sha256 stringlengths 64 64 | language stringclasses 28
values | size int32 1 491k | lines int32 1 23.2k | content stringlengths 1 200k |
|---|---|---|---|---|
cf6560b44a3fe040200eb1ad326c0493bc12cff70e4ef57522b2ebfca3f79872 | Java | 2,197 | 90 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
4dd7997029ae268143253b4f8f69f8fe94d5cd3d16f43fd3d061338b5d4f9602 | Java | 2,203 | 57 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
bd40259401c43ac3c893ab3efc8950857c84648fbfbb1be7650aa6e1dd03db9a | Java | 2,206 | 65 | /*
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of t... |
f7f1dfaf9428d57d8f3f5cd245c1f67049b33df67dfc0b22e93b35d70e2c6ecd | Java | 2,208 | 52 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
0142f9d130be22c564966faeb1634483233a9be2934bcd460b343eed1b319d6d | Java | 2,210 | 61 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
60653d9d7647cafcbb6f40df19eaeb780d9133d5510e5c86bab0ec823f6704f3 | Java | 2,213 | 42 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
cb85b623784fd1bbef80db9094ee77893e8859eb79f6bddc297a9d4bcae6dee4 | Java | 2,229 | 56 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
f889426a5eabf439101fed215dfdce22161b6547b158825ab34f5d40aa1ea5c4 | Java | 2,231 | 68 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
a5a8552f85a059bddd272ee2324cb28e60808c4ee5737383f088a02d96569de3 | Java | 2,233 | 56 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
b2acbb23a583a5e842a0f6853b65f2d328ead883730be22b106b166a8b8a8ee4 | Java | 2,235 | 57 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
73b8c3faf698c81812f095e0f8a5a37b9149cf5afa173688fca040f87d26c0d5 | Java | 2,241 | 70 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
0b03c65d28389df463d7e172d4275ce4a5a58dc87d52293a9ebea3699f17b86e | Java | 2,244 | 54 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
1e832019eb118ad297b7b10f839112edfcef5dd4c14020fb1b1b8b478264f7da | Java | 2,249 | 52 | package edu.cmu.tetrad.search.score;
import edu.cmu.tetrad.graph.Node;
import java.util.Collection;
/**
* Interface for scoring a target node in a graphical model based on its local structure,
* specifically under an additive scoring framework. This interface facilitates the calculation
* of scores for a node giv... |
4b578a8d1fb8a4a92e9d7b99b145d7c81de300e35596ef70cedfc14cd8655493 | Java | 2,254 | 73 | package edu.cmu.tetrad.search.utils;
import java.util.Map;
import java.util.concurrent.ConcurrentHashMap;
import java.util.concurrent.atomic.LongAdder;
/**
* Counts conditional independence checks broken down by the call site that
* issued them. Thread-safe so it can be incremented from the parallelStream
* in FCI... |
a67b2819ba026b8b35d6161698e5aa40a5ae93c61e8e5a39cd06d96287845208 | Java | 2,258 | 64 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
5e4a721099dcdf81e6dc24bc6964a6c0be53ca9034533f39a6ddc8500e64010d | Java | 2,259 | 57 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
7c382d7b4964b50adea3ddac642783508d53d833389083a3ffc5e95a7abf7e00 | Java | 2,268 | 76 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
03d74550682be3ed13416c7ca18f4cac0864ca6152c452f7f60a347c859c748b | Java | 2,282 | 77 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
53e955289a5b76da99f4db20c775803dd3c665ef481aa3144b2d6e8ba1ce655b | Java | 2,286 | 48 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
aafb24f23ccf67747c4dc9784ddfc322f38e02c52d58bb92dccd5c3b246f62b5 | Java | 2,292 | 77 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
f50f369e4b0ab4bfdee4ee95b5ad3bd92dcf8740061772e4693de674d7aa15d2 | Java | 2,292 | 67 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
a31bb45e3cfbc7326dba1c240e387393140d3dab351ebb4b23eacec9a2e857d6 | Java | 2,294 | 63 | package edu.cmu.tetrad.search.cdnod_pag;
import edu.cmu.tetrad.data.DataSet;
import edu.cmu.tetrad.graph.Graph;
import edu.cmu.tetrad.graph.Node;
import java.util.LinkedHashSet;
import java.util.Objects;
import java.util.Set;
/**
* Oracle ChangeTest backed by a known true graph, for exhaustive verification harnesse... |
b952ca7bdf1b57d6c51773dacaeb6440a6932fc186a918bcfd36e4db2058d6b4 | Java | 2,295 | 68 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
09e7be02ebf03b7733595f4de75859f9913594b3af4251f1745dd5dd345f5949 | Java | 2,305 | 69 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
76e312cabf33e40422f1d88db47fed23e5b038a2a4bad7456de0e96fb4989b1c | Java | 2,308 | 78 | package edu.cmu.tetradapp.workbench;
import org.junit.Test;
import java.util.ArrayList;
import java.util.Arrays;
import java.util.Collections;
import java.util.List;
import static org.junit.Assert.assertEquals;
/**
* Tests that DisplayNode.compareTo orders possibly-lagged names sensibly: unlagged names first,
* t... |
19d0b2ea4743581d27b13f6893616c88232a8b8645369c2d9618fdf295c5ad55 | Java | 2,310 | 49 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
283045179705ce6e4f408cb6051c83c3183b6559aa02c0645a196ac1b31e044a | Java | 2,322 | 61 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
06b5bf8475d116c590cea619325446f7e8b39af7abd5f5a300746b55187552b5 | Java | 2,324 | 56 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
30ba385251187ce4e713f51d1918c88d37c3c08740c385505b4b99027fa523ed | Java | 2,333 | 73 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
664cdb391b8e4606043061bddcf6906a2d4746ea15cb9b3569a166f47ab5b330 | Java | 2,338 | 66 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
8ef2d0e917fe22b480c7231d33ab0127b3964966c8e54f32eb6c188640ab7e04 | Java | 2,344 | 63 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
d6bc246689e31971ad5d710ee09c88f849d3dec2befd5a03b644c1f505e45f43 | Java | 2,345 | 67 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
0f255a98cd73a0951fb30bc110cf0f6b14512f0cc47835a6651ff87935da4628 | Java | 2,346 | 68 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
79776788508558af6826a8ae245f858308829da1d205e3453fee09be8cd74b59 | Java | 2,352 | 59 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
7d583e55559dd7c1ae691c82679452a013526c978c6b78bf71b57de181ffc5c6 | Java | 2,364 | 89 | package edu.harvard.zhuanglab.tma03;
import android.content.Context;
import android.graphics.Canvas;
import android.graphics.Color;
import android.graphics.Paint;
import android.graphics.Rect;
import android.util.AttributeSet;
import android.util.Log;
import android.view.View;
public class TMALockView extends View {
... |
571d03baa4d6dc008c12ba222850eb6597b4e38a9b7909ac6a1b4e3cc3b1147b | Java | 2,373 | 62 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
40cd5b66155b4a3b36bd37c683065518cb750e96531f11d18815df5cc2bcabb4 | Java | 2,387 | 67 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
3a8f60352e11eb7eec201dd72772eb23f74c3e35717482f00042d8845fedf5e8 | Java | 2,400 | 62 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
6403822882e538f98e012accace76501834464d069647472d5d864f591cc6800 | Java | 2,405 | 72 | ///////////////////////////////////////////////////////////////////////////////
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
// and Richard Scheines. //
// //
... |
c24817e6d87f49e448c53fed451944be456e7e3dc8ae7983f2fb6dfacf0ce270 | Java | 2,405 | 71 | /// ////////////////////////////////////////////////////////////////////////////
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
// and Richard Scheines. //
// //... |
94ca5bac217d755fc9f10166f04955101c778710a30c07b5eddc8826f3a40229 | Java | 2,409 | 67 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
edc9d3c3e0cb52cdff0d0aba212ec0cd0e53cea1cbae6f526f3769d457089433 | Java | 2,418 | 61 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
6438aa5685a6513927e22d19ec11673612ae338436f3ef014397beb9b048ab39 | Java | 2,420 | 57 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
2e86a74962dbdee15de69e7bd0226e6ae3242994e2e0ce777e524435b80813a0 | Java | 2,422 | 58 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
0f0862dc90eb29e687fbe0c5d43dc0347564750984ad41432854966df786a9cb | Java | 2,436 | 67 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
45a57794b55914e74aa64e3f2c4cf4bb326085cdd5821c6efc5e94d7470d5429 | Java | 2,436 | 60 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
7c1abdd35c22f6ec7fbbb1e61388bf54ef3ff91a8df40dcf98d0f62ad702f8c1 | Java | 2,443 | 85 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
51248edf3ce2d0b54610d02811ab1c71aa4af1f3ee0217375955b714c93ae950 | Java | 2,455 | 56 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
b1a8fd8a1377b2bcd2aeb53e68c63362cf23e6464a43b88ecfa24955b7aef14a | Java | 2,471 | 63 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
cf8a8ffb7b2a2e68d01904d3f886adaf1cc30a4466ddf4f38ffdd7073cbaf53d | Java | 2,471 | 61 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
2b39e477f3b907a22b34ee009b4ff059855f86adfee886f4190d148e3ba6af1d | Java | 2,472 | 85 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
5aed7dc0f2cc24cd1d4e0b4925fdb1801c416cccf4f927820a7d3696b6140588 | Java | 2,477 | 63 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
355d6648560dde87208f6c4ff82a281e9b93be0e09f006b08c69b7668cd21d41 | Java | 2,486 | 59 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
2d9393f588655dcd5e786c6e3b11dad4c99ab14a97097369615053190bfbf81b | Java | 2,490 | 61 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
114ca6a7f41b9b04dc377d40c774ac307a1ffeda5af206039bec897c943d1a3a | Java | 2,499 | 63 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
2dfe475dee63c5e6632bf9f842f529325343a6d083c89c68dd50ca2ff48720a1 | Java | 2,504 | 69 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
232c9cde9d990acb318515080500ab336b2f62690f6356da943b2cd7fc9157a6 | Java | 2,509 | 47 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2026 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
5fadcb4a1c9917576cc4cfbd6df39553333d3101a4b6cb4db018306a6e41bf45 | Java | 2,512 | 69 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
c4d0cb9edc1ea9c5679b50771b599e690cf58f194cdefcff2aad75b1065df4a2 | Java | 2,512 | 62 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
b2bf5231eb43385a612e296e98e4361a48c7f9f1c0fd807d811226d5bd7e3351 | Java | 2,519 | 80 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
44c0b826dac746c9a451a9646546d9d8b546dc5cc7fa88487296416ee1a358c7 | Java | 2,522 | 52 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
462fdb4dea2473008d051df653a2a8d360e3fdb398da63e6f341bba59f899ea8 | Java | 2,524 | 75 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
fb89148456385484d4dbe096708f73062388edf1d54b1f510285d339b95cef90 | Java | 2,532 | 65 | package edu.cmu.tetrad.graph;
import java.util.List;
/**
* Utility class providing factory methods for creating instances of different types of
* Graph objects. This class allows for the creation of graphs with specific configurations
* or replication policies.
*/
public class GraphFactoryUtil {
/**
* P... |
1662b6c84574aea370bc8ae37ab868cfe7d02371a773cdeaecdea304eaa1c581 | Java | 2,537 | 69 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
e21d7644b52084ebee30933bbf20d8645cff476cee8720b4807ac4956f09cce1 | Java | 2,540 | 57 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
0818c4a900e050faa2e975d0a9773057acd4bfa0f440e5c47cb5831639970310 | Java | 2,547 | 48 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
7a38db139a1f29faf2eaa59cc3924fb7c401a4472bfc4785f13953977f750fd7 | Java | 2,574 | 68 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
1c496e82d443a1436ca97916ced1ffe9bcc0c102ec3796a5dc8459c84b880bfa | Java | 2,575 | 69 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
071dfbdd9b910e4be6ce6ce3886b9f37fb2b2d57cceb3f45c81c067753e9b5c8 | Java | 2,580 | 64 | package edu.cmu.tetrad.search.mimic;
import edu.cmu.tetrad.util.Parameters;
import edu.cmu.tetrad.util.Params;
/**
* The RunEvaluation class is responsible for configuring parameters, executing
* mimic benchmark trials, and generating a report based on the results. This
* entry-point class utilizes the MimicBenchm... |
7cadd217e19325bac57caf7f775ed0dc1c7205053fbe8ec4b49f4f102ed124b9 | Java | 2,585 | 63 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
41547d86c63fc245d0b66596a95e2e8624ef6f923d9b8ae79446cb1892241294 | Java | 2,592 | 68 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
6af417639994d9611d9ae84bd05bb7ecf7d0b6462cc81bfb7285badec34ff79e | Java | 2,592 | 55 | package libsvm;
// Class representing the SVM model
public class svm_model implements java.io.Serializable {
public svm_parameter param;
// SVM parameters used to train the model
// For classification
public int nr_class;
// The number of classes in the dataset.
// For binar... |
1771e82a9cd13368f5e9211b2a83228d8bdf5d89fb19942f5334b9792d151a65 | Java | 2,595 | 63 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
0ca5f82dbb802c417448b29e8ccb80d5ce580b7655d358acb0630be54ea5a42b | Java | 2,605 | 62 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
ff77df52386ddce29e7cba975cdfc3c2e8f87cbc130ea6d6ed47ec5dbd70a5ae | Java | 2,616 | 54 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
ce8df3d1f3e1e0b9b0499aee2d3a9cfa4a2f5d1befc76f4710fe5cd8a9b0107a | Java | 2,634 | 78 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
9ef35865af72bf71fc0e4cd5d24c44f2c6ffa1a2eef459d3831a8072a2bbd4e2 | Java | 2,636 | 59 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
60a6f139c30b1a2febb0ff6ec688ca2b16da744907422ba6ebb81810eba6da9e | Java | 2,642 | 68 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
08d8b1b9e30f2edcbf20f26302fe74e6611a6d273bc716c70123795d42af469d | Java | 2,648 | 67 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
7266fdc14311d49284f793cf0347ac165dcd7c2fa07a5c90c05fb5086097d5d8 | Java | 2,649 | 77 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
7324d641ddec72fbf4d9d45bd860e001d400df71199bd4d8acd0ac391faa6c43 | Java | 2,653 | 61 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
77ee7944835c625dc659f57b97b018ac200696998effa59de46bfa06a46c159f | Java | 2,657 | 79 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
9692701ddf394b9cf705c45820ec09b66eca7b4a10974dac6bb42ac77a56ac4c | Java | 2,669 | 85 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
03fb81e33e354fd637898379fdf59a5c961dd1221cd438f79290e6520c8751b4 | Java | 2,670 | 75 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
a72e1104ac45a1c0fa9c41f6996327482d6c65b0944057e9830d9c3cc33410ce | Java | 2,679 | 95 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
8c0f1027700d18540d0c394672fe06232406a51c40315eaf9d52f62da7905bc3 | Java | 2,680 | 61 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
902c9e33227191981d03fab446b16e7bf21832a027171cf2709249efb8eee7dd | Java | 2,681 | 49 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
12dcea5f450cf4bf70c33f8e20b3e0b7086e734d8e51733e4d369e355a52b8b6 | Java | 2,684 | 66 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
d9babbdc3099c90511809a85e197ede4008c949cec64f61c039415ac9e4383df | Java | 2,689 | 65 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
cbc15a863fac37f657a234d2dd974408172e57e502469d6fe0a5fa0973329707 | Java | 2,692 | 68 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
7101c1cce9040afbb75d1712d8f6d785cd135be07b15a88bbee1d06c3d3cc051 | Java | 2,693 | 59 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
69affe9d108f229dac21a84e4ed66b225e8a5f377f3ed5a22107b153d953cf0a | Java | 2,703 | 79 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
4bd4696557b73534a65c6f4d4a18a49caae26ac06d766b86083ced5f6fcbbcdb | Java | 2,709 | 63 | package edu.cmu.tetrad.search.cdnod_pag;
import edu.cmu.tetrad.graph.Edge;
import edu.cmu.tetrad.graph.Endpoint;
import edu.cmu.tetrad.graph.Graph;
import edu.cmu.tetrad.graph.Node;
import java.util.ArrayList;
import java.util.List;
/**
* Utility class for handling operations related to partially oriented edges in ... |
e6ced64a278e07dd3dcc3871be6312f07e7c42d8d49263b37352d92ef8bfdbdd | Java | 2,712 | 64 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
8cfe394b53a664bfeea78d52f66219a1ebe9ea602de691875d0ecabe791a2090 | Java | 2,713 | 66 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
e015d2d76e1bd83da89a640bf10ee481fa61fd24e9e090f19cc20844b1b4d7b8 | Java | 2,725 | 71 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
8ce144a2a4f598eb41c80ebcd3a75ee29d6d3bd58c0c444a5854e02e6620083d | Java | 2,737 | 77 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
0ff84573ccc216fd38165936dfc70f4e28fb3daf36d5eb1994e5f71dcba24260 | Java | 2,741 | 71 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
0f1e23b6e5539ce241636f190ed50087c949cac01e81cee87ff7b623677ecbbf | Java | 2,743 | 77 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
16f23fba1467b44bf056e5e9138c9047eb9c6bfaa8786139a0b2e29937cbac67 | Java | 2,749 | 62 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
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