source stringclasses 1
value | repo stringlengths 5 63 | repo_url stringlengths 24 82 | path stringlengths 5 167 | language stringclasses 1
value | license stringclasses 5
values | stars int64 10 51.4k | ref stringclasses 23
values | size_bytes int64 200 258k | text stringlengths 137 258k |
|---|---|---|---|---|---|---|---|---|---|
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/phylop44wayall_spec.rb | Ruby | mit | 19 | master | 469 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::PhyloP44wayAll" do
describe "#find_by_interval" do
context 'given range chr1:1-1,000' do
it 'returns a record with column accessors' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::GenomicInterval... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeyalechipsignalpol2hela_spec.rb | Ruby | mit | 19 | master | 506 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeYaleChipSignalPol2Hela" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bi... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/transmapalnmrna_spec.rb | Ruby | mit | 19 | master | 464 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::TransMapAlnMRna" do
describe "#find_by_interval" do
context "given range chr1:1-500,000" do
it 'returns (r.tName == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::GenomicInterval.parse("... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/ucsfmedipseqbraincoverage_spec.rb | Ruby | mit | 19 | master | 487 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::UcsfMedipSeqBrainCoverage" do
describe "#find_by_interval" do
context 'given range chr1:1-500' do
it 'returns a record with column accessors' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::Genomi... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeegaspfullspida_spec.rb | Ruby | mit | 19 | master | 491 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeEgaspFullSpida" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::Genom... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/chainpantro2_spec.rb | Ruby | mit | 19 | master | 493 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::ChainPanTro2" do
describe "#find_by_interval" do
context 'given range chrX:1-1,000,000' do
it 'returns a record with column accessors (r.tName == "chrX")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i ... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/kgprotalias_spec.rb | Ruby | mit | 19 | master | 421 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::KgProtAlias" do
describe "#find_by_kgID" do
context 'given "uc001aal.1"' do
it 'returns an results (r.alias == "NP_001005484")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
r = Bio::Ucsc::Hg18::KgProtAl... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeyalechipstat1helamaskless50mer38bppval_spec.rb | Ruby | mit | 19 | master | 538 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeYaleChIPSTAT1HeLaMaskLess50mer38bpPval" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connec... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeaffychiphl60pvalstricth3k9k14dhr32_spec.rb | Ruby | mit | 19 | master | 531 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeAffyChIpHl60PvalStrictH3K9K14DHr32" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeaffychiphl60pvalctcfhr00_spec.rb | Ruby | mit | 19 | master | 511 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeAffyChIpHl60PvalCtcfHr00" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = ... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/illuminaprobes_spec.rb | Ruby | mit | 19 | master | 460 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::IlluminaProbes" do
describe "#find_by_interval" do
context "given range chr1:1-10,000" do
it 'returns (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::GenomicInterval.parse("ch... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeucsdchiphelah3h4stat1_p30_spec.rb | Ruby | mit | 19 | master | 513 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeUcsdChipHeLaH3H4stat1_p30" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i =... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeaffychiphl60pvalpu1hr32_spec.rb | Ruby | mit | 19 | master | 509 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeAffyChIpHl60PvalPu1Hr32" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = B... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/rmskrm327_spec.rb | Ruby | mit | 19 | master | 1,548 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::RmskRM327" do
describe "::Chr1_Rmsk#find_by_interval" do
context "given range chr1:1-10,000" do
it "returens an array of results" do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::GenomicInterval.pa... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/ceblasttab_spec.rb | Ruby | mit | 19 | master | 414 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::CeBlastTab" do
describe "#find_by_query" do
context 'given "uc010fpt.1"' do
it 'returens a result (r.target == "B0024.15")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
r = Bio::Ucsc::Hg18::CeBlastTab.f... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodesangerchiph3k4me1ptr8_spec.rb | Ruby | mit | 19 | master | 505 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeSangerChipH3K4me1Ptr8" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/knowntosuper_spec.rb | Ruby | mit | 19 | master | 406 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::KnownToSuper" do
describe ".find_by_gene" do
context 'given "uc009vjh.1"' do
it 'returns (r.superfamily == 81321)' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
r = Bio::Ucsc::Hg18::KnownToSuper.find_by_... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/knowntou133plus2_spec.rb | Ruby | mit | 19 | master | 418 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::KnownToU133Plus2" do
describe ".find_by_name" do
context 'given "uc004fon.1"' do
it 'returns (r.value == "218951_s_at")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
r = Bio::Ucsc::Hg18::KnownToU133Plus... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/hinvgenemrna_spec.rb | Ruby | mit | 19 | master | 456 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::HInvGeneMrna" do
describe "#find_by_interval" do
context "given range chr1:1-12,000" do
it 'returns (r.tName == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::GenomicInterval.parse("chr1... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodesangerchiph3k4me3_spec.rb | Ruby | mit | 19 | master | 497 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeSangerChipH3K4me3" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::Ge... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/snp128seq_spec.rb | Ruby | mit | 19 | master | 389 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::Snp128Seq" do
describe "#find_by_acc" do
context 'given "rs242"' do
it "returns a reasult (r.file_offset == 0)" do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
r = Bio::Ucsc::Hg18::Snp128Seq.find_by_acc("rs... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/snparrayillumina1m_spec.rb | Ruby | mit | 19 | master | 496 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::SnpArrayIllumina1M" do
describe "#find_by_interval" do
context "given range chr1:1-1,000,000" do
it "returns an array of results with column accessors" do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = B... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/kgxref_spec.rb | Ruby | mit | 19 | master | 373 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::KgXref" do
describe "#find_by_geneSymbol" do
context 'given "TP53"' do
it "returens an array of results" do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
Bio::Ucsc::Hg18::KgXref.find_all_by_geneSymbol("TP53... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeaffyec51fetaltestissignal_spec.rb | Ruby | mit | 19 | master | 515 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeAffyEc51FetalTestisSignal" do
describe "#find_by_interval" do
context "given range chr21:1-10,000,000" do
it 'returns a record (r.chrom == "chr21")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i ... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeyalechipsitespol2nhela_spec.rb | Ruby | mit | 19 | master | 506 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeYaleChipSitesPol2nHela" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bi... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodesangerchiphith4acgm06990_spec.rb | Ruby | mit | 19 | master | 511 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeSangerChipHitH4acGM06990" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = ... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodebufirstexonheart_spec.rb | Ruby | mit | 19 | master | 494 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeBuFirstExonHeart" do
describe "#find_by_interval" do
context "given range chr11:1-5,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::Geno... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodesangerchipcenterh3k4me3gm06990_spec.rb | Ruby | mit | 19 | master | 523 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeSangerChipCenterH3K4me3GM06990" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeuppsalachipusf1_spec.rb | Ruby | mit | 19 | master | 492 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeUppsalaChipUsf1" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::Geno... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeaffychiphl60sitesbrg1hr02_spec.rb | Ruby | mit | 19 | master | 513 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeAffyChIpHl60SitesBrg1Hr02" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i =... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/uppsalachipusf1sites_spec.rb | Ruby | mit | 19 | master | 485 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::UppsalaChipUsf1Sites" do
describe "#find_by_interval" do
context 'given range chr1:1-100,000' do
it 'returns a record with column accessors' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::Genomic... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodestanfordpromoterspanc1_spec.rb | Ruby | mit | 19 | master | 508 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeStanfordPromotersPanc1" do
describe "#find_by_interval" do
context "given range chr11:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = B... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/pgyoruban3_spec.rb | Ruby | mit | 19 | master | 773 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::PgYoruban3" do
describe "#find_by_interval" do
context "given range chr1:1-500,000" do
it "returns an array of results" do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::GenomicInterval.parse("chr1:... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/eiojcvinasneg_spec.rb | Ruby | mit | 19 | master | 459 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EioJcviNASNeg" do
describe "#find_by_interval" do
context "given range chr1:1-500,000" do
it 'returns (r.tName == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::GenomicInterval.parse("chr... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodestanfordchipsmoothedk562sp1_spec.rb | Ruby | mit | 19 | master | 516 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeStanfordChipSmoothedK562Sp1" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/burgernaseqgemmapperalignbrainallrawsignal_spec.rb | Ruby | mit | 19 | master | 525 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::BurgeRnaSeqGemMapperAlignBrainAllRawSignal" do
describe "#find_by_interval" do
context "given range chr1:1-10,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodegencoderacefragstestis_spec.rb | Ruby | mit | 19 | master | 507 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeGencodeRaceFragsTestis" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bi... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeucsdchiphelah3h4tmh3k4_p30_spec.rb | Ruby | mit | 19 | master | 515 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeUcsdChipHeLaH3H4tmH3K4_p30" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i ... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodestanfordpromotersmg63_spec.rb | Ruby | mit | 19 | master | 506 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeStanfordPromotersMG63" do
describe "#find_by_interval" do
context "given range chr11:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bi... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/affytxnphase3fragshepg2bottomstrand_spec.rb | Ruby | mit | 19 | master | 517 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::AffyTxnPhase3FragsHepG2BottomStrand" do
describe "#find_by_interval" do
context "given range chr1:1-1,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeyalechipsignalpol2nhela_spec.rb | Ruby | mit | 19 | master | 508 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeYaleChipSignalPol2nHela" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = B... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodegencodegenepolymorphicmar07_spec.rb | Ruby | mit | 19 | master | 507 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeGencodeGenePolymorphicMar07" do
describe "#find_by_interval" do
context "given range chr11:1-6,000,000" do
it 'returns (r.chrom == "chr11")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::Ge... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/kgspalias_spec.rb | Ruby | mit | 19 | master | 409 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::KgSpAlias" do
describe "#find_by_kgID" do
context 'given "uc001aaa.2"' do
it 'returns an results (r.alias == "BC032353")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
r = Bio::Ucsc::Hg18::KgSpAlias.find... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodebufirstexonkidney_spec.rb | Ruby | mit | 19 | master | 496 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeBuFirstExonKidney" do
describe "#find_by_interval" do
context "given range chr11:1-5,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::Gen... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeaffychiphl60pvalrarahr08_spec.rb | Ruby | mit | 19 | master | 511 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeAffyChIpHl60PvalRaraHr08" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = ... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/kgtxinfo_spec.rb | Ruby | mit | 19 | master | 419 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::KgTxInfo" do
describe "#find_by_name" do
context 'given "uc001aaa.2"' do
it 'returns an results (r.sourceAcc == "BC032353.1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
r = Bio::Ucsc::Hg18::KgTxInfo.... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeuvadnareporiginstr50hela_spec.rb | Ruby | mit | 19 | master | 510 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeUvaDnaRepOriginsTR50Hela" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = ... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/contrastgene_spec.rb | Ruby | mit | 19 | master | 466 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::ContrastGene" do
describe "#find_by_interval" do
context "given range chr1:1-10,000" do
it 'returns a results (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::GenomicInterval.p... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/cnptuzun_spec.rb | Ruby | mit | 19 | master | 476 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::CnpTuzun" do
describe "#find_by_interval" do
context "given range chr1:1-3,000,000" do
it "returns an array of results with column accessors" do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::Genomi... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeuwregulomebasesaec_spec.rb | Ruby | mit | 19 | master | 498 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeUWRegulomeBaseSAEC" do
describe "#find_by_interval" do
context "given range chr7:1-117,000,000" do
it 'returns a record (r.chrom == "chr5")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::G... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeutexchip2091fibmycstimpeaks_spec.rb | Ruby | mit | 19 | master | 516 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeUtexChip2091fibMycStimPeaks" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/hinv_spec.rb | Ruby | mit | 19 | master | 400 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::HInv" do
describe "#find_by_geneId" do
context 'given "HIT000000001"' do
it 'returns (r.mrnaAcc == "AB002292")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
r = Bio::Ucsc::Hg18::HInv.find_by_geneId("HIT... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodesangerchipcenterh3k4me3hela_spec.rb | Ruby | mit | 19 | master | 517 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeSangerChipCenterH3K4me3HeLa" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/affytxnphase3fragshepg2nuclear_spec.rb | Ruby | mit | 19 | master | 507 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::AffyTxnPhase3FragsHepG2Nuclear" do
describe "#find_by_interval" do
context "given range chr1:1-1,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bi... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/chainmm9_spec.rb | Ruby | mit | 19 | master | 485 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::ChainMm9" do
describe "#find_by_interval" do
context 'given range chrX:1-1,000,000' do
it 'returns a record with column accessors (r.tName == "chrX")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bi... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/gc5base_spec.rb | Ruby | mit | 19 | master | 446 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::Gc5Base" do
describe "#find_by_interval" do
context "given range chr1:1-50,000" do
it 'returns (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::GenomicInterval.parse("chr1:1-50... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/burgernaseqgemmapperaligntestesallrawsignal_spec.rb | Ruby | mit | 19 | master | 527 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::BurgeRnaSeqGemMapperAlignTestesAllRawSignal" do
describe "#find_by_interval" do
context "given range chr1:1-10,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeaffychiphl60pvalrarahr00_spec.rb | Ruby | mit | 19 | master | 511 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeAffyChIpHl60PvalRaraHr00" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = ... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeaffyec1fetalspleensites_spec.rb | Ruby | mit | 19 | master | 511 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeAffyEc1FetalSpleenSites" do
describe "#find_by_interval" do
context "given range chr21:1-10,000,000" do
it 'returns a record (r.chrom == "chr21")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = ... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/rgdratqtllink_spec.rb | Ruby | mit | 19 | master | 366 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::RgdRatQtlLink" do
describe "#find_by_id" do
context "given 61324" do
it 'returns "Eae5"' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
r = Bio::Ucsc::Hg18::RgdRatQtlLink.find_by_id(61324)
r.name.... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/burgernaseqgemmapperalignbrain_spec.rb | Ruby | mit | 19 | master | 501 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::BurgeRnaSeqGemMapperAlignBrain" do
describe "#find_by_interval" do
context "given range chr1:1-10,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeyaleaffynb4tparnatransmap_spec.rb | Ruby | mit | 19 | master | 514 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeYaleAffyNB4TPARNATransMap" do
describe "#find_by_interval" do
context "given range chr11:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i ... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeucsdchiphelah3h4taf250_p30_spec.rb | Ruby | mit | 19 | master | 515 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeUcsdChipHeLaH3H4TAF250_p30" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i ... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeutexchip2091fibmycraw_spec.rb | Ruby | mit | 19 | master | 504 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeUtexChip2091fibMycRaw" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/mgcgenes_spec.rb | Ruby | mit | 19 | master | 450 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::MgcGenes" do
describe "#find_by_interval" do
context "given range chr1:1-500,000" do
it 'returns (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::GenomicInterval.parse("chr1:1-... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeuwregulomebasecalu3_spec.rb | Ruby | mit | 19 | master | 500 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeUWRegulomeBaseCaLU3" do
describe "#find_by_interval" do
context "given range chr7:1-117,000,000" do
it 'returns a record (r.chrom == "chr7")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/refseqali_spec.rb | Ruby | mit | 19 | master | 456 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::RefSeqAli" do
describe "#find_by_interval" do
context "given range chr1:1-1,000,000" do
it 'returns (r.tName == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::GenomicInterval.parse("chr1... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeaffychiphl60sitescebpehr02_spec.rb | Ruby | mit | 19 | master | 515 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeAffyChIpHl60SitesCebpeHr02" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i ... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/chainstrpur2_spec.rb | Ruby | mit | 19 | master | 493 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::ChainStrPur2" do
describe "#find_by_interval" do
context 'given range chrX:1-1,000,000' do
it 'returns a record with column accessors (r.tName == "chrX")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i ... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/humanhprdp2p_spec.rb | Ruby | mit | 19 | master | 405 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::HumanHprdP2P" do
describe "#find_by_query" do
context 'given "uc003sou.1"' do
it "returns an results (r.distance == 0)" do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
r = Bio::Ucsc::Hg18::HumanHprdP2P.fin... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeaffychiphl60pvalh4kac4hr02_spec.rb | Ruby | mit | 19 | master | 515 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeAffyChIpHl60PvalH4Kac4Hr02" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i ... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeegaspupdaugustusany_spec.rb | Ruby | mit | 19 | master | 501 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeEgaspUpdAugustusAny" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/pgna12891_spec.rb | Ruby | mit | 19 | master | 770 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::PgNA12891" do
describe "#find_by_interval" do
context "given range chr1:1-500,000" do
it "returns an array of results" do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::GenomicInterval.parse("chr1:1... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/burgernaseqgemmapperalignbreast_spec.rb | Ruby | mit | 19 | master | 503 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::BurgeRnaSeqGemMapperAlignBreast" do
describe "#find_by_interval" do
context "given range chr1:1-10,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio:... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeaffychiphl60sitesstrictp63_actd_spec.rb | Ruby | mit | 19 | master | 525 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeAffyChIpHl60SitesStrictP63_ActD" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/affyu133plus2_spec.rb | Ruby | mit | 19 | master | 459 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::AffyU133Plus2" do
describe "#find_by_interval" do
context "given range chr1:1-100,000" do
it 'returns (r.tName == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::GenomicInterval.parse("chr... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/burgernaseqgemmapperalignheartallrawsignal_spec.rb | Ruby | mit | 19 | master | 525 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::BurgeRnaSeqGemMapperAlignHeartAllRawSignal" do
describe "#find_by_interval" do
context "given range chr1:1-10,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeuppsalachipach3_spec.rb | Ruby | mit | 19 | master | 492 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeUppsalaChipAch3" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::Geno... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeyalechipsignaljun_spec.rb | Ruby | mit | 19 | master | 496 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeYaleChipSignalJun" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::Ge... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/rgdqtllink_spec.rb | Ruby | mit | 19 | master | 376 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::RgdQtlLink" do
describe "#find_by_id" do
context "given 1298404" do
it 'returns "OSTEAR25_H"' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
r = Bio::Ucsc::Hg18::RgdQtlLink.find_by_id(1298404)
r.n... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeuwregulomebasepanc_spec.rb | Ruby | mit | 19 | master | 498 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeUWRegulomeBasePANC" do
describe "#find_by_interval" do
context "given range chr7:1-117,000,000" do
it 'returns a record (r.chrom == "chr7")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::G... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeyalechippvalbaf47k562_spec.rb | Ruby | mit | 19 | master | 504 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeYaleChipPvalBaf47K562" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeaffychiphl60signalstrictpol2hr32_spec.rb | Ruby | mit | 19 | master | 527 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeAffyChIpHl60SignalStrictPol2Hr32" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodesangerchipcenterh3k4me3k562_spec.rb | Ruby | mit | 19 | master | 517 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeSangerChipCenterH3K4me3K562" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/chainxentro2_spec.rb | Ruby | mit | 19 | master | 493 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::ChainXenTro2" do
describe "#find_by_interval" do
context 'given range chrX:1-1,000,000' do
it 'returns a record with column accessors (r.tName == "chrX")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i ... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/chainrn4_spec.rb | Ruby | mit | 19 | master | 485 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::ChainRn4" do
describe "#find_by_interval" do
context 'given range chrX:1-1,000,000' do
it 'returns a record with column accessors (r.tName == "chrX")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bi... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeaffychiphl60sitesrarahr02_spec.rb | Ruby | mit | 19 | master | 513 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeAffyChIpHl60SitesRaraHr02" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i =... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeucsdchiphelah3h4rnap_p30_spec.rb | Ruby | mit | 19 | master | 511 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeUcsdChipHeLaH3H4RNAP_p30" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = ... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodepseudogeneucsc2_spec.rb | Ruby | mit | 19 | master | 493 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodePseudogeneUcsc2" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::Geno... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeaffychiphl60sitesrnaphr32_spec.rb | Ruby | mit | 19 | master | 513 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeAffyChIpHl60SitesRnapHr32" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i =... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/nettaegut1_spec.rb | Ruby | mit | 19 | master | 483 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::NetTaeGut1" do
describe "#find_by_interval" do
context 'given range chr1:1-20,000' do
it 'returns a record with column accessors (r.tName == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/stsmap_spec.rb | Ruby | mit | 19 | master | 468 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::StsMap" do
describe "#find_by_interval" do
context "given range chr1:1-500,000" do
it "returns an array of results with column accessors" do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio::GenomicInt... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeyalechipstat1helabingrenpval_spec.rb | Ruby | mit | 19 | master | 518 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeYaleChIPSTAT1HeLaBingRenPval" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/chainorylat2_spec.rb | Ruby | mit | 19 | master | 493 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::ChainOryLat2" do
describe "#find_by_interval" do
context 'given range chrX:1-1,000,000' do
it 'returns a record with column accessors (r.tName == "chrX")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i ... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeaffyec51testissignal_spec.rb | Ruby | mit | 19 | master | 505 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeAffyEc51TestisSignal" do
describe "#find_by_interval" do
context "given range chr21:1-10,000,000" do
it 'returns a record (r.chrom == "chr21")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodegencoderacefragssmallintest_spec.rb | Ruby | mit | 19 | master | 517 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeGencodeRaceFragsSmallIntest" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeaffyec1prostatesites_spec.rb | Ruby | mit | 19 | master | 505 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeAffyEc1ProstateSites" do
describe "#find_by_interval" do
context "given range chr21:1-10,000,000" do
it 'returns a record (r.chrom == "chr21")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeucsdchiprnaphct116_f_spec.rb | Ruby | mit | 19 | master | 503 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeUcsdChipRnapHct116_f" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio:... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodestanfordpromotersags_spec.rb | Ruby | mit | 19 | master | 504 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeStanfordPromotersAGS" do
describe "#find_by_interval" do
context "given range chr11:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/hg18/encodeaffyrnahl60siteshr32_spec.rb | Ruby | mit | 19 | master | 503 | require 'bio-ucsc'
describe "Bio::Ucsc::Hg18::EncodeAffyRnaHl60SitesHr32" do
describe "#find_by_interval" do
context "given range chr1:1-150,000,000" do
it 'returns a record (r.chrom == "chr1")' do
Bio::Ucsc::Hg18::DBConnection.default
Bio::Ucsc::Hg18::DBConnection.connect
i = Bio:... |
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