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Java
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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/*- * #%L * Fiji distribution of ImageJ for the life sciences. * %% * Copyright (C) 2010 - 2026 Fiji developers. * %% * This program is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as * published by the Free Software Foundation, either version 3 of ...
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/* * This source file was generated by the Gradle 'init' task */ package org.pesaranlab; import java.util.Iterator; import com.google.protobuf.Message; import io.grpc.Channel; import io.grpc.Grpc; import io.grpc.InsecureChannelCredentials; import io.grpc.ManagedChannel; import io.grpc.Status; import io.grpc.StatusRu...
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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Java
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/*- * #%L * Fiji distribution of ImageJ for the life sciences. * %% * Copyright (C) 2010 - 2026 Fiji developers. * %% * This program is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as * published by the Free Software Foundation, either version 3 of ...
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package edu.cmu.tetradapp.editor.ind_facts; import edu.cmu.tetrad.graph.*; import edu.cmu.tetrad.search.test.IndependenceResult; import java.util.Set; public final class MsepFactEvaluator implements FactEvaluator { private final Graph g; public MsepFactEvaluator(Graph g) { this.g = g; } @Ov...
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Java
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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Java
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package edu.cmu.tetradapp.editor; import edu.cmu.tetrad.data.DataSet; import edu.cmu.tetradapp.util.DesktopController; import org.apache.commons.text.similarity.JaccardDistance; import javax.swing.*; import java.awt.event.ActionEvent; /** * Opens the Nonlinearity Checks tool for the selected DataSet. */ class Nonl...
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Java
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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Java
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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Java
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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Java
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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Java
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package edu.cmu.tetrad.hybridcg; import edu.cmu.tetrad.data.ContinuousVariable; import edu.cmu.tetrad.data.DiscreteVariable; import edu.cmu.tetrad.graph.Node; import edu.cmu.tetrad.hybridcg.HybridCgModel.HybridCgPm; import java.util.ArrayList; import java.util.List; /** * The `HybridCgVars` class provides utility m...
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Java
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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Java
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package edu.cmu.tetradapp.editor.ind_facts; import edu.cmu.tetrad.util.TMath; import javax.swing.text.*; import java.awt.*; /** Paints a red wavy underline (squiggle) under a text range. */ public final class WavyUnderlinePainter implements Highlighter.HighlightPainter { private final Color color; public Wa...
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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Java
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/*- * #%L * Fiji distribution of ImageJ for the life sciences. * %% * Copyright (C) 2010 - 2026 Fiji developers. * %% * This program is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as * published by the Free Software Foundation, either version 3 of ...
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Java
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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Java
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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Java
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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Java
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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Java
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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Java
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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Java
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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/*- * #%L * Fiji distribution of ImageJ for the life sciences. * %% * Copyright (C) 2010 - 2026 Fiji developers. * %% * This program is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as * published by the Free Software Foundation, either version 3 of ...
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Java
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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Java
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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Java
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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Java
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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Java
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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Java
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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Java
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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Java
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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/*- * #%L * Fiji distribution of ImageJ for the life sciences. * %% * Copyright (C) 2010 - 2026 Fiji developers. * %% * This program is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as * published by the Free Software Foundation, either version 3 of ...
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Java
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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Java
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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/*- * #%L * Fiji distribution of ImageJ for the life sciences. * %% * Copyright (C) 2010 - 2026 Fiji developers. * %% * This program is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as * published by the Free Software Foundation, either version 3 of ...
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Java
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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Java
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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Java
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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Java
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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Java
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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Java
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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Java
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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/*- * #%L * Fiji distribution of ImageJ for the life sciences. * %% * Copyright (C) 2010 - 2026 Fiji developers. * %% * This program is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as * published by the Free Software Foundation, either version 3 of ...
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Java
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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/*- * #%L * Fiji distribution of ImageJ for the life sciences. * %% * Copyright (C) 2010 - 2026 Fiji developers. * %% * This program is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as * published by the Free Software Foundation, either version 3 of ...
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Java
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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Java
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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Java
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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Java
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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Java
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/////////////////////////////////////////////////////////////////////////////// // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // // and Richard Scheines. // // // ...
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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Java
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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Java
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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/*- * #%L * Fiji distribution of ImageJ for the life sciences. * %% * Copyright (C) 2010 - 2026 Fiji developers. * %% * This program is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as * published by the Free Software Foundation, either version 3 of ...
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/*- * #%L * Fiji distribution of ImageJ for the life sciences. * %% * Copyright (C) 2010 - 2026 Fiji developers. * %% * This program is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as * published by the Free Software Foundation, either version 3 of ...
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Java
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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Java
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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Java
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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Java
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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Java
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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Java
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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Java
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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Java
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/*- * #%L * Fiji distribution of ImageJ for the life sciences. * %% * Copyright (C) 2010 - 2026 Fiji developers. * %% * This program is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as * published by the Free Software Foundation, either version 3 of ...
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Java
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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Java
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/*- * #%L * Fiji distribution of ImageJ for the life sciences. * %% * Copyright (C) 2010 - 2026 Fiji developers. * %% * This program is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as * published by the Free Software Foundation, either version 3 of ...
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Java
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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Java
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/*- * #%L * Fiji distribution of ImageJ for the life sciences. * %% * Copyright (C) 2010 - 2026 Fiji developers. * %% * This program is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as * published by the Free Software Foundation, either version 3 of ...
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Java
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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Java
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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Java
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/*- * #%L * Fiji distribution of ImageJ for the life sciences. * %% * Copyright (C) 2010 - 2026 Fiji developers. * %% * This program is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as * published by the Free Software Foundation, either version 3 of ...
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Java
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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Java
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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Java
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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Java
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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Java
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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Java
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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Java
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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Java
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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Java
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/*- * #%L * Fiji distribution of ImageJ for the life sciences. * %% * Copyright (C) 2010 - 2026 Fiji developers. * %% * This program is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as * published by the Free Software Foundation, either version 3 of ...
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Java
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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Java
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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Java
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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Java
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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Java
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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Java
2,196
53
/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...