sha256 stringlengths 64 64 | language stringclasses 27
values | size int32 1 491k | lines int32 1 21.8k | content stringlengths 1 200k |
|---|---|---|---|---|
41f3672f746157a079d47e3237d6bf0f1b99021fcc1550fdbf051141474c8639 | C/C++ | 3,207 | 115 | // v = v+M*x
inline static
void addmult(tVectorView<__GMBD_REAL> &v, const tConstMatrixView<__GMBD_REAL> &M, const tConstVectorView<__GMBD_REAL> &x)
{
GRAVIS_CHECK( v.size() == M.h, "v and M are incompatible");
GRAVIS_CHECK( x.size() == M.w, "M and x are incompatible");
for (size_t j=0; j<M.w; ++j)
for (siz... |
ed68e23a82be9cc3ae1298c39a8bf7c7477e185fb875441639cd86467195b696 | C/C++ | 3,216 | 81 | #pragma once
#include <ATen/Tensor.h>
#include <ATen/TensorUtils.h>
#include <ATen/core/List.h>
#include <c10/core/TensorOptions.h>
/*
* [Note: hacky wrapper removal for optional tensor]
*
* The kernel implementation takes an optional tensor marked in the schema as
* Tensor? but the C++ function takes Tensor inst... |
456c3afb68ecb0ccbfdf369ecdf33a41d9aaed50ebb81c1b8061a889a33b0ef1 | C/C++ | 3,230 | 88 | #pragma once
#include <ATen/core/List.h>
#include <ATen/core/Tensor.h>
#include <c10/core/impl/TorchDispatchModeTLS.h>
#ifndef AT_PER_OPERATOR_HEADERS
#include <ATen/Functions.h>
#else
#include <ATen/ops/equal.h>
#endif
namespace at {
// Note [Tensor-subclass-like Tensors]
// Tensor-subclass-like is defined as:
// -... |
a963794d6c65b1cf86a4862e7409819637a28aea89aac598b3cb5279f12f83a7 | C/C++ | 3,239 | 107 | #pragma once
#include <ATen/cuda/CUDAConfig.h>
#include <optional>
#if AT_MAGMA_ENABLED()
#include <magma_types.h>
#include <magma_v2.h>
#endif
namespace at {
namespace native {
#if AT_MAGMA_ENABLED()
// RAII for a MAGMA Queue
struct MAGMAQueue {
// Default constructor without a device will cause
// destroying... |
23f0ad671e6fac17f6933a1359098a717d28f54e16fc3189129bac7052734961 | C/C++ | 3,242 | 90 | #pragma once
#include <ATen/Tensor.h>
#include <c10/core/QScheme.h>
#ifdef USE_PYTORCH_QNNPACK
// TODO: Refacto QnnpackUtils.h so as to separate code
// needed for quantized op from the generic qnnpack specific
// quantization utilities.
#include <ATen/native/ao_sparse/quantized/cpu/packed_params.h>
#include <ATen/na... |
6bd1366fa13a96f863bda34ae51d729b873a6d977edee463de5853b78607b1b9 | C/C++ | 3,247 | 108 | #pragma once
#include <type_traits>
#include <unordered_map>
#include <ATen/core/dynamic_type.h>
#include <ATen/core/jit_type_base.h>
#include <c10/macros/Macros.h>
namespace c10 {
template <typename T>
struct TORCH_API TypeFactoryBase {};
template <>
struct TORCH_API TypeFactoryBase<c10::DynamicType> {
template... |
cfc9a27c22c54bff32e6d70fbf8c8c7abec3feb93ff7bb1f524e5359f8e4e517 | C/C++ | 3,247 | 84 | #pragma once
#include <ATen/ATen.h>
#include <ATen/Tensor.h>
#include <ATen/dlpack.h>
// this converter will:
// 1) take a Tensor object and wrap it in the DLPack tensor
// 2) take a dlpack tensor and convert it to the ATen Tensor
namespace at {
TORCH_API ScalarType toScalarType(const DLDataType& dtype);
TORCH_API ... |
2c8e66675981160e4816d2707490ecf7c71df2d58eba722e1a2951beb697a36c | C/C++ | 3,252 | 144 | #ifndef LINEAR_2D_DEFORMATION_MODEL_H
#define LINEAR_2D_DEFORMATION_MODEL_H
#include <src/jaz/gravis/t2Vector.h>
#include <src/jaz/tomography/motion/2D_deformation.h>
class Linear2DDeformationModel
{
public:
Linear2DDeformationModel();
Linear2DDeformationModel(
const Deformation2D::Parameters& para... |
36dc68d3837a547b7add21c50e5041691d4efbb0237fbbe985c1e5832adb71b2 | C/C++ | 3,258 | 177 | #ifndef ACC_DATA_TYPES_H_
#define ACC_DATA_TYPES_H_
#include "src/acc/acc_ptr.h"
#include "src/multidim_array.h"
namespace AccDataTypes
{
template <typename T>
class Image : public AccPtr<T>
{
private:
int x,y,z;
bool fourier; //Is this a Fourier space data array
public:
/*======================================... |
e872602c2b7c1ac5790eeeecf4a6d7782f391ec9da079d0441d193d0520ea2b8 | C/C++ | 3,261 | 118 | /***************************************************************************
*
* Author: "Jasenko Zivanov"
* MRC Laboratory of Molecular Biology
*
* This program is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foun... |
db11d61ee5eeb407018801533bacad642f0bf76b304acbf730a675d1b7c21b08 | C/C++ | 3,268 | 97 | #pragma once
#include <ATen/core/Tensor.h>
#include <ATen/Parallel.h>
#include <ATen/native/DispatchStub.h>
#include <ATen/native/Pool.h>
namespace at::native {
inline void check_max_pool1d(
const Tensor& self,
IntArrayRef kernel_size,
IntArrayRef stride,
IntArrayRef padding,
IntArrayRef dilation... |
cd401404539e5a3c0fefbf7e91f220e7c283a0210e8fa746ecc991b0bf701c51 | C/C++ | 3,280 | 107 | /***************************************************************************
*
* Author: "Sjors H.W. Scheres"
* MRC Laboratory of Molecular Biology
*
* This program is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software F... |
dd80d70449499973c8376d5e998187b873b9c0000f6ab6982067c388e70e9bee | C/C++ | 3,292 | 98 | #pragma once
#include <c10/metal/common.h>
#ifdef __METAL_VERSION__
// Must match at::native::detail::GridSamplerInterpolation
enum class GridSamplerInterpolation : int32_t {
Bilinear = 0,
Nearest = 1,
Bicubic = 2,
};
// Must match at::native::detail::GridSamplerPadding
enum class GridSamplerPadding : int32_t {... |
153b34636498ac93a9e0b5e8c4fab1c65972b46da0f923b8500d8965586c7310 | C/C++ | 3,293 | 84 | #pragma once
#include <string>
#include <stdexcept>
#include <sstream>
#include <c10/core/ScalarType.h>
#include <c10/util/ArrayRef.h>
#include <c10/util/Exception.h>
#include <ATen/native/DispatchStub.h>
#include <ATen/core/TensorBase.h>
namespace at::native {
// Normalization types used in _fft_with_size
enum clas... |
51037a7607de92b5261071b64cd45a974370231f1650dce9c8b266dbca84ba55 | C/C++ | 3,307 | 129 | #ifndef ACC_PROJECTOR_PLAN_H_
#define ACC_PROJECTOR_PLAN_H_
#include <vector>
#include "src/acc/acc_ptr.h"
#include "src/healpix_sampling.h"
#include <iostream>
#include <fstream>
#ifdef _SYCL_ENABLED
#include "src/acc/sycl/sycl_virtual_dev.h"
using deviceStream_t = virtualSYCL*;
#endif
class AccProjectorPlan
{
publi... |
a511fcc5478457d35546cb2a132ad973b4ddabbe44cc22f568c773c109127b16 | C/C++ | 3,310 | 109 | // This program is free software; you can redistribute it and/or
// modify it under the terms of the GNU General Public License
// as published by the Free Software Foundation; either version 2
// of the License, or (at your option) any later version.
// This program is distributed in the hope that it will be useful,
... |
dbc743d0397d2b11039cff911229d5df50c96cfedd6e81e295e03a09bb7ae86e | C/C++ | 3,321 | 146 | #ifndef CUDA_ML_OPTIMISER_H_
#define CUDA_ML_OPTIMISER_H_
#include "src/mpi.h"
#include "src/ml_optimiser.h"
#include "src/acc/cuda/cuda_mem_utils.h"
#include "src/acc/acc_projector_plan.h"
#include "src/acc/acc_projector.h"
#include "src/acc/acc_backprojector.h"
#include "src/acc/cuda/cuda_fft.h"
#include "src/acc/cu... |
60607e9b765092c128f5a0746ab060f52cf373e74d4d560dab4b60ac68649af2 | C/C++ | 3,340 | 154 | /***************************************************************************
*
* Author: "Sjors H.W. Scheres"
* MRC Laboratory of Molecular Biology
*
* This program is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software F... |
b416ecdfa3780c8aec54effd0d8f632be08b894b179357653b030552cb303f9d | C/C++ | 3,342 | 150 | /******************************************************************************
** Title: tRefCPtr.h
** Description: Smart pointer implementation using reference counting.
**
** Author: Jean-Sebastien Pierrard, 2005
** Computer Science Department, University Basel (CH)
**
*******************... |
308542a8da1c21241557e8d34e97839212466bc1c4e77d1d7d5db7e75b6c0cc8 | C/C++ | 3,380 | 133 | /*
* ANSI C implementation of vector operations.
*
* Copyright (c) 2007-2010 Naoaki Okazaki
* All rights reserved.
*
* Permission is hereby granted, free of charge, to any person obtaining a copy
* of this software and associated documentation files (the "Software"), to deal
* in the Software without restr... |
c1fa5ca81e8145fafcf212e0ed97d4e7ba5a02315c55ed0233eafd9a3c9594ba | C/C++ | 3,382 | 119 | /***************************************************************************
*
* Author: "Jasenko Zivanov"
* MRC Laboratory of Molecular Biology
*
* This program is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foun... |
a0cb7b8b3e109ccfe4c4e03a0e8f97611d77ceb4cbdaef561360180dffc4960a | C/C++ | 3,390 | 144 | #ifndef __LIBGRAVIS_NTUPLE_H__
#define __LIBGRAVIS_NTUPLE_H__
/******************************************************************************
** Title: NNTuple.h
** Description: N-NTuples (templated)
**
** Author: Brian Amberg 2006
** Computer Science Department, University Basel (CH)
... |
36f092edc9f72ace3919c753965875a30ff4b2de65aae2484f0b3787e671edcb | C/C++ | 3,397 | 101 | // This program is free software; you can redistribute it and/or
// modify it under the terms of the GNU General Public License
// as published by the Free Software Foundation; either version 2
// of the License, or (at your option) any later version.
// This program is distributed in the hope that it will be use... |
036e2b7cc545a7228bc1523e30c4d8d15b3690e6dadfbf31654861de0edb9f13 | C/C++ | 3,399 | 135 | // This file is part of Eigen, a lightweight C++ template library
// for linear algebra.
//
// Copyright (C) 2015 Benoit Steiner <benoit.steiner.goog@gmail.com>
//
// This Source Code Form is subject to the terms of the Mozilla
// Public License v. 2.0. If a copy of the MPL was not distributed
// with this file, You ca... |
7013b8f60f149184b35888e5f6071b3e626d5eff0fb5fd9d4272ae693795b9f2 | C/C++ | 3,401 | 119 | #ifndef __GRAVIS__IO__MESH__ABSOLUTE_PATHS__
#define __GRAVIS__IO__MESH__ABSOLUTE_PATHS__
#define BOOST_FILESYSTEM_VERSION 3
#include <boost/filesystem/convenience.hpp>
#include <boost/filesystem/operations.hpp>
#include "../../tMesh.h"
#include "../../Mesh.h"
namespace gravis
{
namespace io
{
namespace mesh_... |
1aed389fd7b17d60398f1ca7d22441e5a0536258e5b20d137082d6207b717815 | C/C++ | 3,414 | 112 | /*
* This file is part of Healpix_cxx.
*
* Healpix_cxx is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation; either version 2 of the License, or
* (at your option) any later version.
*
* Healpix_cxx is... |
f8bab060ad3d150c3a98872b03adf247d591d0053f6c77b27069e813414dd2aa | C/C++ | 3,431 | 115 | /*
* This file is part of Healpix_cxx.
*
* Healpix_cxx is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation; either version 2 of the License, or
* (at your option) any later version.
*
* Healpix_cxx is... |
ce7c62cbe2acd90d4564c38062f155855704f187a9e350bba02de6241fc216a9 | C/C++ | 3,432 | 116 | /***************************************************************************
*
* Author: "Jasenko Zivanov"
* MRC Laboratory of Molecular Biology
*
* This program is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foun... |
11d14c352d4a9fbe88fd2df3d9cfcb9c1e709ae942140b7b44686502c32deca4 | C/C++ | 3,438 | 82 | #ifndef _SYCL_VIRTUAL_DEVICE_RELION_H
#define _SYCL_VIRTUAL_DEVICE_RELION_H
#include <cstdint>
#include <string>
#include "src/acc/settings.h"
enum class syclMallocType {device, host};
enum class syclBackendType {openCL, levelZero, CUDA, HIP, host};
enum class syclDeviceType {gpu, cpu, fpga, host};
enum class syclDev... |
6d57edb248bb71dcd59b55e87297ac082d3598aa6ec35d012bb7ff3035255775 | C/C++ | 3,439 | 81 | // Copyright (c) Facebook, Inc. and its affiliates.
// All rights reserved.
//
// This source code is licensed under the BSD-style license found in the
// LICENSE file in the root directory of this source tree.
#pragma once
#include <ATen/ATen.h>
#include <ATen/core/op_registration/op_registration.h>
#include <torch/l... |
6f021c8275e0422b8bfed1223ad06ab65a5bb3158e18b8ca567175131f21d579 | C/C++ | 3,442 | 150 | /* Portions of this code are under:
Copyright (c) 2022 Advanced Micro Devices, Inc. All rights reserved.
*/
#ifndef HIP_ML_OPTIMISER_H_
#define HIP_ML_OPTIMISER_H_
#include "src/mpi.h"
#include "src/ml_optimiser.h"
#include "src/acc/hip/hip_mem_utils.h"
#include "src/acc/acc_projector_plan.h"
#include "src/acc/acc_... |
ea81d7cb34250eb90dec2aae846399ad66914244f4f7b51bba0f99daed790b67 | C/C++ | 3,445 | 110 | #pragma once
namespace c10 {
inline BoxedKernel::BoxedKernel() : boxed_kernel_func_(nullptr) {}
inline BoxedKernel::BoxedKernel(
std::unique_ptr<OperatorKernel> functor,
InternalBoxedKernelFunction* boxed_kernel_func)
: functor_(std::move(functor)), boxed_kernel_func_(boxed_kernel_func) {}
template <Box... |
ef80eafdf284e133eff1cd2dfd8d851f1f2a020cc25bdb6f4c2fae77f29b266c | C/C++ | 3,449 | 117 | // This file is part of Eigen, a lightweight C++ template library
// for linear algebra.
//
// Copyright (C) 2014-2019 Gael Guennebaud <gael.guennebaud@inria.fr>
//
// This Source Code Form is subject to the terms of the Mozilla
// Public License v. 2.0. If a copy of the MPL was not distributed
// with this file, You c... |
219d37148a6acccc67d82c4a67b7d41c73e1f888d8dd0de064b54ed1c99d1db8 | C/C++ | 3,452 | 98 | /***************************************************************************
*
* Author: "Jasenko Zivanov"
* MRC Laboratory of Molecular Biology
*
* This program is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foun... |
5a3ded388ec6a7a0b4dcbab74b6bff19970dd218bf4d3dc84d965fc6e12d0462 | C/C++ | 3,454 | 33 | #pragma once
#include <ATen/OpMathType.h>
#include <ATen/hip/HIPBlas.h>
namespace at::native {
void bgemm_kernel_bf16bf16bf16_256_256x256x32_32x32_4x4_8x32x1_8x32x1_1x16x1x16_4_Intrawave_v4(CUDABLAS_BGEMM_ARGTYPES(at::BFloat16));
void bgemm_kernel_bf16bf16bf16_256_256x256x32_32x32_4x4_16x16x1_16x16x1_1x16x1x16_4_Intr... |
dddf5fc982e7d25f9ba38fe1ebd6645fb8851485f25fd5e975822ae90828635a | C/C++ | 3,459 | 98 | #pragma once
#include <ATen/core/TensorAccessor.h>
#include <ATen/NumericUtils.h>
namespace at::native {
#ifdef CPU_CAPABILITY
inline namespace CPU_CAPABILITY {
#else
inline namespace DEFAULT {
#endif
// Core topk loop, shared between CPU and QuantizedCPU
template <typename scalar_t, typename accscalar_t>
void topk_... |
80537464461e73c706714420debeb1ab48757c2f5ef96596dfca5592266fab06 | C/C++ | 3,474 | 101 | #ifndef TOMO_BP_PROGRAM_H
#define TOMO_BP_PROGRAM_H
#include <string>
#include <vector>
#include <src/filename.h>
#include <src/time.h>
#include <src/jaz/gravis/t4Matrix.h>
#include <src/jaz/gravis/t2Vector.h>
#include <src/jaz/optics/damage.h>
#include <src/jaz/optimization/optimization.h>
#include <src/jaz/tomograph... |
35a5fa6c1b78738d819707096c22845dfed04bc9a07d78e50f3bf49c2754960a | C/C++ | 3,485 | 113 | #ifndef _multi_plot_h
#define _multi_plot_h
#ifdef __cplusplus
extern "C" {
#endif
/*
* Multiple Device Plot Library
*
* This is a plot(4) API compliant library that allows a single
* program to switch between output devices. It does so by use of a
* single extension function device() (see below).
*/
#include... |
df780133faf598f3412c999bc18e8e3fed122daf3f2fec6b133fe4bea60fb528 | C/C++ | 3,485 | 126 | /***************************************************************************
*
* Author: "Jasenko Zivanov"
* MRC Laboratory of Molecular Biology
*
* This program is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foun... |
429ee10110145e2648554680969d2ff0e19ad496eb370b5cdf37a747495c2187 | C/C++ | 3,494 | 118 | #pragma once
#include <ATen/cpu/vec/intrinsics.h>
#include <c10/util/Exception.h>
#include <torch/headeronly/cpu/vec/vec_half.h>
namespace at::vec {
// See Note [CPU_CAPABILITY namespace]
inline namespace CPU_CAPABILITY {
// Transpose a [2, 32] matrix to [32, 2]
// Note: the output leading dimension should be 2,
//... |
e7cad08f4a1a9affe0cc2bd8997f2c6b1c7715c876a67e0a0e992e53a3dc92b7 | C/C++ | 3,505 | 88 | /******************************************************************************
** Title: tImage/traits.h
** Description: tImage traits neccessary for nice implementation of stuff
** like convolution
**
** Author: Brian Amberg
** Computer Science Department, University Basel (C... |
fe3c3bf70a40e88d9f380636ee5f9bb7c045c6cbc601aea875c02e631c4f4862 | C/C++ | 3,508 | 125 | #ifndef _VITAPORT_H_INCLUDED
#define _VITAPORT_H_INCLUDED
enum vitaport_filetypes {
VITAPORT1_FILE=0,
VITAPORT2_FILE,
VITAPORT2RFILE
};
/* These are guesses, I've seen that 4 is also unsigned */
enum VITAPORT_DATYPES {
VP_DATYPE_SIGNED=0,
VP_DATYPE_UNSIGNED=5,
VP_DATYPE_MARKER=130
};
enum VITAPORT_DASIZES {
VP_... |
5c99226798f8c51bd1695d03c30e2585bc581d22ea77964ae96843c8f9187b70 | C/C++ | 3,509 | 145 | #ifndef SPA_EXTRACTION_H
#define SPA_EXTRACTION_H
#include <src/metadata_table.h>
#include <src/image.h>
#include <src/jaz/image/raw_image.h>
#include <src/jaz/gravis/t2Vector.h>
#include <src/jaz/single_particle/parallel_ft.h>
#include <src/jaz/single_particle/img_proc/filter_helper.h>
#include <vector>
class SpaEx... |
f2225edb3574d7b7b7348de412eb50251b3abf4276f5f289a0558d07fe036542 | C/C++ | 3,510 | 114 | #pragma once
#include <ATen/core/function_schema.h>
#include <ATen/core/ivalue.h>
#include <ATen/core/qualified_name.h>
#include <c10/util/Exception.h>
#include <c10/util/FunctionRef.h>
namespace c10 {
struct FunctionSchema;
}
namespace at {
TORCH_API void launch(std::function<void()> func);
}
namespace torch::jit ... |
6b0869b352a7f14f700dd69503d35eabaeba65a2a931bb6792ca5c2da56cffc8 | C/C++ | 3,515 | 73 | #pragma once
#include <ATen/native/DispatchStub.h>
#include <ATen/native/Gelu.h>
#include <c10/util/Exception.h>
namespace c10 {
class Scalar;
}
namespace at {
struct TensorIterator;
struct TensorIteratorBase;
class TensorBase;
}
namespace at::native {
using structured_activation_fn = void (*)(TensorIteratorBase&)... |
6228078d6da8ec1cee1d8884c0a4a181848ed2681387ede1bdb8a3eb90e0d6e9 | C/C++ | 3,517 | 87 | //***********************************************************************************************
//
// Written 1990 - 1996 by AXON Instruments Inc.
// ... |
97ee6a0a1f00d4e9015090077517ff7923a32d7cf6ea78995b44020094fce7e8 | C/C++ | 3,517 | 88 | /***************************************************************************
*
* Author: "Jasenko Zivanov"
* MRC Laboratory of Molecular Biology
*
* This program is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foun... |
ee57e1e04f4acd2e0f07dbe3b18441975e690fd25d18f71ab0d6e0838e53f894 | C/C++ | 3,517 | 119 | /*
* Copyright (c) Facebook, Inc. and its affiliates.
* All rights reserved.
*
* This source code is licensed under the BSD-style license found in the
* LICENSE file in the root directory of this source tree.
*/
#pragma once
#include <assert.h>
#include <limits.h>
#include <stdbool.h>
#include <stdint.h>
#incl... |
470e961d725b9f2b04800f5fd5cc0fe725a891723a90af476b0fa2dade6862ec | C/C++ | 3,529 | 67 | // dear imgui: Renderer Backend for modern OpenGL with shaders / programmatic pipeline
// - Desktop GL: 2.x 3.x 4.x
// - Embedded GL: ES 2.0 (WebGL 1.0), ES 3.0 (WebGL 2.0)
// This needs to be used along with a Platform Backend (e.g. GLFW, SDL, Win32, custom..)
// Implemented features:
// [X] Renderer: User texture b... |
e7e4d4478a2f1a31f67184751519a516db37f73bdc7ae006961b644b27bb30d4 | C/C++ | 3,529 | 125 | /***************************************************************************
* Author: "Jasenko Zivanov"
*
* Derived from Sjors' SpaBackproject:
*
*
* Author: "Sjors H.W. Scheres"
* MRC Laboratory of Molecular Biology
*
* This program is free software; you can redistribute it and/or modify
* it under the term... |
6c4f1c02f16f0cfb37d008de963bdccd3364bf4e85d197a17f50d8a34c9bfa28 | C/C++ | 3,530 | 110 | /***************************************************************************
*
* Author: "Jasenko Zivanov"
* MRC Laboratory of Molecular Biology
*
* This program is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foun... |
f879ce607074fd792327696185abdad8ee1e136f435517743d55bc7c542a7b02 | C/C++ | 3,544 | 108 | // This program is free software; you can redistribute it and/or
// modify it under the terms of the GNU General Public License
// as published by the Free Software Foundation; either version 2
// of the License, or (at your option) any later version.
// This program is distributed in the hope that it will be use... |
42a266f904bacc372b5e0c04508eb85e8c56e56e6b764638ebfdd643493f0b01 | C/C++ | 3,563 | 100 | #pragma once
#include <ATen/Tensor.h>
#include <ATen/Config.h>
namespace at {
namespace native {
class QConvoneDNN final {
public:
TORCH_API static at::Tensor run_pointwise(
at::Tensor act, // contains quantized values but not QTensor
double act_scale,
int64_t act_zero_point,
at::Tensor we... |
2ca1246140e04a91adb29e552175c2e1b9a7af6a22429df11c1c6377af2ffdce | C/C++ | 3,572 | 138 | #pragma once
#include <ATen/EmptyTensor.h>
#include <ATen/Formatting.h>
#include <ATen/core/ATenGeneral.h>
#include <ATen/core/Generator.h>
#include <c10/core/ScalarType.h>
#include <c10/core/StorageImpl.h>
#include <c10/core/UndefinedTensorImpl.h>
#include <c10/util/ArrayRef.h>
#include <c10/util/Exception.h>
#includ... |
0c599f35ff9e84b0acf51ee6121c235a9a23366c560b991e50ac5b4b6312aae6 | C/C++ | 3,579 | 111 | #pragma once
#include <ATen/Config.h>
#include <ATen/Tensor.h>
namespace at::native::xpu {
class QConvoneDNNXPU final {
public:
C10_API static at::Tensor run_pointwise(
at::Tensor act,
double act_scale,
int64_t act_zero_point,
at::Tensor weight,
at::Tensor weight_scales,
at::Ten... |
55716c62376ac3b6983e010d68674e8c0cdd4fdedf55bf5c1e44d5f221f272c6 | C/C++ | 3,619 | 82 | /*
* Copyright (c) Facebook, Inc. and its affiliates.
* All rights reserved.
*
* This source code is licensed under the BSD-style license found in the
* LICENSE file in the root directory of this source tree.
*/
#pragma once
#include <stddef.h>
#include <stdint.h>
#include <qnnpack/common.h>
#include <qnnpack/... |
7aa13c253679278e2a70e8831c67832a1fe8b5b0e74e4c37576406e511037c48 | C/C++ | 3,623 | 168 | #ifndef PROTO_ALIGNMENT_H
#define PROTO_ALIGNMENT_H
#include <src/jaz/optimization/optimization.h>
#include <src/jaz/tomography/particle_set.h>
#include <src/jaz/image/buffered_image.h>
class CTF;
class ProtoAlignment : public DifferentiableOptimization
{
public:
ProtoAlignment(
const std::vector<BufferedI... |
0a295a25b9163814e0b2ecc0a25b9d1ddb4492482dbe5d496ca29853410c72e6 | C/C++ | 3,628 | 106 | // This file is part of Eigen, a lightweight C++ template library
// for linear algebra.
//
// Copyright (C) 2014 Pedro Gonnet (pedro.gonnet@gmail.com)
// Copyright (C) 2016 Gael Guennebaud <gael.guennebaud@inria.fr>
//
// This Source Code Form is subject to the terms of the Mozilla
// Public License v. 2.0. If a copy ... |
e37843c68112e571a81017cfce9a296e18b423ab8e0e052cafccdff2c3f89aa9 | C/C++ | 3,628 | 120 | #ifndef __LIBGRAVIS_T_QUATERNION_H__
#define __LIBGRAVIS_T_QUATERNION_H__
/******************************************************************************
** Title: tQuaternion.h
** Description: Represents a quaternion useful for rotation and scaling
**
** Author: Reinhard Knothe
** Bria... |
93ac2f9145c9902c1d5fa76f391f398cde31b9d62ad3b439dc14413dcb78830c | C/C++ | 3,634 | 140 | /***************************************************************************
*
* Author: "Jasenko Zivanov"
* MRC Laboratory of Molecular Biology
*
* This program is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foun... |
54cd0c7ad21ef27db6179402f647d4debb67cb7109ecdf79683e1cc38da04d58 | C/C++ | 3,635 | 111 | /*
This file implements some utility functions
Hongzhi Wang 07/19/2010
*/
#include "itkImage.h"
#include "itkImageFileReader.h"
#include "itkImageFileWriter.h"
#include "itkRescaleIntensityImageFilter.h"
#include "itkConstNeighborhoodIterator.h"
#include "itkImageRegionIterator.h"
#include "itkImageIterator.h"
#includ... |
f0fae2fde78741ce9beb0b857accfe18a6a902e46174e101c9265882b31fab5b | C/C++ | 3,664 | 133 | /***************************************************************************
*
* Author: "Jasenko Zivanov & Sjors H.W. Scheres"
* MRC Laboratory of Molecular Biology
*
* This program is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* t... |
79ee3f0307cc0b2250d70038ddb1cad814682785ca8f6d3ac7c17d1e96dbeff9 | C/C++ | 3,684 | 117 | #pragma once
#include <c10/metal/common.h>
template <unsigned N = c10::metal::max_ndim>
struct OrgqrParams {
int32_t num_batch_dims;
uint32_t m;
uint32_t m2;
uint32_t n;
uint32_t k;
::c10::metal::array<uint32_t, N> A_strides;
::c10::metal::array<uint32_t, N> tau_strides;
::c10::metal::array<uint32_t,... |
365f969cbae85827b61b4e8eac3072cb588499385b0766428529fa6ade275040 | C/C++ | 3,686 | 122 | /***************************************************************************
*
* Author: "Sjors H.W. Scheres"
* MRC Laboratory of Molecular Biology
*
* This program is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software F... |
d07f1ab542e2863d7b2dbdb40583a3199961995cd97ff9e05a46e5d470ffa177 | C/C++ | 3,688 | 147 | #pragma once
#include <c10/core/Allocator.h>
#include <string_view>
namespace at {
enum MappedAllocatorModes {
ALLOCATOR_MAPPED_SHARED = 1,
ALLOCATOR_MAPPED_SHAREDMEM = 2,
ALLOCATOR_MAPPED_EXCLUSIVE = 4,
ALLOCATOR_MAPPED_NOCREATE = 8,
ALLOCATOR_MAPPED_KEEPFD = 16,
ALLOCATOR_MAPPED_FROMFD = 32,
ALLOCATO... |
81e2f432daf8af052b28cbdcee4bfb1bd32faa2b2c563c942f72c5c6df9bba91 | C/C++ | 3,689 | 129 | /***************************************************************************
*
* Author: "Jasenko Zivanov"
* MRC Laboratory of Molecular Biology
*
* This program is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foun... |
66ea1181d7c7a8a00019e835722a76146e0d334a5a9ef5310c33a151c7171624 | C/C++ | 3,694 | 115 | /***************************************************************************
*
* Author: "Jasenko Zivanov"
* MRC Laboratory of Molecular Biology
*
* This program is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foun... |
c30d0e20c8cc02147878958b13f4abf6f0454c823a69a8a1e3fae63db334b50b | C/C++ | 3,698 | 104 | #pragma once
#include <ATen/native/TensorIterator.h>
#include <c10/util/irange.h>
namespace at::native {
inline bool is_constant_index(int ntensor, const int64_t* strides) {
AT_ASSERT(ntensor >= 3);
for (const auto arg : c10::irange(2, ntensor)) {
if (strides[arg] != 0) {
return false;
}
}
retur... |
e5b2f5e973d4af1a0a3909babcdeed60feb46d48803d36cb43db77762922c609 | C/C++ | 3,702 | 82 | #include <c10/macros/Macros.h>
C10_DIAGNOSTIC_PUSH_AND_IGNORED_IF_DEFINED("-Wdeprecated-declarations")
#import <Metal/Metal.h>
#import <MetalPerformanceShaders/MetalPerformanceShaders.h>
C10_DIAGNOSTIC_POP()
#include <string>
// This is a utility macro that can be used to throw an exception when a Metal
// API functi... |
5ec25e78294c8c70399d9280c938b1dac0b5e5528583609f2fe375624781193f | C/C++ | 3,715 | 128 | #pragma once
#include <ATen/core/Tensor.h>
#include <ATen/Dispatch.h>
#include <ATen/native/DispatchStub.h>
#include <ATen/native/quantized/AffineQuantizerBase.h>
namespace at::native {
TORCH_API Tensor& quantize_tensor_per_tensor_affine(
const Tensor& rtensor,
Tensor& qtensor,
double scale,
int64_t ... |
0004a59bad1278ae8b88063a4ed7a83bae9715a0cbfa44c19addbf8ed0775831 | C/C++ | 3,718 | 65 | #pragma once
namespace at {
// views and their in-place version ops
#define TORCH_VIEW_FNS(m) \
m.impl("as_strided_", torch::CppFunction::makeFallthrough()); \
m.impl("detach", torch::CppFunction::makeFallthrough()); \
m.impl("detach_", torch::CppFunction::makeFallthrough()); \
m.impl("diagonal", torch::CppFun... |
38386da0b783c1435c55a8006614e3d06a5038b57267dfb4838a9d7efe6595e3 | C/C++ | 3,736 | 128 | #pragma once
#include <vector>
#include <ATen/core/Tensor.h>
#include <ATen/native/ReduceOpsUtils.h>
#include <c10/util/irange.h>
namespace at::native {
namespace {
// checks whether index.dtype == int64
// and self.dtype == src.dtype if src is a Tensor
inline void scatter_gather_dtype_check(
const std::string& m... |
f7490670d6813e04f914902b07f30f816db8fcca65e5171f511dd8d2b441e41c | C/C++ | 3,746 | 112 | #ifndef NPY_DEPRECATED_INCLUDES
#error "Should never include npy_*_*_deprecated_api directly."
#endif
#ifndef NUMPY_CORE_INCLUDE_NUMPY_NPY_1_7_DEPRECATED_API_H_
#define NUMPY_CORE_INCLUDE_NUMPY_NPY_1_7_DEPRECATED_API_H_
/* Emit a warning if the user did not specifically request the old API */
#ifndef NPY_NO_DEPRECATE... |
df1e4aaea7d93926faec8b8a5f7e6469b9888c2e25ed42e2bef1a824e090784d | C/C++ | 3,758 | 86 | #pragma once
#include <ATen/core/Tensor.h>
#include <c10/macros/Export.h>
#include <c10/util/intrusive_ptr.h>
// A little explanation about why this file exists at all. We have
// a few methods on Tensor class which require access to reified access to
// AutogradMeta. In open source, this isn't a big deal: we just ... |
be9c18a6781072348934c6b6429572f251a500046ef53ef62c801234ae98024b | C/C++ | 3,762 | 93 | #pragma once
#include <cstdint>
#include <c10/core/ScalarType.h>
#include <ATen/cuda/CUDAConfig.h>
// NOTE: These templates are intentionally not defined in this header,
// which avoids re-compiling them for each translation unit. If you get
// a link error, you need to add an explicit instantiation for your
// types ... |
085474b30615754d126f12e012ff395a7a635d5cacdad6057c19358928550aa8 | C/C++ | 3,767 | 69 |
#include <cstdint>
#include <ATen/native/TensorIterator.h>
#include <ATen/native/cuda/MemoryAccess.cuh>
namespace at::native {
struct ScatterAddOp;
struct ScatterMinOp;
struct ScatterMaxOp;
template<int alignment>
inline bool fast_gather_kernel_eligible(const TensorIterator& iter, char * const out_ptr, char * const... |
270992921f1d2a6fc8d99c23947aff4908d0df0dc8c37ed16d6ce3ec3a9f3e4c | C/C++ | 3,770 | 113 | //----------------------------------------------------------------------------------
// streams.h
// Downloaded from http://www.intantech.com/files/CLAMP_source_code_v1_0.zip
// as of 2017-03-13
//
// Copyright information added according to license directory in the original
// source code package:
//
// Intan ... |
b1d9f4beb3560b5c2e375ff0e835d4406812ab66a9bf604a77073395d225164c | C/C++ | 3,802 | 89 | /*
This file exists so that we use the same weight layout for MoE grouped gemm and regular gemm when the weight is
quantized. The preprocessing code reads this template to know how to organize the quantized weight matrices
to be consumed by CUTLASS.
Note that for int4, ThreadBlockK MUST be 64.
*/
#pragma on... |
f92f87ac867bf12f6c988db4021619fdc50dbda8a17d3c9f67a6daebac4de7bf | C/C++ | 3,818 | 85 | #pragma once
#include <ATen/hip/HIPConfig.h>
#include <c10/hip/HIPGuard.h>
#include <ATen/hip/impl/HIPCachingAllocatorMasqueradingAsCUDA.h>
#include <ATen/hip/impl/HIPStreamMasqueradingAsCUDA.h>
// Use of c10::hip namespace here makes hipification easier, because
// I don't have to also fix namespaces. Sorry!
namesp... |
b58b963340b79559c63860cdba6af2e9b55c6c53f54595eaea160d644c450c4e | C/C++ | 3,836 | 95 | #ifndef RELION_TOMO_PARTICLE_SET_H
#define RELION_TOMO_PARTICLE_SET_H
#include <src/metadata_table.h>
#include <src/jaz/gravis/t2Vector.h>
#include <src/jaz/gravis/t3Matrix.h>
#include <src/jaz/gravis/t4Matrix.h>
#include "motion/trajectory.h"
#include "motion/trajectory_set.h"
class TomogramSet;
class ParticleIndex... |
77df870eb7aca3f36ae3b7be3e26a8a80bce74b5f29cc8d2124b4276ef2d8f9a | C/C++ | 3,845 | 144 | // This program is free software; you can redistribute it and/or
// modify it under the terms of the GNU General Public License
// as published by the Free Software Foundation; either version 2
// of the License, or (at your option) any later version.
// This program is distributed in the hope that it will be useful,
... |
a5ccd1144c9dc48bd8aa4168f5befdd7726effcf2929d622d3e5ce5a988d0706 | C/C++ | 3,851 | 117 | // This program is free software; you can redistribute it and/or
// modify it under the terms of the GNU General Public License
// as published by the Free Software Foundation; either version 2
// of the License, or (at your option) any later version.
// This program is distributed in the hope that it will be use... |
bcb30016366811869c4c97869a3bc022b8b835967a173b15b570e4a92bf5ba75 | C/C++ | 3,864 | 88 | // Copyright © 2023 Apple Inc.
#pragma once
#include <ATen/core/ATen_fwd.h>
#include <c10/core/Allocator.h>
#include <c10/core/CachingDeviceAllocator.h>
#include <c10/core/Storage.h>
#include <c10/util/Registry.h>
#define MB(x) (x * 1048576UL)
namespace at::mps {
// this is a public interface to access MPSAllocat... |
325c92439b0018442b8e36bf85548478c4ac82443f705905bcbb2f613fee1636 | C/C++ | 3,865 | 122 | #ifndef INKUBE_PACKAGE_H
#define INKUBE_PACKAGE_H
#include <array>
#include <cstdint>
#include <vector>
#include <cstring> // For memset
#include <iostream>
#include "fpga_constants.h"
#define CHUNKED_CHANNELS 60
#define NUM_CHANNEL_CHUNKS 4
#define PKG_SEND_OUT 4// 17
#define SEND_ENV 10
#define RAW_SOCKET_BASE_... |
b0ffef6866f74de3a32d7103bb4a6a470785507fcda34cf89248666215d20f62 | C/C++ | 3,872 | 135 | /******************************************************************************
** Title:
** Description:
******************************************************************************/
#ifndef _OBJWriter_H_
#define _OBJWriter_H_
#include <string>
#include <map>
#include "../../Mesh.h"
#include "../../tMesh.h... |
03a71a1524c8defaba0d1054e07a982a4495599b2c2fd59ee4c9fcdfa3b3ca7d | C/C++ | 3,873 | 129 | // Copyright © 2022 Apple Inc.
#pragma once
#include <ATen/detail/AcceleratorHooksInterface.h>
#include <c10/core/Allocator.h>
#include <c10/util/Exception.h>
#include <c10/util/Registry.h>
#include <cstddef>
namespace at {
struct TORCH_API MPSHooksInterface : AcceleratorHooksInterface {
// this fails the impl... |
7bd055342bcd5aec031e6b1ffec2e6282f212e89ba46b065a6daf0b7745398d4 | C/C++ | 3,875 | 162 | /***************************************************************************
*
* Author: "Jasenko Zivanov"
* MRC Laboratory of Molecular Biology
*
* This program is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foun... |
0821d818c88a8886362d1ef15651d8ac8ced04316b2b2d13d2461757529dd174 | C/C++ | 3,879 | 139 | #pragma once
#include <c10/core/Backend.h>
#include <c10/core/ScalarType.h>
#include <c10/core/Layout.h>
#include <c10/core/TensorOptions.h>
#include <c10/core/Storage.h>
#include <ATen/core/DeprecatedTypePropertiesRegistry.h>
#include <ATen/core/Generator.h>
namespace at {
class Tensor;
// This class specifies a ... |
90c2ea6b6a4aec7fdf4eaa5b0fd9e90b2467e7babc6b4586ffbdb9be8888f7ca | C/C++ | 3,900 | 126 | // This program is free software; you can redistribute it and/or
// modify it under the terms of the GNU General Public License
// as published by the Free Software Foundation; either version 2
// of the License, or (at your option) any later version.
// This program is distributed in the hope that it will be use... |
ba81cbc94513fc2592704a26d74c0e04030c315afa10a2a74cd631d05cde8e7c | C/C++ | 3,921 | 145 | #ifndef POINT_INSERTION_H
#define POINT_INSERTION_H
#include <src/jaz/gravis/t3Vector.h>
#include <src/complex.h>
#include <src/jaz/image/raw_image.h>
#include <src/jaz/optics/dual_contrast/dual_contrast_voxel.h>
template <typename SrcType, typename DestType>
class ClippedPointInsertion
{
public:
inline void i... |
f4c67085c123752bc40927e9dddad9d1a5cd8f2f62e79aae1b451c9384c8369f | C/C++ | 3,928 | 128 | #pragma once
#include <ATen/DimVector.h>
#include <c10/core/ScalarType.h>
#include <c10/core/SymIntArrayRef.h>
#include <c10/util/DimVector.h>
#include <c10/util/Exception.h>
#include <optional>
#include <sstream>
#include <vector>
namespace at {
// Infers the size of a dim with size -1, if it exists. Also checks th... |
dbdc0842274ae43d5753db3bac8d9795461235af992d30fdc838a25d598d67a1 | C/C++ | 3,943 | 191 | /* Autogenerated v4-0-0 from https://github.com/scottprahl/iad */
#define FIND_A 0
#define FIND_B 1
#define FIND_AB 2
#define FIND_AG 3
#define FIND_AUTO 4
#define FIND_BG 5
#define FIND_BaG 6
#define FIND_BsG 7
#define FIND_Ba 8
#define FIND_Bs 9
#define FIND_G 10
#define FIND_B_WITH_NO_ABSORPTION 11
#define FIND_B_W... |
788e7a2b45028f9880c5ebcf9bd80c5ae8b6eb148c449270fee3304ecb45a5b7 | C/C++ | 3,951 | 146 | /******************************************************************************
** Title: gravis/io/mesh/obj.h
** Description: Implements reader/writer for different mesh file formats.
**
** Author: Brian Amberg
** Computer Science Department, University Basel (CH)
**
***********************... |
b3900d43fa8062b9f1a7153308500407a9020a31fa3836f7df83a704fd62ec3d | C/C++ | 3,954 | 87 | /***************************************************************************
*
* Author: "Jasenko Zivanov"
* MRC Laboratory of Molecular Biology
*
* This program is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foun... |
de072cfe7bbc717ac64eede44ce6e87d88856c458176ed0fc3d9fabad2b86c16 | C/C++ | 3,961 | 134 | #ifndef DYN_EULER_ANGLES_H
#define DYN_EULER_ANGLES_H
#include <stdexcept>
#include <limits>
#include <src/jaz/gravis/t4Matrix.h>
class EulerDynamo
{
public:
inline static gravis::d4Matrix anglesToMatrix4(double phi, double theta, double chi);
inline static gravis::d3Matrix anglesToMatrix3(double phi, double t... |
5881b3af1ac4bca42cfd6ba1114186414c3d4fe06ed1329f6630dc893a958e7e | C/C++ | 3,975 | 117 | /*
* Copyright (C) 1992-1994,1997,2003,2013 Bernd Feige
* This file is part of avg_q and released under the GPL v3 (see avg_q/COPYING).
*/
/*
* mfx_file.h definitions for implementation and use of mfx_file.c
* Bernd Feige 23.11.1992
*/
#ifndef MFX_FILE_H
#define MFX_FILE_H
#include <stdio.h>
#include <stdint.h>... |
1cc13d8f2cc1817d49119b5a4b6d8b76ad80c35102d2fe674179cd180ef177b3 | C/C++ | 3,990 | 86 | #pragma once
#include <ATen/Context.h>
#include <ATen/core/Tensor.h>
#include <ATen/cuda/CUDAContext.h>
#include <c10/cuda/CUDACachingAllocator.h>
#include <ATen/native/TransposeType.h>
#include <ATen/native/cuda/MiscUtils.h>
#define USE_LINALG_SOLVER
// From cuSOLVER doc: Jacobi method has quadratic convergence, s... |
2cc812581cf44ba188a95cb2ee204257bc26d1dc0f37118fb9f354a018257a07 | C/C++ | 3,991 | 149 | #pragma once
#include <c10/util/FunctionRef.h>
#include <fbjni/fbjni.h>
#include <torch/csrc/api/include/torch/types.h>
#include "caffe2/serialize/read_adapter_interface.h"
#include "cmake_macros.h"
#ifdef __ANDROID__
#include <android/log.h>
#define ALOGI(...) \
__android_log_print(ANDROID_LOG_INFO, "pytorch-jni"... |
4761b3c940d9498acae29677aabb6f16feca6e38cfc6241243a4db470ce373b3 | C/C++ | 3,993 | 125 | /*
* This file is part of Healpix_cxx.
*
* Healpix_cxx is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation; either version 2 of the License, or
* (at your option) any later version.
*
* Healpix_cxx is... |
11e02a1d9d6aacb3ac5ffda8a9528a8a9f7af82fb5d8da4cb3200d9d8d472181 | C/C++ | 4,024 | 115 | #ifndef __LIBGRAVIS_NMESH_H__
#define __LIBGRAVIS_NMESH_H__
/******************************************************************************
** Title: NMesh.h
** Description: N-Sided Mesh representation.
**
** Author: Jean-Sebastien Pierrard, 2005
** Brian Amberg
** Computer Sci... |
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