sha256 stringlengths 64 64 | language stringclasses 27
values | size int32 1 491k | lines int32 1 23.2k | content stringlengths 1 200k |
|---|---|---|---|---|
fa28bd83ab56668721bf925111dbee09c3f53ac5956424af357e46b7371fbb5f | C++ | 2,146 | 68 | //---------------------------------------------------------------------------//
// Copyright (c) 2014 Roshan <thisisroshansmail@gmail.com>
//
// Distributed under the Boost Software License, Version 1.0
// See accompanying file LICENSE_1_0.txt or copy at
// http://www.boost.org/LICENSE_1_0.txt
//
// See http://boostorg... |
f244364efc84380f024257332f24957dc68facb293ddf10ac8101e7dce1fb9eb | C++ | 2,150 | 66 | //---------------------------------------------------------------------------//
// Copyright (c) 2014 Roshan <thisisroshansmail@gmail.com>
//
// Distributed under the Boost Software License, Version 1.0
// See accompanying file LICENSE_1_0.txt or copy at
// http://www.boost.org/LICENSE_1_0.txt
//
// See http://boostorg... |
570d9bdaed1844c814b3e05085d3814165e72401fffc502e3b0946067c7596c9 | C++ | 2,151 | 94 | //
// promise.cpp
// ~~~~~~~~~~~
//
// Copyright (c) 2021-2022 Klemens D. Morgenstern
// (klemens dot morgenstern at gmx dot net)
//
// Distributed under the Boost Software License, Version 1.0. (See accompanying
// file LICENSE_1_0.txt or copy at http://www.boost.org/LICENSE_1_0.txt)
//
// Dis... |
0188598f8fe151d39dfb0e28ae8c4d7776251fd312321adc483ba7bf24094e92 | C++ | 2,152 | 60 | #include <cmath>
#include "Transcript.h"
intScore Transcript::alignScore(char **Read1, char *G, Parameters &P) {//re-calculates score and number of mismatches
maxScore=0;
nMM=0;
nMatch=0;
if (nExons==0)
return maxScore;
char* R=Read1[roStr==0 ? 0:2];
for (uint iex=0;iex<nExons... |
72e951c06cc36584ca885812ed018021244b556a3dfa650315f17042173cd86b | C++ | 2,152 | 101 | //
// scheduler.cpp
// ~~~~~~~~~~~~~
//
// Copyright (c) 2003-2022 Christopher M. Kohlhoff (chris at kohlhoff dot com)
//
// Distributed under the Boost Software License, Version 1.0. (See accompanying
// file LICENSE_1_0.txt or copy at http://www.boost.org/LICENSE_1_0.txt)
//
// Disable autolinking for unit tests.
#i... |
bc37488dc0b2613342f2dde8f1e5a09865b510e01981f0e857902494959d2b42 | C++ | 2,155 | 118 | //
// assert_test2.cpp - a test for BOOST_ASSERT and NDEBUG
//
// Copyright (c) 2014 Peter Dimov
//
// Distributed under the Boost Software License, Version 1.0.
// See accompanying file LICENSE_1_0.txt or copy at
// http://www.boost.org/LICENSE_1_0.txt
//
#include <boost/detail/lightweight_test.hpp>
#include <st... |
89080d685550ebcacd74d08921178be8ef2df33e410d8db39b696c9b72e1069f | C++ | 2,156 | 83 | //
// Copyright (c) 2016-2019 Vinnie Falco (vinnie dot falco at gmail dot com)
//
// Distributed under the Boost Software License, Version 1.0. (See accompanying
// file LICENSE_1_0.txt or copy at http://www.boost.org/LICENSE_1_0.txt)
//
// Official repository: https://github.com/boostorg/beast
//
// Test that header ... |
474d5a28af2918b93c2e53712900ca4d2e2cce946db83f4faf1bc26516da66f4 | C++ | 2,159 | 84 |
#include <iostream>
#include <Eigen/Core>
#include <bench/BenchUtil.h>
using namespace Eigen;
#ifndef REPEAT
#define REPEAT 100000
#endif
#ifndef TRIES
#define TRIES 20
#endif
typedef double Scalar;
template <typename MatrixType>
__attribute__ ((noinline)) void bench_reverse(const MatrixType& m)
{
int rows = m.r... |
e229d9ee35349b50de068dfe69ec3de41ac252352882a40a1ee1be5eaf1b69f9 | C++ | 2,160 | 64 | #include "../src/api_config.h"
#include "../src/stream_info_impl.h"
#include <loguru.hpp>
#include <catch2/catch.hpp>
TEST_CASE("streaminfo matching via XPath", "[basic][streaminfo][xml]") {
lsl::stream_info_impl info(
"streamname", "streamtype", 8, 500, lsl_channel_format_t::cft_string, "sourceid");
auto channel... |
568ac119f5e6418f1fbcfbdf185d724657d7f3539b47822da229ac5d015626b2 | C++ | 2,161 | 48 | // Copyright 2008, Google Inc.
// All rights reserved.
//
// Redistribution and use in source and binary forms, with or without
// modification, are permitted provided that the following conditions are
// met:
//
// * Redistributions of source code must retain the above copyright
// notice, this list of conditions ... |
aa9c407ca57f0bdb98547551e70a34a93cbabf032232979db86cb5b7ef298068 | C++ | 2,163 | 64 | //---------------------------------------------------------------------------//
// Copyright (c) 2013 Kyle Lutz <kyle.r.lutz@gmail.com>
//
// Distributed under the Boost Software License, Version 1.0
// See accompanying file LICENSE_1_0.txt or copy at
// http://www.boost.org/LICENSE_1_0.txt
//
// See http://boostorg.gi... |
8976723b08aa3800c0c8a04f2cdcec52a96ff7106ebb646c48ee836ee5111d66 | C++ | 2,164 | 65 | //---------------------------------------------------------------------------//
// Copyright (c) 2014 Roshan <thisisroshansmail@gmail.com>
//
// Distributed under the Boost Software License, Version 1.0
// See accompanying file LICENSE_1_0.txt or copy at
// http://www.boost.org/LICENSE_1_0.txt
//
// See http://boostorg... |
53cc2f696b3a038f3434ec8e79358e67e9e5cf0028e2aa3a2d6adf73ee623fca | C++ | 2,166 | 91 | //
// Copyright (c) 2016-2019 Vinnie Falco (vinnie dot falco at gmail dot com)
//
// Distributed under the Boost Software License, Version 1.0. (See accompanying
// file LICENSE_1_0.txt or copy at http://www.boost.org/LICENSE_1_0.txt)
//
// Official repository: https://github.com/boostorg/beast
//
#include <boost/conf... |
d934d7ed5c786e1ee140601a3b6f34009143b58e19ebb8bd3608f7d01e495dfc | C++ | 2,167 | 52 |
/*
Copyright Barrett Adair 2016-2017
Distributed under the Boost Software License, Version 1.0.
(See accompanying file LICENSE.md or copy at http ://boost.org/LICENSE_1_0.txt)
*/
#include <boost/callable_traits/qualified_class_of.hpp>
#include "test.hpp"
template<typename T>
struct is_substitution_failure_qualifie... |
1019cb40ea247f7d19bb6db9277b1dd5d1cd8c5fe6e98f223e0b50eeda3e15d8 | C++ | 2,168 | 93 | /**
* Copyright (c) 2016-present, Facebook, Inc.
* All rights reserved.
*
* This source code is licensed under the MIT license found in the
* LICENSE file in the root directory of this source tree.
*/
#include "model.h"
#include "loss.h"
#include "utils.h"
#include <algorithm>
#include <stdexcept>
namespace fa... |
51d51a2a4f665b6ee6d9158cc9cc07fc21ef2ed075c67e87912909eedf6410d9 | C++ | 2,168 | 58 | #include "Genome.h"
#include "SuffixArrayFuns.h"
#include "PackedArray.h"
#include "ErrorWarning.h"
#include "streamFuns.h"
void Genome::genomeOutLoad(){//allocate and load *output* Genome
Parameters P1;
ifstream parFile((pGe.gDir+("/genomeParameters.txt")).c_str());
if (parFile.good()) {
P.... |
1315cb4c45479400c4a33c3e6c0ec4d5ce9d2d3c26ca9018b62d9dd9cfc8f463 | C++ | 2,170 | 97 | // Boost.Bimap
//
// Copyright (c) 2006-2007 Matias Capeletto
//
// Distributed under the Boost Software License, Version 1.0.
// (See accompanying file LICENSE_1_0.txt or copy at
// http://www.boost.org/LICENSE_1_0.txt)
// VC++ 8.0 warns on usage of certain Standard Library and API functions that
// can be cause bu... |
a53806a01d330f32ee43d0d939928ae6283fa399ec94b755bb79a7947d7555bb | C++ | 2,175 | 91 |
#include <math.h>
#include "mex.h"
#include "matrix.h"
#define REAL float
void mexFunction( int nlhs, mxArray *plhs[], int nrhs, const mxArray *prhs[] )
{
if(nrhs!=3) {
mexPrintf("wrong usage!!\n",nrhs);
return;
} else if(nlhs>4) {
printf("Too many output arguments\n");
return;
}
int pcnt =... |
cb8852514a1667d75a1f4142bf76d106414b89d9aad5e56894e64feb5df0a757 | C++ | 2,175 | 77 | // (C) Copyright Eric Niebler 2008.
// Use, modification and distribution are subject to the
// Boost Software License, Version 1.0. (See accompanying file
// LICENSE_1_0.txt or copy at http://www.boost.org/LICENSE_1_0.txt)
#include <boost/test/unit_test.hpp>
#include <boost/accumulators/accumulators.hpp>
#include... |
1f990611050327e12eae794748bd0b3b5c1c0e9b6352a6b95f6e5722fbe59bf8 | C++ | 2,177 | 114 | //
// async_tcp_echo_server.cpp
// ~~~~~~~~~~~~~~~~~~~~~~~~~
//
// Copyright (c) 2003-2022 Christopher M. Kohlhoff (chris at kohlhoff dot com)
//
// Distributed under the Boost Software License, Version 1.0. (See accompanying
// file LICENSE_1_0.txt or copy at http://www.boost.org/LICENSE_1_0.txt)
//
#include <cstdlib... |
f4805a84e8a745670efcfacccdf7fd96add8e5ceeb5da9bee0ebf14dfca6349d | C++ | 2,178 | 101 | //
// async_file_copy.cpp
// ~~~~~~~~~~~~~~~~~~~
//
// Copyright (c) 2003-2022 Christopher M. Kohlhoff (chris at kohlhoff dot com)
//
// Distributed under the Boost Software License, Version 1.0. (See accompanying
// file LICENSE_1_0.txt or copy at http://www.boost.org/LICENSE_1_0.txt)
//
#include <iostream>
#include ... |
9db5b355895badadb4b2cf10402003bb53eb0f953620f13b9d60e5bf84b1ba62 | C++ | 2,186 | 72 | //---------------------------------------------------------------------------//
// Copyright (c) 2013-2014 Kyle Lutz <kyle.r.lutz@gmail.com>
//
// Distributed under the Boost Software License, Version 1.0
// See accompanying file LICENSE_1_0.txt or copy at
// http://www.boost.org/LICENSE_1_0.txt
//
// See http://boosto... |
037289fedca1c6ba7b15883f9d8b42f797d668c331e22796593f98fd67306433 | C++ | 2,205 | 68 | //---------------------------------------------------------------------------//
// Copyright (c) 2014 Roshan <thisisroshansmail@gmail.com>
//
// Distributed under the Boost Software License, Version 1.0
// See accompanying file LICENSE_1_0.txt or copy at
// http://www.boost.org/LICENSE_1_0.txt
//
// See http://boostorg... |
f3a7443a1fdb849d652048fba0e01b1f1bab634575874a9b427d3836083ac883 | C++ | 2,207 | 65 | #include "SoloFeature.h"
#include "streamFuns.h"
SoloFeature::SoloFeature(Parameters &Pin, ReadAlignChunk **RAchunk, Transcriptome &inTrans, int32 feTy, SoloReadBarcode *readBarSumIn, SoloFeature **soloFeatAll)
: P(Pin), RAchunk(RAchunk), Trans(inTrans), featureType(feTy), soloFeatAll(soloFeatAll), pSolo(P... |
58e6501890380dd734c69f9a39dfdcd264a276a5f1dc0135a2f55214c7950f01 | C++ | 2,209 | 101 | //
// Copyright (c) 2016-2019 Vinnie Falco (vinnie dot falco at gmail dot com)
//
// Distributed under the Boost Software License, Version 1.0. (See accompanying
// file LICENSE_1_0.txt or copy at http://www.boost.org/LICENSE_1_0.txt)
//
// Official repository: https://github.com/vinniefalco/CppCon2018
//
#include "li... |
b42ca1a6d0a1e43bc576b4ff7776c6d2c37234f6dc2a76f2735f261b4a47a526 | C++ | 2,209 | 57 | // Copyright 2006, Google Inc.
// All rights reserved.
//
// Redistribution and use in source and binary forms, with or without
// modification, are permitted provided that the following conditions are
// met:
//
// * Redistributions of source code must retain the above copyright
// notice, this list of conditions ... |
514354439b4c33e70b86beb981872aedb62815e9dd3fdcfb3065b01d5170edbe | C++ | 2,210 | 77 | // Copyright 2021 Peter Dimov
// Distributed under the Boost Software License, Version 1.0.
// https://www.boost.org/LICENSE_1_0.txt
#include<boost/bind/apply.hpp>
#include<boost/bind/bind.hpp>
#include <boost/core/lightweight_test.hpp>
#include <boost/config.hpp>
#include <boost/config/pragma_message.hpp>
#if define... |
de3aef5652070aeac421c01eaa20f0cacfea79e8488585d69b02a78412488d9e | C++ | 2,211 | 63 | //---------------------------------------------------------------------------//
// Copyright (c) 2013-2014 Kyle Lutz <kyle.r.lutz@gmail.com>
//
// Distributed under the Boost Software License, Version 1.0
// See accompanying file LICENSE_1_0.txt or copy at
// http://www.boost.org/LICENSE_1_0.txt
//
// See http://boosto... |
9859095238364dfdb150a398013096d7fce5f5bc6790d7e2b32d828cbeeeb9b8 | C++ | 2,215 | 77 | #include <boost/config.hpp>
#if defined(BOOST_MSVC)
#pragma warning(disable: 4786) // identifier truncated in debug info
#pragma warning(disable: 4710) // function not inlined
#pragma warning(disable: 4711) // function selected for automatic inline expansion
#pragma warning(disable: 4514) // unreferenced inline re... |
538414c27a593ab8dc34c37b5c877eb3a022d75d1b481ef14ceca00914929754 | C++ | 2,221 | 57 | // Copyright 2008, Google Inc.
// All rights reserved.
//
// Redistribution and use in source and binary forms, with or without
// modification, are permitted provided that the following conditions are
// met:
//
// * Redistributions of source code must retain the above copyright
// notice, this list of conditions ... |
7d505ad6310f6ec0afb35b0d1e6bead19e5fce86cd02de298fd89664ce1d9c62 | C++ | 2,222 | 78 | // (C) Copyright Eric Niebler 2005.
// Use, modification and distribution are subject to the
// Boost Software License, Version 1.0. (See accompanying file
// LICENSE_1_0.txt or copy at http://www.boost.org/LICENSE_1_0.txt)
#include <boost/test/unit_test.hpp>
#include <boost/accumulators/accumulators.hpp>
#include... |
7c1105bc690abcf548d2770c163607e4cb0c928478fadf0e2456f6d0bf989cb9 | C++ | 2,223 | 71 | //---------------------------------------------------------------------------//
// Copyright (c) 2013 Kyle Lutz <kyle.r.lutz@gmail.com>
//
// Distributed under the Boost Software License, Version 1.0
// See accompanying file LICENSE_1_0.txt or copy at
// http://www.boost.org/LICENSE_1_0.txt
//
// See http://boostorg.gi... |
6141a806bf8ed7ff894c484003c9976b5127dc388274f6ec166e52c8ab2c8be1 | C++ | 2,244 | 88 | //
// receiver.cpp
// ~~~~~~~~~~~~
//
// Copyright (c) 2003-2022 Christopher M. Kohlhoff (chris at kohlhoff dot com)
//
// Distributed under the Boost Software License, Version 1.0. (See accompanying
// file LICENSE_1_0.txt or copy at http://www.boost.org/LICENSE_1_0.txt)
//
#include <array>
#include <iostream>
#inclu... |
5677b645b37e489498fe51f3db5d4f96e877e47eee6b321b9b19ca162d691f56 | C++ | 2,247 | 71 | //---------------------------------------------------------------------------//
// Copyright (c) 2013 Kyle Lutz <kyle.r.lutz@gmail.com>
//
// Distributed under the Boost Software License, Version 1.0
// See accompanying file LICENSE_1_0.txt or copy at
// http://www.boost.org/LICENSE_1_0.txt
//
// See http://boostorg.gi... |
c7846ae9a200d82018e01ed0757f0da4b86857e4e24d374d5659933adb56066c | C++ | 2,249 | 76 | //---------------------------------------------------------------------------//
// Copyright (c) 2015 Jakub Szuppe <j.szuppe@gmail.com>
//
// Distributed under the Boost Software License, Version 1.0
// See accompanying file LICENSE_1_0.txt or copy at
// http://www.boost.org/LICENSE_1_0.txt
//
// See http://boostorg.gi... |
db0c3c42b385570b1d517e3ee927671b8fad4e206247fca738ec477222ac3d97 | C++ | 2,251 | 47 | // Copyright 2009, Google Inc.
// All rights reserved.
//
// Redistribution and use in source and binary forms, with or without
// modification, are permitted provided that the following conditions are
// met:
//
// * Redistributions of source code must retain the above copyright
// notice, this list of conditions ... |
83a7de455b14504155f608aea359ae74b643da1298a98723dbe7d0f345ff88e7 | C++ | 2,252 | 108 | //
// operation_state.cpp
// ~~~~~~~~~~~~~~~~~~~
//
// Copyright (c) 2003-2022 Christopher M. Kohlhoff (chris at kohlhoff dot com)
//
// Distributed under the Boost Software License, Version 1.0. (See accompanying
// file LICENSE_1_0.txt or copy at http://www.boost.org/LICENSE_1_0.txt)
//
// Disable autolinking for un... |
1489cba7b2ab3dafd47b42919199fa517b3b3df34fda1e83b313837549211427 | C++ | 2,255 | 56 | // This file is part of Eigen, a lightweight C++ template library
// for linear algebra.
//
// Copyright (C) 2010 Hauke Heibel <hauke.heibel@gmail.com>
//
// Eigen is free software; you can redistribute it and/or
// modify it under the terms of the GNU Lesser General Public
// License as published by the Free Software ... |
47876479ab3fe7fd2eb3151fcf38dfbca7e8eeb08955b7fb15b41b25084750a8 | C++ | 2,258 | 72 | #include <catch2/catch.hpp>
#include <lsl_cpp.h>
#include <thread>
namespace {
TEST_CASE("move C++ API types", "[move][basic]") {
lsl::stream_info info("movetest", "test", 1, lsl::IRREGULAR_RATE, lsl::cf_int32);
lsl::stream_outlet outlet(info);
lsl::continuous_resolver resolver("name", "movetest");
auto found_str... |
6cc65795e21c3d2a541d2270e95b21c1c7780edf533a5c5a52d33bf8d3fca42b | C++ | 2,260 | 56 | // This file is part of Eigen, a lightweight C++ template library
// for linear algebra.
//
// Copyright (C) 2010 Benoit Jacob <jacob.benoit.1@gmail.com>
//
// Eigen is free software; you can redistribute it and/or
// modify it under the terms of the GNU Lesser General Public
// License as published by the Free Softwar... |
8cfd508565b90fd453c37e30b0eddd9841a37314aa35e6079f7f26925948dd89 | C++ | 2,270 | 117 | //
// Copyright (c) 2016-2019 Vinnie Falco (vinnie dot falco at gmail dot com)
//
// Distributed under the Boost Software License, Version 1.0. (See accompanying
// file LICENSE_1_0.txt or copy at http://www.boost.org/LICENSE_1_0.txt)
//
// Official repository: https://github.com/boostorg/beast
//
#include <boost/conf... |
fb1d30364aa4cbe4b66348fc2c5b8495b35508269915d8ad51c8d29969fe5efc | C++ | 2,278 | 83 | //---------------------------------------------------------------------------//
// Copyright (c) 2013 Kyle Lutz <kyle.r.lutz@gmail.com>
//
// Distributed under the Boost Software License, Version 1.0
// See accompanying file LICENSE_1_0.txt or copy at
// http://www.boost.org/LICENSE_1_0.txt
//
// See http://boostorg.gi... |
85e95135ccb54412ae2c13d788b355649e781bd5f597eddbcc2448003732357d | C++ | 2,280 | 70 | //===----------------------------------------------------------------------===//
//
// The LLVM Compiler Infrastructure
//
// This file is dual licensed under the MIT and the University of Illinois Open
// Source Licenses. See LICENSE.TXT for details.
//
//===----------------------------------------... |
2d68af11c572711509620a44e71b0c1bed14df8dbcd441c0f6dce3a81ff743d1 | C++ | 2,284 | 71 | //---------------------------------------------------------------------------//
// Copyright (c) 2014 Roshan <thisisroshansmail@gmail.com>
//
// Distributed under the Boost Software License, Version 1.0
// See accompanying file LICENSE_1_0.txt or copy at
// http://www.boost.org/LICENSE_1_0.txt
//
// See http://boostorg... |
38488aeaf7c9985cdb2661006fbc715323fdaaf1f2e9c3a7dd0085d59cd92a2b | C++ | 2,284 | 102 | //
// range_based_for.cpp
// ~~~~~~~~~~~~~~~~~~~
//
// Copyright (c) 2003-2022 Christopher M. Kohlhoff (chris at kohlhoff dot com)
//
// Distributed under the Boost Software License, Version 1.0. (See accompanying
// file LICENSE_1_0.txt or copy at http://www.boost.org/LICENSE_1_0.txt)
//
#include <boost/asio/co_spawn... |
8861f47c56ecababe24dde6b15799d05b3b87f25b73372768cb40494af48ecbb | C++ | 2,284 | 126 | //
// Copyright (c) 2016-2019 Vinnie Falco (vinnie dot falco at gmail dot com)
//
// Distributed under the Boost Software License, Version 1.0. (See accompanying
// file LICENSE_1_0.txt or copy at http://www.boost.org/LICENSE_1_0.txt)
//
// Official repository: https://github.com/boostorg/beast
//
#include <boost/conf... |
3224f9e09f0f03cc65cb6cccbca76cbc38fcc8e64f5169a752917cc1eaae1c1c | C++ | 2,286 | 79 | // (C) Copyright Eric Niebler 2005.
// Use, modification and distribution are subject to the
// Boost Software License, Version 1.0. (See accompanying file
// LICENSE_1_0.txt or copy at http://www.boost.org/LICENSE_1_0.txt)
#include <boost/test/unit_test.hpp>
#include <boost/test/tools/floating_point_comparison.hp... |
3d3c24e22e369e0405281c8c3d496348d06ae888eead7e6dc9d86a233f9e65fa | C++ | 2,288 | 81 | //
// Copyright (c) 2016-2019 Vinnie Falco (vinnie dot falco at gmail dot com)
//
// Distributed under the Boost Software License, Version 1.0. (See accompanying
// file LICENSE_1_0.txt or copy at http://www.boost.org/LICENSE_1_0.txt)
//
// Official repository: https://github.com/boostorg/beast
//
// Test that header ... |
c8d8869163604efedd36bf36b779e3fa3241def43982702e91a3e40fd9cefe41 | C++ | 2,291 | 74 | #include "Transcript.h"
#include "serviceFuns.cpp"
int Transcript::variationAdjust(const Genome &mapGen, char *R)
{
Variation &Var=*mapGen.Var;
if (!Var.yes)
{//no variation
return 0;
};
int dScore=0;//change in the score
uint nMM1=0;
//for each block, check whether it overlaps o... |
23754e4f9797fc6f2c09c207f30c6e1fde6963d18f17a6ae27bb54560d8d7761 | C++ | 2,296 | 71 | //---------------------------------------------------------------------------//
// Copyright (c) 2014 Roshan <thisisroshansmail@gmail.com>
//
// Distributed under the Boost Software License, Version 1.0
// See accompanying file LICENSE_1_0.txt or copy at
// http://www.boost.org/LICENSE_1_0.txt
//
// See http://boostorg... |
b1985b7cb6e495e54c44948c9680bff4a7258071d8303a0cad8d02d8d3061747 | C++ | 2,296 | 74 | #include <catch2/catch.hpp>
#include <lsl_cpp.h>
#include <thread>
// clazy:excludeall=non-pod-global-static
namespace {
TEST_CASE("move C++ API types", "[move][basic]") {
lsl::stream_info info("movetest", "test", 1, lsl::IRREGULAR_RATE, lsl::cf_int32);
lsl::stream_outlet outlet(info);
lsl::continuous_resolver re... |
168bd6c07e16c5f513086a682ed7bee3fd61198cae3f5c33cb3fe5bb36fbe9a0 | C++ | 2,298 | 78 | #include "time_postprocessor.h"
#include <loguru.hpp>
#include <random>
#include <thread>
#include <catch2/catch.hpp>
template <std::size_t N>
inline void test_postproc_array(
lsl::time_postprocessor &pp, const double (&in)[N], const double (&expected)[N]) {
for (std::size_t i = 0; i < N; ++i) CHECK(pp.process_time... |
f14b8a1e69d52eef1a70053fb256818c7eca64e8eda08de43cf46e896e57fcc2 | C++ | 2,298 | 56 | // Copyright 2005, Google Inc.
// All rights reserved.
//
// Redistribution and use in source and binary forms, with or without
// modification, are permitted provided that the following conditions are
// met:
//
// * Redistributions of source code must retain the above copyright
// notice, this list of conditions ... |
3e92b38834419af1c610d8907a0624e6301ed9c83afe22ef41ff3871502d899a | C++ | 2,299 | 58 | #include "ReadAlign.h"
void ReadAlign::calcCIGAR(Transcript const &trOut, uint nMates, uint iExMate, uint leftMate) {
matesCIGAR.clear();
for (uint imate=0;imate<nMates;imate++) {
uint iEx1 = (imate==0 ? 0 : iExMate+1);
uint iEx2 = (imate==0 ? iExMate : trOut.nExons-1);
uint Mate=trOut... |
7b91f438531faaa0bce04eaaadafe144a8c8775e10ed451b7d4a4d10c5566f4e | C++ | 2,305 | 130 | //
// verify_test.cpp - a test for BOOST_VERIFY
//
// Copyright (c) 2002 Peter Dimov and Multi Media Ltd.
// Copyright (c) 2007 Peter Dimov
//
// Distributed under the Boost Software License, Version 1.0. (See
// accompanying file LICENSE_1_0.txt or copy at
// http://www.boost.org/LICENSE_1_0.txt)
//
#include <boos... |
562a2bb615e93186012823c9b41761769638a11e38b54498ad5f699038c8fd32 | C++ | 2,307 | 63 | // Copyright 2008, Google Inc.
// All rights reserved.
//
// Redistribution and use in source and binary forms, with or without
// modification, are permitted provided that the following conditions are
// met:
//
// * Redistributions of source code must retain the above copyright
// notice, this list of conditions ... |
828af3ec200383cd744a8b6bf7d17765568764505a3aacd34cdca9ef259cedc0 | C++ | 2,318 | 72 | //---------------------------------------------------------------------------//
// Copyright (c) 2013-2014 Kyle Lutz <kyle.r.lutz@gmail.com>
//
// Distributed under the Boost Software License, Version 1.0
// See accompanying file LICENSE_1_0.txt or copy at
// http://www.boost.org/LICENSE_1_0.txt
//
// See http://boosto... |
c19876bfd17fbb095108f2d1b84cc68d6f7194d62ce98ee5a07860ff984cf9de | C++ | 2,319 | 80 | /** @file components.cc
* @author David F. Gleich
* @date 2006-04-19
* @copyright Stanford University, 2006-2008
* Implement wrappers for connected component functions
*/
/** History
* 2006-04-19: Initial version
* 2007-07-09: Updated to use simple_csr_matrix graph type
*/
#include "include/matlab_bgl.h"
#... |
918fd2792eac7e4c7f65a054141fd0ced29f76e1bb60b8c6ce4c410afe8959ec | C++ | 2,320 | 69 | // (C) Copyright 2006 Eric Niebler, Olivier Gygi.
// Use, modification and distribution are subject to the
// Boost Software License, Version 1.0. (See accompanying file
// LICENSE_1_0.txt or copy at http://www.boost.org/LICENSE_1_0.txt)
// Test case for weighted_skewness.hpp
#include <boost/random.hpp>
#include ... |
f14abf6f94645d69f10cafa1d9b27bfbe1ccd2f1f6f84b9a54324963ea4cadbc | C++ | 2,321 | 56 | #include "Transcriptome.h"
#include "serviceFuns.cpp"
#include "ReadAnnotations.h"
void Transcriptome::geneFullAlignOverlap(uint nA, Transcript **aAll, int32 strandType, ReadAnnotFeature &annFeat)
{
// annFeat.fSet={};
// annFeat.fAlign = {};
// annFeat.ovType = 0; //exonic/intronic determination is not do... |
1c0c257b15a6452bdef7227e38739cb263f5f07d92b44bad50ed39f9a16c8124 | C++ | 2,327 | 83 | //
// experimental/coro/stack_test.cpp
// ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
//
// Copyright (c) 2021-2022 Klemens D. Morgenstern
// (klemens dot morgenstern at gmx dot net)
//
// Distributed under the Boost Software License, Version 1.0. (See accompanying
// file LICENSE_1_0.txt or copy at http:/... |
d437ba5e2ea185f691679812b6f73d079a2cd5108597d020e5f2fdda493fc1ff | C++ | 2,331 | 94 | //
// connection.cpp
// ~~~~~~~~~~~~~~
//
// Copyright (c) 2003-2022 Christopher M. Kohlhoff (chris at kohlhoff dot com)
//
// Distributed under the Boost Software License, Version 1.0. (See accompanying
// file LICENSE_1_0.txt or copy at http://www.boost.org/LICENSE_1_0.txt)
//
#include "connection.hpp"
#include <uti... |
1c4cdc19caddfda8afc8a6a0f311db5156c84c02034905fa4f7b1cecb7b4b8bc | C++ | 2,333 | 69 | //---------------------------------------------------------------------------//
// Copyright (c) 2013-2014 Kyle Lutz <kyle.r.lutz@gmail.com>
//
// Distributed under the Boost Software License, Version 1.0
// See accompanying file LICENSE_1_0.txt or copy at
// http://www.boost.org/LICENSE_1_0.txt
//
// See http://boosto... |
69d6a3ee53dbb84c6acb8d1bd6fb0f9575459cceaf782a084d2457df39c4be3d | C++ | 2,333 | 76 | /*
Copyright (c) Alexander Zaitsev <zamazan4ik@gmail.com>, 2016
Distributed under the Boost Software License, Version 1.0. (See
accompanying file LICENSE_1_0.txt or copy at
http://www.boost.org/LICENSE_1_0.txt)
See http://www.boost.org/ for latest version.
*/
#include <boost/config.hpp>
#include <boost/alg... |
49586e4688808ddad901f44dfdc9ed16cdb40410147af50b9f461608e323f585 | C++ | 2,336 | 99 | //
// bind_noexcept_test.cpp
//
// Copyright 2017 Peter Dimov
//
// Distributed under the Boost Software License, Version 1.0.
// See accompanying file LICENSE_1_0.txt or copy at
// http://www.boost.org/LICENSE_1_0.txt)
//
#include <boost/bind/bind.hpp>
#include <boost/core/lightweight_test.hpp>
#include <boost/config... |
f4c8f58d3ddb77ff2e6e56377e0836bf9c5173d8e9e56c3f9523596f24cb61de | C++ | 2,336 | 86 | // Boost.Bimap
//
// Copyright (c) 2006-2007 Matias Capeletto
//
// Distributed under the Boost Software License, Version 1.0.
// (See accompanying file LICENSE_1_0.txt or copy at
// http://www.boost.org/LICENSE_1_0.txt)
// VC++ 8.0 warns on usage of certain Standard Library and API functions that
// can be cause bu... |
46cebc93521d5ce8249c808a8f8195d95360858653f096edf59ec0ebda1efed9 | C++ | 2,347 | 104 |
//g++ -O3 -g0 -DNDEBUG sparse_transpose.cpp -I.. -I/home/gael/Coding/LinearAlgebra/mtl4/ -DDENSITY=0.005 -DSIZE=10000 && ./a.out
// -DNOGMM -DNOMTL
// -DCSPARSE -I /home/gael/Coding/LinearAlgebra/CSparse/Include/ /home/gael/Coding/LinearAlgebra/CSparse/Lib/libcsparse.a
#ifndef SIZE
#define SIZE 10000
#endif
#ifndef... |
c201ac7feb5d8d855e329f21a951efd43210e84bc523dd9dd05a0077f88e8fbd | C++ | 2,351 | 79 | // Boost.Bimap
//
// Copyright (c) 2006-2007 Matias Capeletto
//
// Distributed under the Boost Software License, Version 1.0.
// (See accompanying file LICENSE_1_0.txt or copy at
// http://www.boost.org/LICENSE_1_0.txt)
// VC++ 8.0 warns on usage of certain Standard Library and API functions that
// can be cause bu... |
57edf62b1edf7d0bb0eac17624959d1c2aef888e8d2cfcdd81c9e431c60fc2fe | C++ | 2,354 | 93 | // Boost.Bimap
//
// Copyright (c) 2006-2007 Matias Capeletto
//
// Distributed under the Boost Software License, Version 1.0.
// (See accompanying file LICENSE_1_0.txt or copy at
// http://www.boost.org/LICENSE_1_0.txt)
// VC++ 8.0 warns on usage of certain Standard Library and API functions that
// can be cause bu... |
3261da67c40a8700c07df35e03a08cc42914c9a58a5ae8f307d7b2e1455bb975 | C++ | 2,356 | 52 | // BSD 3-Clause License
//
// Copyright (c) 2019, Karan Aggarwal (karan@iisc.ac.in)
// All rights reserved.
//
// Redistribution and use in source and binary forms, with or without
// modification, are permitted provided that the following conditions are met:
//
// 1. Redistributions of source code must retain the a... |
adc5aa665b280e5fdc92a749a8ccfd3da755cf0d940a597c5fb5d7ce502e6e7c | C++ | 2,358 | 58 | // This file is part of Eigen, a lightweight C++ template library
// for linear algebra. Eigen itself is part of the KDE project.
//
// Copyright (C) 2006-2008 Benoit Jacob <jacob.benoit.1@gmail.com>
//
// Eigen is free software; you can redistribute it and/or
// modify it under the terms of the GNU Lesser General Publ... |
6d5e9b35ae0ab3454093f1957884c6cd1119fe3731a46c46932b29a2a375396f | C++ | 2,359 | 83 |
#include <boost/property_map.hpp>
namespace yasmic {
namespace impl {
template <typename Index, typename EdgeIndex>
class simple_csr_edge {
public:
Index r;
EdgeIndex i;
simple_csr_edge(Index row, EdgeIndex ind) : r(row), i(ind) {}
sim... |
0c7573e1103bb39cc4e3f2017bdf419f9a0ff97499d08e54ecb809055009a711 | C++ | 2,361 | 74 | //---------------------------------------------------------------------------//
// Copyright (c) 2013-2014 Kyle Lutz <kyle.r.lutz@gmail.com>
//
// Distributed under the Boost Software License, Version 1.0
// See accompanying file LICENSE_1_0.txt or copy at
// http://www.boost.org/LICENSE_1_0.txt
//
// See http://boosto... |
954cce2d685e05cb53bee9d783b926bfbf2202903c5f26e3894207e26ecd9034 | C++ | 2,361 | 69 | // This file is part of Eigen, a lightweight C++ template library
// for linear algebra.
//
// Copyright (C) 2008-2009 Gael Guennebaud <gael.guennebaud@inria.fr>
//
// Eigen is free software; you can redistribute it and/or
// modify it under the terms of the GNU Lesser General Public
// License as published by the Free... |
c424097909a3a2ce5b9eda4a9f242a376e1799cd9803281892c9e93f9d7091d7 | C++ | 2,364 | 84 | //
// Copyright (c) 2016-2019 Vinnie Falco (vinnie dot falco at gmail dot com)
//
// Distributed under the Boost Software License, Version 1.0. (See accompanying
// file LICENSE_1_0.txt or copy at http://www.boost.org/LICENSE_1_0.txt)
//
// Official repository: https://github.com/boostorg/beast
//
#include <boost/beas... |
ee1b6af511e699dec3cc7e4330e2f9c6fd16cc4f0e0f542179993fb7cb6d222d | C++ | 2,366 | 97 | // Boost.Bimap
//
// Copyright (c) 2006-2007 Matias Capeletto
//
// Distributed under the Boost Software License, Version 1.0.
// (See accompanying file LICENSE_1_0.txt or copy at
// http://www.boost.org/LICENSE_1_0.txt)
// VC++ 8.0 warns on usage of certain Standard Library and API functions that
// can be cause bu... |
42976a17cd3a8ff39f7df0d05804588829f62e25372f4a778115f74b4a198fab | C++ | 2,370 | 112 | //
// coroutine.cpp
// ~~~~~~~~~~~~~
//
// Copyright (c) 2003-2022 Christopher M. Kohlhoff (chris at kohlhoff dot com)
//
// Distributed under the Boost Software License, Version 1.0. (See accompanying
// file LICENSE_1_0.txt or copy at http://www.boost.org/LICENSE_1_0.txt)
//
// Disable autolinking for unit tests.
#i... |
dc77c2ed9c97f6bed647fda1f091f0f47f0fb742017fdfc687e69320b0fe58c2 | C++ | 2,371 | 80 | #include "time_postprocessor.h"
#include <loguru.hpp>
#include <random>
#include <thread>
// include loguru before catch
#include <catch2/catch.hpp>
// clazy:excludeall=non-pod-global-static
template <std::size_t N>
inline void test_postproc_array(
lsl::time_postprocessor &pp, const double (&in)[N], const double (&e... |
8fe5a33b5644e6a23495c8cb018ac7080e434edd1a41e283e28332a49663cede | C++ | 2,373 | 76 | //===----------------------------------------------------------------------===//
//
// The LLVM Compiler Infrastructure
//
// This file is dual licensed under the MIT and the University of Illinois Open
// Source Licenses. See LICENSE.TXT for details.
//
//===----------------------------------------... |
5d6c2d306c1fe3ce7eba8c340dc1d6a123b9e49d962e6749482588a72f004795 | C++ | 2,377 | 85 |
#include <boost/property_map.hpp>
namespace yasmic {
namespace impl {
template <typename Index, typename EdgeIndex>
class simple_csr_edge {
public:
Index r;
EdgeIndex i;
simple_csr_edge(Index row, EdgeIndex ind) : r(row), i(ind) {}
sim... |
aaa16e25b61db3f312dd8cf52c1fae313cf8e5bcceb34d06307ac09cb32417c5 | C++ | 2,386 | 115 | // Boost.Assign library
//
// Copyright Thorsten Ottosen 2003-2004. Use, modification and
// distribution is subject to the Boost Software License, Version
// 1.0. (See accompanying file LICENSE_1_0.txt or copy at
// http://www.boost.org/LICENSE_1_0.txt)
//
// For more information, see http://www.boost.org/libs/ass... |
13c2d5693b12b4a7b3bc3d9e961bdf869e1312974f1e320e3f9aabe788ecd0df | C++ | 2,388 | 68 | //
// Copyright (c) 2016-2019 Vinnie Falco (vinnie dot falco at gmail dot com)
//
// Distributed under the Boost Software License, Version 1.0. (See accompanying
// file LICENSE_1_0.txt or copy at http://www.boost.org/LICENSE_1_0.txt)
//
// Official repository: https://github.com/boostorg/beast
//
// Test that header ... |
2fbb545615ce71e6c88343697e496173ba4d9dc830c7632aceedd68b3f3876c6 | C++ | 2,392 | 111 | //
// registered_buffer.cpp
// ~~~~~~~~~~~~~~~~~~~~~
//
// Copyright (c) 2003-2022 Christopher M. Kohlhoff (chris at kohlhoff dot com)
//
// Distributed under the Boost Software License, Version 1.0. (See accompanying
// file LICENSE_1_0.txt or copy at http://www.boost.org/LICENSE_1_0.txt)
//
// Disable autolinking fo... |
5984fcab7743aebb2e1c3a79c650d61ab7477a6b824ef1b6d8132338f92912ae | C++ | 2,395 | 78 | #include "ParametersClip.h"
#include "Parameters.h"
#include "SequenceFuns.h"
uint32 ClipMate::clip(uint &Lread, char *seqNum)
{
clippedN=0;
if (type<0)
return 0; //no clip for this mate
uint LreadOld=Lread;
if (N>0) {//clip N bases
if (Lread>N) {
Lread -= N; // for 3p this is all
clippedN += N;
if... |
aeb33a4156d7776007ea7ced7e931b650b7bf1b20fade10b96f926bf58fa3e06 | C++ | 2,396 | 70 | // (C) Copyright 2006 Eric Niebler, Olivier Gygi.
// Use, modification and distribution are subject to the
// Boost Software License, Version 1.0. (See accompanying file
// LICENSE_1_0.txt or copy at http://www.boost.org/LICENSE_1_0.txt)
// Test case for weighted_kurtosis.hpp
#include <boost/random.hpp>
#include ... |
5e0b92697c5ea50bc2cb5afa259b68e670b78643e6e18786cc904de5b3870a8c | C++ | 2,397 | 53 | #include <unsupported/Eigen/Polynomials>
#include <vector>
#include <iostream>
using namespace Eigen;
using namespace std;
int main()
{
typedef Matrix<double,5,1> Vector5d;
Vector5d roots = Vector5d::Random();
cout << "Roots: " << roots.transpose() << endl;
Eigen::Matrix<double,6,1> polynomial;
roots_to_mo... |
4f2bf649d6247a4fd61887222f03fad2a50d4fb0d5dba79668e465b868fea074 | C++ | 2,399 | 78 | // Copyright (c) 2020 Andrey Semashev
//
// Distributed under the Boost Software License, Version 1.0.
// See accompanying file LICENSE_1_0.txt or copy at
// http://www.boost.org/LICENSE_1_0.txt)
// This is a fuzzing test for waiting and notifying operations.
// The test creates a number of threads exceeding the n... |
5a8f5811a7966be69d7a71f692b964e6faf5f1422fe773a2a8ae6fca0bebebaf | C++ | 2,399 | 92 | //
// Copyright (c) 2016-2019 Vinnie Falco (vinnie dot falco at gmail dot com)
//
// Distributed under the Boost Software License, Version 1.0. (See accompanying
// file LICENSE_1_0.txt or copy at http://www.boost.org/LICENSE_1_0.txt)
//
// Official repository: https://github.com/boostorg/beast
//
// Test that header ... |
3f76b4315f0a102f65bba9f7301b7c40a436aad014a2454665c4459696c4b925 | C++ | 2,402 | 57 | // This file is part of Eigen, a lightweight C++ template library
// for linear algebra.
//
// Copyright (C) 2011 Gael Guennebaud <g.gael@free.fr>
//
// Eigen is free software; you can redistribute it and/or
// modify it under the terms of the GNU Lesser General Public
// License as published by the Free Software Found... |
17a878199f0426458a10e2b6ee8e002e224ed185d5fb0800db3634bad6a1ea34 | C++ | 2,404 | 59 | //===----------------------------------------------------------------------===//
//
// The LLVM Compiler Infrastructure
//
// This file is dual licensed under the MIT and the University of Illinois Open
// Source Licenses. See LICENSE.TXT for details.
//
//===----------------------------------------... |
1267148a7ba61ab36a6b4b3612bbdf3ced2923248297f7327095cee8be13b100 | C++ | 2,407 | 60 | // This file is part of Eigen, a lightweight C++ template library
// for linear algebra. Eigen itself is part of the KDE project.
//
// Copyright (C) 2006-2008 Benoit Jacob <jacob.benoit.1@gmail.com>
//
// Eigen is free software; you can redistribute it and/or
// modify it under the terms of the GNU Lesser General Publ... |
b1d8aadd8b25601c7c70d9dcc2825b00391e87a734075f0617ed088677b0aa83 | C++ | 2,409 | 86 | //
// parallel_grep.cpp
// ~~~~~~~~~~~~~~~~~
//
// Copyright (c) 2003-2022 Christopher M. Kohlhoff (chris at kohlhoff dot com)
//
// Distributed under the Boost Software License, Version 1.0. (See accompanying
// file LICENSE_1_0.txt or copy at http://www.boost.org/LICENSE_1_0.txt)
//
#include <boost/asio/detached.hpp... |
5ddd804af0ffa9b70838c8b81ad9c88852b5570e98356c14849a8db64e28d89a | C++ | 2,413 | 79 | #include <iostream>
#include <lsl_cpp.h>
#include <string>
#include <thread>
/**
* Example program that demonstrates how to resolve a specific stream on the lab
* network and how to connect to it in order to receive data.
*/
void printChunk(const std::vector<float> &chunk, std::size_t n_channels) {
for (std::siz... |
a1f5c0ab1ebdffe032623aa85334f334e5eca113160a50592b5aa8a56c23ce6b | C++ | 2,413 | 90 | // Boost.Bimap
//
// Copyright (c) 2006-2007 Matias Capeletto
//
// Distributed under the Boost Software License, Version 1.0.
// (See accompanying file LICENSE_1_0.txt or copy at
// http://www.boost.org/LICENSE_1_0.txt)
// Boost.Bimap Example
//------------------------------------------------------------------------... |
f99c277e9f82b759cccd432900820a3bd055f35e70686f01f731dd0d19c25340 | C++ | 2,415 | 92 | //
// async_udp_echo_server.cpp
// ~~~~~~~~~~~~~~~~~~~~~~~~~
//
// Copyright (c) 2003-2022 Christopher M. Kohlhoff (chris at kohlhoff dot com)
//
// Distributed under the Boost Software License, Version 1.0. (See accompanying
// file LICENSE_1_0.txt or copy at http://www.boost.org/LICENSE_1_0.txt)
//
#include <cstdlib... |
51bb547f6ec7097f7c9e84bbdb287ca28f2abe221d124f232f0d0d742736ad73 | C++ | 2,421 | 80 | #include "common.h"
#include "api_config.h"
#include <algorithm>
#include <cctype>
#include <chrono>
#include <cstdlib>
#include <loguru.hpp>
#ifdef _WIN32
#define WIN32_LEAN_AND_MEAN
#if defined(_MSC_VER) && _MSC_VER < 1900
#error "MSVC 2013's std::chrono isn't supported. Please upgrade to VS2015 or later"
#endif
#in... |
9fa889fc75148f9dc347fc723e55536a3a6da231c2289100a4a70f2b9b7550e3 | C++ | 2,422 | 77 | //---------------------------------------------------------------------------//
// Copyright (c) 2013-2014 Kyle Lutz <kyle.r.lutz@gmail.com>
//
// Distributed under the Boost Software License, Version 1.0
// See accompanying file LICENSE_1_0.txt or copy at
// http://www.boost.org/LICENSE_1_0.txt
//
// See http://boosto... |
e4950fff3ae8e839bfd52f30770087f9b5ab8d4de1834358aa637eb5ba830dee | C++ | 2,432 | 81 | #include <thread>
#include <iostream>
#include <lsl_cpp.h>
#include <string>
/**
* Example program that demonstrates how to resolve a specific stream on the lab
* network and how to connect to it in order to receive data.
*/
void printChunk(const std::vector<float>& chunk, std::size_t n_channels) {
for(std::size... |
074628ef4950e5d985b701aad6424de9d71ac720513a38638913478054dc4abe | C++ | 2,436 | 106 | // Boost.Assign library
//
// Copyright Thorsten Ottosen 2003-2006. Use, modification and
// distribution is subject to the Boost Software License, Version
// 1.0. (See accompanying file LICENSE_1_0.txt or copy at
// http://www.boost.org/LICENSE_1_0.txt)
//
// For more information, see http://www.boost.org/libs/ass... |
529392fed79ed536891d69d78af9c54193738e88f548ca5035e36ef16069db05 | C++ | 2,437 | 59 | // This file is part of Eigen, a lightweight C++ template library
// for linear algebra.
//
// Copyright (C) 2009 Gael Guennebaud <gael.guennebaud@inria.fr>
//
// Eigen is free software; you can redistribute it and/or
// modify it under the terms of the GNU Lesser General Public
// License as published by the Free Soft... |
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