sha256 stringlengths 64 64 | language stringclasses 27
values | size int32 1 491k | lines int32 1 21.8k | content stringlengths 1 200k |
|---|---|---|---|---|
04957fa83781609d7863c23f1c2a73ca4b81e6af576b15d5f0921accc5469769 | C/C++ | 2,489 | 94 | /*
* Copyright (c) Facebook, Inc. and its affiliates.
* All rights reserved.
*
* This source code is licensed under the BSD-style license found in the
* LICENSE file in the root directory of this source tree.
*/
#pragma once
#if defined(__GNUC__)
#if defined(__clang__) || (__GNUC__ > 4 || __GNUC__ == 4 && __GNU... |
f81deb5f0ecb82e7842b2a9ff7a8c60c2729c74f5fd50d89ac15b699629e55c2 | C/C++ | 2,490 | 76 | //***********************************************************************************************
//
// Copyright (c) 1993-1999 Axon Instruments.
// All rights reserved.
// Permission is granted to freely to use, modify and copy the code in this file.
//
//************************************************... |
8e3f9eadb9b29fff95b75dabade02e4695c6d6243e53aab02d2b32d9cf50f4c7 | C/C++ | 2,491 | 51 | #pragma once
#include <ATen/core/Tensor.h>
#include <c10/core/Scalar.h>
#ifndef AT_PER_OPERATOR_HEADERS
#include <ATen/Functions.h>
#else
#include <ATen/ops/empty_like.h>
#endif
namespace at {
#define AT_FORALL_BINARY_OPS(_) \
_(+, x.add(y), y.add(x)) ... |
c403400e3c6066b1c698829490561557808037523a8d4f5cc8b4019b2128bee6 | C/C++ | 2,492 | 106 | /*
* Copyright (c) Facebook, Inc. and its affiliates.
* All rights reserved.
*
* This source code is licensed under the BSD-style license found in the
* LICENSE file in the root directory of this source tree.
*/
#pragma once
#include <cstddef>
#include <limits>
#include <stdlib.h>
template <typename T, size_t... |
53c5acefcf990777a19ea7093afab89b84adad7d6de449e12f7106e272fbd750 | C/C++ | 2,506 | 59 | // Created 2/6/01 Steve Franks
// avoid duplicate definitions
#ifndef _NLX_OBJNAME_H
#define _NLX_OBJNAME_H
// Class Names so all can use them
#define NLX_DummyClassName "Dummy"
#define NLX_DCDCB_AcqClassName "DCDCB_Acq"
#define NLX_Demo_AcqClassName "Demo_Acq"
#define NLX_Demo_LicClassName ... |
7ea78c2a09d419c14395c2c6bdaeb8ae97775e7174442303aa2a1ad2f8182ebd | C/C++ | 2,514 | 102 | #ifndef PREDICTION_H
#define PREDICTION_H
#include <src/jaz/image/buffered_image.h>
#include <src/jaz/gravis/t4Matrix.h>
#include <src/jaz/optics/aberrations_cache.h>
#include <src/jaz/tomography/particle_set.h>
#include "reference_map.h"
class CTF;
class Tomogram;
class Prediction
{
public:
enum HalfSet
{... |
d91567b669d4858ffe48513368e52da85c2db57eae2cfe636beaab078892dfd4 | C/C++ | 2,531 | 87 | // This program is free software; you can redistribute it and/or
// modify it under the terms of the GNU General Public License
// as published by the Free Software Foundation; either version 2
// of the License, or (at your option) any later version.
// This program is distributed in the hope that it will be use... |
93353faef3fac316e2198b1163a932283b980fa799c405c75bfbe0b4d92ca3b2 | C/C++ | 2,540 | 100 | // For the SYCL version, this is essentially a mix of
// cuda_ml_optimiser.h and cpu_ml_optimiser.h.
// Note the the SYCL implementation defines the floating point precision used
// for XFLOAT using ACC_DOUBLE_PRECISION (ACC_DOUBLE_PRECISION is also used
// for the equivalent purpose throughout the code)
#ifndef SYCL_M... |
22c2e3196efd5ecb786aa35a90937ba359794b89a028a68fbe4e5891cd56d349 | C/C++ | 2,543 | 92 | /*
* Copyright (C) 2022 Bernd Feige
* This file is part of avg_q and released under the GPL v3 (see avg_q/COPYING).
*/
/*
* Header for Nihon Kohden 2110/1100 formats
*/
#ifndef _NKFORMAT_H_INCLUDED
#define NKE_DESCRIPTION_LENGTH 20
#define NKE_TIMESTAMP_LENGTH 25
struct nke_file_header {
char signature1[16];
cha... |
33b6cbe9287cffa1b157865d1c60b525475779032242aaff14f651d125d4f3af | C/C++ | 2,547 | 81 | /*===================================================================
Program: ASHS (Automatic Segmentation of Hippocampal Subfields)
Module: $Id$
Language: C++ program
Copyright (c) 2012 Paul A. Yushkevich, University of Pennsylvania
This file is part of ASHS
ASHS is free software: you can redis... |
302f5d3aac0ddff7cd8d0decaf987c61b490eaeda1d5686fecc7a044b9362060 | C/C++ | 2,559 | 78 | #import <ATen/Tensor.h>
#import <ATen/native/metal/MetalCommandBuffer.h>
#import <ATen/native/metal/MetalTensorImpl.h>
#import <ATen/native/metal/MetalTensorUtils.h>
C10_DIAGNOSTIC_PUSH_AND_IGNORED_IF_DEFINED("-Wdeprecated-declarations")
#import <MetalPerformanceShaders/MetalPerformanceShaders.h>
C10_DIAGNOSTIC_POP()
... |
61c15b1f58fe964c537301ebe6daecc25dd6244653a7c55c5bab1fb26d75fe80 | C/C++ | 2,560 | 94 | #include <c10/util/Exception.h>
#include <utility>
namespace at {
/*
[collapse dims] Updates sizes, and strides to reflect a "collapse" of
the info, possibly excluding the optional excludeDim. A "collapsed" version
of the info is the fewest dims that order the tensor's elements in the same
way as the original info. I... |
28e3375a190f628038ab2f3af327f85b3b22c37cb418328847fc800790892e0a | C/C++ | 2,562 | 61 | #pragma once
#include <torch/headeronly/core/TensorAccessor.h>
#include <c10/macros/Macros.h>
#include <c10/util/ArrayRef.h>
#include <c10/util/Deprecated.h>
#include <c10/util/Exception.h>
#include <c10/util/irange.h>
#include <cstddef>
#include <cstdint>
#include <type_traits>
namespace at {
using torch::headeronl... |
7cc0c25a108540b0e1e91ad0f7e250590041760b97e4c626ca3dc12a71f60859 | C/C++ | 2,565 | 59 | // Created 2/6/01 Steve Franks
// avoid duplicate definitions
#ifndef _NLX_OBJNAME_H
#define _NLX_OBJNAME_H
// Class Names so all can use them
#define NLX_DummyClassName "Dummy"
#define NLX_DCDCB_AcqClassName "DCDCB_Acq"
#define NLX_Demo_AcqClassName "Demo_Acq"
#define NLX_Demo_LicC... |
6f148e11ebee36c8cdc61dacf900a6c0cefdd143864b5f8dc271ff47e3e81bb5 | C/C++ | 2,567 | 96 | /*
* This file is part of Healpix_cxx.
*
* Healpix_cxx is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation; either version 2 of the License, or
* (at your option) any later version.
*
* Healpix_cxx is... |
18649309d7d18d90a75138512d7af8b4b32d2d4f3bbfabc2c4b5c182390324d3 | C/C++ | 2,570 | 82 | // This program is free software; you can redistribute it and/or
// modify it under the terms of the GNU General Public License
// as published by the Free Software Foundation; either version 2
// of the License, or (at your option) any later version.
// This program is distributed in the hope that it will be use... |
d5bd42f56058b4cc66f02b2c2e539e402d12c4e00f44c1d01bfeb8e6b7ba4970 | C/C++ | 2,575 | 61 | /***************************************************************************************************
* Copyright (c) 2017 - 2022 NVIDIA CORPORATION & AFFILIATES. All rights reserved.
* SPDX-License-Identifier: BSD-3-Clause
*
* Redistribution and use in source and binary forms, with or without
* modification, are p... |
99217bcbc46ceea935556750ec80bdab19457ccb8b424eab4a7b97b5356f189d | C/C++ | 2,579 | 64 | /***************************************************************************
*
* Author: "Jasenko Zivanov"
* MRC Laboratory of Molecular Biology
*
* This program is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foun... |
020b804194f3c4d04e1ddec7bd453ada99f54df5c2b4bbcab4b9b65ce6a774da | C/C++ | 2,580 | 99 | /*
* Copyright (c) Facebook, Inc. and its affiliates.
* All rights reserved.
*
* This source code is licensed under the BSD-style license found in the
* LICENSE file in the root directory of this source tree.
*/
#pragma once
#include <algorithm>
#include <cassert>
#include <cstddef>
#include <cstdlib>
#include ... |
98a420fcd11eccead4f66eb819c0636dba1d5e37a7e83d0267f72770644468e3 | C/C++ | 2,581 | 87 | #ifndef SYCL_SETTINGS_H_
#define SYCL_SETTINGS_H_
#include "src/acc/settings.h"
// TODO: Need to optimized for specific SYCL device
// GENERAL -----------------------------
#define MAX_RESOL_SHARED_MEM 32
#define BLOCK_SIZE 128
// -------------------------------------
// COARSE DIFF -------------------------... |
ce4ff75add8e93cec6b3d6e5d63b187a649c6bf5b9428ac50a0c6a795ec54331 | C/C++ | 2,584 | 124 | #ifndef LOCAL_EXTREMA_H
#define LOCAL_EXTREMA_H
#include "raw_image.h"
#include "buffered_image.h"
class LocalExtrema
{
public:
template <typename T>
static BufferedImage<T> boxMaxima(const RawImage<T>& img, int dist);
template <typename T>
static BufferedImage<T> boxMinima(const RawImage<T>& img, int ... |
019e446443e923807fe8b9c593c6946c578f4a7212152e31cd4f7cfe5a866975 | C/C++ | 2,598 | 55 | #pragma once
#include <c10/hip/HIPCachingAllocator.h>
#include <c10/macros/Macros.h>
#include <ATen/hip/impl/HIPStreamMasqueradingAsCUDA.h>
namespace c10 {
// forward declaration
class DataPtr;
namespace hip {
namespace HIPCachingAllocatorMasqueradingAsCUDA {
TORCH_CUDA_CPP_API c10::cuda::CUDACachingAllocator::CUDAA... |
1129b2e3cf4e849ee7296cc2d080ac886ad0ec4041b1ff1da152c04725d77b87 | C/C++ | 2,602 | 114 | #ifndef DYN_TAIT_BRYAN_ANGLES_H
#define DYN_TAIT_BRYAN_ANGLES_H
#include <src/jaz/gravis/t4Matrix.h>
#include <src/error.h>
class TaitBryan
{
public:
inline static gravis::d4Matrix anglesToMatrix4(double phi, double theta, double chi);
inline static gravis::d3Matrix anglesToMatrix3(double phi, double theta, ... |
560d1c32a3e8bb4b9898e7b77ac21cd06addfed5d2e628d064a94849d677e97e | C/C++ | 2,608 | 147 | #ifndef RADIAL_AVG_H
#define RADIAL_AVG_H
#include <vector>
#include <src/image.h>
class RadialAvg
{
public:
template<typename T>
static std::vector<std::pair<T,T>> radialAverageAndStdDevFFTW_2D(const Image<T>& map)
{
const int w = map.data.xdim;
const int h = map.data.ydim;
const int b = w;
... |
031129f0b3fec85bcbcc023b62eb06f18e1f65b87b1a5f8a2cece14f942a421c | C/C++ | 2,641 | 77 | // This program is free software; you can redistribute it and/or
// modify it under the terms of the GNU General Public License
// as published by the Free Software Foundation; either version 2
// of the License, or (at your option) any later version.
// This program is distributed in the hope that it will be use... |
1815c4fc2d300e41893aba83b4a620e1747331da6ac353d4e0fd62cc5869b87d | C/C++ | 2,644 | 84 | #ifndef DIFF2_KERNELS_H_
#define DIFF2_KERNELS_H_
#include "src/acc/sycl/sycl_virtual_dev.h"
class AccProjectorKernel;
namespace syclKernels
{
template<bool REF3D, bool DATA3D, int block_sz, int eulers_per_block, int prefetch_fraction>
#ifdef __INTEL_COMPILER
inline
#else
__attribute__((always_inline)) inline
#en... |
f99318d77055c661359088972eb5c610522fadb2b941ffc7984482a087daab2d | C/C++ | 2,645 | 102 | #ifndef _xplot_h
#define _xplot_h
#include <stdarg.h>
#include <stdio.h>
#include <stdlib.h> /* Added 10-2012 */
#include <Xlib.h>
#include <Xutil.h>
#include <Xos.h>
#include <Xatom.h>
/*
#include "/usr/include/X11/Xlib.h"
#include "/usr/include/X11/Xutil.h"
#include "/usr/include/X11/Xos.h"
#include "/usr/include/... |
c768d639cc094d78822e19a08afd8d2a5f649e9dfda3b494582edc9b6757dc5f | C/C++ | 2,647 | 107 | // For the Alternate CPU version, this is essentially a copy of
// cuda_ml_optimiser.h. What is different is that device bundles are not
// needed, both as a separate class and referenced in MlOptimiserCpu,
// which has a few different data members and methods from MlOptimiserCuda to
// support the different implement... |
9495b56b492cda758df9af288a432064728779c5b272b8496fb6057a4b1426b2 | C/C++ | 2,652 | 93 | #pragma once
#include <c10/core/Device.h>
#include <c10/util/Exception.h>
#include <c10/util/Registry.h>
#include <ATen/detail/AcceleratorHooksInterface.h>
namespace at {
namespace xpu {
// Forward-declares at::xpu::LevelZero
struct LevelZero;
} // namespace xpu
struct TORCH_API XPUHooksInterface : AcceleratorHo... |
2c143cff1d0b1be269ef44a1d2d435396cbf7ad136b318c011b9a668cc838236 | C/C++ | 2,663 | 56 | /* FILE config.h */
/* User configurable constants: map #define CAPS to CAPS() */
/* SPECIAL_FIGURE no longer used -- slot can be reused for another variable! */
#define SHOW_ANALOG function_SHOW_ANALOG()
#define SINGLE_ANALOG function_SINGLE_ANALOG()
#define FAST_FIGURE function_FAST_FIGURE()
#define SEM... |
5b2da92766bc9f40a80ed655116460b429223e68f1ffee1da5128f7ad9bbdcc9 | C/C++ | 2,671 | 108 | /*
* Copyright (c) Facebook, Inc. and its affiliates.
* All rights reserved.
*
* This source code is licensed under the BSD-style license found in the
* LICENSE file in the root directory of this source tree.
*/
#pragma once
#include <cstddef>
#include <cstdlib>
#include <algorithm>
#include <cfloat>
#include ... |
8b7ae587d5e6626d839e50e6bdbaaf7778f29bab25a57b9866ccec713ec6ce15 | C/C++ | 2,672 | 88 | #pragma once
#include <ATen/NumericUtils.h>
#include <ATen/native/Resize.h>
#include <c10/util/irange.h>
#ifndef AT_PER_OPERATOR_HEADERS
#include <ATen/Functions.h>
#else
#include <ATen/ops/empty.h>
#endif
namespace at::native {
// ensure we get good values and indices for kthvalue, mode
// this will always be with... |
e7b50f9b9ca972b648aaca7aee84727af22641477d99e686ae621ff0fef3b96b | C/C++ | 2,687 | 84 | #pragma once
#include <c10/core/ScalarType.h>
#include <c10/core/QScheme.h>
#include <c10/util/intrusive_ptr.h>
namespace at {
class Tensor;
struct QTensorImpl;
struct Quantizer;
using ConstQuantizerPtr = const c10::intrusive_ptr<Quantizer>&;
using QuantizerPtr = c10::intrusive_ptr<Quantizer>;
/**
* Quantizer is t... |
c1ed2929096de7fffade5a07625cffd637481aa5b5c420b58157ed1facff63ef | C/C++ | 2,688 | 110 | #ifndef FILAMENT_FIT_H
#define FILAMENT_FIT_H
#include <src/jaz/gravis/t3Vector.h>
#include <src/jaz/gravis/t4Matrix.h>
#include <src/jaz/optimization/optimization.h>
#include <map>
#include <src/jaz/math/spline.h>
#include <src/jaz/image/buffered_image.h>
#include "filament_model.h"
#include "filament_mapping.h"
#... |
19c05a3e015f8f9b2f9110b5be89ce1ba5bb1adbbeaa848874d3f572899710a2 | C/C++ | 2,718 | 95 | /***************************************************************************
*
* Author: "Jasenko Zivanov & Sjors H.W. Scheres"
* MRC Laboratory of Molecular Biology
*
* This program is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* t... |
3cfaa529bd9bd90e9ad9915c47b0101f0acd72a4ff1e384b1137d607f0a93327 | C/C++ | 2,718 | 79 | #pragma once
#include <ATen/core/ATen_fwd.h>
#include <ATen/NestedTensorImpl.h>
#include <c10/macros/Macros.h>
namespace at::native {
TORCH_API Tensor NestedTensor_to_padded_tensor_generic(
const Tensor& t,
double padding,
OptionalIntArrayRef output_size);
template <typename Func>
Tensor map_nt(const Te... |
57e65a15a8e13cca6efb893c87a1d68df808728b1001945622c5453719a4366c | C/C++ | 2,741 | 73 | #pragma once
#include <cstdint>
#include <ATen/core/ivalue.h>
#include <c10/util/Exception.h>
namespace ao::sparse {
// <Weight, bias, out_features_block_size, in_features_block_size>
using LinearPackedSerializationType =
std::tuple<at::Tensor, std::optional<at::Tensor>, std::vector<int64_t>>;
#define SPARSE_L... |
91e77f444ef51ff17c12d3393e6ddc727aa1ebaab4fd314a66d22a606382efe7 | C/C++ | 2,755 | 88 | //----------------------------------------------------------------------------------
// common.h
// Downloaded from http://www.intantech.com/files/CLAMP_source_code_v1_0.zip
// as of 2017-03-13
//
// Original comment and license information:
// Intan Technologies
// Common Header File
// Version 2.0 (25 August ... |
571203ae52d4c7a7f90d66af009662d5da2a4872881cf44a261a8b288f54e8cb | C/C++ | 2,763 | 103 | #ifndef DIFF_CTF_OPTIMISATION
#define DIFF_CTF_OPTIMISATION
#include <src/jaz/optimization/optimization.h>
#include <src/image.h>
#include <src/jaz/gravis/t2Matrix.h>
#include <src/jaz/single_particle/obs_model.h>
#include <vector>
class ModularCtfOptimisation : public DifferentiableOptimization
{
public:
typed... |
779d3cd6afdf3028d5872e1bc46895cc4f13887c404209252fb2a033e75df53a | C/C++ | 2,768 | 65 | /***************************************************************************
*
* Author: "Sjors H.W. Scheres"
* MRC Laboratory of Molecular Biology
*
* This program is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software F... |
69059775e6d640c321deaeedf20d088e976595087bd608299334ca25a461eb02 | C/C++ | 2,770 | 66 | /***************************************************************************
*
* Author: "Jasenko Zivanov"
* MRC Laboratory of Molecular Biology
*
* This program is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foun... |
b28e7e8755f6e2d56621e5ab3fed0f90b2923b1c4f5af2c928fd48befdf39c1a | C/C++ | 2,773 | 109 | #pragma once
#include <ATen/Config.h>
#include <ATen/core/Tensor.h>
#include <ATen/ops/empty.h>
#include <torch/library.h>
#if AT_KLEIDIAI_ENABLED()
namespace at::native::kleidiai {
template <typename T>
void kai_pack_rhs_groupwise_int4(
T& kernel,
const Tensor& weight_packed,
const Tensor& weight,
co... |
b4a0cb0ff34dc789d3708f70ee3090701471f38b444b28ff0b2067200e690e78 | C/C++ | 2,778 | 76 | /***************************************************************************
*
* Author: "Jasenko Zivanov"
* MRC Laboratory of Molecular Biology
*
* This program is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foun... |
ba1e9167a3c23239b91f1d53b982c621c38bf1352dd1e9a149a85e3886a6c42c | C/C++ | 2,778 | 68 | // This program is free software; you can redistribute it and/or
// modify it under the terms of the GNU General Public License
// as published by the Free Software Foundation; either version 2
// of the License, or (at your option) any later version.
// This program is distributed in the hope that it will be use... |
13a122e05c5ada6c46656b27e17c4319e5a360e47493563499796a67a0e1c669 | C/C++ | 2,793 | 95 | #pragma once
#include <ATen/Config.h>
#include <c10/core/Device.h>
#include <c10/util/flat_hash_map.h>
#include <c10/xpu/XPUFunctions.h>
#include <c10/xpu/XPUStream.h>
#include <oneapi/dnnl/dnnl.hpp>
#include <oneapi/dnnl/dnnl_sycl.hpp>
#include <vector>
namespace at::native::onednn {
dnnl::memory make_onednn_memo... |
5574c6007151c46f48b149c80fcbc4036800afa011989887807e18668f8e9a37 | C/C++ | 2,796 | 104 | #pragma once
#include <torch/headeronly/util/NumericUtils.h>
// complex_math.h declares ::exp/log/log1p/tan for c10::complex at global
// scope. The templates below call ::exp(x) etc., which as a qualified name is
// bound at definition, so those overloads must be visible here for
// at::exp(c10::complex<T>) to work.... |
caef4a0731d6302bf6c881aa7bde770ae5b81212a73cd8c6bb26fea65801b7ec | C/C++ | 2,810 | 91 | #pragma once
#include <ATen/Config.h>
#include <ATen/Tensor.h>
#include <ATen/core/List.h>
namespace at::native::xpu {
class QLinearOnednnXPU final {
public:
C10_API static Tensor q_linear_pointwise(
Tensor act,
double act_scale,
int64_t act_zero_point,
Tensor weight,
Tensor weight_s... |
1dc2e530aee7199f6af1d4ffceb865a9096932b3662156ad1404b24214172540 | C/C++ | 2,833 | 57 | //******************************************************************************************************************************************************
// GeneralOperations.h
// Author: Kevin Iamiceli
// Modified March 9, 2003
// Version 3.00
//**************************************************************************... |
bef2bb6653add2f82a4d5ac8caf896ce8c50cfbd12f81bdf952e19fe4e97e571 | C/C++ | 2,834 | 78 | #ifndef NUMPY_CORE_INCLUDE_NUMPY_NPY_ENDIAN_H_
#define NUMPY_CORE_INCLUDE_NUMPY_NPY_ENDIAN_H_
/*
* NPY_BYTE_ORDER is set to the same value as BYTE_ORDER set by glibc in
* endian.h
*/
#if defined(NPY_HAVE_ENDIAN_H) || defined(NPY_HAVE_SYS_ENDIAN_H)
/* Use endian.h if available */
#if defined(NPY_HAVE_ENDIA... |
825e3ce857885bbd78b291a29e0b627fc49b86134ccaceca951196774e185b5d | C/C++ | 2,838 | 103 | /**
* Transformer-specific NestedTensor utility functions.
*
* Not co-located with NestedTensor core code yet because they only
* support specific cases needed in transformers.
*/
#pragma once
#include <vector>
#include <c10/macros/Macros.h>
#include <optional>
namespace c10 {
class Scalar;
} // namespace c10
... |
7794733e85e4877871c5b386ef776625b474743f82aa21ce51528daf36d91d51 | C/C++ | 2,839 | 46 | // dear imgui: Platform Backend for SDL2
// This needs to be used along with a Renderer (e.g. DirectX11, OpenGL3, Vulkan..)
// (Info: SDL2 is a cross-platform general purpose library for handling windows, inputs, graphics context creation, etc.)
// Implemented features:
// [X] Platform: Clipboard support.
// [X] Pla... |
7b59463bd57dfd60d11dfa9ea1cb0f53aa5534b8b935708c5a6906a76d76a53d | C/C++ | 2,845 | 70 | /***************************************************************************
*
* Author: "Jasenko Zivanov"
* MRC Laboratory of Molecular Biology
*
* This program is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foun... |
6e2832fa21a6113cc3efc6a11088405a9aba0faebb9eaf33599398ede58c7d6b | C/C++ | 2,854 | 63 | // Copyright (c) Facebook, Inc. and its affiliates.
// All rights reserved.
//
// This source code is licensed under the BSD-style license found in the
// LICENSE file in the root directory of this source tree.
#pragma once
#include <ATen/Tensor.h>
#include <ATen/functorch/BatchedTensorImpl.h>
#include <ATen/functorch/... |
6c3200a720556fc1c01d579f20f1d2a23fa9a9ba68b8d64a8343a2b3c49797eb | C/C++ | 2,866 | 74 | #pragma once
// On Windows, math.h needs to be included with _USE_MATH_DEFINES defined to
// access constants such as M_SQRT2 and M_2_SQRTPI.
#ifdef _WIN32
#define _USE_MATH_DEFINES
#include <cmath>
#endif // _WIN32
#include <ATen/cpu/vec/vec.h>
#include <c10/util/BFloat16.h> // For c10::is_reduced_floating_point_v.
... |
1c9c9c2937080fd14a74c562834898d54813141c27de324b4808114a3278cc2f | C/C++ | 2,876 | 26 | #pragma once
#include <ATen/core/Tensor.h>
#include <c10/util/irange.h>
#include <ATen/core/IListRef.h>
namespace at::native {
// This file contains non-symbolic signatures for ops that we have sym-intified the signature of.
// However, in certain cases (such as static runtime), we call the native versions of the ops ... |
33588f9c55cbf0965ae65961a3155616ca59e0bd4c3ede018a6cb139be73d4ed | C/C++ | 2,877 | 60 | #pragma once
#include <ATen/core/Tensor.h>
#include <ATen/native/DispatchStub.h>
namespace at::native {
using lstm_fn = void(*)(Tensor&, Tensor&, Tensor&, const Tensor&, TensorList, TensorList, bool, int64_t, double, bool, bool, bool);
using rnn_fn = void(*)(Tensor&, Tensor&, const Tensor&, const Tensor&, TensorList... |
6789dc41ba21403064034f1bb58613048edabfaa1591d762718a5d56c0371e3e | C/C++ | 2,883 | 102 | #ifndef __LIBGRAVIS_EXCEPTION_H__
#define __LIBGRAVIS_EXCEPTION_H__
/******************************************************************************
** Title: Exception.h
** Description: Base class for exceptions in libgravis.
**
** Author: Jean-Sebastien Pierrard, 2005
** Computer Science Department, University B... |
04606c26f720e9b07e14ef5e64f4f4c2ad525205b834cd340654f00d8b4d6a67 | C/C++ | 2,890 | 57 | //******************************************************************************************************************************************************
// GeneralOperations.h
// Author: Kevin Iamiceli
// Modified March 9, 2003
// Version 3.00
//*********************************************************************... |
1e98a7673a884734388b705b0e03198ce7bda84430a4e0031b33a193167bd52e | C/C++ | 2,897 | 102 | #pragma once
// Indexing tensors by tensors
#include <ATen/core/List.h>
#include <ATen/core/Tensor.h>
#include <ATen/native/DispatchStub.h>
#include <ATen/native/ReductionType.h>
namespace at {
struct TensorIterator;
}
namespace at::native {
using index_put_with_sort_fn = void (*)(
Tensor&,
const c10::List... |
61e91d9cae44ae69b232691206d603241aee7960135811f44637f5fed510fea3 | C/C++ | 2,906 | 113 | /******************************************************************************
** Title: tArrayIO.h
** Description: Input/Output for tArrays.
**
** Author: Reinhard Knothe / Michael Keller, 2006
** Brian Amberg, 2007
** Computer Science Department, University Basel (CH)
... |
0c5ed130a96c0e90e39aa9c85848dfe3b7537525b2b5916604c9a5aefb0dde1f | C/C++ | 2,920 | 82 | /***************************************************************************
*
* Author: "Jasenko Zivanov"
* MRC Laboratory of Molecular Biology
*
* This program is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foun... |
96f8fb8d14772436c39d46baa8e30b308ca9455ed8108ac3e168d7b54ee3fc26 | C/C++ | 2,926 | 104 | #ifndef CPU_SETTINGS_H_
#define CPU_SETTINGS_H_
#include "src/acc/settings.h"
// GENERAL -----------------------------
#define MAX_RESOL_SHARED_MEM 32
#define BLOCK_SIZE 128
// -------------------------------------
// COARSE DIFF -------------------------
#define PREFETCH_FRACTION_3D 4 //4
#define PREFETCH... |
385314ae11e7be94e15cd43f00a7d9245de1c81ebfbcd82d0cd2a6e3235f7efa | C/C++ | 2,927 | 93 | #pragma once
#include <ATen/core/Generator.h>
#include <c10/core/Allocator.h>
#include <c10/core/Device.h>
#include <c10/core/Stream.h>
namespace at {
// AcceleratorHooksInterface is a shared interface provided by all
// accelerators to allow generic code.
// This interface is hook-based as it corresponds to all t... |
12740d9cd7593b8d13b56cca75bcd203208d92be4e00cc1ae8c2f0c58e106551 | C/C++ | 2,929 | 104 | #pragma once
#include <ATen/core/ivalue.h>
#include <utility>
namespace c10 {
struct EnumType;
using EnumTypePtr = std::shared_ptr<EnumType>;
using EnumNameValue = std::pair<std::string, IValue>;
struct TORCH_API EnumType : public NamedType {
friend struct Type;
static const TypeKind Kind = TypeKind::EnumType;
... |
509ba4b442770d0018dd92cc0a550c39cb9bcda158eed5aaa2e008550501ef2f | C/C++ | 2,939 | 105 | #pragma once
#include <c10/core/ScalarType.h>
#include <cuda.h>
#include <library_types.h>
namespace at::cuda {
template <typename scalar_t>
cudaDataType getCudaDataType() {
static_assert(false && sizeof(scalar_t), "Cannot convert type to cudaDataType.");
return {};
}
template<> inline cudaDataType getCudaData... |
09f518fa0cdb414e75132bf864af2d3fe8bdf7fe9e7b176e125159b61df6b7ff | C/C++ | 2,948 | 100 | /* FILE defs.h */
/* Globals: NONE is only system dependent one */
/* See also array.h */
#include <math.h>
#include <stdlib.h>
#include <unistd.h>
#include <string.h>
/* ******************************************************************** */
#define MAX_EVENTS 200 /* Should be >= MAX_EVENTS of vorte... |
0e219af861cc94de3b6cc8e7e750aa0626baa4db3860cb50b6b5dbb386451f85 | C/C++ | 2,963 | 75 | #ifndef TOMOGRAM_SET_H
#define TOMOGRAM_SET_H
#include <string>
#include <vector>
#include <src/metadata_table.h>
#include <src/filename.h>
#include <src/jaz/tomography/tomogram.h>
#include <src/jaz/gravis/t4Matrix.h>
#include <src/ctf.h>
#include <src/transformations.h>
class TomogramSet
{
public:
MetaData... |
bfe791fea4869da91ad835aee4f589e8ea728d5d9543933327229598047ff46e | C/C++ | 2,964 | 91 | /*
* Copyright (C) 1992-1994 Bernd Feige
* This file is part of avg_q and released under the GPL v3 (see avg_q/COPYING).
*/
/*
* mfx_header_format.h
*
*
* This header file is for header information dealing withe the Munster File eXchange format (MFX)
*
* NOTE :
*
* This header file MUST be c-compatible f... |
19ac5aaae7109edae8cebda2aa9572bce6231585f963a5dda1a62f9a4e04159e | C/C++ | 2,976 | 148 | #ifndef DYN_LOG_H
#define DYN_LOG_H
#include <string>
#include <sys/time.h>
class Logger;
class IOParser;
class Log
{
public:
static void print(std::string s);
static void extend(std::string s);
static void warn(std::string s);
static void printBinaryChoice(
std::string start, bool condition,
... |
5fc3780eaab20b64af7b8ee9ee5b946de61c9af5557a058042619ab38b74235d | C/C++ | 2,979 | 97 | #ifndef DYN_TOMOGRAM_H
#define DYN_TOMOGRAM_H
#include <src/jaz/image/buffered_image.h>
#include <vector>
#include <src/jaz/gravis/t4Matrix.h>
#include <src/jaz/optics/optics_data.h>
#include <src/ctf.h>
#include "motion/2D_deformation.h"
#include <memory>
class ParticleIndex;
class ParticleSet;
class Tomogram
{
pu... |
aa5d551bade43bc091f7e7b91683349ac8774e6052128ccc78e03b4148635c03 | C/C++ | 2,980 | 97 | #pragma once
#include <ATen/Tensor.h>
#include <c10/core/QScheme.h>
#ifdef USE_FBGEMM
C10_DIAGNOSTIC_PUSH_AND_IGNORED_IF_DEFINED("-Wextra-semi")
#include <fbgemm/Fbgemm.h>
#include <fbgemm/FbgemmSparse.h>
#include <ATen/native/ao_sparse/quantized/cpu/packed_params.h>
C10_DIAGNOSTIC_POP()
namespace ao::sparse {
str... |
ff615273b108701901ea645a80934598cf0db3bf50c535d6a82ef43fc6591af8 | C/C++ | 2,985 | 109 | #ifndef DEFOCUS_REFINE_PROGRAM_H
#define DEFOCUS_REFINE_PROGRAM_H
#include <string>
#include <src/jaz/math/t_complex.h>
#include <src/jaz/image/buffered_image.h>
#include <src/jaz/optics/aberration_fit.h>
#include <src/jaz/tomography/particle_set.h>
#include <src/jaz/gravis/t4Matrix.h>
#include <vector>
#include "ref... |
cdf48d8187d8f314b4f5ed888826dabbb5e80035f3a59606b8681445e5b71cf4 | C/C++ | 2,989 | 74 | /*
* Copyright (c) Facebook, Inc. and its affiliates.
* All rights reserved.
*
* This source code is licensed under the BSD-style license found in the
* LICENSE file in the root directory of this source tree.
*/
#pragma once
#include <stddef.h>
#include <stdint.h>
#include <qnnpack/params.h>
#include <pthread... |
8f0ba515a6b4708f4df5962614eb08147844315a43b05835048b08c2ec65bc04 | C/C++ | 2,995 | 108 |
#ifndef DAMAGE_H
#define DAMAGE_H
#include <string>
#include <src/jaz/gravis/t4Matrix.h>
#include <src/jaz/gravis/t2Vector.h>
#include <src/jaz/image/buffered_image.h>
#include <vector>
class Damage
{
public:
static void applyWeight(
RawImage<float>& stack,
double pixelSize,
const std::vector<doub... |
818a1a739e65a4fd5b3f145b27bded870c7325e57be8e335eddc2ec447fee614 | C/C++ | 2,996 | 99 | #ifndef CUDA_AUTOPICKER_H_
#define CUDA_AUTOPICKER_H_
#include "src/mpi.h"
#include "src/autopicker.h"
#include "src/autopicker_mpi.h"
#include "src/projector.h"
#include "src/complex.h"
#include "src/image.h"
#include "src/acc/cuda/cuda_mem_utils.h"
#include "src/acc/acc_projector.h"
#include "src/acc/cuda/cuda_sett... |
f8d2925a707810acdedb8d04050c2bbe00cd6a79c9febe614725895830d211b7 | C/C++ | 3,003 | 118 | /*
* Copyright (c) Facebook, Inc. and its affiliates.
* All rights reserved.
*
* This source code is licensed under the BSD-style license found in the
* LICENSE file in the root directory of this source tree.
*/
#pragma once
#include <algorithm>
#include <cassert>
#include <cstddef>
#include <cstdlib>
#include ... |
b263a9308cbff9dc86aa236ea07900b9e8977fd5f33c573bf3582c1a6de94e53 | C/C++ | 3,006 | 109 | #pragma once
#include <ATen/Utils.h>
#include <c10/util/ArrayRef.h>
namespace at {
/// MatrixRef - Like an ArrayRef, but with an extra recorded strides so that
/// we can easily view it as a multidimensional array.
///
/// Like ArrayRef, this class does not own the underlying data, it is expected
/// to be used in sit... |
b41cde7de9a3c696457360f92b9ad80136bd389522c4fc195852a47ce75be515 | C/C++ | 3,015 | 87 | /*
* Copyright (C) 2008 Bernd Feige
* This file is part of avg_q and released under the GPL v3 (see avg_q/COPYING).
*/
#ifndef _ASCFILE_H
#define _ASCFILE_H
#if 0
{{{ Description
This header file contains common definitions for the 'asc' file format,
which is a format to store epochs of data including channel n... |
ee478fec13c7df7b2f65c78902b25546537549f452a864c1ba4cf981aa9bb881 | C/C++ | 3,030 | 70 | #pragma once
#include <ATen/core/CachingHostAllocator.h>
#include <c10/core/Allocator.h>
#include <c10/cuda/CUDAStream.h>
#include <c10/util/Deprecated.h>
namespace at::cuda {
//
// A caching allocator for CUDA host allocations (pinned memory).
//
// This provides a drop-in replacement for THCudaHostAllocator, which... |
6aca51ae45b50a2fcba514c9140a79f6a681aac834830a4e6f455e3cf9992960 | C/C++ | 3,040 | 141 | #ifndef Z_IO_TOOLS_H
#define Z_IO_TOOLS_H
#include <vector>
#include <string>
#include <fstream>
#include <iostream>
#include <string>
#include <sstream>
#include <src/error.h>
class ZIO
{
public:
template <typename T>
static void writeDat(
const std::vector<T>& vec,
std::string fn,
long int begin =... |
5e4a23fca289085fbe8bd646b86377357d745735bf42a99c4f8771d42ac1c725 | C/C++ | 3,042 | 132 | #ifndef SUBTOMO_PROGRAM_H
#define SUBTOMO_PROGRAM_H
#include <string>
#include <vector>
#include <src/jaz/gravis/t4Matrix.h>
#include <src/jaz/gravis/t2Vector.h>
#include <src/jaz/image/buffered_image.h>
#include <src/jaz/tomography/optimisation_set.h>
#include <src/backprojector.h>
class ParticleSet;
class Particl... |
d5ced6bdfec6934a7960b5fa086237fe33e3496edd1fb74461d86b33ef7c8bb9 | C/C++ | 3,046 | 90 | /***************************************************************************
*
* Author: "Jasenko Zivanov"
* MRC Laboratory of Molecular Biology
*
* This program is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foun... |
68d875e3ebf56f52db2fdcc424393ffcaa04dec99788618d48bde60c642d5745 | C/C++ | 3,056 | 122 | #ifndef _ZNZLIB_H_
#define _ZNZLIB_H_
/*
znzlib.h (zipped or non-zipped library)
***** This code is released to the public domain. *****
***** Author: Mark Jenkinson, FMRIB Centre, University of Oxford *****
***** Date: September 2004 *****
... |
1b9e2230038a36ae64aa1325714dd3aa428e0fee1c9914a844c320a0b7f19976 | C/C++ | 3,062 | 103 | #pragma once
#include <cstddef>
#include <tuple>
// Modified from https://stackoverflow.com/questions/7943525/is-it-possible-to-figure-out-the-parameter-type-and-return-type-of-a-lambda
// Fallback, anything with an operator()
template <typename T>
struct function_traits : public function_traits<decltype(&T::operato... |
9e5149701565e3f333988ba907b3ecc90b42e0a83e3d737a9ad24b57d6536eec | C/C++ | 3,081 | 102 | /* Portions of this code are under:
Copyright (c) 2022 Advanced Micro Devices, Inc. All rights reserved.
*/
#ifndef HIP_AUTOPICKER_H_
#define HIP_AUTOPICKER_H_
#include "src/mpi.h"
#include "src/autopicker.h"
#include "src/autopicker_mpi.h"
#include "src/projector.h"
#include "src/complex.h"
#include "src/image.h"
... |
1b0aafcf110a565ee044cfc511cc51f28ff384843723b8ad3686656942873b8f | C/C++ | 3,087 | 71 | #pragma once
#include <c10/metal/common.h>
#define MAX_THREADGROUP_SIZE static_cast<uint32_t>(1024)
C10_METAL_CONSTEXPR uint32_t SUM_NCHAINS = 8;
// Threadgroup size the host dispatches the innermost / innermost_chunk
// reduction kernels with; both carve the threadgroup into whole simdgroups.
C10_METAL_CONSTEXPR uin... |
362daa08357837e1720e35933a804f5f7c31b731a9044e0773dc81b2abf86742 | C/C++ | 3,088 | 97 | #pragma once
#include <mutex>
#include <atomic>
#include <cstddef>
#include <utility>
#include <list>
#include <map>
#include <sycl/sycl.hpp>
using memoryStorage = std::byte*;
using memoryAllocMap = std::map<memoryStorage,memoryStorage>;
using memoryFreeMap = std::map<memoryStorage,memoryStorage>;
using memoryFreeSiz... |
53d7edd709504a6c4fac1b4430edbf5d83d2dfd1db9bfdcbe53993b76df4a75f | C/C++ | 3,089 | 74 | #pragma once
#include <ATen/detail/CUDAHooksInterface.h>
#include <ATen/Generator.h>
// TODO: No need to have this whole header, we can just put it all in
// the cpp file
namespace at::cuda::detail {
// Set the callback to initialize Magma, which is set by
// torch_cuda_cu. This indirection is required so magma_in... |
e5ce608778b2af5f579cc6d5ca6e97562dfd07f2745f1d2a2b3f94999bff7e98 | C/C++ | 3,093 | 86 | #ifndef WAVG_IMPL_KERNEL_H_
#define WAVG_IMPL_KERNEL_H_
#include <vector>
#include <algorithm>
#include <iostream>
#include <limits>
#include <chrono>
#include <cassert>
#include <sycl/sycl.hpp>
#include "src/acc/acc_projectorkernel_impl.h"
#include "src/acc/sycl/sycl_dev.h"
#include "src/acc/sycl/sycl_kernels/sycl_u... |
ef6cdd983b8981c2e8ca1dab9b9ae78c4390847c54e3153a41b5c5a21c4b70fa | C/C++ | 3,093 | 110 | #pragma once
#include <ATen/core/Tensor.h>
#include <ATen/TensorIterator.h>
#include <ATen/native/DispatchStub.h>
#include <ATen/native/NonEmptyUtils.h>
#ifndef AT_PER_OPERATOR_HEADERS
#include <ATen/Functions.h>
#else
#include <ATen/ops/arange.h>
#endif
namespace at::native {
using unfold_backward_fn = void (*)(
... |
56a46565ed0ffd775f632433378cecdcede9df408e6b3682dea1f622d1796c20 | C/C++ | 3,099 | 121 | /******************************************************************************
** Title: OBJReader.h
** Description: Class to import a .obj file info a Mesh.
**
** Author: Jean-Sebastien Pierrard, 2005
** Computer Science Department, University Basel (CH)
**
********************************... |
5fbc9b67e5b711f56a961342ee3398502bbf718de0747fc3f92eea011989142a | C/C++ | 3,104 | 83 | #pragma once
// On Windows, math.h needs to be included with _USE_MATH_DEFINES defined to
// access constants such as M_SQRT2 and M_2_SQRTPI.
#ifdef _WIN32
#define _USE_MATH_DEFINES
#include <cmath>
#include <math.h>
#endif // _WIN32
#include <ATen/cpu/vec/vec.h>
#include <c10/util/BFloat16.h> // For c10::is_reduced_... |
a29504d7345de77a05b382d7a287b384821c466fdfea25c0cd28b36d6645dc6b | C/C++ | 3,110 | 93 | /* FILE anal.h */
/* Analysis specific constants: non-user changable */
/* (deffs.h: identical to reach's copy. Deffs for grab go here */
/* #define VERSION 7293 Defined in Makefile (different) */
/* #define MAX_FRAMES 16000 Already in deffs.h */
/* #define MAX_SPIKES 3000 Already in deffs.h */
#defin... |
bfb41cd4826811cd77a8eedb050d57375f4fa6ae8a4ca9a6fcdb60c0a7e7963a | C/C++ | 3,111 | 99 | #pragma once
#include <c10/macros/Macros.h>
#include <c10/util/Exception.h>
#include <cstring>
#include <optional>
#include <ostream>
#include <string>
#include <string_view>
#include <utility>
namespace c10 {
// TODO: consider storing namespace separately too
struct OperatorName final {
std::string name;
std::... |
8ccc776de52e278b5b40035a45900ff786fa5787fcd13ee6fdb7f1d003644481 | C/C++ | 3,150 | 116 | /***************************************************************************
*
* Author: "Jasenko Zivanov"
* MRC Laboratory of Molecular Biology
*
* This program is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foun... |
d72d906a5f66a96c8812eee8c0b71a291ae5361029b913c11e899838c80204d0 | C/C++ | 3,160 | 89 | #ifndef DYN_ANSI_CODES_H
#define DYN_ANSI_CODES_H
#include <string>
#define ANSI_BLACK "\033[30m"
#define ANSI_RED "\033[31m"
#define ANSI_GREEN "\033[32m"
#define ANSI_YELLOW "\033[33m"
#define ANSI_BLUE "\033[34m"
#define ANSI_MAGENTA "\033[35m"
#define ANSI_CYAN "\033[36m"
#define ANSI_WHITE... |
11a892c1c6424b3a58145141d31b1a7bb4742410897bfb2cb79e8bf2276709c0 | C/C++ | 3,175 | 80 | #pragma once
#include <ATen/cpu/vec/intrinsics.h>
#include <ATen/cpu/vec/vec_base.h>
#if defined(CPU_CAPABILITY_SVE256)
// Define the data type of VLS(vector-length specific).
typedef svbool_t vls_pred_t
__attribute__((arm_sve_vector_bits(VECTOR_WIDTH * 8)));
typedef svint8_t vls_int8_t
__attribute__((arm_s... |
de9ce9c05191ca85cd2defef1550c695bd44cf7db2a625ad68a6e1e37ef214e8 | C/C++ | 3,179 | 117 | // Copyright © 2022 Apple Inc.
#pragma once
#include <ATen/Device.h>
#include <c10/core/Allocator.h>
#include <c10/macros/Macros.h>
#include <c10/util/Exception.h>
#ifdef __OBJC__
// Metal.h pulls in Foundation.h, which transitively includes CarbonCore
// headers that emit a flood of -Wdeprecated-declarations on rec... |
abdde5852a44c8ea362ec3565e9162d7d179e15f35a6d21ef67a2d2924f814ee | C/C++ | 3,181 | 139 | #ifndef DRAWING_TOOLS_H
#define DRAWING_TOOLS_H
#include <vector>
#include <string>
#include <src/jaz/image/buffered_image.h>
class Drawing
{
public:
template <typename T>
static void drawCross(
gravis::i2Vector location,
T value,
int size,
RawImage<T>& target);
template <typename T>
st... |
5205c23f8c5a52e16156e8cd97a0e35a06c8d08f44363eeb77c6fd8cc3529822 | C/C++ | 3,184 | 76 | /***************************************************************************************************
* Copyright (c) 2017 - 2022 NVIDIA CORPORATION & AFFILIATES. All rights reserved.
* SPDX-License-Identifier: BSD-3-Clause
*
* Redistribution and use in source and binary forms, with or without
* modification, are p... |
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