LiteFold/GO · Datasets at Hugging Face

GO:0075522

75,522

IRES-dependent viral translational initiation

biological_process

Process by which viral mRNA translation is initiated, where a domain in the 5' untranslated region (UTR) of the viral mRNA called an internal ribosome entry site (IRES) binds the host 43S preinitiation complex, circumventing regular cap-dependent translation initiation.

[ "GOC:bf", "GOC:jl", "PMID:19632368", "VZ:867" ]

null

[]

[ "VZ:867 \"Viral initiation of translation: IRES and DLP\"" ]

[ "GO:0016032" ]

[ "part_of GO:0019081" ]

[ "part_of" ]

[ "GO:0019081" ]

[ "GO:0016032", "GO:0019081" ]

[]

jl

2011-08-03T02:25:03Z

false

true

2

GO:0075523

75,523

viral translational frameshifting

biological_process

A process which occurs during viral translation, which involves a translational recoding mechanism called programmed ribosomal frameshifting. This causes the ribosome to alter its reading of the mRNA to an a different open reading frame to produce alternate viral proteins.

[ "GOC:bf", "GOC:ch", "GOC:jl", "PMID:24825891", "PMID:8852897", "VZ:860" ]

This term is intended to annotate gene products involved in the process of viral translational frameshifting, not viral proteins produced by this translation process.

[ "ribosomal frameshifting involved in viral translation" ]

[ "EXACT" ]

[]

[ "VZ:860 \"Ribosomal frameshifting\"" ]

[ "GO:0016032" ]

[ "part_of GO:0019081" ]

[ "part_of" ]

[ "GO:0019081" ]

[ "GO:0016032", "GO:0019081" ]

[]

jl

2011-08-03T02:48:46Z

false

true

8

GO:0075524

75,524

ribosomal skipping

biological_process

A translation process in which a specific viral peptide prevents the ribosome from covalently linking a new inserted amino acid, and lets it continue translation, thereby cleaving the nascent protein while allowing translation to continue.

[ "GOC:bf", "GOC:ch", "GOC:jl", "VZ:914" ]

This term is intended to annotate gene products involved in the process of ribosomal skipping, not viral proteins produced by this translation process.

[]

[ "VZ:914 \"Ribosomal skipping\"" ]

[ "GO:0016032" ]

[ "part_of GO:0019081" ]

[ "part_of" ]

[ "GO:0019081" ]

[ "GO:0016032", "GO:0019081" ]

[]

jl

2011-08-03T03:19:37Z

false

true

4

GO:0075525

75,525

viral translational termination-reinitiation

biological_process

A process which occurs as part of viral mRNA translation which allows expression of a downstream open reading frame (ORF) in a dicistronic mRNA. In this process, ribosomes translate the upstream ORF but following termination, a proportion of 40S subunits remain tethered to the mRNA and go on to re-initiate translation ...

[ "GOC:bf", "GOC:ch", "GOC:jl", "PMID:18631147", "PMID:18824510", "VZ:858" ]

This term is intended to annotate gene products involved in the process of viral translational termination-reinitiation, not viral proteins produced by this translation process.

[ "termination reinitiation involved in viral translation", "viral translation involving termination re-initiation", "viral translation involving termination-reinitiation", "viral translation involving translational stop-start" ]

[ "EXACT", "EXACT", "EXACT", "EXACT" ]

[]

[ "VZ:858 \"RNA termination-reinitiation\"" ]

[ "GO:0016032" ]

[ "part_of GO:0019081" ]

[ "part_of" ]

[ "GO:0019081" ]

[ "GO:0016032", "GO:0019081" ]

[]

jl

2011-08-04T12:01:22Z

false

true

9

GO:0075526

75,526

cap snatching

biological_process

A transcription initiation process during which a nucleotide sequence between 10 and 20 nucleotides in size is cleaved from the 5' end of host mRNAs by a viral RNA-dependent polymerase. The capped leader sequence obtained is subsequently used to prime transcription on the viral genome, which ultimately leads to the syn...

[ "GOC:bf", "GOC:jl", "VZ:839" ]

null

[ "cap snatching involved in viral mRNA transcription" ]

[ "EXACT" ]

[]

[ "VZ:839 \"Cap snatching\"" ]

[ "GO:0016032" ]

[ "part_of GO:0039697" ]

[ "part_of" ]

[ "GO:0039697" ]

[ "GO:0016032", "GO:0039697" ]

[]

jl

2011-08-04T01:19:00Z

false

true

9

GO:0075527

75,527

viral RNA editing

biological_process

The process by which bases in viral mRNA are chemically altered during viral transcription. This is usually the incorporation of 1 - 6 additional nucleotides, which shifts the reading frame, allowing the generation of different protein products or through a specific nucleotide change that eliminates the termination cod...

[ "PMID:1629949", "VZ:857" ]

null

[ "RNA editing involved in viral mRNA transcription" ]

[ "EXACT" ]

[]

[ "VZ:857 \"RNA editing\"" ]

[ "GO:0016032" ]

[ "part_of GO:0019083" ]

[ "part_of" ]

[ "GO:0019083" ]

[ "GO:0016032", "GO:0019083" ]

[]

jl

2011-08-04T02:07:03Z

false

true

3

GO:0075528

75,528

obsolete perturbation by virus of host immune response

biological_process

OBSOLETE. A process in which a virus effects a change in the host immune response.

[ "GOC:bf", "GOC:jl" ]

This term was obsoleted because it represents the same process as symbiont-mediated suppression of host innate immune response ; GO:0052170.

[ "regulation by virus of host immune system process" ]

[ "EXACT" ]

[]

[ "GO:0052170" ]

[]

[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/25569\" xsd:anyURI" ]

jl

2011-08-04T02:47:57Z

true

8

GO:0075529

75,529

establishment of latency as a circular episome

biological_process

A process by which a virus establishes a latent state within its host as an episome, where the viral genome remains silent in the cytoplasm or nucleus as a circular structure.

[ "GOC:jl" ]

null

[ "establishment of circular plasmid latency", "establishment of latency as a circular plasmid" ]

[ "EXACT", "EXACT" ]

[]

[ "GO:0075720" ]

[]

[ "GO:0075720" ]

[]

jl

2011-08-04T03:08:17Z

false

true

9

GO:0075530

75,530

establishment of latency as a linear episome

biological_process

A process by which a virus establishes a latent state within its host as an episome, where the viral genome remains silent in the cytoplasm or nucleus as linear structure.

[ "GOC:jl" ]

null

[ "establishment of latency as a linear plasmid", "establishment of linear plasmid latency" ]

[ "EXACT", "EXACT" ]

[]

[ "GO:0075720" ]

[]

[ "GO:0075720" ]

[]

jl

2011-08-04T03:14:23Z

false

true

9

GO:0075606

75,606

transport of viral material towards nucleus

biological_process

The directed movement of a virus, or part of a virus, towards the host cell nucleus. The process begins after viral entry, and ends when the viral material is at the nuclear membrane.

[ "GOC:bf", "GOC:jl", "VZ:990" ]

This process does not include the viral material crossing the nuclear membrane. For transport of viral material into the nucleus, consider instead: 'viral penetration into host nucleus ; GO:0075732'.

[ "cytoplasmic inwards viral transport", "transport of viral material to nucleus", "viral genome transport to host cell nucleus" ]

[ "EXACT", "EXACT", "EXACT" ]

[]

[ "VZ:990 \"Cytoplasmic inwards viral transport\"" ]

[ "GO:0075733" ]

[]

[ "GO:0075733" ]

[]

jl

2009-11-05T03:33:36Z

false

true

1

GO:0075705

75,705

obsolete viral entry into host cell via clathrin-mediated endocytosis followed by genetic injection through the endosome membrane

biological_process

OBSOLETE. The uptake of a virus into a host cell that begins by invagination of a specific region of the host cell plasma membrane around the bound virus to form a clathrin-coated pit, which then pinches off to form a clathrin-coated endocytic vesicles containing the virus. The vesicle then delivers its viral content t...

[ "GOC:jl" ]

This term was made obsolete because it doesn't represent a genuine process. The term injection is mostly used for prokaryotic viruses where there is no endocytosis.

[ "viral entry into host cell via clathrin-mediated endocytosis followed by genetic injection through the endosome membrane", "viral penetration via endocytosis followed by genetic injection through the endosome membrane" ]

[ "EXACT", "EXACT" ]

[]

jl

2009-04-23T02:08:06Z

true

1

GO:0075713

75,713

establishment of integrated proviral latency

biological_process

A process by which the virus integrates into the host genome and establishes as a stable provirus or prophage.

[ "GOC:jl" ]

null

[ "prophage integration", "provirus integration" ]

[ "EXACT", "EXACT" ]

[ "GO:0019047" ]

[]

[ "Reactome:R-HSA-162592 \"Integration of provirus\"", "VZ:980 \"Viral genome integration\"" ]

[ "GO:0019043" ]

[ "has_part GO:0044826" ]

[ "has_part" ]

[ "GO:0044826" ]

[ "GO:0019043", "GO:0044826" ]

[]

jl

2009-05-07T02:28:41Z

false

true

3

GO:0075720

75,720

establishment of episomal latency

biological_process

A process by which a virus establishes a latent state within its host as an episome, where the viral genome remains silent in the cytoplasm or nucleus as a distinct genetic entity.

[ "GOC:jl" ]

null

[ "establishment as a plasmid prophage", "establishment of plasmid latency" ]

[ "NARROW", "EXACT" ]

[]

[ "GO:0019043" ]

[]

[ "GO:0019043" ]

[]

jl

2009-11-26T03:57:44Z

false

true

9

GO:0075732

75,732

viral penetration into host nucleus

biological_process

The crossing by the virus of the host nuclear membrane, either as naked viral genome or for small viruses as an intact capsid.

[ "PMID:22929056", "VZ:989" ]

null

[ "viral entry into host nucleus", "viral import into host nucleus" ]

[ "EXACT", "EXACT" ]

[]

[ "VZ:989 \"Viral penetration into host nucleus\"" ]

[ "GO:0075733" ]

[]

[ "GO:0075733" ]

[]

jl

2009-05-01T02:43:16Z

false

true

7

GO:0075733

75,733

intracellular transport of virus

biological_process

The directed movement of a virus, or part of a virus, within the host cell.

[ "GOC:ai", "GOC:bf", "GOC:jl", "PMID:11733033" ]

null

[ "egress of virus within host cell", "intracellular transport of viral material", "intracellular virion transport", "movement of virus within host cell", "viral egress", "viral genome transport in host cell" ]

[ "EXACT", "EXACT", "RELATED", "EXACT", "RELATED", "EXACT" ]

[ "GO:0046788", "GO:0046795", "GO:0046796" ]

[]

[ "Reactome:R-HSA-168271 \"Transport of Ribonucleoproteins into the Host Nucleus\"", "Reactome:R-HSA-168274 \"Export of Viral Ribonucleoproteins from Nucleus\"", "Reactome:R-HSA-174490 \"Membrane binding and targetting of GAG proteins\"" ]

[ "GO:0044403", "GO:0046794" ]

[ "occurs_in GO:0043657", "part_of GO:0019058" ]

[ "occurs_in", "part_of" ]

[ "GO:0043657", "GO:0019058" ]

[ "GO:0019058", "GO:0043657", "GO:0044403", "GO:0046794" ]

[ "GO:0046794", "occurs_in GO:0043657" ]

[]

jl

2009-05-01T04:01:33Z

false

true

2

GO:0080001

80,001

mucilage extrusion from seed coat

biological_process

The process in which seed mucilage expands through hydration and breaks the outer cell wall that encapsulates the whole seed upon imbibition. Mucilage, mainly composed of pectins, is formed during seed development and deposited into the apoplast underneath the outer wall of the seed coat.

[ "PMID:18266922" ]

null

[ "mucilage release from seed coat", "secretion of mucilage from seed coat" ]

[ "RELATED", "RELATED" ]

[]

[ "GO:0048609" ]

[ "part_of GO:0009845", "part_of GO:0048316" ]

[ "part_of", "part_of" ]

[ "GO:0009845", "GO:0048316" ]

[ "GO:0009845", "GO:0048316", "GO:0048609" ]

[]

null

false

true

3

GO:0080002

80,002

UDP-glucose:4-aminobenzoate acylglucosyltransferase activity

molecular_function

Catalysis of the reaction: 4-aminobenzoate + UDP-alpha-D-glucose = 1-O-(4-aminobenzoyl)-beta-D-glucose + UDP.

[ "PMID:18385129", "RHEA:85851" ]

null

[ "UDP-glucose:p-aminobenzoate acylglucosyltransferase activity", "UDP-glucose:p-aminobenzoate glucosyltransferase activity", "UDP-glucose:pABA acylglucosyltransferase activity" ]

[ "RELATED", "RELATED", "RELATED" ]

[]

[ "MetaCyc:RXN-6142", "RHEA:85851" ]

[ "GO:0035251" ]

[]

[ "GO:0035251" ]

[]

[ "skos:exactMatch RHEA:85851", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/28273\" xsd:anyURI", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/28775\" xsd:anyURI" ]

null

false

true

2

GO:0080003

80,003

thalianol metabolic process

biological_process

The chemical reactions and pathways involving the triterpene thalianol.

[ "PMID:18356490" ]

null

[ "thalianol metabolism" ]

[ "EXACT" ]

[]

[ "GO:0006722" ]

[]

[ "GO:0006722" ]

[]

null

false

true

4

GO:0080005

80,005

photosystem stoichiometry adjustment

biological_process

Adjustment of Photosystem I/Photosystem II ratio in response to light conditions. The function of photosystem stoichiometry adjustment is to compensate for any deficiency in energy conversion at either photosystem I or photosystem II by increasing the quantity the photosystem that will otherwise become the rate-limitin...

[ "PMID:11607105" ]

null

[]

[ "GO:0010109" ]

[]

[ "GO:0010109" ]

[]

null

false

true

9

GO:0080006

80,006

internode patterning

biological_process

Determines the spacing between two shoot nodes. A shoot node is the region of the shoot where the spikelet, flower, floret, branch, bud and/or leaves are attached.

[ "GOC:tb" ]

null

[]

[ "GO:0007389" ]

[ "part_of GO:0048367" ]

[ "part_of" ]

[ "GO:0048367" ]

[ "GO:0007389", "GO:0048367" ]

[]

null

false

true

9

GO:0080007

80,007

S-nitrosoglutathione reductase (NADH) activity

molecular_function

Catalysis of the reaction: S-nitrosoglutathione + NADH + H+ = S-(hydroxysulfenamide)glutathione + NAD+.

[ "PMID:11260719", "PMID:27094420", "PMID:30795534" ]

S-(hydroxysulfenamide)glutathione (GSNHOH) is an unstable intermediate. At high GSH levels, it is decomposed to glutathione disulfide (GSSG) and hydroxylamine. At low GSH levels, GSNHOH spontaneously converts to glutathione sulfinamid (GSONH2), which can be hydrolyzed to glutathione sulfinic acid (GSOOH) and ammonia. {...

[]

[ "MetaCyc:RXN-17884", "RHEA:78371" ]

[ "GO:0016616" ]

[]

[ "GO:0016616" ]

[]

[ "skos:exactMatch RHEA:78371", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/23357\" xsd:anyURI", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/27135\" xsd:anyURI", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/30193\" xsd:anyURI" ]

null

false

true

7

GO:0080008

80,008

Cul4-RING E3 ubiquitin ligase complex

cellular_component

A ubiquitin ligase complex in which a cullin from the Cul4 family and a RING domain protein form the catalytic core; substrate specificity is conferred by an adaptor protein.

[ "PMID:16792691", "PMID:18223036", "PMID:18552200" ]

null

[]

[ "GO:0031461" ]

[]

[ "GO:0031461" ]

[]

null

false

true

8

GO:0080009

80,009

obsolete mRNA methylation

biological_process

OBSOLETE. The posttranscriptional addition of methyl groups to specific residues in an mRNA molecule.

[ "PMID:18505803" ]

The reason for obsoletion is that this term represents a molecular function.

[]

[ "GO:0016556" ]

[]

[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/26943\" xsd:anyURI" ]

null

true

8

GO:0080010

80,010

obsolete regulation of oxygen and reactive oxygen species metabolic process

biological_process

OBSOLETE. Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving dioxygen (O2), or any of the reactive oxygen species, e.g. superoxide anions (O2-), hydrogen peroxide (H2O2), and hydroxyl radicals (-OH).

[ "PMID:18450450" ]

This term was made obsolete because, as part of the GO/ChEBI alignment effort, curators determined that oxygen and reactive oxygen species should not be grouped together.

[ "regulation of oxygen and reactive oxygen species metabolic process" ]

[ "EXACT" ]

[]

[ "GO:2000374", "GO:2000377" ]

[]

null

true

6

GO:0080012

80,012

trihydroxyferuloyl spermidine O-methyltransferase activity

molecular_function

Catalysis of the reaction: trihydroxyferuloyl spermidine + S-adenosyl-L-methionine = dihydroxyferuloyl-sinapoyl spermidine + S-adenosyl-L-homocysteine + H+.

[ "PMID:18557837" ]

null

[ "N1,N5,N10-tris-(5-hydroxyferuloyl)spermidine O-methyltransferase activity" ]

[ "EXACT" ]

[]

[ "MetaCyc:RXN-11263" ]

[ "GO:0008171" ]

[]

[ "GO:0008171" ]

[]

null

false

true

6

GO:0080013

80,013

(E,E)-geranyllinalool synthase activity

molecular_function

Catalysis of the reaction: (2E,6E,10E)-geranylgeranyl diphosphate + H2O = (6E,10E)-geranyllinalool + diphosphate.

[ "PMID:18398052", "RHEA:38155" ]

null

[]

[ "EC:4.2.3.144", "MetaCyc:RXN-10441", "RHEA:38155" ]

[ "GO:0016838" ]

[]

[ "GO:0016838" ]

[]

[ "skos:exactMatch EC:4.2.3.144", "skos:exactMatch MetaCyc:RXN-10441", "skos:exactMatch RHEA:38155", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/30910\" xsd:anyURI" ]

null

false

true

4

GO:0080014

80,014

thalianol hydroxylase activity

molecular_function

Catalysis of the reaction: a thalianol = a thalian-diol. This reaction is the addition of a hydroxyl group to thalianol ((13R,14R,17E)-podioda-8,17,21-trien-3beta-ol) to create a thalian-diol ((13R,14R,17E)-podioda-8,17,21-trien-3beta,X-diol), where the hydroxyl group may be attached at one of several different availab...

[ "MetaCyc:RXN-9631", "PMID:17474751", "PMID:18356490" ]

In Field and Osbourn 2008 (PMID:18356490), thalianol is referred to as (3S,13S,3R)-malabarica-8,17,21-trien-3-ol and thalian-diol is referred to as (3S,13S,14R)-malabarica-8,17,21-trien-3,?-diol, but the error in this naming system was pointed out in Kolesnikova 2007 (PMID:17474751). The new names used in the definitio...

[]

[ "MetaCyc:RXN-9631" ]

[ "GO:0016712" ]

[]

[ "GO:0016712" ]

[]

[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/28051\" xsd:anyURI" ]

null

false

true

1

GO:0080015

80,015

sabinene synthase activity

molecular_function

Catalysis of the reaction: (2E)-geranyl diphosphate = diphosphate + sabinene.

[ "PMID:12566586", "PMID:9747540", "RHEA:68636" ]

null

[]

[ "MetaCyc:RXN-5103", "RHEA:25508", "RHEA:32547", "RHEA:68636" ]

[ "GO:0009975", "GO:0010333" ]

[]

[ "GO:0009975", "GO:0010333" ]

[]

[ "skos:exactMatch RHEA:68636", "skos:narrowMatch RHEA:25508", "skos:narrowMatch RHEA:32547", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/28063\" xsd:anyURI", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/30193\" xsd:anyURI" ]

null

false

true

3

GO:0080017

80,017

alpha-humulene synthase activity

molecular_function

Catalysis of the reaction: 2-trans,6-trans-farnesyl diphosphate = alpha-humulene + diphosphate.

[ "PMID:12566586", "PMID:9442047", "RHEA:31895" ]

null

[]

[ "EC:4.2.3.104", "MetaCyc:RXN-8415", "RHEA:31895" ]

[ "GO:0009975", "GO:0010334" ]

[]

[ "GO:0009975", "GO:0010334" ]

[]

[ "skos:exactMatch EC:4.2.3.104", "skos:exactMatch RHEA:31895", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/30193\" xsd:anyURI" ]

null

false

true

9

GO:0080018

80,018

anthocyanin 5-O-glucosyltransferase activity

molecular_function

Catalysis of the reaction: an anthocyanin + UDP-D-glucose = an anthocyanin-5-O-glucoside + UDP.

[ "PMID:15807784" ]

null

[]

[ "GO:0035251" ]

[]

[ "GO:0035251" ]

[]

null

false

true

3

GO:0080019

80,019

alcohol-forming very long-chain fatty acyl-CoA reductase activity

molecular_function

Catalysis of the reaction: a very long-chain fatty acyl-CoA + 2 NADPH + 2 H+ = a very long-chain primary fatty alcohol + 2 NADP+ + CoA.

[ "PMID:16980563", "RHEA:81751" ]

While there is not universal consensus on the lengths of short-, medium-, long- and very-long-chain fatty acids, the GO uses the definitions in ChEBI (see CHEBI:26666, CHEBI:59554, CHEBI:15904 and CHEBI:27283).

[ "fatty acyl CoA reductase (alcohol-forming) activity", "fatty acyl-CoA reductase (alcohol-forming) activity", "fatty-acyl-CoA reductase (alcohol-forming) activity" ]

[ "EXACT", "EXACT", "RELATED" ]

[]

[ "MetaCyc:RXNQT-4192", "RHEA:81735", "RHEA:81739", "RHEA:81751", "RHEA:81775", "RHEA:81779" ]

[ "GO:0016620" ]

[]

[ "GO:0016620" ]

[]

[ "skos:exactMatch MetaCyc:RXNQT-4192", "skos:exactMatch RHEA:81751", "skos:narrowMatch RHEA:81735", "skos:narrowMatch RHEA:81739", "skos:narrowMatch RHEA:81775", "skos:narrowMatch RHEA:81779", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/24250\" xsd:anyURI", "term_tracker_ite...

null

false

true

9

GO:0080020

80,020

regulation of coenzyme A biosynthetic process

biological_process

Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving coenzyme A.

[ "PMID:18621975" ]

null

[]

[ "GO:0009889", "GO:0019219", "GO:0042762", "GO:0051174", "GO:0062012" ]

[ "regulates GO:0015937" ]

[ "regulates" ]

[ "GO:0015937" ]

[ "GO:0009889", "GO:0015937", "GO:0019219", "GO:0042762", "GO:0051174", "GO:0062012" ]

[ "GO:0065007", "regulates GO:0015937" ]

[]

null

false

true

3

GO:0080021

80,021

response to benzoic acid

biological_process

Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a benzoic acid stimulus.

[ "PMID:18753285" ]

null

[ "response to benzoic acid stimulus" ]

[ "EXACT" ]

[]

[ "GO:1901700" ]

[]

[ "GO:1901700" ]

[]

null

false

true

9

GO:0080022

80,022

primary root development

biological_process

The process whose specific outcome is the progression of the primary root over time, from its formation to the mature structure. The primary root develops directly from the embryonic radicle.

[ "GOC:dhl" ]

null

[]

[ "GO:0048364" ]

[]

[ "GO:0048364" ]

[]

null

false

true

4

GO:0080023

80,023

(2E)-enoyl-CoA hydratase activity

molecular_function

Catalysis of the reaction: a (3R)-3-hydroxyacyl-CoA = a (2E)-enoyl-CoA + H2O.

[ "PMID:16982622", "RHEA:26526" ]

null

[ "(3R)-3-hydroxyacyl-CoA dehydratase activity", "3R-hydroxyacyl-CoA dehydratase activity" ]

[ "EXACT", "EXACT" ]

[]

[ "EC:4.2.1.119", "MetaCyc:RXN-7699", "RHEA:26526", "RHEA:39303", "RHEA:39343", "RHEA:39351", "RHEA:39363", "RHEA:39375", "RHEA:39387", "RHEA:39399", "RHEA:39411", "RHEA:39423", "RHEA:39439", "RHEA:39475", "RHEA:39487", "RHEA:39499", "RHEA:39511", "RHEA:39523", "RHEA:39535", "RHE...

[ "GO:0018812" ]

[]

[ "GO:0018812" ]

[]

[ "skos:exactMatch EC:4.2.1.119", "skos:exactMatch MetaCyc:RXN-7699", "skos:exactMatch RHEA:26526", "skos:narrowMatch RHEA:39303", "skos:narrowMatch RHEA:39343", "skos:narrowMatch RHEA:39351", "skos:narrowMatch RHEA:39363", "skos:narrowMatch RHEA:39375", "skos:narrowMatch RHEA:39387", "skos:narrowMa...

null

false

true

1

GO:0080024

80,024

indolebutyric acid metabolic process

biological_process

The chemical reactions and pathways involving indolebutyric acid, a compound that serves as an active or storage form of the hormone indole-3-acetic acid (an auxin) in many plants.

[ "PMID:18725356" ]

null

[ "IBA metabolic process", "IBA metabolism", "indole-3-butyric acid metabolic process" ]

[ "EXACT", "EXACT", "NARROW" ]

[]

[ "GO:0009850", "GO:0032787", "GO:0042430" ]

[]

[ "GO:0009850", "GO:0032787", "GO:0042430" ]

[]

null

false

true

2

GO:0080025

80,025

phosphatidylinositol-3,5-bisphosphate binding

molecular_function

Binding to phosphatidylinositol-3,5-bisphosphate, a derivative of phosphatidylinositol in which the inositol ring is phosphorylated at the 3' and 5' positions.

[ "GOC:bf", "PMID:18397324" ]

null

[ "PtdIns(3,5)P2 binding" ]

[ "EXACT" ]

[]

[ "GO:1901981", "GO:1902936" ]

[]

[ "GO:1901981", "GO:1902936" ]

[]

null

false

true

8

GO:0080026

80,026

response to indolebutyric acid

biological_process

Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an indolebutyric acid stimulus.

[ "PMID:18725356" ]

null

[ "response to IBA stimulus", "response to indole-3-butyric acid stimulus", "response to indolebutyric acid stimulus" ]

[ "EXACT", "NARROW", "EXACT" ]

[]

[ "GO:0009733", "GO:1901698", "GO:1901700" ]

[]

[ "GO:0009733", "GO:1901698", "GO:1901700" ]

[]

null

false

true

6

GO:0080027

80,027

response to herbivore

biological_process

Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a herbivore.

[ "PMID:18987211" ]

null

[]

[ "GO:0051707" ]

[]

[ "GO:0051707" ]

[]

null

false

true

4

GO:0080028

80,028

nitrile biosynthetic process

biological_process

The chemical reactions and pathways resulting in the formation of a nitrile, an organic compound containing trivalent nitrogen attached to one carbon atom.

[ "PMID:18987211" ]

null

[]

[ "GO:0009058", "GO:0050898" ]

[]

[ "GO:0009058", "GO:0050898" ]

[]

null

false

true

1

GO:0080029

80,029

cellular response to boron-containing substance levels

biological_process

Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus reflecting the presence, absence, or concentration of boron-containing substances.

[ "PMID:18952773" ]

null

[ "cellular response to boron levels" ]

[ "EXACT" ]

[]

[ "GO:0010036", "GO:0031669", "GO:0070887" ]

[]

[ "GO:0010036", "GO:0031669", "GO:0070887" ]

[]

null

false

true

7

GO:0080030

80,030

methyl indole-3-acetate esterase activity

molecular_function

Catalysis of the reaction: H2O + methyl (indol-3-yl)acetate = (indol-3-yl)acetate + H+ + methanol.

[ "PMID:18467465", "RHEA:32919" ]

null

[ "indole-3-Acetic acid methyl ester esterase activity", "MeIAA esterase activity", "Methyl IAA esterase activity" ]

[ "EXACT", "EXACT", "EXACT" ]

[]

[ "MetaCyc:RXN-10711", "RHEA:32919" ]

[ "GO:0052689" ]

[]

[ "GO:0052689" ]

[]

[ "skos:exactMatch MetaCyc:RXN-10711", "skos:exactMatch RHEA:32919", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/21843\" xsd:anyURI", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/28199\" xsd:anyURI" ]

null

false

true

2

GO:0080031

80,031

methyl salicylate esterase activity

molecular_function

Catalysis of the reaction: H2O + methyl salicylate = H+ + methanol + salicylate.

[ "PMID:18467465", "PMID:18643994", "RHEA:33611" ]

null

[ "MESA esterase activity", "methyl SA esterase activity", "methylsalicylate esterase activity", "salicylic acid methyl ester esterase activity" ]

[ "EXACT", "EXACT", "EXACT", "EXACT" ]

[]

[ "MetaCyc:RXNQT-4366", "RHEA:33611" ]

[ "GO:0052689" ]

[]

[ "GO:0052689" ]

[]

[ "skos:exactMatch MetaCyc:RXNQT-4366", "skos:exactMatch RHEA:33611", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/28199\" xsd:anyURI" ]

null

false

true

1

GO:0080032

80,032

methyl jasmonate esterase activity

molecular_function

Catalysis of the reaction: H2O + methyl (-)-jasmonate = H+ + jasmonate + methanol.

[ "PMID:15233793", "PMID:18467465", "RHEA:55372" ]

null

[ "jasmonic acid methyl ester esterase activity", "MEJA esterase activity", "methyl JA esterase activity" ]

[ "EXACT", "EXACT", "EXACT" ]

[]

[ "MetaCyc:RXN-10767", "RHEA:55372" ]

[ "GO:0052689" ]

[]

[ "GO:0052689" ]

[]

[ "skos:exactMatch MetaCyc:RXN-10767", "skos:exactMatch RHEA:55372", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/28199\" xsd:anyURI" ]

null

false

true

3

GO:0080033

80,033

response to nitrite

biological_process

Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nitrite stimulus.

[ "GOC:dhl", "PMID:17951451" ]

null

[]

[ "GO:1901698", "GO:1901700" ]

[]

[ "GO:1901698", "GO:1901700" ]

[]

null

false

true

7

GO:0080034

80,034

host response to induction by symbiont of tumor, nodule or growth in host

biological_process

Any process that results in a change in the state or activity of a host cell or organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of the formation of an abnormal mass of cells in the host organism, induced by a symbiont. The host is defined as the larger of the organisms i...

[ "PMID:18836040" ]

null

[]

[ "GO:0009608" ]

[]

[ "GO:0009608" ]

[]

null

false

true

7

GO:0080036

80,036

regulation of cytokinin-activated signaling pathway

biological_process

Any process that modulates the frequency, rate or extent of cytokinin signaling.

[ "GOC:dhl" ]

null

[ "regulation of cytokinin mediated signaling pathway", "regulation of cytokinin mediated signalling" ]

[ "RELATED", "EXACT" ]

[]

[ "GO:0009966" ]

[ "regulates GO:0009736" ]

[ "regulates" ]

[ "GO:0009736" ]

[ "GO:0009736", "GO:0009966" ]

[ "GO:0065007", "regulates GO:0009736" ]

[]

null

false

true

1

GO:0080037

80,037

negative regulation of cytokinin-activated signaling pathway

biological_process

Any process that stops, prevents, or reduces the frequency, rate or extent of cytokinin signaling.

[ "GOC:dhl", "PMID:14973166" ]

null

[ "negative regulation of cytokinin mediated signaling pathway", "negative regulation of cytokinin mediated signalling" ]

[ "RELATED", "EXACT" ]

[]

[ "GO:0009968", "GO:0080036" ]

[ "negatively_regulates GO:0009736" ]

[ "negatively_regulates" ]

[ "GO:0009736" ]

[ "GO:0009736", "GO:0009968", "GO:0080036" ]

[ "GO:0065007", "negatively_regulates GO:0009736" ]

[]

null

false

true

6

GO:0080038

80,038

positive regulation of cytokinin-activated signaling pathway

biological_process

Any process that activates or increases the frequency, rate or extent of cytokinin signaling.

[ "GOC:dhl" ]

null

[ "positive regulation of cytokinin mediated signaling pathway", "positive regulation of cytokinin mediated signalling" ]

[ "RELATED", "EXACT" ]

[]

[ "GO:0009967", "GO:0080036" ]

[ "positively_regulates GO:0009736" ]

[ "positively_regulates" ]

[ "GO:0009736" ]

[ "GO:0009736", "GO:0009967", "GO:0080036" ]

[ "GO:0065007", "positively_regulates GO:0009736" ]

[]

null

false

true

7

GO:0080040

80,040

positive regulation of cellular response to phosphate starvation

biological_process

Any process that activates or increases the frequency, rate or extent of cellular response to phosphate starvation.

[ "PMID:18315545" ]

null

[]

[ "GO:0032109", "GO:0048522", "GO:0140255" ]

[ "positively_regulates GO:0016036" ]

[ "positively_regulates" ]

[ "GO:0016036" ]

[ "GO:0016036", "GO:0032109", "GO:0048522", "GO:0140255" ]

[ "GO:0065007", "positively_regulates GO:0016036" ]

[]

null

false

true

8

GO:0080042

80,042

ADP-glucose pyrophosphatase activity

molecular_function

Catalysis of the reaction: ADP-glucose + H2O = AMP + glucose-1-phosphate.

[ "GOC:tb" ]

null

[ "ADP-glucose pyrophosphohydrolase activity" ]

[ "EXACT" ]

[]

[ "GO:0019144" ]

[]

[ "GO:0019144" ]

[]

[ "term_tracker_item \"ADP-glucose diphosphatase activity\" xsd:anyURI", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/31141\" xsd:anyURI" ]

null

false

true

5

GO:0080043

80,043

quercetin 3-O-glucosyltransferase activity

molecular_function

Catalysis of the transfer of a glucosyl group from UDP-glucose to the 3-hydroxy group of a quercetin molecule.

[ "PMID:15352060" ]

null

[]

[ "GO:0035251" ]

[]

[ "GO:0035251" ]

[]

null

false

true

6

GO:0080044

80,044

quercetin 7-O-glucosyltransferase activity

molecular_function

Catalysis of the transfer of a glucosyl group from UDP-glucose to the 7-hydroxy group of a quercetin molecule.

[ "PMID:15352060" ]

null

[]

[ "GO:0035251" ]

[]

[ "GO:0035251" ]

[]

null

false

true

4

GO:0080045

80,045

quercetin 3'-O-glucosyltransferase activity

molecular_function

Catalysis of the transfer of a glucosyl group from UDP-glucose to the 3'-hydroxy group of a quercetin molecule.

[ "PMID:15352060" ]

null

[]

[ "GO:0035251" ]

[]

[ "GO:0035251" ]

[]

null

false

true

5

GO:0080046

80,046

quercetin 4'-O-glucosyltransferase activity

molecular_function

Catalysis of the transfer of a glucosyl group from UDP-glucose to the 4'-hydroxy group of a quercetin molecule.

[ "PMID:15352060" ]

null

[]

[ "MetaCyc:RXN-10788" ]

[ "GO:0035251" ]

[]

[ "GO:0035251" ]

[]

null

false

true

7

GO:0080047

80,047

GDP-L-galactose phosphorylase activity

molecular_function

Catalysis of the reaction: GDP-beta-L-galactose + phosphate = beta-L-galactose-1-phosphate + GDP.

[ "PMID:17462988", "PMID:18463094", "RHEA:27698" ]

null

[ "galactose-1-phosphate guanylyltransferase (GDP) activity", "GDP:galactose-1-phosphate guanyltransferase activity" ]

[ "EXACT", "EXACT" ]

[ "GO:0010475" ]

[]

[ "EC:2.7.7.69", "MetaCyc:RXNQT-4141", "RHEA:27698" ]

[ "GO:0070568" ]

[]

[ "GO:0070568" ]

[]

[ "skos:exactMatch EC:2.7.7.69", "skos:exactMatch RHEA:27698", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/23283\" xsd:anyURI", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/30193\" xsd:anyURI" ]

null

false

true

2

GO:0080048

80,048

GDP-D-glucose phosphorylase activity

molecular_function

Catalysis of the reaction: GDP-alpha-D-glucose + phosphate = alpha-D-glucose-1-phosphate + GDP.

[ "PMID:17462988", "PMID:18463094" ]

null

[ "GDP:glucose-1-phosphate guanyltransferase activity", "glucose-1-phosphate guanylyltransferase (GDP) activity" ]

[ "EXACT", "EXACT" ]

[ "GO:0010474" ]

[]

[ "EC:2.7.7.78", "MetaCyc:RXN-12486", "RHEA:30387" ]

[ "GO:0070568" ]

[]

[ "GO:0070568" ]

[]

[ "skos:exactMatch EC:2.7.7.78", "skos:exactMatch RHEA:30387", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/23283\" xsd:anyURI", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/30193\" xsd:anyURI" ]

null

false

true

6

GO:0080049

80,049

L-gulono-1,4-lactone dehydrogenase activity

molecular_function

Catalysis of the reaction: L-gulono-1,4-lactone + 2 ferricytochrome c = L-ascorbate + 2 ferrocytochrome c.

[ "PMID:18190525", "PMID:30112455", "RHEA:47248" ]

null

[]

[ "MetaCyc:RXN-1439", "RHEA:47248" ]

[ "GO:0016632" ]

[]

[ "GO:0016632" ]

[]

[ "skos:exactMatch RHEA:47248", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/25865\" xsd:anyURI", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/30193\" xsd:anyURI" ]

null

false

true

3

GO:0080050

80,050

regulation of seed development

biological_process

Any process that modulates the frequency, rate or extent of seed development.

[ "PMID:19141706" ]

null

[]

[ "GO:0048580", "GO:2000241" ]

[ "regulates GO:0048316" ]

[ "regulates" ]

[ "GO:0048316" ]

[ "GO:0048316", "GO:0048580", "GO:2000241" ]

[ "GO:0065007", "regulates GO:0048316" ]

[]

null

false

true

2

GO:0080051

80,051

cutin transport

biological_process

The directed movement of cutin into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Cutin, which consists of C16-18 fatty acids, is the major component of the cuticle that covers the plant surface.

[ "PMID:17951461" ]

null

[]

[ "GO:0006810" ]

[]

[ "GO:0006810" ]

[]

null

false

true

5

GO:0080052

80,052

response to histidine

biological_process

Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a histidine stimulus.

[ "PMID:15889294" ]

null

[]

[ "GO:0043200", "GO:1901698", "GO:1901700" ]

[]

[ "GO:0043200", "GO:1901698", "GO:1901700" ]

[]

null

false

true

7

GO:0080053

80,053

response to phenylalanine

biological_process

Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a phenylalanine stimulus.

[ "PMID:15889294" ]

null

[]

[ "GO:0043200", "GO:1901698", "GO:1901700" ]

[]

[ "GO:0043200", "GO:1901698", "GO:1901700" ]

[]

null

false

true

6

GO:0080056

80,056

petal vascular tissue pattern formation

biological_process

Vascular tissue pattern formation as it occurs in the petal of vascular plants.

[ "PMID:17369435" ]

null

[]

[ "GO:0010051" ]

[]

[ "GO:0010051" ]

[]

dhl

2009-04-13T02:25:01Z

false

true

8

GO:0080058

80,058

protein deglutathionylation

biological_process

The protein modification process in which a glutathione molecule is removed from a protein amino acid by breaking a disulfide linkage.

[ "GOC:tb" ]

null

[ "protein amino acid deglutathionylation" ]

[ "EXACT" ]

[]

[ "gocheck_obsoletion_candidate" ]

[]

[ "GO:0036211" ]

[]

[ "GO:0036211" ]

[]

dhl

2009-04-13T02:48:06Z

false

true

3

GO:0080059

80,059

flavonol 3-O-arabinosyltransferase activity

molecular_function

Catalysis of the reaction: UDP-arabinose + a flavonol = UDP + a flavonol 3-O-D-arabinoside.

[ "PMID:18757557" ]

null

[]

[ "GO:0008194", "GO:0052636" ]

[]

[ "GO:0008194", "GO:0052636" ]

[]

dhl

2009-04-13T02:55:11Z

false

true

5

GO:0080060

80,060

integument development

biological_process

The process whose specific outcome is the progression of the integument over time, from its formation to the mature structure. Integument is one of the layers of tissue that usually covers the ovule, enveloping the nucellus and forming the micropyle at the apex.

[ "PMID:19054366", "PO:0020021" ]

null

[]

[ "GO:0003006", "GO:0009888" ]

[ "part_of GO:0048481" ]

[ "part_of" ]

[ "GO:0048481" ]

[ "GO:0003006", "GO:0009888", "GO:0048481" ]

[]

dhl

2009-04-13T02:58:07Z

false

true

9

GO:0080061

80,061

indole-3-acetonitrile nitrilase activity

molecular_function

Catalysis of the reaction: (indol-3-yl)acetonitrile + 2 H2O = (indol-3-yl)acetate + NH4+.

[ "RHEA:45776" ]

null

[]

[ "MetaCyc:RXN-1404", "RHEA:45776" ]

[ "GO:0000257" ]

[]

[ "GO:0000257" ]

[]

[ "skos:broadMatch EC:3.5.5.1", "skos:exactMatch RHEA:45776" ]

dhl

2009-04-13T03:30:42Z

false

true

4

GO:0080064

80,064

4,4-dimethyl-9beta,19-cyclopropylsterol oxidation

biological_process

A lipid oxidation process proceeding through a series of three successive monooxygenations of the alpha methyl group on the C4 carbon (CH3 to CH2OH to CHO to COOH) and resulting in this overall reaction: 4,4-dimethyl-9beta,19-cyclopropylsterol + 3 NADPH + 3 H+ + 3 O2 = 4-alpha-carboxy, 4-beta-methyl-9beta,19-cyclopropy...

[ "GOC:pr", "PMID:14653780" ]

null

[ "4,4-dimethyl-9beta,19-cyclopropylsterol-4alpha-methyl oxidase activity" ]

[ "RELATED" ]

[]

[ "GO:0034440" ]

[]

[ "GO:0034440" ]

[]

dhl

2009-04-13T03:39:58Z

false

true

6

GO:0080065

80,065

4-alpha-methyl-delta7-sterol oxidation

biological_process

A lipid oxidation process proceeding through a series of three successive monooxygenations of the alpha methyl group on the C4 carbon (CH3 to CH2OH to CHO to COOH) and resulting in this overall reaction: 4-alpha-methyl-delta7-sterol + 3 NADPH + 3 H+ + 3 O2 = 4-alpha-carboxy,delta7-sterol + 3 NADP+ + 3 H2O.

[ "GOC:pr", "PMID:14653780" ]

null

[ "4-alpha-methyl-delta7-sterol-4alpha-methyl oxidase activity" ]

[ "RELATED" ]

[]

[ "GO:0034440" ]

[]

[ "GO:0034440" ]

[]

dhl

2009-04-13T03:41:50Z

false

true

7

GO:0080066

80,066

obsolete 3-methylthiopropyl-desulfoglucosinolate sulfotransferase activity

molecular_function

OBSOLETE. Catalysis of the reaction: 3-methylthiopropyl-desulfoglucosinolate + 3'-phosphoadenosine 5'-phosphosulfate = 3-methylthiopropyl-glucosinolate + adenosine 3',5'-bisphosphate.

[ "PMID:19077143" ]

This term was obsoleted because it represents a specific substrate of aliphatic desulfoglucosinolate sulfotransferase activity ; GO:0120527.

[]

[ "GO:0120527" ]

[]

[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/28853\" xsd:anyURI" ]

dhl

2009-04-13T04:04:08Z

true

6

GO:0080067

80,067

obsolete 4-methylthiobutyl-desulfoglucosinolate sulfotransferase activity

molecular_function

OBSOLETE. Catalysis of the reaction: 4-methylthiobutyl-desulfoglucosinolate + 3'-phosphoadenosine 5'-phosphosulfate = 4-methylthiobutyl-glucosinolate + adenosine 3',5'-bisphosphate.

[ "PMID:19077143" ]

This term was obsoleted because it represents a specific substrate of aliphatic desulfoglucosinolate sulfotransferase activity ; GO:0120527.

[]

[ "GO:0120527" ]

[]

[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/28853\" xsd:anyURI" ]

dhl

2009-04-13T04:05:53Z

true

6

GO:0080068

80,068

obsolete 5-methylthiopentyl-desulfoglucosinolate sulfotransferase activity

molecular_function

OBSOLETE. Catalysis of the reaction: 5-methylthiopentyl-desulfoglucosinolate + 3'-phosphoadenosine 5'-phosphosulfate = 5-methylthiopentyl-glucosinolate + adenosine 3',5'-bisphosphate.

[ "PMID:19077143" ]

This term was obsoleted because it represents a specific substrate of aliphatic desulfoglucosinolate sulfotransferase activity ; GO:0120527.

[]

[ "GO:0120527" ]

[]

[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/28853\" xsd:anyURI" ]

dhl

2009-04-13T04:06:59Z

true

3

GO:0080069

80,069

obsolete 7-methylthioheptyl-desulfoglucosinolate sulfotransferase activity

molecular_function

OBSOLETE. Catalysis of the reaction: 7-methylthioheptyl-desulfoglucosinolate + 3'-phosphoadenosine 5'-phosphosulfate = 7-methylthioheptyl-glucosinolate + adenosine 3',5'-bisphosphate.

[ "PMID:19077143" ]

This term was obsoleted because it represents a specific substrate of aliphatic desulfoglucosinolate sulfotransferase activity ; GO:0120527.

[]

[ "GO:0120527" ]

[]

[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/28853\" xsd:anyURI" ]

dhl

2009-04-13T04:07:32Z

true

9

GO:0080070

80,070

obsolete 8-methylthiooctyl-desulfoglucosinolate sulfotransferase activity

molecular_function

OBSOLETE. Catalysis of the reaction: 8-methylthiooctyl-desulfoglucosinolate + 3'-phosphoadenosine 5'-phosphosulfate = 8-methylthiooctyl-glucosinolate + adenosine 3',5'-bisphosphate.

[ "PMID:19077143" ]

This term was obsoleted because it represents a specific substrate of aliphatic desulfoglucosinolate sulfotransferase activity ; GO:0120527.

[]

[ "GO:0120527" ]

[]

[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/28853\" xsd:anyURI" ]

dhl

2009-04-13T04:07:58Z

true

4

GO:0080071

80,071

obsolete indol-3-yl-methyl-desulfoglucosinolate sulfotransferase activity

molecular_function

OBSOLETE. Catalysis of the reaction: indol-3-yl-methyl-desulfoglucosinolate + 3'-phosphoadenosine 5'-phosphosulfate = indol-3-yl-methyl-glucosinolate + adenosine 3',5'-bisphosphate.

[ "PMID:19077143" ]

This term was obsoleted because it represents the same activity as aromatic desulfoglucosinolate sulfotransferase activity ; GO:0047364.

[]

[ "GO:0047364" ]

[]

[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/28853\" xsd:anyURI" ]

dhl

2009-04-13T04:08:33Z

true

3

GO:0080072

80,072

spermidine:sinapoyl CoA N-acyltransferase activity

molecular_function

Catalysis of the transfer of a sinapoyl group to a nitrogen atom on the spermidine molecule.

[ "PMID:19077165" ]

null

[]

[ "GO:0016410" ]

[]

[ "GO:0016410" ]

[]

dhl

2009-04-13T04:16:28Z

false

true

3

GO:0080073

80,073

spermidine:coumaroyl CoA N-acyltransferase activity

molecular_function

Catalysis of the transfer of a coumaroyl group to a nitrogen atom on the spermidine molecule.

[ "PMID:19077165" ]

null

[]

[ "GO:0016410" ]

[]

[ "GO:0016410" ]

[]

dhl

2009-04-13T04:16:59Z

false

true

6

GO:0080074

80,074

spermidine:caffeoyl CoA N-acyltransferase activity

molecular_function

Catalysis of the transfer of a caffeoyl group to a nitrogen atom on the spermidine molecule.

[ "PMID:19077165" ]

null

[]

[ "GO:0016410" ]

[]

[ "GO:0016410" ]

[]

dhl

2009-04-13T04:17:23Z

false

true

5

GO:0080075

80,075

spermidine:feruloyl CoA N-acyltransferase activity

molecular_function

Catalysis of the transfer of a feruloyl group to a nitrogen atom on the spermidine molecule.

[ "PMID:19077165" ]

null

[]

[ "GO:0016410" ]

[]

[ "GO:0016410" ]

[]

dhl

2009-04-13T04:17:50Z

false

true

9

GO:0080076

80,076

obsolete caffeoyl CoA:S-adenosyl-L-methionine O-methyltransferase activity

molecular_function

OBSOLETE. Catalysis of the transfer of a methyl group from S-adenosyl-L-methionine to the oxygen atom of a caffeoyl CoA molecule.

[ "PMID:19077165" ]

The reason for obsoletion is that this molecular function is equivalent to affeoyl-CoA O-methyltransferase activity.

[]

[ "GO:0042409" ]

[]

[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/28816\" xsd:anyURI" ]

dhl

2009-04-14T03:55:49Z

true

4

GO:0080077

80,077

trihydroxyferuloyl spermidine:S-adenosyl-L-methionine O-methyltransferase activity

molecular_function

Catalysis of the transfer of a methyl group from S-adenosyl-L-methionine to the oxygen atom of a trihydroxyferuloyl spermidine molecule.

[ "PMID:19077165" ]

null

[]

[ "GO:0008171" ]

[]

[ "GO:0008171" ]

[]

dhl

2009-04-14T04:00:45Z

false

true

3

GO:0080078

80,078

tricaffeoyl spermidine:S-adenosyl-L-methionine O-methyltransferase activity

molecular_function

Catalysis of the transfer of a methyl group from S-adenosyl-L-methionine to the oxygen atom of a tricaffeoyl spermidine molecule.

[ "PMID:19077165" ]

null

[]

[ "GO:0008171" ]

[]

[ "GO:0008171" ]

[]

dhl

2009-04-14T04:01:25Z

false

true

7

GO:0080079

80,079

cellobiose glucosidase activity

molecular_function

Catalysis of the reaction: D-cellobiose + H2O = 2 D-glucose.

[ "PMID:15604686", "RHEA:30679" ]

null

[ "cellobiose glucohydrolase activity", "D-cellobiose glucosidase activity" ]

[ "EXACT", "EXACT" ]

[]

[ "MetaCyc:RXN-10773", "RHEA:30679" ]

[ "GO:0008422" ]

[]

[ "GO:0008422" ]

[]

[ "skos:exactMatch RHEA:30679", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/22615\" xsd:anyURI", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/30193\" xsd:anyURI" ]

dhl

2009-04-14T04:07:16Z

false

true

5

GO:0080081

80,081

4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity

molecular_function

Catalysis of the hydrolysis of glucosidic link in 4-methylumbelliferyl-beta-D-glucopyranoside.

[ "PMID:15604686" ]

null

[]

[ "GO:0008422" ]

[]

[ "GO:0008422" ]

[]

dhl

2009-04-14T04:09:06Z

false

true

3

GO:0080083

80,083

beta-gentiobiose beta-glucosidase activity

molecular_function

Catalysis of the hydrolysis of glucosidic link in beta-gentiobiose.

[ "PMID:15604686" ]

null

[]

[ "GO:0008422" ]

[]

[ "GO:0008422" ]

[]

dhl

2009-04-14T04:10:14Z

false

true

6

GO:0080084

80,084

5S rDNA binding

molecular_function

Binding to a 5S rDNA sequence, encoding ribosomal 5S rRNA, which is individually transcribed by RNA polymerase III, rather than by RNA polymerase I, in species where it exists.

[ "PMID:12711688" ]

null

[]

[ "GO:0000182" ]

[]

[ "GO:0000182" ]

[]

dhl

2009-04-22T02:32:20Z

false

true

5

GO:0080085

80,085

signal recognition particle, chloroplast targeting

cellular_component

A complex consisting of a protein and RNA component which binds the signal sequence of some proteins and facilitates their export to the chloroplast.

[ "PMID:17513500" ]

null

[]

[ "GO:0048500" ]

[]

[ "GO:0048500" ]

[]

dhl

2009-04-22T02:36:01Z

false

true

5

GO:0080086

80,086

stamen filament development

biological_process

The process whose specific outcome is the progression of the filament over time, from its formation to the mature structure. Filament is the stalk of a stamen.

[ "PMID:19139039", "PO:0009067" ]

null

[ "filament development" ]

[ "EXACT" ]

[]

[ "GO:0003006", "GO:0048856" ]

[ "part_of GO:0048443" ]

[ "part_of" ]

[ "GO:0048443" ]

[ "GO:0003006", "GO:0048443", "GO:0048856" ]

[]

dhl

2009-04-22T03:12:03Z

false

true

8

GO:0080088

80,088

spermidine hydroxycinnamate conjugate biosynthetic process

biological_process

The chemical reactions and pathways resulting in the formation of spermidine hydroxycinnamate conjugates.

[ "PMID:19077165" ]

null

[]

[ "GO:0009058" ]

[]

[ "GO:0009058" ]

[]

dhl

2009-04-22T03:24:03Z

false

true

5

GO:0080089

80,089

sinapoyl spermidine:sinapoyl CoA N-acyltransferase activity

molecular_function

Catalysis of the transfer of a sinapoyl group to a nitrogen atom on a sinapoyl spermidine molecule resulting in the formation of a disinapoyl spermidine derivative.

[ "PMID:19168716" ]

null

[]

[ "GO:0016410" ]

[]

[ "GO:0016410" ]

[]

dhl

2009-04-22T03:27:55Z

false

true

9

GO:0080090

80,090

regulation of primary metabolic process

biological_process

Any process that modulates the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism involving those compounds formed as a part of the normal anabolic and catabolic processes. These processes take place in most, if not all, cells of the organism.

[ "PMID:19211694" ]

null

[]

[ "gocheck_do_not_annotate" ]

[]

[ "GO:0019222" ]

[ "regulates GO:0044238" ]

[ "regulates" ]

[ "GO:0044238" ]

[ "GO:0019222", "GO:0044238" ]

[ "GO:0065007", "regulates GO:0044238" ]

[]

[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/31498\" xsd:anyURI" ]

dhl

2009-04-22T04:30:52Z

false

true

2

GO:0080091

80,091

regulation of raffinose metabolic process

biological_process

Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving raffinose.

[ "PMID:19211694" ]

null

[]

[ "GO:0006109" ]

[ "regulates GO:0033530" ]

[ "regulates" ]

[ "GO:0033530" ]

[ "GO:0006109", "GO:0033530" ]

[ "GO:0065007", "regulates GO:0033530" ]

[]

dhl

2009-04-22T04:36:27Z

false

true

1

GO:0080092

80,092

regulation of pollen tube growth

biological_process

Any process that modulates the frequency, rate or extent of pollen tube growth.

[ "PMID:19208902" ]

null

[]

[ "GO:0051239", "GO:0051510", "GO:2000241" ]

[ "regulates GO:0009860" ]

[ "regulates" ]

[ "GO:0009860" ]

[ "GO:0009860", "GO:0051239", "GO:0051510", "GO:2000241" ]

[ "GO:0065007", "regulates GO:0009860" ]

[]

dhl

2009-04-22T04:41:29Z

false

true

3

GO:0080093

80,093

regulation of photorespiration

biological_process

Any process that modulates the rate, frequency or extent of photorespiration. Photorespiration is a light-dependent catabolic process occurring concomitantly with photosynthesis in plants (especially C3 plants) whereby dioxygen (O2) is consumed and carbon dioxide (CO2) is evolved.

[ "GOC:tb" ]

null

[]

[ "GO:0009889" ]

[ "regulates GO:0009853" ]

[ "regulates" ]

[ "GO:0009853" ]

[ "GO:0009853", "GO:0009889" ]

[ "GO:0065007", "regulates GO:0009853" ]

[]

dhl

2009-04-22T04:44:48Z

false

true

7

GO:0080094

80,094

response to trehalose-6-phosphate

biological_process

Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a trehalose-6-phosphate stimulus.

[ "PMID:19193861" ]

null

[ "response to trehalose-6-phosphate stimulus" ]

[ "EXACT" ]

[]

[ "GO:0046683", "GO:1901700" ]

[]

[ "GO:0046683", "GO:1901700" ]

[]

dhl

2009-04-22T04:49:13Z

false

true

3

GO:0080095

80,095

phosphatidylethanolamine-sterol O-acyltransferase activity

molecular_function

Catalysis of the reaction: a phosphatidylethanolamine + a sterol = a sterol ester + a lysophosphatidylethanolamine.

[ "PMID:16020547" ]

null

[]

[ "GO:0008374" ]

[]

[ "GO:0008374" ]

[]

dhl

2009-04-23T03:39:33Z

false

true

6

GO:0080097

80,097

L-tryptophan:pyruvate transaminase activity

molecular_function

Catalysis of the reaction: L-tryptophan + pyruvate = indole-3-pyruvate + L-alanine.

[ "RHEA:27586" ]

null

[ "L-tryptophan:pyruvate aminotransferase activity" ]

[ "EXACT" ]

[]

[ "EC:2.6.1.99", "MetaCyc:RXN-10139", "RHEA:27586" ]

[ "GO:0047635" ]

[]

[ "GO:0047635" ]

[]

[ "skos:exactMatch EC:2.6.1.99", "skos:exactMatch RHEA:27586", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/30193\" xsd:anyURI", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/31140\" xsd:anyURI" ]

dhl

2009-04-23T03:45:23Z

false

true

8

GO:0080098

80,098

L-tyrosine:pyruvate transaminase activity

molecular_function

Catalysis of the reaction: L-tyrosine + pyruvate = 3-(4-hydroxyphenyl)pyruvate + L-alanine.

[ "MetaCyc:RXN3O-4157" ]

null

[ "L-tyrosine aminotransferase activity", "L-tyrosine-pyruvate transaminase activity", "L-tyrosine:pyruvate aminotransferase activity" ]

[ "BROAD", "EXACT", "EXACT" ]

[]

[ "MetaCyc:RXN3O-4157" ]

[ "GO:0140385" ]

[]

[ "GO:0140385" ]

[]

[ "skos:broadMatch EC:2.6.1.58", "skos:exactMatch MetaCyc:RXN3O-4157", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/31140\" xsd:anyURI" ]

dhl

2009-04-23T03:47:53Z

false

true

8

GO:0080100

80,100

obsolete L-glutamine:2-oxoglutarate aminotransferase activity

molecular_function

OBSOLETE. Catalysis of the reaction: L-glutamine + 2-oxoglutarate = 2-oxoglutaramate + L-glutamate.

[ "PMID:18394996" ]

This term was obsoleted because it is a specific substrate of L-tryptophan:2-oxoglutarate aminotransferase activity ; GO:0050362.

[ "L-glutamine:alpha-ketoglutarate aminotransferase activity" ]

[ "EXACT" ]

[]

[ "GO:0050362" ]

[]

[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/28070\" xsd:anyURI" ]

dhl

2009-04-23T03:56:16Z

true

3

GO:0080101

80,101

obsolete phosphatidyl-N-dimethylethanolamine N-methyltransferase activity

molecular_function

OBSOLETE. Catalysis of the reaction: S-adenosyl-L-methionine + phosphatidyl-N-dimethylethanolamine = S-adenosyl-L-homocysteine + phosphatidylcholine.

[ "PMID:19366698" ]

This term was obsoleted because it represents a specific substrate of phosphatidyl-N-methylethanolamine N-methyltransferase ; GO:0000773.

[]

[ "GO:0000773" ]

[]

[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/28070\" xsd:anyURI" ]

dhl

2009-04-23T04:02:41Z

true

4