sha256 stringlengths 64 64 | language stringclasses 27
values | size int32 1 491k | lines int32 1 21.8k | content stringlengths 1 200k |
|---|---|---|---|---|
5d378aa74b95c99f59d0faaff1a27a7d382a97fdb41174cfdebd21b9f505b415 | C/C++ | 1,077 | 36 | #pragma once
#if !defined(_MSC_VER) && __cplusplus < 202002L
#error C++20 or later compatible compiler is required to use ATen.
#endif
#include <ATen/Context.h>
#include <ATen/Device.h>
#include <ATen/DeviceGuard.h>
#include <ATen/DimVector.h>
#include <ATen/Dispatch.h>
#include <ATen/Formatting.h>
#include <ATen/Fun... |
92a0a3181022444f269ad35a058bb920697b9d5ad5ab3d5fbc482b59784a74b6 | C/C++ | 1,081 | 39 | #pragma once
#include <ATen/core/Generator.h>
#include <c10/util/intrusive_ptr.h>
namespace at {
using GeneratorFuncType = std::function<at::Generator(c10::DeviceIndex)>;
TORCH_API std::optional<GeneratorFuncType>& GetGeneratorPrivate();
class TORCH_API _GeneratorRegister {
public:
explicit _GeneratorRegister(c... |
16c13d2aaebba262ef31e822349cfabef3da0506b09b6b79d8c51e968979eaf7 | C/C++ | 1,083 | 57 | #ifndef MESH_BUILDER_H
#define MESH_BUILDER_H
#include "mesh.h"
class MeshBuilder
{
public:
static Mesh makeBar(
gravis::d3Vector p0,
gravis::d3Vector p1,
double rad,
int segments);
static void addBar(
gravis::d3Vector p0,
gravis::d3Vector p1,
double rad,
... |
7bcade57513c72b04a7fbdd1e2336c993a7d01fe306a564d4ffc35c0a3fa8dbb | C/C++ | 1,084 | 28 | /***************************************************************************
*
* Author: "Sjors H.W. Scheres"
* MRC Laboratory of Molecular Biology
*
* This program is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software F... |
72336a1a7c5667b5718283163057a429b87d1e90228912042cb7e6f9e39713df | C/C++ | 1,085 | 47 | // This file is part of Eigen, a lightweight C++ template library
// for linear algebra.
//
// Copyright (C) 2019 Rasmus Munk Larsen <rmlarsen@google.com>
//
// This Source Code Form is subject to the terms of the Mozilla
// Public License v. 2.0. If a copy of the MPL was not distributed
// with this file, You can obta... |
20c6513bb29907d52af897f54fec692a7422eb95e9dc213c50e0fcf712656ac0 | C/C++ | 1,090 | 44 | /*
* Copyright (c) Facebook, Inc. and its affiliates.
* All rights reserved.
*
* This source code is licensed under the BSD-style license found in the
* LICENSE file in the root directory of this source tree.
*/
#pragma once
#include <stddef.h>
#include <stdint.h>
#include<pytorch_qnnpack.h>
#include <qnnpack/... |
5ce0ecae6bbd8c6208eac57c107e170fe34601ab88481b3eaa60e9ef3eabc5a0 | C/C++ | 1,092 | 43 | #pragma once
#include <ATen/Config.h>
#include <ATen/core/Tensor.h>
#if AT_KLEIDIAI_ENABLED()
namespace at::native::kleidiai {
/**
* @brief Rearranges the quantized weight to support kleidiai inference
* @param bl Groupsize for quantization should be multiple of 32
*/
void kai_pack_int4_rhs(
const Tensor& weig... |
874c0eb046721fb63390d59ff33b9d79267074442e4a905499e35b634cdbfd52 | C/C++ | 1,094 | 35 | #pragma once
#include <ATen/core/TorchDispatchUtils.h>
namespace at::impl {
struct TORCH_API RestorePythonTLSSnapshot {
RestorePythonTLSSnapshot();
RestorePythonTLSSnapshot(RestorePythonTLSSnapshot&& other) = delete;
RestorePythonTLSSnapshot(const RestorePythonTLSSnapshot&) = delete;
RestorePythonTLSSnapshot... |
d8f7b2d30aa62815f50af133797d45fd61e2acf52b6a371d6c1e0bb9d4c1b99f | C/C++ | 1,096 | 59 | #ifndef PROTO_POLISH_PROGRAM_H
#define PROTO_POLISH_PROGRAM_H
#include <string>
#include <src/jaz/math/t_complex.h>
#include <src/jaz/image/buffered_image.h>
#include <src/jaz/gravis/t4Matrix.h>
#include <vector>
#include "refinement.h"
class CTF;
class AberrationsCache;
class FrameAlignmentProgram : public Refine... |
9db58e8654951f93e9d7b365b3094a9a9034d53766e758877acc74b72eb16c29 | C/C++ | 1,097 | 49 | #pragma once
#include <ATen/Tensor.h>
#include <ATen/native/mps/MetalShaderLibrary.h>
#include <ATen/native/mps/kernels/Convolution.h>
#include <cstdint>
#include <string>
namespace at::native::mps {
struct Conv3dMppTile {
int output_channels;
int output_width;
int output_height;
int simdgroups;
float co... |
63163a6e51229c2144eedb04e2c94dad176294b10db5498b6c8f090b043d4da2 | C/C++ | 1,105 | 38 | #pragma once
#include <ATen/core/Tensor.h>
#include <ATen/native/DispatchStub.h>
namespace at::native {
using weight_to_int4pack_fn = void (*)(const Tensor&, const Tensor&);
using int4pack_mm_fn =
void (*)(const Tensor&, const Tensor&, const Tensor&, int, const Tensor&);
using int8pack_mm_fn =
void (*)(const... |
bf304b0a3db46d310bf46de2f1ab5ba5099d978ec59c4b7cec47042a5b4de2ad | C/C++ | 1,115 | 52 | #ifndef TOMOLIST_H
#define TOMOLIST_H
#include <string>
#include <vector>
/*
will contain:
- tomo name
- original tilt series
- projections file
- ctf file
- dose file
- fiducial-erased tilt series (optional, can be generated)
- file with fiducial positions in 3D (optional)
*/
class TomoList
{
public:
... |
e2769c44d919775956c28e3b251bf900bd815af4b9fba69bc9a78cac6c1f22cb | C/C++ | 1,120 | 27 | #pragma once
#include <ATen/native/DispatchStub.h>
#include <c10/macros/Macros.h>
#include <c10/util/BFloat16.h>
#include <c10/util/Half.h>
namespace at::native {
#if !defined(C10_MOBILE)
using fp16_gemv_fn = void(*)(int, int, float, const Half*, int, const Half*, int, float, Half*, int);
DECLARE_DISPATCH(fp16_gemv_f... |
20e8018587e6f6cecb29f3e8677b565362c635e81c5825032a2955a1a2bf875a | C/C++ | 1,121 | 47 | /*
* Copyright (C) 1995-1997 Bernd Feige
* This file is part of avg_q and released under the GPL v3 (see avg_q/COPYING).
*/
#define FREIBURG_HEADER_LENGTH 64
/* This is just one header fragment as seen in some averaged files.
* Seems that the structure approach is not quite usable for this
* `soft' format... */
t... |
8c552eea209e1b256e75d3b59676b86c2c5613dac4809b3a92a32c483eb333d8 | C/C++ | 1,129 | 33 | // This program is free software; you can redistribute it and/or
// modify it under the terms of the GNU General Public License
// as published by the Free Software Foundation; either version 2
// of the License, or (at your option) any later version.
// This program is distributed in the hope that it will be use... |
39df7d55e660ead18a98bb73efe13b61350766d235d2b99520fa503d8ee91e5f | C/C++ | 1,134 | 48 | #pragma once
// A fixed-size array type usable from both host and
// device code.
#include <c10/macros/Macros.h>
#include <c10/util/irange.h>
namespace at::detail {
template <typename T, int size_>
struct Array {
// NOLINTNEXTLINE(*c-array*)
T data[size_];
C10_HOST_DEVICE T operator[](int i) const {
retu... |
f39c2216d0f76400a8c08955ba62cea975e85409bc6c31784b263fb92a2ec102 | C/C++ | 1,139 | 40 | #pragma once
#include <c10/core/Scalar.h>
namespace at::native {
enum class ReductionType {MAX, MEAN, MIN, SUM, PROD};
inline ReductionType get_reduction_enum(const std::string_view& reduce) {
if (reduce == "max" || reduce == "amax") {
return ReductionType::MAX;
} else if (reduce == "mean") {
return Red... |
8e62648996fa568eeff419109289e4baef27593ea2088a7da67f855945e7c145 | C/C++ | 1,140 | 37 | /*
* Copyright (c) Facebook, Inc. and its affiliates.
* All rights reserved.
*
* This source code is licensed under the BSD-style license found in the
* LICENSE file in the root directory of this source tree.
*/
#pragma once
#include <stddef.h>
#include <stdint.h>
#include <qnnpack/params.h>
#ifdef __cplusplu... |
7388c33cf81efd235b5f53aff113b3a99351ccddfc4b45f8faf7845bab763c3c | C/C++ | 1,142 | 32 | #ifndef _psplot_defines_
#define _psplot_defines_ 1
#include <stdarg.h>
#include <stdio.h>
int deviceID (va_list *args);
int openplID (void);
int closeplID (void);
int flushplID (void);
int spaceID (int x0, int y0, int x1, int y1);
int colorID (int red, int green, int ... |
c4ca9e63d99a4f6a4926a5d91534d5cc8ba15b3fbc3d3695ca20411ba9fa7540 | C/C++ | 1,145 | 31 | #pragma once
#include <array>
#include <cstdint>
namespace at {
class TensorBase;
}
namespace at::native {
void launch_grid_sampler_2d_forward_kernel(
const TensorBase &output, const TensorBase &input, const TensorBase &grid,
int64_t interpolation_mode, int64_t padding_mode, bool align_corners);
void launch... |
841d15bba53e664d2ab38848b25cc15d500c4faa0b7be566975c357460df756b | C/C++ | 1,151 | 24 | // ----------------------------------------------------------------------------
// Numerical diagonalization of 3x3 matrcies
// Copyright (C) 2006 Joachim Kopp
// ----------------------------------------------------------------------------
// This library is free software; you can redistribute it and/or
// modify it u... |
e3019db344486bdbb2519d0a01768fb8fb27000d3fb3b931f739c72877a9679c | C/C++ | 1,154 | 44 | #ifndef FILAMENT_MODEL_H
#define FILAMENT_MODEL_H
#include <src/jaz/image/buffered_image.h>
class FilamentModel
{
public:
// constructs a displacement field from a set of parameters
virtual void apply(
const std::vector<double>& params,
const std::vector<std::vector<float>>& encodedCoords,
std:... |
bab1b280c6e132aa790bfc9f49d18606b021bef8e2102295a765db460674b6f0 | C/C++ | 1,157 | 54 | #ifndef TOMO_TEMPLATEPICKER_PROGRAM_H
#define TOMO_TEMPLATEPICKER_PROGRAM_H
#include <string>
#include <src/jaz/image/buffered_image.h>
#include <src/jaz/tomography/optimisation_set.h>
#include <src/jaz/tomography/tomogram_set.h>
class Tomogram;
class ParticleSet;
class AberrationsCache;
class ParticleIndex;
class ... |
40b4062afcec0739e445e50772ccb555eb4efa5c3c7e84175bfba1cfdac9d86b | C/C++ | 1,165 | 41 | #pragma once
#include <ATen/core/IListRef.h>
#include <ATen/core/Tensor.h>
#include <c10/core/DeviceGuard.h>
#include <c10/core/ScalarType.h> // TensorList whyyyyy
namespace at {
// Are you here because you're wondering why DeviceGuard(tensor) no
// longer works? For code organization reasons, we have temporarily(?... |
07aab7a92c35a83434081200f5d150b66326c3e3c10f939c954387fc43dfdc36 | C/C++ | 1,167 | 24 | // ----------------------------------------------------------------------------
// Numerical diagonalization of 3x3 matrcies
// Copyright (C) 2006 Joachim Kopp
// ----------------------------------------------------------------------------
// This library is free software; you can redistribute it and/or
// modify it u... |
90a796893433f6fd672f4a90bfb07fb09e61d5c7074d45b8f132b48aad57bf2b | C/C++ | 1,167 | 24 | // ----------------------------------------------------------------------------
// Numerical diagonalization of 3x3 matrcies
// Copyright (C) 2006 Joachim Kopp
// ----------------------------------------------------------------------------
// This library is free software; you can redistribute it and/or
// modify it u... |
a6d319fe8f4ec179dfb12d19b80a0f669accbf479361a9d3297f40ee2a61487b | C/C++ | 1,167 | 24 | // ----------------------------------------------------------------------------
// Numerical diagonalization of 3x3 matrcies
// Copyright (C) 2006 Joachim Kopp
// ----------------------------------------------------------------------------
// This library is free software; you can redistribute it and/or
// modify it u... |
c47e6c675bc80baed8d3540cc52bd2099a80800ac413add4f397a6915b5d0d8a | C/C++ | 1,167 | 24 | // ----------------------------------------------------------------------------
// Numerical diagonalization of 3x3 matrcies
// Copyright (C) 2006 Joachim Kopp
// ----------------------------------------------------------------------------
// This library is free software; you can redistribute it and/or
// modify it u... |
deb927b16d9a6f3d4afe59175258a9afcdf73007990fc1392204c1387fbab00f | C/C++ | 1,167 | 24 | // ----------------------------------------------------------------------------
// Numerical diagonalization of 3x3 matrcies
// Copyright (C) 2006 Joachim Kopp
// ----------------------------------------------------------------------------
// This library is free software; you can redistribute it and/or
// modify it u... |
24ac273476b31ad3cc06766bd26ff0f53c50044c06169215a425a2d128cc9938 | C/C++ | 1,168 | 26 | #define CP_FILE_OPEN_ERROR 10000
#define CP_FILE_CLOSE_ERROR 10001
#define CP_FILE_EOF_ERROR 10002
#define CP_FILE_READ_ERROR 10003
#define CP_FILE_WRITE_ERROR 10004
#define CP_FILE_POS_ERROR 10005
#define CP_FILE_REF FILE*
#if ( __WORDSIZE == 64 ) || defined (__APPLE__)
#define IGORLONG int
#else
... |
0eea50009d42844a1e5233ca60db2356a4a76d84f8e4bdba2508d12c01fcce13 | C/C++ | 1,177 | 48 | #ifndef CTF_EQUIPHASE_FIT_H
#define CTF_EQUIPHASE_FIT_H
#include <src/jaz/optimization/optimization.h>
#include <src/jaz/image/buffered_image.h>
#include <src/ctf.h>
class CtfEquiphaseFit : public Optimization
{
public:
CtfEquiphaseFit(
const BufferedImage<float>& spectrum,
double pixelSize, double volt... |
80fdd3f0d3de12dd5628ad5a3e4e0b3a4ffb85c270f738d398bcb2556376af6e | C/C++ | 1,177 | 48 | /*
* Copyright (C) 1996,2000,2008 Bernd Feige
* This file is part of avg_q and released under the GPL v3 (see avg_q/COPYING).
*/
typedef struct {
char version[8];
char patient[80];
char recording[80];
char startdate[8];
char starttime[8];
char bytes_in_header[8];
char data_format_version[44];
char nr_of_reco... |
75510cfc94050cbba19ad813bd4dfb5bbeb577874beeabea5d13e5b6d28d2f0e | C/C++ | 1,181 | 24 | // ----------------------------------------------------------------------------
// Numerical diagonalization of 3x3 matrcies
// Copyright (C) 2006 Joachim Kopp
// ----------------------------------------------------------------------------
// This library is free software; you can redistribute it and/or
// modify it u... |
c0c3689921f70df8f4abbf0fae32d5b45b4df853e8ed4278a3489f0943bee84b | C/C++ | 1,185 | 37 | #ifndef NUMPY_CORE_INCLUDE_NUMPY_UTILS_H_
#define NUMPY_CORE_INCLUDE_NUMPY_UTILS_H_
#ifndef __COMP_NPY_UNUSED
#if defined(__GNUC__)
#define __COMP_NPY_UNUSED __attribute__ ((__unused__))
#elif defined(__ICC)
#define __COMP_NPY_UNUSED __attribute__ ((__unused__))
#elif defined(__clang__)
... |
1b2537bf34f3d420c6e55a253e95565cbd1fd2fb37917b753c0b7103e8829599 | C/C++ | 1,187 | 44 | // DON'T include this except from Binary*.cu files. It should not leak into
// headers.
#pragma once
#define TORCH_ASSERT_NO_OPERATORS
#include <ATen/AccumulateType.h>
#include <ATen/Dispatch.h>
#include <ATen/native/BinaryOps.h>
#include <ATen/native/DispatchStub.h>
#include <ATen/native/TensorIterator.h>
#include <c1... |
76b0f56204569227457a2c3d9485373ecf12ff80d279e8490b421e66d8e6a527 | C/C++ | 1,191 | 34 | /***************************************************************************
*
* Author: "Jasenko Zivanov"
* MRC Laboratory of Molecular Biology
*
* This program is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foun... |
10982e595d999d5826a1e08cb3a080f08664687be1fa77b0dd599601838dba32 | C/C++ | 1,193 | 62 | #ifndef POLISH_PROGRAM_H
#define POLISH_PROGRAM_H
#include <string>
#include <src/jaz/math/t_complex.h>
#include <src/jaz/image/buffered_image.h>
#include <src/jaz/gravis/t4Matrix.h>
#include <src/jaz/tomography/motion/motion_fit.h>
#include <vector>
#include "refinement.h"
class CTF;
class AberrationsCache;
class ... |
7daf00ecef8e304b9b3188d01dbf6e98475155338152a6de197560760d8eaae6 | C/C++ | 1,194 | 47 | #ifndef SHIFT_ALIGNMENT_H
#define SHIFT_ALIGNMENT_H
#include <vector>
#include <src/jaz/gravis/t2Vector.h>
#include <src/jaz/tomography/tomogram.h>
#include <src/jaz/tomography/reference_map.h>
#include <src/jaz/optics/aberrations_cache.h>
class ShiftAlignment
{
public:
static std::vector<gravis::d2Vector> align... |
fde5e0d90fe09225478d677e652f822cc6f3f3e081e33dd01886c4f7d3eed050 | C/C++ | 1,195 | 38 | /*
* Copyright (c) Facebook, Inc. and its affiliates.
* All rights reserved.
*
* This source code is licensed under the BSD-style license found in the
* LICENSE file in the root directory of this source tree.
*/
#pragma once
#include <stddef.h>
#include <qnnpack/common.h>
#include <qnnpack/params.h>
#ifdef __... |
c11a7c47aac2229f4160514736b656caec7db107f46e848a23548920ff9f5bf9 | C/C++ | 1,206 | 44 | #pragma once
#include <ATen/core/TensorBase.h>
namespace at::detail {
TORCH_CUDA_CPP_API TensorBase empty_cuda(
IntArrayRef size,
ScalarType dtype,
std::optional<Device> device_opt,
std::optional<c10::MemoryFormat> memory_format_opt);
TORCH_CUDA_CPP_API TensorBase empty_cuda(
IntArrayRef size,
... |
faaf0c3f43d9b15bae792602fb9f99ce8a10c900bf44a3fa6f7c7c2817c30d86 | C/C++ | 1,208 | 41 | #pragma once
#include <c10/util/intrusive_ptr.h>
#include <ATen/core/jit_type_base.h>
namespace c10 {
struct Type;
using worker_id_t = int16_t;
// This abstract class contains only user-facing APIs, and will be shared
// between jit and distributed to implement TorchScript support.
class C10_EXPORT RRefInterface : ... |
db1da7ecf0b6b73c50c79808a7e1b691ee53f1dd6edc843ddd62877d609409b1 | C/C++ | 1,209 | 53 | #pragma once
#include <ATen/BlasBackend.h>
#include <ATen/core/Tensor.h>
#include <optional>
#if !defined(USE_ROCM)
#include <cuda.h>
#endif
namespace at::native {
#if !defined(USE_ROCM) && defined(CUDA_VERSION) && CUDA_VERSION >= 13030
struct cublasGroupedArgs {
cublasGroupedArgs(
const Tensor& mat1,
... |
59bdffb328b0d6971269f2b3493bebb1817103d1f906736191f4ddf539dcf49b | C/C++ | 1,212 | 33 | #pragma once
#if defined(__clang__) && (defined(__x86_64__) || defined(__i386__))
/* Clang-compatible compiler, targeting x86/x86-64 */
#include <x86intrin.h>
#elif defined(_MSC_VER)
/* Microsoft C/C++-compatible compiler */
#include <intrin.h>
#if _MSC_VER <= 1900
#define _mm256_extract_epi64(X, Y) (((uint64_t*)&X)[Y... |
4ec79a624152ad5f12acf28804a561e0077135780ea6f18566b0e3001bce2aea | C/C++ | 1,215 | 34 | /***************************************************************************
*
* Author: "Jasenko Zivanov"
* MRC Laboratory of Molecular Biology
*
* This program is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foun... |
ce8edeb12b20dc77cab76d846c12fe30a92f0f99632869a0b561e00d63065355 | C/C++ | 1,216 | 41 | #pragma once
#include <c10/util/Exception.h>
#include <c10/util/Registry.h>
#include <ATen/detail/AcceleratorHooksInterface.h>
// NB: Class must live in `at` due to limitations of Registry.h.
namespace at {
struct TORCH_API MAIAHooksInterface : AcceleratorHooksInterface {
// This should never actually be implemen... |
8ede519bd1aaafdc7347fac1533cca66eb22a10d912c7070a7e12bf1f9f90949 | C/C++ | 1,222 | 25 | // ----------------------------------------------------------------------------
// Numerical diagonalization of 3x3 matrcies
// Copyright (C) 2006 Joachim Kopp
// ----------------------------------------------------------------------------
// This library is free software; you can redistribute it and/or
// modify it u... |
d092006b5c60c8cd219c7dc01ff9d744da99d19e80579d91d3dfaee994b8cde8 | C/C++ | 1,222 | 43 | #include <ATen/Tensor.h>
#include <c10/util/ArrayRef.h>
namespace at::native::metal {
class MPSImageWrapper;
class MetalTensorImplStorage final {
class Impl;
public:
MetalTensorImplStorage() = default;
MetalTensorImplStorage(const std::vector<int64_t>& sizes);
MetalTensorImplStorage(
const std::vector... |
33884d696c7132b90d2fc24fffc91985b8b197d3b4b834072040b5117c99d0c9 | C/C++ | 1,226 | 35 | /***************************************************************************
*
* Author: "Jasenko Zivanov"
* MRC Laboratory of Molecular Biology
*
* This program is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foun... |
f28b0c1ad28db094e004589fc3e4b7b37f8663190e65940502a0bf7b723264ea | C/C++ | 1,226 | 28 | #include <stdio.h>
#include <iostream>
#include <limits>
#include <cmath>
#include <tuple>
#include <cstdint>
// ============================================================================
// Command-line log messages
// ============================================================================
void ida_log_welcom... |
22296966de6f88e9c76fc15a4aec0f22fc755c48ef00453ec67d8b0489c0b47b | C/C++ | 1,229 | 54 | #pragma once
#include <memory>
#include <type_traits>
#include <c10/util/Exception.h>
#include <c10/util/MaybeOwned.h>
namespace c10 {
// Compatibility wrapper around a raw pointer so that existing code
// written to deal with a shared_ptr can keep working.
template <typename T>
class SingletonTypePtr {
public:
... |
295a4db62c3b043412e6a1d014b2547040815cddfd8239e9974c050813aaf7c3 | C/C++ | 1,236 | 39 | /***************************************************************************
*
* Author: "Jasenko Zivanov"
* MRC Laboratory of Molecular Biology
*
* This program is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foun... |
92ba26f9c76c8cb5c735a392b1eb522f4f27f90be6d02bc901174d69574f1420 | C/C++ | 1,242 | 45 | #ifndef MPSImageWrapper_h
#define MPSImageWrapper_h
#import <ATen/native/metal/MetalCommandBuffer.h>
C10_DIAGNOSTIC_PUSH_AND_IGNORED_IF_DEFINED("-Wdeprecated-declarations")
#import <MetalPerformanceShaders/MetalPerformanceShaders.h>
C10_DIAGNOSTIC_POP()
#include <c10/util/ArrayRef.h>
namespace at {
namespace native {... |
b1798fe948bdc6128a489183238eff1f5a39045203468041f7cc1afd0ba3eb77 | C/C++ | 1,246 | 39 | /***************************************************************************
*
* Author: "Jasenko Zivanov"
* MRC Laboratory of Molecular Biology
*
* This program is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foun... |
011c0e43efb02f4db6b66445db4f50335c06355d2faba155ac71b3e69ddbc24c | C/C++ | 1,253 | 40 | /*
* Copyright (c) Facebook, Inc. and its affiliates.
* All rights reserved.
*
* This source code is licensed under the BSD-style license found in the
* LICENSE file in the root directory of this source tree.
*/
#pragma once
#include <stddef.h>
#include <stdint.h>
#include <qnnpack/common.h>
#include <qnnpack/... |
8b0b3d9e01a7f4fea210781a9a9ee026f5783c657330a0f10dd2f61611697dba | C/C++ | 1,254 | 28 | /*
* Copyright (C) 1998,2017 Bernd Feige
* This file is part of avg_q and released under the GPL v3 (see avg_q/COPYING).
*/
typedef struct {
int (*Vbackb)(void); /* Set drawing in back buffer */
int (*Vchar)(int c); /* Draw a hardware character */
int (*Vcheckkey)(void); /* Ckeck if a key was hit */
int (*Vc... |
86542c83fefe464bd2decf0e33c297cbdf71c7225b0a6f96d4061571d9ced5cc | C/C++ | 1,256 | 42 | #ifndef NUMPY_CORE_INCLUDE_NUMPY_NPY_OS_H_
#define NUMPY_CORE_INCLUDE_NUMPY_NPY_OS_H_
#if defined(linux) || defined(__linux) || defined(__linux__)
#define NPY_OS_LINUX
#elif defined(__FreeBSD__) || defined(__NetBSD__) || \
defined(__OpenBSD__) || defined(__DragonFly__)
#define NPY_OS_BSD
#ifdef... |
673fa06f4220788a481294285cb54690c7805530c04c65d6ddc7be4ec7ccfa80 | C/C++ | 1,261 | 37 | #pragma once
#include <c10/core/Device.h>
#include <c10/cuda/PeerToPeerAccess.h>
#include <c10/macros/Macros.h>
#include <cstdint>
namespace at::cuda {
namespace detail {
/// Initialize the peer-to-peer and fabric access caches.
/// Forwards to c10::cuda::detail::init_p2p_access_cache.
/// @param num_devices The n... |
b4abb6d38de2767414e8ffc8ef1cc3ad1e82dcaa20393829ef46fac9683ad875 | C/C++ | 1,262 | 49 | #ifndef MetalConvParams_h
#define MetalConvParams_h
#include <c10/util/ArrayRef.h>
namespace at::native::metal {
struct Conv2DParams final {
Conv2DParams() = default;
Conv2DParams(
c10::IntArrayRef inputSizes,
c10::IntArrayRef weightSizes,
c10::IntArrayRef padding,
c10::IntArrayRef stride... |
09d1427898b262b1f71c4f60b6a918feaccc898c6d1607a9ffaf6c5ef0681215 | C/C++ | 1,264 | 35 | /***************************************************************************
*
* Author: "Jasenko Zivanov"
* MRC Laboratory of Molecular Biology
*
* This program is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foun... |
06043dbc1200bb751f07c4b7c24045e7738d16b55709ba31b3943a53f8d9c2e9 | C/C++ | 1,265 | 50 | #pragma once
#include <ATen/native/DispatchStub.h>
#include <ATen/native/ReductionType.h>
#include <c10/core/Scalar.h>
#include <optional>
namespace at {
class Tensor;
namespace native {
using segment_reduce_lengths_fn = Tensor (*)(
ReductionType,
const Tensor&,
const Tensor&,
int64_t,
const std... |
3f4494bdca374960196206e150e6621f7a023944f977b2cb634414942addae13 | C/C++ | 1,265 | 42 | #pragma once
// Shared cubic interpolation helpers used by both GridSampler and UpSample
// kernels. Based on the Catmull-Rom spline with A=-0.75.
// See
// https://en.wikipedia.org/wiki/Bicubic_interpolation#Bicubic_convolution_algorithm
template <typename accscalar_t>
accscalar_t cubic_convolution1(accscalar_t x, a... |
3d7e6cc46ad76a8a52cb62611c3b3900e3712a75b337663e09594144bcad6c29 | C/C++ | 1,269 | 61 | #ifndef BACKPROJECT_2D_H
#define BACKPROJECT_2D_H
#include <string>
#include <src/metadata_table.h>
#include <src/jaz/image/buffered_image.h>
#include <src/jaz/single_particle/obs_model.h>
#include <src/jaz/optics/dual_contrast/dual_contrast_voxel.h>
class Backproject2D
{
public:
Backproject2D() { }
std::s... |
bdf9c332880799e46f88c2a4e485b483fcca2afc6534dd54a16c08fe1ee5c26b | C/C++ | 1,275 | 49 | #pragma once
#include <ATen/Tensor.h>
#include <ATen/Config.h>
#if AT_MKLDNN_ENABLED()
namespace at::native {
TORCH_API Tensor mkldnn_linear_pointwise(
const Tensor& input_t,
const Tensor& weight_t,
const std::optional<Tensor>& bias_opt,
std::string_view attr,
c10::List<std::optional<at::Scalar>>... |
3653287f387938984ddeea12c51ba76eb13e9d5ec1afd81fea078af5b31a52b1 | C/C++ | 1,281 | 46 | /***************************************************************************
*
* Author: "Jasenko Zivanov"
* MRC Laboratory of Molecular Biology
*
* This program is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foun... |
547137c59ba1f88da28c1953069b155080147cca4edd741e6a3309eedd08f9aa | C/C++ | 1,283 | 54 | #pragma once
#include <algorithm>
#include <atomic>
#include <cstddef>
#include <exception>
#ifdef _OPENMP
#define INTRA_OP_PARALLEL
#include <omp.h>
#endif
#ifdef _OPENMP
namespace at::internal {
template <typename F>
inline void invoke_parallel(
int64_t begin,
int64_t end,
int64_t grain_size,
cons... |
2be04569bc8f61e71cc22f8e7161d7f9acae47ee16e35b3e27382b0efae5807c | C/C++ | 1,284 | 32 | /*
* Copyright (c) Facebook, Inc. and its affiliates.
* All rights reserved.
*
* This source code is licensed under the BSD-style license found in the
* LICENSE file in the root directory of this source tree.
*/
#pragma once
#include <cpuinfo.h>
#define TEST_REQUIRES_X86_SSE2 \
d... |
4da2da7ad832f836d51b080898bf6c4582a86cce459c42635ab8a92af85cab23 | C/C++ | 1,285 | 46 | #pragma once
#include <c10/core/Allocator.h>
#include <c10/cuda/CUDACachingAllocator.h>
#include <memory>
namespace at::cuda {
// Keep BC only
using c10::CaptureId_t;
using c10::MempoolId_t;
// MemPool represents a pool of memory in a caching allocator. Currently,
// it's just the ID of the pool object maintained ... |
8e7357edb9ab0948f035f82c12d2fabbfb071bf145162418eb9d8f5b60538331 | C/C++ | 1,286 | 41 | // This program is free software; you can redistribute it and/or
// modify it under the terms of the GNU General Public License
// as published by the Free Software Foundation; either version 2
// of the License, or (at your option) any later version.
// This program is distributed in the hope that it will be use... |
54c220b568c1e1d51039140bd00c039d53bb281566198a904da1a1112292e453 | C/C++ | 1,287 | 42 | #pragma once
#include <c10/macros/Export.h>
namespace c10 {
struct TensorImpl;
}
namespace at {
class TensorBase;
// MemOverlap: Whether or not there is memory overlap
//
// No: Absolutely no memory overlap
// Yes: Absolutely yes memory overlap
// TooHard: There might be memory overlap, but it was too expensive to ... |
c3fc017e729fbd661e497eb081ff5fc40348ff06d9217e320515f0b9faff0e51 | C/C++ | 1,287 | 32 | // ----------------------------------------------------------------------------
// Numerical diagonalization of 3x3 matrcies
// Copyright (C) 2006 Joachim Kopp
// ----------------------------------------------------------------------------
// This library is free software; you can redistribute it and/or
// modify it u... |
6d12b2777518ee1c98aab8bb8fa8b980341bab8f4696285c5b467b4767f52bee | C/C++ | 1,300 | 44 | #pragma once
#include <ATen/detail/AcceleratorHooksInterface.h>
#include <c10/core/Allocator.h>
#include <c10/util/Exception.h>
#include <c10/util/Registry.h>
namespace at {
struct TORCH_API IPUHooksInterface : AcceleratorHooksInterface {
~IPUHooksInterface() override = default;
void init() const override {
... |
a8c932af1f65a131001d7dff766d089946ef44c49c6bb516e86a83b46aa102ea | C/C++ | 1,301 | 60 | #ifndef ABERRATION_ESTIMATOR_H
#define ABERRATION_ESTIMATOR_H
#include <src/image.h>
class IOParser;
class ReferenceMap;
class ObservationModel;
class AberrationEstimator
{
public:
AberrationEstimator();
void read(IOParser& parser, int argc, char *argv[]);
void init(
int verb, int nr_omp_threads,
... |
62a8a5682ed9ddb35c6bc8e673c1971da7465dfd73108fe7909aa9efaab4dc2c | C/C++ | 1,302 | 51 | #ifndef MetalTensorImpl_h
#define MetalTensorImpl_h
#include <ATen/OpaqueTensorImpl.h>
#include <ATen/WrapDimUtils.h>
#import <ATen/native/metal/MetalTensorImplStorage.h>
#import <ATen/native/metal/mpscnn/MPSImageWrapper.h>
namespace at {
template <typename OpaqueHandle>
struct TORCH_API MetalTensorImpl : public Opaq... |
01d5d82954321c4e5b95c16b027200ecc3770b0b6825fb139fa49b7a6dfb9270 | C/C++ | 1,303 | 33 | #pragma once
#include <c10/metal/common.h>
C10_METAL_CONSTEXPR uint32_t scaled_mm_tile = 32;
C10_METAL_CONSTEXPR uint32_t scaled_mm_simdgroups = 4;
C10_METAL_CONSTEXPR uint32_t scaled_mm_threads =
scaled_mm_simdgroups * c10::metal::simdgroup_size;
// K, N, storage offsets and leading strides must be multiples of t... |
494e11db9abfa50853b3d03f53ad3098f27a606de12d02258324c319916a0caa | C/C++ | 1,304 | 39 | /*
* Copyright (c) Facebook, Inc. and its affiliates.
* All rights reserved.
*
* This source code is licensed under the BSD-style license found in the
* LICENSE file in the root directory of this source tree.
*/
#pragma once
#include <stddef.h>
#include <stdint.h>
#include <qnnpack/common.h>
#include <qnnpack/... |
c143e000545bdab49837e3a5976d09c85fe27ff6a981b2706a7d2c56c3a98147 | C/C++ | 1,307 | 42 | #ifndef ACC_SETTINGS_H_
#define ACC_SETTINGS_H_
#include "src/macros.h"
#ifdef ACC_DOUBLE_PRECISION
#define XFLOAT double
#if !defined(_CUDA_ENABLED) && !defined(_HIP_ENABLED)
typedef struct{ XFLOAT x; XFLOAT y;} double2;
#endif
#define ACCCOMPLEX double2
#else
#define XFLOAT float
#if !defined(_CUDA_ENABLED)... |
d985b61b3b535877c4e3ddd55b13e1b490ef1e91310adc0597af594f093f3b33 | C/C++ | 1,308 | 49 | #pragma once
#include <c10/core/Storage.h>
#include <c10/core/StorageImpl.h>
#include <c10/util/intrusive_ptr.h>
namespace at {
class TensorBase;
// Here we define a series of utils to create/manipulate ATen backed
// c10 storage implementations.
/**
* Create a new shared memory storage impl managed by file descr... |
40a4667a50435414617b0dae227e6f20bdc1bb6c98cae395fe2c0292004e5691 | C/C++ | 1,315 | 52 | #pragma once
#include <c10/util/Exception.h>
#include <ostream>
#include <string>
namespace at {
enum class BlasBackend : int8_t { Default, Cublas, Cublaslt, Ck };
inline std::string BlasBackendToString(at::BlasBackend backend) {
switch (backend) {
case BlasBackend::Default:
return "at::BlasBackend::De... |
3d0b447de06e9b23a3d08e31c7e031e7c6519e34d59a6291c0aaa1a7eafc24e2 | C/C++ | 1,317 | 60 | #ifndef TRANSLATION_H
#define TRANSLATION_H
#include "raw_image.h"
class Translation
{
public:
template <typename T>
static void shiftInFourierSpace2D(RawImage<tComplex<T>>& img, double dx, double dy);
template <typename T>
static void shiftByHalf(RawImage<tComplex<T>>& img);
};
template <typename T>... |
b84e8aad890c59cd6768bfb96e93e18cc730660575e8c97aa8c686f8ea46a29c | C/C++ | 1,319 | 55 | #ifndef CONVERT_PROJECTIONS_PROGRAM_H
#define CONVERT_PROJECTIONS_PROGRAM_H
#include <string>
#include <vector>
#include <src/jaz/gravis/t4Matrix.h>
#include <src/jaz/gravis/t2Vector.h>
class ConvertProjectionsProgram
{
public:
ConvertProjectionsProgram(){}
int n_threads;
std::string newstComFn, tltCom... |
c6171b163a587e94972590349b5ecaa32bab6f3c7adba5a8c06cde990dd430ec | C/C++ | 1,323 | 41 | #pragma once
#include <c10/hip/HIPStream.h>
// Use of c10::hip namespace here makes hipification easier, because
// I don't have to also fix namespaces. Sorry!
namespace c10 { namespace hip {
// See Note [Masquerading as CUDA] for motivation
class HIPStreamMasqueradingAsCUDA final : public c10::cuda::CUDAStream {
... |
fb1ff8eda1233a9d19f8ede83b915946179f5879dd4716f62e057e3f87d65f04 | C/C++ | 1,328 | 38 | #pragma once
#include <c10/core/CompileTimeFunctionPointer.h>
namespace c10::impl {
namespace detail {
template <class FuncPtr, class ReturnType, class ParameterList>
class WrapFunctionIntoFunctor_ {};
template <class FuncPtr, class ReturnType, class... Parameters>
class WrapFunctionIntoFunctor_<
FuncPtr,
Ret... |
21176a8152aa27ac90c8785e3795600468aad8b61e5076c4fcb8eeda3231aa02 | C/C++ | 1,342 | 26 | #ifndef COMPUTEMATRICES_H
#define COMPUTEMATRICES_H
#include<RcppArmadillo.h>
// [[Rcpp::depends(RcppArmadillo)]]
arma::vec computeYStar (arma::mat X, arma::vec curr_beta, arma::mat Z, arma::mat Dinv,
arma::vec curr_u, arma::vec y, arma::vec offsets);
arma::mat computeVmu (arma::vec mu, double... |
8c8b419844d04a78694ee6bcc8f13f097627e610facef0b5cd3e8de1d44e0cde | C/C++ | 1,349 | 37 | /***************************************************************************
*
* Author: "Jasenko Zivanov"
* MRC Laboratory of Molecular Biology
*
* This program is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foun... |
31d14af9ca9601d4eb0865f88505ed137c93d19d4419bb7003ea80192945dd99 | C/C++ | 1,352 | 33 | /* FILE termdef */
/* Terminal (vt100, Xwindow) instructions */
/* Stderr: user interface; stdout: graphics */
#include <stdio.h>
/* ************************ VT100 (TEXT) *************************** */
/* Erasing */
#define Erase_ToBottom fputs("\033\1330J", stderr)
#define Erase_FromTop fputs("\033\133... |
462990cb14552b001e309020f3d84f8d1de4815e7b0488a4122c08db87d27abe | C/C++ | 1,352 | 22 | #pragma once
#include <ATen/core/Tensor.h>
#include <ATen/native/DispatchStub.h>
#include <ATen/native/ReductionType.h>
namespace at::native {
using spmm_reduce_fn = void(*)(const Tensor&, const Tensor&, const Tensor&, const Tensor&, const Tensor&, ReductionType op);
using spmm_reduce_arg_fn = void(*)(const Tensor&,... |
53a50512a27f34da1fc6e939207ef0767949dec34df24c7c8cfa0540f8fd56d3 | C/C++ | 1,369 | 49 | #pragma once
#include <c10/metal/common.h>
#ifdef __METAL__
enum class EmbeddingBagMode { SUM = 0, MEAN, MAX };
#else
#include <ATen/native/EmbeddingBag.h>
using at::native::EmbeddingBagMode;
#endif
template <typename idx_type_t = uint32_t>
struct EmbeddingBagParams {
::c10::metal::array<idx_type_t, 2> weight_strid... |
1387650b6bb4bcac8315583f93130072d263aadf5ffdf27092e5edba45760a15 | C/C++ | 1,377 | 57 | /* Autogenerated v4-0-0 from https://github.com/scottprahl/iad */
#define MAX_QUAD_PTS 128
#define DEFAULT_QUAD_PTS 4 \
#define ISOTROPIC 0
#define HENYEY_GREENSTEIN 1 \
#define DIAMOND 0
#define INFINITESIMAL_GENERATOR 1 \
#define MARTIN_HAMMER 1 \
#define CONE 1
#define OBLIQUE 0 \
typedef struct AD_slab_type {... |
ffab2d0101b0824ce21dba265b3c5c689c8c1dfc341f39bfe70f243470552edc | C/C++ | 1,382 | 55 | #pragma once
#include <c10/metal/common.h>
template <typename index_t = int64_t>
struct NLLLossBackwardParams {
index_t n_classes;
index_t map_size;
index_t batch_stride;
index_t class_stride;
index_t grad_input_offset;
index_t grad_output_offset;
index_t target_offset;
index_t weight_offset;
index_t... |
13935d38b00e148d9501a6d8e7a85ba40e6a31cb25eefec216e1e5eea9d435f6 | C/C++ | 1,396 | 36 | /*
* Copyright (C) 1992,1993,1998,2000,2003,2013 Bernd Feige
* This file is part of avg_q and released under the GPL v3 (see avg_q/COPYING).
*/
/*
* mfx_data_format.h
*
*
* This header file is for data information dealing with the Munster File eXchange format (MFX)
*
* NOTE :
*
* This header file MU... |
12dd534a3d45e9b41cca76d02b18bc980c8acffab42734332ce4b5a87a0fba16 | C/C++ | 1,398 | 40 | #pragma once
#include <ATen/core/Tensor.h>
namespace at::native::preprocessing {
/**
* This function will take nested query, key, and value
* and will preprocess it in order to run with either
* the flash-attention or efficient-attention kernels.
* @return A tuple containing all the necessary data for running the... |
d4c662c293120b34b54aca392b6bbf2632d979eaaa069184e47c9f281c003bd1 | C/C++ | 1,398 | 56 | #ifndef _pl_h
#define _pl_h
#include <stdarg.h>
#include <stdio.h>
int devicePL (va_list *args);
int openplPL (void);
int closeplPL (void);
int flushplPL (void);
int spacePL (int x0, int y0, int x1, int y1);
int colorPL (int red, int green, int blue);
int bkgndPL ... |
3f0c09770037e7a5a0dd45b9c270ade6ee5997559d1acd98ff2e7fd449efa413 | C/C++ | 1,405 | 56 | /*
* Copyright (C) 2020 Bernd Feige
* This file is part of avg_q and released under the GPL v3 (see avg_q/COPYING).
*/
/* Header definition for the sigma PLpro format
* Helpful information obtained from biosig4c++ http://biosig.sf.net/
* -- Bernd Feige 14.08.2020 */
#include "transform.h"
typedef struct {
cha... |
ec34c9bae2ede43cfa14c0676e302e6aa540d240dbf299d4ef927e7a687a60a6 | C/C++ | 1,408 | 41 | #pragma once
#include <ATen/core/Tensor.h>
namespace at::native {
inline ScalarType first_type() {
return ScalarType::Undefined;
}
template <typename... Args>
inline ScalarType first_type(const Tensor& arg, const Args&... parameters) {
return arg.defined() ? arg.scalar_type() : first_type(parameters...);
}
tem... |
4e122c22703253ae5d6ae333cb5190cf4f824eb2efe314c76bf2d74d5e73c16b | C/C++ | 1,416 | 43 | //********************************************************************************************************************
// Processor.h
//********************************************************************************************************************
#include "FileDataBucket.h"
#include "GeneralOperations.h"
const i... |
17700c2ac1ccb20df02c88c21ab88733c384bfafab342bf4eb2609cb3e93d74c | C/C++ | 1,425 | 38 | #pragma once
#include <ATen/core/Tensor.h>
#include <ATen/native/DispatchStub.h>
namespace at::native {
using batch_norm_fn = void (*)(Tensor&, const Tensor&, const Tensor&,
const Tensor&, const Tensor&, const Tensor&, const Tensor&, const Tensor&, bool, double);
using batch_norm_collect_stats_fn = void (*)(Tens... |
20ec40861a9395f216da822abd8e578b6f1bdff9ca425e976c714cf37f143d01 | C/C++ | 1,432 | 41 | #pragma once
#include <c10/util/TypeTraits.h>
namespace c10::impl {
namespace detail {
template <class FuncType, class ReturnType, class ParameterList>
class WrapFunctionIntoRuntimeFunctor_ {};
template <class FuncType, class ReturnType, class... Parameters>
class WrapFunctionIntoRuntimeFunctor_<
FuncType,
R... |
0ca24382c12411151a134e8eb895b3d085f9a9ec7668a2ac65366735fc4908fd | C/C++ | 1,439 | 67 | #ifndef IMOD_IMPORT_H
#define IMOD_IMPORT_H
#include <string>
#include <vector>
#include <src/jaz/gravis/t4Matrix.h>
#include <src/jaz/gravis/t2Vector.h>
class ImodImport
{
public:
class Mapping
{
public:
std::vector<gravis::d4Matrix> projections;
int w, h, d;
bool framesMissing;
std::... |
659f3802127baa847a30017962a7e9bfc85d48ba4022143b14212cc794515adb | C/C++ | 1,443 | 43 | #pragma once
#include <detail/oneDNN.h>
//
// This header file provides utility functions for constructing and managing
// oneDNN attributes used in fusion operations on XPU devices. These utilities
// include functions for creating unary and binary post-operations attributes,
// as well as mapping string representati... |
f7745b317c0ff6160c8d94273d7d03d9782354453443703ee18b34a84161cd55 | C/C++ | 1,443 | 63 | #ifndef REFINEMENT_PROGRAM_H
#define REFINEMENT_PROGRAM_H
#include <string>
#include <src/jaz/math/t_complex.h>
#include <src/jaz/image/buffered_image.h>
#include <src/jaz/gravis/t4Matrix.h>
#include <vector>
#include <src/jaz/tomography/tomogram.h>
#include <src/jaz/tomography/tomogram_set.h>
#include <src/jaz/tomogr... |
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