sha256 stringlengths 64 64 | language stringclasses 28
values | size int32 1 491k | lines int32 1 23.2k | content stringlengths 1 200k |
|---|---|---|---|---|
10938618c2bb4fa72a9e553d688a143d856ff4bee016e541640bab2253b0d82e | Java | 6,052 | 156 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
b127d66b4640d162706a71980492b5f0ed110690f57bd544f6225173fcc219c2 | Java | 6,060 | 187 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
9c8dd4e8afdec6e6ee8c132242185c00f371e19bf7445f72087967bf26f02a10 | Java | 6,073 | 126 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
c395514aa3ade716cf30154d74354c83105e070a0a2d2d400c4724dfc7f3c2c7 | Java | 6,081 | 161 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
e61563cf7aad0dff5d80c78f313ec2f2ef25d629c5eccd02320d9178f358d4bb | Java | 6,093 | 121 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// Copyright (C) 1998, 1999, 2000, 2001, 2002, 2003, 2004, 2005, 2006, //
// 2007, 2008, 2009, 2010, 2014, 2015, 2022 by Peter Spirtes, Richard //
... |
40afc8835c876cd52312e1d2d1ec55b635f482edf109a1f0b90083fc00ac9881 | Java | 6,101 | 175 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
bee8ae19857434ee62bb0d9e8a71b1d866c8e2ef9fdb862c182ae981ced38024 | Java | 6,113 | 170 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
fc755dffd3b7632ff5641959ccdd8ff21f0352ae38c53b1088b13d3aeb0af2e3 | Java | 6,113 | 172 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
93e8186efc51a6f740d22a0f33c7d73572e3c11ed564857e80f85d148806e0f4 | Java | 6,117 | 126 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
ecf5a798141428a42c996a715889ab1d528a2f04c51b30b17bdd079e9fe5fff5 | Java | 6,121 | 145 | package edu.cmu.tetrad.sem;
import edu.cmu.tetrad.util.TetradSerializable;
import java.io.Serial;
import java.util.Collections;
import java.util.List;
/**
* Represents a report evaluating the adequacy of a model's performance relative to a baseline.
*
* This class captures key metrics, including the overall mean ... |
a64663aa96d263cc07d6381d24029328d2b9711074b881bfed96f013ae81ab94 | Java | 6,134 | 169 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
68b183157d5b921cf408a2d840e80d2f5f752e0e4edd4693fb380032c9b585cf | Java | 6,139 | 175 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
ce85041c2a8e3b0bba4e88703e0c6063e7454f21721df97ce361ec1fba770dfa | Java | 6,146 | 200 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
49e4fedfe0dd5cbb09aec48678d8fab695c38a0fc555f8decba9c63c5aa0367c | Java | 6,147 | 166 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
3904dea63ec8f52ab8674fc580c458e19b1335b2849891ea5135f495064c156c | Java | 6,158 | 198 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
50df0d99a909f9c3d55513077bbe394164a35487a80ffc86a907688e9d7775c1 | Java | 6,158 | 129 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
575bb3005bc4a4454e6c13a6aa822383ee7407fc0c0871b4527c3effe6ff4963 | Java | 6,158 | 189 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
0196b3150761fafa2a815c000ad95040ff4c625f60a1b0ea091916e8c4335792 | Java | 6,159 | 156 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
040d38f3d11b11539d8a633c377472240070b116e5a6ed480249f6adb2a8b1f4 | Java | 6,162 | 163 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
8a3cb3d026f72668d2968493226df42557b057da4c0fe7598774d8bde72061a9 | Java | 6,162 | 134 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2026 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
4a04e4902b75319106f8c3bf6b129f5250ac0c7b9e6dc5538b03cdc480ed4bad | Java | 6,163 | 197 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
c7e76cb7fd79236601bf17138bdfc8863db5202481921ce20626fe7e4e44be17 | Java | 6,185 | 170 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
a596adb20f8267385d949fcdcafa3e599892674f397e96c71f6f645548332bfe | Java | 6,209 | 135 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
44d458b83ab3d8cbe5f94b712d3929cb27bdfcb3bb2f4f5dde482c4168b82c12 | Java | 6,210 | 161 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
ed244d8e4350172415f2ea8f7b67d2d225fc8a50621e07b31f414a92b27de34f | Java | 6,218 | 150 | package edu.cmu.tetrad.sem;
import edu.cmu.tetrad.data.BoxDataSet;
import edu.cmu.tetrad.data.DataSet;
import edu.cmu.tetrad.data.DoubleDataBox;
import edu.cmu.tetrad.graph.Graph;
import edu.cmu.tetrad.graph.Node;
import edu.cmu.tetrad.sem.RandomMlpSupport.RandomMlp;
import org.ejml.data.DMatrixRMaj;
import java.util... |
13de4c6400ffd7a1a0a380aefce2045a2d15c9b36f7ce51e40fbe5929d521368 | Java | 6,224 | 169 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
5129d2d4fafddf000c1045aefd1c2bc2c62961fb62354d8054c4ad96f505843d | Java | 6,226 | 163 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
daa23f18df12b0d34c8e2d3cda6ac5ed0228fe386d567316aab3e4bb4008be03 | Java | 6,239 | 167 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
4b6d30322cef8aafcbf23f447f3d97cb8d17a29286ed4ca7155789d35bfa429b | Java | 6,255 | 236 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
68d2e93dd326a34149cbaa8f0875197d0a395d79c2876421d9422fb42d933cae | Java | 6,255 | 182 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
d021227d279f0b0ae5c3654a6f00bcada6c8e8edee1ddb6ff8e3a153b83d460c | Java | 6,257 | 157 | package edu.cmu.tetrad.search.utils;
import edu.cmu.tetrad.data.DataSet;
import java.util.Arrays;
import java.util.List;
import java.util.Objects;
import java.util.concurrent.ConcurrentHashMap;
/**
* Cache for quantile-grid binning groups used by minimax-style conditional independence tests/scores.
*
* <p>Groups ... |
f34dfcb95f592118c4e5522900980aa7929f8487eb01f1a9865549e5fee391bb | Java | 6,258 | 215 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
336e32f940f1374dbf0fb10be5223894c87091729a310627fad44441e9e565e5 | Java | 6,265 | 165 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
9ce8a110a401988d5485ba236343da4a23ed4f5182a0afa6089c1a6bf80ec524 | Java | 6,279 | 149 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
ba15cbe85a4eee7986ac4d05582e09af7ccfc2ba12ce423f1214c4548ae464f2 | Java | 6,282 | 160 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
7a52246e7bee2a17ef363296a0dd825d222ee9256e32bcdd245a15e8a319c542 | Java | 6,300 | 222 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
d2ec814421937d118f71f4574008a4a43d09a18de8313dd3ff524840c468adfc | Java | 6,305 | 172 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
e297cc5c18dcaf441ff6dede55d85b9129cc7597b12de37e5589a80b24fa9649 | Java | 6,337 | 207 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
5f72588c5f18f122f692f7ed49b40473dce44d35fd879acdb95fcb265d4ff2ba | Java | 6,345 | 166 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
caa31e3b8464812dc09c453115f7c267df3ef0a7de1a93a11fd42575a6f4d6d4 | Java | 6,349 | 201 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
8a05ac852bdc05a04ff3741521b6cd0548453fa8618798f5d6cf855f2b2a646d | Java | 6,371 | 151 | /// ////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //... |
a77933d828236e239d0c3b2a0301c401b0c5a08aede3430ffbb2f01fb4ae54f6 | Java | 6,380 | 143 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
8731edb77711cc1546224f7f8088fb9e1f02cf7a76dc5157d6d2a38d61cc6555 | Java | 6,384 | 171 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
61e7d0e9b532bf132a22443bf09ea78c98968fe5ae9914c0e242c6161a76386e | Java | 6,385 | 188 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
342cece6323ee4a266fcff92ddf1708f62ad38db8c9f81624ea54d48d38c0298 | Java | 6,392 | 169 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2026 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
e4581d6aae02b47298aa770370a146320c242c56b16655a582bc17e6c7282abc | Java | 6,393 | 175 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
0bc4a99422c291fbdab3c2b0fa17478fa8bdd14766640c92e4d929cc4d911f3f | Java | 6,396 | 170 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
8d2123f053a79f57fac982f2b13654b38e49b1dd9a417a1f7c0c226ecf5b5718 | Java | 6,400 | 214 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
6edf93e9a30320423691f33f2b53db4611079ed5af1b5c9d367ade755162c8d9 | Java | 6,419 | 169 | package edu.cmu.tetradapp.editor.ind_facts;
import javax.swing.*;
import javax.swing.event.DocumentEvent;
import javax.swing.event.DocumentListener;
import javax.swing.text.*;
import java.awt.*;
import java.util.List;
import java.util.*;
public final class IndFactsDslPanel extends JPanel {
private final JTextPan... |
b72bacc0f2e1a4d5bc88d2e499c72a93e3b6d59d277efa3731399ce169311446 | Java | 6,430 | 169 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
05a87844f5bfe0e3860e3be16e3924483f17448398209d399500d537d5e5ca64 | Java | 6,431 | 171 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
1b1af0aeee8b03444fc27212d63d2bc7cbd94a2572044fdb5f4c7d769e6e5038 | Java | 6,431 | 159 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
d725e360ac7da3266c571ef92602eb5a941137775ab33e2adb8bb1b982055269 | Java | 6,435 | 122 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
eb1fb69821dbe89488fdfee58b84eb3864c9585727a3441bfd8a4bb5e17b899c | Java | 6,439 | 164 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
41e232e467ee40951d1e404a0fed1b50de4e793221ffb2ffa25b61471fda65f9 | Java | 6,453 | 194 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
3430cc8898990a33b48152dbe1f017b9ee1785dc751c7a66785fb4a52e312ba3 | Java | 6,458 | 137 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
9acd19e476bbf733421be7263b8fd060e102061dcb01bd0aa93b00efb105a399 | Java | 6,459 | 153 | package edu.cmu.tetrad.search;
import edu.cmu.tetrad.algcomparison.graph.RandomMim;
import edu.cmu.tetrad.data.CorrelationMatrix;
import edu.cmu.tetrad.data.DataSet;
import edu.cmu.tetrad.graph.Graph;
import edu.cmu.tetrad.graph.Node;
import edu.cmu.tetrad.search.ntad_test.Cca;
import edu.cmu.tetrad.sem.SemIm;
import ... |
66d9cdc930aaf616580e499aca16d14efff199e9415bf74cb8f1ddc9e887f6e9 | Java | 6,465 | 213 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
901e24333d40addefeab69171c15ea2abc1519ac6c139aaabbac5788c87d0672 | Java | 6,476 | 147 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
9059216009060b8ac313ece5568b0ec4d9140527a4776a46e23879731930a8da | Java | 6,476 | 179 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
d93ebb72ddb0fb0f6e994542741d0c5e4512619e55c6a917c098506a89a9ed8b | Java | 6,481 | 193 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
0f7afcbb82098c70c7c2d0f826e7b5a694088bd6e218dae5eaca17d570c3728a | Java | 6,493 | 174 | package edu.cmu.tetrad.search.cdnod_pag;
import edu.cmu.tetrad.data.DataSet;
import edu.cmu.tetrad.graph.Node;
import edu.cmu.tetrad.search.RawMarginalIndependenceTest;
import edu.cmu.tetrad.search.test.IndTestBasisFunctionBlocks;
import edu.cmu.tetrad.util.Matrix;
import edu.cmu.tetrad.util.Vector;
import java.util.... |
a62d69f7364aa8d8c7f51d88e330b1d3690f811f0f57005f6de29dbf6e685d43 | Java | 6,493 | 225 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
f12a337db9a97c7ca74a496c7b736c380a5b90bb6cd969f3a1339028d3a8dbeb | Java | 6,503 | 144 | /// ////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //... |
40177c59c022bacb26023a6b92e3eea57b7b04eed7822e91195bc372b86ec440 | Java | 6,511 | 185 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
a026f3df17ac66693f439240a0b44228633a81c4ea90e85b693c184f7248e768 | Java | 6,531 | 253 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
2a3407da9628a888968a4a39147ce6cbea858f05d6fa9a9dad0e70bf699a66a6 | Java | 6,534 | 189 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
b211f57ffe4f0dba5a4fbb473300496dce9b48b8f4c9688c1d34e87457822ef2 | Java | 6,594 | 167 | package edu.cmu.tetrad.algcomparison.algorithm.oracle.cpdag;
import edu.cmu.tetrad.algcomparison.algorithm.AbstractBootstrapAlgorithm;
import edu.cmu.tetrad.algcomparison.algorithm.Algorithm;
import edu.cmu.tetrad.algcomparison.algorithm.LatentStructureAlgorithm;
import edu.cmu.tetrad.algcomparison.algorithm.ReturnsBo... |
571f16fb825240008f6fa1d9fc72ba7c710568d6fc229597b100a574225149a0 | Java | 6,603 | 198 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
630d476ae297f164f4c9563e315b208d6d900e490aaa572245657edf3ff02da0 | Java | 6,609 | 144 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
3e753be6b37c51d4d3dfa6d3dc4dd8cfcd532558cd3ec5ae8fb5a3e333351c7c | Java | 6,611 | 161 | package edu.cmu.tetrad.graph;
import edu.cmu.tetrad.util.TetradSerializable;
import java.io.Serial;
import java.util.*;
import java.util.regex.Matcher;
import java.util.regex.Pattern;
/**
* SVAR-style lag mirroring policy.
* <p>
* Node naming: base at lag 0 is "X"; lagged versions are "X:1", "X:2", ... When edge ... |
29767c9644fff88aa0ff38a314136669082356cda030f50093a69e41c1d1ca1f | Java | 6,613 | 187 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
565726411112da5e950d00dc271f4c8402511ea62f6eb5648247b185d9852a8a | Java | 6,616 | 147 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
1ba3b769b415e8c21317f73371444142f94f0a8a8625c907b9ab1f0b258a9371 | Java | 6,648 | 201 | /// ////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //... |
52231d5c41e2a4ab0c5f96b87210cbe4b00b1a004109530a074a0ca14e74e150 | Java | 6,655 | 174 | package edu.cmu.tetrad.hybridcg;
import edu.cmu.tetrad.data.DataSet;
import edu.cmu.tetrad.graph.Node;
import edu.cmu.tetrad.util.TMath;
import java.util.*;
/**
* Utilities to populate HybridCgPm cutpoints for discrete children that have continuous parents. Cutpoints are computed
* from a DataSet using either equa... |
f0836bb59f4353ef1f5622f7a292049555ef6fbe86e0a95696fd67e893976886 | Java | 6,666 | 186 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
52488402afc604e479e4b160ac2e91443cd2b56def3a02167184e75862d8e80a | Java | 6,670 | 219 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
c6f2a49209b59dd24c6edb5ca4814d002729434cb42a0c0f15e2b873dfa01bc7 | Java | 6,681 | 158 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
2970bc04060d286ba5b5adf559b5d5fb1241d06ff35b3712596fe7c709358a96 | Java | 6,682 | 179 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
0a5c367acb50baf29e5ca60c65236a35612410a37b8b97cdcba2737b7c6e0135 | Java | 6,696 | 196 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
a057d4de3d712ecb26426d3b4806802330088e088e2ed13fdd2349ec784db420 | Java | 6,704 | 185 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
4e7c8af5a6ac507b9e8c56865c8a3a73d46d839edfe3086364bb7ac503e4f542 | Java | 6,711 | 141 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
c0e23f56b0f222f48908d4e78d7c9b4730683b4cff00092eeb2bc8644baeaf7d | Java | 6,728 | 208 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
5b816ced20c04aac9746fb5e652c3946829bf02b6b79af110320716966d73137 | Java | 6,736 | 182 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
5644610dede16640805227dfb90e745a66e2495ce88063e62ac4449224504ad1 | Java | 6,748 | 185 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
87f3d4d05d96d02b6fbb3e2811e604dc15af5852c4b8612c1cb2b1364e33d93a | Java | 6,753 | 216 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
59abdddbef110144f64d9a47ab26f4d46fb10a9e819586a6c20c7694955f705c | Java | 6,767 | 146 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
faea4858fdba3431165e55945deacc2e8d77fd2e1588c279a918e8ca7da2143d | Java | 6,767 | 169 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
3e2ab4aef4dc1b484bd3414330b045f5868721e2ff84f2e489d716cdb0729bf9 | Java | 6,770 | 155 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
818f983ccdc4bfc37a9cb35b04f55d8a390d8347ca4d1662073e8d88431a48b3 | Java | 6,785 | 216 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
a2428ae9671c3c4579dacd2a20bcb317194edbadddbdf6828f2c0b6eb9a1ae0f | Java | 6,787 | 164 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
db38bbf649f133026d7607765ee4a6bb5cfba13b1011ff4c47e12de86aefe353 | Java | 6,790 | 186 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
fdba1b9639de976fc600801473502f5b88fb1910891bf4050a4c49adfb3af93f | Java | 6,795 | 154 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
279006bfe017dae01710f2d3afc27c8d2ce459cc8b76e28dce4c56a5dbe25f0c | Java | 6,803 | 143 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
bcb923471b856f46d5dcbec532b1caf12e5b4492290e26dbdabe33fc5e95b0fa | Java | 6,805 | 168 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
25b72eaa0027f7510b4ed23b0470b426f484ceb3800d822571d144c41c7050b4 | Java | 6,830 | 279 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
38eb0f9f4f15d1e122a5e13f4f814f05d922b17fba45ecad0f01f3cb74546053 | Java | 6,831 | 234 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
d18b6cddced60a6eb539b9e4070958a043398e4c91ea53228d4b36804142c6fc | Java | 6,834 | 186 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
eeb23825c9efaa98755f21a4a6d351cb941f9b2070593be0386e33a8da64275f | Java | 6,842 | 186 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
2a2455ebcbdda46e0aff25ef01779e2f2f7fb138c93cc4b8eef94d9fc977fadb | Java | 6,846 | 149 | package edu.cmu.tetrad.search.is;
import edu.cmu.tetrad.graph.EdgeListGraph;
import edu.cmu.tetrad.graph.Graph;
import edu.cmu.tetrad.graph.GraphUtils;
import edu.cmu.tetrad.graph.Node;
import edu.cmu.tetrad.search.Fges;
import edu.cmu.tetrad.search.score.Score;
import java.util.*;
import java.util.concurrent.Concurr... |
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