| --- |
| license: cc0-1.0 |
| task_categories: |
| - tabular-classification |
| - tabular-regression |
| tags: |
| - clinical-trials |
| - clinicaltrials-gov |
| - aact |
| - duckdb |
| - medical |
| - health |
| - government-data |
| pretty_name: ClinicalTrials.gov Database |
| size_categories: |
| - 10M<n<100M |
| --- |
| |
| # ClinicalTrials.gov Database (AACT) |
|
|
| A clean, queryable DuckDB database built from the [AACT flat files](https://aact.ctti-clinicaltrials.org/) -- the most comprehensive structured export of ClinicalTrials.gov data. |
|
|
| **56,397,018 rows** across **48 tables** covering every registered clinical trial. |
|
|
| Built with [clinicaltrials-database](https://github.com/ian-nason/clinicaltrials-database). |
|
|
| ## Quick Start |
|
|
| ### DuckDB CLI |
|
|
| ```sql |
| INSTALL httpfs; |
| LOAD httpfs; |
| ATTACH 'https://huggingface.co/datasets/Nason/clinicaltrials-database/resolve/main/clinicaltrials.duckdb' AS ct (READ_ONLY); |
| |
| -- Trials by phase |
| SELECT overall_status, COUNT(*) as n |
| FROM ct.studies |
| GROUP BY overall_status |
| ORDER BY n DESC; |
| ``` |
|
|
| ### Python |
|
|
| ```python |
| import duckdb |
| con = duckdb.connect() |
| con.sql("INSTALL httpfs; LOAD httpfs;") |
| con.sql(""" |
| ATTACH 'https://huggingface.co/datasets/Nason/clinicaltrials-database/resolve/main/clinicaltrials.duckdb' |
| AS ct (READ_ONLY) |
| """) |
| con.sql("SELECT * FROM ct.studies LIMIT 5").show() |
| ``` |
|
|
| DuckDB uses HTTP range requests, so only the pages needed for your query are downloaded. |
|
|
| ## Tables |
|
|
| | Table | Description | Rows | |
| |-------|-------------|------| |
| | `reported_events` | Summary of reported adverse events | 11,446,277 | |
| | `outcome_measurements` | Summary data for outcome measures by study group | 4,777,352 | |
| | `browse_conditions` | NLM-generated MeSH terms for study conditions | 4,194,046 | |
| | `design_outcomes` | Planned outcome measures and observations | 3,566,612 | |
| | `facilities` | Facility names, addresses, and recruiting status | 3,410,973 | |
| | `baseline_measurements` | Demographic and baseline measures by group | 2,808,533 | |
| | `browse_interventions` | NLM-generated MeSH terms for study interventions | 2,480,003 | |
| | `result_groups` | Aggregate list of group titles/descriptions for results reporting | 2,120,694 | |
| | `outcome_counts` | Sample sizes for each outcome by study group | 1,537,817 | |
| | `keywords` | Investigator-provided keywords describing the study | 1,523,516 | |
| | `design_group_interventions` | Cross-reference mapping design groups to interventions | 1,283,125 | |
| | `study_references` | Citations to publications related to the study | 1,078,399 | |
| | `design_groups` | Protocol-specified groups or cohorts assigned to interventions | 1,056,031 | |
| | `conditions` | Disease or condition names studied in each trial | 1,025,650 | |
| | `interventions` | Interventions or exposures: drugs, devices, procedures, vaccines | 973,952 | |
| | `sponsors` | Sponsor and collaborator names and types | 920,618 | |
| | `milestones` | Participant progress through each stage of the study | 855,865 | |
| | `countries` | Countries where the study has sites | 783,722 | |
| | `id_information` | Identifiers other than NCT ID (org study IDs, secondary IDs) | 748,312 | |
| | `outcomes` | Outcome measure descriptions and time frames | 638,016 | |
| | `outcome_analysis_groups` | Groups involved in each outcome analysis | 609,509 | |
| | `drop_withdrawals` | Summary of participant withdrawals: counts and reasons | 577,923 | |
| | `reported_event_totals` | Totals of reported adverse events by category | 577,536 | |
| | `calculated_values` | AACT-computed fields: months to report results, facilities count, etc. | 576,029 | |
| | `studies` | Core study record: title, status, phase, type, dates, enrollment, and regulatory info | 576,029 | |
| | `brief_summaries` | Brief text summary of the study protocol | 575,064 | |
| | `detailed_descriptions` | Detailed text description of the study protocol | 575,064 | |
| | `eligibilities` | Participant eligibility criteria (inclusion/exclusion, age, sex) | 575,064 | |
| | `designs` | Study design details: allocation, masking, assignment, purpose | 571,286 | |
| | `responsible_parties` | Parties responsible for submitting study information | 557,553 | |
| | `overall_officials` | People responsible for overall scientific leadership | 519,601 | |
| | `search_term_results` | | 494,618 | |
| | `intervention_other_names` | Synonymous names for interventions | 470,456 | |
| | `facility_contacts` | Contact information at each study facility | 409,886 | |
| | `outcome_analyses` | Statistical analyses performed on outcomes | 315,026 | |
| | `baseline_counts` | Sample sizes at baseline for each study group | 230,199 | |
| | `facility_investigators` | Investigator names at each study facility | 223,509 | |
| | `central_contacts` | Primary and backup contacts for enrollment questions | 217,960 | |
| | `ipd_information_types` | Individual participant data sharing information types | 87,849 | |
| | `provided_documents` | Protocol, SAP, and informed consent form documents | 78,018 | |
| | `result_contacts` | Points of contact for scientific information about results | 76,963 | |
| | `result_agreements` | Agreements between sponsor and principal investigators about results | 76,963 | |
| | `participant_flows` | Recruitment and pre-assignment details | 76,963 | |
| | `links` | Web links relevant to the study | 74,921 | |
| | `pending_results` | Events related to submission of results for QC review | 32,304 | |
| | `documents` | Full study protocol and statistical analysis plan | 10,692 | |
| | `retractions` | Retraction notices for study results or publications | 334 | |
| | `search_terms` | | 186 | |
|
|
| ## Data Source |
|
|
| [AACT (Aggregate Analysis of ClinicalTrials.gov)](https://aact.ctti-clinicaltrials.org/) -- maintained by the Clinical Trials Transformation Initiative (CTTI). Updated daily from ClinicalTrials.gov. This is public domain U.S. government data. |
|
|
| ## License |
|
|
| Database build code: MIT. Underlying data: public domain (U.S. government work). |
|
|
| ## GitHub |
|
|
| Full source code, build instructions, and data dictionary: [github.com/ian-nason/clinicaltrials-database](https://github.com/ian-nason/clinicaltrials-database) |
|
|