go_id
string
go_numeric_id
int64
name
string
namespace
string
definition
string
definition_xrefs
list
comment
string
synonyms
list
synonym_scopes
list
alt_ids
list
subsets
list
xrefs
list
is_a_ids
list
relationship_edges
list
relationship_types
list
relationship_target_ids
list
parent_ids
list
intersection_of
list
union_of
list
disjoint_from
list
replaced_by
list
consider
list
property_values
list
created_by
string
creation_date
string
is_obsolete
bool
in_go_basic
bool
split_bucket
int64
GO:0000138
138
Golgi trans cisterna
cellular_component
The Golgi cisterna farthest from the endoplasmic reticulum; the final processing compartment through which proteins pass before exiting the Golgi apparatus; the compartment in which N-linked protein glycosylation is completed.
[ "ISBN:0815316194" ]
null
[ "late Golgi" ]
[ "RELATED" ]
[]
[]
[]
[ "GO:0031985" ]
[]
[]
[]
[ "GO:0031985" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
7
GO:0000139
139
Golgi membrane
cellular_component
The lipid bilayer surrounding any of the compartments of the Golgi apparatus.
[ "GOC:mah" ]
null
[ "Golgi apparatus membrane" ]
[ "EXACT" ]
[]
[]
[]
[ "GO:0098588" ]
[ "part_of GO:0005794" ]
[ "part_of" ]
[ "GO:0005794" ]
[ "GO:0005794", "GO:0098588" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
8
GO:0000140
140
acylglycerone-phosphate reductase (NADP+) activity
molecular_function
Catalysis of the reaction: 1-hexadecanoyl-sn-glycero-3-phosphate + NADP+ = 1-hexadecanoylglycerone 3-phosphate + H+ + NADPH.
[ "RHEA:17341" ]
null
[ "1-acyldihydroxyacetone-phosphate reductase activity", "1-palmitoylglycerol-3-phosphate:NADP+ oxidoreductase activity", "acyldihydroxyacetone phosphate reductase activity", "palmitoyl dihydroxyacetone phosphate reductase activity", "palmitoyl-dihydroxyacetone-phosphate reductase activity", "palmitoyldihyd...
[ "EXACT", "RELATED", "RELATED", "RELATED", "RELATED", "RELATED" ]
[]
[]
[ "EC:1.1.1.101", "MetaCyc:ACYLGLYCERONE-PHOSPHATE-REDUCTASE-RXN", "MetaCyc:RXN-15046", "Reactome:R-HSA-75883 \"DHRS7B reduces GO3P to HXDG3P\"", "RHEA:17341", "RHEA:36175" ]
[ "GO:0016616" ]
[]
[]
[]
[ "GO:0016616" ]
[]
[]
[]
[]
[]
[ "skos:exactMatch EC:1.1.1.101", "skos:exactMatch MetaCyc:ACYLGLYCERONE-PHOSPHATE-REDUCTASE-RXN", "skos:exactMatch RHEA:17341", "skos:narrowMatch MetaCyc:RXN-15046", "skos:narrowMatch RHEA:36175", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/28070\" xsd:anyURI", "term_tracker_i...
null
null
false
true
3
GO:0000142
142
cellular bud neck contractile ring
cellular_component
A contractile ring, i.e. a cytoskeletal structure composed of actin filaments and myosin, that forms beneath the plasma membrane at the mother-bud neck in mitotic cells that divide by budding in preparation for completing cytokinesis. An example of this structure is found in Saccharomyces cerevisiae.
[ "GOC:krc", "PMID:16009555" ]
null
[ "neck ring" ]
[ "EXACT" ]
[]
[]
[]
[ "GO:0110085" ]
[ "part_of GO:0005935" ]
[ "part_of" ]
[ "GO:0005935" ]
[ "GO:0005935", "GO:0110085" ]
[ "GO:0005826", "part_of GO:0005935" ]
[]
[]
[]
[]
[]
null
null
false
true
3
GO:0000144
144
cellular bud neck septin ring
cellular_component
A ring-shaped structure that forms at the site of cytokinesis in the bud neck of a budding cell; composed of members of the conserved family of filament forming proteins called septins as well as septin-associated proteins. In S. cerevisiae, this structure forms at the time of bud emergence and the septins show a high ...
[ "GOC:krc", "PMID:16009555" ]
null
[]
[]
[]
[]
[]
[ "GO:0000399", "GO:0005940", "GO:0032161" ]
[]
[]
[]
[ "GO:0000399", "GO:0005940", "GO:0032161" ]
[ "GO:0005940", "part_of GO:0005935" ]
[]
[]
[]
[]
[]
null
null
false
true
9
GO:0000145
145
exocyst
cellular_component
A protein complex peripherally associated with the plasma membrane that determines where vesicles dock and fuse. At least eight complex components are conserved between yeast and mammals.
[ "GOC:cilia", "PMID:15292201", "PMID:27243008", "PMID:9700152" ]
null
[ "exocyst complex", "Sec6/8 complex" ]
[ "EXACT", "EXACT" ]
[]
[]
[ "Wikipedia:Exocyst" ]
[ "GO:0099023" ]
[ "part_of GO:0005938" ]
[ "part_of" ]
[ "GO:0005938" ]
[ "GO:0005938", "GO:0099023" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
5
GO:0000146
146
microfilament motor activity
molecular_function
A motor activity that generates movement along a microfilament, driven by ATP hydrolysis.
[ "PMID:29716949" ]
null
[ "actin filament motor activity", "actin-activated ATPase activity", "actin-dependent ATPase activity", "actin-filament motor activity", "muscle motor activity", "myosin ATPase activity" ]
[ "EXACT", "EXACT", "EXACT", "EXACT", "NARROW", "RELATED" ]
[ "GO:0030898" ]
[]
[ "EC:5.6.1.8", "Reactome:R-HSA-2316352 \"SLC2A4 (GLUT4) vesicle translocates and docks at the plasma membrane\"", "Reactome:R-HSA-432237 \"Translocation of Aquaporin-2 from intracellular vesicles to the apical plasma membrane\"", "Reactome:R-HSA-9023171 \"Insulin secretory granule translocates across the corti...
[ "GO:0003774", "GO:0120544", "GO:0140657" ]
[]
[]
[]
[ "GO:0003774", "GO:0120544", "GO:0140657" ]
[]
[]
[]
[]
[]
[ "skos:exactMatch EC:5.6.1.8", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/20877\" xsd:anyURI", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/29690\" xsd:anyURI", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/30193\" xsd:anyURI", ...
null
null
false
true
8
GO:0000147
147
actin cortical patch assembly
biological_process
Assembly of an actin cortical patch, a discrete actin-containing structure found at the plasma membrane of fungal cells.
[ "GOC:mah" ]
null
[]
[]
[]
[]
[]
[ "GO:0022607", "GO:0030866", "GO:0044396" ]
[]
[]
[]
[ "GO:0022607", "GO:0030866", "GO:0044396" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
2
GO:0000148
148
1,3-beta-D-glucan synthase complex
cellular_component
A protein complex that catalyzes the transfer of a glucose group from UDP-glucose to a (1->3)-beta-D-glucan chain.
[ "PMID:7983071" ]
null
[ "(1->3)-beta-glucan synthase complex", "1,3-beta-glucan synthase complex" ]
[ "EXACT", "EXACT" ]
[]
[]
[]
[ "GO:1990234" ]
[]
[]
[]
[ "GO:1990234" ]
[]
[]
[]
[]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/28315\" xsd:anyURI" ]
null
null
false
true
2
GO:0000149
149
SNARE binding
molecular_function
Binding to a SNARE (soluble N-ethylmaleimide-sensitive factor attached protein receptor) protein.
[ "PMID:12642621" ]
null
[ "SNAP receptor binding" ]
[ "EXACT" ]
[]
[ "goslim_chembl" ]
[ "Reactome:R-HSA-210426 \"Glutamate synaptic vesicle docking and priming\"", "Reactome:R-HSA-210430 \"Release of L-Glutamate at the synapse\"", "Reactome:R-HSA-265166 \"Exocytosis of Insulin\"", "Reactome:R-HSA-372505 \"Acetylcholine synaptic vesicle docking and priming\"", "Reactome:R-HSA-372529 \"Release o...
[ "GO:0005515" ]
[]
[]
[]
[ "GO:0005515" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
5
GO:0000150
150
DNA strand exchange activity
molecular_function
Catalysis of the identification and base-pairing of homologous sequences between single-stranded DNA and double-stranded DNA.
[ "GOC:elh" ]
Note that this term represents activities that do not break or form phosphodiester bonds, and is therefore not a parent of 'site-specific recombinase activity ; GO:0009009'.
[ "RecA-family recombinase activity", "recombinase activity", "strand exchange activity", "strand transferase" ]
[ "RELATED", "EXACT", "RELATED", "NARROW" ]
[]
[ "goslim_metagenomics" ]
[ "Reactome:R-HSA-912458 \"Formation of meiotic heteroduplex\"" ]
[ "GO:0140097" ]
[ "part_of GO:0006310" ]
[ "part_of" ]
[ "GO:0006310" ]
[ "GO:0006310", "GO:0140097" ]
[]
[]
[]
[]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/20964\" xsd:anyURI" ]
null
null
false
true
8
GO:0000151
151
ubiquitin ligase complex
cellular_component
A protein complex that includes a ubiquitin-protein ligase and enables ubiquitin protein ligase activity. The complex also contains other proteins that may confer substrate specificity on the complex.
[ "GOC:jh2", "PMID:9529603" ]
null
[]
[]
[]
[ "goslim_pir" ]
[]
[ "GO:0140535", "GO:1990234" ]
[]
[]
[]
[ "GO:0140535", "GO:1990234" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
1
GO:0000152
152
nuclear ubiquitin ligase complex
cellular_component
A ubiquitin ligase complex found in the nucleus.
[ "GOC:mah" ]
null
[]
[]
[]
[]
[]
[ "GO:0000151", "GO:0140513" ]
[]
[]
[]
[ "GO:0000151", "GO:0140513" ]
[ "GO:0000151", "part_of GO:0005634" ]
[]
[]
[]
[]
[]
null
null
false
true
4
GO:0000153
153
cytoplasmic ubiquitin ligase complex
cellular_component
A ubiquitin ligase complex found in the cytoplasm.
[ "GOC:mah" ]
null
[]
[]
[]
[]
[]
[ "GO:0000151" ]
[ "part_of GO:0005737" ]
[ "part_of" ]
[ "GO:0005737" ]
[ "GO:0000151", "GO:0005737" ]
[ "GO:0000151", "part_of GO:0005737" ]
[]
[]
[]
[]
[]
null
null
false
true
2
GO:0000154
154
rRNA modification
biological_process
The covalent alteration of one or more nucleotides within an rRNA molecule to produce an rRNA molecule with a sequence that differs from that coded genetically.
[ "GOC:curators" ]
The term 'RNA editing' (GO:0016547) was merged into 'RNA modification' (GO:0009451) on the basis of statements in the preface of Modification and Editing of RNA (ISBN:1555811337) that there is no clear distinction between modification and editing. Parallel changes were made for substrate (e.g. tRNA, rRNA, etc.) specifi...
[ "rRNA editing" ]
[ "NARROW" ]
[ "GO:0016548" ]
[]
[ "Reactome:R-HSA-6790901 \"rRNA modification in the nucleus and cytosol\"", "Reactome:R-HSA-6793080 \"rRNA modification in the mitochondrion\"" ]
[ "GO:0006364", "GO:0009451" ]
[]
[]
[]
[ "GO:0006364", "GO:0009451" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
2
GO:0000155
155
phosphorelay sensor kinase activity
molecular_function
Catalysis of the phosphorylation of a histidine residue in response to detection of an extracellular signal such as a chemical ligand or change in environment, to initiate a change in cell state or activity. The two-component sensor is a histidine kinase that autophosphorylates a histidine residue in its active site. T...
[ "GOC:bf", "GOC:mcc", "PMID:10966457", "PMID:20223701", "PMID:31386843", "PMID:9191038" ]
null
[ "two-component sensor activity", "two-component sensor molecule", "two-component system sensor activity" ]
[ "NARROW", "NARROW", "NARROW" ]
[]
[]
[]
[ "GO:0004673", "GO:0140299" ]
[ "part_of GO:0000160" ]
[ "part_of" ]
[ "GO:0000160" ]
[ "GO:0000160", "GO:0004673", "GO:0140299" ]
[]
[]
[]
[]
[]
[ "skos:broadMatch EC:2.7.13.3", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/28061\" xsd:anyURI", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/28520\" xsd:anyURI" ]
null
null
false
true
9
GO:0000156
156
phosphorelay response regulator activity
molecular_function
Responds to a phosphorelay sensor to initiate a change in cell state or activity. The activity of the response regulator is regulated by transfer of a phosphate from a histidine residue in the sensor, to an aspartate residue in the response regulator. Many but not all response regulators act as transcriptional regulato...
[ "GOC:bf", "PMID:10966457", "PMID:11842140" ]
null
[ "two-component response regulator activity" ]
[ "NARROW" ]
[]
[]
[]
[ "GO:0060089" ]
[ "part_of GO:0000160" ]
[ "part_of" ]
[ "GO:0000160" ]
[ "GO:0000160", "GO:0060089" ]
[]
[]
[]
[]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/15611\" xsd:anyURI" ]
null
null
false
true
9
GO:0000159
159
protein phosphatase type 2A complex
cellular_component
A protein complex that has protein serine/threonine phosphatase activity that is polycation-stimulated (PCS), being directly stimulated by protamine, polylysine, or histone H1; it constitutes a subclass of several enzymes activated by different histones and polylysine, and consists of catalytic, scaffolding, and regula...
[ "GOC:mah", "ISBN:0198547684", "PMID:17245430" ]
null
[ "PP2A complex", "PP2A-pi", "PP2a-protector", "protein phosphatase 2 complex" ]
[ "EXACT", "NARROW", "NARROW", "RELATED" ]
[]
[]
[]
[ "GO:0008287" ]
[]
[]
[]
[ "GO:0008287" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
3
GO:0000161
161
obsolete osmosensory signaling MAPK cascade
biological_process
OBSOLETE. A MAPK cascade that starts with the activation of a Ssk2/Win1 family MAP3K, which activates a Pbs2/Wis1 family MAP2K, resulting in the activation of a Hog1/Sty1 family MAPK. Hog1 then translocates from the cytosol into the nucleus where it affects the expression of a large number of genes. This cascade is act...
[ "PMID:17604854", "PMID:32794416", "PMID:9561267" ]
This term was obsoleted because it represents the same process as p38MAPK cascade ; GO:0038066.
[ "activation of MAPK activity involved in osmosensory signaling pathway", "activation of MAPKK activity during osmolarity sensing", "activation of MAPKK activity involved in osmosensory signaling pathway", "activation of MAPKKK activity during osmolarity sensing", "activation of MAPKKK activity involved in o...
[ "NARROW", "NARROW", "NARROW", "NARROW", "NARROW", "NARROW", "NARROW", "NARROW", "NARROW", "NARROW", "EXACT", "EXACT", "EXACT", "EXACT", "NARROW", "NARROW", "NARROW", "NARROW", "NARROW", "EXACT", "NARROW" ]
[ "GO:0000167", "GO:0000168", "GO:0000169", "GO:0000173", "GO:0007233" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:0038066" ]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/20380\" xsd:anyURI", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/26610\" xsd:anyURI" ]
null
null
true
true
7
GO:0000162
162
L-tryptophan biosynthetic process
biological_process
The chemical reactions and pathways resulting in the formation of L-tryptophan, the chiral amino acid 2-amino-3-(1H-indol-3-yl)propanoic acid; L-tryptophan is synthesized from chorismate via anthranilate.
[ "GOC:mah", "ISBN:0471331309", "MetaCyc:TRPSYN-PWY" ]
null
[ "aromatic amino acid family biosynthetic process, anthranilate pathway", "L-tryptophan anabolism", "L-tryptophan biosynthesis", "tryptophan biosynthetic process", "tryptophan formation", "tryptophan synthesis" ]
[ "EXACT", "EXACT", "EXACT", "RELATED", "EXACT", "RELATED" ]
[ "GO:0009096" ]
[]
[ "MetaCyc:TRPSYN-PWY" ]
[ "GO:0006568", "GO:0009073", "GO:0046219", "GO:1902223" ]
[]
[]
[]
[ "GO:0006568", "GO:0009073", "GO:0046219", "GO:1902223" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
9
GO:0000164
164
protein phosphatase type 1 complex
cellular_component
A protein complex that possesses magnesium-dependent protein serine/threonine phosphatase (AMD phosphatase) activity, and consists of a catalytic subunit and one or more regulatory subunits that dictates the phosphatase's substrate specificity, function, and activity.
[ "GOC:mah", "GOC:ssd" ]
null
[]
[]
[]
[]
[]
[ "GO:0008287" ]
[ "part_of GO:0005737" ]
[ "part_of" ]
[ "GO:0005737" ]
[ "GO:0005737", "GO:0008287" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
4
GO:0000165
165
MAPK cascade
biological_process
An intracellular protein kinase cascade containing at least a MAP kinase (MAPK). It starts with the activation of a MAP3K, and the consecutive activation of a MPK2K and a MAPK. The cascade can also contain an additional tier: the upstream MAP4K. The kinases in each tier phosphorylate and activate the kinase in the down...
[ "PMID:20811974", "PMID:9561267" ]
MAPK cascades lie downstream of many cell surface receptors and cooperate in transmitting various extracellular signals to the nucleus. One way by which the specificity of each cascade is regulated is through the existence of several distinct components in each tier of the different cascades. The cascades are typically...
[ "ERK/MAPK cascade", "MAP kinase cascade", "MAP kinase kinase kinase cascade", "MAPK signal transduction", "MAPK signaling", "MAPK signalling", "MAPKKK cascade", "MAPKKK cascade during sporulation", "mitogen-activated protein kinase cascade" ]
[ "NARROW", "EXACT", "EXACT", "EXACT", "RELATED", "RELATED", "EXACT", "NARROW", "EXACT" ]
[ "GO:0007255" ]
[]
[ "Reactome:R-HSA-169893 \"Prolonged ERK activation events\"", "Reactome:R-HSA-5673001 \"RAF/MAP kinase cascade\"", "Wikipedia:MAPK_cascade", "Wikipedia:Mitogen-activated_protein_kinase" ]
[ "GO:0141124" ]
[]
[]
[]
[ "GO:0141124" ]
[]
[]
[]
[]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/26806\" xsd:anyURI" ]
null
null
false
true
4
GO:0000166
166
nucleotide binding
molecular_function
Binding to a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
[ "GOC:mah", "ISBN:0198547684" ]
null
[]
[]
[]
[ "goslim_chembl", "goslim_metagenomics", "goslim_pir", "goslim_plant" ]
[]
[ "GO:1901265", "GO:1901363" ]
[]
[]
[]
[ "GO:1901265", "GO:1901363" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
2
GO:0000170
170
obsolete sphingosine hydroxylase activity
molecular_function
OBSOLETE. Catalysis of the hydroxylation of sphingolipid long chain bases.
[ "PMID:9556590" ]
The reason for obsoletion is that this term is equivalent to sphingolipid C4-monooxygenase activity.
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:0102772" ]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/29717\" xsd:anyURI" ]
null
null
true
true
8
GO:0000171
171
ribonuclease MRP activity
molecular_function
Catalysis of the site-specific cleavage of RNA by a catalytic RNA-mediated mechanism; substrates include the A3 site in the ITS1 of pre-rRNA.
[ "PMID:17881380" ]
null
[ "RNase MRP" ]
[ "EXACT" ]
[]
[]
[ "Wikipedia:RNase_MRP" ]
[ "GO:0004521", "GO:0016788" ]
[]
[]
[]
[ "GO:0004521", "GO:0016788" ]
[]
[]
[]
[]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/22261\" xsd:anyURI", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/24408\" xsd:anyURI" ]
null
null
false
true
4
GO:0000172
172
ribonuclease MRP complex
cellular_component
A ribonucleoprotein complex that contains an RNA molecule of the snoRNA family, and cleaves the rRNA precursor as part of rRNA transcript processing. It also has other roles: In S. cerevisiae it is involved in cell cycle-regulated degradation of daughter cell-specific mRNAs, while in mammalian cells it also enters the ...
[ "GOC:sgd_curators", "PMID:10690410", "PMID:14729943", "PMID:7510714" ]
null
[ "ribonuclease mitochondrial RNA processing complex", "RNase MRP complex" ]
[ "EXACT", "EXACT" ]
[]
[]
[]
[ "GO:0005732", "GO:1902555" ]
[]
[]
[]
[ "GO:0005732", "GO:1902555" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
1
GO:0000174
174
obsolete inactivation of MAPK (mating sensu Saccharomyces)
biological_process
OBSOLETE. Downregulation of MAP kinase activity in the context of transduction of mating pheromone signal, as described for Saccharomyces.
[ "PMID:9561267" ]
This term was made obsolete because it is a gene product specific term.
[ "inactivation of MAPK (mating sensu Saccharomyces)" ]
[ "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:0000750" ]
[]
[]
null
null
true
true
8
GO:0000175
175
3'-5'-RNA exonuclease activity
molecular_function
Catalysis of the sequential cleavage of mononucleotides from a free 3' terminus of an RNA molecule.
[ "GOC:mah", "ISBN:0198547684" ]
null
[ "3'-5' exoribonuclease activity", "3'-5'-exoribonuclease activity" ]
[ "EXACT", "EXACT" ]
[]
[]
[ "Reactome:R-HSA-430028 \"Exosome Complex hydrolyzes mRNA by 3' to 5' exoribonuclease digestion\"", "Reactome:R-HSA-6791222 \"21S pre-rRNA is nucleolytically processed at site E (site2a) to yield 18SE pre-rRNA\"", "Reactome:R-HSA-9682603 \"nsp14 acts as a 3'-to-5' exonuclease to remove misincorporated nucleotide...
[ "GO:0008408", "GO:0016896" ]
[]
[]
[]
[ "GO:0008408", "GO:0016896" ]
[]
[]
[]
[]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/28062\" xsd:anyURI" ]
null
null
false
true
9
GO:0000176
176
nuclear exosome (RNase complex)
cellular_component
A ribonuclease complex that has 3-prime to 5-prime processive and distributive hydrolytic exoribonuclease activity and endoribonuclease activity, producing 5-prime-phosphomonoesters. Participates in a multitude of cellular RNA processing and degradation events preventing nuclear export and/or translation of aberrant RN...
[ "PMID:17174896", "PMID:20531386", "PMID:26726035" ]
null
[ "eukaryotic exosome multienzyme ribonuclease complex", "nuclear exosome (ribonuclease complex)", "nuclear exosome multienzyme ribonuclease complex" ]
[ "EXACT", "EXACT", "EXACT" ]
[]
[]
[]
[ "GO:0000178", "GO:0140513" ]
[ "part_of GO:0031981" ]
[ "part_of" ]
[ "GO:0031981" ]
[ "GO:0000178", "GO:0031981", "GO:0140513" ]
[ "GO:0000178", "part_of GO:0005634" ]
[]
[]
[]
[]
[]
null
null
false
true
2
GO:0000177
177
cytoplasmic exosome (RNase complex)
cellular_component
A ribonuclease complex that has 3-prime to 5-prime processive hydrolytic exoribonuclease activity producing 5-prime-phosphomonoesters. Participates in a multitude of cellular RNA processing and degradation events preventing nuclear export and/or translation of aberrant RNAs. Restricted to processing linear and circular...
[ "PMID:17174896", "PMID:20531386", "PMID:26726035" ]
null
[ "cytoplasmic exosome (ribonuclease complex)", "cytoplasmic exosome multienzyme ribonuclease complex", "prokaryotic exosome multienzyme ribonuclease complex" ]
[ "EXACT", "EXACT", "EXACT" ]
[]
[]
[]
[ "GO:0000178" ]
[ "part_of GO:0005737" ]
[ "part_of" ]
[ "GO:0005737" ]
[ "GO:0000178", "GO:0005737" ]
[ "GO:0000178", "part_of GO:0005737" ]
[]
[]
[]
[]
[]
null
null
false
true
7
GO:0000178
178
exosome (RNase complex)
cellular_component
A ribonuclease complex that has 3-prime to 5-prime exoribonuclease activity and possibly endoribonuclease activity, producing 5-prime-phosphomonoesters. Participates in a multitude of cellular RNA processing and degradation events preventing nuclear export and/or translation of aberrant RNAs. Restricted to processing l...
[ "PMID:17174896", "PMID:20531386", "PMID:26726035" ]
Note that this term should not be confused with 'exosome' used in the context of vesicles released from multivesicular bodies.
[ "exosome (ribonucleasease complex)", "exosome multienzyme ribonuclease complex" ]
[ "EXACT", "EXACT" ]
[]
[ "goslim_pir" ]
[]
[ "GO:1905354" ]
[ "part_of GO:0005622" ]
[ "part_of" ]
[ "GO:0005622" ]
[ "GO:0005622", "GO:1905354" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
9
GO:0000179
179
rRNA (adenine-N6,N6-)-dimethyltransferase activity
molecular_function
Catalysis of the dimethylation of two adjacent adenine residues in a rRNA, using S-adenosyl-L-methionine as a methyl donor.
[ "ISBN:1555811337", "PMID:10690410" ]
null
[ "18S rRNA dimethylase activity", "dimethyladenosine transferase activity", "S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase activity" ]
[ "EXACT", "EXACT", "EXACT" ]
[ "GO:0043790" ]
[]
[ "Reactome:R-HSA-6790994 \"DIMT1 dimethylates adenosine-1850,1851 of 18S rRNA yielding 6-dimethyladenosine-1850,1851\"", "Reactome:R-HSA-6793066 \"TFB1M dimethylates adenosine-936 and adenosine-937 of 12S rRNA yielding 6-dimethyladenosine-936 and 6-dimethyladenosine-937\"" ]
[ "GO:0008170", "GO:0016433" ]
[]
[]
[]
[ "GO:0008170", "GO:0016433" ]
[]
[]
[]
[]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/14459\" xsd:anyURI" ]
null
null
false
true
1
GO:0000180
180
obsolete cytosolic large ribosomal subunit
cellular_component
OBSOLETE. (Was not defined before being made obsolete).
[ "GOC:ai" ]
This term was made obsolete because more specific children exist.
[ "cytosolic large ribosomal subunit" ]
[ "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:0022625" ]
[]
null
null
true
true
1
GO:0000181
181
obsolete cytosolic small ribosomal subunit
cellular_component
OBSOLETE. (Was not defined before being made obsolete).
[ "GOC:ai" ]
This term was made obsolete because more specific children exist.
[ "cytosolic small ribosomal subunit" ]
[ "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:0022627" ]
[]
null
null
true
true
7
GO:0000182
182
rDNA binding
molecular_function
Binding to a DNA sequence encoding a ribosomal RNA.
[ "GOC:mah" ]
null
[ "ribosomal DNA binding" ]
[ "EXACT" ]
[]
[]
[]
[ "GO:1990837" ]
[]
[]
[]
[ "GO:1990837" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
2
GO:0000183
183
rDNA heterochromatin formation
biological_process
The formation of heterochromatin at ribosomal DNA, characterized by the modified histone H3K9me3.
[ "PMID:10219245" ]
null
[ "chromatin silencing at rDNA", "chromatin silencing at ribosomal DNA", "heterochromatic silencing at rDNA", "rDNA chromatin silencing", "rDNA heterochromatin assembly" ]
[ "RELATED", "BROAD", "BROAD", "BROAD", "EXACT" ]
[]
[]
[ "Reactome:R-HSA-427359 \"SIRT1 negatively regulates rRNA expression\"", "Reactome:R-HSA-427413 \"NoRC negatively regulates rRNA expression\"" ]
[ "GO:0140718" ]
[ "part_of GO:1990700" ]
[ "part_of" ]
[ "GO:1990700" ]
[ "GO:0140718", "GO:1990700" ]
[]
[]
[]
[]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/19238\" xsd:anyURI", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/23553\" xsd:anyURI" ]
null
null
false
true
6
GO:0000184
184
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
biological_process
The nonsense-mediated decay pathway for nuclear-transcribed mRNAs degrades mRNAs in which an amino-acid codon has changed to a nonsense codon; this prevents the translation of such mRNAs into truncated, and potentially harmful, proteins.
[ "GOC:krc", "GOC:ma", "PMID:10025395" ]
null
[ "mRNA breakdown, nonsense-mediated decay", "mRNA catabolic process, nonsense-mediated", "mRNA catabolism, nonsense-mediated", "mRNA degradation, nonsense-mediated decay", "nonsense-mediated mRNA decay", "nuclear mRNA catabolic process, nonsense-mediated decay" ]
[ "EXACT", "EXACT", "EXACT", "EXACT", "EXACT", "EXACT" ]
[]
[]
[ "Reactome:R-HSA-927802 \"Nonsense-Mediated Decay (NMD)\"", "Wikipedia:Nonsense-mediated_decay", "Wikipedia:Nonsense-mediated_mRNA_decay" ]
[ "GO:0000956" ]
[]
[]
[]
[ "GO:0000956" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
2
GO:0000185
185
obsolete activation of MAPKKK activity
biological_process
OBSOLETE. Any process that initiates the activity of the inactive enzyme MAP kinase kinase kinase (MAPKKK).
[ "PMID:9561267" ]
This term was obsoleted because it represents a molecular function.
[ "activation of MAP kinase kinase kinase", "activation of MAP3K activity", "activation of MAPKKK activity during sporulation", "positive regulation of MAP kinase kinase kinase activity", "positive regulation of MAPKKK activity" ]
[ "EXACT", "EXACT", "NARROW", "BROAD", "BROAD" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:0000165", "GO:0043539" ]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/21307\" xsd:anyURI" ]
null
null
true
true
1
GO:0000186
186
obsolete activation of MAPKK activity
biological_process
OBSOLETE. The initiation of the activity of the inactive enzyme MAP kinase kinase (MAPKK).
[ "PMID:9561267" ]
This term was obsoleted because it represents a molecular function.
[ "activation of MAP kinase kinase activity", "activation of MAP/ERK kinase kinase", "activation of MAP2K activity", "activation of MAPKK activity during sporulation", "positive regulation of MAPKK activity" ]
[ "EXACT", "EXACT", "EXACT", "NARROW", "BROAD" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:0000165", "GO:0043539" ]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/21307\" xsd:anyURI" ]
null
null
true
true
1
GO:0000187
187
obsolete activation of MAPK activity
biological_process
OBSOLETE. The initiation of the activity of the inactive enzyme MAP kinase (MAPK).
[ "PMID:9561267" ]
This term was obsoleted because it represents a molecular function.
[ "activation of MAP kinase", "activation of MAPK activity during sporulation", "MAPK activation" ]
[ "EXACT", "NARROW", "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:0000165", "GO:0043539" ]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/21307\" xsd:anyURI" ]
null
null
true
true
4
GO:0000188
188
obsolete inactivation of MAPK activity
biological_process
OBSOLETE. Any process that terminates the activity of the active enzyme MAP kinase.
[ "PMID:9561267" ]
This term was obsoleted because it represents a molecular function.
[ "inactivation of MAPK during sporulation", "termination of MAPK activity" ]
[ "NARROW", "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:0000165", "GO:0043539" ]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/21308\" xsd:anyURI" ]
null
null
true
true
3
GO:0000189
189
obsolete MAPK import into nucleus
biological_process
OBSOLETE. The directed movement of a MAP kinase to the nucleus upon activation.
[ "PMID:9561267" ]
The reason for obsoletion is that all proteins are imported into the nucleus via the same mechanism, so the import of individual proteins should be captured with extensions or by GO-CAM models.
[ "nuclear translocation of MAPK" ]
[ "NARROW" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:0006606" ]
[]
null
null
true
true
4
GO:0000190
190
obsolete MAPKKK cascade (pseudohyphal growth)
biological_process
OBSOLETE. MAPKKK cascade involved in transduction of signal promoting pseudohyphal or invasive growth.
[ "PMID:9561267" ]
This term was made obsolete because it is a gene product specific term.
[ "MAPKKK cascade (pseudohyphal growth)" ]
[ "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
null
null
true
true
9
GO:0000191
191
obsolete activation of MAPKKK (pseudohyphal growth)
biological_process
OBSOLETE. Upregulation of MAPKKK activity in the context of regulating pseudohyphal or invasive growth.
[ "PMID:9561267" ]
This term was made obsolete because it is a gene product specific term.
[ "activation of MAPKKK (pseudohyphal growth)" ]
[ "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
null
null
true
true
7
GO:0000192
192
obsolete activation of MAPKK (pseudohyphal growth)
biological_process
OBSOLETE. Upregulation of a MAP kinase kinase in the context of regulating pseudohyphal or invasive growth.
[ "PMID:9561267" ]
This term was made obsolete because it is a gene product specific term.
[ "activation of MAPKK (pseudohyphal growth)" ]
[ "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
null
null
true
true
3
GO:0000193
193
obsolete activation of MAPK (pseudohyphal growth)
biological_process
OBSOLETE. Upregulation of MAP kinase activity in the context of regulating pseudohyphal or invasive growth.
[ "PMID:9561267" ]
This term was made obsolete because it is a gene product specific term.
[ "activation of MAPK (pseudohyphal growth)" ]
[ "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
null
null
true
true
5
GO:0000194
194
obsolete inactivation of MAPK (pseudohyphal growth)
biological_process
OBSOLETE. Downregulation of MAP kinase activity in the context of regulating pseudohyphal or invasive growth.
[ "PMID:9561267" ]
This term was made obsolete because it is a gene product specific term.
[ "inactivation of MAPK (pseudohyphal growth)" ]
[ "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
null
null
true
true
8
GO:0000195
195
obsolete nuclear translocation of MAPK (pseudohyphal growth)
biological_process
OBSOLETE. Movement of a MAP kinase to the nucleus in the context of regulating pseudohyphal or invasive growth.
[ "PMID:9561267" ]
This term was made obsolete because it is a gene product specific term.
[ "nuclear translocation of MAPK (pseudohyphal growth)" ]
[ "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
null
null
true
true
8
GO:0000196
196
cell integrity MAPK cascade
biological_process
A MAPK cascade that specifically ensures the maintenance and regulation of cellular structure in response to external signals, including plasma membrane stretching or cell wall alteration, to coordinate cellular responses such as growth, differentiation, and stress adaptation, thereby preserving cell integrity. Contain...
[ "GOC:vw" ]
null
[ "cell integrity MAPK pathway", "cell wall integrity MAPK cascade", "CWI pathway", "Mpk1 cascade", "Pmk1 MAPK cell integrity signaling", "Pmk1 mitogen-activated protein kinase (MAPK) cell integrity pathway", "PMK1-MAPK signal transduction pathway", "Slt2 cascade" ]
[ "EXACT", "NARROW", "RELATED", "NARROW", "NARROW", "NARROW", "NARROW", "NARROW" ]
[]
[]
[]
[ "GO:0051403" ]
[]
[]
[]
[ "GO:0051403" ]
[]
[]
[]
[]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/26610\" xsd:anyURI", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/28384\" xsd:anyURI" ]
null
null
false
true
7
GO:0000197
197
obsolete activation of MAPKKK activity involved in cell wall organization or biogenesis
biological_process
OBSOLETE. Any process that initiates the activity of the inactive enzyme MAP kinase kinase kinase in the context of cell wall organization or biogenesis.
[ "PMID:9561267" ]
This term was obsoleted because it represents a GO-CAM model.
[ "activation of MAP kinase kinase kinase activity during cell wall biogenesis", "activation of MAPKKK activity involved in cell wall biogenesis", "activation of MAPKKK activity involved in cell wall integrity", "cell wall biogenesis, activation of MAP kinase kinase kinase activity", "cell wall biogenesis, ac...
[ "EXACT", "RELATED", "EXACT", "EXACT", "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:0000165", "GO:0043539" ]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/20242\" xsd:anyURI" ]
null
null
true
true
2
GO:0000198
198
obsolete activation of MAPKK activity involved in cell wall organization or biogenesis
biological_process
OBSOLETE. Any process that initiates the activity of the inactive enzyme MAP kinase kinase in the context of cell wall organization or biogenesis.
[ "PMID:9561267" ]
This term was obsoleted because it represents a GO-CAM model.
[ "activation of MAP kinase kinase activity during cell wall biogenesis", "activation of MAPKK activity involved in cell wall biogenesis", "activation of MAPKK activity involved in cell wall integrity", "cell wall biogenesis, activation of MAP kinase kinase activity", "cell wall biogenesis, activation of MAPK...
[ "EXACT", "RELATED", "EXACT", "EXACT", "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/20242\" xsd:anyURI" ]
null
null
true
true
3
GO:0000199
199
obsolete activation of MAPK activity involved in cell wall organization or biogenesis
biological_process
OBSOLETE. Any process that initiates the activity of the inactive enzyme MAP kinase in the context of cell wall biogenesis, the assembly and arrangement of the cell wall, the rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells.
[ "PMID:9561267" ]
This term was obsoleted because it represents a GO-CAM model.
[ "activation of MAPK activity involved in cell wall biogenesis", "activation of MAPK activity involved in cell wall integrity", "cell wall biogenesis, activation of MAPK activity" ]
[ "NARROW", "EXACT", "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/20242\" xsd:anyURI" ]
null
null
true
true
9
GO:0000200
200
obsolete inactivation of MAPK activity involved in cell wall organization or biogenesis
biological_process
OBSOLETE. Any process that terminates the activity of the active enzyme MAP kinase in the context of cell wall organization or biogenesis.
[ "PMID:9561267" ]
This term was obsoleted because it represents a GO-CAM model.
[ "cell wall biogenesis, inactivation of MAPK activity", "cell wall biogenesis, termination of MAPK activity", "inactivation of MAPK activity involved in cell wall integrity", "inactivation of MAPK activity involved in cell wall organization or biogenesis", "termination of MAPK activity during cell wall bioge...
[ "EXACT", "EXACT", "EXACT", "RELATED", "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/20242\" xsd:anyURI" ]
null
null
true
true
4
GO:0000201
201
obsolete MAPK import into nucleus involved in cell wall organization or biogenesis
biological_process
OBSOLETE. The directed movement of a MAP kinase to the nucleus that occurs in the context of cell wall organization or biogenesis.
[ "PMID:9561267" ]
The reason for obsoletion is that this term represents a GO-CAM model.
[ "cell wall biogenesis, MAPK import into nucleus", "cell wall biogenesis, nuclear translocation of MAPK", "MAPK import into nucleus involved in cell wall biogenesis", "MAPK import into nucleus involved in cell wall integrity", "nuclear translocation of MAPK involved in cell wall biogenesis", "nuclear trans...
[ "EXACT", "NARROW", "NARROW", "EXACT", "NARROW", "NARROW" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:0006606" ]
[]
null
null
true
true
9
GO:0000202
202
obsolete MAPKKK cascade during sporulation (sensu Saccharomyces)
biological_process
OBSOLETE. MAPKKK cascade involved in transduction of signal promoting sporulation. As in, but not restricted to, the taxon Saccharomyces (Saccharomyces, ncbi_taxonomy_id:4930).
[ "PMID:9561267" ]
This term was made obsolete because it is a gene product specific term.
[ "MAPKKK cascade during sporulation (sensu Saccharomyces)" ]
[ "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
null
null
true
true
7
GO:0000203
203
obsolete activation of MAPKKK during sporulation (sensu Saccharomyces)
biological_process
OBSOLETE. Upregulation of MAPKKK activity in the context of sporulation. As in, but not restricted to, the taxon Saccharomyces (Saccharomyces, ncbi_taxonomy_id:4930).
[ "PMID:9561267" ]
This term was made obsolete because it is a gene product specific term.
[ "activation of MAPKKK during sporulation (sensu Saccharomyces)" ]
[ "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
null
null
true
true
1
GO:0000204
204
obsolete activation of MAPKK during sporulation (sensu Saccharomyces)
biological_process
OBSOLETE. Upregulation of a MAP kinase kinase in the context of sporulation. As in, but not restricted to, the taxon Saccharomyces (Saccharomyces, ncbi_taxonomy_id:4930).
[ "PMID:9561267" ]
This term was made obsolete because it is a gene product specific term.
[ "activation of MAPKK during sporulation (sensu Saccharomyces)" ]
[ "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
null
null
true
true
5
GO:0000205
205
obsolete activation of MAPK during sporulation (sensu Saccharomyces)
biological_process
OBSOLETE. Upregulation of MAP kinase activity in the context of sporulation. As in, but not restricted to, the taxon Saccharomyces (Saccharomyces, ncbi_taxonomy_id:4930).
[ "PMID:9561267" ]
This term was made obsolete because it is a gene product specific term.
[ "activation of MAPK during sporulation (sensu Saccharomyces)" ]
[ "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
null
null
true
true
2
GO:0000206
206
obsolete inactivation of MAPK during sporulation (sensu Saccharomyces)
biological_process
OBSOLETE. Downregulation of MAP kinase activity in the context of sporulation. As in, but not restricted to, the taxon Saccharomyces (Saccharomyces, ncbi_taxonomy_id:4930).
[ "PMID:9561267" ]
This term was made obsolete because it is a gene product specific term.
[ "inactivation of MAPK during sporulation (sensu Saccharomyces)" ]
[ "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
null
null
true
true
1
GO:0000208
208
obsolete MAPK import into nucleus involved in osmosensory signaling pathway
biological_process
OBSOLETE. The directed movement of a MAP kinase to the nucleus during osmolarity sensing.
[ "PMID:9561267" ]
The reason for obsoletion is that this term represents a GO-CAM model.
[ "MAPK import into nucleus during osmolarity sensing", "MAPK import into nucleus involved in osmosensory signalling pathway", "nuclear translocation of MAPK during osmolarity sensing", "nuclear translocation of MAPK involved in osmosensory signaling pathway", "nuclear translocation of MAPK involved in osmose...
[ "EXACT", "EXACT", "EXACT", "NARROW", "NARROW", "EXACT", "NARROW" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:0006606" ]
[]
null
null
true
true
9
GO:0000209
209
protein polyubiquitination
biological_process
Addition of multiple ubiquitin groups to a protein, forming a ubiquitin chain.
[ "PMID:26906419" ]
null
[ "polyubiquitin", "protein polyubiquitinylation", "protein polyubiquitylation" ]
[ "RELATED", "EXACT", "EXACT" ]
[]
[]
[ "Reactome:R-HSA-983168 \"Antigen processing: Ubiquitination & Proteasome degradation\"" ]
[ "GO:0016567" ]
[]
[]
[]
[ "GO:0016567" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
9
GO:0000210
210
NAD+ diphosphatase activity
molecular_function
Catalysis of the reaction: NAD+ + H2O = AMP + NMN.
[ "RHEA:11800" ]
null
[ "NAD diphosphatase activity", "NAD pyrophosphatase activity", "NAD(+) pyrophosphatase activity", "NAD+ phosphohydrolase activity", "NAD+ pyrophosphatase activity", "NADP pyrophosphatase activity", "nicotinamide adenine dinucleotide pyrophosphatase activity" ]
[ "BROAD", "BROAD", "EXACT", "EXACT", "EXACT", "RELATED", "RELATED" ]
[]
[]
[ "MetaCyc:NADPYROPHOSPHAT-RXN", "RHEA:11800" ]
[ "GO:0004551" ]
[]
[]
[]
[ "GO:0004551" ]
[]
[]
[]
[]
[]
[ "skos:broadMatch EC:3.6.1.22", "skos:exactMatch RHEA:11800", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/19775\" xsd:anyURI", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/30193\" xsd:anyURI" ]
null
null
false
true
4
GO:0000211
211
obsolete protein degradation tagging activity
molecular_function
OBSOLETE. Covalent addition of polyubiquitin to another protein, targeting the tagged protein for destruction.
[ "GOC:cl", "ISBN:0815316194" ]
This term was made obsolete because it represents a biological process and a molecular function.
[ "protein degradation tagging activity" ]
[ "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:0005515", "GO:0019941" ]
[]
null
null
true
true
8
GO:0000212
212
meiotic spindle organization
biological_process
A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the microtubule spindle during a meiotic cell cycle.
[ "GOC:curators", "GOC:mah" ]
null
[ "meiotic spindle organisation", "meiotic spindle organization and biogenesis", "meiotic spindle stabilization", "spindle organization during meiosis" ]
[ "EXACT", "RELATED", "RELATED", "EXACT" ]
[ "GO:0043147" ]
[]
[]
[ "GO:0007051", "GO:1903046" ]
[]
[]
[]
[ "GO:0007051", "GO:1903046" ]
[ "GO:0007051", "part_of GO:0051321" ]
[]
[]
[]
[]
[]
null
null
false
true
7
GO:0000213
213
tRNA-intron lyase activity
molecular_function
Catalysis of the reaction: pretRNA = a 3'-half-tRNA molecule with a 5'-OH end + a 5'-half-tRNA molecule with a 2',3'-cyclic phosphate end + an intron with a 2',3'-cyclic phosphate and a 5'-hydroxyl terminus.
[ "EC:4.6.1.16" ]
null
[ "tRNA splicing endonuclease activity", "tRNA-intron endonuclease activity", "tRNA-intron endoribonuclease activity" ]
[ "RELATED", "EXACT", "EXACT" ]
[]
[]
[ "EC:4.6.1.16", "MetaCyc:3.1.27.9-RXN" ]
[ "GO:0004521", "GO:0004549", "GO:0016849" ]
[]
[]
[]
[ "GO:0004521", "GO:0004549", "GO:0016849" ]
[]
[]
[]
[]
[]
[ "skos:exactMatch EC:4.6.1.16", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/24408\" xsd:anyURI", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/30193\" xsd:anyURI" ]
null
null
false
true
9
GO:0000214
214
tRNA-intron endonuclease complex
cellular_component
A protein complex that catalyzes the endonucleolytic cleavage of pre-tRNA, producing 5'-hydroxyl and 2',3'-cyclic phosphate termini, and specifically removing the intron.
[ "PMID:22391451" ]
null
[ "SEN complex", "tRNA splicing endonuclease complex" ]
[ "EXACT", "EXACT" ]
[]
[]
[]
[ "GO:0140513", "GO:1902555" ]
[]
[]
[]
[ "GO:0140513", "GO:1902555" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
8
GO:0000215
215
tRNA 2'-phosphotransferase activity
molecular_function
Catalysis of the reaction: 2'-phospho-[ligated tRNA] + NAD+ = mature tRNA + ADP ribose 1'',2''-phosphate + nicotinamide + H2O. This reaction is the transfer of the splice junction 2-phosphate from ligated tRNA to NAD+ to produce ADP-ribose 1'-2' cyclic phosphate.
[ "EC:2.7.1.160", "PMID:9148937" ]
null
[ "2'-phospho-[ligated tRNA]:NAD+ phosphotransferase activity", "2'-phospho-tRNA:NAD+ phosphotransferase activity", "2'-phosphotransferase activity", "Tpt1", "Tpt1p", "yeast 2'-phosphotransferase activity" ]
[ "RELATED", "RELATED", "BROAD", "RELATED", "RELATED", "NARROW" ]
[ "GO:0008665" ]
[ "goslim_chembl" ]
[ "EC:2.7.1.160", "MetaCyc:2.7.1.160-RXN", "RHEA:23324" ]
[ "GO:0016773", "GO:0140101" ]
[]
[]
[]
[ "GO:0016773", "GO:0140101" ]
[]
[]
[]
[]
[]
[ "skos:exactMatch EC:2.7.1.160", "skos:exactMatch RHEA:23324", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/30193\" xsd:anyURI" ]
null
null
false
true
8
GO:0000216
216
obsolete M/G1 transition of mitotic cell cycle
biological_process
OBSOLETE. Progression from M phase to G1 phase of the mitotic cell cycle.
[ "GOC:mah", "GOC:mtg_cell_cycle" ]
This term was made obsolete because it does not refer to a real biological process.
[ "M/G1 transition of mitotic cell cycle" ]
[ "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
null
null
true
true
6
GO:0000217
217
DNA secondary structure binding
molecular_function
Binding to a DNA secondary structure element such as a four-way junction, a bubble, a loop, Y-form DNA, or a double-strand/single-strand junction.
[ "GOC:krc" ]
null
[]
[]
[]
[]
[]
[ "GO:0003677" ]
[]
[]
[]
[ "GO:0003677" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
5
GO:0000219
219
obsolete vacuolar hydrogen-transporting ATPase
cellular_component
OBSOLETE. (Was not defined before being made obsolete).
[ "GOC:curators" ]
This term was made obsolete because more specific terms were created.
[ "V-ATPase", "vacuolar hydrogen-transporting ATPase" ]
[ "EXACT", "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:0016469" ]
[]
null
null
true
true
3
GO:0000220
220
vacuolar proton-transporting V-type ATPase, V0 domain
cellular_component
The V0 domain of a proton-transporting V-type ATPase found in the vacuolar membrane.
[ "GOC:mah", "PMID:16449553" ]
Note that this domain often consists of five subunits, although in some mammalian tissues it may have an additional subunit.
[ "vacuolar hydrogen ion-transporting ATPase V0 domain" ]
[ "EXACT" ]
[]
[]
[]
[ "GO:0033179" ]
[ "part_of GO:0016471" ]
[ "part_of" ]
[ "GO:0016471" ]
[ "GO:0016471", "GO:0033179" ]
[ "GO:0033179", "part_of GO:0005774" ]
[]
[]
[]
[]
[]
null
null
false
true
9
GO:0000221
221
vacuolar proton-transporting V-type ATPase, V1 domain
cellular_component
The V1 domain of a proton-transporting V-type ATPase found in the vacuolar membrane.
[ "GOC:mah", "PMID:16449553" ]
Note that this domain generally consists of eight subunits.
[ "vacuolar hydrogen ion-transporting ATPase V1 domain" ]
[ "EXACT" ]
[]
[]
[]
[ "GO:0033180" ]
[ "part_of GO:0016471" ]
[ "part_of" ]
[ "GO:0016471" ]
[ "GO:0016471", "GO:0033180" ]
[ "GO:0033180", "part_of GO:0005773" ]
[]
[]
[]
[]
[]
null
null
false
true
3
GO:0000222
222
plasma membrane proton-transporting V-type ATPase, V0 domain
cellular_component
The V0 domain of a proton-transporting V-type ATPase found in the plasma membrane.
[ "GOC:mah" ]
null
[ "plasma membrane hydrogen ion-transporting ATPase V0 domain" ]
[ "EXACT" ]
[]
[]
[]
[ "GO:0033179", "GO:0098797" ]
[ "part_of GO:0033181" ]
[ "part_of" ]
[ "GO:0033181" ]
[ "GO:0033179", "GO:0033181", "GO:0098797" ]
[ "GO:0033179", "part_of GO:0005886" ]
[]
[]
[]
[]
[]
null
null
false
true
1
GO:0000223
223
plasma membrane proton-transporting V-type ATPase, V1 domain
cellular_component
The V1 domain of a proton-transporting V-type ATPase found in the plasma membrane.
[ "GOC:mah" ]
null
[ "plasma membrane hydrogen ion-transporting ATPase V1 domain" ]
[ "EXACT" ]
[]
[]
[]
[ "GO:0033180", "GO:0098797" ]
[ "part_of GO:0033181" ]
[ "part_of" ]
[ "GO:0033181" ]
[ "GO:0033180", "GO:0033181", "GO:0098797" ]
[ "GO:0033180", "part_of GO:0005886" ]
[]
[]
[]
[]
[]
null
null
false
true
1
GO:0000224
224
peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase activity
molecular_function
Catalysis of the reaction: 4-N-(N-acetyl-D-glucosaminyl)-protein + H2O = N-acetyl-beta-D-glucosaminylamine + peptide L-aspartate. This reaction is the hydrolysis of an N4-(acetyl-beta-D-glucosaminyl)asparagine residue in which the N-acetyl-D-glucosamine residue may be further glycosylated, to yield a (substituted) N-ac...
[ "EC:3.5.1.52" ]
null
[ "glycopeptidase activity", "glycopeptide N-glycosidase activity", "jack-bean glycopeptidase", "N-glycanase activity", "N-linked-glycopeptide-(N-acetyl-beta-D-glucosaminyl)-L-asparagine amidohydrolase activity", "N-oligosaccharide glycopeptidase activity", "peptide:N-glycanase", "PNGase", "PNGase A",...
[ "BROAD", "BROAD", "NARROW", "RELATED", "RELATED", "RELATED", "RELATED", "EXACT", "RELATED", "RELATED" ]
[]
[]
[ "EC:3.5.1.52", "MetaCyc:3.5.1.52-RXN", "Reactome:R-HSA-8850594 \"Deglycosylation complex hydrolyses N-glycans from unfolded glycoproteins\"" ]
[ "GO:0016811" ]
[]
[]
[]
[ "GO:0016811" ]
[]
[]
[]
[]
[]
[ "skos:exactMatch EC:3.5.1.52", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/30193\" xsd:anyURI" ]
null
null
false
true
6
GO:0000225
225
N-acetylglucosaminylphosphatidylinositol deacetylase activity
molecular_function
Catalysis of the reaction: N-acetyl-D-glucosaminylphosphatidylinositol + H2O = D-glucosaminylphosphatidylinositol + acetate. This reaction is the second step of the biosynthesis of glycosylphosphatidylinositol (GPI), used to anchor various eukaryotic proteins to the cell-surface membrane.
[ "EC:3.5.1.89" ]
null
[ "6-(N-acetyl-alpha-D-glucosaminyl)-1-phosphatidyl-1D-myo-inositol acetylhydrolase activity", "acetylglucosaminylphosphatidylinositol deacetylase activity", "GlcNAc-PI de-N-acetylase activity", "GlcNAc-PI deacetylase activity", "N-acetyl-D-glucosaminylphosphatidylinositol acetylhydrolase activity", "N-acet...
[ "RELATED", "RELATED", "RELATED", "RELATED", "RELATED", "RELATED" ]
[]
[]
[ "EC:3.5.1.89", "MetaCyc:3.1.1.69-RXN", "Reactome:R-HSA-162857 \"N-acetylglucosaminyl-PI + H2O -> glucosaminyl-PI + acetate\"", "RHEA:11660" ]
[ "GO:0016811", "GO:0019213" ]
[]
[]
[]
[ "GO:0016811", "GO:0019213" ]
[]
[]
[]
[]
[]
[ "skos:exactMatch EC:3.5.1.89", "skos:exactMatch RHEA:11660", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/30193\" xsd:anyURI" ]
null
null
false
true
8
GO:0000226
226
microtubule cytoskeleton organization
biological_process
A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising microtubules and their associated proteins.
[ "GOC:mah" ]
null
[ "microtubule cytoskeleton organisation", "microtubule cytoskeleton organization and biogenesis" ]
[ "EXACT", "RELATED" ]
[]
[ "goslim_pombe" ]
[]
[ "GO:0007010", "GO:0007017" ]
[]
[]
[]
[ "GO:0007010", "GO:0007017" ]
[]
[]
[]
[]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/23114\" xsd:anyURI", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/23195\" xsd:anyURI" ]
null
null
false
true
5
GO:0000227
227
obsolete oxaloacetate secondary active transmembrane transporter activity
molecular_function
OBSOLETE. Enables the transfer of oxaloacetate from one side of a membrane to the other, up its concentration gradient. The transporter binds the solute and undergoes a series of conformational changes. Transport works equally well in either direction and is driven by a chemiosmotic source of energy. Secondary active t...
[ "GOC:mtg_transport" ]
This term was obsoleted because it does not define a specific transport mechanism.
[ "oxaloacetate carrier activity" ]
[ "RELATED" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:0015131" ]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/27771\" xsd:anyURI" ]
null
null
true
true
1
GO:0000229
229
obsolete cytoplasmic chromosome
cellular_component
OBSOLETE. A chromosome found in the cytoplasm.
[ "GOC:mah" ]
This term was obsoleted because it is an unnecessary grouping class.
[ "cytoplasmic interphase chromosome" ]
[ "NARROW" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:0005694" ]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/22177\" xsd:anyURI" ]
null
null
true
true
4
GO:0000230
230
obsolete nuclear mitotic chromosome
cellular_component
OBSOLETE. A chromosome found in the nucleus during mitosis.
[ "GOC:mah" ]
This term was made obsolete because it is based on a temporal division of the cell cycle.
[ "nuclear mitotic chromosome" ]
[ "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:0000794" ]
[]
null
null
true
true
3
GO:0000231
231
obsolete cytoplasmic mitotic chromosome
cellular_component
OBSOLETE. A chromosome found in the cytoplasm during mitosis.
[ "GOC:mah" ]
This term was made obsolete because it is based on a temporal division of the cell cycle.
[ "cytoplasmic mitotic chromosome" ]
[ "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:0000793" ]
[]
null
null
true
true
5
GO:0000232
232
obsolete nuclear interphase chromosome
cellular_component
OBSOLETE. A chromosome found in the nucleus during interphase.
[ "GOC:mah" ]
This term was made obsolete because it is based on a temporal division of the cell cycle.
[ "nuclear interphase chromosome" ]
[ "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:0000228" ]
[]
null
null
true
true
7
GO:0000233
233
obsolete cytoplasmic interphase chromosome
cellular_component
OBSOLETE. A chromosome found in the cytoplasm during interphase.
[ "GOC:mah" ]
This term was made obsolete because it is based on a temporal division of the cell cycle.
[ "cytoplasmic interphase chromosome" ]
[ "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:0005694" ]
[]
null
null
true
true
5
GO:0000234
234
phosphoethanolamine N-methyltransferase activity
molecular_function
Catalysis of the reaction: S-adenosyl-L-methionine + ethanolamine phosphate = S-adenosyl-L-homocysteine + N-methylethanolamine phosphate.
[ "EC:2.1.1.103" ]
null
[ "phosphoethanolamine methyltransferase activity", "S-adenosyl-L-methionine:ethanolamine-phosphate N-methyltransferase activity" ]
[ "RELATED", "RELATED" ]
[]
[]
[ "EC:2.1.1.103", "KEGG_REACTION:R02037", "KEGG_REACTION:R06868", "MetaCyc:2.1.1.103-RXN", "MetaCyc:RXN-5642", "MetaCyc:RXN-5643", "RHEA:20365", "RHEA:25321", "RHEA:25325" ]
[ "GO:0008170", "GO:0008757" ]
[]
[]
[]
[ "GO:0008170", "GO:0008757" ]
[]
[]
[]
[]
[]
[ "skos:exactMatch EC:2.1.1.103", "skos:narrowMatch MetaCyc:2.1.1.103-RXN", "skos:narrowMatch MetaCyc:RXN-5642", "skos:narrowMatch MetaCyc:RXN-5643", "skos:narrowMatch RHEA:20365", "skos:narrowMatch RHEA:25321", "skos:narrowMatch RHEA:25325", "term_tracker_item \"https://github.com/geneontology/go-ontol...
null
null
false
true
5
GO:0000235
235
astral microtubule
cellular_component
Any of the spindle microtubules that radiate in all directions from the spindle poles and are thought to contribute to the forces that separate the poles and position them in relation to the rest of the cell.
[ "ISBN:0815316194" ]
null
[]
[]
[]
[]
[]
[ "GO:0005876", "GO:0005881" ]
[ "part_of GO:0005818" ]
[ "part_of" ]
[ "GO:0005818" ]
[ "GO:0005818", "GO:0005876", "GO:0005881" ]
[ "GO:0005876", "part_of GO:0005818" ]
[]
[]
[]
[]
[]
null
null
false
true
1
GO:0000236
236
mitotic prometaphase
biological_process
The cell cycle phase in higher eukaryotes which follows mitotic prophase and during which the nuclear envelope is disrupted and breaks into membrane vesicles, and the spindle microtubules enter the nuclear region. Kinetochores mature on each centromere and attach to some of the spindle microtubules. Kinetochore microtu...
[ "GOC:mtg_cell_cycle" ]
Note that this term should not be used for direct annotation. If you are trying to make an annotation to x phase, it is likely that the correct annotation is 'regulation of x/y phase transition' or to a process which occurs during the reported phase (i.e mitotic DNA replication for mitotic S-phase). To capture the phas...
[]
[]
[]
[ "gocheck_do_not_annotate" ]
[ "Reactome:R-HSA-68877 \"Mitotic Prometaphase\"" ]
[ "GO:0000087" ]
[]
[]
[]
[ "GO:0000087" ]
[]
[]
[]
[]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/24374\" xsd:anyURI" ]
null
null
false
true
2
GO:0000237
237
leptotene
biological_process
The cell cycle phase which is the first stage of prophase I in meiosis, and during which the chromosomes first become visible.
[ "GOC:mtg_cell_cycle" ]
Note that this term should not be used for direct annotation. If you are trying to make an annotation to x phase, it is likely that the correct annotation is 'regulation of x/y phase transition' or to a process which occurs during the reported phase (i.e mitotic DNA replication for mitotic S-phase). To capture the phas...
[]
[]
[]
[ "gocheck_do_not_annotate" ]
[ "Wikipedia:Leptotene", "Wikipedia:Meiosis#Leptotene" ]
[ "GO:0098764" ]
[ "part_of GO:0007128" ]
[ "part_of" ]
[ "GO:0007128" ]
[ "GO:0007128", "GO:0098764" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
1
GO:0000238
238
zygotene
biological_process
The cell cycle phase which follows leptotene during prophase I of meiosis, and during which each chromosome pairs with its homolog; the two become aligned and crossing over may occur.
[ "GOC:mtg_cell_cycle" ]
Note that this term should not be used for direct annotation. If you are trying to make an annotation to x phase, it is likely that the correct annotation is 'regulation of x/y phase transition' or to a process which occurs during the reported phase (i.e mitotic DNA replication for mitotic S-phase). To capture the phas...
[]
[]
[]
[ "gocheck_do_not_annotate" ]
[ "Wikipedia:Meiosis#Zygotene", "Wikipedia:Zygotene" ]
[ "GO:0098764" ]
[ "part_of GO:0007128" ]
[ "part_of" ]
[ "GO:0007128" ]
[ "GO:0007128", "GO:0098764" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
7
GO:0000239
239
pachytene
biological_process
The cell cycle phase which follows zygotene during prophase I of meiosis, and during which crossing over occurs between a chromatid in one partner and another chromatid in the homologous chromosome.
[ "GOC:mtg_cell_cycle" ]
Note that this term should not be used for direct annotation. If you are trying to make an annotation to x phase, it is likely that the correct annotation is 'regulation of x/y phase transition' or to a process which occurs during the reported phase (i.e mitotic DNA replication for mitotic S-phase). To capture the phas...
[]
[]
[]
[ "gocheck_do_not_annotate" ]
[ "Wikipedia:Meiosis#Pachytene", "Wikipedia:Pachytene" ]
[ "GO:0098764" ]
[ "part_of GO:0007128" ]
[ "part_of" ]
[ "GO:0007128" ]
[ "GO:0007128", "GO:0098764" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
8
GO:0000240
240
diplotene
biological_process
The cell cycle phase which follows pachytene during prophase I of meiosis, during which the homologous chromosomes begin to separate and the synaptonemal complex dissolves.
[ "GOC:mtg_cell_cycle" ]
Note that this term should not be used for direct annotation. If you are trying to make an annotation to x phase, it is likely that the correct annotation is 'regulation of x/y phase transition' or to a process which occurs during the reported phase (i.e mitotic DNA replication for mitotic S-phase). To capture the phas...
[]
[]
[]
[ "gocheck_do_not_annotate" ]
[ "Wikipedia:Diplotene", "Wikipedia:Meiosis#Diplotene" ]
[ "GO:0098764" ]
[ "part_of GO:0007128" ]
[ "part_of" ]
[ "GO:0007128" ]
[ "GO:0007128", "GO:0098764" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
3
GO:0000241
241
diakinesis
biological_process
The cell cycle phase which follows diplotene during prophase I of meiosis, the separation of homologous chromosomes is complete and crossing over has occurred.
[ "GOC:mtg_cell_cycle" ]
Note that this term should not be used for direct annotation. If you are trying to make an annotation to x phase, it is likely that the correct annotation is 'regulation of x/y phase transition' or to a process which occurs during the reported phase (i.e mitotic DNA replication for mitotic S-phase). To capture the phas...
[]
[]
[]
[ "gocheck_do_not_annotate" ]
[ "Wikipedia:Diakinesis", "Wikipedia:Meiosis#Diakinesis" ]
[ "GO:0098764" ]
[ "part_of GO:0007128" ]
[ "part_of" ]
[ "GO:0007128" ]
[ "GO:0007128", "GO:0098764" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
1
GO:0000242
242
pericentriolar material
cellular_component
A network of small fibers that surrounds the centrioles in cells; contains the microtubule nucleating activity of the centrosome.
[ "GOC:clt", "ISBN:0815316194" ]
null
[]
[]
[]
[]
[]
[ "GO:0110165" ]
[ "part_of GO:0005813" ]
[ "part_of" ]
[ "GO:0005813" ]
[ "GO:0005813", "GO:0110165" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
6
GO:0000243
243
commitment complex
cellular_component
A spliceosomal complex that is formed by association of the U1 snRNP with the 5' splice site of an unspliced intron in an RNA transcript.
[ "GOC:krc", "ISBN:0879695897", "PMID:9150140" ]
null
[ "mammalian spliceosomal complex E", "mammalian spliceosomal E complex", "yeast spliceosomal complex CC" ]
[ "NARROW", "NARROW", "NARROW" ]
[]
[]
[]
[ "GO:0005684" ]
[ "has_part GO:0005685" ]
[ "has_part" ]
[ "GO:0005685" ]
[ "GO:0005684", "GO:0005685" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
2
GO:0000244
244
spliceosomal tri-snRNP complex assembly
biological_process
The formation of a tri-snRNP complex containing U4 and U6 (or U4atac and U6atac) snRNAs and U5 snRNAs and associated proteins. This includes reannealing of U4 and U6 (or U4atac and U6atac) snRNAs released from previous rounds of splicing to reform the U4/U6 snRNP (or U4atac/U6atac snRNP) as well as the subsequent assoc...
[ "ISBN:0879695897", "PMID:9452384" ]
null
[ "assembly of spliceosomal tri-snRNP", "assembly of spliceosomal tri-snRNP U4/U6.U5", "assembly of spliceosomal tri-snRNP U4atac/U6atac.U5", "snRNP recycling", "spliceosomal tri-snRNP assembly", "spliceosomal tri-snRNP U4/U6.U5 assembly", "spliceosomal tri-snRNP U4atac/U6atac.U5 assembly" ]
[ "EXACT", "NARROW", "NARROW", "BROAD", "EXACT", "NARROW", "NARROW" ]
[ "GO:0000351", "GO:0000355" ]
[]
[]
[ "GO:0000387" ]
[]
[]
[]
[ "GO:0000387" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
6
GO:0000245
245
spliceosomal complex assembly
biological_process
The aggregation, arrangement and bonding together of a spliceosomal complex, a ribonucleoprotein apparatus that catalyzes nuclear mRNA splicing via transesterification reactions.
[ "PMID:9476892" ]
null
[ "spliceosome assembly" ]
[ "BROAD" ]
[]
[]
[]
[ "GO:0022618" ]
[ "part_of GO:0000398" ]
[ "part_of" ]
[ "GO:0000398" ]
[ "GO:0000398", "GO:0022618" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
4
GO:0000246
246
Delta24(24-1) sterol reductase activity
molecular_function
Catalysis of the reaction: ergosterol + NADP+ = ergosta-5,7,22,24(24(1))-tetraen-3beta-ol + H+ + NADPH.
[ "EC:1.3.1.71", "RHEA:18501" ]
null
[ "C-24(28) sterol reductase activity", "D24(24-1)-sterol reductase activity", "delta24(241)-sterol reductase activity", "ergosterol:NADP+ delta24(241)-oxidoreductase activity", "sterol Delta(24(28))-methylene reductase activity", "sterol Delta(24(28))-reductase activity", "sterol delta-24(28) methylene r...
[ "RELATED", "EXACT", "RELATED", "RELATED", "RELATED", "RELATED", "EXACT", "EXACT", "RELATED", "RELATED" ]
[]
[]
[ "EC:1.3.1.71", "KEGG_REACTION:R05641", "MetaCyc:1.3.1.71-RXN", "RHEA:18501" ]
[ "GO:0016628" ]
[]
[]
[]
[ "GO:0016628" ]
[]
[]
[]
[]
[]
[ "skos:exactMatch EC:1.3.1.71", "skos:exactMatch RHEA:18501", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/30193\" xsd:anyURI" ]
null
null
false
true
4
GO:0000247
247
C-8 sterol isomerase activity
molecular_function
Catalysis of the reaction: fecosterol = episterol.
[ "PMID:8988026", "RHEA:33435" ]
null
[ "delta-8-delta-7 sterol isomerase activity" ]
[ "EXACT" ]
[]
[]
[ "MetaCyc:RXN3O-203", "RHEA:33435" ]
[ "GO:0016863" ]
[]
[]
[]
[ "GO:0016863" ]
[]
[]
[]
[]
[]
[ "skos:exactMatch MetaCyc:RXN3O-203", "skos:exactMatch RHEA:33435", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/28324\" xsd:anyURI" ]
null
null
false
true
5
GO:0000248
248
C-5 sterol desaturase activity
molecular_function
Catalysis of the reaction: 5,7,24(28)-ergostatrienol + O2 + NADPH = 5,7,22,24(28)-ergostatetraenol + 2 H2O + NADP+.
[ "GOC:curators" ]
null
[ "sterol-C5-desaturase activity" ]
[ "EXACT" ]
[]
[]
[ "Reactome:R-HSA-195664 \"Cholesta-7,24-dien-3beta-ol is desaturated to form cholesta-5,7,24-trien-3beta-ol\"", "Reactome:R-HSA-6807053 \"SC5D desaturates LTHSOL to 7-dehydroCHOL\"" ]
[ "GO:0070704" ]
[]
[]
[]
[ "GO:0070704" ]
[]
[]
[]
[]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/27381\" xsd:anyURI" ]
null
null
false
true
6
GO:0000249
249
C-22 sterol desaturase (NADPH) activity
molecular_function
Catalysis of the reaction: 5-dehydroepisterol + H+ + NADPH + O2 = ergosta-5,7,22,24(28)-tetraen-3beta-ol + 2 H2O + NADP+. This reaction is the introduction of a double bond between the C-22 and C-23 carbons of certain sterols. Also converts sitosterol and 24-epi-campesterol to stigmasterol and brassicasterol, respectiv...
[ "EC:1.14.19.41" ]
null
[]
[]
[]
[]
[ "EC:1.14.19.41", "MetaCyc:RXN3O-227", "RHEA:33467", "RHEA:46576" ]
[ "GO:0070704" ]
[]
[]
[]
[ "GO:0070704" ]
[]
[]
[]
[]
[]
[ "skos:exactMatch EC:1.14.19.41", "skos:exactMatch MetaCyc:RXN3O-227", "skos:narrowMatch RHEA:33467", "skos:narrowMatch RHEA:46576", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/27381\" xsd:anyURI" ]
null
null
false
true
7
GO:0000250
250
lanosterol synthase activity
molecular_function
Catalysis of the reaction: (S)-2,3-epoxysqualene = lanosterol. This is a cyclization reaction that forms the sterol nucleus.
[ "EC:5.4.99.7", "RHEA:14621" ]
null
[ "(S)-2,3-epoxysqualene mutase (cyclizing, lanosterol-forming)", "2,3-epoxysqualene lanosterol cyclase activity", "2,3-epoxysqualene--lanosterol cyclase activity", "2,3-epoxysqualene-lanosterol cyclase activity", "2,3-oxidosqualene sterol cyclase activity", "2,3-oxidosqualene-lanosterol cyclase activity", ...
[ "RELATED", "RELATED", "RELATED", "EXACT", "BROAD", "RELATED", "RELATED", "EXACT", "RELATED", "EXACT", "EXACT", "RELATED", "BROAD", "RELATED" ]
[]
[]
[ "EC:5.4.99.7", "KEGG_REACTION:R03199", "MetaCyc:LANOSTEROL-SYNTHASE-RXN", "Reactome:R-HSA-191366 \"Squalene 2,3-epoxide cyclizes, forming lanosterol\"", "RHEA:14621" ]
[ "GO:0031559" ]
[]
[]
[]
[ "GO:0031559" ]
[]
[]
[]
[]
[]
[ "skos:exactMatch EC:5.4.99.7", "skos:exactMatch RHEA:14621", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/30193\" xsd:anyURI" ]
null
null
false
true
6