936 5-mediated cyclic electron flow under ATP- or redox-limited conditions: a study of ATpase pgr5 and rbcL pgr5 mutants in the green alga Chla- mydomonas reinhardtii. Plant Physiol. 165, 438–452 5-mediated cyclic electron flow under ATP- or redox-limited conditions: a study of ATpase pgr5 and rbcL pgr5 mutants in the green alga Chla- mydomonas reinhardtii. Plant Physiol. 165, 438–452 59. Harris, E. (1989) The Chlamydomonas Sourcebook: A Comprehensive Guide to Biology and Laboratory Use, Academic Press, San Diego, CA 50. Kucho, K., Yoshioka, S., Taniguchi, F., Ohyama, K., and Fukuzawa, H. (2003) cis-Acting elements and DNA-binding proteins involved in CO2- responsive transcriptional activation of Cah1 encoding a periplasmic car- bonic anhydrase in Chlamydomonas reinhardtii. Plant Physiol. 133, 783–793 60. van Lis, R., Atteia, A., Nogaj, L. A., and Beale, S. I. (2005) Subcellular localization and light-regulated expression of protoporphyrinogen IX ox- idase and ferrochelatase in Chlamydomonas reinhardtii. Plant Physiol. 139, 1946–1958 51. Keeling, P. J. (2010) The endosymbiotic origin, diversification and fate of plastids. Philos. Trans. R. Soc. Lond. B Biol. Sci. 365, 729–748 61. Goodstein, D. M., Shu, S., Howson, R., Neupane, R., Hayes, R. D., Fazo, J., Mitros, T., Dirks, W., Hellsten, U., Putnam, N., and Rokhsar, D. S. (2012) Phytozome: a comparative platform for green plant genomics. Nucleic Acids Res. 40, D1178–D1186 52. Dagan, T., Roettger, M., Stucken, K., Landan, G., Koch, R., Major, P., Gould, S. B., Goremykin, V. V., Rippka, R., Tandeau de Marsac, N., Gug- ger, M., Lockhart, P. J., Allen, J. F., Brune, I., Maus, I., et al. (2013) Genomes of stigonematalean cyanobacteria (subsection V) and the evolution of ox- ygenic photosynthesis from prokaryotes to plastids. Genome Biol. Evol. 5, 31–44 62. Dupierris, V., Masselon, C., Court, M., Kieffer-Jaquinod, S., and Bruley, C. (2009) A toolbox for validation of mass spectrometry peptides identifica- 62. Dupierris, V., Masselon, C., Court, M., Kieffer-Jaquinod, S., and Bruley, C. (2009) A toolbox for validation of mass spectrometry peptides identifica- tion and generation of database: IRMa. Bioinformatics. 25, 1980–1981 tion and generation of database: IRMa. Bioinformatics. 25, 1980–1981 63. Wessel, D., and Flügge, U. I. (1984) A method for the quantitative recovery of protein in dilute solution in the presence of detergents and lipids. Anal. Biochem. 138, 141–143 53. Cabiscol, E., Aguilar, J., and Ros, J. (1994) Metal-catalyzed oxidation of Fe2 dehydrogenases. Chloroplast Aldehyde/Alcohol Dehydrogenase (2010) MRL1, a conserved pentatricopeptide repeat protein, is required for stabilization of rbcL mRNA in Chlamydomonas and Arabidopsis. Plant Cell 22, 234–248 31. Spreitzer, R. J., and Mets, L. J. (1980) Non-Mendelian mutation affecting ribulose-1,5-biphosphate carboxylase structure and activity. Nature 285, 114–115 32. Dron, M., Rahire, M., Rochaix, J. D., and Mets, L. (1983) First DNA se- quence of a chloroplast mutation: a missense alteration in the ribulose biphosphate carboxylase large subunit gene. Plasmid 9, 321–324 49. Johnson, X., Steinbeck, J., Dent, R. M., Takahashi, H., Richaud, P., Ozawa, S., Houille-Vernes, L., Petroutsos, D., Rappaport, F., Grossman, A. R., Niyogi, K. K., Hippler, M., and Alric, J. (2014) Proton gradient regulation FEBRUARY 10, 2017•VOLUME 292•NUMBER 6 2409 JOURNAL OF BIOLOGICAL CHEMISTRY 5-mediated cyclic electron flow under ATP- or redox-limited conditions: a study of ATpase pgr5 and rbcL pgr5 mutants in the green alga Chla- mydomonas reinhardtii. Plant Physiol. 165, 438–452 Chloroplast Aldehyde/Alcohol Dehydrogenase Chloroplast Aldehyde/Alcohol Dehydrogenase R. (2015) Cofactor specificity of the bifunctional alcohol and aldehyde dehydrogenase (AdhE) in wild- type and mutant Clostridium thermocellum and Thermoanaerobacterium saccharolyticum. J. Bacteriol. 197, 2610–2619 58. Shasmal, M., Dey, S., Shaikh, T. R., Bhakta, S., and Sengupta, J. (2016) E. coli metabolic protein aldehyde-alcohol dehydrogenase-E binds VOLUME 292•NUMBER 6•FEBRUARY 10, 2017 VOLUME 292•NUMBER 6•FEBRUARY 10, 2017 2410 JOURNAL OF BIOLOGICAL CHEMISTRY 2410
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Enhancing Data-Awareness of Object-Centric Event Logs
Lecture notes in business information processing
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1 Leuven Institute for Research on Information Systems (LIRIS), KU Leuven, Leuven, Belgium {alexandre.goossens,johannes.smedt,jan.vanthienen}@kuleuven.be 2 2 Process and Data Science (PADS) Chair, RWTH Aachen University, Aachen, Germany wvdaalst@pads.rwth-aachen.de Abstract. When multiple objects are involved in a process, there is an opportunity for processes to be discovered from different angles with new information that previously might not have been analyzed from a single object point of view. This does require that all the information of event/object attributes and their values are stored within logs including attributes that have a list of values or attributes with values that change over time. It also requires that attributes can unambiguously be linked to an object, an event or both. As such, object-centric event logs are an interesting development in process mining as they support the presence of multiple types of objects. First, this paper shows that the current object- centric event log formats do not support the aforementioned aspects to their full potential since the possibility to support dynamic object attributes (attributes with changing values) is not supported by existing formats. Next, this paper introduces a novel enriched object-centric event log format tackling the aforementioned issues alongside an algorithm that automatically translates XES logs to this Data-aware OCEL (DOCEL) format. Keywords: Object-centric event logs · Process mining · Decision mining This work was supported by the Fund for Scientific Research Flanders (project G079519N) and KU Leuven Internal Funds (project C14/19/082). c ⃝The Author(s) 2023 M. Montali et al. (Eds.): ICPM 2022 Workshops, LNBIP 468, pp. 18–30, 2023. https://doi.org/10.1007/978-3-031-27815-0 2 This work was supported by the Fund for Scientific Research Flanders (project G079519N) and KU Leuven Internal Funds (project C14/19/082). c ⃝The Author(s) 2023 M. Montali et al. (Eds.): ICPM 2022 Workshops, LNBIP 468, pp. 18–30, 2023. https://doi.org/10.1007/978-3-031-27815-0_2 Alexandre Goossens1(B) , Johannes De Smedt1 , Jan Vanthienen1 , and Wil M. P. van der Aalst2 Alexandre Goossens1(B) , Johannes De Smedt1 , Jan Vanthienen1 , and Wil M. P. van der Aalst2 Alexandre Goossens1(B) , Johannes De Smedt1 , Jan Vanthienen1 , and Wil M. P. van der Aalst2 Alexandre Goossens1(B) , Johannes De Smedt1 , Jan Vanthienen1 , and Wil M. P. van der Aalst2 1 Leuven Institute for Research on Information Systems (LIRIS), KU Leuven Leuven, Belgium 1 Leuven Institute for Research on Information Systems (LIRIS), KU Leuven, Leuven, Belgium 1 Introduction In the last few years, object-centric event logs have been proposed as the next step forward in event log representation. The drive behind this is the fact that the eXtensible Event Stream (XES) standard [15] with a single case notion does not allow capturing reality adequately [14]. A more realistic assumption instead is to view a process as a sequence of events that interact with several objects. Several Enhancing Data-Awareness of Object-Centric Event Logs 19 object-centric event log representations have been proposed such as eXtensi- ble Object-Centric (XOC) event logs [18], Object-Centric Behavioral Constraint model (OCBC) [4], and most recently Object-Centric Event Logs (OCEL) [14]. The first two event log representations face scalability issues related to the stor- age of an object model with each event or to the duplication of attributes [14]. However, there is a difficult trade-offto be made between expressiveness and sim- plicity, leaving the recent OCEL proposal as the most suitable for object-centric process mining as it strikes a good balance between storing objects, attributes and their relationships and yet keeping everything simple. OCEL offers interesting new research opportunities not only for process min- ing with, e.g., object-centric Petri nets [1] or object-centric predictive analysis [11], but also for decision mining [16]. OCEL is already well on its way to become an established standard with a visualization tool [12], log sampling and filtering techniques [5], its own fitness and precision notions [2], its own clustering tech- nique [13], an approach to define cases and variants in object-centric event logs [3] and a method to extract OCEL logs from relational databases [23]. In this paper, attributes are considered to be logged together with events and objects in an event log and should relate clearly to their respective concepts, i.e., events, objects or both. As such, OCEL could provide more analysis opportunities by supporting attributes having several values simultaneously, allowing attributes to change values over time and to unambiguously link attributes to objects, all of which is currently not fully supported but common in object-centric models such as structural conceptual models like the Unified Modeling Language (UML) [20]. For this purpose, this paper proposes an extension to OCEL called, Data- aware OCEL or DOCEL, which allows for such dynamic object attributes. 2.1 Importance of Object Attributes in Single Case Notion Event Logs 2.1 Importance of Object Attributes in Single Case Notion Event Logs Various single case notion process mining algorithms make use of both event and case attributes, e.g., in [7], a framework is proposed to correlate, predict and cluster dynamic behavior using data-flow attributes. Both types of attributes are used to discover decision points and decision rules within a process in [17]. For predictive process monitoring, the authors of [9] develop a so-called clustering- based predictive process monitoring technique using both event and case data. Case attributes are also used to provide explanations of why a certain case prediction is made within the context of predictive process monitoring [10]. [ ] The same challenges apply to decision mining which aims to discover the reasoning and structure of decisions that drive the process based on event logs [22]. In [8], both event and case attributes are used to find attribute value shifts to discover a decision structure conforming to a control flow and in [19], these are used to discover overlapping decision rules in a business process. Lastly, within an IoT context, it has been pointed out that contextualization is not always understood in a similar fashion as process mining does [6]. As such object-centric event logs offer an opportunity for these different views of contextualization to be better captured. The previous paragraphs show (without aiming to provide an exhaustive overview) that various contributions made use of attributes that could be stored and used in a flexible manner. Unfortunately, as will be illustrated in the next subsections, the aforementioned aspects related to attribute analysis are cur- rently not fully supported in object-centric event logs. 1 Introduction The findings are illustrated through a widely-used running example for object-centric processes indicating how this standard can also support the further development of object-centric decision/process mining and other domains such as Internet of Things (IoT) related business processes. This paper also presents an algorithm to convert XES logs to DOCEL logs. Since many event logs are available in a “flat” XES format for every object involved in the process, not all information can be found in one event log. As such, providing an algorithm that merges these XES files into one DOCEL log would centralize all the information in one event log without compromising on the data flow aspects that make XES such an interesting event log format. The structure of this paper is as follows: Sect. 2 explains the problem together with a running example applied on the standard OCEL form. Section 3 intro- duces the proposed DOCEL format together with an algorithm to automatically convert XES log files into this novel DOCEL format. Next, the limitations and future work of this work are discussed in Sect. 4. Finally, Sect. 5 concludes this paper. A. Goossens et al. 20 2 Motivation The IEEE Task Force conducted a survey during the 2.0 XES workshop1 con- cluding that complex data structures, especially one-to-many or many-to-many object relationships, form a challenge for practitioners when pre-processing event logs. By including multiple objects with their own attributes, object-centric event logs have the opportunity to address these challenges. This does entail that the correct attributes must be unambiguously linked to the correct object and/or activity to correctly discover the process of each object type as well as the rel- evant decision points [1]. The next subsection discusses the importance object attribute analysis had on single case notion event logs. 1 https://icpmconference.org/2021/events/category/xes-workshop/list/?tribe-bar-da te=2021-11-02. 2 All figures are available in higher resolution using the following link. 1 https://icpmconference.org/2021/events/category/xes-workshop/list/?tribe-bar-da te=2021-11-02. 2 All figures are available in higher resolution using the following link. Enhancing Data-Awareness of Object-Centric Event Logs Enhancing Data-Awareness of Object-Centric Event Logs 21 A customer places an order with the desired quantity for Product 1,2 or 3. Next, the order is received and the order is confirmed. This creates the value attribute of order. Afterwards, the ordered products are collected from the ware- house. If a product is a fragile product, it is first wrapped with cushioning material before being added to the package. The process continues and then the shipping method needs to be determined. This is dependent on the value of the order, on whether there is a fragile product and on whether the customer has asked for a refund. If no refund is asked, this finalizes the process. The refund can only be asked once the customer has received the order and requests a refund. If that is the case, the order needs to be reshipped back and this finalizes the process. Fig. 1. BPMN model of running example Fig. 1. BPMN model of running example 2.2 Running Example Consider the following adapted example inspired from [8] of a simple order-to- delivery process with three object types: Order, Product, Customer. Figure 12 visualizes the process. 2 All figures are available in higher resolution using the following link. 2.3 OCEL Applied to the Running Example In this subsection, the standard OCEL representation visualizes a snippet of this process. Table 1 is an informal OCEL representation of events and Table 2 is an informal OCEL representation of objects. Figure 2 visualizes the meta-model of the original OCEL standard. Several observations can be made about the standard OCEL representation: A: Attributes that are stored in the events table can not unambigu- ously be linked to an object. The OCEL standard makes the assumption A. Goossens et al. 22 Table 1. Informal representation of the events in an OCEL format Table 1. Informal representation of the events in an OCEL format ID Activity Timestamp Customer Order Product Type Q1 Q2 Q3 Refund Order Value Resource Shipping Method e1 Place Order 09:00 {c1} {o1} {p1,p2} 5 2 0 0 e2 Receive Order 10:00 {o1} Jan e3 Confirm Purchase 11:00 {o1} 95 Jan e4 Collect product from warehouse 12:00 {o1} {p2} Johannes e5 Collect product from warehouse 12:00 {o1} {p1} Johannes e6 Put protection around the product 12:15 {o1} {p1} Johannes e7 Add product to package 12:30 {o1} {p1} Johannes e8 Add product to package 12:30 {o1} {p2} Johannes ID Activity Timestamp Customer Order Product Type Q1 Q2 Q3 Refund Order Value Resource Shipping Method e1 Place Order 09:00 {c1} {o1} {p1,p2} 5 2 0 0 e2 Receive Order 10:00 {o1} Jan e3 Confirm Purchase 11:00 {o1} 95 Jan e4 Collect product from warehouse 12:00 {o1} {p2} Johannes e5 Collect product from warehouse 12:00 {o1} {p1} Johannes e6 Put protection around the product 12:15 {o1} {p1} Johannes e7 Add product to package 12:30 {o1} {p1} Johannes e8 Add product to package 12:30 {o1} {p2} Johannes ID Activity Timestamp Customer Order Product Type Q1 Q2 Q3 Refund Order Value Resource Shipping Method e1 Place Order 09:00 {c1} {o1} {p1,p2} 5 2 0 0 e2 Receive Order 10:00 {o1} Jan e3 Confirm Purchase 11:00 {o1} 95 Jan e4 Collect product from warehouse 12:00 {o1} {p2} Johannes e5 Collect product from warehouse 12:00 {o1} {p1} Johannes e6 Put protection around the product 12:15 {o1} {p1} Johannes e7 Add product to package 12:30 {o1} {p1} Johannes e8 Add product to package 12:30 {o1} {p2} Johannes Table 2. 2.3 OCEL Applied to the Running Example Informal representation of the objects in an OCEL format ID Type Name Bank account Value Fragile c1 Customer Elien BE24 5248 54879 2659 o1 Order p1 Product 15 1 p2 Product 10 0 p3 Product 20 1 that attributes that are stored in the events table can only be linked to an event. This assumption was taken for its clear choice of simplicity and it holds in this running example, which has straightforward attributes relationships and no changing product values over time. Even though the given example is very obvious regarding how the attributes relate to the objects given the attribute names, this is not always the case. If the value of a product could change over time, the product value attributes would have to be added to the events table but then there would be 4 attributes storing values, i.e., order value, product 1 value, product 2 value and product 3 value. Knowing which attribute is linked to which object would then require domain knowledge as it is not explicitly made clear in the events table. As such, this can be an issue in the future for generic OCEL process discovery or process conformance algorithms since prior to running such an algorithm, the user would have to specify how attributes and objects are related to one another. B: Based on the OCEL metamodel (Fig. 2), it is unclear whether attributes can only be linked to an event or an object individually or whether an attribute can be linked to both an event and an object simultaneously. Since the OCEL standard did not intend for attribute val- ues to be shared between events and objects by design to keep things compact and clear and since the OCEL UML model (Fig. 2) can not enforce the latter, Object-Constraint Language (OCL) constraints would have made things clearer. Therefore, it might be beneficial to support the possibility to track an attribute change, e.g., the refund attribute of object Order can change from 0 to 1 and back to 0 across the process. C: Attributes can only contain exactly one value at a time accord- ing to the OCEL metamodel (see Fig. 2). This observation entails two aspects. First, it is unclear, based on the metamodel of Fig. 2, whether an Enhancing Data-Awareness of Object-Centric Event Logs 23 attribute can contain a list of values. 2.3 OCEL Applied to the Running Example It is not difficult to imagine situations with a list of values, e.g., customers with multiple bank accounts or emails, products can have more than one color. Currently, OCEL supports multiple val- ues by creating a separate column for each value in the object or event table. This means that each value is treated as a distinct attribute , e.g., in the run- ning example, a customer orders a quantity of product 1, 2 and 3. This can be considered as 1 attribute with 3 values. However, in Table 1, the columns Q1, Q2 and Q3 are considered to be separate attributes even though they could be con- sidered as being from the same overarching attribute Quantity. Secondly, even if an attribute only has 1 value at a time, its value could change over time as well. Such an attribute can be considered to have multiple values at different points in time. If a value were to change, currently, one would have to create a new object for each attribute change. Unfortunately, this only works to some degree since there are no object-to-object references (only through events) in the standard OCEL format. Another possibility would require to unambiguously track the value of an attribute of an object to a certain event that created it. This is also valid within an IoT context with sensors having multiple measurements of the same attributes over time. As such, the first three observations clearly go hand in hand. D: Both the event and object tables seem to contain a lot of columns that are not always required for each event or object. When looking at the events table, attribute Order Value is only filled once with event ‘confirm purchase’ when it is set for order 1. One could either duplicate this value for all the next events dealing with order 1 or one could simply keep it empty. Therefore, in a big event log with multiple traces one could expect a lot of zero padding or duplication of values across events. Even though this issue is not necessarily present in a storage format, it still shows that ambiguity about attribute relationships might lead to wrongly stored attributes without domain knowledge. Fig. 2. OCEL UML model from [14] Fig. 3. DOCEL UML model Fig. 3. DOCEL UML model Fig. 2. OCEL UML model from [14] Fig. 3. DOCEL UML model Fig. 2. 3.1 DOCEL UML Metamodel To formally introduce the DOCEL standard, a UML class diagram is mod- eled (Figure 3). UML diagrams clearly formalize how all concepts relate to one another in OCEL or DOCEL. Based on the observations from Sect. 2.3, the key differences with the UML class diagram of OCEL (Fig. 2) are indicated in color in Fig. 3 to enrich OCEL even further: 1: Attribute values can be changed and these changes can be tracked. By allowing ambiguities, domain knowledge becomes indispens- able to make sensible and logical conclusions. In the DOCEL UML model, attributes are considered to be an assignment of a value to an attribute name in a particular context event and/or object. A distinction is made between static and dynamic attributes. Static event attributes and static object attributes are assumed to be linked to an event or an object respec- tively and only contain fixed value(s). Static attributes are stored in a similar fashion as with the standard OCEL format, namely in the event or the object table, except that now each object type has an individual table to avoid hav- ing null values for irrelevant columns. On the other hand, dynamic attributes are assumed to have changing values over time. Dynamic attributes are linked to both an object and an event so that a value change of an attribute can easily be tracked. Another design choice would be to store a timestamp with the attribute value instead of linking it to the event, however, this might lead to ambiguity in case two events happened at the exact same moment. As such, this proposal tackles observation A. 2: Event attributes can unambiguously be linked to an object. This issue goes hand in hand with the previous proposal and is solved at the same time. By distinguishing between dynamic and static attributes all relations between attributes, events and objects are made clear and ambiguities have been reduced. A static attribute is either linked to an object or an event and its value(s) can not change over time. A dynamic attribute is clearly linked to the relevant object and to the event that updated its value. The DOCEL UML model (Fig. 3) can enforce that a static attribute must be linked with at least 1 event or at least 1 object since a distinction is made between static event attributes and static object attributes. A. Goossens et al. A. Goossens et al. 24 3 Data-Aware OCEL (DOCEL) Subsection 3.1 introduces the DOCEL UML metamodel. Next, Subsect. 3.2 applies DOCEL to the running example. Finally, Subsect. 3.3 introduces an algorithm to convert a set of XES files into this DOCEL format. Subsection 3.1 introduces the DOCEL UML metamodel. Next, Subsect. 3.2 applies DOCEL to the running example. Finally, Subsect. 3.3 introduces an algorithm to convert a set of XES files into this DOCEL format. 2.3 OCEL Applied to the Running Example OCEL UML model from [14] 3.1 DOCEL UML Metamodel For dynamic attributes, this issue does not apply since it needs to both connected to both an object and an event anyhow. This proposal solves both observations A & B. 3: Attributes can contain a list of values. Even though not all attributes have a list of values, supporting this certainly reflects the reality that multiple values do occur in organizations. In the DOCEL UML model (Fig. 3) the 1 Enhancing Data-Awareness of Object-Centric Event Logs 25 cardinality for Attribute Value allows both dynamic and static attributes to have complex values, e.g., lists, sets and records containing multiple values. In practice, these values are stored in the relevant attribute tables with a list of values. This proposal solves observation C. 3.2 DOCEL Applied to the Running Example Table 3 is the events table containing all the events together with their static event attributes (in green) in this case Resource. Complying with the DOCEL UML model, only static event attributes are found in this table which are solely linked to events. The main changes from the OCEL to the DOCEL tables have been highlighted using the same color scheme as in the DOCEL UML model to show where the columns have been moved to in the DOCEL tables. ble 3. Informal representation of events with static attributes in a DOCEL format Table 3. Informal representation of events with static attributes in a DOCEL format EID Activity Timestamp Customer Order Product Type Resource e1 Place Order 1/01/22 09:00 {c1} {o1} {p1,p2} e2 Receive Order 1/01/22 10:00 {c1} {o1} {p1,p2} Jan e3 Confirm Purchase 1/01/22 11:00 {o1} {p1,p2} Jan e4 Collect product from warehouse 1/01/22 12:00 {o1} {p2} Johannes e5 Collect product from warehouse 1/01/22 12:00 {o1} {p1} Johannes e6 Put protection around the product 1/01/22 12:15 {o1} {p1} Johannes e7 Add product to package 1/01/22 12:30 {o1} {p1} Johannes e8 Add product to package 1/01/22 12:30 {o1} {p2} Johannes Tables 4, 5 and 6 represent object type tables where the objects are stored. Each object is given an object ID. In this data-aware format, aligned with the UML model, a distinction is made between static attributes and dynamic attributes. Static attributes are assumed to be immutable and, therefore, the static object attributes (in blue) are stored together with the objects them- selves, e.g., customer name, product value, fragile and bank account. Notice how here, once again, the attributes can be clearly linked to an object. Table 5 only contains primary keys because its attributes are dynamic attributes in this example. Table 4. Product Type table Products PID Value Fragile p1 15 1 Table 5. Order table Orders OrderID o1 Table 4. Product Type table Products PID Value Fragile p1 15 1 Table 5. Order table Orders OrderID o1 Table 4. Product Type table Table 4. Product Type table Products PID Value Fragile p1 15 1 26 A. Goossens et al. Table 6. Customer table Customer CID Name Bank account c1 Elien BE24 5248 5487 2659 The red Tables 7, 8, 9 and 10 are dynamic attribute tables. Dynamic attributes are assumed to be mutable and its values can change over time. 3.2 DOCEL Applied to the Running Example Using two foreign keys (event ID and object ID), the attribute and its value can be traced back to the relevant object as well as the event that created it. Each attribute value is given an attribute value ID with the value(s) being stated in the following column. This complies with the proposed UML model in Fig. 3 where dynamic attributes are clearly linked to the relevant event and relevant object. Table 7. Quantity table Quantity QID Quantity EID OID q1 {5,2,0} e1 o1 Table 8. Order Value table Order Value VID Value EID OID v1 95 e3 o1 Table 9. Refund table Refund RID Refund Value EID OID r1 0 e1 o1 r2 1 e15 o1 r3 0 e24 o1 Table 10. Shipping method table Shipping method SID Method EID OID s1 courrier e11 o1 s2 express courrier e18 o1 Table 7. Quantity table Quantity QID Quantity EID OID q1 {5,2,0} e1 o1 Table 8. Order Value table Order Value VID Value EID OID v1 95 e3 o1 Table 9. Refund table Refund RID Refund Value EID OID r1 0 e1 o1 r2 1 e15 o1 r3 0 e24 o1 Table 10. Shipping method table Shipping method SID Method EID OID s1 courrier e11 o1 s2 express courrier e18 o1 Table 8. Order Value table Order Value VID Value EID OID v1 95 e3 o1 Table 10. Shipping method table Shipping method SID Method EID OID s1 courrier e11 o1 s2 express courrier e18 o1 Table 8. Order Value table Table 9. Refund table Table 9. Refund table Refund RID Refund Value EID OID r1 0 e1 o1 r2 1 e15 o1 r3 0 e24 o1 From the DOCEL log, the following things are observed: Attributes can unambiguously be linked to an object, to an event or to both an event and an object with the use of foreign keys. Attributes can have different values over time, with value changes directly tracked in the dynamic attributes tables. This means one knows when the attribute was created and for how long it was valid, e.g., refund was initialized to 0 by event 1, then event 15 set it to 1 and finally event 24 sets it back to 0. Static and dynamic attributes can contain a list of values in the relevant attributes table, e.g., attribute Quantity. The amount of information stored has only increased with foreign keys. 3.3 Automatically Converting XES Logs to DOCEL Logs Currently, research is focused on automatically converting XES logs to OCEL logs with a first proposal introduced in [21]. Automatically transforming XES logs or an OCEL log to the proposed DOCEL log would mainly require domain knowledge to correctly link all attributes to the right object, but this is also required for a normal process analysis of an OCEL log. Our algorithm can be found in Algorithm 1. This algorithm takes as input a set of XES files describing the same process and assumes that each XES file describes the process from the point of view of one object type. The main ideas of the algorithm are as follows: – Line 3 starts the algorithm by looping over all XES-logs. – Line 3 starts the algorithm by looping over all XES-logs. – Lines 4–8 create the object type tables with all their objects and static object attributes. In line 7, it is assumed that the trace attributes are not changing and solely linked to one object. Since the assumption is made that an XES file only contains one object type, these trace attributes can be considered as static object attributes belonging to that object. – Lines 10–12 require the user to identify the static event attributes and the other event attributes that can be linked to an object. Next, a new EventID is made to know from which log an event comes from. – Lines 10–12 require the user to identify the static event attributes and the other event attributes that can be linked to an object. Next, a new EventID is made to know from which log an event comes from. g – In line 15, the dynamic attributes tables are constructed under the assumption that attributes that have not yet been identified as static object attributes or static event attributes are dynamic attributes. – In line 15, the dynamic attributes tables are constructed under the assumption that attributes that have not yet been identified as static object attributes or static event attributes are dynamic attributes. – Lines 17–18 create the new chronologically ordered events Table E. – Line 20 matches the events with the relevant objects based on the dynamic attributes tables using the new EventID. It should definitely also include the object related to the original traceID related to that event. 3.2 DOCEL Applied to the Running Example Previously, the dynamic attributes would have been stored anyhow in the events table with the unfortunate side-effect of not being explicitly linked to the relevant object and with more columns in the events table. This essentially Enhancing Data-Awareness of Object-Centric Event Logs 27 is a normalization of an OCEL data format. Even though it starts resembling a relational database structure, it was decided for this DOCEL format to not include relations between objects. Deciding on whether to include object models within event logs is essentially a difficult trade-offbetween complexity/scalability and available information within the event log. From this perspective, the design choice of XOC and OCBC was mostly focused on reducing complexity [14], where we aim for an event log format that offers more information in exchange of a slightly increased complexity. As such, the DOCEL standard has decreased the amount of columns per table and thus observation D is solved as well. 3.3 Automatically Converting XES Logs to DOCEL Logs 14: Merge all el tables chronologically in E. 15: for e ∈E do 16: Find and insert all objects related to e in the relevant object type column 17: Create unique DOCELeventID 18: Update all foreign keys of linked dynamic attributes with new DOCELeventID Algorithm 1. Algorithm to go from XES logs to DOCEL logs ▷List of XES logs (l) ▷List of present object types ▷Find all objects of an object type ▷Trace attributes = static object attributes 4 Limitations and Future Work To better store information about attributes, DOCEL comes with a variable number of tables. However, the tables should be smaller as there are fewer columns compared to the standard OCEL format. It is still possible to only use certain attributes or attribute values for analysis by extracting the relevant attributes/values. Instead of selecting a subset of columns with OCEL, the user selects a subset of tables in DOCEL which offer more information. Next, neither OCEL or DOCEL include the specific roles of objects of the same object type in an event, in case of a Send Message event from person 1 to person 2, making it currently impossible to distinguish between the sender and the receiver. To further validate the DOCEL format, the authors are planning to develop a first artificial event log together with a complete formalization of the DOCEL UML with OCL constraints. Furthermore, directly extracting DOCEL logs from SAP is also planned. Regarding the algorithm to automatically convert XES logs to DOCEL logs, the authors are planning to extend the algorithm with a solu- tion to automatically discover which attributes are linked to objects or events. Secondly, an extension to create a DOCEL log based on a single XES file with multiple objects is also planned. DOCEL however offers many other research opportunities such as novel algorithms for object-centric process discovery, con- formance checking or enhancements which would further validate or improve the DOCEL format. Also other domains such as IoT-related process mining can be interesting fields to apply DOCEL on. 3.3 Automatically Converting XES Logs to DOCEL Logs – Line 20 matches the events with the relevant objects based on the dynamic attributes tables using the new EventID. It should definitely also include the object related to the original traceID related to that event. – Finally, lines 21–22 will create the final DOCEL eventIDs and update the eventID across all dynamic attribute tables. – Finally, lines 21–22 will create the final DOCEL eventIDs and update the eventID across all dynamic attribute tables. A. Goossens et al. 28 Algorithm 1. Algorithm to go from XES logs to DOCEL logs 1: L ←l ▷List of XES logs (l) 2: OT ←ot ▷List of present object types 3: for l ∈L do 4: for ot ∈(OT ∈l) do 5: Create empty object type table 6: for o ∈ot do ▷Find all objects of an object type 7: Create row with objectID and trace attributes ▷Trace attributes = static object attributes 8: for e ∈L do 9: Match event attributes to the event or to an object 10: Create newEventID with log identifier ▷To distinguish similar events of different logs 11: Create event table el with static event attributes. 12: Create dynamic attributes table with valueID, value(s) and two foreign keys {newEventID, objectID} 13: Create empty event table E with a column for every object type. 14: Merge all el tables chronologically in E. 15: for e ∈E do 16: Find and insert all objects related to e in the relevant object type column 17: Create unique DOCELeventID 18: Update all foreign keys of linked dynamic attributes with new DOCELeventID Algorithm 1. Algorithm to go from XES logs to DOCEL logs 1: L ←l ▷List of XES logs (l) 2: OT ←ot ▷List of present object types 3: for l ∈L do 4: for ot ∈(OT ∈l) do 5: Create empty object type table 6: for o ∈ot do ▷Find all objects of an object type 7: Create row with objectID and trace attributes ▷Trace attributes = static object attributes 8: for e ∈L do 9: Match event attributes to the event or to an object 10: Create newEventID with log identifier ▷To distinguish similar events of different logs 11: Create event table el with static event attributes. 12: Create dynamic attributes table with valueID, value(s) and two foreign keys {newEventID, objectID} 13: Create empty event table E with a column for every object type. 5 Conclusion This paper illustrates that the OCEL standard has certain limitations regarding attribute analysis, such as unambiguously linking attributes to both an event and an object or not being able to track attribute value changes. To deal with these challenges, an enhanced Data-aware OCEL (DOCEL) is proposed together with an algorithm to adapt XES logs into the DOCEL log format. With DOCEL, the authors hope that new contributions will also take into account this data-flow Enhancing Data-Awareness of Object-Centric Event Logs 29 perspective not only for object-centric process and decision mining algorithms but also for other domains such as IoT-oriented process analysis. References 1. van der Aalst, W., Berti, A.: Discovering object-centric Petri nets. Fundam. Inform. 175(1–4), 1–40 (2020) 2. Adams, J.N., van der Aalst, W.: Precision and fitness in object-centric process mining. In: 2021 3rd International Conference on Process Mining (ICPM), pp. 128–135. IEEE (2021) ( ) 3. Adams, J.N., Schuster, D., Schmitz, S., Schuh, G., van der Aalst, W.M.: Defining cases and variants for object-centric event data. arXiv preprint arXiv:2208.03235 (2022) 4. Artale, A., Kovtunova, A., Montali, M., van der Aalst, W.M.P.: Modeling and rea- soning over declarative data-aware processes with object-centric behavioral con- straints. In: Hildebrandt, T., van Dongen, B.F., R¨oglinger, M., Mendling, J. (eds.) BPM 2019. LNCS, vol. 11675, pp. 139–156. Springer, Cham (2019). https://doi. org/10.1007/978-3-030-26619-6 11 5. Berti, A.: Filtering and sampling object-centric event logs. arXiv preprint arXiv:2205.01428 (2022) 6. Bertrand, Y., De Weerdt, J., Serral, E.: A bridging model for process mining and IoT. In: Munoz-Gama, J., Lu, X. (eds.) ICPM 2021. LNBIP, vol. 433, pp. 98–110. Springer, Cham (2022). https://doi.org/10.1007/978-3-030-98581-3 8 7. De Leoni, M., van der Aalst, W.M.P., Dees, M.: A general process mining frame- work for correlating, predicting and clustering dynamic behavior based on event logs. Inf. Syst. 56, 235–257 (2016) 8. De Smedt, J., Hasi´c, F., van den Broucke, S.K., Vanthienen, J.: Holistic discovery of decision models from process execution data. Knowl.-Based Syst. 183, 104866 (2019) ( ) 9. Di Francescomarino, C., Dumas, M., Maggi, F.M., Teinemaa, I.: Clustering-based predictive process monitoring. IEEE Trans. Serv. Comput. 12(6), 896–909 (2016) 10. Galanti, R., Coma-Puig, B., de Leoni, M., Carmona, J., Navarin, N.: Explainable 9. Di Francescomarino, C., Dumas, M., Maggi, F.M., Teinemaa, I.: Clustering-based predictive process monitoring. IEEE Trans. Serv. Comput. 12(6), 896–909 (2016) 10. Galanti, R., Coma-Puig, B., de Leoni, M., Carmona, J., Navarin, N.: Explainable predictive process monitoring. In: 2020 2nd International Conference on Process Mining (ICPM), pp. 1–8. IEEE (2020) ( ) ( ) 11. Galanti, R., de Leoni, M., Navarin, N., Marazzi, A.: Object-centric process predic- tive analytics. arXiv preprint arXiv:2203.02801 (2022) 12. Ghahfarokhi, A.F., van der Aalst, W.: A python tool for object-centric process mining comparison. arXiv preprint arXiv:2202.05709 (2022) ( ) 13. Ghahfarokhi, A.F., Akoochekian, F., Zandkarimi, F., van der Aalst, W.M.: Clus- tering object-centric event logs. arXiv preprint arXiv:2207.12764 (2022) ( ) 14. Ghahfarokhi, A.F., Park, G., Berti, A., van der Aalst, W.: OCEL standard. Process 14. References Ghahfarokhi, A.F., Park, G., Berti, A., van der Aalst, W.: OCEL standard. Process and Data Science Group, RWTH Aachen University, Technical report 1 (2020) p, y, p ( ) 15. G¨unther, C.W., Verbeek, H.M.W.: XES standard definition. IEEE Std (2014) 16. Hasi´c, F., Devadder, L., Dochez, M., Hanot, J., De Smedt, J., Vanthienen, J.: Challenges in refactoring processes to include decision modelling. In: Teniente, E., Weidlich, M. (eds.) BPM 2017. LNBIP, vol. 308, pp. 529–541. Springer, Cham (2018). https://doi.org/10.1007/978-3-319-74030-0 42 17. de Leoni, M., van der Aalst, W.M.P.: Data-aware process mining: discovering deci- sions in processes using alignments. In: Proceedings of the 28th Annual ACM Symposium on Applied Computing, pp. 1454–1461. ACM (2013) A. Goossens et al. 30 18. Li, G., de Murillas, E.G.L., de Carvalho, R.M., van der Aalst, W.M.P.: Extracting object-centric event logs to support process mining on databases. In: Mendling, J., Mouratidis, H. (eds.) CAiSE 2018. LNBIP, vol. 317, pp. 182–199. Springer, Cham (2018). https://doi.org/10.1007/978-3-319-92901-9 16 19. Mannhardt, F., de Leoni, M., Reijers, H.A., van der Aalst, W.M.P.: Decision min- ing revisited - discovering overlapping rules. In: Nurcan, S., Soffer, P., Bajec, M., Eder, J. (eds.) CAiSE 2016. LNCS, vol. 9694, pp. 377–392. Springer, Cham (2016). https://doi.org/10.1007/978-3-319-39696-5 23 20. OMG: Uml: Unified Modeling Language 2.5.1 (2017). https://www.omg.org/spec/ UML/2.5.1/About-UML/. Accessed 23 June 2022 21. Rebmann, A., Rehse, J.R., van der Aa, H.: Uncovering object-centric data in clas- sical event logs for the automated transformation from XES to OCEL. In: Business Process Management-20th International Conference, BPM, pp. 11–16 (2022) ( ) 22. Vanthienen, J.: Decisions, advice and explanation: an overview and research agenda. In: A Research Agenda for Knowledge Management and Analytics, pp. 149–169. Edward Elgar Publishing (2021) 23. Xiong, J., Xiao, G., Kalayci, T.E., Montali, M., Gu, Z., Calvanese, D.: Extraction of object-centric event logs through virtual knowledge graphs (2022). http://www. inf.unibz.it/∼calvanese/papers/xiong-etal-DL-2022.pdf Open Access This chapter is licensed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license and indicate if changes were made. The images or other third party material in this chapter are included in the chapter’s Creative Commons license, unless indicated otherwise in a credit line to the material. References If material is not included in the chapter’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder.
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Rural-urban differences in workplace health promotion among employees of small and medium-sized enterprises in Germany
BMC health services research
2,022
cc-by
8,222
© The Author(s) 2022. Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://​creat​iveco​mmons.​org/​licen​ses/​by/4.​0/. The Creative Commons Public Domain Dedication waiver (http://​creat​iveco​ mmons.​org/​publi​cdoma​in/​zero/1.​0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data. Lindert et al. BMC Health Services Research (2022) 22:681 https://doi.org/10.1186/s12913-022-08052-9 Lindert et al. BMC Health Services Research (2022) 22:681 https://doi.org/10.1186/s12913-022-08052-9 Open Access Abstract Background:  Rural and urban areas hold different health challenges and resources for resident small and medium- sized enterprises (SMEs) and their employees. Additionally, residents of urban and rural areas differ in individual char‑ acteristics. This study aims at investigating potential rural-urban differences (1) in the participation rate in workplace health promotion (WHP) and (2) in the relationship of WHP and health relevant outcomes in residents living in rural or urban German areas and working in SMEs. Methods:  Data of a large German Employee Survey in 2018 were used and analyzed by chi-square and t-tests and regression analyses regarding job satisfaction, sick days, and psychosomatic complaints. A total of 10,763 SME employees was included in analyses (23.9% living in rural, 76.1% living in urban areas). Results:  Analyses revealed higher participation rates for SME employees living in rural areas. SME employees living in urban areas reported more often the existence of WHP. Results showed (a) significance of existence of WHP for psychosomatic complaints and (b) significance of participation in WHP for job satisfaction in SME employees living in urban but not for those living in rural areas. Conclusion:  The revealed disparities of (1) higher participation rates in SME employees living in rural areas and in (2) the relationship of WHP aspects with health relevant outcomes are of special interest for practitioners (, e.g. human resource managers), politicians, and researchers by providing new indications for planning and evaluating WHP measures. Keywords:  Occupational health, Psychosomatic complaints, Job satisfaction, Sick leave days, Employee health to identify relevant WHP topics in enterprises. Unfor- tunately, most smaller enterprises have limited access to such data (, e.g. from health insurances, human resource departments or occupational physicians) [1]. Rural‑urban differences in workplace health promotion among employees of small and medium‑sized enterprises in Germany Lara Lindert1*   , Lukas Kühn1 and Kyung‑Eun Choi1,2 Introduction Workplace health promotion (WHP) is a proven means in the health maintenance of employees. However, depending on the offer and personal characteristics, the participation rates vary enormously. To increase par- ticipation rates, WHP should be targeted to the needs of employees. Health and sickness absence data can help Demographic characteristics of target groups, work- place and work settings and extraneous context might be associated with WHP feasibility and sustainability [2]. Participation in WHP is influenced by social and envi- ronmental support, believe in effectiveness, time- and health-related barriers (, e.g. time of event during work or leisure time), fatiguing work and jobs with high physi- cal or emotional demands with low job control [3–5]. *Correspondence: lara.lindert@mhb-fontane.de 1 Center for Health Services Research, Brandenburg Medical School Theodor Fontane, Fehrbelliner Str. 38, 16816 Neuruppin, Germany Full list of author information is available at the end of the article 1 Center for Health Services Research, Brandenburg Medical School Theodor Fontane, Fehrbelliner Str. 38, 16816 Neuruppin, Germany Full list of author information is available at the end of the article © The Author(s) 2022. Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://​creat​iveco​mmons.​org/​licen​ses/​by/4.​0/. The Creative Commons Public Domain Dedication waiver (http://​creat​iveco​ mmons.​org/​publi​cdoma​in/​zero/1.​0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data. Page 2 of 10 Lindert et al. BMC Health Services Research (2022) 22:681 Research on rural and urban aspects on WHP in small and medium-sized enterprises (SME) so far focuses on location of enterprises. In this study, we use a new approach and examine urban-rural differences in WHP based on employees residence for two reasons: colleagues. Social pressure might also “force” employ- ees to participate in WHP measures. Moreover, WHP measures in large companies are probably more often offered only for selected departments and not open to all employees [12, 17]. Especially SMEs are affected by demographic change, as they often do not have resources to develop demographic management strategies and are rather located in rural areas [18].f 1. Rural and urban areas hold different challenges for both enterprises and residents. Rural and urban areas hold different health chal- lenges and resources for their residents: Urban areas can threaten residents’ health due to urban narrow- ness, lack of green spaces, high traffic volume with high noise levels, high air pollution, anonymity, and stress. On the other hand, they usually have a good local supply, a high density of public transport, good access to educa- tion, a rather health-promoting mobility, and a high density of health care facilities [19]. Companies in rural areas in particular are confronted with an aging work- force, as younger generations are increasingly drawn to urban areas [20, 21]. For rural areas, a systematic review revealed provider shortage, maldistribution, quality defi- ciencies, access limitations, and inefficient utilization as main aspects of health care shortage in developed countries. Accordingly, inefficient utilization is related to socio-cultural reasons: e.g. characteristics of rural residents like self-resilience, stoicism and proud [9, 22], and stigmatization of mental disorders [10] may hinder individuals in utilization of health care services in rural regions [23]. Furthermore, Young et  al. [24] found that workers with bone fractures in rural areas are less likely to use care services and have shorter absences at work than workers in urban areas, which might be due to the accessibility of care services, but also due to psychosocial factors such as coping strategies and health attitudes: in this regard, the authors cited studies demonstrating that residents of rural areas have more active coping strate- gies, higher self-efficacy expectations, and accept adver- sity as part of rural life [25, 26]. 2. All enterprises have access to information on employees’ place of residence. Study results may especially help practitioners (, e.g. human resource managers,) in SME to identify pre- liminary indications for suitable WHP measures. WHP should be tailored to employees’ needs. An essential criterion for the suitability of WHP can be the place of employees’ residence. For example, employees liv- ing in the city with good access to training centers might rather make use of financial support for training courses, whereas employees living in rural areas, with no good access to training centers, might rather benefit from training possibilities at company sites. As WHP is of interest for SME worldwide [6–8] and as characteris- tics of urban and rural areas differ not only in Germany but worldwide [3, 9, 10], this study is of global interest. It approaches WHP aspects from a new perspective and provides orientation not only for practitioners, (e.g. human resource managers), but also for researchers in the field of work and health. Background Demographic change and the shortage of skilled workers pose challenges for employers. It is becoming increas- ingly important for companies to keep employees healthy and on the job for as long as possible. Early detection of first symptoms as well as general prevention measures are enormously important to prevent chronic diseases. While the success of specific WHP measures is always context dependent, it is certain that WHP in general has positive effects. Studies revealed increased job satisfac- tion in connection with (offers of) WHP [6, 7, 11, 12] and positive effects of WHP measures on psychosomatic complaints [13]. Several studies revealed positive effects of WHP on sick leave and sickness costs [8, 11, 14, 15]. Hypotheses d h Regarding the current state of research, our final research questions are: (1) Are there differences in the use of WHP measures between employees of SME (SME-E) living in urban (SME-Eu) and those living in rural (SME-Er) areas? (2) Are there differences in the relationship of existence of WHP with job satisfaction, psychosomatic complaints and sick days between SME-Eu and SME-Er? (3) Are there dif- ferences in the relationship of participation in WHP with job satisfaction, psychosomatic complaints and sick days between SME-Eu and SME-Er?fi However, despite numerous studies on the positive effects of WHP, there is still a need to catch up: in par- ticular, SMEs lag behind in the implementation of WHP [12, 16, 17]. To date, WHP has been predominantly found in large companies, although an upward trend can be seen in both areas. Interestingly, WHP offers are mainly used by employees in smaller companies: The direct employee approach is possibly easier in SMEs, and the small company size might facilitate motivation through Considering inefficient utilization of health care, char- acteristics of rural residents, and stigmatization aspects, it is assumed that. Lindert et al. BMC Health Services Research (2022) 22:681 Page 3 of 10 (h1) The use of WHP measures is more likely in SME-Eu. According to regional differences in health-related environmental aspects and in residents’ characteristics, we hypothesize that.h in large companies (> 250 employees, incl. trainees) were excluded from this study (see Fig. 1). Measures (h2) The relationship between existence of WHP with job satisfaction, psychosomatic complaints and sick days differs between SME-Eu and SME-Er. To distinguish SME-E in rural and urban areas, we cre- ated a dichotomous variable according to information on BIK 10. BIK 10 consists of 10 items and is labeled as fol- lows: 1 = less than 2000 residents, 2 = 2000 to less than 5000 residents, 3 = 5000 to less than 20.000 residents, 4 = 20.000 to less than 50.000 residents, 5 = 50.000 to less than 100.000 residents (peripheral areas), 6 = 50.000 to less than 10.000 residents (core areas), 7 = 100.000 to less than 500.000 residents (peripheral areas), 8 = 100.000 to less than 500.000 residents (core areas), 9 = 500.000 and more residents (peripheral areas), 10 = 500.000 and more residents (core areas). Items 1 to 4 were considered as rural areas, items 5 to 10 as urban areas [28]. To meas- ure WHP, participants were asked if WHP measures were carried out in their company within the last two years, f (h3) The relationship between participation in WHP with job satisfaction, psychosomatic complaints and sick days differs between SME-Eu and SME-Er. f (h3) The relationship between participation in WHP with job satisfaction, psychosomatic complaints and sick days differs between SME-Eu and SME-Er. Methods We used data of a cross-sectional employee survey that was conducted on behalf of the Federal Institute for Vocational Education and Training (BIBB) and the Fed- eral Institute for Occupational Safety and Health (BAuA) from October 2017 to April 2018 via Computer Assisted Telephone Interviews (CATI) in Germany (BIBB/ BAuA Employment Survey of the Working Population on Qualification and Working Conditions in Germany 2018, doi:https://​doi.​org/​10.​7803/​501.​18.1.​1.​10). The data access was provided via a Scientific-Use-File [Remote Data Access; On-site Use in Bonn] of the Data Research Centre at the Federal Institute for Vocational Train- ing and Education (BIBB-FDZ). The survey was aligned for German speaking paid employees, who were at least 15 years old and worked at least 10 hours per week. It covered topics on work requirements and activities, working conditions, health burdens and complaints, and qualifications. To recruit participants, a sampling frame was initially established by the BIK Institute using a ran- dom digit dialing procedure. As some individuals are reachable only via mobile phone, the recruitment pro- cess followed a dual-frame approach to capture mobile- only data to a sufficient extent. The gross samples were allocated separately, drawn separately, but processed together in the fieldwork. The dual-frame approach leads to bias-free samples without lump effects, that meet the requirements for random samples based on probability theory (probability sampling). Interviewers were trained beforehand. A total of 20,012 interviews have been con- ducted during survey period [27]. Fig. 1  Flow chart of study sampling Study population I hi d In this study, we focused on data of participants with complete information on the following variables: SME, existence of WHP, job satisfaction, sick days, psychoso- matic complaints, age, gender, educational status, career desire, private care tasks, emotional work, work inten- sity, leadership tasks, work life balance, and work dura- tion. Companies with less than 250 employees (incl. trainees) where considered as SMEs. Data of employees Fig. Lindert et al. BMC Health Services Research (2022) 22:681 Page 4 of 10 2. provides information on participants residences according to BIK10, 2. provides information on participants residences according to BIK10, and, if so, if they participated in the measure(s). Job satis- faction was measured using one item “And now all things considered: How satisfied are you with your work overall?” with answers from 1 “not satisfied” to 4 “very satisfied”. Sick days were recorded for the last 12 months (self- reported by participants). Psychosomatic complaints were measured asking for frequently occurring general fatigue, dullness or exhaustion, headaches, stomach or digestive problems, nervousness or irritability, nocturnal sleep disorders, despondency, physical exhaustion and emotional exhaustion within the last twelve months dur- ing work or on working days. Possible answers were yes/ no. The possible range reached from 0 (no complaints) to 8 (complaints in all areas). For more details see also [29]. 3. provides information on existence of and participa- tion in WHP, and delivers information on possibly confounding variables as 4. work relevant aspects as well as 5. individual aspects (, e.g. demographic data, private care tasks). Results A total of 10,763 employees in SMEs with 2574 (23.9%) employees living in rural and 8189 (76.1%) living in urban areas remained. Mean age in rural areas was 47.7 (SD  = 11.03) years, in urban areas 46.9 (SD  = 11.44) years. In rural areas there were 1190 (46.2%) male and 1384 female (53.8%), in urban areas 3747 (45.8%) male and 4442 (54.2%) female employees. As participation in WHP could only be answered when existence of WHP was given, a total of 4030 participants remained for mod- els including participation in WHP (see Table 1). 1. includes SME-E all over Germany, Statistical analyses As the main aim of this study is to examine differences in SME-Er and SME-Eu, data analyses followed a descriptive comparative approach. To answer (h1) we conducted a chi-square test for par- ticipation in WHP of SME-Er and SME-Eu. To answer (h2) and (h3) we conducted block-wise multiple linear regression analyses for psychosomatic complaints and job satisfaction (dependent continu- ous variables) for SME-Er and SME-Eu each. For sick days (count variable) we conducted poisson regressions for SME-Er and SME-Eu each. As independent variables we focused on existence of WHP (binary variable) and participation in WHP (binary variable). We considered p < .05 as level of significance for p-values in our analyses. Job satisfaction is higher in SME-Er (p < 0.05). In this sample there are no significant differences in gender, pri- vate care tasks, leadership function, psychosomatic com- plaints, sick days, work intensity, emotional work, work life balance, and work duration of SME-Er and SME-Eu. SME-Er are higher in age (p < 0.01) and have lower career desire (p < 0.05) and education status (p < 0.001). SME-Eu reported more often to get WHP offers (p < 0.05). 35.7% of rural and 38.1% of urban residents reported existence of WHP within the last two years, of which 70.6% of rural and 65.1% of urban residents reported participation in WHP (see Table 1).h i It is already well examined that working conditions and work organization can affect the health of employ- ees [30–39]. Therefore, we integrated working conditions and factors of work organization (work intensity, emo- tional work, leadership tasks, work life balance, and work duration) as confounding variables in our regression models additionally to age, gender, education status, indi- viduals’ career desire, and private care tasks. The results of block-wise analyses for psychosomatic complaints and job satisfaction can be found in supplementary files A and B. To test for multicollinearity, we examined correla- tions between variables. No value was found to be > .7 (see supplementary file C). According to the central limit theorem, the sampling distribution will be approximately normally distributed in large study samples [40–42]. (h1): The use of WHP measures is more likely in SME-Eu. A chi-square test revealed that participation in WHP is more common in SME-Er (p < 0.01) (see Table 1).h (h1): The use of WHP measures is more likely in SME-Eu. Statistical analyses A chi-square test revealed that participation in WHP is more common in SME-Er (p < 0.01) (see Table 1).h (h2): The relationship between existence of WHP and job satisfaction, psychosomatic complaints, and sick days differs between SME-Eu and SME-Er. In multiple linear regression analyses for job satisfaction and psycho- somatic complaints the existence of WHP in SMEs was significant for job satisfaction in SME-Er (beta = 0.142, p  < 0.001) and SME-Eu (beta = 0.132, p  < 0.001) and for psychosomatic complaints in SME-Eu (beta = − 0.238, p < 0.001). No significance for existing WHP offers was found regarding psychosomatic complaints in SME- Er (see Table  2). Existence of WHP for sick days was revealed in SME-Eu (95% CI, .887 to .912) but not in SME-Er (95% CI, .987 to 1.036) (see Table 3).h Furthermore, we conducted chi-square and t-tests to reveal potential differences in existence of WHP, job sat- isfaction, psychosomatic complaints, sick days, and con- founding variables between SME-Eu and SME-Er. (h3): The relationship between participation in WHP and job satisfaction, psychosomatic complaints, and sick days differs between SME-Eu and SME-Er. Results of multiple linear regression analyses in only SME-E who (h3): The relationship between participation in WHP and job satisfaction, psychosomatic complaints, and sick days differs between SME-Eu and SME-Er. Results of multiple linear regression analyses in only SME-E who For this study, we decided to use the BIBB/BAuA Employment Survey 2018, since it Lindert et al. SME-Er employees of small and medium sized enterprises living in rural areas, SME-Eu employees of small and medium sized enterprises living in urban areas, WHP workplace health promotion, SE standard error; p-values < 0.05 are shown in bold Statistical analyses BMC Health Services Research (2022) 22:681 Page 5 of 10 Table 1  Chi-square and t-tests regarding rural and urban residents N number of individuals in study population, SME-Er employees of small and medium sized enterprises living in rural areas, SME-Eu employees of small and medium sized enterprises living in urban areas, WHP workplace health promotion, M mean, SD standard deviation; p-values < 0.05 are shown in bold N SME-Er (percentage) N SME-Eu (percentage) chi-square test p-value existence of WHP yes / no 919 (35.7) / 1655 (64.3) 3122 (38.1) / 5067 (61.9) 0.027 participation in WHP yes / no 648 (70.6) / 270 (29.4) 2025 (65.1) / 1087 (34.9) 0.002 gender male / female 1190 (46.2) / 1384 (53.8) 3747 (45.8) / 4442 (54.2) 0.673 care yes / no 231 (9.0) / 2343 (91.0) 637 (7.8) / 7552 (92.2) 0.052 leadership yes / no 924 (35.9) / 1650 (64.1) 2811 (34.3) / 5378 (65.7) 0.144 N M SD Median (min / max) 95% confidence intervall t-test p-value lower value upper value job satisfaction rural 2574 3.26 0.62 3.00 (1.00 / 4.00) 0.00194 0.05803 0.036 urban 8189 3.23 0.64 3.00 (1.00 / 4.00) sick days rural 2574 11.58 28.31 3.00 (0.00 / 365.00) −0.12875 2.34173 0.079 urban 8189 10.48 26.49 3.00 (0.00 / 365.00) psychosomatic com‑ plaints rural 2574 2.40 2.37 2.00 (0.00 / 8.00) −0.06421 0.14495 0.449 urban 8189 2.36 2.36 2.00 (0.00 / 8.00) age rural 2574 47.66 11.03 50.00 (16.00 / 78.00) 0.28529 1.27141 0.002 urban 8189 46.88 11.44 49.00 (15.00 / 81.00) career desire rural 2574 2.41 1.22 2.00 (1.00 / 5.00) −0.11480 −0.00555 0.031 urban 8189 2.47 1.26 2.00 (1.00 / 5.00) education rural 2574 2.59 0.94 2.00 (1.00 / 4.00) −0.25361 −0.16859 0.000 urban 8189 2.80 1.03 2.00 (1.00 / 4.00) work intensity rural 2574 3.09 0.62 3.20 (1.00 / 4.00) −0.03335 0.02042 0.637 urban 8189 3.09 0.60 3.20 (1.00 / 4.00) emotional work rural 2574 2.40 0.99 3.00 (1.00 / 4.00) −0.03433 0.05350 0.669 urban 8189 2.39 0.99 2.00 (1.00 / 4.00) work life balance rural 2574 3.49 0.73 4.00 (2.00 / 4.00) −0.06220 0.00092 0.060 urban 8189 3.52 0.71 4.00 (2.00 / 4.00) work duration rural 2574 37.77 12.24 40.00 (10.00 / 120.00) −0.43800 0.63800 0.715 urban 8189 37.67 11.80 40.00 (10.00 / 120.00) Table 1  Chi-square and t-tests regarding rural and urban residents N number of individuals in study population, SME-Er employees of small and medium sized enterprises living in rural areas, SME-Eu employees of small and medium sized enterprises living in urban areas, WHP workplace health promotion, M mean, SD standard deviation; p-values < 0.05 are shown in bold Table 2  Multiple linear regression analyses, existence of WHP (N SME-Er = 2574; N SME-Eu = 8189) Table 2  Multiple linear regression analyses, existence of WHP (N SME-Er = 2574; N SME-Eu = 8189) SME-Er employees of small and medium sized enterprises living in rural areas, SME-Eu employees of small and medium sized enterprises living in urban areas, WHP workplace health promotion, SE standard error; p-values < 0.05 are shown in bold determinant factors job satisfaction psychosomatic complaints beta (SE) R2 (adjusted ­R2) beta (SE) R2 (adjusted ­R2) SME-Er SME-Eu SME-Er SME-Eu SME-Er SME-Eu SME-Er SME-Eu existence of WHP 0.142 (0.024) 0.132 (0.014) 0.109 (0.105) 0.113 (0.111) − 0.122 (0.084) − 0.238 (0.046) 0.269 (0.266) 0.264 (0.263) emotional work −0.092 (0.013) − 0.087 (0.007) 0.842 (0.045) 0.755 (0.025) work intensity −0.098 (0.021) − 0.128 (0.013) 0.855 (0.074) 0.828 (0.042) leadership tasks 0.178 (0.026) 0.169 (0.015) −0.321 (0.091) −0.396 (0.05) work life balance 0.147 (0.017) 0.156 (0.01) −0.393 (0.059) −0.487 (0.033) work duration 0.004 (0.001) 0.003 (0.001) −0.001 (0.004) 0.005 (0.002) age 0.000 (0.001) 0.003 (0.001) −0.013 (0.004) −0.017 (0.002) gender 0.107 (0.027) 0.081 (0.015) 0.128 (0.092) 0.304 (0.05) education 0.043 (0.013) 0.027 (0.007) −0.182 (0.044) −0.167 (0.022) career desire −0.015 (0.01) 0.024 (0.006) −0.041 (0.036) −0.067 (0.02) care −0.024 (0.041) 0.001 (0.025) 0.2 (0.141) 0.321 (0.084) Lindert et al. Statistical analyses BMC Health Services Research (2022) 22:681 Page 6 of 10 Table 3  Poisson regression, existence of WHP (N SME-Er = 2574; N SME-Eu = 8189) Table 3  Poisson regression, existence of WHP (N SME-Er = 2574; N SME-Eu = 8189) Dependent variable: sick days SME-Er employees of small and medium sized enterprises living in rural areas, SME-Eu employees of small and medium sized enterprises living in urban areas, WHP workplace health promotion, Exp(B) exponentiated B; p-values < 0.05 are shown in bold determinant factors SME-Er SME-Eu Exp(B) 95% Wald Confidence Interval Exp(B) 95% Wald Confidence Interval lower upper lower upper existence of WHP (no) 1.012 0.987 1.036 0.900 0.887 0.912 existence of WHP (yes) 1 1 emotional work 1.123 1.109 1.137 1.238 1.229 1.248 work intensity 1.361 1.331 1.391 1.115 1.101 1.129 leadership tasks (no) 1.584 1.541 1.627 1.284 1.265 1.304 leadership tasks (yes) 1 1 work life balance 0.917 0.903 0.932 0.899 0.890 0.907 work duration 1.003 1.002 1.004 1.005 1.004 1.005 age 1.010 1.009 1.011 1.013 1.012 1.014 male 1.273 1.240 1.307 0.947 0.933 0.961 female 1 1 education 0.828 0.817 0.839 0.758 0.753 0.763 career desire 0.928 0.918 0.937 0.948 0.942 0.954 care (no) 0.720 0.696 0.746 0.926 0.905 0.948 Care (yes) 1 1 Dependent variable: sick days p y SME-Er employees of small and medium sized enterprises living in rural areas, SME-Eu employees of small and medium sized enterprises living in urban areas, WHP workplace health promotion, Exp(B) exponentiated B; p-values < 0.05 are shown in bold SME-Er employees of small and medium sized enterprises living in rural areas, SME-Eu employees of small and medium sized enterprises living in urban areas, WHP workplace health promotion, Exp(B) exponentiated B; p-values < 0.05 are shown in bold Table 4  Multiple linear regression analyses, participation in WHP (N SME-Er = 918; N SME-Eu = 3112) SME-Er employees of small and medium sized enterprises living in rural areas, SME-Eu employees of small and medium sized enterprises living in urban areas, WHP workplace health promotion, SE standard error; p-values < 0.05 are shown in bold determinant factors job satisfaction psychosomatic complaints beta (SE) R2 (adjusted ­R2) beta (SE) R2 (adjusted ­R2) SME-Er SME-Eu SME-Er SME-Eu SME-Er SME-Eu SME-Er SME-Eu participation in WHP 0.066 (0.04) 0.07 (0.022) 0.091 (0.080) 0.087 (0.083) −0.086 (0.148) 0.078 (0.075) 0.272 (0.264) 0.238 (0.235) emotional work −0.077 (0.021) − 0.088 (0.012) 0.833 (0.076) 0.729 (0.041) work intensity −0.08 (0.034) − 0.1 (0.02) 1.001 (0.127) 0.777 (0.069) leadership tasks 0.158 (0.04) 0.165 (0.023) −0.231 (0.149) −0.389 (0.079) work life bal‑ ance 0.142 (0.028) 0.125 (0.016) −0.476 (0.103) −0.455 (0.056) work duration 0.004 (0.002) 0.003 (0.001) −0.01 (0.007) 0.008 (0.004) age −0.002 (0.002) 0.003 (0.001) − 0.007 (0.007) −0.012 (0.004) gender 0.032 (0.042) 0.067 (0.023) 0.044 (0.153) 0.228 (0.079) education 0.027 (0.02) 0.014 (0.01) −0.198 (0.074) −0.162 (0.036) career desire −0.015 (0.016) 0.027 (0.009) −0.043 (0.06) −0.056 (0.032) care −0.088 (0.061) 0.025 (0.039) 0.05 (0.225) 0.44 (0.134) Table 4  Multiple linear regression analyses, participation in WHP (N SME-Er = 918; N SME-Eu = 3112) medium sized enterprises living in rural areas, SME-Eu employees of small and medium sized enterprises living in urban areas, WHP E standard error; p-values < 0.05 are shown in bold SME-Er employees of small and medium sized enterprises living in rural areas, SME-Eu employees of small and medium sized enterprises l workplace health promotion, SE standard error; p-values < 0.05 are shown in bold WHP was found for sick days in SME-Er (95% CI, 1.110 to 1.206) and SME-Eu (95% CI, 1.063 to 1.112) (see Table 5).i WHP was found for sick days in SME-Er (95% CI, 1.110 to 1.206) and SME-Eu (95% CI, 1.063 to 1.112) (see Table 5).i reported existing WHP offers, showed significant results for participation in WHP on job satisfaction in SME-Eu (beta =0.07, p < 0.001) and not for psychosomatic com- plaints (see Table  4). p y SME-Er employees of small and medium sized enterprises living in rural areas, SME-Eu employees of small and medium sized enterprises living in urban areas, WHP workplace health promotion, Exp(B) exponentiated B; p-values < 0.05 are shown in bold Statistical analyses Significance of participation in reported existing WHP offers, showed significant results for participation in WHP on job satisfaction in SME-Eu (beta =0.07, p < 0.001) and not for psychosomatic com- plaints (see Table  4). Significance of participation in u Confounding variables were found to be significant in most cases, however beta and significance level differed Lindert et al. BMC Health Services Research (2022) 22:681 Page 7 of 10 participation in WHP with special focus on rural and urban aspects of employees’ residence. (1) between models for job satisfaction and psychoso- matic complaints and (2) between models for SME-Er and SME-Eu. The multiple linear regression model with all independent variables works best for psychosomatic complaints (R2 between 0.238 and 0.272) (see Tables  2 and 4). Models for sick days (see Tables 3 and 5) were all significant with p < .001. y With regard to significance of existence of WHP for psychosomatic complaints in SME-Eu but not in SME- Er, a possible explanation might be social network dif- ferences: SME-Er might have a better social network, which is an important resource when it comes to psycho- logical health [43]. However, no significant differences in psychosomatic complaints were found in study sample (see Table 1). Also, it might be the case that WHP offers reaching SME-Eu differ from offers reaching SME-Er as they focus more on psychological aspects. It might also be, that SME-Er do not use those offers due to stigmatiza- tion of mental disorders in rural regions [10]. However, no significance was found for participation in WHP nei- ther in SME-Er nor in SME-Eu for psychosomatic com- plaints. Sick days were found to be significantly lower in SME-Eu perceiving no existence of WHP, but not in SME- Er. This is against the results of studies revealing positive impact of WHP on sick days [8, 11, 14, 15]. However, this result is based on existence of, not on participation to, WHP. Employees with lower sick days might not be aware of WHP offers, as they perceive no need to actu- ally work on their health. As Young et al. [24] found that workers with bone fractures in rural areas have shorter absences at work than workers in urban areas, this might Discussion Previous research identified positive effects of WHP on job satisfaction, psychosomatic complaints, and sick days [6–8, 11–15]. In this study, we found existence of and participation in WHP to be significant in some cases for psychosomatic complaints, job satisfaction, and sick days. This section will discuss how this, and differences in participation rates, might be explained by rural-urban differences in SME-Er and SME-Eu. f Despite our assumptions, SME-Er might use WHP offers rather than SME-Eu to compensate for missing health promotion offers in rural areas. Furthermore, as even existing health services in rural areas are often not used [23], in our study, this seems to be different in rela- tion to WHP. While health services are not used due to characteristics of rural residents and stigmatization of illness [9, 10, 22, 24], WHP might be associated with less stigmatization. However, future research needs to examine individual and environmental factors that affect Table 5  poisson regression, participation in WHP (N SME-Er = 918; N SME-Eu = 3112) Dependent variable: sick days SME-Er employees of small and medium sized enterprises living in rural areas, SME-Eu employees of small and medium sized enterprises living in urban areas, WHP workplace health promotion, Exp(B) exponentiated B; p-values < 0.05 are shown in bold determinant factors SME-Er SME-Eu Exp(B) 95% Wald Confidence Interval Exp(B) 95% Wald Confidence Interval lower upper lower upper participation in WHP (no) 1.157 1.110 1.206 1.087 1.063 1.112 participation in WHP (yes) 1 1 emotional work 1.088 1.064 1.112 1.196 1.181 1.210 work intensity 1.231 1.185 1.279 1.054 1.033 1.077 leadership tasks (no) 1.501 1.436 1.570 1.313 1.281 1.346 leadership tasks (yes) 1 1 work life balance 0.989 0.960 1.018 0.892 0.878 0.906 work duration 0.995 0.993 0.997 0.999 0.998 1.000 age 1.024 1.022 1.026 1.017 1.016 1.018 male 1.351 1.291 1.414 0.846 0.826 0.866 female 1 1 education 0.903 0.883 0.922 0.755 0.746 0.763 career desire 1.049 1.031 1.067 1.003 0.993 1.013 care (no) 0.881 0.829 0.937 0.906 0.874 0.939 care (yes) 1 1 Table 5  poisson regression, participation in WHP (N SME-Er = 918; N SME-Eu = 3112) Lindert et al. BMC Health Services Research (2022) 22:681 Page 8 of 10 also explain different results in SME-Er and SME-Eu in this case. also explain different results in SME-Er and SME-Eu in this case. measures in the interviews, since employees were not aware of having taken part in WHP offers [17]. Discussion Also dif- ferences in age, educational status, job satisfaction, and career desire have to be considered when focusing on dif- ferent results in SME-Eu and SME-Er. Significant results for participation in WHP for job satisfaction in SME-Eu but not SME-Er (b) might be explained by higher job satisfaction in SME-Er compared to SME-Eu (see Table  1). As Fritz [13] reported signifi- cance of WHP for psychosomatic complaints, this is not confirmed by study results in case of WHP participation in both groups. However, this might be explained, as we have no information on quality, intention, and quantity of WHP offers, and as results of which Fritz [13] reported are based on a targeted intervention with 12 measures implemented.f u r Despite the mentioned limitations, due to the quality of sampling process, study results can be transferred to German speaking SME-Er and SME-Eu in Germany. In global context, study results give first hints for practi- tioners, e.g. human resource managers. When planning WHP measures, it might be useful not to focus on com- pany location only, but also on employees’ residence. For example, SME-Er might use training possibilities at company sites rather than SME-Eu as access to train- ing centers in rural areas are limited. In this case, the decision whether to offer training opportunities for employees should depend on where most employees live and not on where the company is located. How- ever, future research needs to clarify which aspects of urban or rural life exactly have an impact on employees’ participation rates and focus on content, quality, and quantity of WHP measures. Thereby, both – individual and environmental – factors should be considered. Positive effects of WHP on sick leave and sickness costs have been revealed in past research [8, 11, 14, 15] and were confirmed by study results on participation in WHP for SME-Eu and SME-Er. SMEs that offer WHP measures might rather have an overarching occupational health management and focus on employees’ health not only with WHP offers, but also when it comes to working conditions and requirements, which might explain differences in results for existence of WHP and participation in WHP regarding psychoso- matic complaints and job satisfaction. As interviews were conducted prior to the outbreak of SARS-CoV-2, further research on WHP in rural and urban settings should also take into account the special challenges for employees during and after the pandemic. BAUA​: Federal Institute for Occupational Safety and Health; BIBB: Federal Insti‑ tute for Vocational Education and Training; BIBB-FDZ: Data Research Centre at the Federal Institute for Vocational Training and Education; CATI: Computer Assisted Telephone Interviews; SMEs: Small and medium-sized enterprises; SME-E: Employees of small and medium-sized enterprises; SME-Er: Employees of small and medium-sized enterprises living in rural areas; SME-Eu: Employees of small and medium-sized enterprises living in urban areas; WHP: Workplace health promotion. Conclusion h Research on rural and urban aspects on WHP in SME so far focuses on location of enterprises. In this study, we used a new approach and examined urban-rural differences in WHP, based on employees residence. Results indicate, that the place of residence influences the participation in WHP. When planning WHP meas- ures, it might be useful not to focus on the company location only, but also on employees’ residence. Future research could examine specific needs of both rural and urban residents and how the currently prevailing sup- ply meets these needs. Practitioners, politicians, as well as researchers are called upon to use these insights for the development of human resource management. Discussion In line with previous research [30–39] confounding variables were mostly significant in all models for job satisfaction, psychosomatic complaints and sick days. Block-wise analyzes slightly showed changes in beta for existence of WHP and participation in WHP regarding job satisfaction and psychosomatic complaints. However, in most cases, significant results still remained significant – so existence of WHP and participation in WHP are partly but not totally mediated by confounding variables. Strengths and limitations A major strengths of the study is the study population. By focusing on employees throughout Germany, the survey reached exactly the target group, that is relevant for research questions of this study. The methodological approach also ensured a good representativeness for Ger- man employees. However, to participate in the interviews, individuals had to be German speaking. This may have biased the results as non-German-speaking persons were not rep- resented in study sample. The data do also not provide information on intention, quality and quantity of WHP measures and participation. Another limitation emerges from the subjective perspective of employees – WHP measures might have been offered in companies under different designations (, e.g. as occupational health and safety measure,) or without any clear label at all. There- fore, employees might have not reported the WHP Additional file 1. Additional file 1. Availability of data and materialsi Data is free for scientific purpose and can be requested as scientific-use-file at the Federal Institute for Vocational Education and Training (https://​www.​bibb.​ de/​de/​1403.​php, doi:https://​doi.​org/​10.​7803/​501.​18.1.​1.​10). 13. Fritz S. Nützt betriebliche Gesundheitsförderung? - Neue Wege in der Evaluation. Wirtschaftspsychologie aktuell. 2005;1:19–22. Declarations 14. Kramer I, Sockoll I, Bödeker W. Die Evidenzbasis für betriebliche Gesund‑ heitsförderung und Prävention – Eine Synopse des wissenschaftlichen Kenntnisstandes. In: Badura B, Schröder H, Vetter C, editors. Fehlzeiten- Report 2008 Betriebliches Gesundheitsmanagement: Kosten und Nutzen Zahlen, Daten, Analysen aus allen Branchen der Wirtschaft. Heidelberg: Springer Medizin Verlag; 2009. Funding Funding was provided by own financial resources of junior research group. The junior research group is funded by the German pension insurance Berlin- Brandenburg (Deutsche Rentenversicherung Berlin-Brandenburg). Open Access funding enabled and organized by Projekt DEAL. 11. Parks KM, Steelman LA. Organizational wellness programs: a meta-analy‑ sis. J Occup Health Psychol. 2008;13(1):58–68. 12. Bödeker W, Hüsing T. iga.Report 12. IGA-Barometer 2. Welle. Einschätzun‑ gen der Erwerbsbevölkerung zum Stellenwert der Arbeit, zur Verbreitung und Akzeptanz von betrieblicher Prävention und zur krankheitsbed‑ ingten Beeinträchtigung der Arbeit – 2007. Essen/Dresden/Bonn/ Siegburg: BKK Bundesverband, Deutsche Gesetzliche Unfallversicherung DGUV, Institut Arbeit und Gesundheit BGAG, AOK-Bundesverband, Arbeiter-Ersatzkassen-Verband; 2008. Competing interests All authors declare no conflict of interests. 16. Menzel J, Drögemüller R, Hartwig C, Wollesen B. Innerbetriebliche Strukturen für Betriebliches Gesundheitsmanagement in kleinen und mittleren Unternehmen – Ein Ländervergleich aus Querschnittsdaten des EU-Projekts “Fit for Business” (Teil 2). Bewegungstherapie und Gesund‑ heitssport. 2016;32:85–90. Code availability SPSS Syntax can be requested and may be provided by corresponding author. 8. Kuoppala J, Lamminpaa A, Husman P. Work health promotion, job well- being, and sickness absences-a systematic review and meta-analysis. J Occup Environ Med. 2008;50(11):1216–27. 8. Kuoppala J, Lamminpaa A, Husman P. Work health promotion, job well- being, and sickness absences-a systematic review and meta-analysis. J Occup Environ Med. 2008;50(11):1216–27. Author details 1 1 Center for Health Services Research, Brandenburg Medical School Theodor Fontane, Fehrbelliner Str. 38, 16816 Neuruppin, Germany. 2 Danube Private University (DPU) GmbH, Steiner Landstraße 124, 3500 Krems‑Stein, Austria. 17. Beck D, Lenhardt U. Workplace health promotion in Germany: prevalence and utilisation. Analyses on labour force surveys of the Federal Institute for Occupational Safety and Health in 2006 and 2012. Gesundheitswesen. 2016;78(1):56–62. Received: 7 December 2021 Accepted: 5 May 2022 Received: 7 December 2021 Accepted: 5 May 2022 18. Nagel-Jachmann I. Demografische Entwicklung und Bedeutung für klein- und mittelständische Unternehmen. In: Schirmer U, editor. Demografie Exzellenz Handlungsmaßnahmen und Best Practices zum demografieori‑ entierten Personalmanagement. Wiesbaden: Springer Gabler; 2016. Acknowledgements 6. Eriksson A, Dellve L. Learning processes as key for success in workplace health promotion interventions in health care. Front Public Health. 2020;8:576693. 6. Eriksson A, Dellve L. Learning processes as key for success in workplace health promotion interventions in health care. Front Public Health. 2020;8:576693. g We would like to thank the Federal Institute for Vocational Education and Training (BIBB) and the Federal Institute for Occupational Safety and Health (BAuA) for providing the data of the BIBB/BAuA Employment Survey of the Working Population on Qualification and Working Conditions in Germany 2018 (doi:https://​doi.​org/​10.​7803/​501.​18.1.​1.​10) for this study. 7. Poursadeqiyan M, Hosseini Foladi S, Khammar A, Nabi Amjad R, Mario‑ ryad H, Hosseini Ghosheh SN, et al. A survey on the relationship between the status of occupational health management and job satisfaction among staff of rehabilitation centers in Tehran: a cross-sectional study. J Rehabil. 2019;20:242–55. Authors’ contributions The paper was written and visualized by L.L. Data was analyzed and inter‑ preted by L.L. under guided supervision of K.-E.C. and L.K. All authors have edited former versions and agreed to the published version of the manuscript. The author(s) read and approved the final manuscript. 9. Allan J, Ball P, Alston M. Developing sustainable models of rural health care: a community development approach. Rural Remote Health. 2007;7(7):818. 9. Allan J, Ball P, Alston M. Developing sustainable models of rural health care: a community development approach. Rural Remote Health. 2007;7(7):818. 10. Brems C, Johnson ME, Warner TD, Roberts LW. Barriers to healthcare as reported by rural and urban interprofessional providers. J Interprof Care. 2006;20(2):105–18. Abbreviations BAUA F d l I Page 9 of 10 Page 9 of 10 Lindert et al. BMC Health Services Research (2022) 22:681 4. Jorgensen MB, Villadsen E, Burr H, Punnett L, Holtermann A. Does employee participation in workplace health promotion depend on the working environment? A cross-sectional study of Danish workers. BMJ Open. 2016;6(6):e010516. Supplementary Information The online version contains supplementary material available at https://​doi.​ org/​10.​1186/​s12913-​022-​08052-9. 5. Kilpatrick M, Blizzard L, Sanderson K, Teale B, Jose K, Venn A. Barriers and facilitators to participation in workplace health promotion (WHP) activi‑ ties: results from a cross-sectional survey of public-sector employees in Tasmania, Australia. Health Promot J Austr. 2017;28(3):225–32. 5. Kilpatrick M, Blizzard L, Sanderson K, Teale B, Jose K, Venn A. Barriers and facilitators to participation in workplace health promotion (WHP) activi‑ ties: results from a cross-sectional survey of public-sector employees in Tasmania, Australia. Health Promot J Austr. 2017;28(3):225–32. Ethics approval and consent to participate As data was collected and provided anonymously by the Federal Institute for Vocational Education and Training and the Federal Institute for Occupational Safety and Health, no ethical approval for this study was requested by authors. 15. Sockoll I, Kramer I, Bödeker W. iga.Report 13. Wirksamkeit und Nutzen betrieblicher Gesundheitsförderung und Prävention. Zusammenstellung der wissenschaftlichen Evidenz 2000 bis 2006. Essen/Dresden/Bonn/ Siegburg: BKK Bundesverband, BGAG - Institut Arbeit und Gesundheit der Deutschen Gesetzlichen Unfallversicherung, AOK-Bundesverband, Verband der Ersatzkassen; 2008. References Statistik für Human- und Sozialwissenschaftler. 7th ed. Berlin, Heidelberg: Springer-Verlag; 2010. 41. Bortz J, Schuster C. Statistik für Human- und Sozialwissenschaftler. 7th ed. Berlin, Heidelberg: Springer-Verlag; 2010. • fast, convenient online submission • thorough peer review by experienced researchers in your field • rapid publication on acceptance • support for research data, including large and complex data types • gold Open Access which fosters wider collaboration and increased citations maximum visibility for your research: over 100M website views per year • At BMC, research is always in progress. Learn more biomedcentral.com/submissions Ready to submit your research Ready to submit your research ? Choose BMC and benefit from: ? Choose BMC and benefit from: • fast, convenient online submission • thorough peer review by experienced researchers in your field • rapid publication on acceptance • support for research data, including large and complex data types • gold Open Access which fosters wider collaboration and increased citations maximum visibility for your research: over 100M website views per year • At BMC, research is always in progress. Learn more biomedcentral.com/submissions Ready to submit your research Ready to submit your research ? Choose BMC and benefit from: ? Choose BMC and benefit from: 42. Tavakoli H. A dictionary of research methodology and statistics in applied linguistics. Tehran: Rahnama Press; 2013. 42. Tavakoli H. A dictionary of research methodology and statistics in applied linguistics. Tehran: Rahnama Press; 2013. 43. Schneider S, Holzwarth B. Gesundheit in der Stadt und auf dem Land. Prävention und Gesundheitsförderung. 2020;16(1):41–6. References 1. European Agency for Safety and Health at Work. Motivation for employ‑ ees to participate in workplace health promotion. Bilbao: Literature Review; 2012. p. 1831–9351. 2. Peltomäki P, Johansson M, Ahrens W, Sala M, Wesseling C, Brenes F, et al. Social context for workplace health promotion: feasibility considerations in Costa Rica, Finland, Germany, Spain and Sweden. Health Promot Int. 2003;18(2):115–26. 3. Bell A, Barrett N, Lamaro HG. "The Ripple Effect": The influence of social support on participation in a small workplace health promotion program. Health Promot J Austr. 2021;33(2):470–9. 1. European Agency for Safety and Health at Work. Motivation for employ‑ ees to participate in workplace health promotion. Bilbao: Literature Review; 2012. p. 1831–9351. 19. Moebus S. Gebaute Stadt und Gesundheit - Bedeutung und Implika‑ tionen für die Prävention und Gesundheitsförderung. In: Tiemann M, Mohokum M, editors. Prävention und Gesundheitsförderung. Springer Reference Pflege – Therapie – Gesundheit. Leverkusen, Furtwangen: Springer Reference Pflege – Therapie – Gesundheit; 2021. p. 221–36. 2. Peltomäki P, Johansson M, Ahrens W, Sala M, Wesseling C, Brenes F, et al. Social context for workplace health promotion: feasibility considerations in Costa Rica, Finland, Germany, Spain and Sweden. Health Promot Int. 2003;18(2):115–26. 2. Peltomäki P, Johansson M, Ahrens W, Sala M, Wesseling C, Brenes F, et al. Social context for workplace health promotion: feasibility considerations in Costa Rica, Finland, Germany, Spain and Sweden. Health Promot Int. 2003;18(2):115–26. 20. Christmann GB. Analysing changes in discursive constructions of rural areas in the context of demographic change. Towards counterpoints in the dominant discourse on “dying villages”. Comparative Popul Stud. 2017;41(3–4):359–78. 3. Bell A, Barrett N, Lamaro HG. "The Ripple Effect": The influence of social support on participation in a small workplace health promotion program. Health Promot J Austr. 2021;33(2):470–9. 3. Bell A, Barrett N, Lamaro HG. "The Ripple Effect": The influence of social support on participation in a small workplace health promotion program. Health Promot J Austr. 2021;33(2):470–9. Page 10 of 10 Lindert et al. BMC Health Services Research (2022) 22:681 Lindert et al. BMC Health Services Research (2022) 22:681 21. Kubis A, Fuchs J, Konle-Seidl R, Rauch A, Tophoven S, Tisch A, et al. Demo‑ grafie und Erwerbsbeteiligung. In: Möller J, Walwei U, editors. Arbeits‑ markt kompakt. Bielefeld: W. Bertelsmann Verlag; 2017. p. 22–34. 22. Slifkin RT. Developing policies responsive to barriers to health care among rural residents: what do we need to know? J Rural Health. 2002;18(Suppl):233–41. 23. References Weinhold I, Gurtner S. Understanding shortages of sufficient health care in rural areas. Health Policy. 2014;118(2):201–14. 24. Young AE, Cifuentes M, Wasiak R, Webster BS. Urban-rural differ‑ ences in work disability following occupational injury: are they related to differences in healthcare utilization? J Occup Environ Med 2009;51(2):204–12. 25. Marotz-Baden R, Colvin PL. Coping strategies: a rural–urban comparison. Fam Relat. 1986;35(2):281–8. 26. Harvey DJ. Understanding Australian rural women’s ways of achieving health and wellbeing - a metasynthesis of the literature. Rural Remote Health. 2007;7(4):823. 27. Gensicke M, Tschersich N. BIBB/BAuA-Erwerbstätigenbefragung 2018 Methodenbericht [BIBB/BAuA Employment Survey - Method Report]. Munich: Kantar Public; 2018. 28. Infratest Sozialforschung. SOEP 2000 - Methodenbericht erste Welle der SOEP Stichprobe F zum Befragungsjahr 2000 (Welle 17) des Sozio-oekon‑ omischen Panels. SOEP Survey Papers 37: Series B. Berlin: DIW/SOEP; 2011. 29. Rohrbach-Schmidt D, Hall A. BIBB/BAuA-Erwerbstätigenbefragung 2018. 1st ed. Bonn: Bundesinstitut für Berufsbildung; 2020. 30. Karasek RA. Job demands, job decision latitude, and mental strain: impli‑ cations for job redesign. Adm Sci Q. 1979;24:285. 31. Siegrist J. Stress in the workplace. New Blackwell Companion Med Sociol. 2009;268-87. 32. Cottini E, Lucifora C. Mental health and working conditions in Europe. ILR Rev. 2013;66:958–88. 33. Bundesanstalt für Arbeitsschutz und Arbeitsmedizin (BAuA). Stressreport Deutschland 2019. Psychische Anforderungen, Ressourcen und Befinden. Dortmund; 2020. 34. Luchman JN, Gonzalez-Morales MG. Demands, control, and support: a meta-analytic review of work characteristics interrelationships. J Occup Health Psycho. 2013;18:37–52. 35. Zhang X, Smith DR, Zheng Y, Wang RS. Occupational stress and psychoso‑ matic complaints among health professionals in Beijing, China. Work. 2011;40(2):239–45. 36. Schöllgen I, Schulz A. Psychische Gesundheit in der Arbeitswelt. Emotion‑ sarbeit. Dortmund/Berlin/Dresden: Bundesanstalt für Arbeitsschutz und Arbeitsmedizin (BAuA); 2016. 37. Haar JM, Russo M, Suñe A, Ollier-Malaterre A. Outcomes of work–life bal‑ ance on job satisfaction, life satisfaction and mental health: a study across seven cultures. J Vocat Behav. 2014;85(3):361–73. 38. Stab N, Schulz-Dadaczynski A. Arbeitsintensität: Ein Überblick zu Zusam‑ menhängen mit Beanspruchungsfolgen und Gestaltungsempfehlungen. Zeitschrift für Arbeitswissenschaft. 2017;71(1):14–25. 39. Rothe I, Adolph L, Beermann B, Schütte M, Windel A, Grewer A, et al. Psychische Gesundheit in der Arbeitswelt. Wissenschaftliche Standort‑ bestimmung. Dortmund/Berlin/Dresden: Bundesanstalt für Arbeitsschutz und Arbeitsmedizin (BAuA); 2017. 40. Kähler W-M. Statistische Datenanalyse: Verfahren verstehen und mit SPSS gekonnt einsetzen. 3rd ed. Wiesbaden: Vieweg+Teubner Verlag; 2004. 40. Kähler W-M. Statistische Datenanalyse: Verfahren verstehen und mit SPSS gekonnt einsetzen. 3rd ed. Wiesbaden: Vieweg+Teubner Verlag; 2004. 41. Bortz J, Schuster C. • fast, convenient online submission • thorough peer review by experienced researchers in your field • rapid publication on acceptance • support for research data, including large and complex data types • gold Open Access which fosters wider collaboration and increased citations maximum visibility for your research: over 100M website views per year • At BMC, research is always in progress. Learn more biomedcentral.com/submissions Ready to submit your research Ready to submit your research ? Choose BMC and benefit from: ? 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G. de Grooth: Hotelbedrijfsleer. Uitgave: Ned. Uitg. Mij. Leiden, 1947, 209 blz. door Drs W J v d Woestijne door Drs. W. J. v. d. Woestijne door Drs. W. J. v. d. Woestijne De schrijver schrijft als practijkman voor de practijk en geeft een aardig beeld van de veelzijdigheid van het hotelbedrijf. Hij baseert zich daarbij op een grote ervaring maar komt nergens boven deze uit. Zijn leerlingen aan de Horeca-vakschool zullen er verschillende goede wenken in vinden, die hen, vooral in het verkeer met de gasten, te pas zullen komen. De bedoeling van de schrijver is blijkbaar niet geweest een bijdrage te leveren voor de administratieve inrichting van een hotel, hoewel opmerkingen in die richting natuurlijk niet ontbreken. Hij houdt een pleidooi voor goede kostprijs-berekening, waarmede wij in principe gaarne instemmen, maar wij moeten de uitwerking daarvan voor rekening van de schrijver laten. Op blz. 170/,1 geeft hij een voorbeeld van een prijsberekening voor een nacht logies bij een bezetting van 60 %, maar vergist zich daarbij doordat hem het onderscheid tussen procenten beneden en boven de honderd niet duidelijk is. Inplaats van de kostprijs bij volledige bezetting door 0,6 te delen vermenigvuldigt hij deze met 1,4. Dat dit fout is blijkt duidelijk, indien wij een normale bezetting van 50 % als uitgangspunt nemen. De kostprijs is dan niet 1,5, doch 2 maal de gemiddelde prijs bij volle bezet­ ting. Dientengevolge komt hij tot een prijs van ƒ 5r—-, terwijl deze ƒ 6,—• zou moeten zijn. D h ij ij t l d l i d ilijkh d j De schrijver wijst wel op de vele en gevarieerde moeilijkheden, waar de practijkman voor komt te staan, maar dringt tot de bedrijfseconomische kern van de problemen niet door. Hij bewijst daarmede, dat er op dit terrein nog zeer veel bedrijfseconomische research-arbeid verricht zal moeten worden om aan het hotelbedrijf het noodzakelijk fundament te leveren. J. v. d. Plas. De Schadeverzekeringmaatschappij. Haar bedrijf, organi­ satie, administratie en boekhouding. Derde druk. Nederl. Uitgevers­ maatschappij N.V. Leiden. 377 blz. door G. P. J. Hogeweg door G. P. J. Hogeweg door G. P. J. Hogeweg Bij de eerste druk deelde de schrijver mede, dat dit boek bestemd was om de belangstellende lezer een inzicht te geven in het bedrijf van de Schadeverzekering Mij. en dat daarom ter wille van een goed begrip van de organisatie, de administratie en de boekhouding een korte algemene inleiding en behandeling van de diverse in de practijk voorkomende scha- deverzekeringsvormen vooraf ging. BOEKBESPREKING BOEKBESPREKING BOEKBESPREKING G. de Grooth: Hotelbedrijfsleer. Uitgave: Ned. Uitg. Mij. Leiden, 1947, 209 blz. door Drs W J v d Woestijne G. de Grooth: Hotelbedrijfsleer. Uitgave: Ned. Uitg. Mij. Leiden, 1947, 209 blz. door Drs W J v d Woestijne Die korte inleiding beslaat in de derde druk, die thans voor ons ligt, meer dan de helft van het boek, maar om 42 verzekeringsvormen toe te lichten is deze omvang zeker nodig. Het komt mij voor, dat de schrijver daarin geslaagd is. N lijk d l id d fd li h d j , j g g Natuurlijk moet de leider van een der afdelingen van een schadever­ zekeringmaatschappij meer van de usanties weten, maar voor de belang­ stellende lezer, waaronder zeker ook accountants gerekend mogen wor­ den, geeft het gebodene een goed inzicht, ook omdat de bijgevoegde mo­ dellen van in de praktijk gebruikte formulieren een nuttige aanvulling zijn. Dat ook de berekening van poliszegel en de afwijkende regeling van de omzetbelasting behandeld wordt, verhoogt het belang van deze uiteen­ zetting voor de lezers van dit blad. m a b blz. 25 Het hoofdstuk Organisatie geeft een duidelijk inzicht in deze materie. Zowel het beursbedrijf als het provinciale bedrijf wordt beschreven en het optreden van gevolmachtigden en agenten en makelaars. Ook de organisatie van het gehele verzekeringswezen heeft de aandacht, waarbij de vrije verenigingen, zowel als de Hoofdgroep en Vak- en Ondergroepen ter sprake komen. I h h fd k d Ad i i i b h d l d h ij h p In het hoofdstuk over de Administratie behandelt de schrijver het vast­ leggen vande contracten voor verschillende soorten van verzekeringen en de controle op de volledigheid daarvan, alsook op de inning der premiën. Ook deze uiteenzettingen worden met een groot aantal modellen toege­ licht, waarbij ook de nodige aandacht aan de behandeling van schaden en aan statistische overzichten wordt gegeven. T l b h d l h fd k IX d B kh di i i O g g Tenslotte behandelt hoofdstuk IX de Boekhouding in engere zin. Op de noodzakelijke interne controle wordt gewezen, en hoe die wordt ver­ kregen zet de schrijver uiteen. Op dit punt had ik gaarne wat meer na­ druk gelegd willen zien. D h ij di h h l i d k ijk b h d l b h ijf i g g De schrijver, die het geheel uit de praktijk behandelt, beschrijft m.i. te veel het „hoe” en te weinig het „waarom”. G. de Grooth: Hotelbedrijfsleer. Uitgave: Ned. Uitg. Mij. Leiden, 1947, 209 blz. door Drs W J v d Woestijne O k bij bij d b li d P i l d Ri i k t g Ook bijv bij de bepaling van de Premiereserve voor lopend Risico komt dit duidelijk uit. De vaststelling van een percentage van de nettopremie voor eigen rekening op 50 % of op 40 % op grond van „ervaring” in het verleden, wordt wel toegelicht, maar het gevaar hieraan verbonden, door­ dat de verhouding tussen korte en langlopende posten verandert, wordt niet naar voren gebracht. H l d l d h d k i h ij g Hoewel de accountantscontrole op de schadeverzekeringmaatschappijen natuurlijk niet wordt behandeld, geeft de schrijver met Model No. 70 wel een voorbeeld van een te publiceren accountantsverklaring. De derde en vierde alinea, die mededelen, dat de accountant zich van de aanwezig­ heid van de effecten en van de juistheid der vorderingen heeft overtuigd, en waarin de waardebepaling der effecten wordt toegelicht, zijn m.i. over­ bodig, maar het is niet te ontkennen, dat nog vele accountants op die wijze tegemoetkomen aan het verlangen van het bestuur der gecontroleerde onderneming. Ik k k i ki di b k d d g Ik kan kennismaking met dit boek aan accountants en studerenden aan­ bevelen. Handleiding ten dienste van Assistent-Accountants door P. Hoogwout. Tweede druk 110 blz. Neder!. Uitgeversmaatschappij, Leiden. Handleiding ten dienste van Assistent-Accountants door P. Hoogwout. Tweede druk 110 blz. Neder!. Uitgeversmaatschappij, Leiden. door G. P. J. Hogeweg door G. P. J. Hogeweg In dit boek heeft de schrijver ten dienste van assistent-accountants een uiteenzetting gegeven van de inrichting van het contrôle-dossier, zowel als van de wijze, waarop de controle van de verschillende boeken van een handelszaak z.i. dient te geschieden, en waarop de assistent in elk bijzon­ der geval dient te letten. K i i d it tti d h ij i g Kennisneming van de uiteenzettingen van de schrijver is voor een beginnend assistent en voor studerenden voor de accountants-examens aan te bevelen. Zij zullen er zin voor orde in de dossiers uit leren en hun verantwoordelijkheidsgevoel zal er door worden versterkt. S h ij h ft i h bij ij b h d li di d i i t ti j g Schrijver heeft zich bij zijn behandeling een eenvoudige administratie met de gewone hulpboeken gedacht, maar behandelt de daarbij voor­ komende contróle-werkzaamheden uitvoerig, zodat de assistent, die zich deze beschrijving goed eigen gemaakt heeft, ook zal weten wat in die m a b blz. 26 m a b blz. 26 m a b blz. 26 gevallen gedaan moet worden, waarin de accountant een werkplan heeft voorgeschreven met andere maatregelen, dan de hier behandelde. D i l d d l hi l b kh di f d g g De invloed op de controle van een machinale boekhouding of een door­ schrijf methode heeft de schrijver niet behandeld, maar waarschijnlijk heeft hij dit aan het oordeel van de accountant, die de leiding van de controle heeft, willen overlaten. Die invloed toch is groter op het werk­ plan, dan op de wijze van uitvoering van het werk door de assistent. D h k d d d d d i p p j g Dat het werk door de accountant over eerste, tweede en derde assis­ tenten verdeeld wordt, en dat de beginneling niet alle in het boek beschre­ ven werkzaamheden te doen krijgt, heb ik er niet in gevonden, maar dat zal de assistent in de praktijk wel merken. REPERTORIUM VAN LITERATUUR OP HET GEBIED VAN ACCOUNTANCY EN BEDRIJFSHUISHOUDKUNDE R Redactie: Centrale Documen­ tatiedienst inzake be­ drijfsorganisatie N.V. (C.D.B.) II. HET ACCOLINTANTSBEROEP Enige opmerkingen over mogelijkheden en wenselijkheden van een verbijzondering in de uitoefening van het accountantsberoep S h f f d Al h i lijk d b h d li g p S c h r o e f f, H. J. v., d. ■—■ Alvorens tot het eigenlijke onderwerp van behandeling over te gaan geeft schr. een enkel woord ter aflijning van beide richtingen van ver­ bijzondering, differentiatie en specialisatie. W at betreft de mogelijkheden van specia­ lisatie is schr. kort: de nadelen van toepassing hiervan in het accountantsberoep over­ treffen verre de voordelen. Een uitvoerige en systematische behandeling van de moge­ lijkheden van differentiatie, waarbij schr. een diepgaande analyse geeft van de voor- en nadelen van deze vorm van verbijzondering, met name de verbijzondering op de advi­ serende functie van de accountant. A II 1 M dbl d A B d ijf h i h dk d 21 N 9 A II 1 Maandblad voor Accountancy en Bedrijfshuishoudkunde 21, No. 9 October 1947 Selling budgetary control to the supervisor M h F J Th h f Selling budgetary control to the supervisor Mut h, F. J. — The author starts from the point of view that responsibilty for cost control and cost reduction does not lie with a few top executives. The super­ visors should be encouraged to offer for review the particular difficulties encountered in operating under their controls and their recommendations for improvement of proce­ dure, and to base their plans for future operation on the premise that past practice is not always the best practice and that performance can become more effective through constant improvement of methods. Supervisors should be aware that the possibilities of obtaining fruitful suggestions for cost reductions from the individual workers are un­ limited. Workers should therefore be encouraged to bring to their superiors ideas on better ways to do the job which in turn can lead to developments resulting in major cost reductions. A number of self-questions are summed up. A IV 1 The Management Review XXXVI, No. 9, September 1947 q p A IV 1 The Management Review XXXVI, No. 9, September 1 q p The Management Review XXXVI, No. 9, September 1947 Analyzing and determining the workload W 1i H L U i i l IV. LEER VAN DE CONTROLE Selling budgetary control to the supervisor M h F J Th h f Analyzing and determining the workload W 1i H L U i i l W y 1 i e, H. L. — Using practical examples the author shortly discusses the deter­ mination of the workload (that means the volume of paperwork) and its analysis, which logically covers two aspects: the long-range aspect, which has to do with anticipated volume paperwork and the seasonal variation, if any, of the anticipated volume; the short-range aspect which has to do with daily fluctuations in volume and special assignments of a non-repetative nature. A IV 1 Th M R i O b 1947 The Management Review, October 1947 The Management Review, October 1947 m a b biz. 27
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Procesos de subjetivación cuentos de tradición oral y relatos contractualistas de la modernidad
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Procesos de subjetivación cuentos de tradición oral y relatos contractualistas de la modernidad Subjectivation procestings. Oral tradition tales and in the modern philosophies contractualist speeches Gonzalo Díaz Troya1, ORCID https://orcid.org/0000-0002-5093-4253 1 Profesor de la Universidad Laica “Eloy Alfaro” de Manabí. gonzalodiaztroya@hotmail.com Recepción: 14 de Septiembre de 2019 / Aceptación: 28 de diciembre del 2019 / Publicación: 29 de enero del 2020 Citación/como citar este artículo: Díaz, G. (2020). Procesos de subjetivación. Cuentos de tradición oral y relatos contractualistas de la modernidad. Rehuso, 5(1), 118- 129. Doi: 10.5281/zenodo.6796121 118 ReHuSo: Revista de Ciencias Humanísticas y Sociales e-ISSN 2550-6587 https://revistas.utm.edu.ec/index.php/Rehuso/index Vol. 5 Núm. 1 (118-129) Enero – Abril 2020 rehuso@utm.edu.ec Universidad Técnica de Manabí DOI: 10.5281/zenodo.6796121 Resumen El tema del poder entraña cuestiones complejas para el pensamiento filosófico. A partir de las reflexiones y trabajos de Michel Foucault, el asunto del poder ha sido repensado con mayor grado de intensidad. No hay una noción clara del poder, ni mucho menos este es un concepto prístino, pero se puede averiguar cómo en las relaciones humanas la posición de dominador o dominado abarca distintos aspectos de la vida. En el inconsciente colectivo deambulan elementos del poder que perpetúan sistemas de dominación. Asimismo, los discursos que se despliegan en la sociedad justifican un determinado orden de las relaciones de poder. Los cuentos de tradición oral narran acontecimientos fantásticos que, sin embargo, corresponden a realidades políticas, pues respaldan una determinada forma de ejercer y perpetuar la dominación. Lo mismo se puede decir de los relatos contractualistas brindados por la filosofía política moderna. Existe una estrecha relación de similitud no estrictamente narrativa, pero sí discursiva, entre los cuentos de tradición oral y la filosofía contractualista. Palabras clave: Contractualismo; cuentos; dominación; inconsciente; poder. Abstract Power’s theme involves complex issues for the philosophical thinking. Since Michel Foucault’s reflections and works, the matter of power has been rethinking with grate major intensity. There is not a clear notion of the power, anything less it is a pristine concept, but it is possible find out how inside the human relations the dominator position or of dominated span several features of the life. In the collective unconscious goes around power’s elements that keep domination systems. Likewise the speeches that opens in society out it substantiate a domination determinate order. However, the oral tradition tales narrate fantastic happenings that tally to politic realities, being as they back up a determinate way of practicing and holding the power. The same it is possible to tell about contractualist speeches brought up by political modern tradition. There is a close relation, not strictly narrative but it does discursive between the oral tradition tales and the contractualist philosophy. Keywords: Contractualism; domination; power; tales; unconscious. 119 Díaz Gonzalo. Procesos de subjetivación cuentos de tradición oral y relatos contractualistas de la modernidad. Introducción En junio de 2012 se publicó el libro titulado “Hay chismes que parecen cuentos pero hay cuentos que no son chismes” (Díaz, 2012). En él se recopilan cuarenta cuentos de tradición oral del cantón El Carmen, provincia de Manabí. Aquella experiencia permitió a su autor conocer a las personas que contaban cuentos y percibir de primera mano las vivencias que al contarlos en ellas despertaban. Y es que el que cuenta lo hace con convicción plena de que el acontecimiento que observó, o que le contaron, se reviste de un carácter extraordinario y, porque sucedió así, merece la pena ser narrado. Según se percibe y escucha, existe un acuerdo tácito de que narrar y escuchar cuentos robustece la identidad y valores cultural de una nación. Sin embargo, poner entre paréntesis la aparente e inocente fuente de bondad que emanaba de los cuentos y pensarlos desde la perspectiva de la institución del poder político, ha permitido realizar un acercamiento al papel que han podido jugar en los procesos de legitimación del poder. Para lograr aquello, se buscó establecer analogías con los relatos contractualistas de la modernidad a fin de sugerir algún tipo de paralelismo que pueda existir entre los dos tipos de relatos, paralelismo que permita vislumbrar una función semejante destinada a establecer relaciones de dominación. Metodología (Materiales y métodos) Se ha hecho uso de la investigación documental y la investigación de campo. Con la primera se ha establecido las bases teóricas sobre las que se asienta el estudio; la segunda, permitió recopilar cuarenta cuentos de tradición oral directamente de sus narradores, en el cantón El Carmen, provincia de Manabí (Ecuador). El texto en el que se recogió los cuentos en referencia se hace constar en la bibliografía. Con estos dos insumos se realiza un ejercicio hermenéutico a fin de poder establecer analogías entre los cuentos de estudio y los relatos contractualistas de la modernidad. Resultados Según los principales contractualistas de la modernidad (Hobbes, Locke y Rousseau), originariamente el hombre vivía en un estado de naturaleza. Aquella condición lo exponía a una serie de riesgos e inseguridades que hacían peligrar hasta lo más preciado que tenía: la vida. Aquella situación lo impulsó a contratar, es decir, llegar a acuerdos a fin de establecer un contrato mediante el cual se comprometían a respetar lo establecido en él en aras del bien que se esperaba recibir. Gracias a aquello, nace el estado civil o existencia jurídica de la sociedad. Como se observará, este proceso tiene tres momentos: Figura 1. Momentos de los relatos contractualistas de la modernidad En lo que respecta a los cuentos de tradición oral, es muy común que el relato inicie en circunstancias en que sus personajes se encuentran en una situación de incertidumbre, miedo e inseguridad. Frente a ese escenario el hombre hace suya la normatividad emanada de Dios. Hecho aquello, la situación inicial desaparece e ingresa en un estado deseable. Como se observará, este proceso presenta tres momentos: 120 ReHuSo: Revista de Ciencias Humanísticas y Sociales e-ISSN 2550-6587 https://revistas.utm.edu.ec/index.php/Rehuso/index Vol. 5 Núm. 1 (118-129) Enero – Abril 2020 rehuso@utm.edu.ec Universidad Técnica de Manabí DOI: 10.5281/zenodo.6796121 Figura 2. Momentos de los cuentos de tradición oral objeto de estudio Ahora bien, desde el punto de vista formal cuentos y relatos contractualistas tienen una estructura similar. Esto es, primero, ambos parten de una situación de indefensión; segundo, necesidad de recurrir a algo o alguien que ayude a superar la situación inicial; y, tercero, un estado de bienestar. Si se les da una mirada de fondo, se aprecia tres componentes fundamentales: Figura 3. Momentos de los cuentos de tradición oral objeto de estudio Como se aprecia, el elemento central es condición fundamental para ordenar los actos de los hombres conforme a lo establecido por la autoridad. La obediencia se torna ineludible si se espera ascender a un estado que supere al de indefensión. Discusión El análisis de los cuentos remite a los individuos reales, su acción y condiciones materiales de vida, tanto las encontradas como las engendradas por su propia acción, diría Marx (1974). Realizar un ejercicio para desmontar el andamiaje que subyace detrás de los cuentos de tradición oral, mundo poblado de ángeles y demonios, lucha entre el bien y el mal, dioses y demonios misericordiosos pero cruentos a la vez, resulta muy sugerente para establecer analogías entre cuentos y relatos contractualistas. Las prácticas sociales generan un tipo de discurso, el discurso político. Este discurso surge de unas condiciones concretas de existencia, cuyas características son en sí mismas discurso. La realidad en su totalidad es a la vez discurso y manifestación de discursos. El poder genera relatos que invaden toda la esfera de la existencia humana, estos cubren y se presentan como el único discurso posible. La noción de discurso intenta relevar la imbricación entre los dispositivos culturales de significación, las prácticas sociales y la constitución del sujeto (…) como advierte Laclau y Mouffe (…) no es pertinente realizar una distinción tajante entre el discurso y la práctica, como si el discurso sólo fuera un habla sin efectos en la realidad social; más bien, el vínculo entre ambas dimensiones supone que toda práctica social está inscrita en un lenguaje y que todo lenguaje es, una práctica social. De este modo es posible, como indica Ortí, relacionar la orientación ideológica de los discursos con la génesis y la reproducción de los procesos sociales. (Parrini, 2007, p.22-23) 121 Díaz Gonzalo. Procesos de subjetivación cuentos de tradición oral y relatos contractualistas de la modernidad. El asunto remite a abordar el tema del poder desde lo político; se lo define como la capacidad que un individuo o grupo de individuos tiene para modificar la conducta de un individuo o grupo de individuos a fin de generar estados de dominación y consecuentemente de obediencia. Es muy común escuchar frases como “este país es el más poderoso del mundo”, “esta es la empresa más poderosa del mundo”, “este es el hombre más poderoso del mundo” (el más rico) o “el hombre más poderoso del partido”. Pero también es frecuente oír: “el más poderoso del barrio”, “el más poderoso de la familia”, “el más poderoso del club”. Todas estas afirmaciones implican pensar en la existencia del poder, no como una realidad abstracta, sino como una realidad ante la que nos tenemos que ver en cada momento. El poder forma parte de la cotidianidad, por tanto, la misma definición de poder tendrá como una de sus particularidades ir en correspondencia con ese ámbito de la realidad. Dicho de otro modo, la forma en que nos representemos el poder determinará el discurso. Desde esta perspectiva, sería conveniente utilizar en sentido foucaultiano la expresión “relaciones de poder”; esto es, que todos en una medida u otra estamos revestidos de poder, desde el hombre común o el país más poderoso del mundo, pasando por las relaciones laborales, las institucionales o familiares, hasta el joven que trata de mantener control dentro de un grupo insignificante. Estamos hablando de un modo de ser de la sociedad. Ese modo de ser de la sociedad no se ha generado espontáneamente, es más, no se puede concebir que un fenómeno tan evidente como lo es el del ejercicio del poder tenga un origen espontáneo, como concebido por obra y gracia de no sé qué espíritu. El poder es discurso y como tal, nace de condiciones reales de existencia. Y estas condiciones reales de existencia tienen que ver con un conjunto sistemático de ideas que se han ido dando forma (construcción) según intereses de clase. Esa misma clase dice qué entender por poder y, consecuentemente, es concebido como mecanismo de reproducción de su modelo de ideas. Aquello se caracteriza en el momento actual en lo que se ha dado por llamar (…) pensamiento positivo que, como los textos de autoayuda, induce a los sectores populares a internalizar los valores y apetencias de los potentados. De ese modo se busca que la mercantilización del mundo y la guerra de todos contra todos parezcan cuestiones propias del sentido común, para que terminen aunados las víctimas y los victimarios o que prosperen mecanismos neuróticos como los de la identificación con el agresor, la negación de la realidad y otras alteraciones por el estilo (Biagni, 2019, p.110). Ahora bien, si el poder no reside en una forma absoluta, y si no se encarna en una figura represora, entonces, ¿dónde se traslada la esencia del poder? Tal como se puede apreciar en las prácticas sociales, el poder se encuentra difuminado entre los individuos. Así, no es un poder único el que controla. Todos, en menor o mayor medida, controlan, vigilan y establecen relaciones de dominación; cada quién desde su sitio, por más insignificante que este sea. Muy habilidosamente se ha echado mano de esa disposición del ser humano a desear siempre controlar sus circunstancias. Además de ejercer poder desde la parcela que le corresponde a cada cual en cuanto individuo dueño de su propia vida, también, a los sujetos les interesa erigirse con poderes que controlan otros recovecos de la existencia humana y los entornos social y natural. El modelo está establecido. De lo contrario ¿cómo entender que las sociedades actuales conduzcan sus acciones bajo la creencia de que viven en una civilización ordenada por leyes 122 ReHuSo: Revista de Ciencias Humanísticas y Sociales e-ISSN 2550-6587 https://revistas.utm.edu.ec/index.php/Rehuso/index Vol. 5 Núm. 1 (118-129) Enero – Abril 2020 rehuso@utm.edu.ec Universidad Técnica de Manabí DOI: 10.5281/zenodo.6796121 que funcionan, más o menos bien, y que todos deben actuar en consecuencia según el modelo que ella establece? Se está frente a un discurso que propugna un modelo único, que marca la abolición de lo diferente; en que el otro, según afirma Han (2017), es visto como una negatividad que, una vez superada, de paso a la positividad de lo igual. Esta proliferación de lo igual atraviesa y aqueja a todo el cuerpo social. En realidades concretas, por ejemplo, el alcance global del capitalismo va más allá de apertura y de conquista, es una visión, según Žižek (2017), de un mundo encerrado en sí mismo, que hace una clara distinción entre el interior de su exterior, de los que están protegidos por la esfera y de los que se encuentran fuera de su cobertura. Los relatos contractualistas de la modernidad nos dan una idea clara del asunto. Según la hipótesis que ensayan, los hombres originariamente vivían en un estado de naturaleza. Fue necesario imaginar las circunstancias en las cuales el hombre vivía para poder, desde allí, establecer una concepción de hombre que permitiera explicar las determinaciones que el hombre contemporáneo mostraba a los relatores y los requerimientos que esa misma sociedad denunciaba. No resulta muy extraño, entonces, que lo expuesto en los relatos contractualistas conlleve una concepción de poder en la que hay que mantener un orden y un sistema de sujeción y obediencia. La realidad misma, concebida hasta en sus materializaciones más mínimas hablaría, en consecuencia, sobre aquello. Esa misma forma ha operado hasta nuestros tiempos. No se puede concebir un entramado ideológico que opera desde un mundo de la ideas. No se puede concebir un entramado ideológico que afecte únicamente a una determinada área de la existencia humana. La ideología necesita estar inmersa en el mundo de la cotidianidad, encarnarse en seres humanos reales. La construcción de lo real reclama a gritos la correspondencia para obtener eficacia. Por ende, las determinaciones, facetas y características de una sociedad expresa el modelo de dominación prevaleciente en ella. Las configuraciones normativas y estéticas de las instituciones, las formas más insignificantes en que los individuos viven su cotidianidad, tradiciones seculares, rituales religiosos y expresiones alegóricas, aportan información sobre las articulaciones de poder existentes en el complejo social donde se producen las relaciones. De lo contrario, por ejemplo, sería incompresible pensar cómo puede funcionar un modelo liberal de organización de la realidad bajo la égida de un sistema económico que interviene hasta las instancias más íntimas del individuo. En los actuales momentos, el modelo económico opera tan sutilmente que hace que se concibe al poder ya no como lucha de uno contra otro para dominarlo; por el contrario, se ha incrustado en el interior del sujeto una concepción de poder que se revela en la figura de autoexplotación. De allí frases estereotipadas como: sé un emprendedor, sé tu propio jefe, entre otras. Postular que todos por naturaleza somos libres y que, por tanto, no hay cabida para amos y señores, resulta discutible si se enfocan los condicionamientos a los que a menudo, de forma inconsciente, están expuesto los individuos desde el momento de su nacimiento. En la misma expresión de la libertad natural está impregnada su contradicción, pues no hay nada más determinante para los sujetos que la propia naturaleza. ¿Cómo cabe considerar a un hombre libre cuando hay un marco ideológico que marca la concepción misma de la libertad? La misma afirmación que hace referencia a los derechos naturales que posee el hombre, responden a un punto de vista muy particular, desde el cuál se interpreta la realidad. E incluso, por decir lo contrario, el mismo hecho de afirmar que los derechos nacen como fruto de acuerdos responde a una forma de ordenamiento del discurso desde una orientación predeterminada. La misma 123 Díaz Gonzalo. Procesos de subjetivación cuentos de tradición oral y relatos contractualistas de la modernidad. concepción antropológica que podemos tener del hombre, por ejemplo, de aquel que al ser gobernado por sus pasiones se convierte en un enemigo para otros hombres, puede enfocarse también desde la perspectiva del buen salvaje, del hombre que no es ni bueno ni malo sino un ser inocente susceptible de ser maleado por la sociedad. Aquello que nos lleva a pensar que somos el producto de lo que otros han querido hacer de nosotros se correspondería con el segundo enfoque. Esto es, no hay actos indiferentes. Ahora bien, si nos introducimos al interior de esa realidad construida observaremos que preconiza una visión moral que tiende a exaltar el comportamiento humano moviéndose entre dos polos: el bien y el mal. De allí que un sistema de premios, recompensas y castigos son la dinámica que subyace al interior de los procesos que tienden a modelar el comportamiento humano. Una serie de dispositivos -entre otros, la institución educativa, el concepto de poder y verdad que promueven las tic- que funcionan como mecanismos de integración social entran en juego para modelar (disciplinar) al individuo a fin de hacerlo lábil a la realidad creada. Y el que no, es un inadaptado. La psicología y la psiquiatría se encargarán de él. Sobre qué entender por dispositivo, Martínez y Muñoz (2018) se apoyan en Foucault, al respecto señalan: (…) los dispositivos son articulaciones discursivas que emanan del cruce entre el saber científico y el poder político. Esta noción puede ser entendida en primer lugar como una red de conceptos. (…) en ella se entrecruzan una pluralidad de elementos. Además, el dispositivo no solo produce un entramado conceptual, sino que también produce un conjunto de prácticas propias del orden del discurso (p. 174). Si se parte de ese supuesto, se puede sospechar que las manifestaciones culturales ingresan también al interior de esa misma dinamia. Dispositivos que, haciendo uso de la dimensión simbólica que posee el hombre, configuran un modelo de sujeto funcional a las prácticas sociales. Estos dispositivos generan y mantienen un discurso que de forma sistemática constituye los objetos que refieren. Es una forma de acuñar un mismo discurso que se reproduce continuamente y en la medida que se legitima. Hablar de dispositivos que tienden a disciplinar al sujeto, necesariamente conduce a tratar sobre la dimensión inconsciente de la psiquis. Así como los hombres pueden vivir sus conflictos conscientemente, de igual manera hay conflictos que son vividos de forma inconsciente. Precisamente los conflictos inconscientes surgen de cuestionamientos que les son comunes a todos los individuos. Al respecto, los estudios de Carl Jung (1970) sobre el inconsciente colectivo son bastante ilustrativos, dice: Este inconsciente [colectivo] no es de naturaleza individual sino universal, es decir, que en contraste con la psique individual tiene contenidos y modos de comportamiento que son, cum grano salis, los mismos en todas partes y en todos los individuos. En otras palabras, es idéntico a sí mismo en todos los hombres y constituye así un fundamento anímico de naturaleza suprapersonal existente en todo hombre. (p.10) Para Jung (1970), los contenidos del inconsciente colectivo son arcaicos o primitivos; se los puede llamar también <<représentations collectives>>. Otra expresión muy conocida de los arquetipos es el mito y la leyenda. En este caso se trata de figuras específicamente construidas cuya transmisión se produce a través de largos lapsos de tiempo. Por lo tanto, un concepto arquetípico solo podría aplicarse indirectamente a las representaciones colectivas, ya que en verdad designa contenidos psíquicos no sometidos a elaboración consciente alguna y representa 124 ReHuSo: Revista de Ciencias Humanísticas y Sociales e-ISSN 2550-6587 https://revistas.utm.edu.ec/index.php/Rehuso/index Vol. 5 Núm. 1 (118-129) Enero – Abril 2020 rehuso@utm.edu.ec Universidad Técnica de Manabí DOI: 10.5281/zenodo.6796121 a un dato psíquico todavía inmediato. El arquetipo representa esencialmente un contenido inconsciente, que al conciencializarse y ser percibido cambia de acuerdo con cada conciencia individual en que surge. Se está haciendo referencia a aquella dimensión de la psiquis humana, a aquel tipo de saber del que no se es consciente. Sin embargo, una forma de exteriorizarlo es a través de lo simbólico; al respecto Solares (2011) dice: Como se trata de un mismo proceso, en uno de sus extremos se encuentra el signo o “símbolo enfriado”; en el opuesto, el símbolo evocando una dimensión trascendente, invisible o experimentada como enigma. Existe pues una permanente oscilación y conversión en la gradación entre lo sígnico y lo simbólico como polaridades del proceso de la representación humana del pensamiento. (p.16) Con el objetivo de ilustrar un poco más la temática, Solares (2011) sostiene que: ¿Qué sentido tiene haber nacido? ¿Cuál es el significado de una amistad? ¿Qué le espera al hombre después de la muerte? Este tipo de preguntas –cuyo significado es incierto para los que no cuentan con un referente específico que las signifique de una vez por todas– configuran la materia del símbolo. Su contenido alude al inconsciente, lo trascendente, lo sobrenatural o a todas aquellas cosas “ausentes” y difíciles de percibir que, por definición, son la materia del arte, la religión y el mito: “causa primera”, “fin último”, “finalidad sin fin”, “alma”, “dioses”, “espíritu”. El símbolo alude a una metafísica o bien, como también lo anotan algunos filósofos, toda metafísica es simbólica. El símbolo alude a una realidad abierta difícil de presentar y que por lo tanto sólo puede ser referida de forma simbólica. (p.15) La forma de concebir el poder, la forma como los seres divinos administran el poder, el lugar que el hombre ocupa en ese mundo poblado de ángeles y demonios, así como el modo de vivir su tiempo sagrado y profano, nos remiten a una representación de la realidad en la cual efectivamente el hombre reproduce desde su parcela las mismas condiciones de dominación. El poder como tal, como forma de ejercer dominación y generar obediencia tiende a oscilar entre dos polos: el bien y el mal; el primero identificado con Dios, y el segundo con el demonio [Resulta insinuante hacer dos tipos de agrupaciones por similitudes: la de los espíritus del bien y la de los espíritus del mal; y, por qué no, hombres buenos y hombre malos. En definitiva, los dioses representan las características humanas: mezcla de bondad y malicia]. Sin embargo, en cada uno de estos extremos encontramos que se ejerce un desdoblamiento que cada entidad puede realizar de sí mismo, que le puede otorgar un carácter de bondad como también de maldad. Se lo puede intuir a partir la siguiente cita: El historiador de las religiones que estudia estas teofanías comprueba la existencia de esta tensión dialéctica en el presente de toda intuición religiosa, así como en la evolución temporal de toda religión. De esta manera, el Gran Dios Shiva se desdobla en un sosia energético y antagónico: Kali, que a su vez se desdobla en «bienhechora» y «terrible». El mismo Dios de la Biblia, tanto el Dios del Corán como el de la Cábala, tiene una faz de Rigor y otra de Misericordia. (Durand, 1968, p. 138) 125 Díaz Gonzalo. Procesos de subjetivación cuentos de tradición oral y relatos contractualistas de la modernidad. Resulta comprensible entender el carácter de bondad o rudeza que pueden asumir al discernir los actos humanos y que, ineludiblemente, serán juzgados a efectos de sancionar con premios o castigos, según sea el caso. El tema nos remite a procesos de subjetivación y el papel que estos tienen en la construcción de la realidad. Ahora bien, los procesos de subjetivación son inherentes a todo proceso que tiende a crear un horizonte único para la construcción y explicación de lo real. Los cuentos de tradición oral y relatos contractualitas coadyuvan a ello. Los cuentos de tradición oral vendrían a ser como una exteriorización de una parcela del inconsciente común a todos los hombres, que se exterioriza a través de relatos en los que están involucrados seres espirituales y seres humanos y que desarrollan una trama mediante la cual se puede interpretar la forma en que el ejercicio del poder es percibido por parte de los propios seres humanos. El hecho de que los dioses tengan esa capacidad de juzgar, castigar o premiar, muestra la capacidad que tiene el hombre para trasladar sus atributos a seres ajenos a su tiempo y espacio. En definitiva, la ficción creada no es otra cosa que la exteriorización del drama interno, que yace recluido en lo más profundo de su inconsciente. Ahora bien, los procesos de subjetivación tienen que ver con la manera en que nos constituimos como sujetos y manifestamos nuestra subjetividad. El influjo que el exterior ejerce sobre cada individuo tiende a sintonizar arquetipos residentes en el inconsciente colectivo; esto, según Jung es un componente heredado culturalmente, como una matriz mental que modela la manera de percibir e interpretar las experiencias que le ocurren al individuo. Tratándose de los cuentos de tradición oral o de los relatos contractualistas de la modernidad se pueden establecer analogías entre dos tipos de discursos que guardan estrechas similitudes pero contextualizaciones epistémicas y culturales distintas: los discursos fantástico-ficticios de los cuentos de tradición oral y los discursos hipotético-filosóficos del contractualismo político. Cabe indicar, asimismo, que en ambos casos existe una matriz estructurante que corresponde a un inconsciente colectivo, presente en la herencia cultural que influye decididamente en el inconsciente individual de cada sujeto. No resultaría menos sugerente afirmar que, tanto en los cuentos como en los relatos contractualistas, se pone de relieve un carácter ficcionario que al mismo tiempo cuenta con una materialización de energía psíquica profunda, que entre otros fines va dirigido a explicitar la forma en que el hombre percibe el poder y su ejercicio. Así, no resulta extraño que el relato contractualista hobbesiano sugiera que el “Estado es un artificio creado por la voluntad del hombre. (…) De acuerdo con este filósofo los hombres no nacen con un instinto natural a la sociabilidad, como lo creía Aristóteles; más bien, los hombres son seres aislados, egoístas” (Santilla, 2016, p. 455). Si el símbolo remite al ámbito de la actividad psíquica de representaciones por medio de la imagen o del pensamiento indirecto, es preciso considerar su naturaleza no como un mero signo referido a un objeto, sino como una organización instauradora de realidad, tal como lo denominaba E. Cassirer (como se citó en Estoquera, 1998). Ya en su Antropología filosófica, Cassirer subrayaba que era propio del hombre interpretar la cosa apenas ésta entraba en relación con él. Cuando ello sucedía, el individuo se hacía una representación de la misma a la que podía expresar de diversas maneras, sea a través del signo (cuando la cosa que se refiere puede ser en última instancia presentada); de la alegoría (cuando el significado aunque difícil de presentar puede estar parcialmente representado); o bien, del símbolo (cuando más que del 126 ReHuSo: Revista de Ciencias Humanísticas y Sociales e-ISSN 2550-6587 https://revistas.utm.edu.ec/index.php/Rehuso/index Vol. 5 Núm. 1 (118-129) Enero – Abril 2020 rehuso@utm.edu.ec Universidad Técnica de Manabí DOI: 10.5281/zenodo.6796121 significado hay que preguntarse por el sentido inalcanzable, límite de lo humano y resultado de un inagotable proceso de elaboración sobre lo que se consideran las cuestiones vitales de la existencia). (Solares, 2011, p. 15). En ambos casos, cuentos y relatos contractualistas, sin ser una misma cosa, encierran toda una simbología que remite a la forma como el hombre interpreta sus circunstancias concretas de existencia. De este modo, resulta relevante el concepto de discurso introducido por Ricoeur (2006) (…) como dialéctica del acontecimiento y del sentido: el acontecimiento es la experiencia entendida como expresión, pero es también el intercambio intersubjetivo en sí (…). La experiencia vívida permanece en forma privada, pero su significación, su sentido, se hace público a través del discurso. Solo la dialéctica del sentido y la referencia dice algo sobre sobre la relación entre el lenguaje y la condición ontológica del ser en el mundo. (p. 9-10) El discurso marca el devenir de una sociedad. El hombre asimila y vive según un discurso. Es la única forma como el hombre puede dar sentido y significación a la realidad. Sin embargo, la construcción de un discurso no puede desconocer una perspectiva moral y social que anteponga el respeto al rostro humano y a su dignidad. La inseguridad y la incertidumbre que embargan al hombre de hoy desencadena un sentido del miedo, afecta la mirada sobre la política, lo social, la economía, genera una conciencia que experimenta profundas frustraciones. Con razón Chomsky (2018) señala que la irrupción del neoliberalismo ya hace cuarenta años ha tenido sus efectos: la gente ya no se siente representada, lleva una vida precaria, el resultado es una mezcla de enfado, miedo y escapismo, situación que evidencia un descrédito de las instituciones. El cuento, el discurso neoliberal, convierte en Dios al mercado y es a él a quien hay que adorar y someterse: “Las mercancías, por cuanto mueven el desarrollo económico, determinan los procesos sociales. En ese sentido, se trata de un fenómeno económico, tal como lo pensó Marx, pero, al mismo tiempo, uno político que tiene consecuencias éticas y metafísicas, como establece Coccia” (Capona, 2018, p.193). El pensamiento inquieto y lúcido es consciente de que la historia se está escribiendo con miedo, que se está navegando desprotegido en aguas inseguras. Pide a gritos discursos renovados, una ficción que produzca una nueva realidad, un mundo más humano, más justo. Eso, un nuevo cuento... Conclusiones Los marcos normativos son fundamentales en toda comunidad humana que aspira a desarrollarse de una manera organizada, debido a que regulan derechos y obligaciones que deben ser observados por los ciudadanos tanto individual como colectivamente. Mas es criticable el encubrimiento que a propósito de ellos se puede realizar al poner máscaras que lanzan un velo sobre formas de organización de la sociedad buscando invisibilizar relaciones de superioridad, de poder y violencia, y hasta de explotación. 127 Díaz Gonzalo. Procesos de subjetivación cuentos de tradición oral y relatos contractualistas de la modernidad. Las prácticas sociales generan un discurso político que surge de unas condiciones concretas de existencia que son en sí mismas discurso. Por lo tanto, la realidad en su totalidad es a la vez discurso y manifestación de discursos. El poder genera relatos y estos son presentados como el único discurso posible. Toda práctica social está inscrita en un lenguaje y, este, es una práctica social. El poder genera un discurso y se identifica con ese discurso. Excluye todo discurso diferente. Este discurso nace de condiciones reales de existencia que tienen que ver con un conjunto sistemático de ideas que se han ido construyendo según intereses de clase. Esa misma clase dice qué entender por poder y es concebido como mecanismo de reproducción de su modelo de ideas: ideología. Los cuentos de tradición oral y los relatos contractualistas de la modernidad son dos tipos de discursos que guardan similitud, pero contextualizaciones epistémicas y culturales distintas: los discursos fantástico-ficticios de los cuentos de tradición oral y los discursos hipotéticofilosóficos de los relatos contractualismo de la modernidad. Entre ambos existe una matriz estructurante que corresponde a un inconsciente colectivo, presente en la herencia cultural que influye decididamente en el inconsciente individual de cada sujeto. Visto así, cuentos y relatos contractualistas, ponen de relieve un carácter ficcionario que al mismo tiempo cuenta con una materialización de energía psíquica profunda, que va dirigido a explicitar la forma en que el hombre percibe el poder y su ejercicio. Referencias bibliográficas Biagni, H. (2019). Entre la óptica neuroliberal y el neoliberalismo marqueziano. Utopía y Praxis Latinoamericana, 1(1), 107-116. Recuperado de https://produccioncientificaluz.org/index.php/utopia/article/view/24282/24737 Cápona, D. (2018). El papel político de la superstición y el deseo en Espinpoza.Consideraciones actuales sobre el capitalismo. Ideas y Valores, 67(168), 177-197. Recuperado de https://revistas.unal.edu.co/index.php/idval/article/view/59275/pdf_8 Chomsky, N. (10 de marzo de 2018). La gente ya no cree en los hechos. El País. Recuperado de https://elpais.com/cultura/2018/03/06/babelia/1520352987_936609.html Díaz, G. (2012). Hay chismes que parecen cuentos pero hay cuentos que no son chismes. Manta, Ecuador: Editorial Mar Abierto. Durand, G. (1968). La imaginación simbólica. Buenos Aires: Amorrortu editores Han, B.C. (2016). Sobre el poder. Barcelona: Herder Editorial. Han, B.C. (2017). La expulsión de lo distinto. Barcelona: Herder Estoquera, J. M. (1998). Diccionario de hermenéutica. Bilbao: Universidad de Deusto. Jung, C. G. (1970). Arquetipos e inconsciente colectivo. Barcelona: Editorial Paidós. 128 ReHuSo: Revista de Ciencias Humanísticas y Sociales e-ISSN 2550-6587 https://revistas.utm.edu.ec/index.php/Rehuso/index Vol. 5 Núm. 1 (118-129) Enero – Abril 2020 rehuso@utm.edu.ec Universidad Técnica de Manabí DOI: 10.5281/zenodo.6796121 Martínez, D., y Muñoz, W. (2018). La gubernamentalidad y el dispositivo científico-político del riesgo: la teoría de los factores de riesgo psicosocial. Cinta de moebio, 5(62), 170181. Recuperado de https://cintademoebio.uchile.cl/index.php/CDM/article/view/49460/51935 Marx, C. y Engels, F. (1974). La ideología alemana. Montevideo: Ediciones Pueblos Unidos. Parrini, R. (2007). Panópticos y laberintos. México: El Colegio de México. Ricoeur, P. (2006). Teoría de la interpretación. Discurso y excedente de sentidoMéxico: Siglo XXI Editores. Santillán, J. F. (2016). David Hume y el contractualismo. Política y Sociedad, 53(2), 463-483. Recuperado de https://revistas.ucm.es/index.php/POSO/article/view/48463/48921 Solares, B. (2011). Gilbert Durand, imagen y símbolo o hacia un nuevo espíritu antropológico. Revista mexicana de ciencias políticas y sociales, 56(211), 13-24. Obtenido de http://www.scielo.org.mx/pdf/rmcps/v56n211/v56n211a2.pdf Žižek, S. (2016). La nueva lucha de clases. Barcelona: Anagrama. Contribución de los Autores Autor Gonzalo Díaz Troya Contribución Concepción y diseño, redacción del artículo y revisión del artículo, Adquisición de datos, análisis e interpretación. 129
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English
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An influence of track stiffness discontinuity on pantograph base vibrations and catenary–pantograph dynamic interaction
Studia Geotechnica et Mechanica
2,020
cc-by
8,401
Research Article https://doi.org/10.2478/sgem-2019-0035 received August 20, 2019; accepted November 3, 2019. case when the one-stage vehicle suspension is used, the pantograph base vibrations may increase the number of contact loss events at the catenary–pantograph interface. Abstract: In this article, the computational methodology of the catenary–train–track system vibration analysis is presented and used to estimate the influence of vehicle body vibrations on the pantograph–catenary dynamic interaction. This issue is rarely referred in the literature, although any perturbations appearing at the pantograph– catenary interface are of great importance for high- speed railways. Vehicle body vibrations considered in this article are induced by the passage of train through the track stiffness discontinuity, being a frequent cause of significant dynamic effects. First, the most important assumptions of the computational model are presented, including the general idea of decomposing catenary– train–track dynamic system into two main subsystems and the concept of one-way coupling between them. Then, the pantograph base vibrations calculated for two train speeds (60 m/s, 100 m/s) and two cases of track discontinuity (a sudden increase and a sudden decrease in the stiffness of track substrate) are analyzed. Two cases of the railway vehicle suspension are considered – a typical two-stage suspension and a primary suspension alone. To evaluate catenary–pantograph dynamic interaction, the dynamic uplift of the contact wire at steady arm and the pantograph contact force is computed. It is demonstrated that an efficiency of the two-stage suspension grows with the train speed; hence, such vehicle suspension effectively suppresses strong sudden shocks of vehicle body, appearing while the train passes through the track stiffness discontinuity at a high speed. In a hypothetical Keywords: catenary–train–track system, track stiffness discontinuity, railway vehicle suspension, vibration simulations, catenary–pantograph dynamic interaction. Studia Geotechnica et Mechanica, 2020; 42(2); 111–124 Open Access. © 2020 Danuta Bryja, Adam Hyliński, published by Sciendo. This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 License. Open Access Open Access 1 Introduction The second method, which refers to the track–train system, is intended for analysis of vibrations induced by a train passage through the track stiffness discontinuity [17, 18]. It assumes that the railway track is the Euler– Bernoulli beam resting on a viscoelastic foundation of the Winkler type, and the railway vehicle is a multibody system where wheelsets, bogie frames, and a car body are distinguished. The track with a sudden discontinuity of substrate stiffness is discretized by the Galerkin FEM (GFEM). The vibration simulation procedure of the catenary– train–track system, created on the basis of two above- mentioned methods, has been briefly described by Bryja and Popiołek [19] and used for an initial numerical analysis. In this article, the most important assumptions of the assumed computational model will be presented, including a general idea of the catenary–train–track dynamic system decomposition into two main subsystems and the concept of one-way coupling between them [20]. Then, time histories of the pantograph base vertical vibrations obtained for two train speeds (60 m/s, 100 m/s) and two cases of track discontinuity (i.e., a sudden increase and a sudden decrease in the track substrate stiffness) will be shown, and next, their influence on the catenary– pantograph dynamic interaction will be examined. In addition, two cases of the railway vehicle suspension will be considered – a typical two-stage suspension and a primary suspension alone (between wheelsets and bogie frames). To evaluate the catenary–pantograph dynamic interaction, the dynamic uplift of the contact wire at a steady arm and the contact force exerted on the contact wire by the pantograph head will be analyzed. The main objective of this paper is an attempt to identify such a train passage scenario where railway vehicle vibrations result in worsening the quality of pantograph–catenary dynamic interaction and, thus, the conditions of a current collection. For this purpose, the comprehensive computational method for the vibration simulation of the combined catenary–train–track system is proposed. The method is specifically aimed at the analysis of the catenary vibrations induced by moving pantograph, accounting for vertical oscillation of the pantograph base. As the most probable scenario in which the pantograph base vibrations can influence the pantograph–catenary dynamic interaction, the train passage through the track discontinuity having the form of a sudden change in stiffness of the track substrate is considered in the article. 1 Introduction The proposed computational method combines two methods developed earlier by the authors and dedicated for separate vibration analysis of two systems: pantograph and catenary system and railway track and vehicle system. The first method, referring to the catenary–pantograph vibrations, has been widely described [12–15]. Its original feature is the consistent use of the theory of flexible cables in order to describe vibrations of catenary main structural elements, that is, the messenger wire and the contact wire. The validity of this method has been confirmed by a positive result of the numerical validation conducted in accordance with the European standard EN 50318 [16]. It is worth noting that in recent literature, the cable theory is very rarely used for modeling the catenary, despite the cable nature of catenary main elements. In general, different commercial software are commonly applied, where the finite element method (FEM) catenary models are created with the use of beam elements characterized by very low flexural stiffness and subjected to axial forces. A synthetic overview of various methods for modeling the catenary can be found in Pombo et al. [9] and Poetsch et al. [10]. 1 Introduction Along with the development of high-speed railways, a lot of articles on the dynamics of railway system structural elements appeared in the literature. Many of those articles are devoted to computational methods for simulating coupled vibrations of the track–train system [1–3] as well as the vibrations of catenary–pantograph system [4–6]. However, while there is an extensive literature coverage treating both systems separately, the research on the whole railway system covering the flexible track with the moving train together with the catenary is poorly developed. This results mainly from difficulties in modeling such complicated system, accounting for the dynamic interaction at the contact between railway vehicle and infrastructure. In the case of high-speed trains, this contact occurs in two groups of places: between vehicle wheels and rails and between collector heads of pantographs and the contact wire of catenary. As it is stated by Ambrósio et al. and Pombo et al. [7–9], the dynamic phenomena occurring at these places become more and more significant with the growing speed of trains. They influence the operational conditions of high- speed railways – especially the quality of current collection through the catenary–pantograph interface. There are many articles dealing with an analysis of dynamic interaction between the pantograph and catenary because it allows to evaluate the quality of current collection by the numerical prognosis of the number of loss of contact events [4–7, 10]. However, in a great majority, their authors *Corresponding author: Danuta Bryja, Department of Bridges and Railways, Faculty of Civil Engineering, Wrocław University of Science and Technology, Wybrzeże Wyspiańskiego 27, 50-370 Wrocław, Poland, E-mail: danuta.bryja@pwr.edu.pl Adam Hyliński, Department of Bridges and Railways, Faculty of Civil Engineering, Wrocław University of Science and Technology, Wybrzeże Wyspiańskiego 27, 50-370 Wrocław, Poland 112  Danuta Bryja, Adam Hyliński 112 assume that the pantograph base is immovable in a vertical direction, although in reality, it undergoes vertical vibrations as part of a running vehicle. It is difficult to find an article where an impact of vehicle vibration on the pantograph–catenary dynamic interaction is considered. The article by Pombo and Ambrosio [11] is an exception, but it considers only one scenario, in which the vehicle vibrations are induced by geometrical irregularities of rails, measured experimentally. Considering that in the case of high-speed railways the rails are of really good quality, their irregularities can induce only slight vehicle vibrations which have a negligible effect on the catenary. 2.1 General description of the catenary– train–track system The simulation method used in this article assumes the decomposition of the catenary–train–track system into two main subsystems: (A) catenary and pantographs and (B) track and train. The physical contact between them is the pantograph base fixed rigidly to the vehicle roof. Each of the highlighted main subsystems (A) and (B), in accordance with its name, consists of two internal subsystems, and these, in turn, consist of many elements which are shown in Fig. 1. An influence of track stiffness discontinuity on pantograph base vibrations ... 113 Figure 1: Scheme of catenary–train–track system with distinctive particular elements. An influence of track stiffness discontinuity on pantograph base vibrations ... 113 113 Figure 1: Scheme of catenary–train–track system with distinctive particular elements. 7], while the non-linearity caused by droppers’ behavior is accounted for. It is assumed that the contact between main subsystems (A) and (B) is modeled by the use of one-way coupling method which is often applied in the fluid– structure computational mechanics, for instance [20]. For one-way coupling calculations of the fluid–structure interaction, the fluid affects the structure motion but the motion of structure does not affect fluid properties. Similarly, it is assumed for the considered catenary– train–track system that the pantograph base motion affects the catenary–pantograph subsystem, constituting a kinematic excitation of the pantograph vibrations, but this does not occur reversely. Vibrations of the catenary– pantograph subsystem are not transferred to the train– track subsystem because they do not significantly affect a heavy railway vehicle. This approach, that is, the use of one-way coupled simulations is consistent with the physical behavior of the considered system and gives a possibility for reducing the computational effort. The most significant simplifications of the assumed computational model are as follows: (1) the model is a flat one (two-dimensional) and (2) the complex internal structure of the railway track is replaced by the Euler beam resting on the homogeneous viscoelastic foundation. The first simplification is acceptable because the vertical motion is the dominant vibration component of the considered catenary–train–track system; hence, a flat model is sufficient enough to fulfill the objective of the article which is to assess the impact of a train passage through the track stiffness discontinuity on catenary vibrations. 2.1 General description of the catenary– train–track system The second simplification which consists of omitting the internal structure of the track is also justified because, from the research purpose viewpoint, the very fact of an occurrence of track stiffness discontinuity is important – not the nature of it. In each main subsystem: (A) catenary and pantographs or (B) track and train, two internal subsystems are coupled in a two-way manner [20], excluding the moments when the loss of contact occurs. The contact loss is manifested by detaching the collector head from the contact wire (in (A)) or the wheel from the rail (in (B)). Hence, for a moment, there is no transmission of vibrations between internal subsystems in the given main subsystem. Loss of contact is the source of specific geometrical non-linearity in the main subsystems. A similar type of non-linearity occurs in the main subsystem (A) due to droppers’ behavior, because droppers do not transfer a compression. This problem is described in detail [4,14, 15]. In the presented simulation method, the geometrical non-linearities due to the loss of contact between internal subsystems are neglected, similarly as in many publications by other authors [4, 5, 2.2 The main subsystem (A): catenary and pantographs The assumed dynamic model of the main subsystem (A), shown schematically in Fig. 2, is described in detail in earlier published papers [13, 14]. Compared with the solutions presented in the literature, the model stands out by the consistent application of the theory of cable vibrations in order to formulate partial differential equations governing the motion of messenger and contact wires. An original feature of this model is also the method for considering the non-linear behavior of droppers. The model of the main subsystem (A) is referred to as the catenary which consists of one contact wire and one 114  Danuta Bryja, Adam Hyliński Figure 2: Dynamic model of the catenary- pantographs subsystem. 114  Danuta Bryja, Adam Hyliński Figure 2: Dynamic model of the catenary- pantographs subsystem. forces, can be found in Bryja and Prokopowicz [13] and Bryja and Hyliński [14]. The excitation forces gathered in the vector f(A)(t) depend on the static contact forces of pantographs, moving along the catenary at the constant speed. Dynamic increments in the moving contact forces, being a measure of dynamic interaction between pantographs and contact wire, are included in the time- dependent stiffness matrix component: [K̃(t)](A)q(A)(t). In this article, the vector f(A)(t) depends also on the dynamic displacements WJ p(t) and their velocities J p(t) at contact points between the pantograph and contact wire, where J denotes the pantograph number. These functions are computed by the solver of track–train subsystem. messenger wire. The catenary section being analyzed is composed of a given number of spans. The messenger wire, supported slidingly on rigid supports, is represented by a multispan flexible cable with a parabolic route within each span (in an unloaded state). The contact wire is treated as a straight cable (string) which is suspended to messenger wire by flexible droppers modeled by non- linear elastic constraints (springs). Messenger wire and contact wire are tensed by different constant static forces. Pantographs are modeled by two-degree-of-freedom dynamic systems. Contact between the pantograph collector head and the contact wire is represented by a linear contact spring that does not reflect a real behavior of the structure because the effects due to loss of contact are neglected in that way. However, such simplification is often applied in the literature and is allowed by the European standard EN 50318 [16] which gives guidelines for vibration simulation methods of the pantograph– catenary system. 2.2 The main subsystem (A): catenary and pantographs In the presented model, the loss of contact is identified by a negative value of the contact force. The equations of motion (1) are non-linear due to the non-linear stiffness characteristic of droppers [14]. It is assumed that the droppers are characterized by the tensile stiffness kt=k and the residual compressive stiffness kc=𝜅k which value is a given small percentage of a tensile stiffness. Note, that the assumption 𝜅=0 leads to droppers which do not carry any compression (have zero compressive stiffness). In order to take the non- linear droppers’ stiffness into account, two components related exclusively to droppers have been isolated in the general stiffness matrix: [K̂ const](A) and [K̂ dc (q(A))](A). Both components have the same structure and satisfy the assumption that kc= kt=k. The first component covers all droppers of the catenary, while the second applies only to droppers detected as being under compression at time t (therefore, it depends on q(A)). Expression [K̂ const−(1−𝜅) K̂ dc (q(A))](A) reduces the stiffness of droppers subjected to compressive forces, into the value kc=𝜅k. The component [Kconst](A) is related only to the elastic properties of messenger and contact wires. Equations of motion of the catenary–pantographs subsystem have been derived based on the Lagrange equations, using the Ritz approximation method for the catenary, as shown in Bryja and Prokopowicz [13]. They may be written in matrix notation: (1) where an explicit form of the inertia, damping, and stiffness matrices, as well as the vector of excitation An influence of track stiffness discontinuity on pantograph base vibrations ... 115 115 Figure 3: Schematic diagram of the track test section. Figure 4: Dynamic model of the train-track subsystem with marking vehicle degrees of freedom. Figur 3 S h ti di f th t k t t ti Figure 3: Schematic diagram of the track test section. Figure 3: Schematic diagram of the track test section Figure 4: Dynamic model of the train-track subsystem with marking vehicle degrees of freedom. Figure 4: Dynamic model of the train-track subsystem with marking vehicle degrees of freedom. Figure 4: Dynamic model of the train-track subsystem with marking vehicle degrees of freedom. track (see Fig. 1) or bridge approaches, culverts, turnouts, ends of tunnels, etc. A train passage through the stiffness discontinuity of the track induces significant vibrations of vehicles and, thus, rail vibrations [21]. 2.2 The main subsystem (A): catenary and pantographs To solve equation (1), the unconditionally stable variant of the Newmark numerical integration method is applied with the use of an iterative loop for calculating the stiffness matrix component: K̂ dc (q(A)), at each time step of numerical integration. The method of solving the equations of motion is described in detail in Bryja and Hyliński [14, 15]. At each time step of the simulation, the contact wire displacements at indicated points, dynamic contact force, etc, are generated based on general coordinates q(A) (ti) determined at time points ti. Discrete records of resulting time histories can be further processed. In the presented vibration simulation method, the track stiffness discontinuity is considered leaving aside its nature. The applied dynamic model of the train–track main subsystem is shown in Fig. 4. It is assumed that the railway track is the Euler–Bernoulli beam resting on the viscoelastic foundation of the Winkler type. To transform the generally known, partial differential equation of the beam vibrations, into equations of motion in a time domain, the GFEM has been adopted. This approach allows to easily account for the track stiffness discontinuity, by setting different stiffness and damping parameters of the Winkler foundation over two track segments (L1 and L2). To satisfy the GFEM requirements, both ends of the whole track section L0 have been assumed as rigidly fixed, which is shown in Fig. 3. The entire GFEM procedure adopted in this article has been explained by Bryja et al. [17, 22, 23]. 3.1 Step 1: vehicle body vibrations each based on two 2-axle bogies, as shown in Fig. 4. The trainset is equipped with a maximum of two pantographs mounted on the roof of one selected unit or two units. The pantograph base is rigidly connected with the vehicle roof, moves at constant speed together with the train, and vibrates only in a vertical direction. The assumed vehicle model of 10 degrees of freedom, presented in Fig. 4, allows to calculate vertical vibrations of the vehicle body at the pantograph attachment point. The model consists of seven rigid mass elements representing: vehicle body, two rigid bogies, and four wheelsets, connected by sets of linear springs and viscous dampers which constitute two- stage vehicle suspension. It is assumed that the wheelsets remain in full contact with rails during the vibrations. As a further stage of the research, it is planned to extend the model by introducing the Hertz contact spring between wheelsets and rails that will allow accounting for the loss of contact. The analysis is conducted for a hypothetical trainset consisting of eight repetitive units (vehicles) which include mass parameters, primary and secondary suspension parameters, and dimensions, which are gathered in Table 1. These parameters are taken from Bryja et al. [23]; they reflect the typical unit of Shinkansen high-speed train. The trainset is equipped with a single pantograph mounted on the first unit. A theoretical point of the pantograph base attachment lies on the vertical axis of the leading bogie. In order to find a scenario where the vehicle vibrations influence the catenary, a hypothetical vehicle equipped with a primary suspension alone is additionally considered. In the computational model, such a hypothetical vehicle is defined by setting a very high stiffness of the spring and zero damping parameter in the secondary vehicle suspension. The equations of motion of the described train–track subsystem derived in Bryja et al. [17, 22] on the basis of equations in Bryja et al. [23], can be written in the following general form: The calculations have been carried out for two train speeds, 60 m/s and 100 m/s, assuming that the length of the track section is equal to 300 m and the track stiffness discontinuity occurs in the middle of this section. Flexural stiffness and unit mass of the Euler beam representing two rails are 1.2831×107 Nm2 and 1.21×102 kg/m, respectively. 3.1 Step 1: vehicle body vibrations Damping of the rail material is taken into account assuming the retardation time of 2.1×10−5 s. (2) (2) In the simulation method, the solutions of equation (2), that is, general coordinates q(B)(t), their velocities q̇ (B)(t), and accelerations q̈(B)(t) are obtained by the use of the Newmark method, and on that basis, time histories of displacements WJ p(t), velocities J p(t), and accelerations ẄJ p(t) of vehicle body vibrations at the pantograph base attachment are calculated. These functions are transferred to the catenary–pantographs solver. Based on the experience from previous research described by Bryja and Popiołek [19], two types of track stiffness discontinuity are considered. The type 1 is a sudden 50-fold decrease in the stiffness of the elastic Winkler foundation: from the value of kf to kf/50, while type 2 means the reverse transition: from the value of kf/50 to kf, where kf=1.1×108 N/m2 is the assumed basic value of the Winkler foundation stiffness, specific for the track of a very good quality (see Esveld [21]). The damping coefficient characterizing the track foundation amounts to 2.8667×105 Ns/m2. 2.3 The main subsystem (B): train and track The considered section of the track is straight and horizontal, as shown in Fig. 3. Its total length L0 is divided into two segments: L1 and L2, due to an occurrence of the track discontinuity having the form of a sudden step change in the track stiffness. Such track stiffness discontinuities are usually of structural nature and exist along the track at such places as transitions from ballasted track to slab It is assumed that the train is an electric trainset composed of a given number of repetitive units (vehicles), 116  Danuta Bryja, Adam Hyliński 116 3 Numerical analysis, assumptions and results Mass of fully loaded vehicle body 3.60×104 kg Stiffness of primary suspension (single spring) 2.540×106 N/m Central rotational moment of the vehicle body mass 1.894×106 kgm2 Damping of primary suspension (single damper) 1.963×104 Ns/m Mass of the bogie 4.95×103 kg Stiffness of secondary suspension (single spring) 8.870×105 N/m Central rotational moment of the bogie mass 6.150×103 kgm2 Damping of secondary suspension (single damper) 4.335×104 Ns/m Mass of the wheelset 2.40×103 kg Arrangement of a train Table 1: Vehicle parameters (from Bryja et al. [23]). It should be recalled that both ends of the considered track section are fixed in the computational model, and the vehicle before entering the track is in a static equilibrium state (i.e., its dynamic displacements are zero). Entering on a deformable track induces vehicle body vibrations in the form of decaying oscillations which are visible in the first phase of vehicle motion, in all graphs presented in Figs. 5 and 6. This initial effect is much more intense when the vehicle enters the track resting on a weak substrate (kf/50) – Fig. 6. Local amplitudes of displacement, velocity, and acceleration are then compared with those that appear after the passage through the track stiffness discontinuity of type 1 (change from kf to kf/50) – Fig. 5. This indicates that the track substrate with the elasticity coefficient kf = 1.1×108 N/m2 does not differ much from a rigid foundation, as evidenced also by a weak initial effect that appears when the vehicle enters the track resting on a strong substrate (kf) – Fig. 5. results demonstrate that the secondary suspension effectively reduces accelerations of vehicle body vertical vibrations and, thus, improves passenger comfort as well as operational conditions of the pantograph mounted on vehicle roof. An interesting phenomenon is observed when comparing pantograph base displacements calculated for the train speed of 60 m/s and 100 m/s. At the speed of 100 m/s, local amplitudes of vibrations of the vehicle with two-stage suspension are smaller than for one-stage suspension, contrary to the case of 60 m/s. This is caused by relatively long retardation time of the reaction of two- stage suspension, due to additional dampers. 3 Numerical analysis, assumptions and results Simulation results of vehicle body vibrations at the point of pantograph base attachment are shown in Fig. 5 (for the track stiffness discontinuity of type 1) and Fig. 6 (for the track stiffness discontinuity of type 2). Time histories of displacement, velocity, and acceleration are presented for two cases of vehicle suspension (two-stage and single- stage suspension). The graphs on the left side relate to the passage speed of 60 m/s, those on the right side – 100 m/s. These graphs are prepared on the same vertical scale for both speeds, in order to facilitate a comparison of the obtained results. Similarly, time axes are equally scaled for both speeds, so that the time nature of vibrations can be compared. A vertical dotted green line denotes the moment of passing through the track stiffness discontinuity. The numerical analysis is divided into two steps, according to the assumed decomposition of the catenary–train– track dynamic system into two main subsystems and the one-way coupling method used for vibration simulation of the whole system. In the first step, time histories of the pantograph base vibrations obtained from the track–train solver are presented and analyzed. In the second step, the corresponding catenary vibrations and the dynamic contact force of the pantograph are presented in order to evaluate the impact of vehicle vibrations on the dynamic interaction between the pantograph and catenary. An influence of track stiffness discontinuity on pantograph base vibrations ... 117 An influence of track stiffness discontinuity on pantograph base vibrations ... 117 117 Table 1: Vehicle parameters (from Bryja et al. [23]). Mass of fully loaded vehicle body 3.60×104 kg Stiffness of primary suspension (single spring) 2.540×106 N/m Central rotational moment of the vehicle body mass 1.894×106 kgm2 Damping of primary suspension (single damper) 1.963×104 Ns/m Mass of the bogie 4.95×103 kg Stiffness of secondary suspension (single spring) 8.870×105 N/m Central rotational moment of the bogie mass 6.150×103 kgm2 Damping of secondary suspension (single damper) 4.335×104 Ns/m Mass of the wheelset 2.40×103 kg Arrangement of a train Table 1: Vehicle parameters (from Bryja et al. [23]). 3 Numerical analysis, assumptions and results Comparing the results obtained at the speed of 60 m/s and 100 m/s, for the same two-stage suspension of the vehicle, one can conclude that this long retardation time results in decreasing the vehicle body vibrations as well as their velocities and accelerations – all local amplitudes are a bit smaller. Therefore, it is seen that a two-stage suspension efficiency increases with the train speed. The opposite effect appears for a single-stage suspension, especially in the case of vibration accelerations. The intensity of vibrations caused by a train passage through the track stiffness discontinuity is definitely higher at the speed of 100 m/s than at 60 m/s because exclusion of secondary suspension results in a much lower delay in the dynamic response of the vehicle body. This is in line with an engineers’ intuition. All these conclusions refer to both considered types of track stiffness discontinuity. In the case of time histories obtained for the speed of 60 m/s, displacements of the vehicle without secondary suspension are lower than for a vehicle with two-stage suspension but velocities and accelerations are higher, which is consistent with practice. In particular, the maximum absolute value of vibration acceleration is more than twice higher in relation to the train with two-stage suspension. This effect is even greater at a speed of 100 m/s. It shows the intensity of the impulse load induced by a high-speed passage through the track stiffness discontinuity and also confirms the need to use a two- stage suspension in high-speed trains. 3 Numerical analysis, assumptions and results An influence of track stiffness discontinuity on pantograph base vibrations ... 119 Pantograph base vibrations Track stiffness discontinuity of type 2 (from kf/50 to kf ) Train speed: 60 m/s Train speed: 100 m/s -8.0 -6.0 -4.0 -2.0 0.0 2.0 4.0 6.0 8.0 10.0 12.0 14.0 16.0 18.0 0.0 1.0 2.0 3.0 4.0 5.0 Displacement [mm] Time [s] -8.0 -6.0 -4.0 -2.0 0.0 2.0 4.0 6.0 8.0 10.0 12.0 14.0 16.0 18.0 0.0 1.0 2.0 3.0 Displacement [mm] Time [s] -0.12 -0.09 -0.06 -0.03 0.00 0.03 0.06 0.09 0.12 0.0 1.0 2.0 3.0 4.0 5.0 Velocity [m/s] Time [s] -0.12 -0.09 -0.06 -0.03 0.00 0.03 0.06 0.09 0.12 0.0 1.0 2.0 3.0 Velocity [m/s] Time [s] -1.8 -1.5 -1.2 -0.9 -0.6 -0.3 0.0 0.3 0.6 0.9 1.2 1.5 1.8 0.0 1.0 2.0 3.0 4.0 5.0 Acceleration [m/s2] Time [s] -1.80 -1.50 -1.20 -0.90 -0.60 -0.30 0.00 0.30 0.60 0.90 1.20 1.50 1.80 0.0 1.0 2.0 3.0 Acceleration [m/s2] Time [s] Figure 6: Displacements, velocities and accelerations of the pantograph base, during a passage through the track stiffness discontinuity, depending on the suspension parameters of the vehicle: vehicle with two-stage suspension, vehicle without secondary suspension Figure 6: Displacements, velocities and accelerations of the pantograph base, during a passage through the track stiffness disc depending on the suspension parameters of the vehicle: blue color line indicates vehicle with two-stage suspension and red co indicates vehicle without secondary suspension. 3 Numerical analysis, assumptions and results The obtained 118  Danuta Bryja, Adam Hyliński 118 Pantograph base vibrations Track stiffness discontinuity of type 1 (from kf to kf/50) Track stiffness discontinuity of type 1 (from kf to kf/50) Train speed: 60 m/s Train speed: 100 m/s -8.0 -6.0 -4.0 -2.0 0.0 2.0 4.0 6.0 8.0 10.0 12.0 14.0 16.0 18.0 0.0 1.0 2.0 3.0 4.0 5.0 Displacement [mm] Time [s] -8.0 -6.0 -4.0 -2.0 0.0 2.0 4.0 6.0 8.0 10.0 12.0 14.0 16.0 18.0 0.0 1.0 2.0 3.0 Displacement [mm] Time [s] -0.12 -0.09 -0.06 -0.03 0.00 0.03 0.06 0.09 0.12 0.0 1.0 2.0 3.0 4.0 5.0 Velocity [m/s] Time [s] -0.12 -0.09 -0.06 -0.03 0.00 0.03 0.06 0.09 0.12 0.0 1.0 2.0 3.0 Velocity [m/s] Time [s] -1.8 -1.5 -1.2 -0.9 -0.6 -0.3 0.0 0.3 0.6 0.9 1.2 1.5 1.8 0.0 1.0 2.0 3.0 4.0 5.0 Acceleration [m/s2] Time [s] -1.8 -1.5 -1.2 -0.9 -0.6 -0.3 0.0 0.3 0.6 0.9 1.2 1.5 1.8 0.0 1.0 2.0 3.0 Accleration [m/s2] Time [s] Figure 5: Displacements, velocities and accelerations of the pantograph base, during a passage through the track stiffness discontinuity, depending on the vehicle suspension: vehicle with two-stage suspension, vehicle without secondary suspension Figure 5: Displacements, velocities and accelerations of the pantograph base, during a passage through the track stiffness d depending on the vehicle suspension: blue color line indicates vehicle with two-stage suspension and red color line indicate without secondary suspension. p -8.0 -6.0 -4.0 -2.0 0.0 2.0 4.0 6.0 8.0 10.0 12.0 14.0 16.0 18.0 0.0 1.0 2.0 3.0 Displacement [mm] Time [s] Displacement [mm] -0.12 -0.09 -0.06 -0.03 0.00 0.03 0.06 0.09 0.12 0.0 1.0 2.0 3.0 Velocity [m/s] Time [s] -1.8 -1.5 -1.2 -0.9 -0.6 -0.3 0.0 0.3 0.6 0.9 1.2 1.5 1.8 0.0 1.0 2.0 3.0 4.0 5.0 Acceleration [m/s2] Time [s] -1.8 -1.5 -1.2 -0.9 -0.6 -0.3 0.0 0.3 0.6 0.9 1.2 1.5 1.8 0.0 1.0 2.0 3.0 Accleration [m/s2] Time [s] Figure 5: Displacements, velocities and accelerations of the pantograph base, during a passage through the track stiffness discontinuity, depending on the vehicle suspension: vehicle with two-stage suspension, vehicle without secondary suspension Figure 5: Displacements, velocities and accelerations of the pantograph base, during a passage through the track stiffness discontinuity, depending on the vehicle suspension: blue color line indicates vehicle with two-stage suspension and red color line indicates vehicle without secondary suspension. 3 Numerical analysis, assumptions and results -8.0 -6.0 -4.0 -2.0 0.0 2.0 4.0 6.0 8.0 10.0 12.0 14.0 16.0 18.0 0.0 1.0 2.0 3.0 Displacement [mm] Time [s] -0.12 -0.09 -0.06 -0.03 0.00 0.03 0.06 0.09 0.12 0.0 1.0 2.0 3.0 4.0 5.0 Velocity [m/s] Time [s] -0.12 -0.09 -0.06 -0.03 0.00 0.03 0.06 0.09 0.12 0.0 1.0 2.0 3.0 Velocity [m/s] Time [s] -1.8 -1.5 -1.2 -0.9 -0.6 -0.3 0.0 0.3 0.6 0.9 1.2 1.5 1.8 0.0 1.0 2.0 3.0 4.0 5.0 Acceleration [m/s2] Time [s] -1.80 -1.50 -1.20 -0.90 -0.60 -0.30 0.00 0.30 0.60 0.90 1.20 1.50 1.80 0.0 1.0 2.0 3.0 Acceleration [m/s2] Time [s] Figure 6: Displacements, velocities and accelerations of the pantograph base, during a passage through the track stiffness discontinuity, depending on the suspension parameters of the vehicle: vehicle with two-stage suspension, vehicle without secondary suspension Figure 6: Displacements, velocities and accelerations of the pantograph base, during a passage through the track stiffness discontinuity, depending on the suspension parameters of the vehicle: blue color line indicates vehicle with two-stage suspension and red color line indicates vehicle without secondary suspension. 120 120  Danuta Bryja, Adam Hyliński It should be noted that the assumed track length preceding the track stiffness discontinuity (i.e., 150 m) is too short as the initial vehicle body oscillation is not completely decayed, especially in the case shown in Fig. 6. Hence, the dynamic effect caused by a train passage through the track stiffness discontinuity is amplified because of overlapping the initial vibrations induced by entering the track. However, this amplification is advisable; it may help to identify such a train passage scenario in which the vibrations of a railway vehicle considerably influence the pantograph–catenary dynamic interaction. For this purpose, all solutions presented in Figs. 5 and 6 will be examined in the second step of numerical analysis. the length of the track section considered. The material and geometric characteristics of the catenary structural elements and pantograph parameters are summarized in Table 2. To analyze the catenary vibrations, the contact wire uplift at the right steady arm of the middle catenary span is examined, due to the localization directly behind the place where the stiffness discontinuity appears in the track. In turn, the dynamic interaction between the pantograph and catenary is analyzed based on time histories of the pantograph contact force. The simulation results for different scenarios of a train passage are presented in Figs. 3 Numerical analysis, assumptions and results 7 and 8, following the pantograph position that changes in time. Fig. 7 shows the time histories generated for the track stiffness discontinuity of type 1, while Fig. 8 is related to discontinuity of type 2. As previously, the location of the track stiffness discontinuity is indicated by a dotted vertical green line. As a reference, the corresponding time histories obtained without taking the vehicle body vibrations into account are shown. All graphs illustrate the same fragment of time histories, where the pantograph moves along the third, fourth, and half of the fifth span. 3.2 Step 2: catenary vibrations The second step of numerical analysis is devoted to an evaluation of the impact of pantograph base vertical oscillations, induced by train passages through the track stiffness discontinuity, on catenary vibrations. According to the assumed research methodology, vehicle body vibrations at the pantograph base attachment point, obtained in the first step of numerical analysis, have been transferred to the solver of pantograph–catenary subsystem, constituting the kinematical excitation of the pantograph vibrations. While simulating the pantograph– catenary vibrations, the time step of numerical integration of equations of motion has been taken the same as the time step of recording the simulation results obtained from the train–track solver. The obtained results demonstrate that the vehicle body vibrations induced by crossing the track stiffness discontinuity do not considerably influence the catenary vibrations. Differences between time histories of the contact wire uplift are almost unnoticeable. In case of the dynamic contact force, the influence of vehicle body vibrations is more noticeable, but it is relevant only in one- load scenario, in which the train without the secondary suspension passes the track stiffness discontinuity of type 1 at the speed of 100 m/s (Fig. 8). Under these conditions, an additional peak of the contact force oscillation is It is assumed that the test section of the catenary consists of five identical spans with a length of 60 m each, which gives a total length of 300 m being equal to Table 2: Catenary and pantograph parameters. Table 2: Catenary and pantograph parameters. Messenger wire specific mass 1.07 kg/m Mass of the pantograph collector head 7.2 kg Messenger wire tension 16 kN Mass of the pantograph articulated frame 15.0 kg Messenger wire axial stiffness 12 MN Pantograph static force 120 N Contact wire specific mass 1.35 kg/m Stiffness of the upper spring of the pantograph 4200 N/m Contact wire tension 20 kN Stiffness of the lower spring of the pantograph 50 N/m Dropper tensile stiffness 100 kN/m Parameter of the upper damper of the pantograph 10 Ns/m Single span length 60 m Parameter of the lower damper of the pantograph 90 Ns/m Number of droppers within span 9 Stiffness of the contact spring 50 kN/m Material damping coefficient of the messenger wire 0.5% Material damping coefficient of the contact wire 0.5% An influence of track stiffness discontinuity on pantograph base vibrations ... 3.2 Step 2: catenary vibrations 122  Danuta Bryja, Adam Hyliński Track stifness discontinuity of type 2 (from kf/50 to kf) Track stifness discontinuity of type 2 (from kf/50 to kf) Train speed: 60 m/s Train speed: 100 m/s -100 -80 -60 -40 -20 0 20 120 150 180 210 240 270 Displacement [mm] Current pantograph location [m] Contact wire uplift (negative displacement) Train speed: 100 m/s Train speed: 60 m/s -50 0 50 100 150 200 250 120 150 180 210 240 270 Contact force [N] Current pantograph location [m] Pantograph contact force -50 0 50 100 150 200 250 120 150 180 210 240 270 Contact force [N] Current pantograph location [m] Pantograph contact force Figure 8: Contact wire uplift at the right steady arm of the middle catenary span and the pantograph contact force, computed under the following conditions: vehicle vibrations are not taken into account, vehicle with two-stage suspension, vehicle without secondary suspension Figure 8: Contact wire uplift at the right steady arm of the middle catenary span and the pantograph contact force, computed under th following conditions: yellow color line indicates a case when vehicle vibrations are not taken into account, blue color line indicates ve with two-stage suspension, and red color line indicates vehicle without secondary suspension. 3.2 Step 2: catenary vibrations 121 Track stifness discontinuity of type 1 (from kf to kf/50) -100 -80 -60 -40 -20 0 20 120 150 180 210 240 270 Displacement [mm] Current pantograph location [m] Contact wire uplift (negative displacement) Train speed: 100 m/s Train speed: 60 m/s Track stifness discontinuity of type 1 (from kf to kf/50) Train speed: 60 m/s Train speed: 100 m/s -100 -80 -60 -40 -20 0 20 120 150 180 210 240 270 Displacement [mm] Current pantograph location [m] Contact wire uplift (negative displacement) Train speed: 100 m/s Train speed: 60 m/s -50 0 50 100 150 200 250 120 150 180 210 240 270 Contact force [N] Current pantograph location [m] Pantograph contact force -50 0 50 100 150 200 250 120 150 180 210 240 270 Contact force [N] Current pantograph location [m] Pantograph contact force Figure 7: Contact wire uplift at the right steady arm of the middle catenary span and the pantograph contact force, computed under the following conditions: vehicle vibrations are not taken into account, vehicle with two-stage suspension, vehicle without secondary suspension Figure 7: Contact wire uplift at the right steady arm of the middle catenary span and the pantograph contact force, computed under th following conditions: yellow color line indicates a case when vehicle vibrations are not taken into account, blue color line indicates ve with two-stage suspension, and red color line indicates vehicle without secondary suspension. Current pantograph location [m] Train speed: 60 m/s -50 0 50 100 150 200 250 120 150 180 210 240 270 Contact force [N] Current pantograph location [m] Pantograph contact force Pantograph contact force Train speed: 100 m/s -50 0 50 100 150 200 250 120 150 180 210 240 270 Contact force [N] Current pantograph location [m] Pantograph contact force Pantograph contact force Pantograph contact force Figure 7: Contact wire uplift at the right steady arm of the middle catenary span and the pantograph contact force, computed under the following conditions: vehicle vibrations are not taken into account, vehicle with two stage suspension Figure 7: Contact wire uplift at the right steady arm of the middle catenary span and the pantograph contact force, computed under the following conditions: yellow color line indicates a case when vehicle vibrations are not taken into account, blue color line indicates vehicle with two-stage suspension, and red color line indicates vehicle without secondary suspension. 3.2 Step 2: catenary vibrations Track stifness discontinuity of type 2 (from kf/50 to kf) -100 -80 -60 -40 -20 0 20 120 150 180 210 240 270 Displacement [mm] Current pantograph location [m] Contact wire uplift (negative displacement) Train speed: 100 m/s Train speed: 60 m/s Contact wire uplift (negative displacement) Train speed: 60 m/s -40 -20 0 20 120 150 180 210 240 270 Displacement [ Current pantograph location [m] Train speed: 60 m/s -50 0 50 100 150 200 250 120 150 180 210 240 270 Contact force [N] Current pantograph location [m] Pantograph contact force Current pantograph location [m] p -50 0 50 100 150 200 250 120 150 180 210 240 270 Contact force [N] Current pantograph location [m] Pantograph contact force Train speed: 100 m/s p -50 0 50 100 150 200 250 120 150 180 210 240 270 Contact force [N] Current pantograph location [m] Pantograph contact force Figure 8: Contact wire uplift at the right steady arm of the middle catenary span and the pantograph contact force, computed under the following conditions: vehicle vibrations are not taken into account, vehicle with two-stage suspension Figure 8: Contact wire uplift at the right steady arm of the middle catenary span and the pantograph contact force, computed under the following conditions: yellow color line indicates a case when vehicle vibrations are not taken into account, blue color line indicates vehicle with two-stage suspension, and red color line indicates vehicle without secondary suspension. An influence of track stiffness discontinuity on pantograph base vibrations ... 123 observed in the last phase of the pantograph run (from 240 m to 270 m), which leads to a strong local decrease in the contact force and thus to loss of contact (the loss of contact occurs when the contact force is zero or negative). It means that the railway vehicle vibrations might increase the probability of loss of contact between pantograph head and contact wire, but the two-stage suspension used in high-speed trains effectively prevents such incidents. exerted on the overhead contact line by the pantograph head is observable. It was demonstrated that in the case of using the one-stage suspension in the train running at high speed, pantograph base vibrations may increase the number of contact loss events being highly undesirable due to the occurrence of electric arcing that causes surface damages of the contact wire and pantograph head strips. References [1] Zhai, W., Wang, K., Cai, C. (2009). Fundamentals of vehicle– track coupled dynamics. Vehicle System Dynamics, 47(11), 1349-1376. The numerical analysis of vibrations of the catenary– train–track system, presented in this article, leads to the conclusion that in the case of high-speed trains with typical two-stage suspension, the vehicle body vibrations induced by a sudden 50-fold change in the track stiffness do not transfer to the catenary and do not significantly affect the pantograph–catenary dynamic interaction. It was demonstrated that the efficiency of the two- stage suspension increases with the train speed; hence, such vehicle suspension effectively suppresses strong sudden shocks of the vehicle body appearing while the train passes through the track stiffness discontinuity at a high speed. It was also shown that removing the secondary vehicle suspension significantly changes a vehicle dynamic response. Vibrations of the pantograph base mounted on vehicle roof are more clearly of impulse response nature and are characterized by much higher accelerations. The intensity of this dynamic effect increases with the train speed. Even in this case, vehicle vibrations do not influence the dynamic displacements of the catenary. However, their impact on the contact force [2] Galvín, P., Romero, A., Domínguez, J. (2010). Vibrations induced by HST passage on ballast and non-ballast tracks. Soil Dynamics and Earthquake Engineering, 30, 862-873. [3] Yang, X., Gu, S., Zhou, S., Yang, J., Zhou, Y., Lian, S. (2015). Effect of track irregularity on the dynamic response of a slab track under a high-speed train based on the composite track element method. Applied Acoustics, 99, 72-84. [3] Yang, X., Gu, S., Zhou, S., Yang, J., Zhou, Y., Lian, S. (2015). Effect of track irregularity on the dynamic response of a slab track under a high-speed train based on the composite track element method. Applied Acoustics, 99, 72-84. [4] Cho, Y. H. (2008). Numerical simulation of the dynamic responses of railway overhead contact lines to a moving pantograph, considering a nonlinear dropper. Journal of Sound and Vibration, 315, 433-454. [4] Cho, Y. H. (2008). Numerical simulation of the dynamic responses of railway overhead contact lines to a moving pantograph, considering a nonlinear dropper. Journal of Sound and Vibration, 315, 433-454. [5] Cho, Y. H., Lee, K., Park Y., Kang, B., Kim, K. (2010). Influence of contact wire pre- sag on the dynamics of pantograph–railway catenary. International Journal of Mechanical Sciences, 52, 1471-1490. 4 Conclusions In this article, the research methodology of the catenary– train–track system vibration analysis is presented and used to estimate the influence of vehicle body vertical motion on the pantograph–catenary dynamic interaction. This issue is rarely referred in the literature, although any perturbations appearing at the pantograph–catenary interface are of great importance for the operation of high- speed trains because they may lead to loss of contact and thus to energy supply disruption. It follows from the literature that the geometrical irregularities of the track have a small effect on the quality of pantograph–catenary dynamic interaction [11]. Therefore, another problem was considered in this article. To find a train passage scenario that may worsen the operational conditions at the pantograph–catenary interface, the track stiffness discontinuity being the most frequent cause of significant vehicle vibration has been analyzed. 3.2 Step 2: catenary vibrations It should be emphasized that the presented numerical analysis of the overhead contact line vibrations was limited only to displacement analysis although, in the considered case, the kinematic excitation of the pantograph vibrations is manifested mainly in accelerations. Considering that a train passage through the track stiffness discontinuity results in vehicle body vibrations of fairly small amplitudes of displacements and significant acceleration amplitudes, it can be supposed that a similar effect may exist in catenary vibrations. It means that the track stiffness discontinuity influence may be more apparent in accelerations of catenary vibrations than in the displacements, just like in the case of the vehicle body. This problem will be the subject of further research, which will be possible after supplementing the vibration simulation method of the catenary–pantograph subsystem with the option for calculating the vibration accelerations. References [6] Massat, J-P., Laurent, C., Bianchi, J-P., Balmès, E. (2014). Pantograph catenary dynamic optimisation based on advanced multibody and finite element co-simulation tools. Vehicle System Dynamics, 52(Supplement), 338-354. [7] Ambrósio, J., Pombo, J., Pereira, M., Antunes, P. and Mósca, A. (2012). Recent developments in pantograph-catenary 124 124  Danuta Bryja, Adam Hyliński track with a stiffness discontinuity. In J. Kruis, Y. Tsompanakis & B.H.V. Topping (Eds.), Proc. of the Fifteenth Int. Conf. on Civil, Structural and Environmental Engineering Computing, Prague - Czech Republic, 1-4 September 2015, (pp. 1-13). Stirlingshire, Scotland: Civil-Comp Press. track with a stiffness discontinuity. In J. Kruis, Y. Tsompanakis & B.H.V. Topping (Eds.), Proc. of the Fifteenth Int. Conf. on Civil, Structural and Environmental Engineering Computing, Prague - Czech Republic, 1-4 September 2015, (pp. 1-13). Stirlingshire, Scotland: Civil-Comp Press. interaction modelling and analysis. Journal of Theoretical and Applied Mechanics, 1(1), 249-278. [8] Ambrósio, J., Pombo, J., Pereira, M., Antunes, P., Mósca, A. (2012). A computational procedure for the dynamic analysis of the catenary-pantograph interaction in high- speed trains. Journal of Theoretical and Applied Mechanics, 50(3), 681-699. [23] [23] Bryja, D., Hołubowski, R., Gisterek, I. (2014). Railroad vehicle modelling in probabilistic vibration analysis of a railway bridge with randomly fluctuating track ballast stiffness. In A. Cunha et al (Eds.), Proc. of the Ninth European Conference on Structural Dynamics EURODYN 2014, Porto - Portugal, 30 June – 2 July, (pp. 2737-2744). Porto: Clássica, Artes Gráficas. [9] Pombo, J., Antunes, P., Ambrósio, J. (2012). A study on multiple pantograph operations for high-speed catenary contact. In B. H. V. Topping (Ed.), Proceedings of the Eleventh International Conference on Computational Structures Technology (paper 139). Stirlingshire, Scotland: Civil-Comp Press. [10] Poetsch G., Evans J., Meisinger R., Kortüm W., Baldauf W., Veitl A., Wallaschek J. (1997). Pantograph/catenary dynamics and control. Vehicle System Dynamics, 28, 159-195. [11] Pombo, J., Ambrosio, J. (2013). Environmental and track perturbations on multiple pantograph interaction with catenaries in high-speed trains. Computers and Structures, 124, 88-101. [12] Bryja, D., Popiołek (Hyliński), A. (2017). Analiza drgań wieszara cięgnowego jako modelu kolejowej sieci trakcyjnej obciążonej ruchem pantografów. Journal of Civil Engineering, Environment and Architecture, 34(2), 177-190. [13] Bryja, D., Prokopowicz, D. (2016). Dyskretno-ciągły model obliczeniowy sprzężonego układu dynamicznego: pantograf - napowietrzna sieć trakcyjna. Przegląd Komunikacyjny. 71(5), 44-51. [14] Bryja, D., Hyliński, A. (2019). Droppers’ stiffness influence on dynamic interaction between the pantograph and railway catenary. Railway Reports, 63(183), 89-98. References [15] Bryja, D., Popiołek (Hyliński), A. (2018). Numeryczna symulacja drgań sieci trakcyjnych na liniach KDP, z uwzględnieniem nieliniowej pracy linek wieszakowych. In P. Kozioł, A. Szarata & W. Drozd (Eds.), Inżynieria kolejowa - szanse i wyzwania (pp. 55-76). Kraków, Poland: Wydawnictwo Politechniki Krakowskiej. [16] CENELEC. (2002). EN 50318:2002 Railway applications – Current collection systems –Validation of simulation of the dynamic interaction between pantograph and overhead contact line. Brussels: Central Secretariat of European Committee for Electrotechnical Standardization. [17] Bryja, D., Gisterek, I., Popiołek (Hyliński), A. (2015). Analiza numeryczna wpływu nierówności progowej na drgania toru kolejowego spowodowane przejazdem pociągu dużych prędkości. Inżynieria i Budownictwo, 71(10), 532-536. [18] Bryja, D. Popiołek (Hyliński), A. (2015). Analiza drgań pojazdów kolejowych w trakcie ich przejazdu przez nierówność progową toru. Przegląd Komunikacyjny, 70(9), 68-72. [19] Bryja, D., Popiołek (Hyliński), A. (2018). Drgania sieci trakcyjnej spowodowane przejazdem pociągu dużych prędkości przez nierówność progową toru kolejowego. Przegląd komunikacyjny, 73(6), 7-12. [20] Benra, F. K., Dohmen, H. J., Pei, J., Schuster, S., & Wan, B. (2011). A comparison of one-way and two-way coupling methods for numerical analysis of fluid-structure interactions. Journal of Applied Mathematics, 2011, doi:10.1155/2011/853560. [21] Esveld, C. (2014). Modern Railway Track. Zaltbommel: MRT- Productions. [22] Bryja, D., Gisterek, I., Popiołek (Hyliński), A. (2015). A computational method for acceleration analysis of a railway
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MANAGEMENT LEADERSHIP STYLE ON EMPLOYEE SATISFACTION IN COMMERCIAL BANKS, COUNTY GOVERNMENT OF KAKAMEGA; KENYA
˜The œstrategic journal of business & change management
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MANAGEMENT LEADERSHIP STYLE ON EMPLOYEE SATISFACTION IN COMMERCIAL BANKS, COUNTY GOVERNMENT OF KAKAMEGA; KENYA MANAGEMENT LEADERSHIP STYLE ON EMPLOYEE SATISFACTION IN COMMERCIAL BANKS, COUNTY GOVERNMENT OF KAKAMEGA; KENYA MANAGEMENT LEADERSHIP STYLE ON EMPLOYEE SATISFACTION IN COMMERCIAL BANKS, COUNTY GOVERNMENT OF KAKAMEGA; KENYA Shinavuli, A. M., Kadima, M. J., & Juma, D. 1 Shinavuli, A. M., 2 Kadima, M. J., & 3 Juma, D. 1 Master Student: Jomo Kenyatta University of Agriculture and Technology [JKUAT], Kenya 2 Lecturer, Jomo Kenyatta University of Agriculture and Technology [JKUAT], Kenya 3 Doctor, Lecturer, Jomo Kenyatta University of Agriculture and Technology [JKUAT], Kenya Accepted: January 4, 2022 Shinavuli, A. M., Kadima, M. J., & Juma, D. Shinavuli, A. M., Kadima, M. J., & Juma, D. Vol. 9, Iss. 1, pp 31 – 44. January 7, 2022. www.strategicjournals.com, ©Strategic Journals CITATION: Shinavuli, A. M., Kadima, M. J., & Juma, D. (2022). Management leadership style on employee satisfaction in commercial banks, county government of Kakamega; Kenya. The Strategic Journal of Business & Change Management, 9 (1), 31 – 44. INTRODUCTION An organization’s culture is the systematic way employees, leaders, and work groups behave and interact with each other. Company’s culture is collectively composed of values, beliefs, norms, language, symbols, and habits. It encompasses “a set of structures, routines, rules and norms that guide and constrain behaviour” (Northouse, 2018). Another successful and perhaps more specific- definition of organizational culture have been given by Kisi (2019); according to which “organizational culture is a set of values, symbols and rituals, shared by the members of a specific firm, which describes the way things are done in an organization in order to solve both internal management problems and those related to customers, suppliers and environment”. Madhanga (2018) has noted some common features among the definitions that have been given to organizational culture through the years. First of all, they all include the concept of sharing; indicating that organizational culture is only developed within groups (even small ones). Secondly, organizational culture is considered to be a social construction, related to each organizations and employees’ location, history, working environment and specific events. Finally, many definitions imply that organizational culture is multidimensional and multileveled and includes many cognitive and symbolic strata. Ludviga and Kalvina (2016) suggested, globally, the aspect of job satisfaction among employees is highly illuminated as a result of the intense competition arising from globalization and technological advancement. Among financial institutions, employee job satisfaction is a major determinant of the survival, demise and growth of the organization. Financial institutions where employees are satisfied with the workplace have witnessed rapid growth and expansion, despite the existing challenges. In an organizational setting, employee job satisfaction is considered crucial as it is one of the parameters that determine the success of an organization. Famakin and Abisuga (2016) stated that path-goal leadership style influences the commitment and levels of satisfaction of employees. Famakin and Abisuga further added that only 20% of managers in commercial banks in developing economies have embraced leadership styles under the umbrella of path-goal theory in the context of their operations. Alomori (2016) has noted that in modern societies and technology-based business organizations “culture is becoming increasingly important given the adoption of groupware applications, enterprise resource planning systems and other internet-based systems by organizations, which support cross collaboration and require greater user participation at all levels”. Furthermore, it can be said that organizational culture is a complex phenomenon, a product of dynamic social process. ABSTRACT Management Leadership Style is normally a function of Organization Culture that reflects basic assumptions and beliefs that are shared by members of the organization. Current statistics in the Commercial Bank sector shows that there are indeed high levels of labour turnover in the Banking sector. The objective of the study was to determine the influence of management Leadership Style on employee satisfaction of the Commercial Banks in the County Government of Kakamega; Kenya. The study employed Descriptive research design. The target population were the employees of Commercial Banks in the County Government of Kakamega; Kenya. Sample applied, was determined by use of Krejcie and Morgan Formula. The questionnaire was the instrument for primary data collection. Quantitative data was analyzed using descriptive statistics (means and other central tendencies) and presented through percentages, means, standard deviations and frequencies. Inferential statistics was applied to carry out correlations analysis, bivariate and multiple linear regression analyses to test for degree of association (correlation) between and among variables in relation to the influence of management leadership style to Employee Satisfaction in the County Government of Kakamega; Kenya. The results of the study indicated Management Leadership Style has significant influence on Employee Satisfaction of Commercial Banks in the County Government of Kakamega; Kenya. Key Words: Management Leadership Style, Organization Culture, Employee Satisfaction CITATION: Shinavuli, A. M., Kadima, M. J., & Juma, D. (2022). Management leadership style on employee satisfaction in commercial banks, county government of Kakamega; Kenya. The Strategic Journal of Business & Change Management, 9 (1), 31 – 44. The Strategic Journal of Business & Change Management. ISSN 2312-9492 (Online) 2414-8970 (Print). www.strategicjourna employees, through creation of motivating working atmosphere, through inculcating a sense of cooperation, creative division of labour, offering guidance where needed and through creation of effective levels of communication. According to Famakin and Abisuga (2016) on conducting a study of the effect of path-goal leadership styles on levels of employee commitment in construction entities in China, the study established a strong association between supportive and achievement-oriented leadership style, and effective and continuing commitment. Further, supportive leadership style, had significant influence on effective commitment of employees. There was no significant relationship between the leadership styles under the path-goal theory and normative commitment of employees. Therefore, organization leadership should instill a sense of supportive commitment as an attempt at inducing job satisfaction. INTRODUCTION Salonova and Sanui (2016) embraced Management leadership style being a way of life operating throughout the enterprise and permits an executive to rely on the initiative of the personnel of an In the study by Graen (2013) on management leadership styles, leadership impacts on the ability of an organization to achieve its performance targets through improvement of the morale of the Page: - 32 - The Strategic Journal of Business & Change Management. ISSN 2312-9492 (Online) 2414-8970 (Print). www.strategicjournals.com egic Journal of Business & Change Management. ISSN 2312-9492 (Online) 2414-8970 (Print). www.strategicjournals.com emphasized that organizational sub-cultures may exist independently of organizational culture, and that a small work group may have its own distinct set of values, beliefs and attributes. It has been further suggested that if Management Leadership is not articulated strongly enough, the subculture may take precedence over the organizational culture for individual employees and thus affecting the employee’s performance and more so satisfaction. Most scholars among them; Oketch et al., (2018) established that Management Leadership Style has a positive correlation and meaningful impact on the employee satisfaction and ultimately improved performance of the organization. Other scholars including Zafar and Vikramjeet (2017) studied the relationship between Management Leadership Style and Employee Satisfaction and established positive significant correlation, other scholars among them; Behzadi et al., (2012) found no relationship between Management Leadership Style and Employee Satisfaction, where as Khalid et al., (2012) found moderate relationship between the similar variables; hence, dispersion of results from scholars gave a rise of a researchable gap that this study undertook. entity; hence, effective management style is the extent to which a leader continually and progressively leads and directs followers to a predetermined destination agreed upon by the whole group. It is the manner of approach to issues of the managers towards achieving the goals of their organization by transforming various resources available to any organization into output through the functions of management. Kagwiria (2016) considered management style as the distinctive way in which an organization makes decisions and discharges various functions of goal setting, formulation, implementation of strategy, corporate image building, dealing with key stakeholders and other basic management activities. Management consists of the planning, prioritizing, and organizing work efforts to accomplish objectives within a business organization. A management leadership style is the particular way managers go about accomplishing these objectives. INTRODUCTION It encompasses the way they make decisions, how they plan and organize work, and how they exercise authority (Vahedi & Asadi, 2014). Management leadership styles vary by company, level of management, and even from person to person. A good leader is one that can adjust their management style to suit different environments and employees. An individual’s management style is shaped by many different factors including internal and external business environments, and how one views the role of work in the lives of employees (Yusuf, Muhammed & Kazeem, 2014). Objectives of the Study The study determine the influence of Management Leadership Style on Employee’s Satisfaction in the Commercial Banks in the County Government of Kakamega; Kenya. The study was guided by the following Research Hypothesis;  H01: There is no significant influence between Management Leadership Style on Employee Satisfaction in the Commercial Banks in the Statement of the Problem In the study by Mwenda (2017) on culture of an organization, the culture of an organization has an important impact on its performance. Management Leadership style being a function of the Organization Culture has stood a chance for study by many scholars; hence, the difference between organizational success and failure significantly depends on Management Leadership Style that impacts on organizational operation. Kagwiria (2016) embraces several researches have County Government of Kakamega; Kenya Organization Culture Theory The organization culture theory was proposed by Schein in 1988. The theory states that culture exists in three levels which are artifacts, values and egic Journal of Business & Change Management. ISSN 2312-9492 (Online) 2414-8970 (Print). www.strategicjournals.com underlying assumptions. Artifacts deal with organizational attributes which are visible, tangible and can also be heard. Values are espoused goals, ideals, norms, standards and also moral principles. Underlying assumptions deal with phenomena that remain unexplained when insiders are asked regarding the values of the organizational culture. The principles of this theory underscore the importance of acknowledging that organizational life is complex and as such, it is crucial to take into consideration not only the members of the organization, but also their behaviors, activities and stories (Mumby, 1988). rules and schemes, are established for purposes of maintaining social behavior (Bright, 2014). These structures constitute the three pillars of an institutions namely cultural cognitive, normative and regulatory. Social obligation is considered the basis for compliance in the normative pillar. The normative pillar encompasses values and norms. Shared understanding, common beliefs and symbols are emphasized by the cultural cognitive pillar; whereas the emphasis of the regulatory pillar is on the use of sanctions, rules, and laws to ensure compliance. As such, different aspects of the institutional theory describe how these structures are established, diffused, adapted and adopted over time and space and how they disuse and decline. In view of this theory, legitimacy can be achieved by conforming to key expectations of the stakeholders (Vailatti, Rosa & Vicente, 2017). More important, the relevance of the organizational culture theory in the context of higher education has been put into perspective (Kramer & Berman, 2001). The theory has been employed to study the stories of undergraduate students and their perceptions of fitting in at a college or university. Similarly, the organizational culture theory can be adopted to explain the views of stakeholders in respect to corporate culture exhibited in tertiary institutions. It suggests that social values influence structures of an organization and that these social values are often widely accepted but typically taken-for granted. It posits that while seeking to conform to pressures from the external environment and to shared norms, firms often attempt to demonstrate to stakeholder groups that they are legitimate (Ashworth, 2010). Organization Culture Theory According to Ashworth (2010) by conforming to shared norms, organizations enhance their perceived legitimacy, become protected from scrutiny and external pressure and enhance their chances of survival. The theory has faced a number of criticisms. It has been noted that the theory relies a lot on the shared meaning among organizational members (Eisenberg & Goodall, 1993). These scholars argue that most cultures depict significant more alignment in practice than they do in the attitudes, opinions or beliefs of individual members. Another criticism of the organizational culture theory is pointed out to its view of organizational life as being too unique. This is against the general expectations and reality that organizational cultures vary due to the fact that interactions within those cultures differ. Therefore, generalizing life within organizations is highly impossible (West & Turner, 2013). Following Higgins (1988), institutional norms deal with appropriate domains of operation, principles of organizing, and criteria of evaluation. Values and beliefs external to the organization play a crucial role in determining organizational norms. Conformity to societal and cultural expectations or, more generally speaking, to external institutional norms, are the most relevant factors for this type of organizations. With this type of organizations conformity to the institutional norms of the external environment enhances their survival capabilities, opens access to resources and increases their stability. Following Greenwood and Higgins (1988), institutional norms deal with Review of study variables the organization. Financial institutions where employees are satisfied with the workplace have witnessed rapid growth and expansion, despite the existing challenges. In an organizational setting, employee job satisfaction is considered crucial as it is one of the parameters that determine the success of an organization. Famakin and Abisuga (2016) stated that path-goal leadership style influences the commitment and levels of satisfaction of employees. Famakin and Abisuga further added that only 20% of managers in commercial banks in developing economies have embraced leadership styles under the umbrella of path-goal theory in the context of their operations. However, little empirical evidence has been undertaken to assess the Kenyan context. Many leadership scholars among them; (Ludviga & Kalvina, 2016; Famakin & Abisuga, 2016; Salanova & Sanni, 2016; Hearthfield, 2012) have conducted studies on the relationships between path-goal theory and employee job satisfaction. However, Kagwiria (2016) found that a few studies have focused on use of path-goal leadership style in financial organizations. In the study by Abu-Shamaa, AlRabayah and Khasawneh (2016) on job satisfaction, most research has focused on relating job satisfaction and performance in public and private organizations. According to Redmond and Serrano (2015) it was confirmed that studies on leadership styles have concentrated on participatory leadership style, work attitudes and employee motivation with few focusing on path-goal leadership style and job satisfaction. Institutional Theory Institutional Theory focuses on the resilient and deeper aspects of social structure. It explains the influence of the environment on organizations. It describes processes through which structures and authoritative guidelines, including routines, norms, Page: - 34 - The Strategic Journal of Business & Change Management. ISSN 2312-9492 (Online) 2414-8970 (Print). www.strategicjournals.com egic Journal of Business & Change Management. ISSN 2312-9492 (Online) 2414-8970 (Print). www.strategicjournals.com Page: - 34 - beliefs external to the organization play a significant role in determining organizational norms. appropriate domains of operation, principles of organizing, and criteria of evaluation. Values and Independent Variable Dependent Variable Management Leadership Style  Flexibility and adaptation  Activities planning  Objectives and strategy Employee Satisfaction  Satisfaction with administrative support  Satisfaction with working conditions Independent Variable Figure 1: Conceptual Framework Management Leadership Style  Flexibility and adaptation  Activities planning  Objectives and strategy Dependent Variable Employee Satisfaction  Satisfaction with administrative support  Satisfaction with working conditions Independent Variable Figure 1: Conceptual Framework Management Leadership Style  Flexibility and adaptation  Activities planning  Objectives and strategy Employee Satisfaction  Satisfaction with administrative support  Satisfaction with working conditions Dependent Variable Management Leadership Style and Employee Satisfaction Zia, Khan and Nouman (2014) investigated the impact of participative management style on job satisfaction of the employees. Based on the review of existing literature, a model linking manager’s participative management style, participation in strategic planning process, supervisor communication and job satisfaction was tested with the help of data collected from 86 (n=86) faculty members of universities in Islamabad. Regression results indicate that effective supervisory communication is a major cause of job satisfaction in the context of participative management. The study implies that in order to improve faculty satisfaction, the administrators in higher education sector should replace traditional authoritative command structures with participative management style. Salonova and Sanui (2016) embraced Management leadership style being a way of life operating throughout the enterprise and permits an executive to rely on the initiative of the personnel of an entity; hence, effective management style is the extent to which a leader continually and progressively leads and directs followers to a predetermined destination agreed upon by the whole group. It is the manner of approach to issues of the managers towards achieving the goals of their organization by transforming various resources available to any organization into output through the functions of management. Kagwiria (2016) considered management style as the distinctive way in which an organization makes decisions and discharges various functions of goal setting, formulation, implementation of strategy, corporate image building, dealing with key stakeholders and other basic management activities. Shahmohammadi (2015) examined the relationship between management style with human relations and job satisfaction among Guidance Schools’ principals in District 3 of Karaj. This study is a descriptive - correlation study and under study population is all Guidance Schools’ principals in District 3 of Karaj that are 96 persons. Due to the limited size of the population, all of the samples were examined. Data were collected using 3 types of questionnaires including Management Luthanz, Macgregor (X, Y) and JDI job satisfaction. The results indicated that there is no correlation between relationship-oriented management style with human relationships and relationship-oriented management style with job satisfaction of the managers and in addition, there is a correlation Management consists of the planning, prioritizing, and organizing work efforts to accomplish objectives within a business organization. A management leadership style is the particular way managers go about accomplishing these objectives. Management Leadership Style on Employee Satisfaction In the study by Graen (2013) on management leadership styles, leadership impacts on the ability of an organization to achieve its performance targets through improvement of the morale of the employees, through creation of motivating working atmosphere, through inculcating a sense of cooperation, creative division of labour, offering guidance where needed and through creation of effective levels of communication. According to Famakin and Abisuga (2016) on conducting a study of the effect of path-goal leadership styles on levels of employee commitment in construction entities in China, the study established a strong association between supportive and achievement-oriented leadership style, and effective and continuing commitment. Further, supportive leadership style, had significant influence on effective commitment of employees. There was no significant relationship between the leadership styles under the path-goal theory and normative commitment of employees. Therefore, organization leadership should instill a sense of supportive commitment as an attempt at inducing job satisfaction. Ludviga and Kalvina (2016) suggested, globally, the aspect of job satisfaction among employees is highly illuminated as a result of the intense competition arising from globalization and technological advancement. Among financial institutions, employee job satisfaction is a major determinant of the survival, demise and growth of Page: - 35 - The Strategic Journal of Business & Change Management. ISSN 2312-9492 (Online) 2414-8970 (Print). www.strategicjournals.com egic Journal of Business & Change Management. ISSN 2312-9492 (Online) 2414-8970 (Print). www.strategicjournals.com Alanazi (2013) study on the influence of path-goal leadership theory concurred that a shortage of empirical literature exists especially on the association of path-goal leadership styles and job satisfaction of employees. The purpose of the study was to establish the influence of supportive leadership style on employee job satisfaction in commercial banks in Kenya. Management style can be understood as a way to manage an organization. According to Ludviga and Kalvina (2016), management style is the adhesive that binds diverse operations and functions together; hence, it is the philosophy or set of principles by which the manager capitalizes on the abilities of the workforce. management, and even from person to person. A good leader is one that can adjust their management style to suit different environments and employees. An individual’s management style is shaped by many different factors including internal and external business environments, and how one views the role of work in the lives of employees (Yusuf, Muhammed & Kazeem, 2014). FINDINGS AND DISCUSSIONS The study involved 103 questionnaires being dispatched for data collection, 77 questionnaires were returned completely filled, representing a response rate of 75% which was good for generalizability of the research findings to a wider population. Primary data was collected by means of self- administered questionnaires. The questionnaires had structured questions. These questionnaires were structured and designed in multiple choice formats. Section one introduced the researcher, topic of research and its purpose to the respondent. Data collected from the field was coded, cleaned, tabulated and analyzed using both descriptive and inferential statistics with the aid of specialized Statistical Package for Social Sciences Management Leadership Style and Employee Satisfaction It encompasses the way they make decisions, how they plan and organize work, and how they exercise authority (Vahedi & Asadi, 2014). Management leadership styles vary by company, level of egic Journal of Business & Change Management. ISSN 2312-9492 (Online) 2414-8970 (Print). www.strategicjournals.com (SPSS).version 24 software. Descriptive statistics such as frequencies and percentages as well as measures of central tendency (means) and dispersion (standard deviation) was used. Data was also organized into graphs and tables for easy reference. between task-oriented management style with human relationships and task-oriented management style with job satisfaction of managers and also there is a correlation between relationship-oriented management style with human relationships and job satisfaction of manager. Furthermore, there is a correlation between task-oriented management style with human relationships and job satisfaction. Further, inferential statistics such as regression and correlation analyses was used to determine both the nature and the strength of the relationship between the dependent and independent variables. Correlation analysis is usually used together with regression analysis to measure how well the regression line explains the variation of the dependent variable. The linear and multiple regression plus correlation analyses were based on the association between two (or more) variables. SPSS version 24 is the analysis computer software that was used to compute statistical data. Study conceptualized Regression Model; METHODOLOGY Descriptive research survey design was used to determine an association between the conceptualized independent and dependent variables as shown in the study’s conceptual model. This study targeted 274 employees of Commercial Banks in the County Government of Kakamega; Kenya. A sampling frame is a list of all the items in the population (Cooper & Schinder, (2007). That is, it is a complete list of everyone or everything you want to study or a list of things that you draw a sample from. In this study it consisted of employees of Commercial Banks of the County Government of Kakamega; Kenya. The study sample size was determined using Taro Yamane’s proportional sampling technique formula. The importance of this expression is that it gives a researcher the required sampling interval for a given population and a known sample. Therefore a sample size has been calculated as per Taro Yamane’s proportional sampling technique formula. The study employed Krejcie and Morgan Formula technique to determine a sample of 103 employees of Commercial Banks in the County Government of Kakamega ; Kenya. y = β0+β1X1 + ε y = Employee Satisfaction of Commercial Banks in the County Government of Kakamega; Kenya X1= Management Leadership Style {β1} = Beta coefficients ε = the error term Descriptive statistics: Management Leadership Style on Employee Satisfaction These were summarized responses on whether Management Leadership Style has influence on Employee Satisfaction of Commercial Banks in the County Government of Kakamega; Kenya. Most respondents agreed (44.2%) that the Leadership Style in existence provides all views of Page: - 37 - egic Journal of Business & Change Management. ISSN 2312-9492 (Online) 2414-8970 (Print). www.strategicjournals.com the organization to the members, while 15.5% disagreed to the statement, implying that there are banks whose members are not provided with organization views on leadership. More closely, only 35.1% agreed while 22.1% of respondents were uncertain that Leadership Style encourages participative management leadership; hence, revealing existence of inefficiency of some of Leadership Style operations experienced by bank employees. banks and employees recognize the value of leadership styles in organization. Management styles vary by company, level of management, and even from person to person. A good manager is one that can adjust their management style to suit different environments and employees. An individual’s management style is shaped by many different factors including internal and external business environments, and how one views the role of work in the lives of employees (Yusuf, Muhammed` & Kazeem, 2014). Further, while 48.1% of respondents agreed that most banks’ employees are allowed to make decisions on their own, 13.0% disagreed revealing existence of misunderstanding of bank employees to make their own decisions, more so 50.6% of respondents agreed that the banks provide platforms for seminars of employees on leadership style, while 42.9% of respondents also agreed that they are happy with the management style. CONCLUSIONS AND RECOMMENDATIONS This tested the influence of Management Leadership on Employee Satisfaction of Commercial Banks in the County Government of Kakamega; Kenya. The study found that Management Leadership Style had significant influence on Employee Satisfaction of the county government of Kakamega; Kenya. The study results are consisted with earlier researchers that found that Management Leadership Style benefits employees at work place if the leadership style is held in participative manner. The study concluded that Commercial Banks effectively recognize utilization of Management Leadership Style in organizations; hence improving the leadership Style leads to improvement on the Satisfaction of Employees. (i) y = 0.682 + 0.919X1 Where; y = Employee Satisfaction, X1 = Management Leadership Style (i) y = 0.682 + 0.919X1 Where; y = Employee Satisfaction, X1 = Management Leadership Style Study hypothesis (H01) First, study hypothesis one (H01) stated that Management Leadership Style does not significantly influence Employee Satisfaction of Commercial Banks in the County Government of Kakamega ; Kenya. However, regression results indicate that Management Leadership Style significantly influence Employee Satisfaction of Commercial Banks in the County Government of Kakamega (β = 0.919 (0.073) at p<0.01). Hypothesis one is therefore rejected. The results indicate that that a single improvement in effective Management Leadership Style will lead to 0.919 unit increase in the Employee Satisfaction of The study recommended that Commercial Banks should roll out replant Management Leadership Style; hence such would improve the employee satisfaction as well the performance of the banking industry. Areas for further research Similar study can be done on other organizations especially the manufacturing companies using different methods of analysis for comparison of the findings. Linear influence of Management Leadership Style on Employee Satisfaction This tested the direct influence of Crowd Funding on Financial Performance of listed commercial banks in Kenya. The results are shown table 1. Lastly, most respondents agreed (49.3%) and strongly agreed (16.9%) that generally, the banks’ trainings take leadership style as key; implying that Table 1: Direct influence of Management Leadership Style Model Summary Model R R Square Adjusted R Square Std. Error of the Estimate Change Statistics R Square Change F Change df1 df2 Sig. F Change 1 .814a .670 .665 .69397 .670 159.562 1 75 .000 ANOVAb Model Sum of Squares Df Mean Square F Sig. 1 Regression 76.844 1 76.844 159.562 .000a Residual 36.120 75 .482 Total 112.964 76 Coefficientsa Model Unstandardized Coefficients Standardized Coefficients T Sig. B Std. Error Beta 1 (Constant) .682 .232 2.945 .004 Leadership style .919 .073 .825 12.632 .000 a. Dependent Variable: Employee Satisfaction Table 1: Direct influence of Management Leadership Style From table 1, the model summary showed that R2 = 0.670; implying that 67.0% variations in the Page: - 38 - The Strategic Journal of Business & Change Management. ISSN 2312-9492 (Online) 2414-8970 (Print). www.strategicjournals.com Commercial Banks in the County Government of Kakamega ; Kenya. explained by Management Leadership Style while other factors not in the study model accounts for 33.0% of variation in Employee Satisfaction of Commercial Banks in the County Government of Kakamega; Kenya. Further, coefficient analysis shows that Management Leadership Style has positive significant influence on Employee Satisfaction of Commercial Banks in the County Government of Kakamega; Kenya (β = 0.919 (0.073); at p<.01). This implies that a single improvement in effective Management Leadership Style will lead to 0.919 unit increase in the Employee Satisfaction of Commercial Banks in the County Government of Kakamega; Kenya. Therefore, the linear regression equation is; Abu-Shamaa, R., Al-Rabayah, W., & Khasawneh, R.T. (2016). The Effect of Job Satisfaction and Work Engagement on Organizational Commitment, The IUP Journal of Organizational Behavior, 4 (1), 1-5. Alanazi, E. (2013). Overview of path-goal leadership theory, Sains Humanika, 64 (2), 1-2 REFERENCES Ahmed, R. R., Hanif, M., Abid Alvi, H., Vveinhardt, J., & Adil, M. S. (2014). Impact of organizational culture on organizational commitment and job satisfaction. European journal of business and management, 6(27), 30-38 Abid Alvi, H., Hanif, M., Adil, M. S., Ahmed, R. R., & Vveinhardt, J. (2014). Impact of organizational culture on organizational commitment and job satisfaction. European Journal of Business and Management, 6(27) Abid Alvi, H., Hanif, M., Adil, M. S., Ahmed, R. R., & Vveinhardt, J. (2014). Impact of organizational culture on organizational commitment and job satisfaction. European Journal of Business and Management, 6(27) Abu-Shamaa, R., Al-Rabayah, W., & Khasawneh, R.T. (2016). The Effect of Job Satisfaction and Work Engagement on Organizational Commitment, The IUP Journal of Organizational Behavior, 4 (1), 1-5. Alanazi, E. (2013). Overview of path-goal leadership theory, Sains Humanika, 64 (2), 1-2 Abu-Shamaa, R., Al-Rabayah, W., & Khasawneh, R.T. (2016). The Effect of Job Satisfaction and Work Engagement on Organizational Commitment, The IUP Journal of Organizational Behavior, 4 (1), 1-5. Alanazi, E. (2013). Overview of path-goal leadership theory, Sains Humanika, 64 (2), 1-2 he Strategic Journal of Business & Change Management. ISSN 2312-9492 (Online) 2414-8970 (Print). www.strategicjournals.c Alikor, L. O., & Ajor, L. (2020). Non- discriminatory practices and employees’ work attitudes in the oil and gas companies in Nigeria. The Strategic Journal of Business & Change Management, 7(1), 118 – 130. Ali, A. Y. S., & Dahie, A. M. (2018). Leadership style and teacher job satisfaction: Empirical survey from secondary schools in Somalia. Leadership, 5(8), 33-29 Applbaum, R. L., & Anatol, K. W. (2011). The relationships among job satisfaction, organizational norms, and communicational climate among employees in an academic organization. Journal of Applied Communication Research, 7(2), 83-90 Ariyo Miss, E. O. (2020). Influence of Organizational Culture on Job Satisfaction of Library Personnel in Selected Academic Libraries in Three States in South-West, Nigeria Atmojo, M. (2015). The influence of transformational leadership on job satisfaction, organizational commitment, and employee performance. International research journal of business studies, 5(2). Behzadi F. (2012), Relationship between job satisfaction and organizational culture in staffs and experts of physical education offices of Mazandaran Province, European Journal of Experimental Biology, 2012, 2 (4), 1029-1033 Barnett Kirn, Hi, Tavitiyaman P., & Kim, W.G. (2016). The effect of management to service on employee service behaviors: The mediation effect of job satisfaction. Journal of Hospitality & Tourism Research, 369-390. Berson, Y., & Linton, J. D. (2015). REFERENCES An examination of the relationships between leadership style, quality, and employee satisfaction in R&D versus administrative environments. R&D Management, 35(1), 51-60. Bushra, F., Usman, A., & Naveed, A. (2011). Effect of transformational leadership on employees’ job satisfaction and organizational commitment in banking sector of Lahore (Pakistan). International journal of Business and Social science, 2(18), 261-267 Castro, M. L., & Martins, N. (2010). The relationship between organizational climate and employee satisfaction in a South African information and technology organization. SA Journal of industrial psychology, 36(1), 1-9. Chen, L.Y. (2014). Examining the effect of organization culture and leadership behaviors on organizational commitment, job satisfaction, and job performance at small and middle- sized firms of Taiwan. The Journal of American Academy of Business, Crispen, C. (2017). Organizational culture and job satisfaction among academic professionals at a South African university of technology” Problems and Perspectives in management, 15 (2) Danish, R. Q., Draz, U., & Ali, H. Y. (2015). Impact of organizational climate on job satisfaction and organizational commitment in education sector of Pakistan. American journal of mobile systems, applications and services, 1(2), 102-109 Emery, C.R., & Barker, K.J. (2017). The effect of transactional and transformational leadership on the organizational commitment and job satisfaction on customer contact personnel. Journal of Organizational Culture, Communication and Conflict, 11, 77-90. Engineering, Construction and Architectural Management, 15(2), 164-184. The Strategic Journal of Business & Change Management. ISSN 2312-9492 (Online) 2414-8970 (Print). www.strategicjournals.com he Strategic Journal of Business & Change Management. ISSN 2312-9492 (Online) 2414-8970 (Print). www.strategicjournals.c Famakin, I., & Abisuga A. (2016). Effect of path-goal leadership styles on the commitment of employees on construction projects. International Journal of Construction Management, 16 (2)10-11. Ghorbanian, A., Bahadori, M., & Nejati, M. (2012). The relationship between managers' leadership and emergency medical technicians' job satisfaction. The Australasian medical journal, 5(1), 1. Gitoho, S. W., Kamau, J. N., & Muchara, M. (2016). Influence of Transactional Leadership on Employee Job Satisfaction: Case Study of Firms Listed on the Nairobi Securities Exchange. Gitoho, S. W., Kamau, J. N., & Muchara, M. (2016). Influence of Transformational Leadership Style on Employee Job Satisfaction: Case Study of Firms Listed at the NSE. International Journal Gürbüz, A. (2017). An assessment on the effect of education level on the job satisfaction from the toursim sector point of view of Novel Research in Marketing Management and Economics 2(3), 177-190 Ibrahim, R., Boerhannoeddin, A., & Kayode, B. K. (2017). REFERENCES Organizational culture and development: Testing the structural path of factors affecting employees’ work performance in an organization. Asia Pacific Management Review, 22(2), 104–111 Jyoti, J. (2013). Impact of organizational climate on job satisfaction, job commitment and intention to leave: An empirical model. Journal of business theory and practice, 1(1), 66-82. Karanja, L. W. (2016). Effects of organizational climate on technological innovation and job satisfaction among employees in Kenya's public transport sector: a case of Pewin cabs limited (Doctoral dissertation, University of Nairobi). Kagwiria, L., (2016). Influence of Leadership on Employee Productivity at KCB Bank Kenya Ltd. Nairobi Branches, University of Nairobi. Kim, S. (2014). Participative management and job satisfaction: lessons for management leadership. Public Administration Review, 62(2), 231-341. Khalid, S., Irshad, M. Z., & Mahmood, B. (2012). Job satisfaction among academic staff: a comparative analysis between public and private sector universities of Punjab, Pakistan. International Journal of Business and Management, 7(1), 126-136 Li, Y. P., & Mahadevan, A. (2017). A Study on The Impact of Organizational Climate on Employee Performance in A Malaysian Consultancy. International Journal of Accounting & Business Management, 5(1), 1-13. Lok, P., & Crawford, J. (2004). The effect of organizational culture and leadership style on job satisfaction and organizational commitment. Journal of management development Long, C. S., &Thean, L. Y. (2011) Relationship between leadership, Job satisfaction and employees' Turnover intention: A literature review. Research journal of business management, 5 (3), 91-100 Lucas, M. D. (2011). Management style and staff nurse job satisfaction. Journal of Professional Nursing, 7(2), 119-125. Ludviga, I., & Kalvina, A. (2016). Exploring the Relationships between Job Satisfaction, Work Engagement and Loyalty of Academic Staff. International Journal of Economics and Management Engineering, 10 (1), 99-101. Ludviga, I., & Kalvina, A. (2016). Exploring the Relationships between Job Satisfaction, Work Engagement and Loyalty of Academic Staff. International Journal of Economics and Management Engineering, 10 (1), 99-101. trategic Journal of Business & Change Management. ISSN 2312-9492 (Online) 2414-8970 (Print). www.strategicjournals.com Mwendwa, J. M. (2017). Determinants of Employee Intention to Quit Their Jobs at Commercial Banks in Kenya: A Case Study of KCB Bank Kenya Limited (Doctoral dissertation, United States International University-Africa). Munga, J. W., Juma, D., & Njeru, A. (2019). Relationship between organizational culture and performance of pharmaceutical manufacturing firms in Kenya, The Strategic Journal of Business & Change Management, 6 (1), 637 – 646 Malhorta& Mukherjee. (2014). REFERENCES The relative influence of organizational commitment and job satisfaction on service quality of customer contact employees in banking call centers. Journal of Services Marketing, 162-174. Namiq, F. A. (2018). Most effective management style for modern workplace. International Journal of Engineering and Management Sciences, 3(3), 402-411. Natasha, D., &Subroto, B. (2013). Effects of management commitment on service quality to increase customer satisfaction of domestic airlines in Indonesia. Singapore Management Review, 85-102. Ojo, M. I. (2020). Talent acquisition outsourcing and Employee Job Satisfaction of the oil and gas sector in Rivers State, Nigeria. The Strategic Journal of Business & Change Management, 7(1), 104 – 117. Oketch, D.O., Kuria, D.K & Kariuki, E. (2018). Effects of organizational culture and organizational learning on NGOs: A perspective from Nairobi, Kenya, The Strategic Journal of Business and Change Management, 5 (3) Omega, P. M. (2012). The Perceived relationship between organizational culture and employees’ job satisfaction at Kenya Commercial Bank (Doctoral dissertation). Okoli, I. E. (2018). Organizational Climate and Job Satisfaction among Academic Staff: Experience from Selected Private Universities in Southeast Nigeria. International Journal of Research in Business Studies and Management, 5(12), 36-48. Petrovid, M. D., Đeri, L., Markovid, J. J., Galamboš, A., Galamboš, T., & Jovičid, A. (2013). Educational Level Differences in Job Satisfaction and Service Orientation: Case of Hotels in Novi Sad (Serbia). International Journal of Business Tourism and Applied Sciences, 1(2), 21-29. Phipps, S. T., Prieto, L. C., &Ndinguri, E. N. (2013).Understanding the impact of employee involvement on organizational productivity: The moderating role of organizational commitment. Journal of Organizational Culture, Communications and Conflict, 17(2), 107. Qazi, S., Miralam, M. S., & Bhalla, P. (2017). Organizational culture and job satisfaction: a study of organized retail sector. Journal of Business and Retail Management Research, 12(1). Rad, A. M. M., & Yarmohammadian, M. H. (2016). A study of relationship between managers' leadership style and employees' job satisfaction. Leadership in Health Services Rayton, B.A. (2016). Examining the interconnection of job satisfaction and organizational commitment: an application of the bivariate probit model. International Journal of Human Resource Management, 17, 139-154. Reidhead, C. (2020). Impact of Organizational Culture on Employee Satisfaction: A Case of Hilton Hotel, United Kingdom. Journal of Economics and Business, 3(1). The Strategic Journal of Business & Change Management. ISSN 2312-9492 (Online) 2414-8970 (Print). www.strategicjourn Saeed, R., Azizollah, A., Zahra, A., Abdolghayoum, N., Zaman, A., & Peyman, Y. (2011). REFERENCES Effect of Female Principal's Management Styles on Teacher's Job Satisfaction in Isfahan-Iran, Girls High Schools. International Education Studies, 4(3), 124-132. Sow, M. (2017). The relationship between leadership style, organizational culture, and job satisfaction in the US healthcare industry, Management and Economics Research Journal, 3(2017), 1332 Sharma, P. (2017). Organizational culture as a predictor of job satisfaction: The role of age and gender. Management-Journal of Contemporary Management Issues, 22(1), 35–48 Salanova. A. & Sanni K. (2016). Employee Satisfaction and Work Motivation, Research in Prisma Mikkeli, Mikkeli University of Applied Sciences Soomro, B. A., & Shah, N. (2019). Determining the impact of entrepreneurial orientation and organizational culture on job satisfaction, organizational commitment, and employee’s performance. South Asian Journal of Business Studies, 8(3), 266–282 Shahmohammadi, N. (2015). The relationship between management style with human relations and job satisfaction among guidance schools’ Principals in District 3 of Karaj. Procedia-Social and Behavioral Sciences, 205, 247-253. Sharma, P. (2017). Organizational culture as a predictor of job satisfaction: The role of age and gender. Management-Journal of Contemporary Management Issues, 22(1), 35-48. Singh, R. R., Chauhan, A., Agrawal, S., & Kapoor, S. (2011). Impact of organisational climate on job satisfaction–A comparative study. Singh, A. (2019). Association between organizational norms and employee productivity in higher education. Journal of Applied Research in Higher Education Taplin, I. M., & Winterton, J. (2007). The importance of management style in labour retention. International journal of sociology and social policy. Vahedi, R., & Asadi, A. (2014). Relationship between management styles and performance of the managers and staff of tax administration office of Tehran. European Online Journal of Natural and Social Sciences: Proceedings, 2(3 (s)), pp-2975. Verhofstadt, E., & Omey, E. (2013). The impact of education on job satisfaction in the first job. Faculteit Economie En Bedrijfskunde Working Paper. Walumbwa, F.O., Orwa, B., Wang, P., & Lawler, J.J. (2015). Transformational leadership, organizational commitment, Job satisfaction: A comparative study of Kenyan an U.S, Financial Firms. Human Resource Development Quarterly, 235- 256.329 Yusuf, M. O., Muhammed, U. D., & Kazeem, A. O. (2014). Management of leadership style: An approach to organizational performance and effectiveness in Nigeria. International Journal of Humanities Social Sciences and Education, 1(2), 17-29. Zafar .S. & Vikramjeet ( 2017), “Impact of Prevailing HRM Practices on Job Satisfaction: A Comparative Study of Public and Private Higher Educational Institutions in India International Journal of Business and Management; 12, (1), 178-187. REFERENCES he Strategic Journal of Business & Change Management. ISSN 2312-9492 (Online) 2414-8970 (Print). www.strategicjournals.c Zamini S. et. al., (2011), The relationship between organizational culture and job burnout among the professors and employees in the University of Tabriz, Procedia - Social and Behavioral Sciences, 30, 1964 – 1968 Zeffane, R. (2014). Patterns of organizational commitment and perceived management style: A comparison of public and private sector employees. Human relations, 47(8), 977-1010. Zeffane, R. (2014). Patterns of organizational commitment and perceived management style: A comparison of public and private sector employees. Human relations, 47(8), 977-1010. Zia, Y. A., Khan, F., & Nouman, M. (2014). Participative management and job satisfaction. Available at SSRN 2485702. Zia, Y. A., Khan, F., & Nouman, M. (2014). Participative management and job satisfaction. Available at SSRN 2485702. Zavyalova, E., & Kucherov, D. (2010). Relationship between organizational culture and job satisfaction in Russian business enterprises. Human Resource Development International, 13(2), 225-235. The Strategic Journal of Business & Change Management. ISSN 2312-9492 (Online) 2414-8970 (Print). www.strategicjournals.com trategic Journal of Business & Change Management. ISSN 2312-9492 (Online) 2414-8970 (Print). www.strategicjournals.com
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A Study on Empowerment of Women using Information and Communication Technology (ICT)
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Shanlax International Journal of Arts, Science and Humanities A Study on Empowerment of Women using Information and Communication Technology (ICT) OPEN ACCESS Volume: 6 Special Issue: 1 Month: March Year: 2019 ISSN: 2321-788X Impact Factor: 3.025 Citation: Faiz Jahan, A. “A Study on Empowerment of Women Using Information and Communication Technology (ICT).” Shanlax Internatioal Journal of Arts, Science and Humanities, vol. 6, no. S1, 2019, pp. 57–62. DOI: https://doi.org/ 10.5281/ zenodo.2586382 http://www.shanlaxjournals.in A. Faiz Jahan Assistant Professor of English Justice Basheer Ahmed Sayeed College for Women, Chennai Abstract Information and communication technology (ICT) is an integral part of life in the 21st century. Studies suggest a wide range of ICT applications for education and learning, digital media and empowerment of women. The role of ICT in education is to acquire the required skills that can be used in education and learning process. However, there are subtle drawbacks to women and girls in accessing and using information technology. The need of the hour is therefore to become accustomed to the various tools that can be used to improve personal well-being and social status in the society. In the present study, questionnaires were distributed to 100 students belonging to Arts department. The results obtained were subjected to data analysis. Descriptive statistics was used to analyze the data. Most of the respondents were aged from 17 to 23 years respectively. Majority of the respondents were highly competent in using smart phones (47%) and communication (44%). While, their competency was average or low in the use of spreadsheet (65%). It is quite clear that respondents are more compatible with smart phones than computers. It is therefore suggested that students should be given more computer training to maximize their computer skills, as smart phones have their own limitations in ICT. Keywords: Information and Communication Technology, ICT, Information Technology, Digital media, Education, Women empowerment Introduction The rapid growth in the use of information and communication technologies (ICTs) has brought about a stunning change in the 21st century and has affected modern society’s demands. ICT is becoming more and more important both in everyday life and in education systems. ICT tools are specifically used to increase access to education, strengthen the relevance of education to an increasingly digital workplace, improve the quality of education, facilitate teaching and learning in a committed, active process connected with real life (Andoh, 2012). Globalization and technological change have created a new global economy “driven by technology, information and knowledge” (US Department of Labor, 1999). ICT is one of the most powerful tools of human invention that can transform lifestyle patterns, facilitate learning and create a wide range of opportunities in educational, industrial, digital and IT sectors. In the present scenario, it is essential to acquire the necessary skills to keep abreast of changing technological trends regardless of 57 National Conference on Women and Sustainable Development age or gender. However, with the world rapidly moving into digital media and information, the role of ICT in education is becoming increasingly important and this importance will continue to grow and develop in the 21st century. Education is the process of learning or acquiring knowledge that depends entirely on the quality of teachers. According to futurist Alvin Toffler, “The illiterate of the 21st century will not be those who cannot read and write, but those who cannot learn, unlearn and relearn. The influence of ICT has certainly brought tremendous impact in women’s empowerment. The empowerment of women means increasing the spiritual, political, social, educational, gender or economic strength of the individuals. There are a number of ways to improve women’s economic status through trade, governance, education and health. It also brings countless openings, including small enterprises, self help groups (SHGs), etc. In India, women’s empowerment depends heavily on many different variables, including geographical location, social status and age. Impoverishment, illiteracy, lack of computer literacy and language barriers are factors that inhibit access to ICT infrastructure, especially in developing countries. Another barrier to ICT is the lack of access to women (Arrawatia and Meel, 2012). Most women suffer due to the inaccessibility and use of ICT tools due to lack of infrastructure and incapacity. However, this study primarily focuses on the use of ICT tools in education and learning process. It also examines how information technology in education creates more learning environments centered on students, which often create tensions for teachers and students. Therefore, educational institutions are increasingly required to use ICT to provide students with skills and knowledge. This study aims to determine students’ skills in the use of electronic devices such as basic computers and smart phones. The research was carried out using a quantitative method for the collection of data with the following objectives: Students’ demographics (age, class, use of computers and mobile phones) • Students’ perceived skills in ICT • Students’ application of ICT in education and learning process Review of literature • Wadi and Sonia (2002) emphasized improving the quality of education and training, especially during education expansion. In many ways, ICTs can improve the quality of education by increasing motivation and engagement of learners, facilitating the acquisition of basic skills and enhancing teacher training. • Wheeler (2008) reported information technology as a tool for transforming women’s lives and as a supposed enabler of empowerment. • Hew & Brush (2007) outlined about the attitudes and beliefs of teachers have an impact on the successful integration of ICT into education. • Keong et al. (2005) studied the use of information and communication technology in teaching mathematics. They stressed the need for teacher training and the integration of ICT in the curriculum. • Arrawatia and Meel (2012) emphazied information and communication technology & empowerment of women in India. They addressed the prospects of ICT-supported women’s empowerment networking processes. • Mavura (2015) highlighted ICT for girls and women empowerment. She addressed women’s empowerment is a key factor in determining success of development. 58 Justice Basheer Ahmed sayeed College for Women (Autonomous), Chennai Shanlax International Journal of Arts, Science and Humanities Methodology Participants The present study was carried out in a private college. 100 students belonging to arts department participated in this investigation. The age group of students ranged from 19 to 21years respectively. Data Collection Methods Individual student participants were given questionnaires personally. They were asked to submit within a day A total of 100 questionnaires were collected back from the students with 100% return rate. The collected questionnaires were subjected to data analysis. Instrument The first section of the questionnaire contains students ‘ demographic information based on gender, age, computer knowledge and smart phone experience, etc. The second section focused on their knowledge and skills in the use of ICT. Then, the respondents were asked to assess the use of ICT in the learning process. A reliability test was used to determine the internal consistency of items in the questionnaire by using Cronbach’s Alpha reliability test (Cronbach, 1951). The test was performed using Cronbach alpha statistics software v1.0.5 (Wessa, 2017). Cronbach’s alpha coefficient was found to be 0.992 (arts students). The alpha value of 0.90 is considered excellent, 0.80 very good, and .070 acceptable (Kline, 2005). Data Analyses Data was analyzed using descriptive statistics to calculate the frequencies of the collected data. In this study, the variables observed showed good internal consistency. Results: Demographic information of respondents (Arts students) Teachers’ demographic information comprising of respondents age, computer knowledge and smart phone experience are given in Table 1. Of the 100 respondents, 47% of the respondents (1-2 years) showed smartphone experience while 30% of the students (5-6 years) exhibited proficiency in using computers. Demographic information of students (Arts department) Variable Respondents Age Computer knowledge http://www.shanlaxjournals.in Category (Years) Arts students 17-18 19-20 21-22 21-22 1-2 3-4 5-6 7 and above Frequency 100 36 37 27 27 31 38 19 Nil Percentage (%) 100% 36 37 27 27 27 32 30 11 59 National Conference on Women and Sustainable Development Smartphone Experience 1-2 3-4 5-6 7 and above 47 29 38 3 47 28 29 9 Students’ perceived skills in ICT Respondents were asked to rate their ICT skills on a four-point Likert-type scale ranging from “Cannot use/none (1)” to “High (4)”. As presented in Table 2, majority of the respondents were highly competent in smart phones (47%) and communication (E-mail) (44%). While, most respondents perceived their skills in the spreadsheet as low or cannot use (65%). Table 2 Descriptive Statistics of Respondents (Arts students) Perceived ICT Skills Cannot use (%) Low (%) Moderate (%) High (%) Word processor ICT Skills 28 16 23 33 Spreadsheet 65 17 7 11 Presentation 38 29 19 14 Search engines 23 27 18 32 Communication (e.g. E-mail) 17 13 26 44 Smartphones (e.g. Google Apps ) 13 15 25 47 Cronbach alpha=0.828 Discussion ICT has brought enormous significance in diverse fields such as information technology, digital media, industrial and educational sectors, research and development, etc. The use of ICT tools in enhancing skills in various sectors has completely revolutionized in the development process. ICT in empowering women’s growth has provided spiritual, educational and economic strength of individuals in the society. Mavura (2015a) stressed on empowerment of women in determining development success. Studies show that women suffer from various problems due to lack of education and information. Different types of ICT tools like radio, television, mobile phone and the Internet are used to provide awareness, education and information among women. This knowledge can therefore create a lot of opportunities. It is apparent that the future of any nation depends on youth irrespective of their caste, creed or gender. This paper thus primarily discusses on the influence of electronic gadgets such as computers and smartphones used by women students in education and learning process. In the present study, most students showed high skills in the use of smartphones and communication. In contrast, most respondents had a low preference for spreadsheet applications. It is therefore obvious that respondents excelled in smartphones compared to computers in the education and learning process. Though, applications of computers are indispensable in the learning process it is interesting to note that the student respondents are more comfortable with smartphones, as they are user friendly. Another probable reason may be due to non-affordability or economic conditions and linguistic barriers. The findings are in agreement with Mavura (2015b), who reported that girls and women have less access to technology, thereby significantly reducing educational and economic opportunities. It is also important to develop programs to teach girls at an 60 Justice Basheer Ahmed sayeed College for Women (Autonomous), Chennai Shanlax International Journal of Arts, Science and Humanities early stage using computers and tablets. According to Arrawatia and Meel (2012), the knowledge available in the global scenario is in English language and the downtrodden communities could not understand. This obviously makes it difficult to acquire the universal knowledge. Proper education, together with knowledge, secure jobs and a physical strength can transform the future of a woman from being a fragile, submissive, marginalized, suppressed, voiceless, inferior creature to an independent, strong, positive, exuberant and progressive one. Since education is student-centered and teachers are the stake holders, the present z and skills of future generations are to be developed through ICT and other pedagogical technologies. Through information technology and its applications women have crossed borders rendering yeoman services proving their capacities in plethora of genres. Various Apps such as Google Classroom, Kahoot, Edmodo, Khan Academy, MOOC, NPTEL, Swayam and many more have laid down concrete platforms/forums that have made teaching and learning process more conducive, effective, and, facilitative. As every student is glued to smartphones and tabs, teaching through such devices motivates and triggers interest, even in the less interested students. Though, it is a known fact that every classroom consists of students with mixed abilities and the teacher cannot cater to the personal needs of every individual. However, these gaps can be filled by applying innovative, multifarious and user friendly Apps which empowers them to meet the new challenges and revolutionize the whole gamut of education both at the primary, secondary and higher education levels. This study clearly indicates that most of the respondents frequently used smartphones and integrated google application software in the learning processes. However, the result of this study shows the usage of computer software applications were decreased in learning processes by student respondents. According to Arrawatia and Meel (2012), the use of ICT in learning enables girls and women to receive quality education leading to personal development, which helps them to manage their lives independently. Thus, it is suggested that students should be given adequate hands-on training on how to integrate and use ICT in the learning process. Conclusion This study has clearly demonstrated that the success of ICT in education and learning process is not about computer or software but influencing and empowering women students to acquire requisite computer skills through training programmes and workshops during the course of their study programme right from their entry level. This initiative will certainly enhance students’ capabilities to acquire ICT skills effectively and it will enable them with employment opportunities. References 1. Andoh, C. (2012). Factors influencing teachers’ adoption and integration of Information Communication Technology into teaching: A review of the literature. International Journal of Education and Development using Information and Communication Technology, 8(1), 136-155. 2. Arrawatia, M. A. (Dr.) and Mr. Meel, P. (2012). Information and Communication Technologies & Women Empowerment in India. International Journal of Advanced Research in Computer Engineering and Technology, Volume 1, Issue 8, 3. Cronbach, L.J. (1951) Coefficient alpha and the internal structure of tests. Psychometrika 16:297-334. 4. Hew, K. F. & Brush, T. (2007). Integrating technology into K-12 teaching and learning: current knowledge gaps and recommendations for future research. Educational Technology Research & Development, 55, 223-253. http://www.shanlaxjournals.in 61 National Conference on Women and Sustainable Development 5. 6. 7. 8. 9. 10. 11. 12. 13. Keong, C.C, Horani, S and Daniel, J. (2005). A Study on the Use of ICT in Mathematics Teaching. Malaysian Online Journal of Instructional Technology (MOJIT) Vol. 2, No. 3, pp 43-51. Kline, R. B. (2005). Principles and practice of structural equation modeling (2nd edition). New York: Guildford.Laboratory; http://www.ncrel.org/engauge/skills/21skills.htm;accessed 31 May 2002. Mavura (2015). ICT for girls and women empowerment. http://www.actionaid.org/ghana/ news/ict-girls-and-women-empowerment. Accessed on 26 January 2019. Mavura (2015a). ICT for girls and women empowerment. http://www.actionaid.org/ghana/ news/ict-girls-and-women-empowerment. Accessed on 26 January 2019. Mavura (2015b). ICT for girls and women empowerment. http://www.actionaid.org/ghana/ news/ict-girls-and-women-empowerment. Accessed on 26 January 2019. US Department of Labor (1999). Futurework—Trends and Challenges for Work in the 21st Century. Quoted in EnGauge, “21st Century Skills, ”North Central Regional. Wadi D. H and Sonia, J. (2002).“ICT for Education:Potential and Potency”,in Haddad,W.& Drexler,A.(eds),Technologies for Education: Potentials, Parameters, and Prospects (Washington DC: Academy for Educational Development and Paris:UNESCO),pp.34-37. Wessa, P. (2017). Cronbach alpha (v1.0.5) in Free Statistics Software (v1.2.1), Office for Research Development and Education, URL https://www.wessa.net/rwasp_cronbach.wasp/. Wheeler, D. (2008). “Empowerment Zones? Women, Internet Cafes and Life Transformations in Egypt.” The MIT Press. 62 Justice Basheer Ahmed sayeed College for Women (Autonomous), Chennai
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Research on the Slope Protection Mechanism of Roots
Research journal of applied sciences, engineering and technology
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INTRODUCTION Bischetti et al. (2005) tested eight north Italy plant roots, Operstein and Frydman (2000) analyzed four kinds of Mediterranean plant, Comino and Marengo (2010) analyzed three kinds of shrub roots’ strengthening effect to soil. Most research shows that the ultimate tension of the same plant roots increases with the diameter as power or index function. But for different kinds of plant roots, the comparison of the tensile strength and the quantitative analysis of slope stability were little mentioned. Bischetti et al. (2005) tested eight north Italy plant roots, Operstein and Frydman (2000) analyzed four kinds of Mediterranean plant, Comino and Marengo (2010) analyzed three kinds of shrub roots’ strengthening effect to soil. Most research shows that the ultimate tension of the same plant roots increases with the diameter as power or index function. But for different kinds of plant roots, the comparison of the tensile strength and the quantitative analysis of slope stability were little mentioned. With the rapid development of China's economy, a large number of highways, railways and other infrastructure construction produce many bare slopes, which destroy the original ecological environment, lead to soil and water loss, even landslide instability. As a kind of slope protection materials, vegetation is of great significance for ecological environment and slope protection,which is the good combination of sight, economics and protection. In the ecological slope protection engineering, plant roots can not only provide nutrition and moisture, but also relieve slope instability and erosion, which will be of great importance to avoid slope collapse (Abernethy and Rutherfurd, 2001). Roots interact with surrounding soil, which improves the shearing strength of soil (Schmid and Kazda, 2001). These functions include axial pressure to surrounding soil, which change the structure of the soil. Roots increase contact area between soils, thus increase the friction between them. Root secretion during growth enhances the cohesive force between root and soil. The added value of shear strength has a positive relationship with root content through the shear (Waldron, 1977). There are three kinds of root reinforcement models, which are fibril theory model, the inter-coupling of mechanical model between the vertical root and soil, the inter-coupling of mechanical model between the Roots’ effect for soil reinforcement and slope protection may be valued in two ways: roots’ tensile strength and the shear strength of root-soil complex. Corresponding Author: Juan Wan, School of Civil Engineering and Mechanics, Huazhong University of Science and Technology, Wuhan 430074, China This work is licensed under a Creative Commons Attribution 4.0 International License (URL: http://creativecommons.org/licenses/by/4.0/). 2429 Keywords: Slope protection, roots, stability coefficient, tensile test Keywords: Slope protection, roots, stability coefficient, tensile test Research on the Slope Protection Mechanism of Roots 1, 2Juan Wan, 2Henglin Xiao, 2Jun He and 2Lihua Li 1School of Civil Engineering and Mechanics, Huazhong University of Science and Te Wuhan 430074, China 1School of Civil Engineering and Mechanics, Huazhong University of Science and Technology, Wuhan 430074, China 2 2School of Civil Engineering and Architecture, Hubei University of Technology, Wuhan 430068, China Abstract: This study aims to investigate the slope protection mechanism of roots. In ecological slope protection, plant roots can fix soil and protect slop through biological and mechanical action. However, previous studies on the slope protection mechanism are still not deep enough and inadequate. By taking four kinds of typical plant roots along Wu-Shen Expressway as the research object, through the indoor tensile test and root morphology observation analysis, the tensile strength and ultimate tension were studied and the influence to the stability of the slope was discussed in this study. The results show that the mean ultimate tension of roots is 7.19~29.96 N. The mean tension of shrub roots is 2~4 times greater than that of herb roots. The ultimate tension of the same plant roots increases with the diameter significantly. To the range of improvement, Shrub roots exceed herb ones. It also indicates that the mean tensile strength of roots are 24.48~74.25 MPa. Compared with the steel HRB235, the tensile strength of herb roots is as great as 1/5~1/3, while Shrub roots is about 1/10~1/5. The slope stability coefficient with plant growing is a positive correlation with roots tension and root number through the sliding surface and is a negative correlation with plants weight. In addition, the slope stability coefficient is related to plant density and root morphology. The test results demonstrate that the roots tension with acute angle or right angle to the landslide surface and the roots shear stiffness with obtuse angle can improve the performance of slope’s anti-slide. Four kinds of plants can improve the stability coefficient of shallow soil. As for the slope protection effect, herbage is superior to shrub. In general, grass-shrub mixed community is the ideal system for slope protection. Published: August 05, 2013 Published: August 05, 2013 p. Accepted: January 25, 2013 Submitted: December 20, 2012 MATERIALS AND METHODS The species considered in this study are plant roots along the Wu-Shen Expressway. Four kinds of plants are tested, including the Bokbunja, Dilatatum, Sedge and Mugwort. The first two are shrub and the rest are herbage. Their pictures are shown in Fig. 1. Fig. 2: Electronic tensioner measurement The roots of plants were dug out using completely mining method. Plant roots, whose scarfskin was undamaged, diameter changed little and root straight were selected, cleansed and cut to samples with 10 cm in length. The diameter of roots was measured using vernier caliper. After that, the samples were labeled. Fig. 3: Digital force gauge measurement Due to different diameter range various equipment testing, the experiments used two equipments to test the roots of different diameters. The larger diameter (more than 1 mm) roots were measured by the electronic tensioner under the load of 100 kN. Figure 2 shows the measurement process. The smaller diameter (less than 1 mm) roots were tested by the digital force gauge under the load of 500 N. Figure 3 shows the measurement process. The loading speed was 10 mm/min. Fig. 3: Digital force gauge measurement where, p is the tensile strength (N/mm2), T indicates the ultimate tension (N) and D is the diameter of fracture surface (mm). To avoid specimens to slip in the fixture because of the root skin stripping, rubber gaskets were added in the fixture to increase friction. Test data were effective while the breakpoint of roots is far from the fixture obviously, because roots were easily pinched off during the loading process. The experiments that specimens were slipping or clipped off were regarded as failure tests. INTRODUCTION Tensile strength may be measured by in situ root pull- out tests (Docker and Hubble, 2008) and indoor tensile tests (Bischetti et al., 2009). Root tensile strength is influenced by plant species and root site environment etc, so large amounts of data are needed to full. Res. J. Appl. Sci. Eng. Technol., 6(13): 2429-2435, 2013 (a) Bokbunja (b) Dilatatum (c) Sedge (d) Mugwort Fig. 1: Four kinds of plant roots (a) Bokbunja (b) Dilatatum horizontal root and soil (Waldron, 1977). The first model deduces the shearing strength of root-soil complex. The second model can get the maximum anchorage force of the root. But they did not analyze quantificationally the influence of root to slope stability. Besides, root morphology and architecture are more than these three, it is necessary to analyze the effect of soil reinforcement and slope protection of other types of root. (b) Dilatatum (a) Bokbunja (c) Sedge (d) Mugwort (c) Sedge (d) Mugwort In order to investigate the slope protection mechanism of roots, a series of tensile tests have been carried out in this study. Four kinds of typical plant roots along Wu-Shen Expressway were taken as the research object. Indoor tensile tests were conducted, the root morphology was observed and the tensile strength and ultimate tension were analyzed quantificationally. The influence to slope stability was studied according to the test results and the findings of this study will provide theoretical support for root slope protection. (c) Sedge (d) Mugwort Fig. 1: Four kinds of plant roots Fig. 2: Electronic tensioner measurement EXPERIMENT TESTS AND RESULTS The distribution characteristics of root morphology: The root diameter of herb Sedge and Mugwort is smaller than the other two types of roots. Based on the root collar, roots present radioactive distribution along the depth. The root diameter of Sedge is between 0.24 mm and 0.44 mm, the Mugwort is 0.4~0.78 mm. Root numbers decrease with the increase of deepness. Roots distribute intensively in 0~20 cm soil layer and decrease rapidly in 20~25 cm layer. The ultimate tension of roots T was gat from the tests. The tensile strength of roots p was calculated using the following Eq. (1): Shrub Bokbunja and Dilatatum are vertical root types, which consist of taproot and lateral root. Taproot grows vertical down. Lateral root grow beside taproot 2 4T p D π = (1) (1) 2430 Res. J. Appl. Sci. Eng. Technol., 6(13): 2429-2435, 2013 (a) Sedge 4 5 6 7 8 9 10 0.2 0.3 0.4 0.5 T/N D/mm Data Simulation 6 8 10 12 14 16 0.2 0.4 0.6 0.8 1 T/N Data Simulation (a) Sedge (b) Mugwort (c) Bokbunja (d) Dilatatum Fig. 4: Root ultimate tension vs diameter curves 4 5 6 7 8 9 10 0.2 0.3 0.4 0.5 T/N D/mm Data Simulation 6 8 10 12 14 16 0.2 0.4 0.6 0.8 1 T/N D/mm Data Simulation 0 10 20 30 40 50 60 70 80 90 100 0 1 2 3 4 5 T/N D/mm Data Simulation 0 10 20 30 40 50 60 0 0.5 1 1.5 2 2.5 T//N D/mm Data Simulation and branch gradually. Root diameter of a single plant varies, which becomes gradually thin from root collar to the end. The diameter of fracture surface is adopted in test result. Taproot diameter of Bokbunja is about 1.74~4.06 mm and its depth is about 45 cm. Lateral root diameter is about 0.38~1.2 mm. Taproot diameter of Dilatatum is about 1.42~2.26 mm and its depth is about 40 cm. Lateral root diameter is about 0.26~0.74 mm. The dense layers of roots mainly distribute at 0~ 15 cm layer. 4 5 6 7 8 9 10 0.2 0.3 0.4 0.5 T/N Data Simulation (a) Sedge 0.2 0.3 0.4 0.5 D/mm 6 8 10 12 14 16 0.2 0.4 0.6 0.8 1 T/N Data Simulation The ultimate tension of roots: Root diameter from Sedge and Mugwort is small and uniform, which was tested by the digital force gauge. EXPERIMENT TESTS AND RESULTS The success rate of the test was 58% for Sedge and 54% for Mugwort. The tensile failure of successful tests shows that root skin open a joint at first, next open the second, the third, etc. With the increase of the force, finally the root fiber is pulled off. Lateral root diameter from Bokbunja and Dilatatum is 0.26~1.2 mm, which is measured by the digital force gauge. Taproot diameter is 1.42~4.06 mm, which is tested by the electronic tensioner. Their failure surface is serrated. The success rate of the test was 50% for Bokbunja and 40% for Dilatatum. (b) Mugwort D/mm 0 10 20 30 40 50 60 70 80 90 100 0 1 2 3 4 T/N D/ Data Simulation The diameter D was used as X-axis and the ultimate tension T as the Y-axis. Test data and simulation curves were shown in Fig. 4. The test results of root ultimate tension and the regession relation with diameter are listed in Table 1. The experiment research shows that four kinds of plant roots have strong tensile capacity. Among them, the tension of Bokbunja is the widest, whose tension is 3.8 N when diameter is 0.38 mm and tension is 82.7N when diameter is 4.06 mm. The mean ultimate tension order of the four roots is Bokbunja>Dilatatum> Mugwort> Sedge, which is the same sequence with their mean diameter. The mean ultimate tension of shrub roots is greater than herb. The ultimate tension of the same kind of roots amplifies with the increase of diameter. Power function relation 1 1 b T a D = (a1>0,b1>0) is basically met between the ultimate tension and diameter by using the Regression Analysis. There was significant correlation between them and the correlation coefficient is more than 0.85. In the regression equations, a1 of Bokbunja and Dilatatum is big and b1>1 and a1 of Sedge and Mugwort is small and b1<1. It can be seen from Fig. 4 that shrub roots have higher tension improvement than herb. The tensile strength of roots: The test results of root tensile strength are shown in Table 2. The simulation curves between tensile strength p and diameter D are seen in Fig. 5. (d) Dilatatum D/mm Roots with the smaller diameter show great tensile strength. The tensile strength of Sedge with 0.24 mm diameter may reach 130.42 MPa. On the contrary, roots Fig. EXPERIMENT TESTS AND RESULTS 4~0.78 0.56 30.97~57.30 48.05 p = 21.484D-1.2331 0.9370 40 50 60 70 80 90 100 110 120 130 140 0.2 0.3 0.4 0.5 p/(N/mm2) Data Simulation 20 30 40 50 60 70 80 90 0.2 0.4 0.6 0.8 1 p/(N/mm2) Data Simulation (a) Sedge (b) Mugwort (c) Bokbunja (d) Dilatatum Fi 5 R t t il t th di t D/mm D/mm 0 10 20 30 40 50 60 0 1 2 3 4 5 p/(N/mm2) D/mm Data Simulation 0 20 40 60 80 100 120 140 0 0.5 1 1.5 2 2.5 p/(N/mm2) D/mm Data Simulation (d) Dilatatum D/mm Fig. 5: Root tensile strength vs diameter curves with the thicker diameter show weak tensile strength. The tensile strength of Bokbunja with 4.06 mm diameter is only 6.39 MPa. The mean tensile strength order of the four roots is Sedge>Mugwort> Dilatatum>Bokbunja, which is the opposite sequence with their mean diameter order. Compared with the steel HRB235, of which the tensile strength is 235 MPa, herb roots tensile strength is as great as 1/5~1/3, while that of Shrub roots is about 1/10~1/5. The mean tensile strength of herb roots is greater than shrub. As for roots with the same diameter, the tensile strength of herb is greater than Shrub generally. Thus it can be seen that herbaceous plants have an important role to shallow slope protection. relation relation 2 2 b p a D = (a2>0,b2<0) is basically met between the tensile strength and diameter by using the Regression analysis. There was significant correlation between them and the correlation coefficient is more than 0.9. In the regression equations, a2 and b2 of Bokbunja and Dilatatum are bigger than Sedge and Mugwort. This indicates that the amplitude decreasing rate of herb roots is more than that of shrub. EXPERIMENT TESTS AND RESULTS 4: Root ultimate tension vs diameter curves 2431 Res. J. Appl. Sci. Eng. Technol., 6(13): 2429-2435, 2013 Table 1: The test results of root ultimate tension Plant Diameter D (mm) Mean diameter D (mm) ultimate tension T (N) Mean ultimate tension T’ (N) Regression equation Correlation coefficient R Bokbunja 0.38~4.06 1.49 3.8~82.7 29.96 T = 17.65D1.2268 0.9742 Dilatatum 0.26~2.26 0.94 6.2~52.2 19.63 T = 19.489D1.0843 0.9567 Sedge 0.24~0.44 0.36 5.6~9.2 7.19 T = 14.41D0.6858 0.8755 Mugwort 0. 4~0.78 0.56 7.2~14.8 10.84 T = 16.874D0.7669 0.8578 Table 2: The computed result of root tensile strength Plant Diameter D (mm) Mean diameter D (mm) Tensile strength P (MPa) Mean tensile strength p’ (MPa) Regression equation Correlation coefficient R Bokbunja 0.38~4.06 1.49 6.39~49.91 24.48 p = 22.472D-0.7732 0.9387 Dilatatum 0.26~2.26 0.94 13.01~116.78 44.00 p = 24.814D-0.9157 0.9407 Sedge 0.24~0.44 0.36 56.30~130.42 74.25 p = 18.348D-1.3142 0.9609 Mugwort 0. 4~0.78 0.56 30.97~57.30 48.05 p = 21.484D-1.2331 0.9370 (a) Sedge (b) Mugwort (c) Bokbunja (d) Dilatatum Fig. 5: Root tensile strength vs diameter curves 40 50 60 70 80 90 100 110 120 130 140 0.2 0.3 0.4 0.5 p/(N/mm2) D/mm Data Simulation 20 30 40 50 60 70 80 90 0.2 0.4 0.6 0.8 1 p/(N/mm2) D/mm Data Simulation 0 10 20 30 40 50 60 0 1 2 3 4 5 p/(N/mm2) D/mm Data Simulation 0 20 40 60 80 100 120 140 0 0.5 1 1.5 2 2.5 p/(N/mm2) D/mm Data Simulation Table 1: The test results of root ultimate tension g Mugwort 0. 4~0.78 0.56 7.2~14.8 10.84 T = 16.874D0.7669 0.8578 Table 2: The computed result of root tensile strength Plant Diameter D (mm) Mean diameter D (mm) Tensile strength P (MPa) Mean tensile strength p’ (MPa) Regression equation Correlation coefficient R Bokbunja 0.38~4.06 1.49 6.39~49.91 24.48 p = 22.472D-0.7732 0.9387 Dilatatum 0.26~2.26 0.94 13.01~116.78 44.00 p = 24.814D-0.9157 0.9407 Sedge 0.24~0.44 0.36 56.30~130.42 74.25 p = 18.348D-1.3142 0.9609 Mugwort 0. THEORY ANALYSIS OF ROOT SLOPE PROTECTION Secondly, the influence of one root is considered. Thirdly a plant and last plants with certain spacing is tested. ( ) ( ) ( ) 1 1 2 ' cos tan sin tan tan sin n n f x y i i i i i i x y C S S T T K S S H G α φ α φ θ γ θ = =   + +     = + + ∑ ∑ (5) When there is no root, the glide force of the sliding mass is sin G θ ,the anti-slip force is the total of the bond force and friction cos tan f C A G θ φ + . The stability coefficient of the sliding mass without root is expressed as: (5) It can be seen that slope stability coefficient with plant growing is a positive correlation with roots tension and number through the sliding surface, but a negative correlation with plants weight. It is also related to the plant density and root morphology. 1 cos tan sin f C A G K G θ φ θ + = (2) (2) where, G is the weight of the sliding mass;θ indicates the slope dip angle; N signifies the holding power to the sliding mass from lower soil; , f C φ are the cohesive force and internal friction angle of soil, respectively; A is the area of sliding surface. Case study: A slope 75 θ = ° along Wu-Shen Expressway was analyzed. The soil bulk density was 3 18kN/m γ = , the cohesive force and internal friction angle were 2.5kPa, 8 fc φ = = ° , respectively. For the plant spacing, shrub is 20cm x S = , 20cm y S = , herbage is 2cm x S = , 2cm y S = .The weight of a plant and some relevant parameter of roots were list in Table 3. Among them, αi was replaced by the effective angle between the slope and roots which was the highest occurrence frequency. Ti was substituted for the mean ultimate tension. Along different depths the effective numbers of roots was list in Table 4. These parameters were inserted in Eq. (2) and (5). The stability coefficients of slope with and without roots along different depths are listed in Table 5. THEORY ANALYSIS OF ROOT SLOPE PROTECTION Formula derivation: In the slope, the tension crack surface often occurs that is parallel to slope surface or the bottom surface. In order to find out the influence of The tensile strength of the same kind of roots decreases with the increase of diameter. Power function 2432 Res. J. Appl. Sci. Eng. Technol., 6(13): 2429-2435, 2013 Fig. 6: The force diagram of the slope from being realized. If the root can anchor into the steady geotechnical layer, the sliding mass need conquer the shear force itself. If the root is small, the improvement to the stability may be ignored. It is supposed the weight of a plant is G, there are n roots whose angles with the sliding plane are 0 90 i α ° ° < ≤ (i =1, 2…n). The stability coefficient of the sliding mass with a plant is expressed as: ( ) ( ) ( ) ( ) 2 '' 1 1 ' cos tan cos tan sin ' sin n n f i i i i i i C A G G T T K G G θ φ α φ α θ = = + + + + = + ∑ ∑ (4) ( ) ( ) ( ) ( ) 2 '' 1 1 ' cos tan cos tan sin ' sin n n f i i i i i i C A G G T T K G G θ φ α φ α θ = = + + + + = + ∑ ∑ (4) (4) Fig. 6: The force diagram of the slope X axis is up along slope, Y axis is parallel to slope and vertical to X axis. Sx, Symean the spacing along X and Y axis, respectively. H indicates the thickness of the slope andγ is the soil bulk density. the root tensile capacity and distribution characteristics to the slope stability, the sliding mass parallel to slope surface was analyzed. The force diagram is shown in Fig. 6. If the root distribution of plants were the same, plants have two aspects: one the one hand roots improve slope stability coefficient, one the other hand the weight of plants reduce its stability. The slope stability coefficient with plants is shown in Eq. (5): The analysis idea is as follows. Firstly, the steady- state conditions of the sliding mass without roots are analysed. THEORY ANALYSIS OF ROOT SLOPE PROTECTION If there is a root whose angle to the sliding surface isα , the sliding mass slips. The root will be subjected to tension when0 90 α ° ° < ≤ . The root will be compressed when 180 α ° ° 90 << . When 0 90 α ° ° <≤ , the root is subjected to tension. The sliding soil need to overcome not only the cohesive force and internal friction, but also the root tension T. The tension will have two effects. On the one hand, the component force perpendicular to sliding surface will occur. On the other hand, the component force parallel to sliding surface will occur. The stability coefficient of the sliding mass with a single root is expressed as: In order to realize the effect of various roots on slope stability along different depths, the fitting curve of stability coefficient vs depth is shown in Fig. 7. ( ) 2 ' cos tan cos sin tan sin sin f C A G T K G G θ φ α α φ θ θ + + = + (3 (3) It is evident from Fig. 7 that the stability coefficient decreases gradually along depth regardless of plant roots. The decreasing amplitude order of the stability coefficient is Mugwort> Sedge> Bokbunja> When α ° >90 , the root is compressed while the sliding mass is sliding, whose tensile strength is far 2433 Res. J. Appl. Sci. Eng. Technol., 6(13): 2429-2435, 2013 Fig. 7: Stability coefficient vs depth curves 0 2 4 6 8 10 12 14 0 0.05 0.1 0.15 0.2 0.25 0.3 0.35 coefficient of stability Depth/m No plants Bokbunja Dilatatum Sedge Mugwort bili ffi i d h 0 2 4 6 8 10 12 14 0 0.05 0.1 0.15 0.2 0.25 0.3 0.35 coefficient of stability Depth/m No plants Bokbunja Dilatatum Sedge Mugwort coefficient of stability Fig. 7: Stability coefficient vs depth curves Fig. 7: Stability coefficient vs depth curves Table 3: The calculation parameters of plants Plant Weight of a plant/N Mean ultimate tension/N α /° Bokbunja 0.93 29.96 80 Dilatatum 0.88 19.63 80 Sedge 0.04 7.19 90 Mugwort 0.03 10.84 88 T bl 4 Th ff ti b f t l diff t d th Table 3: The calculation parameters of plants herb plants can green slope rapidly in the early days, it is easy to degenerate and change to bare land. THEORY ANALYSIS OF ROOT SLOPE PROTECTION So grass- shrub mixed community is the ideal system for slope protection taking short-term and long-term effect, shallow and deep result into account. During counting process of slope stability coefficient, mean tension and angle were adopted to simple calculation, which was a certain deviation. It is necessary to build distribution models of root tension and root morphology and calculate using the finite element method. Table 4: The effective numbers of roots along different depths Depth /cm Table 4: The effective numbers of roots along different depths Plant Depth /cm ---------------------------------------------------------- 10 15 20 25 30 Bokbunja 5 4 2 2 1 Dilatatum 7 5 3 2 1 Sedge 3 3 3 1 0 Mugwort 4 4 4 1 0 Table 5: The stability coefficient of slope along different depths REFERENCES HRB235, herb roots tensile strength is as great as 1/5~1/3, while Shrub roots is about 1/10~1/5. The mean tensile strength of herb roots is greater than shrub. The tensile strength of the same plant roots decreases with the diameter. Abernethy, B. and D. Rutherfurd, 2001. The distribution and strength of riparian roots in relation to riverbank reinforcement. Hydrol. Process., 15: 63-79. Four kinds of plants can improve the stability coefficient of shallow soil. When the depth is less than 25 cm, along different depths the stability coefficient shows that Mugwort>Sedge>Bokbunja>Dilatatum >No plant. The slope protection effect of herb roots is superior to shrub ones. When the depth is more than 25 cm which is beyond the affected depth of Sedge and Mugwort, the stability coefficient of Sedge and Mugwort is less than slope without plants. The slope protection effect of Bokbunja and Dilatatum roots is weak. The stability coefficient decreases gradually along depth regardless of plant roots. The decreasing order of the stability coefficient is Mugwort>Sedge> Bokbunja>Dilatatum>No plant. Grass-shrub mixed community is the ideal system for slope protection when taking the short-term and long-term effect, shallow and deep result into account. Bischetti, G., E. Chiaradia, T. Simonato, B. Speziali, B. Vitali, P. Vullo and A. Zocco, 2005. Root strength and root area ratio of forest species in Lombardy (Northern Italy). Plant Soil, 278: 11-22. Bischetti, G., E. Chiaradia, T. Epis and E. Morlotti, 2009. Root cohesion of forest species in the Italian. Alps. Plant Soil, 324: 71-89. Comino, E. and P. Marengo, 2010. Root tensile strength of three shrub species: Rosa canina, Cotoneaster dammeri and juniperus horizontalis-soil reinforcement estimation by laboratory tests. Catena., 82: 227-235. Docker, B. and T. Hubble, 2008. Quantifying root- reinforcement of river bank soils by four Australian tree species. Geomorphology, 10: 401-418. Operstein, V. and S. Frydman, 2000. The influence of vegetation on soil strength. Ground Improvement, 4: 81-89. Schmid, I. and M. Kazda, 2001. Vertical distribution, radial growth of coarse roots in pure, mixed stands of fagus sylvatica, picea abies. Canadian J. Forest Res., 31: 539-548. CONCLUSION Plants have a two-phase effect to slope stability. The roots improve slope stability coefficient, but the weight of plants reduce its stability. Roots may improve anti-slide performance and stability coefficient of shallow slope. The improvement of slope’s anti-slide performance through roots shows two aspects: roots tension with acute angle or right angle to the landslide surface and roots shear stiffness with obtuse angle. The slope stability coefficient formula with plants suggests that slope stability coefficient with plant growing shows a positive correlation with roots tension and number through the sliding surface, but a negative correlation with plants weight. It is also related to the plant density and root morphology. le 5: The stability coefficient of slope along different depths Table 5: The stability coefficient of slope along different depths Depth/cm Plant Depth/cm --------------------------------------------------------- 10 15 20 25 30 No plant 1.48 1 0.76 0.61 0.52 Bokbunja 2.12 1.34 0.89 0.72 0.56 Dilatatum 2.07 1.28 0.88 0.68 0.54 Sedge 5.53 3.76 2.85 1.17 0.51 Mugwort 11.91 8.06 6.10 1.68 0.51 Dilatatum>No plant. When the depth is shallow (H<25 cm), four roots play a role whose stability performance and are superior to the slope without roots. When H>25 cm, shrub roots still works. The stability performance of slope with Bokbunja and Dilatatum exceed those without roots. But the effective depth of herb roots is limited and the stability performance of slope with Mugwort and Sedge is inferior to those without roots. The mean ultimate tension of the four roots is 7.19~29.96 N. The order is Bokbunja>Dilatatum> Mugwort>Sedge. Shrub roots are greater than herb roots. The ultimate tension of the same plant roots increases with the diameter. Thus it can be seen that slope protection effect of herb roots is superior to shrub ones. But herb roots is usually shallow to shrub ones. Shrub roots may still protect slope beyond herb ones affected depth. Though The mean tensile strength of the four roots are 24.48~74.25 MPa. The order is Sedge>Mugwort> Dilatatum>Bokbunja. Compared with the steel 2434 Res. J. Appl. Sci. Eng. Technol., 6(13): 2429-2435, 2013 ACKNOWLEDGMENT This study is supported by the Key Project of Ministry of Education of China (No. 2010133), the Program for New Century Excellent Talents in University of Ministry of Education of China (No. NCET-11-0962) and the National Natural Science Foundation of China (No. 51178166). Waldron, L., 1977. The shear resistance of root- permeated homogeneous and stratified soil. Soil Sci. Soc. Amer., 41: 843-849. 2435
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Efficacy of sirolimus for the prevention of recurrent pneumothorax in patients with lymphangioleiomyomatosis: a case series
Orphanet journal of rare diseases
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© The Author(s). 2018 Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. Abstract Pneumothorax is one of the most common symptoms in patients with lymphangioleiomyomatosis (LAM). However, current management strategies for patients with LAM who present with recurrent pneumothorax remain inadequate. Here, we describe the successful prevention of recurrent pneumothorax by sirolimus treatment in five women with LAM. Before sirolimus treatment, all patients had received supplemental oxygen support, repeated chest tube drainage, or surgeries for management of the recurrent pneumothorax. Sirolimus treatment was initiated when the pneumothorax was completely resolved, and no patient developed pneumothorax during treatment. Moreover, they exhibited a significantly improved subjective quality of life, increased exercise capacity, and mild adverse effects such as mucositis, irregular menstruation, and delayed wound healing. On discontinuation of sirolimus or in the event that the plasma sirolimus level was markedly low, pneumothorax tended to relapse. The findings from these cases provide valuable insights that will aid in the improvement of treatment strategies for patients with LAM and recurrent pneumothorax. Keywords: Sirolimus, Lymphangioleiomyomatosis, Pneumothorax, Treatment strategy, Recurrence Zhou et al. Orphanet Journal of Rare Diseases (2018) 13:168 https://doi.org/10.1186/s13023-018-0915-2 Zhou et al. Orphanet Journal of Rare Diseases (2018) 13:168 https://doi.org/10.1186/s13023-018-0915-2 Open Access Efficacy of sirolimus for the prevention of recurrent pneumothorax in patients with lymphangioleiomyomatosis: a case series Li Zhou, Ruoyun Ouyang*, Hong Luo, Siying Ren, Ping Chen, Yating Peng, Ting Liu and Guiqian Liu Introduction published in 2016 [4], sirolimus is recommended for the following types of patients with LAM: patients with moderately impaired lung function [a forced expiratory volume in 1 s (FEV1) of less than 70% predicted] or pro- gressively declining lung function (decline rate for FEV1, over 90 ml/year) and patients with chylous effusion. However, to date, sirolimus has not been recommended for patients with LAM presenting with pneumothorax. Here, we describe the clinical course of five women with LAM who presented with recurrent pneumothorax that was successfully prevented by sirolimus treatment. We also discuss the effectiveness of sirolimus therapy and other therapeutic options for the prevention of pneumo- thorax recurrence in patients with LAM, in an attempt to promote the development of better treatment strat- egies for this patient population. Lymphangioleiomyomatosis (LAM) is a rare, progressive, cystic lung disease that mostly affects women of child-bearing age and is characterized by abnormal smooth muscle cell proliferation. LAM is associated with a series of clinical manifestations such as dyspnea, recur- rent pneumothorax, hemoptysis, chylous effusion, renal angiomyolipoma (AML), retroperitoneal masses, and re- spiratory failure [1]. Pneumothorax is a common mani- festation of LAM. Previous studies have demonstrated that approximately 66% of patients with LAM may ex- hibit pneumothorax; importantly, 70% of these patients may experience recurrent ipsilateral or contralateral pneumothoraces [2, 3]. However, management strategies for recurrent spontaneous pneumothorax in patients with LAM remain controversial and inadequate. Siroli- mus, a common mammalian target of rapamycin (mTOR) inhibitor, is considered the first effective drug for patients with LAM. According to the guidelines Case 1 * Correspondence: ouyangruoyun@csu.edu.cn Department of Pulmonary and Critical Care Medicine, The Second Xiangya Hospital, Central South University, 139 Renmin Road, Changsha, China A 33-year-old female nonsmoker with a 4-month history of intermittent chest pain and dyspnea at rest, which Zhou et al. Orphanet Journal of Rare Diseases (2018) 13:168 Page 2 of 6 Page 2 of 6 demonstrated that the renal mass consisted of mal- formed blood vessels, fusiform smooth muscle bundles, and adipose tissue. Immunohistochemical staining re- vealed positive expression of human melanoma black 45 (HMB45), smooth muscle actin (SMA), and cluster of differentiation 34 (CD34). She underwent bilateral CTD and when her lungs markedly re-expanded, chest HRCT was performed and revealed multiple, diffuse, round, thin-walled cysts in both lungs. TSC gene mutation was not seen. The patient opted for a conservative manage- ment strategy with observation and intermittent supple- mental oxygen administration after complete resolution of the pneumothorax. However, 4 months later, the pa- tient developed left followed by right pneumothorax. She was hospitalized for over 30 days, and after complete resolution of the pneumothoraces, she began sirolimus treatment. The plasma sirolimus level was maintained at 4–5 ng/ml in repeated measurements. The patient was followed for > 1 year without pneumo- thorax recurrence, and she could perform all types of or- dinary exercises, including running, mountain climbing, cycling, housekeeping, and other outdoor activities. The only sirolimus-associated adverse effect was a mildly intermittent menstruation disorder. A follow-up PFT re- vealed an FVC of 2.08 l (61% predicted), an FEV1 of 2.04 l (70% predicted), an FEV1/FVC ratio of 98% (87% predicted), a diffusing capacity for carbon monoxide (DLCO) of 4.70 mmol/kPa/min (75% predicted), and a total lung capacity of 3.13 l (68% predicted). She could cover a distance of 550 m in 6MWT. However, the pa- tient discontinued sirolimus after 1.5 years without seek- ing advice from her physicians because she was planning to conceive for the second time. Three months later, she presented with left chest pain and an uncomfortable feeling in her chest on movement. She received supple- mental oxygen support at home for 5 days, following which a chest radiograph revealed left pneumothorax with 30% lung compression. Over the next 2 months, she experienced two episodes of right pneumothorax. She was hospitalized again and remained unable to work or perform regular activities. recurred every 2 weeks, was admitted to our hospital at 31 weeks of gestation. Four months ago, she had been admitted after experiencing these symptoms for the first time. A chest radiograph at that time revealed left hydropneumothorax with 90% lung compression. The patient received closed chest tube drainage (CTD). How- ever, left pneumothorax recurred during rest or minimal activity in the 20th, 25th, 28th, and 30th weeks of gesta- tion. For every recurrent episode, she was admitted to a local hospital, where she received CTD and was dis- charged only after radiographic confirmation that the pneumothorax had completely resolved. At the current admission, arterial blood gas analysis indicated type I re- spiratory failure with a partial pressure of oxygen (PaO2) of 51 mmHg. The patient was treated with supplemental oxygen and continuous CTD. Between the 31st and 32nd weeks of gestation, abdominal ultrasound revealed that the umbilical cord was twisted around the neck of the fetus. At 33rd weeks, the patient underwent a cesarean section and successfully delivered a baby with a low birth weight of 1720 g and normal Apgar scores. High-resolution computed tomography (HRCT) revealed small, thin-walled cystic lesions diffused throughout all lung fields. The serum level of vascular endothelial growth factor-D (VEGF-D) was 6608 pg/ml. The patient was diagnosed with LAM, and she began treatment at a dose of 2 mg/day from 28 days after delivery. At 18 months after treatment initiation, the patient’s exer- cise capacity and quality of life exhibited considerable improvement, and she was able to resume work. She was followed up for 3 years and had not experienced re- current pneumothorax at the time of writing this report. She could perform all daily activities, including jogging, housekeeping, and routine work. The only sirolimus- associated adverse effect was mucositis, which gradually ameliorated and resolved with time during the course of sirolimus treatment. A follow-up pulmonary function test (PFT) revealed a forced vital capacity (FVC) of 2.20 l (75.3% predicted), FEV1 of 1.85 l (66.3% predicted), and an FEV1/FVC ratio of 84.1% (100% predicted). Moreover, she could cover a distance of 480 m in a 6-min walk test (6MWT). Her baby showed normal growth and remained healthy without breast milk. Case 3 A 31-year-old female nonsmoker presented with chest pain and dyspnea at rest. Chest HRCT revealed right pneumothorax with 90% lung compression and multiple bilateral pulmonary bullae. The patient received CTD and oxygen supplementation, followed by bullectomy in the right upper lung lobe. Postoperative H&E staining of lung tissue revealed small spindle-shaped cells distrib- uted alongside bronchioles, blood vessels, and lymph vessels. Immunohistochemical staining demonstrated positive expression of HMB45, SMA, estrogen receptor (ER; 80%), and progesterone receptor (PR; 80%). Considering her Case 2 A 23-year-old female nonsmoker was admitted to our hospital with 6 days of dyspnea. The chest radiograph revealed bilateral hydropneumothoraces (50% and 80% compression in the left and right lungs, respectively). Two months ago, a large intraperitoneal mass had been detected during prenatal examination, and the patient underwent laparatomy with abdominal mass resection and left nephrectomy. Postoperative pathological exam- ination with hematoxylin and eosin (H&E) staining Page 3 of 6 Zhou et al. Orphanet Journal of Rare Diseases (2018) 13:168 Page 3 of 6 and the treatment was discontinued. One month later, she presented with swollen, painful ankles and fingers. The plasma sirolimus level at that time was > 15 ng/ml. The findings of rheumatological and immunological ex- aminations were unremarkable. The ankle and finger pain was considered a side effect of sirolimus treatment; therefore, the dose was reduced to 1 mg/day. The ankle pain resolved; however, the patient developed slight fever, and clinical examinations revealed that the tuber- culosis had relapsed. Accordingly, anti-tuberculosis ther- apy was restarted. Four months later, she experienced recurrent dyspnea and right pneumothorax; the plasma sirolimus level was 0.01 ng/ml. The sirolimus dose was increased to 2 mg/day, and she additionally received supplemental oxygen support. Two months later, the plasma sirolimus level was 2.97 ng/ml, and a chest radio- graph revealed complete resolution of the pneumothorax. Sirolimus-associated side effects included mild mucositis, joint pain, and menoxenia. At the time of writing this re- port, the patient had been followed up for > 3 years, with gradually improved respiratory symptoms. She exhibited an improved quality of life and was able to perform daily activities such as housework, jogging, cycling, and moun- tain climbing. A follow-up PFT revealed an FVC of 3.39 l (120.2% predicted), FEV1 of 2.38 l (90.5% predicted), and FEV1/FVC ratio of 70.2% (86.2% predicted). The distance covered in 6MWT was 510 m. age and the fact that it was her first episode of pneumo- thorax, sirolimus therapy was not initiated. During the fol- lowing 6 months, the patient presented with unilateral pneumothorax with 30% lung compression and was unable to resume work, and she expressed concern about the recur- rence. Nine months later, she was readmitted with bilateral pneumothoraces (compression of the right and left lungs: 95% and 70%, respectively). Case 4 A 38-year-old female nonsmoker with an 8-year history of recurrent dyspnea and hemoptysis, which had been aggravated since a week, was admitted to our hospital. She had experienced right chest pain and mild dyspnea following a sneeze 8 years ago, and chest radiography at that time confirmed right pneumothorax. Chest HRCT revealed bilateral, diffuse, round, thin-walled cysts with varying sizes. She was clinically diagnosed with tubercu- losis and received anti-tuberculosis therapy for 6 months. Two years later, the patient underwent pleurodesis under video-assisted thoracoscopic surgery (VATS) because of recurrent pnuemothoraces and for further evaluation of the thin-walled cystic lesions. Postoperative pathological examination of lung tissue revealed the characteristics of pulmonary LAM. Immunohistochemical examination demonstrated positive expression of HMB45, SMA, ER, and PR. Over the next 3 years, she experienced recurrent pneumothorax, mainly in the right lung. At the current admission, the chest radiograph revealed right pneumo- thorax with 60% lung compression. Two days later, the patient exhibited severe dyspnea with cyanotic lips and nails, and unconsciousness. Arterial blood gas analysis revealed type I respiratory failure with a PaO2 of 45.5 mmHg, while a chest radiograph showed massive bilateral pneumothoraces. On resolution of the pneu- mothoraces, the patient opted to begin sirolimus treat- ment at 2 mg/day. She was diagnosed with recurrent tuberculosis at the same time, and anti-tuberculosis therapy was also initiated. The plasma sirolimus level was 3.9 ng/ml. Following anti-tuberculosis treatment for 1 year, her respiratory symptoms completely resolved, Case 2 She successively received sup- plemental oxygen support, CTD, and left chemical pleurod- esis with 50 ml high-sugar + 5-ml lidocaine infusion and autologous blood for sclerification. Eventually, the chest tube was successfully removed, and the patient opted to begin sir- olimus treatment at 2 mg/day. Follow-up plasma sirolimus levels ranged from 6 to 10 ng/ml. At the time of writing this report, the patient had been followed up for 2.5 years with- out recurrence, had resumed her job, and was able to per- form ordinary exercises, including jogging, running, mountain climbing, and badminton. A follow-up PFT re- vealed an FVC of 2.24 l (72.7% predicted), FEV1 of 2.23 l (73.6% predicted), and FEV1/FVC ratio of 99% (118% pre- dicted), and she could cover a distance of 555 m in 6MWT. Case 5 A 30-year-old female smoker presented with a 3-year his- tory of recurrent pneumothorax, chest pain, and dyspnea on exercise. Chest CT obtained after the first episode of pneumothorax 3 years ago revealed left pneumothorax with 50% lung compression and bilateral, multiple, thin-walled pulmonary cysts. The patient underwent left pulmonary bullectomy and intrapleural fixation. However, the patient still experienced frequent left or right pneumo- thorax at rest or on minimal activity, although it showed spontaneous resolution. A year ago, the patient was admit- ted to a local hospital with severe pain in the right chest and dyspnea. A chest radiograph revealed right pneumo- thorax with 30% lung compression. She also developed re- current lower abdominal pain accompanied by nausea and vomiting. Abdominal magnetic resonance imaging re- vealed multiple retroperitoneal cystic masses (15.6 × 20.2 cm), a cystic mass at the right uterine attachment (6.2 × 3.6 × 7.0 cm). She underwent retroperitoneal tumor resection, and postoperative pathological examination of the retroperitoneal mass revealed a large number of spindle-shaped cells distributed alongside blood vessels and lymph vessels. The cells showed no obvious hetero- typic features, necrosis, and mitosis. Immunohistochemi- cal examination demonstrated positive expression of SMA, HMB45, ER, PR, and D2–40. The serum VEGF-D Page 4 of 6 Zhou et al. Orphanet Journal of Rare Diseases (2018) 13:168 Page 4 of 6 respiratory failure. In addition, all patients experienced recurrent homolateral or contralateral pneumothorax, which resulted in a poor quality of life and repeated hos- pitalizations. The management of recurrent pneumo- thorax in patients with LAM has been controversial. The latest official guideline from the American Thoracic Society/Japanese Respiratory Society recommends that ipsilateral pleurodesis should be performed when pa- tients with LAM experience their first episode of pneumothorax (conditional recommendation, very low confidence in the estimated effects) [7]. An observational study of 395 patients registered with the LAM Founda- tion [3] revealed that two-thirds of patients presenting with pneumothorax subjected to conservative therapy for the first episode experienced recurrent pneumo- thorax, with recurrence rates of 32% and 27% for pa- tients who underwent surgical management and chemical pleurodesis, respectively, for the first episode. However, approximately 62% of patients with LAM and pneumothorax select oxygen supplementation or CTD for the first episode, while 60% select pleurodesis for the second episode [2]. Case 5 All of our patients received conser- vative treatment such as supplemental oxygen and small-bore chest drain insertion for re-expansion of their lungs after the first episode of pneumothorax, with three of them receiving chemical pleurodesis, surgical pleurod- esis, and/or bullectomy after frequent recurrences. How- ever, all five patients continued to develop recurrent ipsilateral, contralateral, or bilateral pneumothoraces despite conservative or aggressive surgical treatment. The efficacy of conservative treatment and pleurodesis for the prevention of pneumothorax recurrence in pa- tients with LAM remains unsatisfactory. Repeated pneumothorax negatively influences the life quality of patients with LAM and significantly increases their healthcare burden. Therefore, it is necessary for physi- cians to identify an effective drug that can prevent the relapse of pneumothorax and improve the quality of life. level was 2685.88 pg/ml. Considering the possibility of re- current pneumothorax, the patient agreed to begin siroli- mus therapy at 1 mg/day. At the time of writing this report, the patient had been followed up for 5 months without recurrent pneumothorax or abdominal pain. A follow-up PFT revealed an FVC of 3.12 l (93.6% pre- dicted), an FEV1 of 2.35 l (81.4% predicted), an FEV1/ FVC ratio of 75.54% (84.06% predicted), a DLCO of 5.35 mmol/kPa/min (61.4% predicted), and a total lung cap- acity of 4.31 l (93% predicted). The plasma sirolimus levels in the first and third months of treatment were 5.28 and 7.25 ng/ml, respectively. The distance covered in 6MWT was 480 m. Mild mucositis was the only sirolimus- associated adverse effect. ial growth factor-D, PTX pneumothorax, PFT pulmonary function test, 6MWT 6-min walk test, FVC forced vital capacity, FEV1 forced DLCO diffusing capacity for carbon monoxide ular endothelial growth factor-D, PTX pneumothorax, PFT pulmonary function test, 6MWT 6-min walk test, FVC forced vital capacity, FE olume in 1 s, DLCO diffusing capacity for carbon monoxide Discussion In this report, we described the successful prevention of recurrent pneumothorax by sirolimus treatment in five women with LAM. The clinical characteristics of the five LAM patients with recurrent pnuemothoraces are de- scribed in Table 1, and the time course of pneumothorax recurrences is shown in Fig. 1. Spontaneous recurrent ipsilateral or contralateral pneumothorax during rest or minimal activity is one of the most common manifesta- tions, accounting for two-thirds of LAM patients [5]. In a previous study, the majority of patients with LAM ini- tially presented with unilateral pneumothorax, and only 4% initially presented with simultaneous bilateral pneu- mothoraces [3]. After the first episode of pneumothorax, conditions such as Birt–Hogg–Dubé syndrome, pulmon- ary Langerhans cell histiocytosis, pulmonary bullae, lymphoid interstitial pneumonia, Sjögren syndrome, and amyloidosis, all of which are characterized by diffuse, thin-walled cystic lesions in the lungs on HRCT, should be ruled out [6]. All five patients reported here devel- oped pneumothorax before LAM was diagnosed, and chest pain and dyspnea were the most frequent symp- toms, and two of the patients experienced type I Table 1 Clinical data for five patients with lymphangioleiomyomatosis (LAM) and recurrent pneumothorax treated with sirolimus Characteristics Case 1 Case 2 Case 3 Case 4 Case 5 Age (years) 33 23 31 38 30 VEGF-D (pg/ml) 6608 2385 1139 3901 2685.8 PaO2(mmHg) 51 92 96 45.5 98 Surgery No No Yes Yes Yes Chemical pleurodesis No No Yes No No Number of PTX episodes before sirolimus therapy 6 3 6 6 2 Sirolimus concentration (ng/ml) 5–7 4–5 6–10 3–8 5.28a Number of PTX episodes during sirolimus therapy 0 0 0 1 0 Follow-up 6MWT results (m) 480 550 555 510 500 aOnly examined once VEGF-D vascular endothelial growth factor-D, PTX pneumothorax, PFT pulmonary function test, 6MWT 6-min walk test, FVC forced vital capacity, FEV1 forced expiratory volume in 1 s, DLCO diffusing capacity for carbon monoxide aOnly examined once y VEGF-D vascular endothelial growth factor-D, PTX pneumothorax, PFT pulmonary function test, 6MWT 6-min walk test, FVC forced vital capacity, FEV1 forced expiratory volume in 1 s, DLCO diffusing capacity for carbon monoxide Zhou et al. Orphanet Journal of Rare Diseases (2018) 13:168 Page 5 of 6 Fig. 1 Timelines of pneumothorax recurrence in five patients with lymphangioleiomyomatosis (LAM) who were treated with sirolimus. All five patients had recurrent pneumothoraces before sirolimus treatment. The pneumothorax was induced by pregnancy in case 1. Discussion During sirolimus treatment, no patient developed pneumothorax. However, when the patients discontinued sirolimus or exhibited an undetectable trough level due to interaction with anti-tuberculosis drugs, the pneumothorax relapsed Fig. 1 Timelines of pneumothorax recurrence in five patients with lymphangioleiomyomatosis (LAM) who were treated with sirolimus. All five patients had recurrent pneumothoraces before sirolimus treatment. The pneumothorax was induced by pregnancy in case 1. During sirolimus treatment, no patient developed pneumothorax. However, when the patients discontinued sirolimus or exhibited an undetectable trough level due to interaction with anti-tuberculosis drugs, the pneumothorax relapsed The findings from the five cases reported here suggest that sirolimus is a promising and effective drug for the prevention of recurrent pneumothorax in patients with LAM. Pneumothorax did not reappear in any of our pa- tients as long as the plasma sirolimus level remained at 3–10 ng/ml. In addition, improvements in the subjective quality of life and exercise capacity were observed dur- ing sirolimus treatment for all five patients. All patients were able to resume their daily activities and work dur- ing sirolimus therapy. However, the pneumothorax re- curred when sirolimus therapy was discontinued or the plasma sirolimus level was very low. The side effects of sirolimus experienced by these patients included the common ones such as mucositis, irregular menstruation, and delayed wound healing. On the basis of our experi- ence, we would suggest that physicians use supplemental oxygen and CTD to facilitate gas discharge and re-expansion of the lungs in patients with LAM who present with pneumothorax. If these conservative methods are not effective, chemical pleurodesis or surgi- cal intervention should be used. Alternatively, physicians can consider pleurodesis as the first choice of treatment for lung re-expansion. Once the pneumothorax has completely resolved and surgical wounds have healed, sirolimus therapy can be initiated as soon as possible to prevent relapse. It should be noted that sirolimus cannot enhance the absorption of pneumothorax and cannot be used to achieve the remission of existing pneumothorax. The potential benefits of sirolimus treatment for patients with LAM and recurrent pneumothorax include an im- provement in lung function and the quality of life, an in- crease in the exercise capacity, and a decrease in the healthcare burden. On conducting a search of PubMed, we found only one case report where pneumothorax in a patient with LAM was successfully treated with sirolimus [8]. Competing interests p g The authors declare that they have no competing interests. Funding Th The present study was supported by the National Key Clinical Specialist Construction Projects (grant no. 2012–650; Ping Chen); Industrial Research & Development Project, Hunan Province (grant no. 2015–83; Ruoyun Ouyang); Health and Family Planning Commission Project, Hunan Province (grant no. 20180541; Siying Ren); and National Natural Science Foundation of China (grant no. 81700070; Siying Ren). Abbreviations 6MWT 6 i 6MWT: 6-min walk test; AML: Angiomyolipoma; AUC: Area under the curve; Cmax: Maximum concentration; CTD: Chest tube drainage; CYP3A4: Cytochrome P450 3A4 isoenzyme; EMA: Epithelial membrane antigen; FEV1: Forced expiratory volume in 1 s; FVC: Forced vital capacity; H&E: Hematoxylin and eosin; HMB45: Human melanoma black 45; HRCT: High-resolution computed tomography; LAM: Lymphangioleiomyomatosis; m-TOR: Mammalian target of rapamycin; PFT: Pulmonary function test; SpO2: Blood oxygen saturation; TLC: Total lung capacity; TSC: Tuberous sclerosis complex; VATS: Video-assisted thoracoscopic surgery; VEGF-D: Vascular endothelial growth factor-D; SMA: Smooth muscle actin.; ER: Estrogen receptor; PR: Progesterone receptor 8. Verma AK, Joshi A, Mishra AR, Kant S. A. S. pulmonary lymphangioleiomyomatosis presenting as spontaneous pneumothorax treated with sirolimus - a case report. Lung India : official organ of Indian Chest Society. 2018;35:3. 9. Tortorici MA, Matschke K, Korth-Bradley JM, DiLea C, Lasseter KC. The effect of rifampin on the pharmacokinetics of sirolimus in healthy volunteers. Clin pharmacol in drug dev. 2014;3:51–6. 10. Zimmerman JJ. Exposure-response relationships and drug interactions of sirolimus. AAPS J. 2004;6:e28. Discussion We observed that the plasma sirolimus level was re- markably low (0.01 ng/ml) during coadministration of sirolimus at 1 mg/day and anti-tuberculosis therapy in case 4, whereas it ranged between 1 and 3 ng/ml when the patient was receiving sirolimus at 2 mg/day and con- comitant anti-tuberculosis therapy. When the patient discontinued anti-tuberculosis therapy, the level of siroli- mus was > 15 ng/ml, and obvious adverse effects oc- curred in the form of pain and swelling of the ankles and fingers. We found that previous findings have sug- gested a potential interaction between anti-tuberculosis drugs and sirolimus [9, 10]. Therefore, when physicians coadminister sirolimus and anti-tuberculosis drugs, they should individually increase the dose of sirolimus under close monitoring of the plasma levels. In our case series, no patient received talc pleurodesis, considering that previous studies have demonstrated that exposure to talc may increase the risk of lung cancer [11, 12]. Therefore, autologous blood or hypertonic glucose is used as a sclerosing agent for chemical pleurodesis in many hospi- tals in China because of the low medical risk associated with these agents. Page 6 of 6 Zhou et al. Orphanet Journal of Rare Diseases (2018) 13:168 Zhou et al. Orphanet Journal of Rare Diseases (2018) 13:168 Zhou et al. Orphanet Journal of Rare Diseases (2018) 13:168 Zhou et al. Orphanet Journal of Rare Diseases (2018) 13:168 The present case series has some limitations. Because all patients presented to us with pneumothorax, PFT findings prior to sirolimus therapy were unavailable. Therefore, we could not evaluate the efficacy of siroli- mus for improving pulmonary function in these patients. Second, pregnancy may have played a role in pneumo- thorax development in case 1. Therefore, the possibility that pneumothorax may have stopped recurring without sirolimus treatment after pregnancy cannot be com- pletely excluded. Third, we cannot negate the effective- ness of surgical pleurodesis in minimizing recurrences on the basis of our case series. In future, we aim to de- termine whether sirolimus therapy is more effective than surgery, which is an invasive treatment. Finally, we cannot eliminate bias caused by individual differences in effect of sirolimus. Authors’ contributions h d f ll ll h LZ had full access to all the data presented in this article and contributed to data collection and manuscript writing. RO, HL, and PC contributed to the treatment of the patients. RS, PY, TL, and GL participated in the follow-up evaluations. All authors have read and approved the final manuscript. Acknowledgements The authors would like to thank all the personnel at the Department of Respiratory Medicine, The Second Xiangya Hospital, Central South University (Changsha, China), as well as all the patients for their co-operation. 11. Chang CJ, Tu YK, Chen PC, Yang HY. Occupational exposure to talc increases the risk of lung Cancer: a meta-analysis of occupational cohort studies. Can Respir J. 2017;2017:1270608. 12. Kim J, Oak C, Jang T, Jung M, Chun B, Park EK, et al. Lung cancer probably related to talc exposure: a case report. Ind Health. 2013;51:228–31. 12. Kim J, Oak C, Jang T, Jung M, Chun B, Park EK, et al. Lung cancer probably related to talc exposure: a case report. Ind Health. 2013;51:228–31. References 1. McCormack FX. Lymphangioleiomyomatosis. MedGenMed. 2006;8:15. 2. Young LR, Almoosa KF, Pollock-Barziv S, Coutinho M, McCormack FX, Sahn SA. Patient perspectives on management of pneumothorax in lymphangioleiomyomatosis. Chest. 2006;129:1267–73. 3. Almoosa KF, Ryu JH, Mendez J, Huggins JT, Young LR, Sullivan EJ, et al. Management of pneumothorax in lymphangioleiomyomatosis: effects on recurrence and lung transplantation complications. Chest. 2006;129:1274–81 4. McCormack FX, Gupta N, Finlay GR, Young LR, Taveira-DaSilva AM, Glasgow CG, et al. Official American Thoracic Society/Japanese respiratory society clinical practice guidelines: Lymphangioleiomyomatosis diagnosis and management. Am J Respir Crit Care Med. 2016;194:748–61. 5. Ryu JH, Moss J, Beck GJ, Lee JC, Brown KK, Chapman JT, et al. The NHLBI lymphangioleiomyomatosis registry: characteristics of 230 patients at enrollment. Am J Respir Crit Care Med. 2006;173:105–11. 6. Xu KF, Lo BH. Lymphangioleiomyomatosis: differential diagnosis and optimal management. Ther Clin Risk Manag. 2014;10:691–700. 7. Gupta N, Finlay GA, Kotloff RM, Strange C, Wilson KC, Young LR, et al. Lymphangioleiomyomatosis diagnosis and management: high-resolution chest computed tomography, Transbronchial lung biopsy, and pleural disease management an official American Thoracic Society/Japanese respiratory society clinical practice guideline. Am J Respir Crit Care Med. 2017;196:1337–48. 6MWT: 6-min walk test; AML: Angiomyolipoma; AUC: Area under the curve; Cmax: Maximum concentration; CTD: Chest tube drainage; CYP3A4: Cytochrome P450 3A4 isoenzyme; EMA: Epithelial membrane antigen; FEV1: Forced expiratory volume in 1 s; FVC: Forced vital capacity; H&E: Hematoxylin and eosin; HMB45: Human melanoma black 45; HRCT: High-resolution computed tomography; LAM: Lymphangioleiomyomatosis; m-TOR: Mammalian target of rapamycin; PFT: Pulmonary function test; SpO2: Blood oxygen saturation; TLC: Total lung capacity; TSC: Tuberous sclerosis complex; VATS: Video-assisted thoracoscopic surgery; VEGF-D: Vascular endothelial growth factor-D; SMA: Smooth muscle actin.; ER: Estrogen receptor; PR: Progesterone receptor Ethics approval and consent to participate The present study was approved by the Ethics Committee of The Second Xiangya Hospital, Central South University (Changsha, China). Written informed consent was obtained from the patients for publication. Publisher’s Note Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations. Thus far, no controlled clinical studies have been con- ducted for investigation of the possible efficacy of siroli- mus for the prevention of pneumothorax recurrence in patients with LAM. In our case series, all patients re- ceived supplemental oxygen support, repeated CTD, or surgical treatment for lung re-expansion under case of recurrent pneumothorax before sirolimus treatment, al- though these strategies proved dissatisfactory in prevent- ing the relapse of pneumothorax. During treatment with sirolimus, however, no patient developed pneumothorax. In addition, they exhibited a significantly improved qual- ity of life. The findings from our case series suggest a potential therapeutic strategy for the management of re- current pneumothorax in patients with LAM. However, further studies are necessary to clarify our findings. Received: 5 April 2018 Accepted: 14 September 2018 Received: 5 April 2018 Accepted: 14 September 2018 Received: 5 April 2018 Accepted: 14 September 2018 Consent for publication All patients provided written informed consent for publication of clinical data. All patients provided written informed consent for publication of clinical data. All patients provided written informed consent for publication of clinical data. 10. Zimmerman JJ. Exposure-response relationships and drug interactions of sirolimus. AAPS J. 2004;6:e28. Availability of data and materials The datasets used and/or analyzed during the current study are available from the corresponding author on reasonable request.
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Measurement depth effects on the apparent temperature sensitivity of soil respiration in field studies
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Measurement depth effects on the apparent temperature sensitivity of soil respiration in field studies A. Graf, L. Weiherm¨uller, J. A. Huisman, M. Herbst, J. Bauer, and H. Vereecken Forschungszentrum J¨ulich, Agrosphere Institute (ICG-4), Institute for Chemistry and Dynamics of the Geosphere, 52425 J¨ulich, Germany Received: 7 April 2008 – Published in Biogeosciences Discuss.: 6 May 2008 Revised: 18 July 2008 – Accepted: 29 July 2008 – Published: 26 August 2008 ically, the temperature sensitivity of soil respiration is ex- pressed as the Q10 value, i.e. the factor by which respiration is enhanced at a temperature rise of 10 K (Appendix A). Abstract. CO2 efflux at the soil surface is the result of respi- ration in different depths that are subjected to variable tem- peratures at the same time. Therefore, the temperature mea- surement depth affects the apparent temperature sensitivity of field-measured soil respiration. We summarize existing literature evidence on the importance of this effect, and de- scribe a simple model to understand and estimate the mag- nitude of this potential error source for heterotrophic res- piration. The model is tested against field measurements. We discuss the influence of climate (annual and daily tem- perature amplitude), soil properties (vertical distribution of CO2 sources, thermal and gas diffusivity), and measurement schedule (frequency, study duration, and time averaging). Q10 as a commonly used parameter describing the temper- ature sensitivity of soil respiration is taken as an example and computed for different combinations of the above con- ditions. We define conditions and data acquisition and anal- ysis strategies that lead to lower errors in field-based Q10 determination. It was found that commonly used tempera- ture measurement depths are likely to result in an underesti- mation of temperature sensitivity in field experiments. Our results also apply to activation energy as an alternative tem- perature sensitivity parameter. p pp Several restrictions to the significance of the Q10 concept, especially if mistaken as a means to extrapolate soil CO2 losses into a warmer future, have been brought up (David- son and Janssens, 2006; Tuomi et al., 2008). Here, we exam- ine an additional restriction which has received remarkably little attention in literature. In most field studies, column- integrated soil respiration and its sensitivity are quantified by a single temperature measurement, while the total flux is a sum of source terms from various depths, which are ex- posed to different temperature regimes. Because of the at- tenuation and phase shift of temperature fluctuations with in- creasing depth, the apparent Q10 will depend on the temper- ature measurement depth. This possibility was mentioned first by Lloyd and Taylor (1994), but without quantification. Davidson et al. Measurement depth effects on the apparent temperature sensitivity of soil respiration in field studies A. Graf, L. Weiherm¨uller, J. A. Huisman, M. Herbst, J. Bauer, and H. Vereecken Forschungszentrum J¨ulich, Agrosphere Institute (ICG-4), Institute for Chemistry and Dynamics of the Geosphere, 52425 J¨ulich, Germany (1998) predicted that Q10 values would in- crease with temperature measurement depth, and recognized that this complicates comparisons between studies. Recently, several field studies with multiple temperature measurement depths have been published (Xu and Qi, 2001; Hirano et al., 2003; Tang et al., 2003; Gaumont-Guay et al., 2006; Khomik et al., 2006; Shi et al., 2006; Wang et al., 2006; Pavelka et al., 2007). All of them show an increase of apparent Q10 with depth. The same effect has also been identified in model simulations by Hashimoto et al. (2006), and demonstrated exemplary with synthetical data in a recent overview paper by Reichstein and Beer (2008). In a laboratory incubation, Reichstein et al. (2005a) found strongly differing tempera- ture time series between two probe locations within the soil core, and used a multiple regession to consider both locations as sources. Biogeosciences, 5, 1175–1188, 2008 www.biogeosciences.net/5/1175/2008/ © Author(s) 2008. This work is distributed under the Creative Commons Attribution 3.0 License. Biogeosciences A. Graf et al.: Temperature measurement depth effects A. Graf et al.: Temperature measurement depth effects 1176 Table 1. Studies providing multiple Q10 values due to multiple temperature measurement depths. Numbers refer to Fig. 2. reference method land use, climate, altitude frequency period 1 Xu and Qi (2001) chamber forest (young ponderosa pine), ≥1 month−1, Jun 1998–Aug 1999 mediterranean, 1315 ma ≥6 day−1 2 Hirano et al. (2003) profile forest (deciduous broadleaf), 2 h−1 May 2000–Nov 2000 temperate, 70 m 3 Tang et al. (2003) profile savannah (oak-grass), 2 h−1 Jul 2002–Nov 2002 mediterranean, 177 m 4 Perrin et al. (2004) chamber forest (beech), 2 h−1 Jun 2000–Jul 2003 temperate, 495 m 5 Gaumont-Guay et al. (2006) chamber forest (aspen), 2 h−1 Jan 2001–Feb 2001 boreal, ca. 580 m 6 Khomik et al. (2006) chamber forest (mixedwood), 1 month−1 b, Jul 2003–Jul 2005 boreal, ca. 360 m not in winter 7 Shi et al. (2006) chamber farmland (irrigated winter wheat), ≥1 month−1, Sep 1999–Aug 2001 continental temperate, 3688 m ≥2 day−1 c 8 Wang et al. (2006) chamber forest (six different types), 2 week−1 Apr 2004–Oct 2005 continental monsoon, ca. 300 m 9 Pavelka et al. (2007) chamber grassland (9a), forest (9b), 80 min−1 3–9 Aug 2004 (9a) temperate, 850 m (9a), 890 m (9b) 19–24 May 2002 (9b) Table 1. Studies providing multiple Q10 values due to multiple temperature measurement depths. Numbers refer to Fig. 2. results given separately for two sites b morning and afternoon of the measurement day in summer, once per day in transition months c on two days per month in summer, 8 times at some days 2 Methods most appropriate when temperature measurements at mul- tiple depths are available. Tang et al. (2003), Perrin et al. (2004) and Shi et al. (2006) use the temperature measurement depth yielding the highest R2. Gaumont-Guay et al. (2006) suggest that the temperature-efflux curve with the lowest hys- teresis indicates the most appropriate temperature measure- ment depth. Pavelka et al. (2007) also use the maximum R2 method, but additionally performed a crosscorrelation anal- ysis to align each depths temperature time series with the efflux. Since most studies use a single, more or less arbi- trary, temperature measurement depth, the effect of varying temperature measurement depth is often not considered. 1 Introduction Soil respiration is increasingly recognized as a major factor in the global carbon cycle. Due to a rising interest in the feedback between soils and climate change, numerous stud- ies have provided relations between temperature and soil res- piration either obtained in the laboratory or in the field. Typ- To our knowledge, no explanations of the strongly vary- ing shape of these relationships have been provided so far. In addition, it is unclear which Q10 value, if any, is Correspondence to: A. Graf (a.graf@fz-juelich.de) Published by Copernicus Publications on behalf of the European Geosciences Union. Published by Copernicus Publications on behalf of the European Geosciences Union. Published by Copernicus Publications on behalf of the European Geosciences Union. A. Graf et al.: Temperature measurement depth effects A. Graf et al.: Temperature measurement depth effects 1177 Phase shifts t i , Amplitudes A i z i = 1 i = 2 ... 0 1 cm 2 cm ... 50 cm [ ] O Efflux ( t ) t 1 t 2 ... [ ] ... Eq. B3 (stepwise) Eq. B3 Temperature T ( z , t ) z t 1 t 2 ... 0 1 cm 2 cm ... 50 cm [ ] O Respiration S R ( T ) z t 1 t 2 ... 0 1 cm 2 cm ... 50 cm [ ] O Eq. A1 or A2 Soil properties depth z thermal diffusivity D T temperature sensitivity Q 1 0 or E a source strength S R T r e f eff. CO2 diffusivity D C O 2 / θ 0 1 cm 2 cm ... 50 cm variant input Eq.C2 (sub-timesteps) CO2 diffusion? ∑ z SR T F Concentration c ( z , t ) z t 1 t 2 ... 0 1 cm 2 cm ... 50 cm [ ] O Resulting profile z Q 1 0 R 2 0 1 cm 2 cm ... 50 cm output (Eq. A1 or A2)-1 . Study schedule Start: variant input Time step: here, 1h length: variant input Annual Average Temperature T a v g : variant input Temperature climate characterization i period length τ i phase shift & t i Amplitude A i at z r e f 1 1 yr 260 d variant input 2 1 d 15 h variant input 3 0.5 d 1 h variant input 4... other not used in this study Depth of known amplitudes: zref Fig. 1. Overview of the model architecture. Bold outline: Input parameters; doubled outline: Final output. Symbols are explained in the Appendix. Soil properties Efflux ( t ) Fig. 1. Overview of the model architecture. Bold outline: Input parameters; doubled outline: Final output. Symbols are explained in the Appendix. It should be noted that most studies addressed total soil res- piration, without differentiation between heterotrophic and autotrophic respiration. Variations of the diurnal amplitude and day length were not considered. The average temperature was set to the global average (15◦C) in the numerical experiments, and equalled the average measured temperature (12.7◦C) in the model val- idation. Input amplitudes are determined for the uppermost temperature sensor (0.5 cm) in the model validation. A. Graf et al.: Temperature measurement depth effects In the numerical experiments, amplitudes were provided for a ref- erence depth of 5 cm. The reason is that amplitudes in this depth are more similar to air temperature than the soil sur- face temperature. Air temperature amplitudes are globally available and provide a more common reference than surface temperature. 2.1 Literature review We found nine studies where multiple temperature measure- ment depths were used to derive apparent Q10 depth profiles. An overview about the flux methods, site characteristics, and time schedules is given in Table 1. Two of these studies use continuous CO2 concentration profile measurements in the soil to calculate half-hourly sur- face CO2 effluxes validated against chamber measurements. All other studies directly use a closed chamber system to measure CO2 efflux. Many studies use a nested approach with one or more measurement days each month, and two to ten measurements per such day (Table 1). Some studies cover a period of less than a year, whilst others leave out the winter months for operational reasons. The aim of this study is to quantify the error in Q10 de- termination caused by different temperature measurement depths as a function of soil properties, climate, and measure- ment schedule. To this end, we present a simple model and validate it against field measurements of heterotrophic res- piration. We consider this model as a tool that helps with the design of field studies with meaningful temperature mea- surement depths, and with a more appropriate interpretation of existing datasets. We also obtained Q10 values from studies with a single, reported temperature measurement depth (Kim and Verma, 1992; Dugas, 1993; Davidson et al., 1998; Fang et al., 1998; Chen et al., 2002; Law et al., 2002; Borken et al., 2003; Lou et al., 2003; Savage and Davidson, 2003; Yuste et al., 2003; Novick et al., 2004; Takahashi et al., 2004; deForest et al., 2006; Humphreys et al., 2006; Moyano et al., 2008; Tang et al., 2008). Here, either chamber or micrometeoro- logical systems were used to measure soil CO2 efflux. In some studies, air temperature was used to calculate the Q10. Biogeosciences, 5, 1175–1188, 2008 www.biogeosciences.net/5/1175/2008/ Biogeosciences, 5, 1175–1188, 2008 2.2 Model CO2 and water vapour concentration as well as chamber headspace temperature were measured every sec- ond, and the CO2 concentration was corrected for changes in air density and water vapour dilution. The soil respiration was calculated by fitting a linear regression to the corrected CO2 concentrations from 30 s after closing until reopening. time averaged effect of soil moisture at each depth. On the other hand, time average effective thermal diffusivity may vary strongly with depth due to differences in soil properties and water content. To account for this, the analytic solution was applied in discrete depth steps of 1 cm, using the am- plitudes and phase shifts in each layer to calculate those of the next deeper layer (Appendix B). The model is run with a time step of 1 h. Soil respiration is calculated from tempera- ture using the Q10 concept and, as an alternative, also using the Arrhenius concept (see Appendix A). The source strength of respiration at the average temperature is also given as a depth-dependent value. Here, only a relative vertical distri- bution is required because absolute values have no effect on the resulting apparent Q10 profile. g pp Q p If CO2 diffusion time from each depth to the soil sur- face is assumed to be insignificant, the efflux can simply be calculated by integration of the respiration over all depths. However, in analogy to the impact of thermal diffusion on the apparent Q10 discussed above, slow gas diffusion could also affect the apparent Q10. To test this hypothesis, we also included CO2 diffusion in several model runs. As al- ready proposed for heat diffusion, we use an effective dif- fusivity DCO2θ−1 a (Appendix C) invariant in time but verti- cally distributed. Because the concentration profiles are a result of the vertical source distribution and the nonlinear temperature dependence, CO2 diffusion cannot be solved an- alytically. Therefore, we implemented a numerical solution (Appendix C). The CO2 flux between two adjacent layers is now the product of diffusivity and the concentration gra- dient. We assume no vertical exchange between the lowest layer and the underground. At the surface, a constant atmo- spheric CO2 concentration of 16.5×103 µmol m−3 is main- tained. The model considering diffusion requires initializa- tion of the concentration profile. Therefore, the model uses a spin-up period. 2.2 Model The length of the spin-up period is consid- ered adequate when the difference in cumulative efflux be- tween runs with and without diffusion is less than 1%. The thermocouples used to measure soil temperature have 1 mm thick unshielded joints to ensure a quick response, and were installed horizontally at 0.5, 3, 5, and 10 cm depth, 20 cm away from the chamber system. Temperature data were logged every second while the chamber was closed, and averaged. To vertically extend the empirical apparent Q10 profiles, we also use temperature data of pF-meters (Ecotech, Bonn, Germany) in 15, 30, 45, 60, 90 and 120 cm depth, which were logged independently in 1 h intervals. To obtain a uniform dataset, the efflux and temperature measurements were reduced to median hourly CO2 flux and average hourly soil temperature at each measurement depth. In the case of CO2 flux, the median was used because it is less sensitive to outliers and non-normal distributions. In the final data set, only those hours were considered where all flux and temperature measurements were available. Because more than 50% of the hours in December and January could not be considered due to power supply problems, these two months were completely excluded from the dataset. Finally, the modelled time series of efflux at the surface and temperature in each depth are used to simulate the cur- rent practice of field-based Q10 determination. For each depth, regression of log-transformed efflux against temper- ature T is used to compute Q10. To also test fitting of the Arrhenius relation, the inverse of the temperature is plotted against log-transformed respiration. In this case, the result- ing activation energy is converted into a Q10 at the study’s average temperature for comparison (cf. Sanderman et al., 2003). To determine the effective soil thermal diffusivity, we de- rived the annual amplitude in each depth from average daily temperature, and applied the phase equation (e.g. Verhoef et al., 1996) to each pair of successive temperature measure- ment depths. Linear regression provided effective DT values for each depth increment (cf. Appendix B). 2.2 Model The model is based on the concept of thermal diffusion and is implemented in Fortran95. An overview of the model ar- chitecture is given in Fig. 1 and the theory behind the model is described in the Appendix. In brief, a simplified infinite near-surface temperature time series is generated using sev- eral distinct sine waves. The annual and diurnal cycle have a phase shift to correctly reproduce times of maxima and min- ima, assuming that t=0 is new year’s midnight. A further cycle with a period of 12 h, a phase shift of 1 h, and an am- plitude A=Adiurnal/4 was used to mimic the skewness of the daily temperature cycle due to slow cooling during the night. The generated near-surface temperature time series is transferred to other soil depths using an analytical solution of the thermal diffusion equation (Appendix B). This solu- tion does not consider time-variant thermal diffusivity. In- stead, we use an effective thermal diffusivity representing the Biogeosciences, 5, 1175–1188, 2008 www.biogeosciences.net/5/1175/2008/ 1178 A. Graf et al.: Temperature measurement depth effects 06◦27′01′′ E, 104.5 m above sea level). The climate is warm temperate, the soil is an Orthic Luvisol and the texture is silt loam according to the USDA classification. A detailed description of the test site is given by Weiherm¨uller et al. (2007). Organic carbon content was determined in vertical steps of 15 cm. In September 2006, the soil was tilled up to a depth of 15 cm and power harrowed. Bare field con- ditions were maintained by a repetition of this treatment in April 2007, several applications of glyphosate, and manual weed control at the efflux measurement plot. Historically, the field was annually ploughed to a depth of 30 cm, and the crop rotation was sugar beet – winter wheat. From 15 October 2006 to 24 April 2007 only one CO2 flux system was used (closing interval every 30 min). From 24 April to 14 October 2007, four identical chambers with a separation of 20 cm were operated with the Li8100 multiplexer system (closing interval 15 min for each chamber). The soil flux chambers were placed on soil collars of 20 cm in diameter and a height of 7 cm, which were inserted 5 cm into the soil. The system was closed for two minutes for each flux mea- surement. Biogeosciences, 5, 1175–1188, 2008 2.3 Field measurements An automated soil CO2 flux chamber system (Li-8100, Li- Cor Inc., Lincoln, Nebraska, USA) was operated with four type T thermocouple thermometers at the FLOWatch project test site Selhausen of the Forschungszentrum J¨ulich. The test site is located in the river Rur catchment (50◦52′09′′ N, www.biogeosciences.net/5/1175/2008/ Biogeosciences, 5, 1175–1188, 2008 A. Graf et al.: Temperature measurement depth effects 1179 1 8 7 1 3 2 6 5 4 9a 9b -50 -40 -30 -20 -10 0 0 1 2 3 4 5 6 7 8 9 10 11 12 Q 10 z (cm) single depth study multiple depth study own measurements and model fit Fig. 2. Empirical apparent Q10 as a function of temperature measurement depth z. Numbers refer to the study bibliography given in Table 1, single depth references are listed in the methods section. Depths >0 denote air temperature (height not to scale). A. Graf et al.: Temperature measurement depth effects 1179 6 Fig. 2. Empirical apparent Q10 as a function of temperature measurement depth z. Numbers refer to the study bibliography given in Table 1, single depth references are listed in the methods section. Depths >0 denote air temperature (height not to scale). 3 Results the shortest datset, shows an increase only up to a depth of 5 (grassland) or 10 (forest) cm, followed by a decrease for greater depths. Note that Pavelka et al. (2007) also provide Q10 values based on a synchronization of each depth’s tem- perature time series with efflux by crosscorrelation. In this case, the apparent Q10 increases exponentially with depth, reaching an extremely high Q10 value of 799 in 30 cm depth (grassland). 3.1 Literature and own field measurements Figure 2 shows apparent Q10 values as a function of depth from this and other studies. An increase of apparent Q10 with depth can be seen in all studies, but with a strongly vari- able slope. The highest apparent value (Gaumont-Guay et al., 2006, Q10=150 in a temperature measurement depth of 50 cm) is not shown for scaling reasons. This profile is based on measurements taken during two winter months. The sec- ond highest value was found by Khomik et al. (2006), also at 50 cm, in long-term measurements excluding winter months, but including snow cover situations in spring, and capturing the diurnal cycle in summer (Table 1). Of the remaining pro- files, our own measurements and those by Shi et al. (2006), both from farmland and capturing the diurnal cycle, increase strongest with depth. The remaining profiles exhibit compar- atively low, but still substantial apparent Q10 increases with depth. In the study by Perrin et al. (2004), the air temperature 9 m above ground level is included and yields a considerably lower value than the three soil temperature series, which are close to each other both in measurement depth and in ap- parent Q10. The study by Pavelka et al. (2007), which used The values from studies using a single temperature mea- surement depth also show Q10 values increasing with depth. No single-depth study was found with a temperature mea- surement depth deeper than 10 cm. 3.2 Model validation Figure 2 also shows the best model fit (RMSE of 0.16) ob- tained by fitting a depth invariant input Q10, while assum- ing a model domain of 50 cm, a homogeneous carbon source distribution within the plough layer (0 to 30 cm depth) and a carbon-free subsoil and neglecting CO2 diffusion. The depth-invariant input Q10 yielding this optimum fit was 5.9. We did not consider depth-dependent values of the in- put Q10 in order to avoid over-fitting. It should be noted that the results were not substantially different when using Biogeosciences, 5, 1175–1188, 2008 www.biogeosciences.net/5/1175/2008/ 1180 A. Graf et al.: Temperature measurement depth effects days), the apparent Q10 behaves highly irregular. For mea- surement periods longer than a year, the apparent Q10 is sta- ble throughout the first 20 cm depth. It should be noted that we assumed that inter-annual variations in average tempera- ture can be neglected here. All other plots are based on a 1 year measurement period. Table 2. Results of model validation under different settings. Table 2. Results of model validation under different settings. source domain optimal RMSE profile depth input Q10 1 (>−30 cm), 0 (<−30 cm) 50 cm 5.9 0.16 1 (>−30 cm), 0 (<−30 cm) 120 cm 5.3 0.80 measured Corg 50 cm 6.2 0.21 measured Corg 120 cm 5.9 1.20 Changing the thermal diffusivity of the soil (one value for all depths, Fig. 3c), yields an irregular behaviour for values less than 0.1 mm2 s−1. Above this threshold, possible ap- parent Q10 errors, as well as the distance between the Q10 obtained from the highest R2 and the input Q10, decreases with increasing diffusivity. We used a thermal diffusivity of 0.5 mm2 s−1 in all other plots. The influence of CO2 transport is neglected in all simula- tions except for those presented in Fig. 3d. Considering gas diffusion leads to an offset in apparent Q10 in the first 20 cm compared to cases where diffusion is not considered, but the extent of this offset is less than 2% for effective diffusivities greater than 0.5 mm2 s−1. Below 0.5 mm2 s−1, this offset in- creases sharply and the depth of the highest R2 can be found below rather than above the depth regaining the input Q10. an Arrhenius relationship instead of the Q10 concept (not shown). This also applies to all results shown below. 3.3 Numerical experiments The validated model was used to study the effect of several factors on the apparent Q10 profile. Figure 3 shows appar- ent Q10 values as a function of both temperature measure- ment depth and each factor considered in this study. The depth where the R2 between soil respiration and temperature is highest is indicated with R2 max. The input Q10 used to gen- erate all plots is 2.5. In the case of a homogenous respiring A-horizon of vary- ing thickness above a non-respiring subsoil (Fig. 3a), the input Q10 is obtained at about half the depth of the respir- ing layer. The highest R2, however, is found at a shallower depth. The difference between the optimal measurement depth and the depth with the highest correlation increases with the thickness of the respiring layer (up to 10 cm for a 50 cm thick respiring layer). The apparent Q10 at the depth of highest R2, however, does not differ more than 5% from the input value. Typical measurement depths used in field studies (0 to 10 cm) result in errors ranging from −30 to +10% de- pending on the depth of the respiring layer. The apparent Q10 values shown in Fig. 3a vary from less than 1.8 to more than 3, which is about the range of most reported values (Raich and Schlesinger, 1992), although the input Q10 was constant at 2.5. In all other plots (Fig. 3b to f), we assumed a respiring layer thickness of 30 cm. All experiments shown so far used a depth-invariant in- put sensitivity. Figure 4 shows the apparent Q10 profiles re- sulting from a linear change of input Q10 between the sur- face and the bottom of the respiring layer. As example min- imum and maximum values, we use 2.5 (as in the previ- ous experiments), and 4.6. These values have been identi- fied in a study by Boone et al. (1998) for heterotrophic res- piration excluding the rhizosphere and root-related respira- tion, respectively. They may thus represent a vertical gra- dient between 0 and 100% root contribution to total respi- ration, or a change in the quality of organic carbon pools. The experiment was performed using the same standard set- tings as Fig. 3, and was repeated for a thicker respiring layer of 120 cm. 3.2 Model validation The model fit was less good when using the measured, linearly interpolated Corg profile as a proxy of the source strength distribution. Increasing the length of the model do- main to 120 cm also decreased model quality (Table 2). The optimal input Q10 values found for these different conditions vary from 5.3 to 6.2, and would have been directly measured in depths between 10 cm and 20 cm. Considering CO2 dif- fusion either led to negligible differences or higher errors, depending on diffusivity (also see next sections). In Fig. 3e, the annual temperature amplitude was varied from 0 to 20 K (twice the value used in the other model runs). For annual amplitudes below the diurnal amplitude of 5 K, the resulting profile is highly irregular with a local maximum. In addition, the temperature sensitivity is under- estimated throughout most of the modelling domain. Fig- ure 3f shows the effect of varying diurnal amplitudes. High diurnal amplitudes increase the errors made within the first 20 cm, and lead to an underestimation of temperature sensi- tivity when using shallow temperature sensors. Zero diurnal temperature amplitudes yield an almost linear apparent Q10 profile and a close proximity of the depth with the highest R2 and the input Q10. Note that in our numerical experiments, this behaviour could be reproduced using daily averages of temperature and CO2 efflux. Averaging efflux before or af- ter log-transformation only resulted in negligible differences (1Q10<0.01). Simulating only one measurement per day at a fixed time also yields similar results, but with a small verti- cal offset of about 3 cm depending on the time of day of the measurement. A. Graf et al.: Temperature measurement depth effects A. Graf et al.: Temperature measurement depth effects 0.5 1 1.5 2 Measurement Period Length (yr) depth of maximum R² depth regaining input Q d) a) b) c) f) -0 -10 -20 -30 -40 -50 z (cm) 10 20 30 40 50 Thickness of respiring layer z (cm) R 2 max SR -0 -10 -20 -30 -40 -50 z (cm) 0.1 0.2 0.3 0.4 0.5 0.6 0.7 0.8 0.9 1 Thermal Diffusivity D (mm s ) R 2 max T 2 -1 1 2 3 4 5 Effective CO Diffusivity D (mm s ) R 2 max 2 CO2 a -1 2 -1 R 2 max 0 1 2 3 4 5 6 7 8 9 10 Daily Amplitude Ad (K) R 2 max -0 -10 -20 -30 -40 -50 z (cm) 0 5 10 15 20 Annual Amplitude Ay (K) R 2 max e) 0 1.1 1.3 1.5 1.7 1.9 2.1 2.3 2.5 2.7 2.9 3.1 3.3 3.5 Q10 app θ 10 other Q isoline 10 2.5 2 R²max quantity of varied parameter in all other figures ig. 3. Apparent Q10 resulting from simulated hourly flux measurements as a function of temperature measurement depth z and: hickness of a homogenous respiring layer, (b) measurement period, (c) thermal diffusivity (one for all depths), (d) effective CO2 diffusiv e) annual temperature amplitude, (f) diurnal temperature amplitude. DCO2 is infinite in all but (d), input Q10 is 2.5. 3.3 Numerical experiments Descending and ascending profiles yield almost The impact of the length of the measurement period is il- lustrated in Fig. 3b. For short periods (less than about 180 Biogeosciences, 5, 1175–1188, 2008 www.biogeosciences.net/5/1175/2008/ 1181 www.biogeosciences.net/5/1175/2008/ A. Graf et al.: Temperature measurement depth effects At the same time, it yields very high values if the synchronization procedure sug- gested by the authors is applied. This procedure eliminates any phase shift, by gas diffusion or inadequate temperature measurement depth. The second highest Q10 increase with depth (Khomik et al., 2006) originates from a study captur- ing the daily temperature cycle in summer, with additional less frequent measurements in spring and autumn, and no measurements in winter. The steep profiles found by Shi et al. (2006) and by ourselves were obtained for agricultural soils. A high and dense vegatation canopy, which is absent in these sites, attenuates the diurnal cycle more than the an- nual one. The diurnal cycle will be attenuated stronger with depth than the annual one. Therefore in agricultural soils, with a higher diurnal amplitude at the surface, larger changes of temperature with depth are detectable. The lowest increase of Q10 with depth was found in a study where measurements of the diurnal cycle of CO2 efflux were avoided (Wang et al., 2006). The air temperature in proximity to the forest canopy included by Perrin et al. (2004) is supposed to have a higher diurnal amplitude than forest soil temperatures and conse- quently yields a lower apparent Q10. -50 -40 -30 -20 -10 0 1.7 2 2.3 2.6 2.9 3.2 3.5 3.8 4.1 Q 10 z (cm) 3.49 constant 3.55 constant 2.5 at surface, 4.6 at bottom 4.6 at surface, 2.5 at bottom 120 cm respiring layer 30 cm respiring layer 30 cm respiring layer Fig. 4. Apparent Q10 resulting from simulated hourly flux measure- ments as a function of temperature measurement depth z for differ- ent linear input Q10 profiles (increasing and decreasing between 2.5 and 4.6) and thicknesses (30 cm and 120 cm) of the respiring layer. identical results, differing mainly in a Q10 offset of up to 0.21 in the upper 50 cm. The same is true for a depth-invariant Q10 that is the arithmetic (higher value) or geometric aver- age of the above gradient in discrete 1 cm steps. Figure 4 also shows the general effect of deep carbon (here, 120 cm) contributing the same reference temperature respiration as shallow horizons. In agreement with the trend in Fig. 3a, the depth regaining the input Q10 moves further downwards. All shown measurement depths now underesti- mate temperature sensitivity. A. Graf et al.: Temperature measurement depth effects www.biogeosciences.net/5/1175/2008/ Biogeosciences, 5, 1175–1188, 20 0.5 1 1.5 2 Measurement Period Length (yr) R 2 max a) -0 -10 -20 -30 -40 -50 z (cm) 10 20 30 40 50 Thickness of respiring layer z (cm) R 2 max SR Th l Diff i i D ( ) 2 1 b) d) b) 1 2 3 4 5 Effective CO Diffusivity D (mm s ) R 2 max 2 CO2 a -1 2 -1 D il A lit d Ad (K) 0 1.1 1.3 1.5 1.7 1.9 2.1 2.3 2.5 2.7 2.9 3.1 3.3 3.5 Q10 app θ a) c) 50 -0 -10 -20 -30 -40 -50 z (cm) 0.1 0.2 0.3 0.4 0.5 0.6 0.7 0.8 0.9 1 Thermal Diffusivity D (mm s ) R 2 max T 2 -1 Annual Amplitude Ay (K) Thermal Diffusivity D (mm s ) T 2 -1 depth of maximum R² depth regaining input Q d) c) f) -50 0 1 2 3 4 5 6 7 8 9 10 Daily Amplitude Ad (K) R 2 max -0 -10 -20 -30 -40 -50 z (cm) 0 5 10 15 20 Annual Amplitude Ay (K) R 2 max e) 0 10 other Q isoline 10 2.5 2 R²max quantity of varied parameter in all other figures d) 0 f) Fig. 3. Apparent Q10 resulting from simulated hourly flux measurements as a function of temperature measurement depth z and: (a) thickness of a homogenous respiring layer, (b) measurement period, (c) thermal diffusivity (one for all depths), (d) effective CO2 diffusivity, (e) annual temperature amplitude, (f) diurnal temperature amplitude. DCO2 is infinite in all but (d), input Q10 is 2.5. www.biogeosciences.net/5/1175/2008/ Biogeosciences, 5, 1175–1188, 2008 A. Graf et al.: Temperature measurement depth effects 1182 et al., 2006) is based on those authors’ deepest temperature measurements and a short study period of two months. The amplitude of the diurnal temperature is strongly attenuated at that depth, and the amplitude of the annual cycle is not fully sampled because of the short measurement period. There- fore, CO2 efflux was correlated to temperature values with small amplitude and high phase shift, which can result in very high or very low apparent Q10 values. The even shorter dataset by Pavelka et al. (2007) gives an example of such very low apparent sensitivities at great depths. A. Graf et al.: Temperature measurement depth effects A combination of this situation with a short measurement period or low annual amplitude (not shown) aggravates this underestimation, making local Q10 minima of less than 1 more probable. As a further ex- ample of combinatory effects, a low thermal conductivity of 0.1 mm2 s−1 was combined with a varying measurement pe- riod. In this case, both very high Q10 above 10 and values of less than 1 can be found in greater measurement depths, depending on the actual measurement period. Vegetation does not only affect the temperature regime of the soil, but also respiration itself. All studies discussed here except for our own bare soil measurements include both het- erotrophic and root respiration. Hanson et al. (2000) review various studies on the contribution of root to total soil res- piration. Depending on ecosystem, they find that 10 to 90% of total respiration stems from roots with an average con- tribution of about 50%. Root respiration is related not only to those environmental variables that are known to influence heterotrophic respiration, but also to aboveground plant pro- ductivity and thus to radiation (Tang et al., 2005). This cor- relation is subject to a lag between several hours and several days (Moyano et al., 2008), due to the time taken by phloem transport from leaves to roots. The similarity between this lagged response to radiation and soil temperature at a certain depth, which may also be considered a lagged response to ra- diation, could cause confusion. In the interpretation of mixed soil respiration, too much of temporal variability might be at- tributed to either soil temperature or aboveground radiation, depending on the normalisation procedure and the available temperature measurement depth. The possibility that conclu- sions about the lagged response to radiation of root respira- tion might be erroneous due to the temperature measurement depth effect, was recently discussed by Bahn et al. (2008). 4.3 Numerical experiments When the vertical source strength distribution consists of a homogenous respiring layer above a non-respiring sub-soil, the best depth to place a single temperature sensor is the cen- tre of the respiring layer (Fig. 3a). Although such a distribu- tion is not unrealistic for our field reference dataset, it may be not fulfilled in non-agricultural soils, especially in the pres- ence of litter layers. As an alternative method to determine the most appropriate depth, Tang et al. (2003), Perrin et al. (2004), Shi et al. (2006) and Pavelka et al. (2007) suggested the maximum R2 criterion. Although our numerical exper- iments show that this is not exactly correct, it is a good ap- proximation in most conditions. However, both the R2 crite- rion and the centre placement fail in extreme conditions, as illustrated in Fig. 3b to e. It was not necessary to consider CO2 diffusion to model the apparent Q10 variation with depth for our field experi- ment. This fits well with the results of the numerical exper- iments discussed in the next section, which showed that for most diffusivities observed in the field the impact should be low (Fig. 3d; Tang et al., 2003; Werner et al., 2004). Nev- ertheless, a general recommendation to neglect CO2 trans- port should not be made based on the results of a single field study. The difference between the depth of highest R2 and the depth regaining the input Q10 is a result of the combined ef- fect of amplitude attenuation and phase shift of temperature waves. For an infinitely thin respiring layer, the R2 is high- est for a temperature measurement within this layer. This measurement will also provide the correct Q10. At other depths, the R2 is lower due to phase shifts in the temperature time series. For thicker respiring layers, efflux at the sur- face integrates over CO2 production time series with differ- ent delays and amplitudes. If the delay is considered in isola- tion, the highest R2 would occur in the middle of the respir- ing layer. However, the apparent Q10 would underestimate the temperature sensitivity for all depths because the averag- ing of several phase-shifted temperature waves results in a smaller range of temperature values. When amplitude atten- uation and phase shifts are both considered, deeper parts of the respiring layer show a smaller variance in both, tempera- ture and their contribution to column respiration. 4.2 Model validation The model application to the field data demonstrates that the model is able to describe the temperature sensitivity varia- tion with depth. The remaining uncertainty of about ±10% occurs when considering deeper layers, and their carbon con- tent (Table 2). We attribute this to two main causes. First, temperature measurement errors become increasingly signif- icant deeper in the soil, where amplitudes are smaller. Such errors are not simulated by the model. However, tempera- ture sensitivity of soil respiration is rarely determined from temperature sensors installed in large depths. Second, there is considerable uncertainty in the source strength distribu- tion. Organic carbon content includes accumulated stable carbon pools, the fraction of which can be depth-dependent itself. The field data were best described when neglecting the organic carbon content found below the A-horizon. This seems to indicate that deeper carbon is less involved in respi- ration activity, which is in good agreement with the general assumption that carbon pools in deeper horizons are more stable (cf. Fierer et al., 2003). The increasing uncertainty with depth also implies that field measurements of CO2 ef- flux at the soil surface are not suited to derive the temperature sensitivity of deep buried carbon, which has been associated with higher temperature sensitivities by some (Knorr et al., 2005; Davidson and Janssens, 2006). Recently, an additional sensitivity of deep carbon decomposition to fresh carbon sup- ply has been suggested (Fontaine et al., 2007). Our study shows that although a true increase of Q10 with depth may be present, it should not be confused with the temperature measurement depth dependence of the apparent Q10 (also see Fig. 4). A. Graf et al.: Temperature measurement depth effects ture (Davidson et al., 1998), may cause errors of similar mag- nitude in field-based Q10 determination. In most climates, this correlation is negative, resulting in a further underes- timation if CO2 production is moisture-limited. However, Davidson et al. (2006) also demonstrated cases where the availability of other substrates may lead to an overestimation, e.g. oxygen influenced by moisture. Such other confounding factors may be responsible for the high Q10 we found after correcting for measurement depth errors. As already stated, the model does not consider root respiration. Therefore, tem- perature measurement depth errors in soils with a consider- able contribution of roots can only be described correctly if other factors controlling root-related respiration do not co- vary with temperature. This problem was already discussed in the previous section. Also, roots may contribute to the va- riety of temperature sensitivities found in a single site or even depth. Boone et al. (1998) found strongly differing temper- ature responses between heterotrophic and root-related (in- cluding exudation-driven heterotrophic) respiration (cf. next section). 4.1 Literature and own field measurements The variability of the Q10 dependence on temperature mea- surement depth underlines the need for a methodology that allows comparison of temperature sensitivities determined in field experiments. Various explanations for the variability of apparent Q10 profiles can be deduced from our modelling ex- ercise. The highest reported apparent Q10 (Gaumont-Guay www.biogeosciences.net/5/1175/2008/ Biogeosciences, 5, 1175–1188, 2008 www.biogeosciences.net/5/1175/2008/ 1183 Biogeosciences, 5, 1175–1188, 2008 4.3 Numerical experiments Therefore, It is noteworthy that the measurement depths that would have yielded a Q10 value in the range of the optimal input Q10 of the model, are below 10 cm, while all single mea- surement depths found in our literature study are above that depth. When modelling a whole year, the apparent Q10 dif- fers less than 7% in the upper 30 cm and up to 16% in 50 cm depth. Given the ability of the model to describe the data measured during 10 months correctly, we assume that a full one-year dataset of hourly respiration would have shown the same deviation. Finally, it should be mentioned that the model only con- siders the pure confounding factor temperature measurement depth. Depending on the site characteristics, other confound- ing effects, such as correlation of temperature with soil mois- Biogeosciences, 5, 1175–1188, 2008 www.biogeosciences.net/5/1175/2008/ A. Graf et al.: Temperature measurement depth effects 1184 the depth of highest R2 is shifted upwards. At the same time, the lower temperature amplitudes in these depths counteract the underestimation of the apparent Q10. Strictly spoken, the temperature measurement depth regaining the input Q10 is not a “correct” depth, but a depth where positive and nega- tive errors are balanced. low, field-based determination of accurate Q10 values is dif- ficult. Typically, the temperature sensitivity will be under- estimated. Continental and boreal climates with high annual amplitudes potentially allow an accurate determination of the Q10 when the measurement period is long and continuous. This may be difficult in case of harsh winter conditions, or be complicated by the thermal properties of a snow cover (see above). The depth that regains the input Q10 will not always be within the respiring layer, as illustrated by Fig. 3b. In this figure, the length of the measurement period was varied. The model qualitatively confirms that extremely high appar- ent temperature sensitivities for greater measurement depths, such as those found by Gaumont-Guay et al. (2006) and Khomik et al. (2006), can be caused by incomplete repre- sentation of the annual cycle. For a more quantitative as- sessment, too little is known especially on the varying thick- ness and thermal properties of the snow cover, which was an important feature in both studies. Organic topsoils were reported from both studies, which may have had a very low thermal diffusivity. According to our model, this can lead to highly irregular apparent Q10 profiles. 4.3 Numerical experiments The fact that measure- ment periods of less than half a year can result in high Q10 errors is also relevant to studies separating the study period into seasons to capture plant phenological effects on temper- ature sensitivity (e.g. Xu and Qi, 2001; Yuste et al., 2004; deForest et al., 2006). The model also demonstrates that for even shorter measurement periods, such as the one analyzed by Pavelka et al. (2007), great measurement depths can yield very low apparent sensitivities. The numerical experiment on diurnal amplitude (Fig. 3f) is of particular interest because the positive effects of low diurnal amplitudes can be approximated by daily averaging of efflux and temperature time series. A similar reduction in daily amplitude can be obtained by measurements at a fixed time of day, but it remains to be examined whether this alter- native is more susceptible to varying day lengths and ampli- tudes throughout the year. The experiment on depth-variant input Q10 confirms what has been discussed during the model validation: Surface ef- flux measurements are poorly suited to assess the vertical variability of temperature sensitivity. The Q10 derived from such a field study, even if the correct measurement depth was chosen, only represents an effective mean of the potentially different sensitivities of soil horizons. It remains to be tested whether additional CO2 concentration measurements in var- ious depths, or varying vertical profiles of soil moisture, can solve this ambiguity problem. In general, our analyses indicate that a temperature mea- surement depth within the upper 10 cm, as commonly used in field studies, is likely to result in an underestimation of tem- perature sensitivity, at least in the absence of a litter layer. According to the latest IPCC report (Solomon et al., 2007), most models used to estimate the biochemical feedback of land surfaces to climate change assume a soil respiration Q10 close to 2. It is noteworthy that this assumption is based on averaging not only laboratory but also field studies (Solomon et al., 2007), e.g. those compiled by Raich and Schlesinger (1992). These models predict a global effective sensitivity of heterotrophic respiration of 6.2% per K warming. How- ever, a larger Q10 of 2.5 would be well within the uncertainty range identified in this study. Biogeosciences, 5, 1175–1188, 2008 A. Graf et al.: Temperature measurement depth effects small. In some cases, the aim of determining a temperature sensitivity is empirical modelling, e.g. for gap-filling, rather than inter-site comparison or process-based modelling. In this case, error minimization by choosing the depth of maxi- mum R2 may be advantageous. 5 Conclusions We described the development, validation, and application of a simple model to explain and estimate the errors in tem- perature sensitivity determination related to the temperature measurement depth. We chose the widely used Q10 concept as an example, but the alternative activation energy concept provides almost identical results. Appendix A Depending on study conditions, the vertical profile of the apparent Q10 may range from fairly regular to highly irreg- ular. The latter case can include local minima and maxima, decoupling of the depth of correct Q10 from the depth of highest R2, and cases where the obtained Q10 is incorrect for all conventional temperature measurement depths. In these cases, only laboratory incubation experiments directly can yield correct temperature sensitivity relations, although these experiments are not free of errors and assumptions either. An alternative possibility would be to inversely estimate the Q10 using numerical models of CO2 production, CO2 transport and heat transport applied to field data. This approach has recently been used to estimate soil physical properties and CO2 source strength (Herbst et al., 2008; Novak, 2007; Wei- herm¨uller et al., 2008) and could be extended to Q10 estima- tion in future. Temperature sensitivity functions Two methods are most commonly used to relate temperature and respiration. The first is an empirical exponential rela- tionship suggested by van t’Hoff (e.g. Yuste et al., 2004): SR = SRTrefe ln Q10 10 (T −Tref) (A1) (A1) where SR is soil respiration (µmol m−2 s−1), T is tempera- ture (K) and Tref is an arbitrary reference temperature with a know respiration rate SRTref. Q10 is the rate by which respi- ration changes with a temperature change of 10 K. The Q10 is a commonly used parameter to report the temperature sen- sitivity of soil respiration. The second relationship is more physically based and uses activation energy considerations introduced by Arrhenius (e.g. Lloyd and Taylor, 1994): In many field studies, however, the detailed input data re- quired to drive mechanistic CO2 models are not available. In such cases, the model presented here, and some basic climate and soil data, may help reducing errors in temperature sen- sitivity analysis. Nevertheless, validation has shown that an uncertainty remains due to the choice of input parameters. Also, analyses of additional field data sets to test whether the simplifications made within the model are justified would be desirable. Ideally, a model to asses the effect of temperature measurement depth, as of other confounding factors, would accompany each field study. However, careful interpretation of the results presented here may provide some general con- clusions which kind of conditions are favourable to reduce measurement depth errors. These are: SR = SRTrefe Ea R T Tref (T −Tref) (A2) (A2) Here, Ea is the activation energy (J mol−1), and R=8.314 J mol−1 K−1 is the universal gas constant. Further temperature sensitivity functions are summarised by K¨atterer et al. (1998), Bauer et al. (2008) and Tuomi et al. (2008). The temperature sensitivity coefficients of these methods (Q10 and Ea) are not equivalent. For typical temperature and respiration ranges, a Q10 value derived from Eq. (A2) based on Ea decreases slowly with increasing temperature, whereas Q10 is a constant in Eq. (A1). A slow Q10 decrease with increasing temperature has been reported in a range of field and laboratory studies (e.g. Kirschbaum, 2006; Shi et al., 2006). Large differences between both relations only occur in the case of extrapolation, especially into warmer conditions. However, it has been questioned whether extrapolation can be used for future feedback prediction (Davidson and Janssens, 2006). 4.3 Numerical experiments This would increase global sen- sitivity by about one third in each model, which is the same order of magnitude as the standard deviation among the mod- els. The models give an average absolute sensitivity of land surfaces to climate change of −79 Gt sequestered carbon per K warming, although this rate is highly variable between the models (±45 GtC K−1). An additional uncertainty of one third due to an unknown primary temperature sensitivity of respiration, divided by the time span over which such a 1 K increase is assumed (40 to 50 years depending on scenario), would be equal to 7 to 9% of the current annual emissions from fossil fuel burning and cement production. Variation of the soil thermal diffusivity (Fig. 3c) confirms the expectation that accurate field-based Q10 measurements are more likely when temperature waves propagate rapidly into the ground. According to Zmarsly et al. (2002), most soils have thermal diffusivities ranging between 0.1 (dry or- ganic) and 0.75 mm2 s−1 (wet sand). Therefore, the irregular behaviour of the apparent Q10 for very low diffusivities is not relevant in most ecosystems. y Effective CO2 diffusivities can cover a much larger range. A compilation of Werner et al. (2004) based on 81 stud- ies shows that DCO2θ−1 a can range from 0.09 to more than 12 mm2 s−1. Despite this large range, our numerical experi- ment shows that the influence of diffusion on apparent Q10 would be negligible for all but the three lowest values sum- marized by Werner et al. (2004). It is interesting that for such small diffusivities, the depth of highest R2 can drop below the depth regaining the input Q10. We attribute this to the fact that the time series of surface efflux is now delayed compared to the temperature time series in those depths where most of the CO2 is produced. Consequently, efflux correlates better with deeper temperature time series. This is no indication of a causal relationship, as the CO2 produced in these depths is delayed even stronger before reaching the surface. An evaluation of the effect of annual temperature ampli- tude (Fig. 3e) is relevant to avoid systematic errors when tem- perature sensitivities from different climatic zones are com- pared. Close to the equator where the annual amplitude is www.biogeosciences.net/5/1175/2008/ Biogeosciences, 5, 1175–1188, 2008 1185 www.biogeosciences.net/5/1175/2008/ (B1) (B1) The dynamics of CO2 in soil air is described by: ∂c ∂t = τθaDa ∂2ca ∂z2 + SR (C1) where t is time (s) and z is depth (m). Thermal diffusivity is a function of thermal conductivity λ (W m−1 K−1), heat capacity c (J kg−1 K−1), and bulk density ρ (kg m−3). The typical order of magnitude of soil thermal diffusivity is 10−7 to 10−6 m2 s−1 (Zmarsly et al., 2002). To transfer a soil tem- perature time series to another depth, it is often represented by a series of sine waves (van Wijk, 1963; Verhoef et al., 1996; Heusinkveld et al., 2004; Graf et al., 2008): (C1) where c is the total volumetric concentration of CO2, ca is the concentration in soil air, Da is the diffusivity of CO2 in air (m2 s−1), θa (dimensionless) is the soil air content, and τ is a dimensionless tortuosity factor. Da, the soil air con- tent, tortuosity and other factors such as transport through soil water and pressure turbulence can be combined into an effective diffusivity (Simunek and Suarez, 1993; Hirano et al., 2003; Tang et al., 2003; Takle et al., 2004). In this study, we use a wide range of field-determined effective diffusivi- ties reviewed by Werner et al. (2004). To solve Eq. (C1), we use an explicit time discretization: T = T + n X i=1 Ai sin 2π(t + 1ti) τi (B2) (B2) τi where T denotes the average temperature (K), Ai is the tem- perature amplitude (K), τi is the period length (s), and 1ti the phase shift (here in units of time and therefore included in the bracketed term) of the sine wave indexed i. When thermal diffusivity is constant with depth and time, there is an analytical solution to Eqs. (B1) and (B2) (van Wijk, 1963) that predicts temperature in any other depth (Heusinkveld et al., 2004; Graf et al., 2008): where T denotes the average temperature (K), Ai is the tem- perature amplitude (K), τi is the period length (s), and 1ti the phase shift (here in units of time and therefore included in the bracketed term) of the sine wave indexed i. When thermal diffusivity is constant with depth and time, there is an analytical solution to Eqs. Theory of soil temperature profiles Soil surface temperature changes are mainly induced by the radiation balance at the soil surface and exchange of sensi- ble and latent heat between the soil and the atmosphere. The variation in soil surface temperature propagates into deeper layers. In the absence of transport of sensible and latent heat in the soil gas phase (Weber et al., 2007), this process is con- trolled by the soil thermal diffusivity DT (m2 s−1): (B1) (B1) and (B2) (van Wijk, 1963) that predicts temperature in any other depth (Heusinkveld et al., 2004; Graf et al., 2008): c(t + 1t, z) = c(t, z) + 1t(SR(t, z) +DCO2(z −1 21z) c(t,z−1z)−c(t,z) θa1z2 −DCO2(z + 1 21z) c(t,z)−c(t,z+1z) θa1z2 ) (C2) (C2) T = T + n X i=1 Ai exp  1z r π DT τi  sin 2π(t + 1ti + 1zτi 2π q π DT τi ) τi (B3) By defining DCO2 in planes 0.5 1z above and below all other depth-dependent input data, we achieve mass-consistency. The maximum value of the time-step for a stable solution is 1t<0.51z2D−1 CO2θa. (B3) Acknowledgements. We gratefully acknowledge field assistance by Rainer Harms, partial funding of A. Graf’s postdoctoral appointment by the “Impuls- und Vernetzungsfonds” of the Helmholtz Association, financial support by the Helmholtz-funded FLOWatch project and by the SFB/TR 32 “Patterns in Soil- Vegetation-Atmosphere Systems: Monitoring, Modelling, and Data Assimilation” funded by the Deutsche Forschungsgemeinschaft (DFG), and helpful comments by all participants of the BGD open discussion related to this publication. where 1z is the difference between the actual and the refer- ence depth. Stepwise application of Eq. (B3) allows to treat thermal diffusivities that change along a vertical profile (cf. meth- ods section). However, it should be noted that for such an effective thermal diffusivity in soils with a vertical change of thermal properties, the simple relation between λ, c and DT given in Eq. (B1) is no longer valid. Nassar and Horton (1989) describe a method yielding an effective diffusivity for numerical forward modelling. If no temperature time series from different depths in the field are available, but λ and c as determined in laboratory or estimated from literature sig- nificantly vary with depth, both approaches do not work. In this case, either a numerical model treating storage and dif- fusion separately has to be used, or a more complex analyt- ical model considering the vertical profile of both λ and c. Edited by: J. Leifeld Edited by: J. Leifeld Edited by: J. Leifeld A. Graf et al.: Temperature measurement depth effects A. Graf et al.: Temperature measurement depth effects Such models for specific, regular vertical profiles have been summarized and tested by Massman (1993). An even more general approach, which allows for any profile of thermal properties to be resolved in discrete stpes of e.g. 1 cm and is therefore well compatible with our model, has been sug- gested by Karam (2000). Theory of gas diffusion ∂T ∂t = DT ∂2T ∂z2 = λ ρc ∂2T ∂z2 (B1) Biogeosciences, 5, 1175–1188, 2008 Temperature sensitivity functions One reason for this is that different soil carbon pools may have different temperature sensitivities. A long-term temperature change would then change the pool ratios and, consequently, the effective temperature sensitivity of the soil. It is still under debate whether these effects are of a measurable and relevant magnitude or not (Fang et al., 2005; Knorr et al., 2005; Reichstein et al., 2005b; Conen et al., 2006; Larinova et al., 2007). Here, Ea is the activation energy (J mol−1), and R=8.314 J mol−1 K−1 is the universal gas constant. Further temperature sensitivity functions are summarised by K¨atterer et al. (1998), Bauer et al. (2008) and Tuomi et al. (2008). The temperature sensitivity coefficients of these methods (Q10 and Ea) are not equivalent. For typical temperature and respiration ranges, a Q10 value derived from Eq. (A2) based on Ea decreases slowly with increasing temperature, whereas Q10 is a constant in Eq. (A1). A slow Q10 decrease with increasing temperature has been reported in a range of field and laboratory studies (e.g. Kirschbaum, 2006; Shi et al., 2006). Large differences between both relations only occur in the case of extrapolation, especially into warmer conditions. However, it has been questioned whether extrapolation can be used for future feedback prediction (Davidson and Janssens, 2006). One reason for this is that different soil carbon pools may have different temperature sensitivities. A long-term temperature change would then change the pool ratios and, consequently, the effective temperature sensitivity of the soil. It is still under debate whether these effects are of a measurable and relevant magnitude or not (Fang et al., 2005; Knorr et al., 2005; Reichstein et al., 2005b; Conen et al., 2006; Larinova et al., 2007). – a thin and easily distinguished horizon of respiration ac- tivity, – a high thermal and CO2 diffusivity of the soil, – a high annual temperature amplitude, – a measurement period of one year or more, – daily averaging of measurements before fitting the tem- perature sensitivity function. Note that the last two conditions may be in conflict with other confounding factors that require short measurement pe- riods, such as moisture or phenology-dependent Q10 mea- surements. In the conditions identified above, the bias introduced by the maximum R2 depth method used by some authors will be Biogeosciences, 5, 1175–1188, 2008 www.biogeosciences.net/5/1175/2008/ 1186 A. Graf et al.: Temperature measurement depth effects A. Graf et al.: Temperature measurement depth effects and gas diffusivity: implications for field studies through sensi- tivity analyses, J. Forest Res.-JPN, 11, 41–50, 2006. Bauer, J., Herbst, M., Huisman, J. A., Weiherm¨uller, L., and Vereecken, H.: Sensitivity of simulated soil heterotrophic res- piration to temperature and moisture reduction functions, Geo- derma, 145, 17–27, 2008. Herbst, M., Hellebrand, H. J., Bauer, J., Huisman, J. A., Simunek, J., Weiherm¨uller, L., Graf, A., Vanderborght, J., and Vereecken, H.: Multiyear heterotrophic soil respiration: evaluation of a cou- pled CO2 transport and carbon turnover model, Ecol. Model., 214, 271–283, 2008. Boone, R. D., Nadelhoffer, K. J., Canary, J. D., and Kaye, J. P.: Roots exert a strong influence on the temperature sensitivity of soil respiration, Nature, 396, 570–572, 1998. Borken, W., Davidson, E. A., Savage, K., Gaudinski, J., and Trum- bore, S. E.: Drying and wetting effects on carbon dioxide release from organic horizons, Soil Sci. Soc. Am. J., 67, 1888–1896, 2003. Heusinkveld, B. G., Jacobs, A. F. G., Holtslag, A. A. M., and Berkowicz, S. M.: Surface energy balance closure in an arid re- gion. Role of soil heat flux, Agr. Forest Meteorol., 122, 21–37, 2004. Chen, X. Y., Eamus, D., and Hutley, L. B.: Seasonal patterns of soil carbon dioxide efflux from a wet-dry tropical savanna of northern Australia, Aust. J. Bot., 50, 43–51, 2002. Hirano, T., Kim, H., and Tanaka, Y.: Long-term half-hourly mea- surement of soil CO2 concentration and soil respiration in a tem- perate deciduous forest, J. Geophys. Res. Atmos., 108(D20), 4631, doi:10.1029/2003JD003766, 2003. Conen, F., Leifeld, J., Seth, B., and Alewell, C.: Warming min- eralises young and old carbon equally, Biogeosciences, 3, 515– 519, 2006, http://www.biogeosciences.net/3/515/2006/. Humphreys, E. R., Black, T. A., Morgenstern, K., Cai, T. B., Drewitt, G. B., Nesi, Z., and Trofymow, J. A.: Carbon dioxide fluxes in coastal Douglas-fir stands at different stages of develop- ment after clearcut harvesting, Agr. Forest Meteorol., 140, 6–22, 2006. Davidson, E. A. and Janssens, I. A.: Temperature sensitivity of soil carbon decomposition and feedbacks to climate change, Nature, 440, 165–173, 2006. Karam, M. A.: A thermal wave approach for heat transfer in a nonuniform soil, Soil Sci. Soc. Am. J., 64, 1219–1225, 2000. Davidson, E. A., Belk, E., and Boone, R. D.: Soil water content and temperature as independent or confounded factors controlling soil respiration in a temperate mixed hardwood forest, Global Change Biol., 4, 217–227, 1998. A. Graf et al.: Temperature measurement depth effects K¨atterer, T., Reichstein, M., Andr´en, O., and Lomander, A.: Tem- perature dependence of organic matter decomposition: a critical review using literature data analyzed with different models, Biol. Fert. Soils, 27, 258–262, 1998. Davidson, E. A., Janssens, I. A., and Luo, Y.: On the variability of respiration in terrestrial ecosystems: moving beyond Q10, Glob. Change Biol., 12, 154–164, 2006. Khomik, M., Arain, M. A., and McCaughey, J. H.: Temporal and spatial variability of soil respiration in a boreal mixedwood for- est, Agr. Forest Meteorol., 140, 244–256, 2006. deForest, J. L., Noormets, A., McNulty, S. G., Sun, G., Tenney, G., and Chen, J.: Phenophases alter the soil respiration-temperature relationship in an oak-dominated forest, Int. J. Biometeorol., 51, 135–144, 2006. Kim, J. and Verma, S. B.: Soil CO2 flux in a Minnesota peatland, Biogeochemistry, 18, 37–51, 1992. Kirschbaum, M. U. F.: The temperature dependence of organic- matter decomposition – still a topic of debate, Soil Biol. Biochem., 38, 2510–2518, 2006. Dugas, W. A.: Micrometeorological and Chamber Measurements of CO2 Flux from Bare Soil, Agr. Forest Meteorol., 67, 115–128, 1993. Knorr, W., Prentice, I. C., House, J. I., and Holland, E. A.: Long- term sensitivity of soil carbon turnover to warming, Nature, 433, 298–301, 2005. Fang, C., Moncrieff, J. B., Gholz, H. L., and Clark, K. L.: Soil CO2 efflux and its spatial variation in a Florida slash pine plantation, Plant Soil, 205, 135–146, 1998. Larinova, A. A., Yevdokimov, I. V., and Bykhovets, S. S.: Tempera- ture response of soil respiration is dependent on concentration of readily decomposable C, Biogeosciences, 4, 1073–1081, 2007, http://www.biogeosciences.net/4/1073/2007/. Fang, C. M., Smith, P., Moncrieff, J. B., and Smith, J. U.: Simi- lar response of labile and resistant soil organic matter pools to changes in temperature, Nature, 433, 57–59, 2005. Fierer, N., Allen, A. S., Schimel, J. P., and Holden, P.: Controls on microbial CO2 production: a comparison of surface and subsur- face horizons, Global Change Biol., 9, 1322–1332, 2003. Law, B. E., Falge, E., Gu, L., et al.: Environmental controls over carbon dioxide and water vapor exchange of terrestrial vegeta- tion, Agr. Forest Meteorol., 113, 97–120, 2002. Fontaine, S., Barot, S., Barre, P., Bdioui, N., Mary, B., and Rumpel, C.: Stability of organic carbon in deep soil layers controlled by fresh carbon supply, Nature, 450, 277–281, 2007. Lloyd, J. and Taylor, J. A. On the temperature-dependence of soil respiration, Funct. Ecol., 8, 315–323, 1994. Lou, Y. References Bahn, M., Rodeghiero, M., Anderson-Dunn, M., et al.: Soil respira- tion in European grasslands in relation to climate and assimilate supply. Ecosystems, in press, 2008. Biogeosciences, 5, 1175–1188, 2008 www.biogeosciences.net/5/1175/2008/ A. Graf et al.: Temperature measurement depth effects 1187 A. Graf et al.: Temperature measurement depth effects Novak, M. D.: Determination of soil carbon dioxide source-density profiles by inversion from soil-profile gas concentrations and sur- face flux density for diffusion-dominated transport, Agr. Forest Meteorol., 146, 189–204, 2007. Tang, J. W., Baldocchi, D. D., Qi, Y., and Xu, L. K.: Assessing soil CO2 efflux using continuous measurements of CO2 profiles in soils with small solid-state sensors, Agr. Forest Meteorol., 118, 207–220, 2003. Tang, J. W., Baldocchi, D., and Xu, L. K.: Tree photosynthesis modulates soil respiration on a diurnal time scale, Global Change Biol., 11, 1298–1304, 2005. Novick, K. A., Stoy, P. C., Katul, G. G., Ellsworth, D. S., Siqueira, M. B. S., Juang, J., and Oren, R.: Carbon dioxide and water vapor exchange in a warm temperate grassland, Oecologia, 138, 259–274, 2004. Tang, J., Bolstad, P. V., Desai, A. R., Martin, J. G., Cook, B. D., Davis, K. J., and Carey, E. V.: Ecosystem respiration and its com- ponents in an old-growth forest in the Great lakes region of the United States, Agric. For. Meteorol., 148, 171–185, 2008. Pavelka, M., Acosta, M., Marek, M. V., Kutsch, W., and Janous, D.: Dependence of the Q10 values on the depth of the soil tempera- ture measuring point, Plant Soil, 292, 171–179, 2007. Tuomi, M., Vanhala, P., Karhu, K., Fritze, H., and Liski, J.: Het- erotrophic soil respiration - Comparison of different models de- scribing its temperature dependence, Ecol. Model., 211, 182– 190, 2008. Perrin, D., Laitat, E., Yernaux, M., and Aubinet, M.: Modelling the response of forest soil respiration fluxes to the main climatic variables, Biotechnol. Agron. Soc. Environ., 8, 15–25, 2004. Raich, J. W. and Schlesinger, W. H.: The global carbon dioxide flux in soil respiration and its relationship to vegetation and climate, Tellus, 44(B), 81–99, 1992. van Wijk, W. R. (Ed.): Physics of Plant Environment, North Hol- land, Amsterdam, The Netherlands, p. 133–134, 1963. Reichstein, M. and Beer, C.: Soil respiration across scales: The importance of a model-data integration framework for data inter- pretation, J. Plant Nutr. Soil Sci., 171, 1–11, 2008. Verhoef, A., van den Hurk, B. J. J. M., Jacobs, A. F. G., and Heusinkveld, B. G.: Thermal soil properties for vineyard (EFEDA-I) and savanna (HAPEX-Sahel) sites, Agr. Forest Me- teorol., 78, 1–18, 1996. Reichstein, M., Subke, J. A., Angeli, A. C., and Tenhunen, J. A. Graf et al.: Temperature measurement depth effects D.: Does the temperature sensitivity of decomposition of soil organic matter depend upon water content, soil horizon, or incubation time?, Glob. Change Biol., 11, 1754–1767, 2005a. Wang, C., Yang, J., and Zhang, Q.: Soil respiration in six temperate forests in China, Global Change Biol., 12, 2103–2114, 2006. Weber, S., Graf, A., and Heusinkveld, B. G.: Accuracy of soil heat flux plate measurements in coarse substrates – Field measure- ments versus a laboratory test, Theor. Appl. Climatol., 89, 109– 114, 2007. Reichstein, M., K¨atterer, T., Andr`en, O., Ciais, P., Schulze, E. D., Cramer, W., Papale, D., and Valentini, R.: Temperature sensi- tivity of decomposition in relation to soil organic matter pools: critique and outlook, Biogeosciences, 2, 317–321, 2005b, http://www.biogeosciences.net/2/317/2005/. Weiherm¨uller, L., Huisman, J. A., Lambot, S., Herbst, M., and Vereecken, H.: Mapping the spatial variation of soil water con- tent at the field scale with different ground penetrating radar tech- niques, J. Hydrol., 340, 205–216, 2007. Sanderman, J., Amundson, R. G., and Baldocchi, D. D.: Applica- tion of eddy covariance measurements to the temperature depen- dence of soil organic matter mean residence time, Global Bio- geochem. Cy., 17, 1061, doi:10.1029/2001GB001833, 2003. Weiherm¨uller, L., Huisman, J. A., Graf, A., Herbst, M., and Se- quaris, J.-M.: Multistep outflow experiments for the simultane- ous determination of soil physical and CO2 production parame- ters, Vadose Zone J., in press, 2008. Savage, K. E. and Davidson, E. A.: A comparison of manual and automated systems for soil CO2 flux measurements: trade-offs between spatial and temporal resolution, J. Exp. Bot., 54, 891– 899, 2003. Werner, D., Grathwohl, P., and H¨ohener, P.: Review of field meth- ods for the determination of the tortuosity and effective gas-phase diffusivity in the vadose zone, Vadose Zone J., 3, 1240–1248, 2004. Shi, P. L., Zhang, X. Z., Zhong, Z. M., and Ouyang, H.: Diurnal and seasonal variability of soil CO2 efflux in a cropland ecosystem on the Tibetan Plateau, Agr. Forest Meteorol., 137, 220–233, 2006. Xu, M. and Qi, Y.: Spatial and seasonal variations of Q10 deter- mined by soil respiration measurements at a Sierra Nevada for- est, Global Biogeochem. Cy., 15, 687–696, 2001. Simunek, J. and Suarez, D. L.: Modeling of carbon-dioxide trans- port and production in soil. 1. Model development, Water Resour. Res., 29, 487–497, 1993. Yuste, J. C., Janssens, I. A. Graf et al.: Temperature measurement depth effects S., Li, Z. P., and Zhang, T. L.: Soil CO2 flux in relation to dissolved organic carbon, soil temperature and moisture in a subtropical arable soil of China, J. Environ. Sci.-China, 15, 715– 720, 2003. Gaumont-Guay, D., Black, T. A., Griffis, T. J., Barr, A. G., Jassal, R. S., and Nesic, Z.: Interpreting the dependence of soil respiration on soil temperature and water content in a boreal aspen stand, Agr. Forest Meteorol., 140, 220–235, 2006. Massman, W. J.: Periodic temperature variations in an inhomoge- neous soil: a comparison of exact and analytical expressions, Soil Sci., 155, 331–338, 1993. Graf, A., Kuttler, W., and Werner, J.: Mulching as means to exploit dewfall for arid agriculture?, Atmos. Res., 87, 369–376, 2008. Moyano, F. E., Kutsch, W. L., and Rebmann, C.: Soil respiration fluxes in relation to photosynthetic activity in broad-leaf and needle-leaf forest stands, Agr. Forest Meteorol., 148, 135–143, 2008. Hanson, P. J., Edwards, N. T., Garten, C. T., and Andrews, J. A.: Separating root and soil microbial contributions to soil respira- tion: A review of methods and observations, Biogeochemistry, 48, 115–146, 2000. Nassar, I. N. and Horton, R.: Determination of the apparent thermal diffusivity of a nonuniform soil, Soil Sci., 147, 238–244, 1989. Hashimoto, S. and Komatsu, H.: Relationships between soil CO2 concentration and CO2 production, temperature, water content, Biogeosciences, 5, 1175–1188, 2008 www.biogeosciences.net/5/1175/2008/ 1188 A. Graf et al.: Temperature measurement depth effects A., Carrara, A., and Ceulemans, R.: Inter- active effects of temperature and precipitation on soil respiration in a temperate maritime forest, Tree Physiol., 23, 1263–1270, 2003. Solomon, S., Qin, D., Manning, M., et al. (Eds.): Climate Change 2007: The Physical Science Basis, Contribution of Working Group I to the Fourth Assessment Report of the Intergovern- mental Panel on Climate Change Cambridge University Press, Cambridge, United Kingdom and New York, NY, USA, 501– 539, 2007. Yuste, J. C., Janssens, I. A., Carrara, A., and Ceulemans, R.: Annual Q(10) of soil respiration reflects plant phenological patterns as well as temperature sensitivity, Global Change Biol., 10, 161– 169, 2004. Takahashi, A., Hiyama, T., Takahashi, H. A., and Fukushima, Y.: Analytical estimation of the vertical distribution of CO2 produc- tion within soil: application to a Japanese temperate forest, Agr. Forest Meteorol., 126, 223–235, 2004. Zmarsly, E., Kuttler, W., and Pethe, H.: Meteorologisch- klimatologisches Grundwissen, Ulmer, Stuttgart, Germany, p.167, 2002. Takle, E. S., Massmann, W. J., Brandle, J. R., et al.: Influence of high-frequency ambient pressure pumping on carbon dioxide ef- flux from soil, Agr. Forest Meteorol., 124, 193–206, 2004. Biogeosciences, 5, 1175–1188, 2008 www.biogeosciences.net/5/1175/2008/