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/*- * #%L * Fiji distribution of ImageJ for the life sciences. * %% * Copyright (C) 2010 - 2026 Fiji developers. * %% * This program is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as * published by the Free Software Foundation, either version 3 of ...
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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/*- * #%L * Fiji distribution of ImageJ for the life sciences. * %% * Copyright (C) 2010 - 2026 Fiji developers. * %% * This program is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as * published by the Free Software Foundation, either version 3 of ...
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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/*- * #%L * Fiji distribution of ImageJ for the life sciences. * %% * Copyright (C) 2010 - 2026 Fiji developers. * %% * This program is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as * published by the Free Software Foundation, either version 3 of ...
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2026 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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package edu.cmu.tetrad.search.mimic; import edu.cmu.tetrad.graph.Graph; import edu.cmu.tetrad.graph.Node; import edu.cmu.tetrad.graph.RandomGraph; import edu.cmu.tetrad.util.RandomUtil; import org.junit.Test; import java.util.List; import java.util.Set; import static org.junit.Assert.assertFalse; import static org.j...
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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package edu.cmu.tetradapp.util; import org.junit.Test; import javax.swing.*; import java.awt.event.ActionEvent; import java.awt.event.KeyEvent; import java.util.concurrent.atomic.AtomicInteger; import static org.junit.Assert.*; /** * Specifies ArrowKeyNavigation: plain arrows bound in the ancestor map, modified ar...
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/*- * #%L * Fiji distribution of ImageJ for the life sciences. * %% * Copyright (C) 2010 - 2026 Fiji developers. * %% * This program is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as * published by the Free Software Foundation, either version 3 of ...
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Java
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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Java
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package edu.cmu.tetrad.search.utils; import edu.cmu.tetrad.data.DataSet; import edu.cmu.tetrad.util.TMath; import java.util.*; /** * Quantile-grid binning for conditioning variables Z, returning groups of row indices. * * <p>Given a set of conditioning columns (zIdx) and a list of dataset row indices (useRows), ...
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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/*- * #%L * Fiji distribution of ImageJ for the life sciences. * %% * Copyright (C) 2010 - 2026 Fiji developers. * %% * This program is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as * published by the Free Software Foundation, either version 3 of ...
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Java
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/*- * #%L * Fiji distribution of ImageJ for the life sciences. * %% * Copyright (C) 2010 - 2026 Fiji developers. * %% * This program is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as * published by the Free Software Foundation, either version 3 of ...
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/*- * #%L * Fiji distribution of ImageJ for the life sciences. * %% * Copyright (C) 2010 - 2026 Fiji developers. * %% * This program is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as * published by the Free Software Foundation, either version 3 of ...
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/*- * #%L * Fiji distribution of ImageJ for the life sciences. * %% * Copyright (C) 2010 - 2026 Fiji developers. * %% * This program is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as * published by the Free Software Foundation, either version 3 of ...
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package edu.cmu.tetrad.search.cdnod_pag; import edu.cmu.tetrad.data.DataSet; import edu.cmu.tetrad.graph.Node; import java.util.*; /** * Thin wrapper around ChangeTest providing multi-context checks for the orienter. */ public final class ChangeOracle { /** * The primary dataset used for conducting chang...
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/*- * #%L * Fiji distribution of ImageJ for the life sciences. * %% * Copyright (C) 2010 - 2026 Fiji developers. * %% * This program is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as * published by the Free Software Foundation, either version 3 of ...
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Java
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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/// //////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //...
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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/// //////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //...
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2026 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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import libsvm.*; import java.io.*; import java.util.*; class svm_predict { private static svm_print_interface svm_print_null = new svm_print_interface() { public void print(String s) {} }; private static svm_print_interface svm_print_stdout = new svm_print_interface() { public void print(String s) { Sys...
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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package edu.cmu.tetrad.search.test; import edu.cmu.tetrad.data.DiscreteVariable; import edu.cmu.tetrad.data.DataSet; import edu.cmu.tetrad.graph.IndependenceFact; import edu.cmu.tetrad.graph.Node; import edu.cmu.tetrad.util.TMath; import org.apache.commons.math3.distribution.ChiSquaredDistribution; import java.util.*...
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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/// //////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //...
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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Java
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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/*- * #%L * Fiji distribution of ImageJ for the life sciences. * %% * Copyright (C) 2010 - 2026 Fiji developers. * %% * This program is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as * published by the Free Software Foundation, either version 3 of ...
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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Java
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2026 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //...
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Java
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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package edu.cmu.tetradapp.model; import edu.cmu.tetrad.data.DataModel; import edu.cmu.tetrad.data.DataModelList; import edu.cmu.tetrad.data.DataSet; import edu.cmu.tetrad.graph.Graph; import edu.cmu.tetrad.sem.AdequacyParams; import edu.cmu.tetrad.sem.AdequacyReport; import edu.cmu.tetrad.sem.TrainedDagAdequacy; impor...
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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/// //////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //...
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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/// //////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //...
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/// //////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //...
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/*- * #%L * Fiji distribution of ImageJ for the life sciences. * %% * Copyright (C) 2010 - 2026 Fiji developers. * %% * This program is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as * published by the Free Software Foundation, either version 3 of ...
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/// //////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //...
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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/*- * #%L * Fiji distribution of ImageJ for the life sciences. * %% * Copyright (C) 2010 - 2026 Fiji developers. * %% * This program is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as * published by the Free Software Foundation, either version 3 of ...
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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/*- * #%L * Fiji distribution of ImageJ for the life sciences. * %% * Copyright (C) 2010 - 2026 Fiji developers. * %% * This program is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as * published by the Free Software Foundation, either version 3 of ...
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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/// //////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2026 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //...
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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Java
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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Java
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/// //////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //...
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Java
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/// //////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //...
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Java
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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Java
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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Java
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/*- * #%L * Fiji distribution of ImageJ for the life sciences. * %% * Copyright (C) 2010 - 2026 Fiji developers. * %% * This program is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as * published by the Free Software Foundation, either version 3 of ...
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/*- * #%L * Fiji distribution of ImageJ for the life sciences. * %% * Copyright (C) 2010 - 2026 Fiji developers. * %% * This program is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as * published by the Free Software Foundation, either version 3 of ...
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Java
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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Java
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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Java
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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Java
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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Java
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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Java
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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Java
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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Java
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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Java
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2026 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...
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Java
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/////////////////////////////////////////////////////////////////////////////// // For information as to what this class does, see the Javadoc, below. // // // // Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, // ...