sha256 stringlengths 64 64 | language stringclasses 28
values | size int32 1 491k | lines int32 1 23.2k | content stringlengths 1 200k |
|---|---|---|---|---|
9d63f2f1385ec68f6d228a74d31db48c05e15897cd154ae128dc6af7b1c2ab57 | Java | 17,895 | 456 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
98a8e842f82c888f2a223d42a42ff2ba636ddfff693fb60b69a70a009d876b1a | Java | 17,909 | 404 | /// ////////////////////////////////////////////////////////////////////////////
// VertexRepairBattery.java //
// //
// Drop-in addition to VertexRepairSimulation.java. //
... |
d89f8755aca0cae4cca832d39efccdec6e09d3b1d88117c9bdd08475ef436cc1 | Java | 17,946 | 455 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
b7c60e5c90f37643c72b548dec8532563aa5ffa02d93018e8945eb5f81459c29 | Java | 17,966 | 425 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
11ec8e023ab07fd0bcb6f86f45e444575ea6c08927d4697318808e9e0737c5da | Java | 18,018 | 458 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
8edfcfd65e1ab5fc3ff21d16a2cb6f05e181ffaa4c5f24455e5b5c230fb99be7 | Java | 18,047 | 493 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
c57df72bfe4e507aaf2b7d744c55dc2ef7ebbc44a08720a496cfc0ee8759a1b2 | Java | 18,072 | 471 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
d6a62c94851f8e2a2d788bdd9f20d9372fe48a4ca756a25c6418d03ab7d6f495 | Java | 18,141 | 428 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2026 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
74ba6cb21f41558ed1e00c2d8361029ace1623ad8698fb500942009157326ca3 | Java | 18,164 | 412 | package edu.cmu.tetrad.search;
import edu.cmu.tetrad.data.ContinuousVariable;
import edu.cmu.tetrad.data.DataSet;
import edu.cmu.tetrad.data.Knowledge;
import edu.cmu.tetrad.graph.*;
import edu.cmu.tetrad.search.test.IndependenceResult;
import edu.cmu.tetrad.search.test.IndependenceTest;
import edu.cmu.tetrad.search.u... |
7b8c9a3b40dbef81c16839345445ab7c6b23e1c5076eed1fb2b1de00521de6c8 | Java | 18,223 | 498 | package edu.cmu.tetradapp.editor;
import edu.cmu.tetrad.graph.*;
import edu.cmu.tetrad.util.NaturalSort;
import edu.cmu.tetrad.util.TMath;
import javax.swing.*;
import javax.swing.table.*;
import java.awt.*;
import java.io.Serial;
import java.util.List;
import java.util.stream.Collectors;
/**
* Apr 30, 2019 2:30:18... |
bddccb21d2ac539a9c51cf22643c2a785ea79a88f04f63df2e26d3158ed68f46 | Java | 18,282 | 517 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
ac542f3900b08fbd9b46d0b0b1b87d1f25446f03744eb1f733006f94a4b63de7 | Java | 18,287 | 518 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
a769eb40530b299a9ead2ad436342c3ea1b9df0b11672fd06cb605d41f814594 | Java | 18,293 | 379 | /// ////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //... |
a575ceca3e7e46e02e9ac506ff8525a25c7c0b8b17f206a7f9a029580f536a3a | Java | 18,305 | 578 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
5d35a245367e218231f3b88ff6bc95689b21c44d4ebbb8131b41548f19cc7bb4 | Java | 18,353 | 522 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
7ac7bffefb415fa38f27449cbb70192b756a2836b763848f3390d59596481d3e | Java | 18,366 | 421 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
3a40afe0bb303e053ae628afcbc852199192aef3efdcd993c2250f9458b6a5cb | Java | 18,396 | 390 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
e425d775dcde0a64bfe7512028d57740f6f1b16aeb3c1bffea795b2eae1976da | Java | 18,399 | 575 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
893afd6e94e9686feae66b8adfd52320cccbbdaa9ef410bb774052b39da0dbbb | Java | 18,410 | 575 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
3074ba40bb39132b3a5af5c3aa6cb77f88c1fa34d1584b8952f2e46633d2f0c0 | Java | 18,428 | 465 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
70d54c7003817c0578184ca23f101e2fa23b1e9c96422ce499d86a8637a4d1de | Java | 18,454 | 393 | package edu.cmu.tetrad.search;
import edu.cmu.tetrad.graph.*;
import edu.cmu.tetrad.search.utils.MagToPag;
import edu.cmu.tetrad.util.RandomUtil;
import java.util.*;
import java.util.concurrent.TimeoutException;
/**
* Differential / equivalence harness for the memoized continuation cache added
* to {@link Recursiv... |
018be43f2c09f65824afa6d8b08148d01500f938970a7ab1ac75b2ef0f53985b | Java | 18,476 | 437 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2026 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
06a29e26d124df69b943473b5a9363336c245c893bbaf895da636ce5a128fd58 | Java | 18,496 | 599 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
2ca15a8dea55e9208ed0be905e51322c0cd6e07c524a0532a083b4cce9a4f881 | Java | 18,619 | 501 | /// ////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //... |
ecf90e69ca1fa080e0eb787a2053d0555ccbb624b62d3786d7cf7a2dd818b799 | Java | 18,624 | 471 | package edu.cmu.tetrad.algcomparison.algorithm.other;
import edu.cmu.tetrad.algcomparison.algorithm.Algorithm;
import edu.cmu.tetrad.annotation.AlgType;
import edu.cmu.tetrad.annotation.Bootstrapping;
import edu.cmu.tetrad.data.DataModel;
import edu.cmu.tetrad.data.DataSet;
import edu.cmu.tetrad.data.DataType;
import ... |
e39f79c64ea759fddc0f06ecdde6cb4835880d5adc2e065a8d0686fd6e1086fd | Java | 18,633 | 482 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
da5cd6d2f701bb34cb3a7aa2ec7ddfb5d16a95856ec0060cd631261a7ed6defb | Java | 18,636 | 772 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
575c535bf5ecde343d8325bfcf1e95d7f7eecbe5bd8df774385d2763ad97b523 | Java | 18,663 | 423 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2026 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //... |
efc9d94b4731ae67bc70bfa0dffa7ab31c91406c34b2c8249535f3f92bc7cfea | Java | 18,680 | 373 | package edu.cmu.tetradapp.editor;
import edu.cmu.tetrad.graph.Edge;
import edu.cmu.tetrad.graph.EdgeListGraph;
import edu.cmu.tetrad.graph.EdgeShading;
import edu.cmu.tetrad.graph.Edges;
import edu.cmu.tetrad.graph.Graph;
import edu.cmu.tetrad.graph.Node;
import edu.cmu.tetrad.sem.CVReport;
import edu.cmu.tetrad.sem.E... |
c18c46b22bb96df1474179e9e565fe534f7aa5af7576a470a5ad21054d14e25c | Java | 18,802 | 542 | package edu.cmu.tetrad.search.test;
import org.apache.commons.math3.distribution.NormalDistribution;
import edu.cmu.tetrad.util.TMath;
import java.util.Arrays;
/**
* Utilities for converting a quadratic-form statistic
*
* Q = sum_i lambda_i * Z_i^2, Z_i ~ N(0,1),
*
* into a p-value using fast analytic tra... |
ea19490676825192022db36457bb14a8a4d2accf8781198486ff74ab3b779519 | Java | 18,857 | 602 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
1f7cf10e154c0bcb8f1c9d35b8a0c190fac7373f25aa6f5e4e2b9f4bdba2cb9b | Java | 18,992 | 521 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
1ec946662438887e2f8b6f9e7ad20fc3c6d72381ed7cce49ed7736847f65117b | Java | 19,016 | 460 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
5c0906691fda289ab2c8615f2d832e04d3fb5a1d852e3a3ed347467ef35cefae | Java | 19,018 | 548 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
3ef37938dc283b42ce945c8a4c2535238764b73918e3590388058d76697c6db7 | Java | 19,029 | 556 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
2f9a72aaa99d5b70d2fae234ac43562318194a1959029b5cf0911885bb6ba5bc | Java | 19,102 | 495 | /// ////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //... |
d9c42a54e857d8434cb77331869f93007cc868fde0036e9d7375d4feda1c25ab | Java | 19,113 | 369 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
0898c3ab0727d6e0ed920eccd9996d5c1ac1210d1171d82169b9be216ad14dd4 | Java | 19,122 | 519 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2026 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
edc50f0118b998e32e53b3d3193db72b4b8c5f4c2f451453c1ec276c71d3656a | Java | 19,149 | 473 | /// ////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //... |
cd60c919c49ae7c32aa347edad667137f3dd023fbe00b29b284fcb206f7b479b | Java | 19,183 | 263 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2026 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
fc3a0d17d302c8d17f4c5db958015698f3df74bacccda19583e781fef6f29bec | Java | 19,246 | 379 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
15b719f5902c0ad061e88d95090670d2bb353b0e670034cfdd8f69831370c7d9 | Java | 19,297 | 606 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
df74420acc8cb6f0aaceebb8c2aaa2298ae12e215aef4e91302d4444c8502d0a | Java | 19,307 | 607 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
7ec0dd23dbeb6e03bd72c55ab0d86af2d43c19e40121c6f754f4973e2a3810c6 | Java | 19,312 | 458 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
8dcc829fbcfacdd96f471c2ce15d179700856cdbc6271102f258ae79bed03feb | Java | 19,312 | 614 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
c4ffe8de7bdd9bc2c803909d2a28577063fee713f7f7732cb158680d4465c628 | Java | 19,328 | 491 | /// ////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //... |
76097c85203681b38db6920e0d3d7b545eb2970eee93623beeeaf141fb264662 | Java | 19,333 | 536 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
14fb6132793397a506e742ab7c5a4294bcb5516608403d312e33de9d931712ac | Java | 19,355 | 576 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
de420df0359c18d5713d2c4bc82c9c9858590ca7929170ba5e7b80fb813a02fe | Java | 19,439 | 367 | ///////////////////////////////////////////////////////////////////////////////
// FcitBenchmarkHarness100.java //
// //
// Benchmark harness for Table 3: 100-node graphs. ... |
a8b698ecb1bfa343bdcc2c33c4de6bf3949f01391fe839515187542afbd0ec5a | Java | 19,449 | 447 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
682214224eba329dea307b18e84236d4ab27a8294305334a6b210ed0d3dbae6d | Java | 19,496 | 532 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
6e2780daf27bb8d8022e696e8526ace6401e49e925d1b1c97c462985fec67f1a | Java | 19,515 | 632 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
cc9e5b9a324762e2f0f8b483836a5523db6901b37b9b558d4999114f469bbcd0 | Java | 19,575 | 373 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
05efa344148a0ebdbe5a588dd2a15f90c4d8295d9fa37b606cc583ed486be725 | Java | 19,646 | 496 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
4bdb8edc197455cd16905a3419b1131117396c4abafd9dde339c624480f0a3ce | Java | 19,696 | 557 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
4ab45776af698052be2e2d6d7ed57cea8d0e0f5522eb19f7dc4a66f440bfcd0a | Java | 19,737 | 578 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
5c65a1a677e613be310c21bb844d2c7f8f24568c9e21e8f45fe467367825b4ec | Java | 19,794 | 602 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
6105be7c7f9c661978313fee7699b1eaf93f773e7f6060910ddbc2b337616ea9 | Java | 19,824 | 304 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2026 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
aa2b5f7dacacc90d3c13b106a3de03032992a84186cf608fa7e6dfc1d2c12e84 | Java | 19,912 | 521 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
4ced690584951064488e2f73d6362f84915844272b29ad0c2355ee9adcac8f18 | Java | 19,996 | 478 | /// ////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //... |
52babc85173ef5ef02b3d320d5c8d63c06333d35ab70bb2502cbc4a02a3a082e | Java | 20,022 | 452 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
b2229865ee9553b84e5e2498540edce2317705e52c3d2cf66b48c16f1ae6e808 | Java | 20,051 | 650 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
55e4ce18f2f8662e1be0f7fe83cf839fcdc48cd186c809e580138fb8d7ee31b9 | Java | 20,111 | 466 | package edu.cmu.tetrad.search;
import edu.cmu.tetrad.data.Knowledge;
import edu.cmu.tetrad.graph.*;
import java.util.*;
/**
* <p>Implements a recursive procedure for constructing candidate separating
* sets between two nodes under PAG semantics.</p>
*
* <p>Given distinct nodes x and y, the algorithm attempts to ... |
1993798b4606b50cf5e542b683928e41f6f4e722b3714b109072f11da39ed461 | Java | 20,117 | 550 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
6096461790e9dc8b2e33118462764d149ebd7d6b63a190295a5ef9c3a1dfbfd5 | Java | 20,124 | 458 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
44865224d3dcf1a2293818cdbd703f0d5ebbf0bface7dbac2fdde6f679075ad3 | Java | 20,137 | 545 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
bb5c710852b7ebf546f7d0e4779e0a6a8ab636421dfbc72333c219abec3e15e8 | Java | 20,158 | 487 | /// ////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //... |
68c7dae6b175fada0be9f840d891bad7d12bc710a6d68aa34d1e01b6512cd205 | Java | 20,184 | 607 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
563613f7627a41d79d0dff9809437f405613ab88cf75419f189c00d595a76897 | Java | 20,217 | 522 | /// ////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //... |
eb019f8f5069305bf54cb997cdb478d9a0306923b3d582e6898550c52f63e418 | Java | 20,218 | 569 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
9eacf97c84cae749ff00ea798c9827066a0e822b9d450bfbc5542001b0aa7262 | Java | 20,227 | 374 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
415b200ff58d5d63bd568eab0f4114b5ab41b6798a90d4a4b9617870c843bd19 | Java | 20,300 | 398 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
ade20d3d82730c1a76a33c4af025738dce0f3a0035559c3d9e6225553ee8d9c8 | Java | 20,347 | 480 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
4be71c9c1f05b437be940271f4ce22ab3843a57547a043564fc022dbf15af74e | Java | 20,409 | 496 | /// ////////////////////////////////////////////////////////////////////////////
// VarsortabilityHarness.java
//
// Tests whether BOSS performance correlates with varsortability — i.e. whether
// BOSS is sensitive to (and potentially exploiting) this simulation artifact.
//
// Design
// ------
// 1. Generate random DA... |
b78612af6231cd3cb10567f4898580b3894930115f26b2f413182cf19fcb62b6 | Java | 20,434 | 501 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
7811cb7a322db0ca954fc95a9b6423423d45a8457254180879330064f003035d | Java | 20,448 | 493 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
99bfe1da8d9789e16aefd9a662e570b8692bd382172850bfe280219744f7587b | Java | 20,548 | 472 | package edu.cmu.tetrad.search.is;
import edu.cmu.tetrad.data.DataSet;
import edu.cmu.tetrad.data.ICovarianceMatrix;
import edu.cmu.tetrad.data.Knowledge;
import edu.cmu.tetrad.data.KnowledgeEdge;
import edu.cmu.tetrad.graph.*;
import edu.cmu.tetrad.search.IGraphSearch;
import edu.cmu.tetrad.search.score.Score;
import ... |
c9ad58ba427bf18febc0320cb888c8ac1bf15e6916b18e5e4edb9383cf5a9859 | Java | 20,569 | 462 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
b7f0fc1f0f3f64424f0365a18514533859dd1498144bd2f8ec1c0e9322260fca | Java | 20,731 | 502 | package edu.cmu.tetrad.search.is;
import edu.cmu.tetrad.data.*;
import edu.cmu.tetrad.graph.Graph;
import edu.cmu.tetrad.graph.GraphUtils;
import edu.cmu.tetrad.graph.IndependenceFact;
import edu.cmu.tetrad.graph.Node;
import edu.cmu.tetrad.search.test.IndependenceResult;
import edu.cmu.tetrad.search.test.Independence... |
9398e5f2128c2ec42803c774f9148ca705f12460fdda25a9608dd70ca192e8c4 | Java | 20,755 | 510 | package edu.cmu.tetradapp.editor.ind_facts;
import edu.cmu.tetrad.util.NaturalSort;
import edu.cmu.tetrad.util.TMath;
import java.util.*;
import java.util.regex.Matcher;
import java.util.regex.Pattern;
import java.util.stream.Collectors;
/**
* IndFacts DSL v0.1 parser + expander.
*
* - One template per line
* - ... |
bb58b3cfb548d33d1be7d7aabe461e4d07675265f1453df347188a42a3ae9d2f | Java | 20,794 | 527 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
3cb68f41ac29cacef70e95817dd0f43de2785a935f28707435ff85122be05488 | Java | 20,808 | 629 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
d3a7aa357611438bc87ddfb12db5bccf7305041b343b9cf9309e0e6538e9cc02 | Java | 20,968 | 423 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
5f1a81131a78dc1f48870053c255a1679f2e5cd5a406d2d0e7ff4d850276e53e | Java | 20,980 | 552 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
ec6c6f19ae0f6e8d8fdcbca678f394fed6c1d2eadcd825a1166b179621dc7168 | Java | 21,035 | 443 | /// ////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //... |
ef11160c3a115351e3afc041b01c07f8d337828aafb3bba2e9905e9e3620f44b | Java | 21,061 | 502 | package edu.cmu.tetrad.hybridcg;
import com.google.gson.Gson;
import com.google.gson.GsonBuilder;
import com.google.gson.JsonArray;
import com.google.gson.JsonElement;
import com.google.gson.JsonObject;
import com.google.gson.JsonParser;
import edu.cmu.tetrad.data.ContinuousVariable;
import edu.cmu.tetrad.data.Discret... |
950a08756e80a1f7b8022d8677afa32483efa1fdbe0fa3784aafccd7e5cdf3d9 | Java | 21,065 | 619 | package edu.cmu.tetrad.search.mimic;
import edu.cmu.tetrad.graph.Edge;
import edu.cmu.tetrad.graph.Edges;
import edu.cmu.tetrad.graph.Graph;
import edu.cmu.tetrad.graph.Node;
import edu.cmu.tetrad.graph.NodeType;
import java.text.DecimalFormat;
import java.util.ArrayList;
import java.util.Collections;
import java.uti... |
461228e66e9d5caee2a2cd7c3dd5cb29fa5d879dc0e173a111e0384dd1d90ab3 | Java | 21,131 | 489 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
a390aa36d6013d752fc7e640dcf840d6f40f3ff33066c285feccd97e4d0a490f | Java | 21,172 | 563 | /// ////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //... |
3a7e24da302d6f4d2925682aeacbf595d6078a70bb8a46679df75fd6d9a7663a | Java | 21,175 | 532 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2026 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
47327ad1d7e9c116f6e4acc3bbe823c7dc84047e5596e297b671bba31e27690f | Java | 21,177 | 652 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
ad7bdada81c262b6a05eaffed3f2434d9c9dba8c387373f0eabf7dcca66e5602 | Java | 21,199 | 584 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
196faa52239924cd51ec5cf3dc330e0010e5a362936a5e88ce25f032035a82f3 | Java | 21,245 | 413 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
f61582b6bfec3c67c5a0f2e0739b3c2369aab27ff4b1c7e9f9520b1e51b67ae3 | Java | 21,394 | 616 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
5a798435dd1389f9d9417c83d8af5915ffb20a1a5dc80165ff48f2606439d15e | Java | 21,422 | 483 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
6fbed56bc69c6f9c4c7f5a3bd1d357c6f3087d69bb610d0fe8d109f6c7508f55 | Java | 21,442 | 695 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
d1ede35a451be362b90f8f509eac97a88fd8314ca21c5460c77dc4cae3ae8092 | Java | 21,453 | 394 | /// ////////////////////////////////////////////////////////////////////////////
// Pke5DeterminismCheck.java //
// //
// PURPOSE. PKE4 and PKE5 disagreed on counts that should be bit-identical... |
ae095d9acf1ff9989901519db940905a780cefa187c838c1677f1a64fca42f8b | Java | 21,509 | 492 | /// ////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //... |
cb1fdaf39e915625a01198ece1f8e860b7e11324f7d83c8fa2e065d3c826598b | Java | 21,515 | 355 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
f2ae7f56df2e525b179c644494e17c739199e5abfa29b3075159f01193891f4e | Java | 21,523 | 555 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
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