LiteFold/GO · Datasets at Hugging Face

GO:0071523

71,523

obsolete TIR domain-mediated complex assembly

biological_process

OBSOLETE. A process of protein complex assembly in which the arrangement and bonding together of the set of components that form the protein complex is mediated by a TIR domain interaction.

[ "GOC:amm" ]

This term was obsoleted because it represented a molecular function (binding), not a biological process. The term represented a domain involved in protein-protein interactions, but no necessarily the process of assembling a complex.

[]

mah

2010-01-07T02:11:47Z

true

5

GO:0071524

71,524

pyrrolysine biosynthetic process

biological_process

The chemical reactions and pathways resulting in the formation of pyrrolysine.

[ "GOC:curators", "PMID:17204561" ]

null

[ "monomethylamine methyltransferase cofactor lysine adduct biosynthetic process", "pyrrolysine anabolism", "pyrrolysine biosynthesis", "pyrrolysine formation", "pyrrolysine synthesis" ]

[ "EXACT", "EXACT", "EXACT", "EXACT", "EXACT" ]

[]

[ "MetaCyc:PWY-6994" ]

[ "GO:0008652", "GO:0042398", "GO:0170038" ]

[]

[ "GO:0008652", "GO:0042398", "GO:0170038" ]

[]

[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/31510\" xsd:anyURI" ]

mah

2010-01-07T02:40:24Z

false

true

4

GO:0071525

71,525

obsolete pyrrolysine metabolic process

biological_process

OBSOLETE. The chemical reactions and pathways involving pyrrolysine, N6-{[(2R,3R)-3-methyl-3,4-dihydro-2H-pyrrol-2-yl]carbonyl}-L-lysine.

[ "GOC:mah", "PMID:17204561" ]

This term was obsoleted because it is an unnecessary grouping class.

[ "monomethylamine methyltransferase cofactor lysine adduct metabolic process", "pyrrolysine metabolism" ]

[ "EXACT", "EXACT" ]

[]

[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/30524\" xsd:anyURI" ]

mah

2010-01-07T02:44:49Z

true

6

GO:0071526

71,526

semaphorin-plexin signaling pathway

biological_process

The series of molecular signals generated as a consequence of a semaphorin receptor (composed of a plexin and a neurophilin) binding to a semaphorin ligand.

[ "GOC:BHF", "GOC:mah", "GOC:vk", "PMID:15239959" ]

null

[ "semaphorin-plexin signalling pathway" ]

[ "EXACT" ]

[]

[ "GO:0007166" ]

[]

[ "GO:0007166" ]

[]

mah

2010-01-07T03:48:07Z

false

true

1

GO:0071527

71,527

obsolete semaphorin-plexin signaling pathway involved in outflow tract morphogenesis

biological_process

OBSOLETE. The series of molecular signals generated as a consequence of a semaphorin receptor (composed of a plexin and a neurophilin) binding to a semaphorin ligand that contributes to outflow tract morphogenesis.

[ "GOC:BHF", "GOC:mah", "GOC:vk", "PMID:15239959" ]

This term was obsoleted because it is a pre-composed term that should be captured as a GO-CAM model.

[ "semaphorin-plexin signalling pathway involved in outflow tract morphogenesis" ]

[ "EXACT" ]

[]

[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/31306\" xsd:anyURI" ]

mah

2010-01-07T03:49:33Z

true

4

GO:0071528

71,528

tRNA re-export from nucleus

biological_process

The directed movement from the nucleus to the cytoplasm of a tRNA that was previously exported to the cytoplasm and then imported back into the nucleus. The processes of primary tRNA export and secondary export (re-export) can be distinguished because in organisms in which tRNA splicing occurs in the cytoplasm, the exp...

[ "GOC:mcc", "PMID:17475781", "PMID:20032305" ]

null

[ "tRNA reexport from nucleus" ]

[ "EXACT" ]

[]

[ "GO:0006409" ]

[]

[ "GO:0006409" ]

[]

mah

2010-01-07T04:17:05Z

false

true

7

GO:0071529

71,529

cementum mineralization

biological_process

The process in which calcium salts, mainly carbonated hydroxyapatite, are deposited into the initial acellular cementum.

[ "GOC:sl", "PMID:17043865" ]

null

[ "cementum formation" ]

[ "RELATED" ]

[]

[ "GO:0034505" ]

[]

[ "GO:0034505" ]

[]

mah

2010-01-07T04:18:54Z

false

true

2

GO:0071530

71,530

obsolete FHA domain-mediated complex assembly

biological_process

OBSOLETE. A process of protein complex assembly in which the arrangement and bonding together of the set of components that form the protein complex is mediated by an FHA (forkhead-associated) domain interaction.

[ "GOC:amm", "InterPro:IPR000253" ]

This term was obsoleted because it represented a molecular function (binding), not a biological process. The term represented a domain involved in protein-protein interactions, but no necessarily the process of assembling a complex.

[ "forkhead-associated domain-mediated complex assembly" ]

[ "EXACT" ]

[]

mah

2010-01-08T01:57:36Z

true

8

GO:0071531

71,531

obsolete Rel homology domain-mediated complex assembly

biological_process

OBSOLETE. A process of protein complex assembly in which the arrangement and bonding together of the set of components that form the protein complex is mediated by a Rel homology domain (RHD) interaction.

[ "GOC:amm", "InterPro:IPR011539" ]

This term was obsoleted because it represented a molecular function (binding), not a biological process. The term represented a domain involved in protein-protein interactions, but no necessarily the process of assembling a complex.

[ "RHD domain-mediated complex assembly" ]

[ "EXACT" ]

[]

mah

2010-01-08T02:16:39Z

true

8

GO:0071532

71,532

ankyrin repeat binding

molecular_function

Binding to an ankyrin repeat of a protein. Ankyrin repeats are tandemly repeated modules of about 33 amino acids; each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90-degree angle, and repeats stack to form an L-shaped structure.

[ "GOC:mah", "InterPro:IPR002110" ]

null

[ "ANK repeat binding" ]

[ "EXACT" ]

[]

[ "GO:0019904" ]

[]

[ "GO:0019904" ]

[]

mah

2010-01-08T02:21:02Z

false

true

7

GO:0071533

71,533

obsolete ankyrin repeat-mediated complex assembly

biological_process

OBSOLETE. A process of protein complex assembly in which the arrangement and bonding together of the set of components that form the protein complex is mediated by an ankyrin repeat interaction.

[ "GOC:amm", "InterPro:IPR002110" ]

This term was obsoleted because it represented a molecular function (binding), not a biological process. The term represented a domain involved in protein-protein interactions, but no necessarily the process of assembling a complex.

[ "ANK repeat-mediated complex assembly" ]

[ "EXACT" ]

[]

mah

2010-01-08T02:27:56Z

true

9

GO:0071534

71,534

obsolete zf-TRAF domain-mediated complex assembly

biological_process

OBSOLETE. A process of protein complex assembly in which the arrangement and bonding together of the set of components that form the protein complex is mediated by a TRAF-type zinc finger (zf-TRAF) domain interaction.

[ "GOC:amm", "InterPro:IPR001293" ]

This term was obsoleted because it represented a molecular function (binding), not a biological process. The term represented a domain involved in protein-protein interactions, but no necessarily the process of assembling a complex.

[ "TRAF-type zinc finger domain-mediated complex assembly", "zinc finger TRAF-type domain-mediated complex assembly", "zinc-finger-TRAF domain-mediated complex assembly" ]

[ "EXACT", "EXACT", "EXACT" ]

[]

mah

2010-01-08T02:40:50Z

true

8

GO:0071535

71,535

RING-like zinc finger domain binding

molecular_function

Binding to a RING-like zinc finger domain domain of a protein. The RING-like domain is a zinc finger domain that is related to the C3HC4 RING finger domain.

[ "GOC:mah", "InterPro:IPR014857" ]

null

[]

[ "GO:0019904" ]

[]

[ "GO:0019904" ]

[]

mah

2010-01-08T03:10:14Z

false

true

6

GO:0071537

71,537

obsolete C3HC4-type RING finger domain-mediated complex assembly

biological_process

OBSOLETE. A process of protein complex assembly in which the arrangement and bonding together of the set of components that form the protein complex is mediated by a C3HC4-type RING finger domain interaction.

[ "GOC:amm", "InterPro:IPR018957" ]

This term was obsoleted because it represented a molecular function (binding), not a biological process. The term represented a domain involved in protein-protein interactions, but no necessarily the process of assembling a complex.

[ "zinc finger C3HC4 type domain-mediated complex assembly" ]

[ "EXACT" ]

[]

mah

2010-01-08T03:42:46Z

true

2

GO:0071538

71,538

obsolete SH2 domain-mediated complex assembly

biological_process

OBSOLETE. A process of protein complex assembly in which the arrangement and bonding together of the set of components that form the protein complex is mediated by an SH2 domain interaction.

[ "GOC:amm" ]

This term was obsoleted because it represented a molecular function (binding), not a biological process. The term represented a domain involved in protein-protein interactions, but no necessarily the process of assembling a complex.

[]

mah

2010-01-08T03:46:16Z

true

5

GO:0071540

71,540

eukaryotic translation initiation factor 3 complex, eIF3e

cellular_component

An eukaryotic translation initiation factor 3 complex that contains the PCI-domain protein eIF3e.

[ "PMID:15904532", "PMID:19061185" ]

null

[ "eIF3e-containing eukaryotic translation initiation factor 3 complex" ]

[ "EXACT" ]

[]

[ "GO:0005852" ]

[]

[ "GO:0005852" ]

[]

mah

2010-01-12T02:20:24Z

false

true

5

GO:0071541

71,541

eukaryotic translation initiation factor 3 complex, eIF3m

cellular_component

An eukaryotic translation initiation factor 3 complex that contains the PCI-domain protein eIF3m.

[ "PMID:15904532", "PMID:19061185" ]

null

[ "eIF3m-containing eukaryotic translation initiation factor 3 complex" ]

[ "EXACT" ]

[]

[ "GO:0005852" ]

[]

[ "GO:0005852" ]

[]

mah

2010-01-12T02:26:41Z

false

true

2

GO:0071542

71,542

dopaminergic neuron differentiation

biological_process

The process in which a neuroblast acquires the specialized structural and functional features of a dopaminergic neuron, a neuron that secretes dopamine.

[ "GOC:rph" ]

null

[]

[ "GO:0030182" ]

[]

[ "GO:0030182" ]

[]

mah

2010-01-12T02:28:44Z

false

true

1

GO:0071543

71,543

diphosphoinositol polyphosphate metabolic process

biological_process

The chemical reactions and pathways involving a diphosphoinositol polyphosphate, 1,2,3,4,5,6-cyclohexanehexol with one or more diphosphate groups and multiple monophosphate groups attached.

[ "GOC:mah", "PMID:12387729" ]

null

[ "diphosphoinositol polyphosphate metabolism" ]

[ "EXACT" ]

[]

[ "GO:0043647" ]

[]

[ "GO:0043647" ]

[]

mah

2010-01-12T05:04:00Z

false

true

6

GO:0071544

71,544

diphosphoinositol polyphosphate catabolic process

biological_process

The chemical reactions and pathways resulting in the breakdown of a diphosphoinositol polyphosphate, 1,2,3,4,5,6-cyclohexanehexol with one or more diphosphate groups and multiple monophosphate groups attached.

[ "GOC:mah", "PMID:12387729" ]

null

[ "diphosphoinositol polyphosphate breakdown", "diphosphoinositol polyphosphate catabolism", "diphosphoinositol polyphosphate degradation" ]

[ "EXACT", "EXACT", "EXACT" ]

[]

[ "GO:0071543", "GO:0071545" ]

[]

[ "GO:0071543", "GO:0071545" ]

[]

mah

2010-01-12T05:07:10Z

false

true

6

GO:0071545

71,545

inositol phosphate catabolic process

biological_process

The chemical reactions and pathways resulting in the breakdown of an inositol phosphate, 1,2,3,4,5,6-cyclohexanehexol, with one or more phosphate groups attached.

[ "GOC:mah" ]

null

[ "inositol phosphate breakdown", "inositol phosphate catabolism", "inositol phosphate degradation", "myo-inositol phosphate catabolic process" ]

[ "EXACT", "EXACT", "EXACT", "NARROW" ]

[]

[ "GO:0043647", "GO:0046174", "GO:0046434" ]

[]

[ "GO:0043647", "GO:0046174", "GO:0046434" ]

[]

mah

2010-01-12T05:07:45Z

false

true

7

GO:0071546

71,546

pi-body

cellular_component

A P granule that contains the PIWIL2-TDRD1 module, a set of proteins that act in the primary piRNA pathway. The pi-body corresponds to the cementing material between mitochondria found in gonocytes.

[ "GOC:sp", "PMID:20011505" ]

null

[ "intermitochondrial cement" ]

[ "EXACT" ]

[]

[ "GO:0043186" ]

[]

[ "GO:0043186" ]

[]

mah

2010-01-12T05:44:12Z

false

true

5

GO:0071547

71,547

piP-body

cellular_component

A P granule that contains the PIWIL4-TDRD9 module, a set of proteins that act in the secondary piRNA pathway.

[ "GOC:sp", "PMID:20011505" ]

null

[]

[ "GO:0043186" ]

[]

[ "GO:0043186" ]

[]

mah

2010-01-12T05:47:47Z

false

true

5

GO:0071548

71,548

response to dexamethasone

biological_process

Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a dexamethasone stimulus.

[ "GOC:mah", "GOC:yaf" ]

null

[ "response to dexamethasone stimulus" ]

[ "EXACT" ]

[]

[ "GO:0051384", "GO:1901654" ]

[]

[ "GO:0051384", "GO:1901654" ]

[]

mah

2010-01-13T01:24:40Z

false

true

4

GO:0071550

71,550

death-inducing signaling complex assembly

biological_process

A process of protein complex assembly in which the arrangement and bonding together of the set of components that form the protein complex is mediated by a death domain (DD) interaction, as part of the extrinsic apoptotic signaling pathway.

[ "GOC:amm", "GOC:mtg_apoptosis", "InterPro:IPR000488" ]

null

[ "DD-mediated complex assembly", "death domain-mediated complex assembly", "death domain-mediated complex assembly involved in extrinsic apoptotic pathway", "death-inducing signaling complex formation", "death-inducing signalling complex assembly", "DISC assembly", "DISC formation" ]

[ "EXACT", "EXACT", "EXACT", "EXACT", "EXACT", "EXACT", "EXACT" ]

[]

[ "Reactome:R-HSA-5357786 \"TNFR1-induced proapoptotic signaling\"" ]

[ "GO:0065003" ]

[ "part_of GO:0097191" ]

[ "part_of" ]

[ "GO:0097191" ]

[ "GO:0065003", "GO:0097191" ]

[]

mah

2010-01-13T02:48:38Z

false

true

2

GO:0071552

71,552

obsolete RIP homotypic interaction motif-mediated complex assembly

biological_process

OBSOLETE. A process of protein complex assembly in which the arrangement and bonding together of the set of components that form the protein complex is mediated by a RIP homotypic interaction motif (RHIM) interaction.

[ "GOC:amm", "PMID:11734559" ]

This term was obsoleted because it represented a molecular function (binding), not a biological process. The term represented a domain involved in protein-protein interactions, but no necessarily the process of assembling a complex.

[ "RHIM-mediated complex assembly" ]

[ "EXACT" ]

[]

mah

2010-01-13T03:08:30Z

true

5

GO:0071553

71,553

G protein-coupled pyrimidinergic nucleotide receptor activity

molecular_function

Combining with a pyrimidine nucleotide and transmitting the signal across the membrane by activating an associated G-protein; promotes the exchange of GDP for GTP on the alpha subunit of a heterotrimeric G-protein complex.

[ "GOC:sl", "PMID:10736418", "PMID:12369950", "PMID:15796906" ]

null

[ "G protein coupled pyrimidinergic nucleotide receptor activity", "G-protein coupled pyrimidinergic nucleotide receptor activity", "pyrimidinergic nucleotide receptor activity, G protein coupled", "pyrimidinergic nucleotide receptor activity, G-protein coupled" ]

[ "EXACT", "EXACT", "EXACT", "EXACT" ]

[]

[ "GO:0004930", "GO:0016502" ]

[ "has_part GO:0019103" ]

[ "has_part" ]

[ "GO:0019103" ]

[ "GO:0004930", "GO:0016502", "GO:0019103" ]

[]

mah

2010-01-13T03:13:22Z

false

true

7

GO:0071555

71,555

cell wall organization

biological_process

A process that results in the assembly, arrangement of constituent parts, or disassembly of the cell wall, the rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis.

[ "GOC:mah" ]

null

[ "cell wall organisation", "cell wall organisation in other organism", "cell wall organization and biogenesis", "cell wall organization at cellular level", "cell wall organization in other organism", "cellular cell wall organisation", "cellular cell wall organization" ]

[ "EXACT", "EXACT", "RELATED", "EXACT", "EXACT", "EXACT", "EXACT" ]

[ "GO:0007047", "GO:0044234" ]

[ "goslim_candida", "goslim_pir" ]

[]

[ "GO:0045229", "GO:0071554" ]

[]

[ "GO:0045229", "GO:0071554" ]

[]

mah

2010-01-13T03:33:07Z

false

true

7

GO:0071556

71,556

obsolete integral component of lumenal side of endoplasmic reticulum membrane

cellular_component

OBSOLETE. The component of the endoplasmic reticulum membrane consisting of the gene products that penetrate only the lumenal side of the membrane.

[ "GOC:dos", "GOC:mah" ]

This term was obsoleted because it represents protein topology, not a cellular component.

[ "integral to ER membrane, lumenal side", "integral to lumenal leaflet of endoplasmic reticulum membrane", "integral to lumenal side of endoplasmic reticulum membrane", "integral to lumenal side of ER membrane" ]

[ "EXACT", "EXACT", "NARROW", "EXACT" ]

[]

[ "GO:0098553" ]

[]

[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/23424\" xsd:anyURI" ]

mah

2010-01-15T10:56:58Z

true

9

GO:0071557

71,557

obsolete histone H3-K27 demethylation

biological_process

OBSOLETE. The modification of histone H3 by the removal of a methyl group from lysine at position 27 of the histone.

[ "GOC:sp", "PMID:20023638" ]

This term was obsoleted because it represents a molecular function.

[ "H3K27 demethylation" ]

[ "RELATED" ]

[]

[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/24294\" xsd:anyURI" ]

mah

2010-01-15T10:59:50Z

true

5

GO:0071558

71,558

histone H3K27me2/H3K27me3 demethylase activity

molecular_function

Catalysis of the removal of a methyl group from a tri- or a dimethyl-lysine residue at position 27 of the histone H3 protein. This is a dioxygenase reaction that is dependent on Fe(II) and 2-oxoglutarate.

[ "GOC:sp", "PMID:20622853" ]

Comment: Note that the residue position corresponds to the canonical human H3 histone (UniProtKB:P84243); this residue is conserved across all eukaryotes. Residue 1 is the first residue following removal of the initiating Methionine (Met). Note that each histone is encoded by multiple genes, and sequences may vary acro...

[ "histone demethylase activity (H3-K27 specific)", "histone H3-tri/di-methyl-lysine-27 demethylase activity", "histone H3K27me2 demethylase activity", "histone H3K27me3 demethylase activity" ]

[ "BROAD", "EXACT", "RELATED", "RELATED" ]

[]

[ "EC:1.14.11.68", "Reactome:R-HSA-3222593 \"KDM6B demethylates H3K27me3 on p16INK4A promoter\"", "Reactome:R-HSA-5617431 \"Retinoic acid activates HOXA1 chromatin\"", "Reactome:R-HSA-5617887 \"HOXC4 chromatin is activated\"", "Reactome:R-HSA-9822914 \"KDM6B (JMJD3) demethylates histone H3 trimethyllysine-27 ...

[ "GO:0016706", "GO:0141052" ]

[]

[ "GO:0016706", "GO:0141052" ]

[]

[ "skos:exactMatch EC:1.14.11.68", "skos:exactMatch RHEA:60224", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/30193\" xsd:anyURI", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/30578\" xsd:anyURI" ]

mah

2010-01-15T11:33:17Z

false

true

3

GO:0071559

71,559

response to transforming growth factor beta

biological_process

Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a transforming growth factor beta stimulus.

[ "GOC:mah" ]

null

[ "response to TGF-beta stimulus", "response to TGFbeta stimulus", "response to transforming growth factor beta stimulus" ]

[ "EXACT", "EXACT", "EXACT" ]

[]

[ "GO:0070848" ]

[]

[ "GO:0070848" ]

[]

mah

2010-01-20T11:49:59Z

false

true

5

GO:0071560

71,560

cellular response to transforming growth factor beta stimulus

biological_process

Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a transforming growth factor beta stimulus.

[ "GOC:ecd", "PMID:15451575" ]

null

[ "cellular response to TGF-beta stimulus", "cellular response to TGFbeta stimulus" ]

[ "EXACT", "EXACT" ]

[]

[ "GO:0071363", "GO:0071559" ]

[]

[ "GO:0071363", "GO:0071559" ]

[]

mah

2010-01-20T11:51:18Z

false

true

7

GO:0071561

71,561

nucleus-vacuole junction

cellular_component

An organelle membrane contact site formed between the vacuole membrane and the outer nuclear membrane. In S. cerevisiae these contacts are mediated through direct physical interaction between Vac8p and Nvj1p.

[ "GOC:jp", "PMID:16709156", "PMID:16806880" ]

null

[ "nucleus-vacuole membrane contact site", "NV junction", "NVJ" ]

[ "EXACT", "EXACT", "EXACT" ]

[]

[ "GO:0044232" ]

[]

[ "GO:0044232" ]

[]

mah

2010-01-20T02:09:42Z

false

true

1

GO:0071562

71,562

nucleus-vacuole junction assembly

biological_process

The aggregation, arrangement and bonding together of a set of components to form a nucleus-vacuole junction (NVJ), membrane contact sites formed between the vacuole membrane and the outer nuclear membrane. In S. cerevisiae these contacts are mediated through direct physical interaction between Vac8p and Nvj1p. The NVJ ...

[ "GOC:jp", "PMID:16709156", "PMID:28533415" ]

null

[ "nucleus-vacuole junction formation", "NV junction assembly", "NV junction formation", "NVJ assembly", "NVJ formation" ]

[ "EXACT", "EXACT", "EXACT", "EXACT", "EXACT" ]

[]

[ "GO:0022607", "GO:0140056" ]

[]

[ "GO:0022607", "GO:0140056" ]

[]

[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/23242\" xsd:anyURI" ]

mah

2010-01-20T02:16:36Z

false

true

4

GO:0071563

71,563

Myo2p-Vac17p-Vac8p transport complex

cellular_component

A protein complex that is involved in transport of vacuoles to a newly formed daughter cell. In yeast, this complex is composed of Myo2p, Vac17p, and Vac8p.

[ "GOC:jp", "PMID:12594460" ]

null

[]

[ "GO:0032991" ]

[ "part_of GO:0005737" ]

[ "part_of" ]

[ "GO:0005737" ]

[ "GO:0005737", "GO:0032991" ]

[]

mah

2010-01-20T03:03:24Z

false

true

6

GO:0071564

71,564

npBAF complex

cellular_component

A SWI/SNF-type complex that is found in neural stem or progenitor cells, and in human contains actin and proteins encoded by the ARID1A/BAF250A or ARID1B/BAF250B, SMARCD1/BAF60A, SMARCD3/BAF60C, SMARCA2/BRM/BAF190B, SMARCA4/BRG1/BAF190A, SMARCB1/BAF47, SMARCC1/BAF155, SMARCE1/BAF57, SMARCC2/BAF170, PHF10/BAF45A, ACTL6A...

[ "GOC:mah", "GOC:ss", "PMID:17640523" ]

null

[]

[ "GO:0070603" ]

[]

[ "GO:0070603" ]

[]

mah

2010-01-20T03:33:42Z

false

true

5

GO:0071565

71,565

nBAF complex

cellular_component

A SWI/SNF-type complex that is found in post-mitotic neurons, and in human contains actin and proteins encoded by the ARID1A/BAF250A or ARID1B/BAF250B, SMARCD1/BAF60A, SMARCD3/BAF60C, SMARCA2/BRM/BAF190B, SMARCA4/BRG1/BAF190A, SMARCB1/BAF47, SMARCC1/BAF155, SMARCE1/BAF57, SMARCC2/BAF170, DPF1/BAF45B, DPF3/BAF45C, ACTL6...

[ "GOC:mah", "GOC:ss", "PMID:17640523" ]

null

[]

[ "GO:0070603" ]

[]

[ "GO:0070603" ]

[]

mah

2010-01-20T03:41:19Z

false

true

4

GO:0071566

71,566

UFM1 activating enzyme activity

molecular_function

Catalysis of the activation of the small ubiquitin-related modifier UFM1, through the formation of an ATP-dependent high-energy thiolester bond.

[ "GOC:sp", "PMID:20018847" ]

null

[]

[ "GO:0008641" ]

[]

[ "GO:0008641" ]

[]

mah

2010-01-20T04:06:05Z

false

true

9

GO:0071567

71,567

deUFMylase activity

molecular_function

A thiol-dependent isopeptidase activity that cleaves UFM1 from a target protein to which it is conjugated.

[ "GOC:sp", "PMID:17182609", "PMID:20018847" ]

null

[ "UFM1 hydrolase activity" ]

[ "EXACT" ]

[]

[ "GO:0008234", "GO:0019783" ]

[]

[ "GO:0008234", "GO:0019783" ]

[]

mah

2010-01-20T04:08:34Z

false

true

2

GO:0071568

71,568

UFM1 transferase activity

molecular_function

Catalysis of the transfer of UFM1 from one protein to another via the reaction X-UFM1 + Y = Y-UFM1 + X, where both X-UFM1 and Y-UFM1 are covalent linkages.

[ "GOC:sp", "PMID:20018847" ]

null

[]

[ "GO:0019787" ]

[]

[ "GO:0019787" ]

[]

mah

2010-01-20T04:10:11Z

false

true

2

GO:0071569

71,569

protein ufmylation

biological_process

Covalent attachment of the ubiquitin-like protein UFM1 to another protein.

[ "GOC:vw", "PMID:20018847" ]

null

[]

[ "GO:0032446" ]

[]

[ "GO:0032446" ]

[]

mah

2010-01-20T04:12:01Z

false

true

9

GO:0071570

71,570

cement gland development

biological_process

The process whose specific outcome is the progression of the cement gland over time, from its formation to the mature structure. The cement gland is a simple mucus-secreting organ positioned at the anterior of amphibious embryos. The cement gland attaches the newly hatched embryo to a support before the hatchling can s...

[ "GOC:bf" ]

null

[]

[ "GO:0048732" ]

[]

[ "GO:0048732" ]

[]

mah

2010-01-20T04:31:04Z

false

true

1

GO:0071571

71,571

obsolete LRR domain-mediated complex assembly

biological_process

OBSOLETE. A process of protein complex assembly in which the arrangement and bonding together of the set of components that form the protein complex is mediated by an LRR (leucine-rich repeat) domain interaction.

[ "GOC:amm", "InterPro:IPR001611" ]

This term was obsoleted because it represented a molecular function (binding), not a biological process. The term represented a domain involved in protein-protein interactions, but no necessarily the process of assembling a complex.

[ "leucine-rich repeat domain-mediated complex assembly" ]

[ "EXACT" ]

[]

mah

2010-01-20T04:33:49Z

true

8

GO:0071572

71,572

obsolete histone H3-K56 deacetylation

biological_process

OBSOLETE. The modification of histone H3 by the removal of an acetyl group from lysine at position 56 of the histone.

[ "GOC:mah" ]

This term was obsoleted because it represents a molecular function.

[]

[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/24294\" xsd:anyURI" ]

mah

2010-01-20T04:50:03Z

true

4

GO:0071573

71,573

shelterin complex assembly

biological_process

The aggregation, arrangement and bonding together of a set of components to form a shelterin complex. A shelterin complex is a nuclear telomere cap complex that is formed by the association of telomeric ssDNA- and dsDNA-binding proteins with telomeric DNA, and is involved in telomere protection and recruitment of telom...

[ "GOC:mah", "GOC:vw" ]

null

[ "Pot1 complex assembly", "Pot1-Tpz1 complex assembly", "shelterin complex formation", "telosome assembly" ]

[ "RELATED", "RELATED", "RELATED", "EXACT" ]

[]

[ "GO:0065004" ]

[ "part_of GO:0032200" ]

[ "part_of" ]

[ "GO:0032200" ]

[ "GO:0032200", "GO:0065004" ]

[]

mah

2010-01-26T01:45:20Z

false

true

1

GO:0071574

71,574

protein localization to medial cortex

biological_process

A process in which a protein is transported to, or maintained in, the medial cortex.

[ "GOC:mah" ]

null

[ "protein localisation to medial cortex" ]

[ "EXACT" ]

[]

[ "GO:0072697", "GO:0072741" ]

[]

[ "GO:0072697", "GO:0072741" ]

[]

mah

2010-01-26T05:17:50Z

false

true

6

GO:0071575

71,575

obsolete integral component of external side of plasma membrane

cellular_component

OBSOLETE. The component of the plasma membrane consisting of the gene products that penetrate only the external side of the membrane.

[ "GOC:dos", "GOC:mah" ]

This term was obsoleted because it represents protein topology, not a cellular component.

[ "integral to external leaflet of plasma membrane", "integral to external side of plasma membrane" ]

[ "EXACT", "NARROW" ]

[]

[ "GO:0009897" ]

[]

[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/23424\" xsd:anyURI" ]

mah

2010-01-26T05:20:28Z

true

2

GO:0071576

71,576

tetrahydrodictyopterin binding

molecular_function

Binding to tetrahydrodictyopterin, the pterin 2-amino-6-[(1R,2R)-1,2-dihydroxypropyl]-5,6,7,8-tetrahydropteridin-4(3H)-one.

[ "GOC:mah", "GOC:vw" ]

null

[ "D-threo-tetrahydrobiopterin", "DH4 binding" ]

[ "EXACT", "EXACT" ]

[]

[ "GO:0034617" ]

[]

[ "GO:0034617" ]

[]

mah

2010-01-26T05:24:59Z

false

true

5

GO:0071577

71,577

zinc ion transmembrane transport

biological_process

A process in which a zinc II ion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore.

[ "GOC:BHF", "GOC:mah" ]

Note that this term is not intended for use in annotating lateral movement within membranes.

[ "zinc II ion transmembrane transport", "zinc ion membrane transport", "zinc transmembrane transport" ]

[ "EXACT", "EXACT", "EXACT" ]

[]

[ "Reactome:R-HSA-435354 \"Zinc transporters\"" ]

[ "GO:0006829", "GO:0098655" ]

[]

[ "GO:0006829", "GO:0098655" ]

[]

mah

2010-01-28T02:17:12Z

false

true

7

GO:0071578

71,578

zinc ion import across plasma membrane

biological_process

The directed movement of zinc(2+) ions from outside of a cell, across the plasma membrane and into the cytosol.

[ "GOC:vw", "PMID:18637840" ]

null

[ "high-affinity zinc II ion transmembrane import", "high-affinity zinc II ion transport", "low-affinity zinc II ion transport", "zinc II ion plasma membrane import", "zinc II ion transmembrane import", "zinc import", "zinc ion import into cell", "zinc ion transmembrane import", "zinc uptake" ]

[ "NARROW", "NARROW", "NARROW", "EXACT", "EXACT", "EXACT", "EXACT", "RELATED", "EXACT" ]

[ "GO:0006830", "GO:0006831", "GO:0044749", "GO:0140160" ]

[]

[ "GO:0071577", "GO:0098659" ]

[]

[ "GO:0071577", "GO:0098659" ]

[]

jl

2010-01-28T02:22:02Z

false

true

9

GO:0071579

71,579

regulation of zinc ion transport

biological_process

Any process that modulates the frequency, rate or extent of the directed movement of zinc ions (Zn2+) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.

[ "GOC:BHF", "GOC:mah" ]

null

[]

[ "GO:0010959" ]

[ "regulates GO:0006829" ]

[ "regulates" ]

[ "GO:0006829" ]

[ "GO:0006829", "GO:0010959" ]

[ "GO:0065007", "regulates GO:0006829" ]

[]

mah

2010-01-28T03:02:15Z

false

true

7

GO:0071580

71,580

regulation of zinc ion transmembrane transport

biological_process

Any process that modulates the frequency, rate or extent of the directed movement of zinc ions (Zn2+) from one side of a membrane to the other.

[ "GOC:BHF", "GOC:mah" ]

null

[ "regulation of zinc ion membrane transport" ]

[ "EXACT" ]

[]

[ "GO:0071579", "GO:1904062" ]

[ "regulates GO:0071577" ]

[ "regulates" ]

[ "GO:0071577" ]

[ "GO:0071577", "GO:0071579", "GO:1904062" ]

[ "GO:0065007", "regulates GO:0071577" ]

[]

mah

2010-01-28T03:05:53Z

false

true

9

GO:0071581

71,581

regulation of zinc ion transmembrane import

biological_process

Any process that modulates the frequency, rate or extent of zinc ion import.

[ "GOC:BHF", "GOC:mah" ]

null

[]

[ "GO:0071580" ]

[ "regulates GO:0071578" ]

[ "regulates" ]

[ "GO:0071578" ]

[ "GO:0071578", "GO:0071580" ]

[ "GO:0065007", "regulates GO:0071578" ]

[]

mah

2010-01-28T03:09:19Z

false

true

9

GO:0071582

71,582

negative regulation of zinc ion transport

biological_process

Any process that stops, prevents, or reduces the frequency, rate or extent of the directed movement of zinc ions (Zn2+) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.

[ "GOC:BHF", "GOC:mah" ]

null

[]

[ "GO:0043271", "GO:0071579" ]

[ "negatively_regulates GO:0006829" ]

[ "negatively_regulates" ]

[ "GO:0006829" ]

[ "GO:0006829", "GO:0043271", "GO:0071579" ]

[ "GO:0065007", "negatively_regulates GO:0006829" ]

[]

mah

2010-01-28T03:14:25Z

false

true

5

GO:0071583

71,583

negative regulation of zinc ion transmembrane transport

biological_process

Any process that stops, prevents, or reduces the frequency, rate or extent of the directed movement of zinc ions (Zn2+) from one side of a membrane to the other.

[ "GOC:BHF", "GOC:mah" ]

null

[ "negative regulation of zinc ion membrane transport" ]

[ "EXACT" ]

[]

[ "GO:0071580", "GO:0071582", "GO:1904063" ]

[ "negatively_regulates GO:0071577" ]

[ "negatively_regulates" ]

[ "GO:0071577" ]

[ "GO:0071577", "GO:0071580", "GO:0071582", "GO:1904063" ]

[ "GO:0065007", "negatively_regulates GO:0071577" ]

[]

mah

2010-01-28T03:15:54Z

false

true

8

GO:0071584

71,584

negative regulation of zinc ion transmembrane import

biological_process

Any process that stops, prevents, or reduces the frequency, rate or extent of zinc ion import.

[ "GOC:BHF", "GOC:mah" ]

null

[]

[ "GO:0071581", "GO:0071583" ]

[ "negatively_regulates GO:0071578" ]

[ "negatively_regulates" ]

[ "GO:0071578" ]

[ "GO:0071578", "GO:0071581", "GO:0071583" ]

[ "GO:0065007", "negatively_regulates GO:0071578" ]

[]

mah

2010-01-28T03:17:21Z

false

true

4

GO:0071585

71,585

detoxification of cadmium ion

biological_process

Any process that reduces or removes the toxicity of cadmium ion. These may include transport of cadmium away from sensitive areas and to compartments or complexes whose purpose is sequestration of cadmium ion.

[ "GOC:BHF", "GOC:kmv", "PMID:16741752" ]

null

[]

[ "GO:0061687" ]

[ "part_of GO:1990170" ]

[ "part_of" ]

[ "GO:1990170" ]

[ "GO:0061687", "GO:1990170" ]

[]

mah

2010-01-28T03:38:48Z

false

true

7

GO:0071586

71,586

CAAX-box protein processing

biological_process

The second process in a series of specific posttranslational modifications to the CAAX box region of CAAX box proteins, in which the last three amino acids of the protein (AAX) are removed by proteolysis.

[ "GOC:mah" ]

null

[]

[ "GO:0016485" ]

[ "part_of GO:0080120" ]

[ "part_of" ]

[ "GO:0080120" ]

[ "GO:0016485", "GO:0080120" ]

[]

mah

2010-01-28T04:42:45Z

false

true

4

GO:0071587

71,587

obsolete CAAX-box protein modification

biological_process

OBSOLETE. The covalent alteration of one or more amino acid residues within the CAAX box region of CAAX box proteins.

[ "GOC:mah" ]

This term was obsoleted because it represents a molecular function.

[]

[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/28482\" xsd:anyURI" ]

mah

2010-01-28T04:48:56Z

true

3

GO:0071588

71,588

hydrogen peroxide mediated signaling pathway

biological_process

The series of molecular signals mediated by the detection of hydrogen peroxide (H2O2).

[ "GOC:mah", "PMID:17043891" ]

null

[ "H2O2 mediated signaling pathway", "hydrogen peroxide mediated signalling pathway" ]

[ "EXACT", "EXACT" ]

[]

[ "GO:0007165" ]

[]

[ "GO:0007165" ]

[]

mah

2010-01-29T11:18:58Z

false

true

9

GO:0071589

71,589

pyridine nucleoside biosynthetic process

biological_process

The chemical reactions and pathways resulting in the formation of any pyridine nucleoside, one of a family of organic molecules consisting of a pyridine base covalently bonded to a sugar, usually ribose.

[ "GOC:mah" ]

null

[ "pyridine nucleoside anabolism", "pyridine nucleoside biosynthesis", "pyridine nucleoside formation", "pyridine nucleoside synthesis" ]

[ "EXACT", "EXACT", "EXACT", "EXACT" ]

[]

[ "GO:0009163", "GO:0070637", "GO:0072525" ]

[]

[ "GO:0009163", "GO:0070637", "GO:0072525" ]

[]

mah

2010-01-29T11:35:30Z

false

true

4

GO:0071590

71,590

nicotinamide riboside biosynthetic process

biological_process

The chemical reactions and pathways resulting in the formation of nicotinamide riboside, the product of the formation of a glycosidic bond between ribose and nicotinamide.

[ "GOC:mah", "PMID:19846558" ]

null

[ "N-ribosylnicotinamide biosynthetic process", "nicotinamide riboside anabolism", "nicotinamide riboside biosynthesis", "nicotinamide riboside formation", "nicotinamide riboside synthesis" ]

[ "EXACT", "EXACT", "EXACT", "EXACT", "EXACT" ]

[]

[ "GO:0046495", "GO:0071589" ]

[]

[ "GO:0046495", "GO:0071589" ]

[]

mah

2010-01-29T11:39:27Z

false

true

4

GO:0071591

71,591

obsolete nicotinic acid riboside metabolic process

biological_process

OBSOLETE. The chemical reactions and pathways involving nicotinic acid riboside, the product of the formation of a glycosidic bond between ribose and nicotinic acid.

[ "GOC:mah", "PMID:19846558" ]

This term was obsoleted because it is an unnecessary grouping class.

[ "D-ribosylnicotinic acid metabolic process", "nicotinic acid riboside metabolism" ]

[ "EXACT", "EXACT" ]

[]

[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/30524\" xsd:anyURI" ]

mah

2010-01-29T11:50:42Z

true

5

GO:0071592

71,592

nicotinic acid riboside biosynthetic process

biological_process

The chemical reactions and pathways resulting in the formation of nicotinic acid riboside, the product of the formation of a glycosidic bond between ribose and nicotinic acid.

[ "GOC:mah", "PMID:19846558" ]

null

[ "D-ribosylnicotinic acid biosynthetic process", "nicotinic acid riboside anabolism", "nicotinic acid riboside biosynthesis", "nicotinic acid riboside formation", "nicotinic acid riboside synthesis" ]

[ "EXACT", "EXACT", "EXACT", "EXACT", "EXACT" ]

[]

[ "GO:0071589" ]

[]

[ "GO:0071589" ]

[]

mah

2010-01-29T12:01:25Z

false

true

4

GO:0071593

71,593

lymphocyte aggregation

biological_process

The adhesion of one lymphocyte to one or more other lymphocytes via adhesion molecules.

[ "GOC:sl" ]

null

[]

[ "GO:0070486" ]

[]

[ "GO:0070486" ]

[]

mah

2010-01-29T01:37:30Z

false

true

8

GO:0071594

71,594

thymocyte aggregation

biological_process

The adhesion of one thymocyte (an immature T cell) to one or more other thymocytes via adhesion molecules.

[ "GOC:sl", "PMID:1382990" ]

null

[ "immature T cell aggregation", "immature T-cell aggregation", "immature T-lymphocyte aggregation", "T cell precursor aggregation", "thymic lymphocyte aggregation" ]

[ "BROAD", "BROAD", "EXACT", "EXACT", "EXACT" ]

[]

[ "GO:0070489" ]

[]

[ "GO:0070489" ]

[]

mah

2010-01-29T01:38:49Z

false

true

9

GO:0071595

71,595

Nem1-Spo7 phosphatase complex

cellular_component

A protein serine/threonine phosphatase complex that is involved in nuclear envelope organization, and contains proteins known in budding yeast as Nem1p and Spo7p.

[ "GOC:mah", "PMID:9822591" ]

null

[]

[ "GO:0008287", "GO:0098796" ]

[ "part_of GO:0042175" ]

[ "part_of" ]

[ "GO:0042175" ]

[ "GO:0008287", "GO:0042175", "GO:0098796" ]

[]

mah

2010-01-29T02:17:29Z

false

true

1

GO:0071596

71,596

ubiquitin-dependent protein catabolic process via the N-end rule pathway

biological_process

The chemical reactions and pathways resulting in the breakdown of a protein or peptide covalently tagged with ubiquitin, via the N-end rule pathway. In the N-end rule pathway, destabilizing N-terminal residues (N-degrons) in substrates are recognized by E3 ligases (N-recognins), whereupon the substrates are linked to u...

[ "GOC:mah", "GOC:rb", "PMID:19246002", "PMID:9112437" ]

null

[ "ubiquitin-dependent protein breakdown via the N-end rule pathway", "ubiquitin-dependent protein catabolism via the N-end rule pathway", "ubiquitin-dependent protein degradation via the N-end rule pathway" ]

[ "EXACT", "EXACT", "EXACT" ]

[]

[ "GO:0043161" ]

[]

[ "GO:0043161" ]

[]

mah

2010-01-29T03:01:09Z

false

true

4

GO:0071597

71,597

cellular birth scar

cellular_component

Crater-like ring of chitinous scar tissue located on the surface of the daughter cell, in budding fungi, at the site of separation from the mother cell. It is formed after the newly emerged daughter cell separates, thereby marking the site of cytokinesis and septation.

[ "GOC:mcc", "PMID:16672383", "PMID:7730409" ]

null

[]

[ "GO:0110165" ]

[ "part_of GO:0009277" ]

[ "part_of" ]

[ "GO:0009277" ]

[ "GO:0009277", "GO:0110165" ]

[]

mah

2010-02-02T02:42:44Z

false

true

3

GO:0071598

71,598

neuronal ribonucleoprotein granule

cellular_component

A ribonucleoprotein complex that is found in the cytoplasm of axons and dendrites, and transports translationally silenced mRNAs to dendritic synapses, where they are released and translated in response to specific exogenous stimuli.

[ "GOC:BHF", "GOC:curators", "GOC:mah", "PMID:19015237", "PMID:20368989" ]

null

[ "neuronal RNA granule", "neuronal RNP granule" ]

[ "NARROW", "EXACT" ]

[]

[ "GO:0036464" ]

[ "part_of GO:0120111" ]

[ "part_of" ]

[ "GO:0120111" ]

[ "GO:0036464", "GO:0120111" ]

[]

mah

2010-02-04T04:01:57Z

false

true

1

GO:0071599

71,599

otic vesicle development

biological_process

The process whose specific outcome is the progression of the otic vesicle over time, from its formation to the mature structure. The otic vesicle is a transient embryonic structure formed during development of the vertebrate inner ear.

[ "GOC:mah" ]

null

[]

[ "GO:0007423", "GO:0035295", "GO:0048839", "GO:0060429" ]

[]

[ "GO:0007423", "GO:0035295", "GO:0048839", "GO:0060429" ]

[]

mah

2010-02-04T04:07:17Z

false

true

1

GO:0071600

71,600

otic vesicle morphogenesis

biological_process

The process in which the anatomical structures of the otic vesicle are generated and organized. The otic vesicle is a transient embryonic structure formed during development of the vertebrate inner ear.

[ "GOC:mah" ]

null

[]

[ "GO:0042472", "GO:0048562", "GO:0060562" ]

[ "part_of GO:0071599" ]

[ "part_of" ]

[ "GO:0071599" ]

[ "GO:0042472", "GO:0048562", "GO:0060562", "GO:0071599" ]

[]

mah

2010-02-04T04:07:27Z

false

true

6

GO:0071601

71,601

sphere organelle

cellular_component

A nuclear body that is found in the germinal vesicles of amphibian oocytes, and consist of three major parts: a remarkably spherical body about 5-10 pm in diameter, smaller spherical or nearly spherical granules on the surface, and inclusions of various sizes that strongly resemble the surface granules. The parts of th...

[ "PMID:7758244", "PMID:8349728" ]

null

[]

[ "GO:0016604" ]

[]

[ "GO:0016604" ]

[]

mah

2010-02-04T04:26:41Z

false

true

5

GO:0071602

71,602

phytosphingosine biosynthetic process

biological_process

The chemical reactions and pathways resulting in the formation of phytosphingosine, (2S,3S,4R)-2-aminooctadecane-1,3,4-triol.

[ "GOC:mah" ]

null

[ "phytosphingosine anabolism", "phytosphingosine biosynthesis", "phytosphingosine formation", "phytosphingosine synthesis" ]

[ "EXACT", "EXACT", "EXACT", "EXACT" ]

[]

[ "GO:0006671", "GO:0046173", "GO:0046520" ]

[]

[ "GO:0006671", "GO:0046173", "GO:0046520" ]

[]

mah

2010-02-04T05:15:59Z

false

true

9

GO:0071603

71,603

endothelial cell-cell adhesion

biological_process

The attachment of an endothelial cell to another endothelial cell via adhesion molecules.

[ "GOC:BHF" ]

null

[]

[ "GO:0090136" ]

[]

[ "GO:0090136" ]

[]

mah

2010-02-04T05:21:30Z

false

true

7

GO:0071604

71,604

transforming growth factor beta production

biological_process

The appearance of any member of the transforming growth factor-beta family of cytokines due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. Transforming growth factor-beta family members include TGF-B1, TGF-B2, and TGF-B3.

[ "GOC:add", "GOC:rv", "PMID:16891311", "PMID:2022183" ]

null

[ "TGF-B production", "TGF-beta production", "TGFb production", "TGFbeta production", "transforming growth factor-beta production", "transforming growth factor-beta secretion" ]

[ "EXACT", "EXACT", "EXACT", "EXACT", "EXACT", "NARROW" ]

[ "GO:0038044" ]

[]

[ "GO:0001816" ]

[]

[ "GO:0001816" ]

[]

mah

2010-02-05T03:56:57Z

false

true

7

GO:0071605

71,605

monocyte chemotactic protein-1 production

biological_process

The appearance of monocyte chemotactic protein-1 due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels.

[ "GOC:add", "GOC:rv" ]

null

[ "CCL2 production", "MCP-1 production" ]

[ "EXACT", "EXACT" ]

[]

[ "gocheck_do_not_annotate" ]

[]

[ "GO:0032602" ]

[]

[ "GO:0032602" ]

[]

mah

2010-02-05T04:09:53Z

false

true

1

GO:0071606

71,606

chemokine (C-C motif) ligand 4 production

biological_process

The appearance of chemokine (C-C motif) ligand 4 due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels.

[ "GOC:add", "GOC:rv" ]

null

[ "CCL4 production", "macrophage inflammatory protein production", "MIP-1b production" ]

[ "EXACT", "BROAD", "EXACT" ]

[]

[ "gocheck_do_not_annotate" ]

[]

[ "GO:0032602" ]

[]

[ "GO:0032602" ]

[]

mah

2010-02-05T04:16:42Z

false

true

8

GO:0071607

71,607

macrophage inflammatory protein-1 gamma production

biological_process

The appearance of macrophage inflammatory protein-1 gamma due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels.

[ "GOC:add", "GOC:rv" ]

null

[ "CCL9 production", "chemokine (C-C motif) ligand 9 production", "MIP-1g production" ]

[ "EXACT", "EXACT", "EXACT" ]

[]

[ "gocheck_do_not_annotate" ]

[]

[ "GO:0032602" ]

[]

[ "GO:0032602" ]

[]

mah

2010-02-05T04:19:52Z

false

true

1

GO:0071608

71,608

macrophage inflammatory protein-1 alpha production

biological_process

The appearance of macrophage inflammatory protein 1 alpha due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels.

[ "GOC:add", "GOC:rv" ]

null

[ "CCL3 production", "chemokine (C-C motif) ligand 3 production", "macrophage inflammatory protein production", "MIP-1a production" ]

[ "EXACT", "EXACT", "BROAD", "EXACT" ]

[]

[ "gocheck_do_not_annotate" ]

[]

[ "GO:0032602" ]

[]

[ "GO:0032602" ]

[]

mah

2010-02-05T04:24:17Z

false

true

6

GO:0071611

71,611

granulocyte colony-stimulating factor production

biological_process

The appearance of granulocyte colony-stimulating factor due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels.

[ "GOC:add", "GOC:rv" ]

null

[ "colony stimulating factor 3 (granulocyte) production", "CSF3 production", "filgrastim production", "G-CSF production", "granulocyte colony stimulating factor production", "lenograstim production", "pluripoietin production" ]

[ "EXACT", "EXACT", "EXACT", "EXACT", "EXACT", "EXACT", "EXACT" ]

[]

[ "gocheck_do_not_annotate" ]

[]

[ "GO:0001816" ]

[]

[ "GO:0001816" ]

[]

mah

2010-02-05T04:38:11Z

false

true

8

GO:0071612

71,612

IP-10 production

biological_process

The appearance of IP-10 due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels.

[ "GOC:add", "GOC:rv" ]

null

[ "chemokine (C-C motif) ligand 10 production", "CXCL10 production" ]

[ "EXACT", "EXACT" ]

[]

[ "gocheck_do_not_annotate" ]

[]

[ "GO:0032602" ]

[]

[ "GO:0032602" ]

[]

mah

2010-02-05T04:43:56Z

false

true

9

GO:0071613

71,613

granzyme B production

biological_process

The appearance of granzyme B due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels.

[ "GOC:add", "GOC:rv" ]

Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select one of the 'regulation' children terms.

[]

[ "gocheck_do_not_annotate" ]

[]

[ "GO:0002440" ]

[]

[ "GO:0002440" ]

[]

mah

2010-02-05T04:47:15Z

false

true

3

GO:0071614

71,614

linoleic acid epoxygenase activity

molecular_function

Catalysis of an NADPH- and oxygen-dependent reaction that converts linoleic acid to a cis-epoxyoctadecenoic acid.

[ "GOC:BHF", "PMID:11042099" ]

null

[ "linoleic acid monooxygenase activity" ]

[ "EXACT" ]

[]

[ "GO:0004497", "GO:0016705" ]

[]

[ "GO:0004497", "GO:0016705" ]

[]

mah

2010-02-05T06:05:22Z

false

true

3

GO:0071615

71,615

obsolete oxidative deethylation

biological_process

OBSOLETE. The process of removing one or more ethyl groups from a molecule, involving the oxidation (i.e. electron loss) of one or more atoms in the substrate.

[ "GOC:BHF", "GOC:mah", "GOC:rl" ]

This term was obsoleted because it represents a molecular function.

[]

[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/20250\" xsd:anyURI" ]

mah

2010-02-05T06:11:41Z

true

4

GO:0071617

71,617

lysophospholipid acyltransferase activity

molecular_function

Catalysis of the transfer of acyl groups from an acyl-CoA to a lysophospholipid.

[ "GOC:cjk" ]

null

[]

[ "GO:0016747" ]

[]

[ "GO:0016747" ]

[]

mah

2010-02-08T04:53:37Z

false

true

8

GO:0071618

71,618

lysophosphatidylethanolamine acyltransferase activity

molecular_function

Catalysis of the transfer of acyl groups from an acyl-CoA to lysophosphatidylethanolamine.

[ "GOC:cjk" ]

null

[]

[ "GO:0071617" ]

[]

[ "GO:0071617" ]

[]

mah

2010-02-08T04:59:07Z

false

true

3

GO:0071619

71,619

obsolete phosphorylation of RNA polymerase II C-terminal domain serine 2 residues

biological_process

OBSOLETE. The process of introducing a phosphate group onto a serine residue at position 2 within the heptapeptide repeat (YSPTSPS) of the C-terminal domain of RNA polymerase II. Typically, phosphorylation of serine 2 (Ser2) occurs subsequent to phosphorylation of serine 5 and is thus seen in the middle and 3' ends of ...

[ "GOC:krc", "PMID:17079683" ]

This term was obsoleted because it represents a molecular function.

[]

[ "GO:0006366", "GO:0140834" ]

[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/19105\" xsd:anyURI" ]

mah

2010-02-09T02:37:02Z

true

3

GO:0071620

71,620

obsolete phosphorylation of RNA polymerase II C-terminal domain serine 5 residues

biological_process

OBSOLETE. The process of introducing a phosphate group onto a serine residue at position 5 within the heptapeptide repeat (YSPTSPS) of the C-terminal domain of RNA polymerase II. Typically, phosphorylation of serine 5 (Ser5) occurs near the 5' ends of genes. It is generally still observed in the middle of genes, overla...

[ "GOC:krc", "PMID:17079683" ]

This term was obsoleted because it represents a molecular function.

[]

[ "GO:0006366", "GO:0140836" ]

[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/19105\" xsd:anyURI" ]

mah

2010-02-09T02:39:52Z

true

8

GO:0071621

71,621

granulocyte chemotaxis

biological_process

The movement of a granulocyte in response to an external stimulus.

[ "GOC:rph" ]

null

[]

[ "GO:0030595", "GO:0097530" ]

[]

[ "GO:0030595", "GO:0097530" ]

[]

mah

2010-02-09T04:08:17Z

false

true

6

GO:0071622

71,622

regulation of granulocyte chemotaxis

biological_process

Any process that modulates the rate, frequency or extent of granulocyte chemotaxis. Granulocyte chemotaxis is the movement of a granulocyte in response to an external stimulus.

[ "GOC:mah" ]

null

[]

[ "GO:0002688" ]

[ "regulates GO:0071621" ]

[ "regulates" ]

[ "GO:0071621" ]

[ "GO:0002688", "GO:0071621" ]

[ "GO:0065007", "regulates GO:0071621" ]

[]

mah

2010-02-09T04:09:24Z

false

true

9

GO:0071623

71,623

negative regulation of granulocyte chemotaxis

biological_process

Any process that decreases the rate, frequency or extent of granulocyte chemotaxis. Granulocyte chemotaxis is the movement of a granulocyte in response to an external stimulus.

[ "GOC:mah" ]

null

[]

[ "GO:0002689", "GO:0071622" ]

[ "negatively_regulates GO:0071621" ]

[ "negatively_regulates" ]

[ "GO:0071621" ]

[ "GO:0002689", "GO:0071621", "GO:0071622" ]

[ "GO:0065007", "negatively_regulates GO:0071621" ]

[]

mah

2010-02-09T04:13:19Z

false

true

8

GO:0071624

71,624

positive regulation of granulocyte chemotaxis

biological_process

Any process that increases the rate, frequency or extent of granulocyte chemotaxis. Granulocyte chemotaxis is the movement of a granulocyte in response to an external stimulus.

[ "GOC:mah" ]

null

[]

[ "GO:0002690", "GO:0071622" ]

[ "positively_regulates GO:0071621" ]

[ "positively_regulates" ]

[ "GO:0071621" ]

[ "GO:0002690", "GO:0071621", "GO:0071622" ]

[ "GO:0065007", "positively_regulates GO:0071621" ]

[]

mah

2010-02-09T04:15:36Z

false

true

7

GO:0071625

71,625

vocalization behavior

biological_process

The behavior in which an organism produces sounds by a mechanism involving its respiratory system.

[ "GOC:mah" ]

null

[ "vocalisation behaviour" ]

[ "EXACT" ]

[]

[ "GO:0007610" ]

[]

[ "GO:0007610" ]

[]

mah

2010-02-10T11:02:58Z

false

true

8

GO:0071626

71,626

mastication

biological_process

The process of biting and mashing food with the teeth prior to swallowing.

[ "GOC:gvg" ]

null

[ "chewing" ]

[ "EXACT" ]

[]

[ "GO:0022600" ]

[]

[ "GO:0022600" ]

[]

mah

2010-02-10T11:19:48Z

false

true

4

GO:0071628

71,628

obsolete intrinsic component of fungal-type vacuolar membrane

cellular_component

OBSOLETE. The component of a fungal-type vacuole membrane consisting of the gene products and protein complexes having either part of their peptide sequence embedded in the hydrophobic region of the membrane or some other covalently attached group such as a GPI anchor that is similarly embedded in the membrane.

[ "GOC:dos", "GOC:mah" ]

This term was obsoleted because it represents protein topology, not a cellular component.

[]

[ "GO:0000329" ]

[]

[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/23424\" xsd:anyURI" ]

mah

2010-02-10T03:53:00Z

true

1

GO:0071629

71,629

cytoplasm protein quality control by the ubiquitin-proteasome system

biological_process

The chemical reactions and pathways resulting in the breakdown of misfolded proteins in the cytoplasm, which are targeted to cytoplasmic proteasomes for degradation.

[ "GOC:mah", "GOC:rb", "PMID:20080635" ]

See also the biological process terms 'unfolded protein response ; GO:0030968' and 'retrograde protein transport, ER to cytosol ; GO:0030970'.

[ "cytoplasm-associated proteasomal ubiquitin-dependent protein breakdown", "cytoplasm-associated proteasomal ubiquitin-dependent protein catabolism", "cytoplasm-associated proteasomal ubiquitin-dependent protein degradation", "ubiquitin-dependent catabolism of misfolded proteins by cytoplasm-associated proteas...

[ "EXACT", "EXACT", "EXACT", "EXACT" ]

[]

[ "GO:0043161", "GO:0140455" ]

[ "part_of GO:0071218" ]

[ "part_of" ]

[ "GO:0071218" ]

[ "GO:0043161", "GO:0071218", "GO:0140455" ]

[]

mah

2010-02-11T03:06:57Z

false

true

3

GO:0071630

71,630

nuclear protein quality control by the ubiquitin-proteasome system

biological_process

A protein quality control pathway that results in the breakdown of misfolded, damaged or unassembled proteins via a mechanism in which the proteins are ubiquitinated, and then targeted to nuclear proteasomes for degradation.

[ "PMID:20080635", "PMID:21211726" ]

null

[ "nucleus-associated proteasomal ubiquitin-dependent protein breakdown", "nucleus-associated proteasomal ubiquitin-dependent protein catabolism", "nucleus-associated proteasomal ubiquitin-dependent protein degradation", "ubiquitin-dependent catabolism of misfolded proteins by nucleus-associated proteasome" ]

[ "EXACT", "EXACT", "EXACT", "EXACT" ]

[]

[ "GO:0006515", "GO:0043161" ]

[ "part_of GO:0071218" ]

[ "part_of" ]

[ "GO:0071218" ]

[ "GO:0006515", "GO:0043161", "GO:0071218" ]

[]

[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/26433\" xsd:anyURI" ]

mah

2010-02-11T03:31:46Z

false

true

5

GO:0071631

71,631

mating pheromone secretion involved in positive regulation of conjugation with cellular fusion

biological_process

The regulated release of a mating pheromone, a peptide hormone that induces a behavioral or physiological response(s) from a responding organism or cell, that positively regulates a conjugation process that results in the union of cellular and genetic information from compatible mating types.

[ "GOC:elh", "GOC:jh", "GOC:mah" ]

null

[ "mating-type pheromone secretion involved in conjugation with cellular fusion", "peptide pheromone export involved in positive regulation of conjugation with cellular fusion" ]

[ "EXACT", "RELATED" ]

[ "GO:0071833" ]

[]

[ "GO:0031139", "GO:0071834" ]

[]

[ "GO:0031139", "GO:0071834" ]

[ "GO:0071834", "positively_regulates GO:0000747" ]

[]

[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/22916\" xsd:anyURI" ]

mah

2010-02-11T03:36:57Z

false

true

8