sha256 stringlengths 64 64 | language stringclasses 27
values | size int32 1 491k | lines int32 1 21.8k | content stringlengths 1 200k |
|---|---|---|---|---|
3375b308aceeaa61e8de002e69467f0e3851f40cba2a2b43d279bbc0e483dc4c | C++ | 2,444 | 61 | //---------------------------------------------------------------------------//
// Copyright (c) 2013 Kyle Lutz <kyle.r.lutz@gmail.com>
//
// Distributed under the Boost Software License, Version 1.0
// See accompanying file LICENSE_1_0.txt or copy at
// http://www.boost.org/LICENSE_1_0.txt
//
// See http://boostorg.gi... |
b68bbafc236df0cf37f194c378c0d63d5c3859ef165c7188783cd31d2fb67a41 | C++ | 2,444 | 65 | /* Contact ythomas@csail.mit.edu or msabuncu@csail.mit.edu for bugs or questions */
/*=========================================================================
Copyright (c) 2008 Thomas Yeo and Mert Sabuncu
All rights reserved.
Redistribution and use in source and binary forms, with or without
modification, are ... |
12cc0bcacbdba3db3a67f2a672b7c9fa37ec969955c7140e41f31b3f32f20272 | C++ | 2,446 | 118 | //
// assert_msg_test2.cpp - a test for BOOST_ASSERT_MSG and NDEBUG
//
// Copyright (c) 2014 Peter Dimov
//
// Distributed under the Boost Software License, Version 1.0.
// See accompanying file LICENSE_1_0.txt or copy at
// http://www.boost.org/LICENSE_1_0.txt
//
#include <boost/detail/lightweight_test.hpp>
#inc... |
7cf487e07c3d27376c2cb8af33d02239b7966623875d37b7aa0259e927a9c2f6 | C++ | 2,448 | 57 | // Copyright 2006, Google Inc.
// All rights reserved.
//
// Redistribution and use in source and binary forms, with or without
// modification, are permitted provided that the following conditions are
// met:
//
// * Redistributions of source code must retain the above copyright
// notice, this list of conditions ... |
1e80f38ce33158922b725a830abdefa134bd3b0250963fd5a6fee97766da2212 | C++ | 2,449 | 99 | // Boost.Assign library
//
// Copyright Thorsten Ottosen 2003-2004. Use, modification and
// distribution is subject to the Boost Software License, Version
// 1.0. (See accompanying file LICENSE_1_0.txt or copy at
// http://www.boost.org/LICENSE_1_0.txt)
//
// For more information, see http://www.boost.org/libs/ass... |
9e27c05b79953220af5c4d3b0db962bc9b1907f8c4ef805055b28de7705986ca | C++ | 2,452 | 96 | //---------------------------------------------------------------------------//
// Copyright (c) 2013 Kyle Lutz <kyle.r.lutz@gmail.com>
//
// Distributed under the Boost Software License, Version 1.0
// See accompanying file LICENSE_1_0.txt or copy at
// http://www.boost.org/LICENSE_1_0.txt
//
// See http://boostorg.gi... |
d82d8b72914897232c2ff9fd091a7b0add68b7cf75f3f210d3a487ebeea84cfe | C++ | 2,456 | 85 | // Copyright 2006, Google Inc.
// All rights reserved.
//
// Redistribution and use in source and binary forms, with or without
// modification, are permitted provided that the following conditions are
// met:
//
// * Redistributions of source code must retain the above copyright
// notice, this list of conditions ... |
ec85814925658b89bf17b210c10bd88da2f11e0ec0394818eb61cf70df4708bf | C++ | 2,463 | 74 | // This file is part of Eigen, a lightweight C++ template library
// for linear algebra.
//
// Copyright (C) 2011 Benoit Jacob <jacob.benoit.1@gmail.com>
//
// Eigen is free software; you can redistribute it and/or
// modify it under the terms of the GNU Lesser General Public
// License as published by the Free Softwar... |
7ebd8d6489dbbb06b1e927998e4a85fe334cca8d1f840709f97ac22dc8a51d7b | C++ | 2,465 | 98 | //
// sender.cpp
// ~~~~~~~~~~
//
// Copyright (c) 2003-2022 Christopher M. Kohlhoff (chris at kohlhoff dot com)
//
// Distributed under the Boost Software License, Version 1.0. (See accompanying
// file LICENSE_1_0.txt or copy at http://www.boost.org/LICENSE_1_0.txt)
//
#include <iostream>
#include <sstream>
#include... |
d703604c2efe7cabbcbb74e87da9c81b65b2ba7ae9a0544423058ba01fe1c31b | C++ | 2,471 | 82 | // Boost.Bimap
//
// Copyright (c) 2006-2007 Matias Capeletto
//
// Distributed under the Boost Software License, Version 1.0.
// (See accompanying file LICENSE_1_0.txt or copy at
// http://www.boost.org/LICENSE_1_0.txt)
// VC++ 8.0 warns on usage of certain Standard Library and API functions that
// can be cause bu... |
23742e3af586286404eb7670b7e21dc4ba1327c56c787b1e4f8f5fd441dcafe9 | C++ | 2,476 | 84 | //
// Copyright (c) 2016-2019 Vinnie Falco (vinnie dot falco at gmail dot com)
//
// Distributed under the Boost Software License, Version 1.0. (See accompanying
// file LICENSE_1_0.txt or copy at http://www.boost.org/LICENSE_1_0.txt)
//
// Official repository: https://github.com/vinniefalco/CppCon2018
//
//----------... |
3f5155e7077199c0fa615e1e5fa41153b3229d8ad79c41331c51bb93904749d4 | C++ | 2,476 | 85 | // (C) Copyright Herve Bronnimann 2004.
// Use, modification and distribution are subject to the
// Boost Software License, Version 1.0. (See accompanying file
// LICENSE_1_0.txt or copy at http://www.boost.org/LICENSE_1_0.txt)
#include <utility>
#include <functional>
#include <boost/config.hpp>
#include <boost/a... |
9becc92747e1267e3e9b8cf396cd69e6fb1520d9c024c2a8f8373e8fd87d7822 | C++ | 2,478 | 113 | // Boost.Bimap
//
// Copyright (c) 2006-2007 Matias Capeletto
//
// Distributed under the Boost Software License, Version 1.0.
// (See accompanying file LICENSE_1_0.txt or copy at
// http://www.boost.org/LICENSE_1_0.txt)
// VC++ 8.0 warns on usage of certain Standard Library and API functions that
// can be cause bu... |
19bdb843f70f0cd5dba63e0935a1667cfa6dadc2f3e206973c75e5774cf20272 | C++ | 2,479 | 115 | // NpxExtractor.cpp : Defines the entry point for the console application.
//
#include "stdafx.h"
#include <iostream>
#include <stdlib.h>
#include "NpxExtractorPXI.h"
#include "NpxExtractor3a.h"
#include "JuceHeader.h"
#include <Windows.h>
#define NPXv1 0
#define NPXv2 1
int main(int argc, char* argv[])
{
const... |
77808dd6dfee6f60569fb7c31f0c402afbefe2417743091d2ec89b7c5c996fc3 | C++ | 2,481 | 72 | //---------------------------------------------------------------------------//
// Copyright (c) 2013-2014 Kyle Lutz <kyle.r.lutz@gmail.com>
//
// Distributed under the Boost Software License, Version 1.0
// See accompanying file LICENSE_1_0.txt or copy at
// http://www.boost.org/LICENSE_1_0.txt
//
// See http://boosto... |
5000ef8c8a035134b61eff9745f868f1b7d5c9d88800eda8cb41c3884be14445 | C++ | 2,483 | 75 | //---------------------------------------------------------------------------//
// Copyright (c) 2014 Roshan <thisisroshansmail@gmail.com>
//
// Distributed under the Boost Software License, Version 1.0
// See accompanying file LICENSE_1_0.txt or copy at
// http://www.boost.org/LICENSE_1_0.txt
//
// See http://boostorg... |
1aa080441241c4ceb59ed7893a2b7b020b47b85683e41ab18bc27a1df6d69213 | C++ | 2,484 | 93 | #include "IncludeDefine.h"
#include "Parameters.h"
#include "Transcript.h"
#include "extendAlign.h"
bool extendAlign( char* R, char* G, uint rStart, uint gStart, int dR, int dG, uint L, uint Lprev, uint nMMprev, uint nMMmax, double pMMmax, bool extendToEnd, Transcript* trA ) {
// find the maximum score
int iS,iG;
i... |
6f6cab06e016654ff813eed277ee2886c097156375f0cd79b5623dc432b61c19 | C++ | 2,485 | 74 | #include <chrono>
#include <iostream>
#include <lsl_cpp.h>
#include <stdint.h>
#include <thread>
int main(int argc, char **argv) {
std::cout << "ReceiveDataInChunks" << std::endl;
std::cout << "ReceiveDataInChunks StreamName max_buflen flush" << std::endl;
std::cout << "- max_buffered -- duration in sec (or x100 s... |
b2cb576f728a2b467600282c0dc9fa2d6ffb0dc044ec19103a1a3034210ee7e5 | C++ | 2,487 | 119 | //
// server.cpp
// ~~~~~~~~~~
//
// Copyright (c) 2003-2022 Christopher M. Kohlhoff (chris at kohlhoff dot com)
//
// Distributed under the Boost Software License, Version 1.0. (See accompanying
// file LICENSE_1_0.txt or copy at http://www.boost.org/LICENSE_1_0.txt)
//
#include <ctime>
#include <iostream>
#include <... |
b3b32ba19b041b9ea41781b5a61fd74bb26d192e2cb17d37d581ee821425456b | C++ | 2,490 | 94 | // Boost.Bimap
//
// Copyright (c) 2006-2007 Matias Capeletto
//
// Distributed under the Boost Software License, Version 1.0.
// (See accompanying file LICENSE_1_0.txt or copy at
// http://www.boost.org/LICENSE_1_0.txt)
// VC++ 8.0 warns on usage of certain Standard Library and API functions that
// can be cause bu... |
fe3b96eba6865159f6a1e0248854960bba2466f091d730251134fe1f349c9711 | C++ | 2,492 | 90 | // io_ex1.cpp ----------------------------------------------------------//
// Copyright 2010 Howard Hinnant
// Copyright 2010 Vicente J. Botet Escriba
// Distributed under the Boost Software License, Version 1.0.
// See http://www.boost.org/LICENSE_1_0.txt
/*
This code was adapted by Vicente J. Botet Escriba f... |
38c76b6966138b36177552769d91e8f42063b3c99d19c014b2b72e80372198ce | C++ | 2,493 | 75 | //---------------------------------------------------------------------------//
// Copyright (c) 2014 Roshan <thisisroshansmail@gmail.com>
//
// Distributed under the Boost Software License, Version 1.0
// See accompanying file LICENSE_1_0.txt or copy at
// http://www.boost.org/LICENSE_1_0.txt
//
// See http://boostorg... |
6a16ec6b3f1d90e88dc667a92859f25918a03e4f05c99a02cedd73f860bccc90 | C++ | 2,494 | 92 | // Copyright 2021 Peter Dimov
// Distributed under the Boost Software License, Version 1.0.
// https://www.boost.org/LICENSE_1_0.txt
#include<boost/bind/apply.hpp>
#include<boost/bind/bind.hpp>
#include <boost/core/lightweight_test.hpp>
#include <boost/config.hpp>
#include <boost/config/pragma_message.hpp>
#if define... |
7e648000f1b0fedd6a4728be5b8e3653553257f966b38d70421e19184b12addf | C++ | 2,497 | 64 | //=====================================================
// File : main.cpp
// Author : L. Plagne <laurent.plagne@edf.fr)>
// Copyright (C) EDF R&D, lun sep 30 14:23:28 CEST 2002
//=====================================================
//
// This program is free software; you can redistribute it and/or
// modify it ... |
81055274a7b091efb4fec3ecadb302c9136bdc214a5d9f3b198ef0d49f66df2b | C++ | 2,497 | 75 | //---------------------------------------------------------------------------//
// Copyright (c) 2014 Roshan <thisisroshansmail@gmail.com>
//
// Distributed under the Boost Software License, Version 1.0
// See accompanying file LICENSE_1_0.txt or copy at
// http://www.boost.org/LICENSE_1_0.txt
//
// See http://boostorg... |
1c54b0f781ee1fbe2f4b2d3971f1886fb949c7eb206e740c10947c09794d0e3e | C++ | 2,498 | 94 | //
// daytime_client.cpp
// ~~~~~~~~~~~~~~~~~~
//
// Copyright (c) 2003-2022 Christopher M. Kohlhoff (chris at kohlhoff dot com)
//
// Distributed under the Boost Software License, Version 1.0. (See accompanying
// file LICENSE_1_0.txt or copy at http://www.boost.org/LICENSE_1_0.txt)
//
#include <array>
#include <futu... |
d048186d0fec5bc91acd4aeae17177e7a505af80c407522f0c1050e6d803b408 | C++ | 2,499 | 73 | //---------------------------------------------------------------------------//
// Copyright (c) 2013 Kyle Lutz <kyle.r.lutz@gmail.com>
//
// Distributed under the Boost Software License, Version 1.0
// See accompanying file LICENSE_1_0.txt or copy at
// http://www.boost.org/LICENSE_1_0.txt
//
// See http://boostorg.gi... |
dc106c5940d87bb4bbef3d77815eab642ee173a3340b2b9c532b5c711c4c2d0e | C++ | 2,502 | 68 | // Copyright 2005, Google Inc.
// All rights reserved.
//
// Redistribution and use in source and binary forms, with or without
// modification, are permitted provided that the following conditions are
// met:
//
// * Redistributions of source code must retain the above copyright
// notice, this list of conditions ... |
2357e54bc071945a03571dc2978a2407220a8e398f356572417770892bc56e53 | C++ | 2,509 | 99 | //
// bind_no_placeholders_test.cpp - test for BOOST_BIND_NO_PLACEHOLDERS
//
// Copyright (c) 2001, 2002 Peter Dimov and Multi Media Ltd.
// Copyright (c) 2001 David Abrahams
// Copyright (c) 2015 Peter Dimov
//
// Distributed under the Boost Software License, Version 1.0.
// See accompanying file LICENSE_1_0.txt... |
7918eb7b62d7ee085153e88be2545a45d284319662dc5063dd911b0e42655d71 | C++ | 2,509 | 88 | #include "umiprocessor.h"
UmiProcessor::UmiProcessor(Options* opt){
mOptions = opt;
}
UmiProcessor::~UmiProcessor(){
}
void UmiProcessor::process(Read* r1, Read* r2) {
if(!mOptions->umi.enabled)
return;
string umi;
if(mOptions->umi.location == UMI_LOC_INDEX1)
umi = r1->firstIndex();... |
75051077e5d786c7e31984832f75a8f5b07d446dd476c779e5d5e1febc5b9d53 | C++ | 2,513 | 75 | //---------------------------------------------------------------------------//
// Copyright (c) 2014 Roshan <thisisroshansmail@gmail.com>
//
// Distributed under the Boost Software License, Version 1.0
// See accompanying file LICENSE_1_0.txt or copy at
// http://www.boost.org/LICENSE_1_0.txt
//
// See http://boostorg... |
b806370ea0859d6693609326b849de33d160bfafa3d7195743f6593b05839554 | C++ | 2,518 | 118 | // To use the simple FFT implementation
// g++ -o demofft -I.. -Wall -O3 FFT.cpp
// To use the FFTW implementation
// g++ -o demofft -I.. -DUSE_FFTW -Wall -O3 FFT.cpp -lfftw3 -lfftw3f -lfftw3l
#ifdef USE_FFTW
#include <fftw3.h>
#endif
#include <vector>
#include <complex>
#include <algorithm>
#include <iterator>... |
6130edc4917d8deadb7882c9ee6c359b3fc3038d432e3ddc0eaccb2469df39a7 | C++ | 2,519 | 71 | //---------------------------------------------------------------------------//
// Copyright (c) 2013-2014 Kyle Lutz <kyle.r.lutz@gmail.com>
//
// Distributed under the Boost Software License, Version 1.0
// See accompanying file LICENSE_1_0.txt or copy at
// http://www.boost.org/LICENSE_1_0.txt
//
// See http://boosto... |
c3cc755ecf5c49e350e007385b3348c0171c371a04ea99fe0a1f2a520f884a86 | C++ | 2,525 | 74 | // This file is part of Eigen, a lightweight C++ template library
// for linear algebra.
//
// Copyright (C) 2008 Gael Guennebaud <gael.guennebaud@inria.fr>
//
// Eigen is free software; you can redistribute it and/or
// modify it under the terms of the GNU Lesser General Public
// License as published by the Free Soft... |
8f16e099e6e0cf693d06f35c576bf1592492d230f7ac7650f334b0a6886612d6 | C++ | 2,530 | 64 | // This file is part of Eigen, a lightweight C++ template library
// for linear algebra.
//
// Copyright (C) 2009 Benoit Jacob <jacob.benoit.1@gmail.com>
//
// Eigen is free software; you can redistribute it and/or
// modify it under the terms of the GNU Lesser General Public
// License as published by the Free Softwar... |
611754d7e77b3be8417580b4130af71b8985b78c7901fed41d6ffaf645f88ab3 | C++ | 2,531 | 81 | /*
Copyright (c) Marshall Clow 2010-2012.
Distributed under the Boost Software License, Version 1.0. (See accompanying
file LICENSE_1_0.txt or copy at http://www.boost.org/LICENSE_1_0.txt)
For more information, see http://www.boost.org
*/
#include <string>
#include <boost/algorithm/searching/boyer_moo... |
0b95f86176517a5c0752a2c983919510ea0c2654b406f3ed94d5208801142b9a | C++ | 2,532 | 121 | //
// stream_server.cpp
// ~~~~~~~~~~~~~~~~~
//
// Copyright (c) 2003-2022 Christopher M. Kohlhoff (chris at kohlhoff dot com)
//
// Distributed under the Boost Software License, Version 1.0. (See accompanying
// file LICENSE_1_0.txt or copy at http://www.boost.org/LICENSE_1_0.txt)
//
#include <array>
#include <cstdio... |
1073f434781a7b4106415720359d7656a05bb0e214b9c218e4224e8c6ef095d4 | C++ | 2,535 | 139 | #include <boost/config.hpp>
#if defined(BOOST_MSVC)
#pragma warning(disable: 4786) // identifier truncated in debug info
#pragma warning(disable: 4710) // function not inlined
#pragma warning(disable: 4711) // function selected for automatic inline expansion
#pragma warning(disable: 4514) // unreferenced inline re... |
be153dd50bff1cab30a46ae3c9e965ef31b2127cabf8ad97be8c3227f75ecdc6 | C++ | 2,537 | 69 | #include "helper_type.hpp"
#include "helpers.h"
#include <atomic>
#include <catch2/catch.hpp>
#include <list>
#include <lsl_cpp.h>
#include <string>
#include <thread>
template<typename T>
struct sample_value {};
template<> struct sample_value<char> { static constexpr char val = 122; };
template<> struct sample_value<i... |
6ebbc27917b6858c7bf9bc528683106177c09e6ff818cd4941754e12daca9980 | C++ | 2,539 | 98 | // Boost.Assign library
//
// Copyright Thorsten Ottosen 2003-2004. Use, modification and
// distribution is subject to the Boost Software License, Version
// 1.0. (See accompanying file LICENSE_1_0.txt or copy at
// http://www.boost.org/LICENSE_1_0.txt)
//
// For more information, see http://www.boost.org/libs/ass... |
7aebd919008e99e6ed500ec76db1fae1246d219f2de1fb7577ad23b496f6ca25 | C++ | 2,542 | 90 | //
// server.cpp
// ~~~~~~~~~~
//
// Copyright (c) 2003-2022 Christopher M. Kohlhoff (chris at kohlhoff dot com)
//
// Distributed under the Boost Software License, Version 1.0. (See accompanying
// file LICENSE_1_0.txt or copy at http://www.boost.org/LICENSE_1_0.txt)
//
#include "server.hpp"
#include <boost/thread/th... |
f8cbf75d8bf9e9ae068a17ff968434c3aec7b7f1137c994d8f14af1a84361aa9 | C++ | 2,542 | 56 | // Copyright 2009, Google Inc.
// All rights reserved.
//
// Redistribution and use in source and binary forms, with or without
// modification, are permitted provided that the following conditions are
// met:
//
// * Redistributions of source code must retain the above copyright
// notice, this list of conditions ... |
6cc79d3876c481fd0e00d6c7874b7f39bf7d581eb925e721877ed8b87c1c773e | C++ | 2,543 | 94 | //---------------------------------------------------------------------------//
// Copyright (c) 2013-2014 Kyle Lutz <kyle.r.lutz@gmail.com>
//
// Distributed under the Boost Software License, Version 1.0
// See accompanying file LICENSE_1_0.txt or copy at
// http://www.boost.org/LICENSE_1_0.txt
//
// See http://boosto... |
fadb6dabc6c1cce1149145227d1e7b5802b0b51a17ffbf77a390b4aadd3ca634 | C++ | 2,544 | 62 | #include <Eigen/Array>
int main(int argc, char *argv[])
{
std::cout.precision(2);
// demo static functions
Eigen::Matrix3f m3 = Eigen::Matrix3f::Random();
Eigen::Matrix4f m4 = Eigen::Matrix4f::Identity();
std::cout << "*** Step 1 ***\nm3:\n" << m3 << "\nm4:\n" << m4 << std::endl;
// demo non-static set.... |
4cf1c18787fb4825faa8cefe46b89c155a800304c2171b36c9e38f76533d6cec | C++ | 2,547 | 65 | // Copyright (c) 2020-2021 Andrey Semashev
//
// Distributed under the Boost Software License, Version 1.0.
// See accompanying file LICENSE_1_0.txt or copy at
// http://www.boost.org/LICENSE_1_0.txt)
#include <boost/atomic/ipc_atomic_ref.hpp>
#include <boost/memory_order.hpp>
#include <boost/config.hpp>
#include... |
8f81d31345c4a790114152f2be7bb85cc4b575ce40f2808760e4a097841fe871 | C++ | 2,547 | 114 | //
// tcp_server.cpp
// ~~~~~~~~~~~~~~
//
// Copyright (c) 2003-2022 Christopher M. Kohlhoff (chris at kohlhoff dot com)
//
// Distributed under the Boost Software License, Version 1.0. (See accompanying
// file LICENSE_1_0.txt or copy at http://www.boost.org/LICENSE_1_0.txt)
//
#include <boost/asio/io_context.hpp>
#i... |
9de7b81f3bd5250ea502c139605920a7b5b32d2aa0c1e85363a57e6af1e8d072 | C++ | 2,548 | 86 | // Boost.Bimap
//
// Copyright (c) 2006-2007 Matias Capeletto
//
// Distributed under the Boost Software License, Version 1.0.
// (See accompanying file LICENSE_1_0.txt or copy at
// http://www.boost.org/LICENSE_1_0.txt)
// VC++ 8.0 warns on usage of certain Standard Library and API functions that
// can be cause bu... |
ab4e5cf36183644f51f9dab52bf3a2fc4e01fadf836e60c543cbdfa4ae948b1e | C++ | 2,548 | 122 | //
// reference_counted.cpp
// ~~~~~~~~~~~~~~~~~~~~~
//
// Copyright (c) 2003-2022 Christopher M. Kohlhoff (chris at kohlhoff dot com)
//
// Distributed under the Boost Software License, Version 1.0. (See accompanying
// file LICENSE_1_0.txt or copy at http://www.boost.org/LICENSE_1_0.txt)
//
#include <boost/asio.hpp>... |
cfa4abc9c1c7160f009166b4b3b0aaea2b4709b54189c44e8ce2f9da18f9391e | C++ | 2,548 | 70 | #include "../common/create_streampair.hpp"
#include "../common/lsltypes.hpp"
#include <atomic>
#include <catch2/catch.hpp>
#include <list>
#include <lsl_cpp.h>
#include <string>
#include <thread>
// clazy:excludeall=non-pod-global-static
template <typename T> struct sample_value { static const T val; };
template <> c... |
698c978a1cb208c69d17c1ab593843eaa278df7d492f47cc9716716fb1c2074e | C++ | 2,549 | 74 | // This file is part of Eigen, a lightweight C++ template library
// for linear algebra. Eigen itself is part of the KDE project.
//
// Copyright (C) 2008 Gael Guennebaud <g.gael@free.fr>
//
// Eigen is free software; you can redistribute it and/or
// modify it under the terms of the GNU Lesser General Public
// Licens... |
eedc4249057ca177bb75944c95596f42dcd2f5a30eed5bdd23db182696ee2911 | C++ | 2,550 | 61 | #include "annotate_intervals.h"
#include <vector>
#include <set>
#include <cstring>
#include <limits>
#include "intervaltree/IntervalTree.h"
#include "boost/icl/interval_map.hpp"
#include "bgmg_log.h"
int64_t annotate_intervals(int num_snp, int64_t* posvec, int num_interval, int64_t *interval_start, int64_t* interva... |
1ccbbb9906165f35558f70f5ea49abc03d8fc3da38f89829473398b3990726b2 | C++ | 2,551 | 64 | // This file is part of Eigen, a lightweight C++ template library
// for linear algebra.
//
// Copyright (C) 2009 Benoit Jacob <jacob.benoit.1@gmail.com>
//
// Eigen is free software; you can redistribute it and/or
// modify it under the terms of the GNU Lesser General Public
// License as published by the Free Softwar... |
0ee382bf0893fa90e0f3aa6b3f650ac6cfc1f0e46b05bf7a6ecf19115d6c7e09 | C++ | 2,553 | 108 | // Boost.Bimap
//
// Copyright (c) 2006-2007 Matias Capeletto
//
// Distributed under the Boost Software License, Version 1.0.
// (See accompanying file LICENSE_1_0.txt or copy at
// http://www.boost.org/LICENSE_1_0.txt)
// VC++ 8.0 warns on usage of certain Standard Library and API functions that
// can be cause bu... |
cc55efa9b00b9b8b2079466d3f2be6f0c327228d6ae7f8ceeaa114c526ec2e75 | C++ | 2,563 | 86 | //---------------------------------------------------------------------------//
// Copyright (c) 2016 Jakub Szuppe <j.szuppe@gmail.com>
//
// Distributed under the Boost Software License, Version 1.0
// See accompanying file LICENSE_1_0.txt or copy at
// http://www.boost.org/LICENSE_1_0.txt
//
// See http://boostorg.gi... |
bcd1d502a1c60a3abe74df0d860d667778b2af878f60d557965328ff532d3833 | C++ | 2,566 | 63 | #include "Transcript.h"
#include "SequenceFuns.h"
string Transcript::generateCigarP()
{//generates CIGARp string for the transcript with "p" operation for PE reads
//p is a special CIGAR operation to encode gap between mates. This gap is negative for overlapping mates.
string CIGAR;
stringstream samStreamCIG... |
7194d2ee1aba35e58991a6eb767631076ebaa6f74c90c88f3cbfce3d3cc8018e | C++ | 2,567 | 95 | //
// Copyright (c) 2016-2019 Vinnie Falco (vinnie dot falco at gmail dot com)
//
// Distributed under the Boost Software License, Version 1.0. (See accompanying
// file LICENSE_1_0.txt or copy at http://www.boost.org/LICENSE_1_0.txt)
//
// Official repository: https://github.com/boostorg/beast
//
// Test that header ... |
568b0649a81fda433e581a20699a079ebb440ae700f76ed3b5008c51deb7851c | C++ | 2,570 | 69 | // (C) Copyright 2006 Eric Niebler, Olivier Gygi
// Use, modification and distribution are subject to the
// Boost Software License, Version 1.0. (See accompanying file
// LICENSE_1_0.txt or copy at http://www.boost.org/LICENSE_1_0.txt)
#include <boost/test/unit_test.hpp>
#include <boost/test/tools/floating_point_... |
f26c023a1dc304685bf684e38ef27012e8d7ddbcecd498c9001bf0865b032ce1 | C++ | 2,574 | 100 | //---------------------------------------------------------------------------//
// Copyright (c) 2013 Kyle Lutz <kyle.r.lutz@gmail.com>
//
// Distributed under the Boost Software License, Version 1.0
// See accompanying file LICENSE_1_0.txt or copy at
// http://www.boost.org/LICENSE_1_0.txt
//
// See http://boostorg.gi... |
f2b790ec7dfd43f972a1d4407736e1ab19c29f013c2a3f84e883497cefbd7e2b | C++ | 2,577 | 108 | //
// assert_is_void_test.cpp - tests BOOST_ASSERT_IS_VOID
//
// Copyright (c) 2015 Ion Gaztanaga
//
// Distributed under the Boost Software License, Version 1.0.
// See accompanying file LICENSE_1_0.txt or copy at
// http://www.boost.org/LICENSE_1_0.txt
//
#include <boost/config.hpp>
// default case, !NDEBUG
// BO... |
ac37bf003a50f22fc0d0c09db8fdcaae41f9a3eca361b98802015fc8c103a3dc | C++ | 2,580 | 74 | // This file is part of Eigen, a lightweight C++ template library
// for linear algebra.
//
// Copyright (C) 2009 Gael Guennebaud <g.gael@free.fr>
//
// Eigen is free software; you can redistribute it and/or
// modify it under the terms of the GNU Lesser General Public
// License as published by the Free Software Found... |
fcc83253ca9dad8e115e8e55c2b96180c8a000d1d261d12f3eb3b7e2d6c6e7a2 | C++ | 2,582 | 79 | // min_time_point.cpp ----------------------------------------------------------//
// Copyright 2008 Howard Hinnant
// Copyright 2008 Beman Dawes
// Copyright 2009 Vicente J. Botet Escriba
// Distributed under the Boost Software License, Version 1.0.
// See http://www.boost.org/LICENSE_1_0.txt
/*
This code wa... |
cb25949ea5f7199baf799c3c30b718686b157c6d9cf4c5e7433df821841d1a14 | C++ | 2,585 | 95 | #include <OneWire.h>
#include <DallasTemperature.h>
//28FF6C4C6D140489
/********************************************************
* PID Basic Example
* Reading analog input 0 to control analog PWM output 3
********************************************************/
#include <PID_v1.h>
#define PIN_INPUT 0
... |
284c4ce54742277366763522f085c1aa6b9fae95c6313e499742cdc815302c8c | C++ | 2,592 | 91 | //
// http_client.cpp
// ~~~~~~~~~~~~~~~
//
// Copyright (c) 2003-2022 Christopher M. Kohlhoff (chris at kohlhoff dot com)
//
// Distributed under the Boost Software License, Version 1.0. (See accompanying
// file LICENSE_1_0.txt or copy at http://www.boost.org/LICENSE_1_0.txt)
//
#include <iostream>
#include <istream... |
5445b4971136e9047cf0c08b85a34057ce08fde1b559d559b7e0f7c6a849c442 | C++ | 2,593 | 89 | // Boost.Bimap
//
// Copyright (c) 2006-2007 Matias Capeletto
//
// Distributed under the Boost Software License, Version 1.0.
// (See accompanying file LICENSE_1_0.txt or copy at
// http://www.boost.org/LICENSE_1_0.txt)
// VC++ 8.0 warns on usage of certain Standard Library and API functions that
// can be cause bu... |
0609ac61f9e14cae331bf7694fd3845f7d637a2ad51b12a24a7e2d6314774c17 | C++ | 2,594 | 84 | /*
Copyright (c) Marshall Clow 2014.
Distributed under the Boost Software License, Version 1.0. (See accompanying
file LICENSE_1_0.txt or copy at http://www.boost.org/LICENSE_1_0.txt)
For more information, see http://www.boost.org
*/
#include <iostream>
#include <functional>
#include <boost/config.hpp... |
43e42849f3b04cb84e847f6afa9280b4aa27fef00dfe3ebeae57f319454125ff | C++ | 2,597 | 91 | //
// http_client.cpp
// ~~~~~~~~~~~~~~~
//
// Copyright (c) 2003-2022 Christopher M. Kohlhoff (chris at kohlhoff dot com)
//
// Distributed under the Boost Software License, Version 1.0. (See accompanying
// file LICENSE_1_0.txt or copy at http://www.boost.org/LICENSE_1_0.txt)
//
#include <iostream>
#include <istream... |
60c88589d487c26bf115281512b5564971f83ce030efb807a179fae2f06e3495 | C++ | 2,600 | 91 | //
// http_client.cpp
// ~~~~~~~~~~~~~~~
//
// Copyright (c) 2003-2022 Christopher M. Kohlhoff (chris at kohlhoff dot com)
//
// Distributed under the Boost Software License, Version 1.0. (See accompanying
// file LICENSE_1_0.txt or copy at http://www.boost.org/LICENSE_1_0.txt)
//
#include <iostream>
#include <istream... |
8652b4f8cef4c90ce479683e462dcc2e36699df0c97cc879a9f322afba35f4c5 | C++ | 2,603 | 66 | // This file is part of Eigen, a lightweight C++ template library
// for linear algebra.
//
// Copyright (C) 2009 Benoit Jacob <jacob.benoit.1@gmail.com>
//
// Eigen is free software; you can redistribute it and/or
// modify it under the terms of the GNU Lesser General Public
// License as published by the Free Softwar... |
22b11b06dfb5d38a870e43077570738f837984ba9a8b35698644ed91b3a1250a | C++ | 2,604 | 77 | /*
Copyright (c) Marshall Clow 2011-2012.
Distributed under the Boost Software License, Version 1.0. (See accompanying
file LICENSE_1_0.txt or copy at http://www.boost.org/LICENSE_1_0.txt)
For more information, see http://www.boost.org
*/
#include <iostream>
#include <boost/config.hpp>
#include <boost... |
bf481b24eb823c21969faaf1bbf11a8877f5d4ed8677a026fe836a20c10ce394 | C++ | 2,605 | 102 | // Boost.Bimap
//
// Copyright (c) 2006-2007 Matias Capeletto
//
// Distributed under the Boost Software License, Version 1.0.
// (See accompanying file LICENSE_1_0.txt or copy at
// http://www.boost.org/LICENSE_1_0.txt)
// VC++ 8.0 warns on usage of certain Standard Library and API functions that
// can be cause bu... |
ce9135bc1667d4f623ce3b773149fa5bd8b293da71487bd37051be33c511fe91 | C++ | 2,607 | 102 | //
// fd_passing_stream_client.cpp
// ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
//
// Copyright (c) 2003-2022 Christopher M. Kohlhoff (chris at kohlhoff dot com)
// Copyright (c) 2021 Heiko Hund (heiko at openvpn dot net)
//
// Distributed under the Boost Software License, Version 1.0. (See accompanying
// file LICENSE_1_0.txt or c... |
5e67c743c62501a818052fd4d8cc4f6fb09978f2ed9ee313bcd69c4ad57c7389 | C++ | 2,611 | 86 | // Boost.Bimap
//
// Copyright (c) 2006-2007 Matias Capeletto
//
// Distributed under the Boost Software License, Version 1.0.
// (See accompanying file LICENSE_1_0.txt or copy at
// http://www.boost.org/LICENSE_1_0.txt)
// VC++ 8.0 warns on usage of certain Standard Library and API functions that
// can be cause bu... |
f6cf4a3ae57f1547a040d23580abe1a13fd698ae43d24832f41ac579cc69d7e3 | C++ | 2,614 | 81 | // g++ -O3 -DNDEBUG -I.. -fopenmp benchOpenMP.cpp -o benchOpenMP && ./benchOpenMP 2> /dev/null
// icpc -fast -fno-exceptions -DNDEBUG -I.. -openmp benchOpenMP.cpp -o benchOpenMP && ./benchOpenMP 2> /dev/null
#include <omp.h>
#include "BenchUtil.h"
#include "basicbenchmark.h"
// #include <Eigen/Core>
// #include "Ben... |
8707a1a3a4c81bc379ee8d73812aa6f5fb343d5dfbc90c2f78f28e7197df8e27 | C++ | 2,617 | 94 | //
// parallel_grep.cpp
// ~~~~~~~~~~~~~~~~~
//
// Copyright (c) 2003-2022 Christopher M. Kohlhoff (chris at kohlhoff dot com)
//
// Distributed under the Boost Software License, Version 1.0. (See accompanying
// file LICENSE_1_0.txt or copy at http://www.boost.org/LICENSE_1_0.txt)
//
#include <boost/asio/detached.hpp... |
66a56122bb7a5670310266859f266cb1141cb79589a1ac254cd2074493e68195 | C++ | 2,618 | 80 | //---------------------------------------------------------------------------//
// Copyright (c) 2013-2014 Kyle Lutz <kyle.r.lutz@gmail.com>
//
// Distributed under the Boost Software License, Version 1.0
// See accompanying file LICENSE_1_0.txt or copy at
// http://www.boost.org/LICENSE_1_0.txt
//
// See http://boosto... |
345eb60958af8d288d33286ac12e23ff4ffaf6d9c7fadc723f9c9c6776c82cd0 | C++ | 2,619 | 67 | #include <boost/config.hpp>
#if defined(BOOST_MSVC)
#pragma warning(disable: 4786) // identifier truncated in debug info
#pragma warning(disable: 4710) // function not inlined
#pragma warning(disable: 4711) // function selected for automatic inline expansion
#pragma warning(disable: 4514) // unreferenced inline re... |
7eef9aff0e634b3cedf2a69e400f055d01e4ea645114fda772ab0c4704b87f28 | C++ | 2,619 | 54 | /*
Copyright (c) Marshall Clow 2010-2012.
Distributed under the Boost Software License, Version 1.0. (See accompanying
file LICENSE_1_0.txt or copy at http://www.boost.org/LICENSE_1_0.txt)
For more information, see http://www.boost.org
*/
#include <string>
#include <iostream> // for cout, etc
#inc... |
884c8666715b3ba0110fb1fab2951a70efbafc679738dbe5125faf5e22d03125 | C++ | 2,619 | 63 | // This file is part of Eigen, a lightweight C++ template library
// for linear algebra. Eigen itself is part of the KDE project.
//
// Copyright (C) 2006-2008 Benoit Jacob <jacob.benoit.1@gmail.com>
//
// Eigen is free software; you can redistribute it and/or
// modify it under the terms of the GNU Lesser General Publ... |
7221b7d131dc0afafd257e56f151a3279842bc7e24f93cb761570a95641be697 | C++ | 2,629 | 100 | // Boost.Bimap
//
// Copyright (c) 2006-2007 Matias Capeletto
//
// Distributed under the Boost Software License, Version 1.0.
// (See accompanying file LICENSE_1_0.txt or copy at
// http://www.boost.org/LICENSE_1_0.txt)
/*****************************************************************************
Boost.MultiIndex
*... |
10451cf0f4aa073268a3acba93717564a7bab7222b07a895f2d5f1fdc00af171 | C++ | 2,631 | 69 | // BSD 3-Clause License
//
// Copyright (c) 2019, Karan Aggarwal (karan@iisc.ac.in)
// All rights reserved.
//
// Redistribution and use in source and binary forms, with or without
// modification, are permitted provided that the following conditions are met:
//
// 1. Redistributions of source code must retain the a... |
354bff67c9e1ae432f29af74742f533848e8ec496ae807b45bfa994afc7580b9 | C++ | 2,631 | 93 | //
// receiver.cpp
// ~~~~~~~~~~~~
//
// Copyright (c) 2003-2022 Christopher M. Kohlhoff (chris at kohlhoff dot com)
//
// Distributed under the Boost Software License, Version 1.0. (See accompanying
// file LICENSE_1_0.txt or copy at http://www.boost.org/LICENSE_1_0.txt)
//
#include <iostream>
#include <string>
#incl... |
0887370fde45bc42ef4a00349fa62ed38e7528dd98ae9fd24bf90b366f72c827 | C++ | 2,635 | 84 | //---------------------------------------------------------------------------//
// Copyright (c) 2013 Kyle Lutz <kyle.r.lutz@gmail.com>
//
// Distributed under the Boost Software License, Version 1.0
// See accompanying file LICENSE_1_0.txt or copy at
// http://www.boost.org/LICENSE_1_0.txt
//
// See http://boostorg.gi... |
6bf4e19457d4f24cf6f36858a3a809cebc6ff28b37d8df7b6b62607716d92e32 | C++ | 2,635 | 104 | #include "nucleotidetree.h"
#include <sstream>
NucleotideNode::NucleotideNode(){
count = 0;
base = 'N';
memset(children, 0, sizeof(NucleotideNode*)*8);
}
NucleotideNode::~NucleotideNode(){
for(int i=0; i<8; i++) {
if(children[i])
delete children[i];
}
}
void NucleotideNode::dfs(... |
13e156b299db233fa1f00c6f8ea8555db04bcf2ccfa01728fef3e070c9e791d9 | C++ | 2,636 | 63 | // This file is part of Eigen, a lightweight C++ template library
// for linear algebra. Eigen itself is part of the KDE project.
//
// Copyright (C) 2006-2008 Benoit Jacob <jacob.benoit.1@gmail.com>
//
// Eigen is free software; you can redistribute it and/or
// modify it under the terms of the GNU Lesser General Publ... |
a90a67cebf7999a5df44232e2ba6dddd598b241e59813750ac8cc2b1d28b23ac | C++ | 2,639 | 99 | //
// connection.cpp
// ~~~~~~~~~~~~~~
//
// Copyright (c) 2003-2022 Christopher M. Kohlhoff (chris at kohlhoff dot com)
//
// Distributed under the Boost Software License, Version 1.0. (See accompanying
// file LICENSE_1_0.txt or copy at http://www.boost.org/LICENSE_1_0.txt)
//
#include "connection.hpp"
#include <vec... |
c5fdc5ac5a8d3bc55518093439a7fefa51c2c18eed013a08d61ea5a776a4dc9c | C++ | 2,640 | 63 | #include "Transcriptome.h"
#include "serviceFuns.cpp"
void Transcriptome::geneCountsAddAlign(uint nA, Transcript **aAll, vector<int32> &gene1) {
gene1.assign(quants->geneCounts.nType,-1);
if (nA>1) {
quants->geneCounts.cMulti++;
} else {
Transcript& a=*aAll[0];//one unique alignment o... |
4b554dacac69093fe380eb04cf2b76d9e9f1c2cd178c280f7d99df02f8d37c26 | C++ | 2,642 | 101 | //
// daytime_client.cpp
// ~~~~~~~~~~~~~~~~~~
//
// Copyright (c) 2003-2022 Christopher M. Kohlhoff (chris at kohlhoff dot com)
//
// Distributed under the Boost Software License, Version 1.0. (See accompanying
// file LICENSE_1_0.txt or copy at http://www.boost.org/LICENSE_1_0.txt)
//
#include <boost/asio.hpp>
#incl... |
6d3fcb9fb42c27c4c4e2d62e165b54438bf44c7172abb588c57ee6e59244b5a8 | C++ | 2,655 | 75 | // This file is part of Eigen, a lightweight C++ template library
// for linear algebra. Eigen itself is part of the KDE project.
//
// Copyright (C) 2008 Gael Guennebaud <g.gael@free.fr>
//
// Eigen is free software; you can redistribute it and/or
// modify it under the terms of the GNU Lesser General Public
// Licens... |
d8b55ca7818edcfb01f409c64d93e13b770a7fa1ae0563ef651e0127f4911ae9 | C++ | 2,663 | 63 | // This file is part of Eigen, a lightweight C++ template library
// for linear algebra.
//
// Copyright (C) 2006-2008 Benoit Jacob <jacob.benoit.1@gmail.com>
//
// Eigen is free software; you can redistribute it and/or
// modify it under the terms of the GNU Lesser General Public
// License as published by the Free So... |
7e426e3b9e304aa42db25a37c7262583e38de00891c935f13ecb1827ccce6936 | C++ | 2,668 | 75 | // This file is part of Eigen, a lightweight C++ template library
// for linear algebra. Eigen itself is part of the KDE project.
//
// Copyright (C) 2008 Gael Guennebaud <g.gael@free.fr>
//
// Eigen is free software; you can redistribute it and/or
// modify it under the terms of the GNU Lesser General Public
// Licens... |
6a1a49d64912d9829ef3d991faf5a3f0e1e081126a1d8d387cdfa84fab70dc77 | C++ | 2,669 | 68 | // Copyright 2008, Google Inc.
// All rights reserved.
//
// Redistribution and use in source and binary forms, with or without
// modification, are permitted provided that the following conditions are
// met:
//
// * Redistributions of source code must retain the above copyright
// notice, this list of conditions ... |
277d86fd20bf07f4220fe4ae899c78f5b92af8beed00c6f495e72a4653a986ec | C++ | 2,674 | 106 | /*
Copyright 2014 Glen Joseph Fernandes
(glenjofe@gmail.com)
Distributed under the Boost Software License, Version 1.0.
(http://www.boost.org/LICENSE_1_0.txt)
*/
#include <boost/align/aligned_allocator.hpp>
#include <boost/align/is_aligned.hpp>
#include <boost/core/lightweight_test.hpp>
#include <cstring>
template<st... |
152f21ed214a4513632fb18772e4ef5f29bd9e86b9e1e404d29dde003f032f65 | C++ | 2,675 | 94 | //
// server.cpp
// ~~~~~~~~~~
//
// Copyright (c) 2003-2022 Christopher M. Kohlhoff (chris at kohlhoff dot com)
//
// Distributed under the Boost Software License, Version 1.0. (See accompanying
// file LICENSE_1_0.txt or copy at http://www.boost.org/LICENSE_1_0.txt)
//
#include "server.hpp"
#include <boost/bind/bind... |
f89424d22ab01fe11f81b8bf9f8279eced8ddee857292e14043d3bddd24eeeeb | C++ | 2,680 | 85 | // (C) Copyright Michael Glassford 2004.
// Use, modification and distribution are subject to the
// Boost Software License, Version 1.0. (See accompanying file
// LICENSE_1_0.txt or copy at http://www.boost.org/LICENSE_1_0.txt)
#include <boost/winapi/config.hpp>
#include <boost/thread/detail/config.hpp>
#if defined... |
97e7c12e6db99432d80c956b1b0a70db743f9eb000121a31f2781170144584a2 | C++ | 2,681 | 78 | //
// Copyright (c) 2016-2019 Vinnie Falco (vinnie dot falco at gmail dot com)
//
// Distributed under the Boost Software License, Version 1.0. (See accompanying
// file LICENSE_1_0.txt or copy at http://www.boost.org/LICENSE_1_0.txt)
//
// Official repository: https://github.com/boostorg/beast
//
// Test that header ... |
3c7d0f0e142452fb6d5654245e90c4483b458678106de0d0b03cff1181e2dd0c | C++ | 2,687 | 94 | //
// server.cpp
// ~~~~~~~~~~
//
// Copyright (c) 2003-2022 Christopher M. Kohlhoff (chris at kohlhoff dot com)
//
// Distributed under the Boost Software License, Version 1.0. (See accompanying
// file LICENSE_1_0.txt or copy at http://www.boost.org/LICENSE_1_0.txt)
//
#include "server.hpp"
#include <signal.h>
#incl... |
21c601db36b9c7c562d20b53753482ef28ec955604e2ac3aed62b674a5c6af01 | C++ | 2,688 | 84 | /////////1/////////2/////////3/////////4/////////5/////////6/////////7/////////8
// codecvt_null.cpp
// Copyright (c) 2004 Robert Ramey, Indiana University (garcia@osl.iu.edu)
// Andrew Lumsdaine, Indiana University (lums@osl.iu.edu).
// Use, modification and distribution is subject to the Boost Software
// License, ... |
d2c2c427b3b55f7105130bc3a69e3f792cbbcd87e97dff9256c0248124ae5891 | C++ | 2,695 | 90 | //
// Copyright (c) 2016-2019 Vinnie Falco (vinnie dot falco at gmail dot com)
//
// Distributed under the Boost Software License, Version 1.0. (See accompanying
// file LICENSE_1_0.txt or copy at http://www.boost.org/LICENSE_1_0.txt)
//
// Official repository: https://github.com/boostorg/beast
//
// Test that header ... |
ea9c48b54c84c63f470e3bff0594e0d49dd3864778f64152e6aa18aa20da062c | C++ | 2,698 | 94 | // Boost string_algo library conv_test.cpp file ---------------------------//
// Copyright Pavol Droba 2002-2003. Use, modification and
// distribution is subject to the Boost Software License, Version
// 1.0. (See accompanying file LICENSE_1_0.txt or copy at
// http://www.boost.org/LICENSE_1_0.txt)
// See htt... |
f20e9d534646993c6956fe2afa9a29c1f77610c00f79bd4b5ee4c2a519c95a86 | C++ | 2,699 | 90 | //---------------------------------------------------------------------------//
// Copyright (c) 2013 Kyle Lutz <kyle.r.lutz@gmail.com>
//
// Distributed under the Boost Software License, Version 1.0
// See accompanying file LICENSE_1_0.txt or copy at
// http://www.boost.org/LICENSE_1_0.txt
//
// See http://boostorg.gi... |
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