sha256 stringlengths 64 64 | language stringclasses 28
values | size int32 1 491k | lines int32 1 23.2k | content stringlengths 1 200k |
|---|---|---|---|---|
a10174dc03643550991f3e84c3c94317034de039e4d7393e8d3f8cb5b57efcc3 | Java | 26,902 | 640 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
ad95a145f86fa7e02a7ad3503f9a7cfd923a121eebb2ef30fb9e94a117eab7d6 | Java | 26,921 | 635 | package edu.cmu.tetrad.search;
import edu.cmu.tetrad.graph.Graph;
import edu.cmu.tetrad.graph.Node;
import edu.cmu.tetrad.graph.NodeType;
import java.util.*;
import java.util.concurrent.TimeoutException;
import static edu.cmu.tetrad.search.RecursiveBlocking.Blockable.BLOCKED;
import static edu.cmu.tetrad.search.Recu... |
6257f5de7c6c85b3f155e229672dcec4dc39232c9563a30b762fc6fc6d1aacab | Java | 26,993 | 695 | package edu.cmu.tetrad.search.test;
import edu.cmu.tetrad.data.DataSet;
import edu.cmu.tetrad.graph.IndependenceFact;
import edu.cmu.tetrad.graph.Node;
import edu.cmu.tetrad.util.RandomUtil;
import edu.cmu.tetrad.util.TetradLogger;
import edu.cmu.tetrad.util.TMath;
import org.ejml.simple.SimpleMatrix;
import java.uti... |
0b468b9def7b8cd286819da87917413811d8a997b9b3efb6538d52a8b2f617fc | Java | 27,112 | 739 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
88b32a0ef348dd360167dcb42536e2d349d6b266abd28fd66cd5a7c52cf93c32 | Java | 27,117 | 520 | /// ////////////////////////////////////////////////////////////////////////////
// PhantomCounterexampleHarness.java //
// //
// Generate-and-test search for a counterexample to the phantom / genuineness... |
d855b8955186f42b5a8053c6176d5fd6d3f37410d5531f62e1849e108bb824ba | Java | 27,161 | 735 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
3404c3a8b884fa066cfe0a5310f6c59e5f472f75a634abbc4e363c4537a95747 | Java | 27,171 | 779 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
f10c2f7f79cc5371a74ab2cf3d8f9366ff060557faf0ae36d847c720e3dca9d9 | Java | 27,206 | 723 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
b1e1891d009c3a36bf3a79ce609fe77b76897a2ade03fcc3d2597e096878daea | Java | 27,238 | 525 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
843c27f0e3bb2762fca4281d93a60a3e08ca04aa85d2cb9706413120c136bd28 | Java | 27,341 | 628 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
e6d488257989d8e6014674e30820b026705d4f2915d622f879e560f5353d50c7 | Java | 27,458 | 522 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
53e252103b6cca77eaa714d2a5cb40b8da41cfaa7722f7dfe530f75ed0e937d9 | Java | 27,638 | 490 | /// ////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //... |
2ea8f878fb51224d3accc3821ecf0c28f663af0cc608320e85445897d8665340 | Java | 27,785 | 624 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2026 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
587ed39da445b19daa0616a639a1a8c6af7bfc044443350f1fe36ed17bd5c605 | Java | 27,815 | 756 | package edu.cmu.tetradapp.editor;
import edu.cmu.tetrad.graph.Graph;
import edu.cmu.tetrad.graph.Node;
import edu.cmu.tetrad.regression.RegressionResult;
import edu.cmu.tetrad.util.NaturalSort;
import edu.cmu.tetrad.util.NumberFormatUtil;
import edu.cmu.tetradapp.model.LinearAdjustmentTotalEffectsModel;
import edu.cmu... |
286c2a329547da8f719a38c0760b5187128cc6704a0a58aecd0ec30b69022f84 | Java | 27,820 | 582 | package edu.cmu.tetrad.search;
import edu.cmu.tetrad.graph.Graph;
import edu.cmu.tetrad.graph.Node;
import edu.cmu.tetrad.graph.NodeType;
import java.util.*;
import java.util.concurrent.TimeoutException;
import static edu.cmu.tetrad.search.RecursiveBlocking.Blockable.BLOCKED;
import static edu.cmu.tetrad.search.Recu... |
b68c73e2f23842268d0604f70d2af5f451b37a1741209d0ffee16a3551938dc6 | Java | 27,895 | 623 | package edu.cmu.tetradapp.editor;
import edu.cmu.tetrad.graph.Graph;
import edu.cmu.tetrad.graph.Node;
import edu.cmu.tetrad.search.GRegression;
import edu.cmu.tetrad.util.NaturalSort;
import edu.cmu.tetrad.util.NumberFormatUtil;
import edu.cmu.tetradapp.model.GRegressionModel;
import edu.cmu.tetradapp.model.GRegressi... |
95e2a6a28e0e42e1e80220a1d89a19462509ac2c31a95b26b42fc7f12d10ccc5 | Java | 27,938 | 641 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
88998291f90a49723206ef948faa291695187591b31093307dfcd740c5c7281d | Java | 28,027 | 771 | /// ////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //... |
1d0564ed45ae0f86b8148c21b07c6af81cb0f01d46ca9720531a14daf28df2b8 | Java | 28,039 | 773 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
8e9e53a73a6b18b863e76ae36b2010e5cf9ab6d7af8a522d9ba9c25efc4dead6 | Java | 28,061 | 663 | package edu.cmu.tetrad.bayes;
import edu.cmu.tetrad.graph.Dag;
import edu.cmu.tetrad.graph.Graph;
import edu.cmu.tetrad.graph.Node;
import java.io.IOException;
import java.io.ObjectInputStream;
import java.io.Serial;
import java.util.List;
/**
* RowSummingExactUpdater-style updater plumbing, but uses JunctionTreeIn... |
e1de8bdebc3e65f6d58fb4a0a3fc47c6a955aa37a798d83ee1fd09966bf85c4e | Java | 28,076 | 924 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
a95ce290403bcfaa5bfa5c4e451a37e36be2fbfdffb0f802cd639609d3136ae8 | Java | 28,107 | 676 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
b0d89f94d27a06a0870c70a1db4655d71567dd592bd09233ddb34474b5c139ad | Java | 28,136 | 688 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
cfb8da4deff75810c0c454a96a0bb7c77686c3913108c90a9ebc9347cf47b6b8 | Java | 28,172 | 702 | package edu.cmu.tetradapp.model;
import edu.cmu.tetrad.algcomparison.simulation.SemSimulation;
import edu.cmu.tetrad.data.CovarianceMatrix;
import edu.cmu.tetrad.data.DataSet;
import edu.cmu.tetrad.data.Knowledge;
import edu.cmu.tetrad.graph.Edge;
import edu.cmu.tetrad.graph.EdgeListGraph;
import edu.cmu.tetrad.graph.... |
532d9282e573f8a2f63a72653a3b3d093fdb91bbb7ced118ff9149de7b016023 | Java | 28,208 | 663 | package edu.cmu.tetrad.bayes;
import edu.cmu.tetrad.graph.Dag;
import edu.cmu.tetrad.graph.Graph;
import edu.cmu.tetrad.graph.Node;
import java.io.IOException;
import java.io.ObjectInputStream;
import java.io.Serial;
import java.util.List;
/**
* RowSummingExactUpdater-style updater plumbing, but uses VariableElimin... |
e48289cee5c7970aee310e511e5670f06af528c1048e6c5ce53381570f29c363 | Java | 28,218 | 783 | package edu.cmu.tetrad.search.score;
import edu.cmu.tetrad.data.DataModel;
import edu.cmu.tetrad.data.DataSet;
import edu.cmu.tetrad.graph.Node;
import edu.cmu.tetrad.util.EffectiveSampleSizeSettable;
import edu.cmu.tetrad.util.TetradLogger;
import edu.cmu.tetrad.util.TMath;
import org.ejml.data.DMatrixRMaj;
import or... |
2e301b25b075c76e834baf13d0ee6955f4ffbe5a15d2e2955f29cf0c5883752a | Java | 28,250 | 699 | package edu.cmu.tetrad.data;
import edu.cmu.tetrad.graph.Node;
import java.util.*;
/**
* Model for a conditional histogram for mixed continuous and discrete variables.
*
* Drop-in replacement with optional x-axis bounds for continuous targets.
*
* @author josephramsey
*/
public class Histogram {
private f... |
365c56c78094b43583b5fdf541ffa2fe7b087894d46cc243d734e06d2de87f77 | Java | 28,259 | 783 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
c044fb215e02a68c8d1c408dcdd7938b3823e769bbd12401d33842d53c3bc50a | Java | 28,276 | 630 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2026 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
34cc1d84f8f313155dc55ab2cd531ad66c2369894f9c2d65c4e1d2d3cff49c94 | Java | 28,281 | 755 | package edu.cmu.tetradapp.editor.datamanip;
import edu.cmu.tetrad.data.DataSet;
import edu.cmu.tetrad.graph.Node;
import edu.cmu.tetrad.util.JOptionUtils;
import edu.cmu.tetradapp.model.datamanip.DataSubsetter;
import edu.cmu.tetradapp.util.IntTextField;
import edu.cmu.tetrad.util.TMath;
import javax.swing.*;
import ... |
1a3fee7a9a3c71c3e76b2cd9a69f8847743dcb685ad69c1e1c7d1c9192d9b925 | Java | 28,380 | 546 | /// ////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //... |
3411bd959ba064be01a0b6f1e4b7c49ec20e4d57bd39efe911d9168adf134cc1 | Java | 28,431 | 663 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
8ebf2970fa152892d98cd201432c860146e0d6cafa0990b0c539a7de9ad75659 | Java | 28,505 | 603 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
db97d6640da538c78b1bf58a8f6284b04c8228936d9e3598eda189997feaf8ae | Java | 28,705 | 556 | /// ////////////////////////////////////////////////////////////////////////////
// Simulation study for VertexRepairSearch. //
// //
// Runs VertexRepairSearch starting from four different initial graphs //... |
0ec66a60e3d8324f4dc369daf8e715386afcd1f3a9ac8debfc3ecee7724c5e21 | Java | 28,739 | 560 | /// ////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //... |
def6d07cf103163bcd8a288ed6e67a00c16e697e0a8a0094a30a9f8d7915a741 | Java | 28,945 | 816 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
8ea53fc45ba5c19a2cc2a8057c071736cc94438abc45f39a43ba4daa3cf02ea3 | Java | 28,984 | 829 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
5a61794cc281d96f09a39ab4bd76b5222b6c71697a8ac98d2694583bf9576ea1 | Java | 29,048 | 830 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
8b94c6786005fd3a7d2734e585cc4e4782ed3e05bd9b077cebf3207641f931c9 | Java | 29,384 | 630 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
d4b55c8e1a558b942e0780aee8a11db6c63fba4e9d0273ac19dfcb524f6043cb | Java | 29,478 | 848 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
cd1e7c2132e1e9e61bb5e619ffd996a58cab6506b293c3a28931d2a706c8f6e5 | Java | 29,482 | 785 | package edu.cmu.tetradapp.editor;
import edu.cmu.tetrad.bayes.*;
import edu.cmu.tetrad.data.DiscreteVariable;
import edu.cmu.tetrad.graph.Node;
import edu.cmu.tetrad.util.Parameters;
import edu.cmu.tetradapp.model.TextBayesUpdateModel;
import edu.cmu.tetrad.util.TMath;
import javax.swing.*;
import javax.swing.table.A... |
ada328a69702b7abbd4cee6e8892c3d39285fedc7d6b3eb8799e649b11d5bd00 | Java | 29,558 | 887 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
5382dafc21e99c15f8e8238ab11fec843549b20c8986e69cbdf23072c89aeca4 | Java | 29,562 | 774 | /// ////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2026 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //... |
425efce239e235690c2c7f1f94109454cf1d495b6a80a82c63888a7bd5449daf | Java | 29,679 | 728 | /// ////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //... |
c2c265fa5445d95b210219cfd0fa4df4da4275df5caaafafac9ab5fa1fe604e1 | Java | 29,848 | 670 | package edu.cmu.tetrad.search;
import edu.cmu.tetrad.data.Knowledge;
import edu.cmu.tetrad.graph.Graph;
import edu.cmu.tetrad.graph.Node;
import edu.cmu.tetrad.graph.NodeType;
import edu.cmu.tetrad.util.TMath;
import java.io.PrintStream;
import java.util.*;
/**
* The {@code RecursiveBlocking} class implements a rec... |
d8b799d0ec56c6e85534ae3b84b995881172d2685f4c0955b5befca99ef1b0a0 | Java | 29,998 | 700 | package edu.cmu.tetradapp.editor;
import edu.cmu.tetrad.data.DataSet;
import edu.cmu.tetrad.graph.Graph;
import edu.cmu.tetrad.graph.Node;
import edu.cmu.tetrad.hybridcg.HybridCgModel.HybridCgPm;
import edu.cmu.tetradapp.model.HybridCgPmWrapper;
import edu.cmu.tetrad.util.Parameters;
import edu.cmu.tetrad.util.TMath;
... |
bb21d63c515bddacb54684f5523e161b44c450cb292f6a33c14d6fcb910def43 | Java | 30,048 | 803 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Gly... |
255da7d2186f57064df3760a2a9ce47336bdfaa6113de9ca9176e6c5ca7fa99a | Java | 30,065 | 824 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
373ab0e29999d70cac0d4a3e043f1e7f7bacc8c6de9e1defa9daf592b3ae5866 | Java | 30,336 | 854 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
db87a768052e469f57e30e82c7aa8c621d862ae607b3ec424c2a792a5d87530b | Java | 30,452 | 850 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
0efcf36ffe48bb13338bfc7a8c626c68972b2da67a7ec2ead59ec3b7bda45ac2 | Java | 30,456 | 697 | /// ////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, ... |
0d7160bf334980ed4c716b8baeb504ce7c5091be4b0f25fafb5f482dd2672bd3 | Java | 30,640 | 881 | /// ////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //... |
29e39b5bc437ab1b928fcbaa6f8f79ded00b6bc154e09cfb76198dcc6e03779c | Java | 30,645 | 688 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
ba70a6853561a6bdff235a6bf2039a84923290fda0a3252cee5ce0b9746ce508 | Java | 30,701 | 734 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
d0b6966b6482b586e36f7d90cba651110e307b515f97b457cb34d78d3529aba9 | Java | 30,715 | 618 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
520dd156df04de93eb29d980d0b961fc85643b8473bb07c8a30c152d711b4a86 | Java | 30,751 | 775 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
28d943b8fa0560494606c45206113b1e5578eb2a066a5cdf6993a81bd85755ab | Java | 30,759 | 760 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
3e542425ac9be61e71a8b300c8281a6e9c72b094db8798fd95a5ded90b59fc39 | Java | 30,830 | 692 | /// ////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //... |
f20b379484848b0ceb7ac52b76ba5751520393bc7eb9c221208edbeae64be584 | Java | 30,855 | 748 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
53faf0d2602c7fc8f40cc63d28fd79630a156594279bcd96ef21660b94f7771c | Java | 30,863 | 701 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2026 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
6d12155eba232823882f421523b111bb0bb6ba150c55846c0e1b4aacfdb3d86f | Java | 30,907 | 716 | /// ////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //... |
4e06a82cf7868cebc3f2c5f83b2df581162e8c905d94b5702fc60402d8cd270d | Java | 30,964 | 713 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
ddc149c5c60324abc19a6a2f993f1cb8376a9c731593aafc7ba955b91a189e8e | Java | 31,036 | 725 | package edu.cmu.tetradapp.editor;
import edu.cmu.tetrad.graph.Edge;
import edu.cmu.tetrad.graph.Edges;
import edu.cmu.tetrad.graph.Node;
import edu.cmu.tetrad.hybridcg.HybridCgEdgeSignificance;
import edu.cmu.tetrad.hybridcg.HybridCgIo;
import edu.cmu.tetrad.hybridcg.HybridCgModel.HybridCgIm;
import edu.cmu.tetrad.hyb... |
e138e48e5ef9ad41483e08d5a62eabfba2b73519ca645257b0bd2e543c27363a | Java | 31,318 | 878 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
b18dd5edc249ac1b68130c3916aea40334d2700cefb5ff7856eed1e3b3192d03 | Java | 31,518 | 882 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
99a70f972f913ee2cf71101615fc56a8ae2c23688229f5b422b65099cf1cb9bd | Java | 31,594 | 880 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
5afbebd4553e17b90790a014162774ee619b93e178963017094495fa4a7fadb4 | Java | 31,650 | 731 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2026 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
2d246bf3b74ead82dedc7de237f94b4d5fdb5804164128068854fa03bcfc178f | Java | 31,744 | 762 | package edu.cmu.tetrad.search;
import edu.cmu.tetrad.graph.Edge;
import edu.cmu.tetrad.graph.Edges;
import edu.cmu.tetrad.graph.Graph;
import edu.cmu.tetrad.graph.Node;
import edu.cmu.tetrad.util.TMath;
import javax.annotation.Nullable;
import java.util.*;
/**
* Recursive adjustment for the case of multiple treatme... |
932192f4db4dba411d2e5d00b762fd5b62e7940a7905c754841d5b2dfaaa48bf | Java | 31,947 | 892 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
ace2238e8e1550115cb6560e50614436dfb617cf2fbba822f7487d79ca2dc9da | Java | 31,961 | 775 | /// ////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //... |
c3c93ab66171467a495998eda5d3823feec5e4efadc8abf1046a281ad66d2018 | Java | 32,027 | 788 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
748da073001bcc346be2ea85e325ce92dd5e63ebaa713efe5c55bed65b554a2d | Java | 32,209 | 699 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
cf889267f1de360461499ddaba19e00f03fba2371016df373c5347c6fa126948 | Java | 32,231 | 789 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
46c54e6335c06704b4d0376874b38662f62d29f1fb43767767ec453c532b2446 | Java | 32,446 | 760 | /// ////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //... |
38d136c03ab9339f8137876d03493a0061a0157e27e329b54fa41695a18d0086 | Java | 32,472 | 621 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
a5b1659e310fc20a737bd75cb121655f538f3d630cfa5598adb4d7a87dced432 | Java | 32,525 | 760 | package edu.cmu.tetrad.search;
import edu.cmu.tetrad.graph.Endpoint;
import edu.cmu.tetrad.graph.Graph;
import edu.cmu.tetrad.graph.Node;
import edu.cmu.tetrad.graph.NodeType;
import java.util.*;
import java.util.concurrent.TimeoutException;
import static edu.cmu.tetrad.search.RecursiveBlocking.Blockable.BLOCKED;
im... |
7b6c275a9242b9f53a46f212d6f8e88179d7e6bace281f915c9329e636be6211 | Java | 32,615 | 892 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
9abd097930cae767bb792d7cc56028f8e1cdfc79cdd4c91ca752f509bbfd6038 | Java | 33,023 | 918 | package edu.cmu.tetradapp.model;
import edu.cmu.tetrad.algcomparison.simulation.SemSimulation;
import edu.cmu.tetrad.data.DataSet;
import edu.cmu.tetrad.data.DiscreteVariable;
import edu.cmu.tetrad.graph.*;
import edu.cmu.tetrad.regression.Regression;
import edu.cmu.tetrad.regression.RegressionDataset;
import edu.cmu.... |
22dfa86a3a5fb7a2af576b2b8e322e2ff84eea1df0f8a34026fc1722937ef882 | Java | 33,069 | 791 | /// ////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //... |
a8d5e1e0086bdfaa01d296a7af6ed0679b231d5e2a51ee49342a4309142adfc9 | Java | 33,076 | 1,002 | /// ////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //... |
89e4a009e57e876f1612f02315eab33473bed2a0840e76c101491469fda98907 | Java | 33,395 | 569 | /// ////////////////////////////////////////////////////////////////////////////
// PhantomKernelSampler.java //
// //
// Random-sampling variant of PhantomKernelEnumerator. It ke... |
77a90368dd50d2e90bbe8af88fd1f45b10ddf7803fd276b4388262543785902b | Java | 33,493 | 981 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
bc8fd0d8ee70a336959da77aade4614a3d7fcce6f5133eac4676386ceb499fd4 | Java | 33,502 | 918 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
8c2553f06a226559cd4d0888967189017823355f28ec0e98c0febe6463f9da36 | Java | 33,503 | 833 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
5944d12d6273c90a9a7f6a55bbf21d76c50588ecca7164ba765cdcc172bda9d0 | Java | 33,549 | 739 | /*
*Programmer: Zhenming Zhao
*Date: 02/06/2003
*
*Purpose: To serve as a worksheet processing program which can modify the
* the values based on user requirements.
*
*Usage:
* java Origin **input**.txt **output**.txt interval exponentail(2/3)
*
*Algorithm:
*
*1. User inputs 4 arguments: the proces... |
27cd25c7559a4dd6710edeb8c4394af1c9ebec8ff175521164aee7009844e686 | Java | 33,585 | 818 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2026 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
9745f09c8b12a204cb36a2c8784183db5513519bd1f2830f98364ef6616eca51 | Java | 33,679 | 695 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
63afb07a9c69b41b22a5894a330eb1f4c18d18d17c71961bfdc2c2289fc88cfd | Java | 33,721 | 764 | /// ////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //... |
d57f871b3014a0e5bcd2f09503a14348f09bc702548ffe0cd12b66b89fa1274d | Java | 33,756 | 968 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
dc18c70726bbbca7da74922582e94741817925f1908ea3fb663f318612c62c49 | Java | 33,776 | 1,034 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
ea7b1bfa820e58f26d250576c87e9c21be4f026a0aef3d7a0b7e48c91fc96782 | Java | 33,867 | 1,220 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
7199e8de01726d6dc0567e5759996c59f16fafcf7e1121db283b3ef0620e6de8 | Java | 33,890 | 978 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
80ef3b5a88b5c53b553d3fb8db595f9d99629c311d5721b877cccef756f4be2a | Java | 33,906 | 986 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
9273274f96644a0c068de68bc49531a8f4af351f2c28b705e6e94a8c9d1fc990 | Java | 34,108 | 954 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
457f89218d3c87896a66b2dccd006b1b1e18b8d8ff2e7fd11b2e1d9ea3636c5b | Java | 34,130 | 937 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
a7029160ce5dc9d8b05b68fa72aaf348810f2f8c9585312593da8992b76132ac | Java | 34,484 | 816 | package edu.cmu.tetrad.search;
import edu.cmu.tetrad.data.*;
import edu.cmu.tetrad.graph.Graph;
import edu.cmu.tetrad.graph.GraphUtils;
import edu.cmu.tetrad.graph.Node;
import edu.cmu.tetrad.search.test.IndependenceResult;
import edu.cmu.tetrad.search.test.IndependenceTest;
import edu.cmu.tetrad.search.utils.MeekRule... |
3f3d6a6c9d03a8b1d1bb2ac33053acbbd707a461fc4aab9ed0f18bff3ef8095c | Java | 34,525 | 958 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
f30a1aace8d8c1ee0fcef4e07fbdb176062633d756ba9c47d2245b82113a4bcb | Java | 34,605 | 952 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2026 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
db973475645e40e214852d6948874356de5e8779e336601aa382bb269fa7555a | Java | 34,632 | 1,054 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
1cc870c13512bcc553339542e8069bf632585f51d9e113ba7f32e5700d32366a | Java | 34,730 | 759 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
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