sha256 stringlengths 64 64 | language stringclasses 28
values | size int32 1 491k | lines int32 1 23.2k | content stringlengths 1 200k |
|---|---|---|---|---|
d90b3cf7100927378e3997391a16fad09c7921a8bbc6c299ce882f3fbcc1e26c | MATLAB | 521 | 16 | % List of open inputs
% Smooth: Images to Smooth - cfg_files
% Written by Nanbo Sun and CBIG under MIT license: https://github.com/ThomasYeoLab/CBIG/blob/master/LICENSE.md
addpath(spm_dir)
nrun = 1; % enter the number of runs here
jobfile = {[script_dir '/CBIG_MMLDA_smooth_job.m']};
jobs = repmat(jobfile, 1, nrun);
in... |
dacc251a884e8480ee5b291f587a13a3872b63c15e3c5160903a90aaff28f43e | MATLAB | 521 | 18 | function [isFieldResult, substruct] = fieldInStruct (inStruct, fieldName)
% inStruct is the name of the structure or an array of structures to search
% fieldName is the name of the field for which the function searches
isFieldResult = 0;
substruct = NaN;
f = fieldnames(inStruct(1));
for i=1:length(f)
if(strcmp(f{i},str... |
db9492a2c1807c921332410e8100928ddc722a919cc225ced66d537d32907f8b | MATLAB | 521 | 29 | function alpha = circ_axial(alpha, p)
%
% alpha = circ_axial(alpha, p)
% Transforms p-axial data to a common scale.
%
% Input:
% alpha sample of angles in radians
% [p number of modes]
%
% Output:
% alpha transformed data
%
% PHB 2009
%
% References:
% Statistical analysis of circular data, N. I. F... |
2b7190f3198db5a1ed88e9b7eed4a5c70f52514b348fbff36409abc6feb90d64 | MATLAB | 522 | 22 | function clu = updateclu(clu,ix,newclu)
% updates identities in parts of a clu file
%% INPUTS
% clu - N x 1 vector of cluster identities for each extracted waveform
% ix - M x 1 vector of indices where new identities will be assigned
% newclu - integer value for the new cluster identity
%% OUTPUTS
% clu - N x 1 vect... |
5d625b590f8b5c39821fbbc9028b65e3486a20965b69b0de39c9780dc2cf5c54 | MATLAB | 522 | 12 | function mycolor = ea_explorer_value2color(value,colormap,coloraxis)
minval = coloraxis(1);
maxval = coloraxis(2);
diffval = coloraxis(2)-coloraxis(1);
coloridx = round((value-minval) .* ((size(colormap,1)-1)/diffval)+1);
coloridx(coloridx < 1) = 1;
coloridx(coloridx > s... |
6b1331c49b01f0591d3380c8e8ad2c2e10645fa83dc4c4ad465806ab91cfff86 | MATLAB | 522 | 18 | % Compute the total degree, in-degree and out-degree of a graph based on
% the adjacency matrix; should produce weighted degrees, if the input matrix is weighted
% INPUTS: adjacency matrix
% OUTPUTS: degree, indegree and outdegree sequences
% GB, Last Updated: October 2, 2009
function [deg,indeg,outdeg]=degrees(adj)
... |
b3774a72635f6dbc9591a765d29643e5ed9e26b435de184be953e2bb4b806dc9 | MATLAB | 522 | 12 | function control_max_eig = bin_shuffling(SpikeCount,number_of_surrogates)
control_max_eig=zeros(1,number_of_surrogates);
for surr_idx = 1:number_of_surrogates
ControlSpikeCount=zeros(size(SpikeCount));
for neuron_idx = 1:size(SpikeCount,1)
ControlSpikeCount(neuron_idx,:) = SpikeCount(neuron_idx,r... |
d70bd40078a429d106fe9586083c10405ed3321e702546c51c454c715b2c7eb3 | MATLAB | 523 | 25 | function mat = SmoothMat(mat, kernel_size, std)
%
% Smooths matrix by convolving with 2d gaussian of size
% kernel_size=[bins_x bins_y] and standard deviation 'std'
%
% if std==0, just returns mat
%
% 10 december 2009 andrew
if nargin<3
std=1;
end
if std == 0, return; end
[Xgrid,Ygrid]=meshgrid(-kernel_size(1)/2... |
fbb25ce641949aa37b143e4243e03189c5e17b817cbeda7b8331e227b604edfd | MATLAB | 523 | 13 | function a = ne( x, y )
% Disciplined convex/geometric programming information for NE (~=):
% Not-equal constraints violate both the DCP and DGP rulesets. Thus
% not-equal expressions may only appear in CVX models when both
% sides are constant.
b = newcnstr( evalin( 'caller', 'cvx_problem', '[]' ),... |
e1719acebe2982d516db165be0e47aa965f956db753ff1e7a46ba1a492be76d7 | MATLAB | 524 | 21 | function out = isnan(fa)
% Convert to numeric form
% FORMAT isnan(fa)
% fa - a file_array
% _______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
%
% $Id: isnan.m 1301 2008-04-03 13:21:44Z john $
bs = 10240;
m = size(fa);
fa = reshape(f... |
b3246c2b3591e39de9bd24775a7850a841f99b16dd84d930d0e456655c5754bc | MATLAB | 525 | 21 | function cvx_optval = sigma_max( x )
%SIGMA_MAX Internal cvx version.
narginchk(1,1);
if ndims( x ) > 2, %#ok
error( 'lambda_max is not defined for N-D arrays.' );
elseif ~cvx_isaffine( x ),
error( 'Input must be affine.' );
end
%
% Construct problem
%
[ m, n ] = size( x );
cvx_optval = lambda_max( [ zer... |
069c80fcb3aabf52a7e4da50a1824bec622e166fe6c8a8a9c0ee4ec69829a728 | MATLAB | 526 | 11 | function Handle = GCO_Create(NumSites,NumLabels)
% GCO_Create Create a GCoptimization object.
% Handle = GCO_Create(NumSites,NumLabels) creates a new GCoptimization
% object and returns a 'handle' to uniquely identify it.
% Call GCO_Delete(Handle) to delete the object and free its memory.
% Call GCO... |
3e62334c83241624ba720221a8c149ebaafb0882b920a836b27c0b7ffad8b9a8 | MATLAB | 526 | 13 |
function a = rocScoreSaliencyVsFixations( salmap , X , Y , origimgsize )
%
% outputs ROC Area-Under-Curve Score between a saliency map and fixations.
%
% salmap : a saliency map
% X : vector of X locations of fixations in original image coordinates
% Y : vector of Y locations of fixat... |
5150095fadc847142af6596a9085ca4f9ada955ba4db00b9b4ecc9106f224192 | MATLAB | 526 | 26 | function ax=plotcolouredROIs(ax,ROIs,templates,facecolours,tempnum)
[~,numROIs]=size(ROIs);
[Ypix,Xpix]=size(templates{1});
axes(ax);
hold on;
imagesc(templates{tempnum});
colormap('gray');
for k=1:numROIs
currROI=reshape(ROIs(:,k),[Ypix,Xpix]);
B=bwboundaries(currROI);
for n=1:length(B)
bou... |
cb62c06bef5b7f0a9b00ec1e760e5a2b3a358fe1542c094a9a622e5ac743ac97 | MATLAB | 526 | 16 | function [CFCdata,bandRef,bandRefInd] = getBinaryClassifiersCFC(blockTagsAC,blockDatasetAC,mode,folderpath,featureNum)
classes = ['OC';'OH';'OW';'CH';'CW';'HW'];
if mode == 0%Power
[CFCdata,bandRef,bandRefInd] = CFCwithCOH(blockDatasetAC);
else%Phase
[CFCdata,bandRef,bandRefInd] = CFCwithISPC(blockDatasetAC);
e... |
9ce3e410d5bb65bf02fb6a1359f681bfc1f566431f78981e7137d8cb5e6ee651 | MATLAB | 527 | 14 | function varargout = Ent_Permu(varargin)
%ENT_PERMU (deprecated) Use ent_permu instead.
% Ent_Permu has been renamed to ent_permu. This shim forwards every argument and
% output unchanged, so existing scripts keep working, and warns once per
% session.
%
% Silence with: warning('off','Ent_Permu:deprecated')
%
%... |
cfe15c229517a6bc1689e007d0818faa826501cbd7e305ca7112f9eab4358fa7 | MATLAB | 527 | 14 | function varargout = Ent_xSamp(varargin)
%ENT_XSAMP (deprecated) Use ent_xsamp instead.
% Ent_xSamp has been renamed to ent_xsamp. This shim forwards every argument and
% output unchanged, so existing scripts keep working, and warns once per
% session.
%
% Silence with: warning('off','Ent_xSamp:deprecated')
%
%... |
04ee7ba0b1d4f4e6f8b194ddda62e17bad51468f9a099e634d2378170f2ba815 | MATLAB | 528 | 21 | function C=PointToClosestPointOnPlane(A,B,C,P)
% C = PointToClosestPointOnPlane(A,B,C,P)
%
% inputs,
% A,B,C : Points (x,y,z) describing a plane
% P : A certain (x,y,z) point
%
% outputs,
% C : Point on the plane which is closest to point P
%
% Calculate normal of triangle
N = cross(A-C,B-C); N=N.... |
0cca084add0850b0a545fe2025280673d22de91765739c74a96d471681777e51 | MATLAB | 528 | 18 | function data_normalized = calc_normalize_timeseries(data)
% calc_normalize_timeseries.m
%
% Normalize timeseries with respect to mean and std
%
% Input: data : fMRI data [TxN]
% T = length of time
% N = number of points
%
% Output: data_normalized : norma... |
51cd4fbcfd37dd86cc2d2c9b8bf21b926bec9c5a6df25284c3b26420da4a5905 | MATLAB | 529 | 31 | % load a trial of mic data
% 1000 Hz sample rate assumed
% load(trialname);
%
% figure; plot(trial)
figure; spectrogram(micdata(1,:),500,250,'yaxis')
% figure; spectrogram(micdata_f3e2(2,:),500,250,'yaxis')
%%
[b a] = butter(4,[360 440]/1000);
filttrial = filtfilt(b,a,micdata(1,:)); %trial);
figu... |
8c6ea3b379578f2b1ce02c564ce0d8a2ba6b2aa0a57da14e9f354c2484f90456 | MATLAB | 529 | 22 | function I = Gauss_smoothing_3D(I, fwhm, gauss_std)
% Function to apply a 3D smoothing to the image I with Gaussian kernel of defined FWHM,
% or given standard deviation gauss_std
%
% Author:
% Dr. Marco Palombo
% Cardiff University Brain Research Imaging Centre (CUBRIC)
% Cardiff University, UK
% 8th December 2021
% ... |
e2f437248caf420d8331c19ee4f1ed484b2fb24a3b4738d099bed4abea28a8b6 | MATLAB | 529 | 19 | files = dir('*stack.mat');
for i = 1:length(files)
load(files(i).name);
res(i).cameradirection = cameradirection;
res(i).flightstate = flightstate;
res(i).leftstack = leftstack;
res(i).rightstack = rightstack;
res(i).rawstack = rawstack;
res(i).turns = turns;
res(i).flyexp = [... |
70c45478df52e54a634097e107f553544d10a4b5754cd8b2b6a3b28a33482c91 | MATLAB | 530 | 13 | function y = real( x )
% Disciplined convex/geometric programming information for REAL:
% REAL(X) may be freely applied to any CVX expression. However,
% since REAL(X)=X for all real expressions (including convex,
% concave, log-convex, and log-concave), it is only useful in
% the complex affine ... |
d50dcee4839eb2e5d457b9457f534fed67673386054b5bcd98dd7b491ac56a9f | MATLAB | 530 | 23 | function y = pos( x )
% POS Positive part.
% POS(X) = MAX(X,0). X must be real.
%
% Disciplined convex programming information:
% POS(X) is convex and nondecreasing in X. Thus when used in CVX
% expressions, X must be convex (or affine).
narginchk(1,1);
if ~isreal( x ),
error( 'Argument must ... |
4059d558d5ce5af084b43e14dce1c9c1a998d87fa0b6e2b750be1d0b0a28cf03 | MATLAB | 532 | 19 | function y = end( x, k, n )
%Disciplined convex/geometric programming information for END:
% The use of END as an array subscript (e.g., X(:,end)) is identical
% with CVX variables as it is for numeric vectors and arrays.
sz = size( x );
nz = length( sz );
if k > nz,
y = 1;
elseif k < n || nz <= n,
y = sz... |
48d3930701caad131fc89f179d8451be37fd845b3dd2a7c9e36a57a88ea77037 | MATLAB | 532 | 14 | function varargout = setradius(varargin)
%SETRADIUS (deprecated) Use set_radius instead.
% setradius has been renamed to set_radius. This shim forwards every argument and
% output unchanged, so existing scripts keep working, and warns once per
% session.
%
% Silence with: warning('off','setradius:deprecated')
%... |
9594b8979ead1704a16e11e1bcdf0d96f80142885685d347ba42823b96eaa89a | MATLAB | 532 | 18 | %% Example 1b to visualize topic model results
% This example shows how to visualize topics in a 2D map.
%
% load a document-topic count matrix saved for the nips dataset
load 'ldasingle_psychreview';
load 'words_psychreview';
%%
% extract the topics in a cell array of strings
[S]=WriteTopics( WP,BETA,WO,5,... |
dc1588964784661fdcff84a2465a781d1a751c1fef3be773801b1597db0ffbcb | MATLAB | 532 | 26 | A=xlsread('power.xlsx');
[r,c]=size(A);
for i=1:c
temp=A(:,i);
ymax=1;%Òª¹éÒ»µÄ·¶Î§µÄ×î´óÖµ
ymin=0; %Òª¹éÒ»µÄ·¶Î§µÄ×îСֵ
xmax=max(temp);%ËùÓÐÊý¾ÝÖÐ×î´óµÄ
xmin=min(temp);%ËùÓÐÊý¾ÝÖÐ×îСµÄ
for j=1:r
B(j,i)=((ymax-ymin)*(temp(j)-xmin)/(xmax-xmin)+ymin);
end
B(:,i)=B(:,i)-B(1... |
cc005f3fdd3f1a4d0dc553c603c629b2b5a522742ee364c8144c45ef334c48fc | MATLAB | 533 | 17 | function y = pow_abs( x, p )
%POW_ABS Internal cvx version.
narginchk(2,2);
if ~cvx_isconstant( p ),
error( 'Second argument must be constant.' );
elseif ~isreal( p ),
error( 'Second argument must be real.' );
elseif any( cvx_constant( p(:) ) < 1 ),
error( 'Second argument must be greater than or equal ... |
eb30972aa773310579cc8eed101dbe3a63dd94f1d95b113851a0638f841241d1 | MATLAB | 533 | 11 | function cifti = ciftiopen(filename, varargin)
%function cifti = ciftiopen(filename, ...)
% Compatibility wrapper for cifti_read.
wbcmd = 'wb_command'; %don't require a second argument, default to whatever is on PATH
if ~isempty(varargin)
wbcmd = varargin{1}; %use the specified wb_command for ... |
f03a692e014d505da9c688cdcaaa3f85b6f2c9ac00a508620b27596dbec866d9 | MATLAB | 533 | 19 | % Local Regression and Likelihood, Figure 6.6.
% Author: Catherine Loader
%
% Penny data, piecewise smoothing.
%
load penny;
u = find(year <= 1958);
fit1 = locfit(year(u),thickness(u),'alpha',[0 10],'deg',1);
u = find((year>1958) & (year <= 1974));
fit2 = locfit(year(u),thickness(u),'alpha',[0 10],'deg',1);
... |
65341f0739a234e8c47a1cd057ed0fe7e7e57de621c89992ec8f49ace5a01289 | MATLAB | 535 | 23 | % Local Regression and Likelihood, Figure 1.2.
%
% Spencer's mortality data, 15- and 21-point rules.
% Doesn't use locfit!
load spencer;
figure('Name','fig1_2a: Spencer mortality data');
plot(age,mortality,'o');
title('15-point rule');
xlabel('Age (Years)');
ylabel('Mortality Rate');
hold on;
plot(age,spence15(mortal... |
763ef469c0e8e98ced930af54d41bc1159f038643c7bd2d7980ad0b9ade3a957 | MATLAB | 535 | 25 | function hideAxesExceptBox(ax, boxWidth)
narginchk(1, 2);
if nargin < 2
boxWidth = 5;
end
for index = 1:numel(ax)
title(ax(index), '');
xlabel(ax(index), '');
ylabel(ax(index), '');
ax(index).TickLength = [0, 0];
ax(index).XTick = [];
ax(index).... |
fe5c64d1866241fb13a9afd133dc3794a427f422bfde262264bd7c570cc02615 | MATLAB | 535 | 20 | function seldir = LeG_lastDir(dialogtitle)
saveddir = fullfile(fileparts(which('LeG_lastDir.m')),'LeG_lastDir.txt');
startdir = '';
if exist(saveddir,'file')
fid = fopen(saveddir,'r'); %read only
startdir = fscanf(fid,'%s');
fclose(fid);
end
if ~exist(startdir,'dir') || length(startdir)<=1
... |
24a8ea980756aa59bf6cf40847f8f745ea5707ee22aaa3f7615d5bd883389209 | MATLAB | 536 | 24 | function Faces=GetRemainingFaces(T,F,V)
Faces1=T(:,[3 2 1]);
Faces2=T(:,[2 4 1]);
Faces3=T(:,[4 3 1]);
Faces4=T(:,[4 2 3]);
Faces=[Faces1;Faces2;Faces3;Faces4;F];
FacesS=sort(Faces,2);
Faces=[FacesS(:,1)*(size(V,1)^2)+FacesS(:,2)*size(V,1)+FacesS(:,3) Faces];
Faces=sortrows(Faces,1);
FacesOld=0;
Faces... |
af3c05bfc3eb1373de4da54abf6cfd6e7e1fbfba11e2c16443767891100c57da | MATLAB | 536 | 15 | function z = sigma_max( x )
%SIGMA_MAX Maximum singular value.
% SIGMA_MAX(X) returns the maximum singular value of X. X must be a 2-D
% matrix, real or complex. SIGMA_MAX(X) is synonymous with NORM(X).
%
% Disciplined convex programming information:
% SIGMA_MAX(X) is convex and nonmontonic in X, so X m... |
c561f9f9fe0fd666e5db0cac6b27565dc3431594fae87e677b1d9e9c739fdec0 | MATLAB | 536 | 20 | % Local Regression and Likelihood, Figure 9.2.
%
% Hardle's Motorcycle accelaration dataset.
% Local Variance Estimation.
%
% Author: Catherine Loader
%
% NEED: lfknots function to extract fit points.
load mcyc;
fit = locfit(time,'y',accel,'nn',0.1);
y = -2*predict(fit,'fitp','what','lik');
w = predict(fit,'fitp','wha... |
1ba28dd0ce995b940d5f646486a7f472e3460dbe3dcd1a99bd689776f2aa4aab | MATLAB | 538 | 14 | function varargout = AMI_Thomas(varargin)
%AMI_THOMAS (deprecated) Use ami_thomas instead.
% AMI_Thomas has been renamed to ami_thomas. This shim forwards every argument and
% output unchanged, so existing scripts keep working, and warns once per
% session.
%
% Silence with: warning('off','AMI_Thomas:deprecated... |
572611203167153392f1c5648e61b7f3e728bfde84b9fe6148d186ee22fb2d2d | MATLAB | 538 | 14 | function fr = computeFR(theseSpikes)
spiking_stat_window = max(theseSpikes) - min(theseSpikes);
spiking_stat_bins = [min(theseSpikes), max(theseSpikes)];
% Get firing rate across the session
bin_spikes = ...
histcounts(theseSpikes, ...
spiking_stat_bins);
min_spikes = 10;
use_spiki... |
a0d0114695d2383491a42c553eb1a32200c45c88463ff7443357e3cdf0066c93 | MATLAB | 538 | 19 | function y = cvx_isconstant( x, full )
narginchk(1,2);
b = x.basis_;
if size( b, 1 ) <= 1,
y = true;
if nargin == 2 && full,
y = y( ones( 1, prod( x.size_ ) ) );
y = reshape( y, x.size_ );
end
elseif nargin == 2 && full,
bz = b ~= 0;
y = cvx_reshape( sum( bz, 1 ) == bz( 1, : ), x.siz... |
b19aaec5233aabceff195171f5f42f9a0ef9155385d2076c46e472c73b9549cf | MATLAB | 538 | 16 | function out = O_orientation( fparam , img , imgR, imgG, imgB, typeidx )
if ( nargin == 1 )
out.weight = fparam.orientationWeight;
out.numtypes = length( fparam.gaborFilters );
for i = 1 : length( fparam.gaborFilters ),
out.descriptions{i} = sprintf('Gabor Orientation %g',fparam.gaborangles(i));
end
else... |
c30f3e6dd6ba4da9034ba2c8a180e2b7fa12f6f3bbc0c5d47f0a8a042834d0a7 | MATLAB | 538 | 26 | function t = fieldnames(obj)
% Fieldnames of a NIFTI-1 object
% _______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
%
% $Id: fieldnames.m 1143 2008-02-07 19:33:33Z spm $
if isfield(obj.hdr,'magic')
t = {...
'dat'
'mat... |
ce83873731805bcefbaaad9fd73ca0c3d44c6bf973a6a3dd735ec1916d15a5c2 | MATLAB | 538 | 18 | %%****************************************************
%% mcpschur: compute schur matrix of HKM or NT direction
%% for MCP and maxG problems.
%%
%% [schurmat] = mcpschur(X,Zinv,schurfun_par);
%%
%% Ak= -ek*ek';
%%
%% SDPT3: version 3.1
%% Copyright (c) 1997 by
%% K.C. Toh, M.J. Todd, R.H. Tutuncu
%% Last... |
ef830f99dd7cb07eb7557916ada4ccf8813cc7dd862b23db551cf1a4e8c16409 | MATLAB | 538 | 34 | function l = FractionRogueSpk(rg,tR,tC)
dt = diff(rg);
r = sum(dt<tR);
if r==0
l=0;
else
nS = length(rg);
%T = rg(end)-rg(1);
%better approximation of "true" f.r. (?)
fr = 1/median(diff(rg));
%a = r*T/(2*(tR-tC)*nS);
a = r/(2*(tR-tC)*nS*fr);
% delta = 1-4*a;
% l =... |
f40eeb039bceb695f6e948a80cdedd28a608bbe1e2cfab2ac352b451067f830d | MATLAB | 538 | 19 | function channelcmb = makeChannelCmb_(areaSeed, seedCh, areaTarget, targetChs)
% odd rows: seed -> target
% even rows: target -> seed
nTarget = numel(targetChs);
channelcmb = cell(nTarget * 2, 2);
seedLabel = [areaSeed, '-', num2str(seedCh)];
for i = 1:nTarget
targetLabel = [areaTarget, '-',... |
5513225fc3728853f2389df4c88be685e6c81c61ea84a3e29609baf846a1094c | MATLAB | 539 | 10 | %CVX: Matlab 6 compatability functions.
% This directory contains definitions for 'true' and 'false'. These
% functions are used extensively in CVX, and are built in for MATLAB
% 6.5 and later. For MATLAB 6.1 we supply these surrogates. It is
% *very* important, however, that this directory NOT be placed in
% ... |
329c7e046adfa560c100ffd6e8e4de075a77d1427243b85dd7fccf3e3c874a33 | MATLAB | 540 | 26 | % FIRFILT FIR filtering with zero phase distortion.
%
% matrix columns are filtered;
% output is a column vector / matrix.
% 19-Jul-02 ES
% 27-jan-03 zero phase lag
function Y = firfilt(x,W)
if all(size(W)>=2), error('window must be a vector'), end
if numel(x)==max(size(x)), x=x(:);... |
41c1d9e33a8dbce1ccb63571600e050f0ec90738e17d0974ea3216e861778c42 | MATLAB | 540 | 21 | close all;
clear;
clc;
addpath(genpath('../../functions/'));
subInfo = csvread('../../../subInfo/rid_sex_mDoB_yDoB_mExam_yExam_ageExam_dx_icv_bl.csv');
rid_dx = subInfo(:, [1 8]);
ridList = rid_dx(:, 1);
rid_viscode_examdate_mem_ef = CBIG_get_mem_ef(ridList, 0);
indBl = strcmp(rid_viscode_examdate_mem_ef(:, 2), 'bl'... |
e0bc510e494c666b9e38d3cf61e4a52911fd757c5adb81b51fbbb62dfa51fca3 | MATLAB | 540 | 15 | function CSVfiletoNifti(dirtempschi001,Vatl,Datl)
Datl(isnan(Datl)) = 0;
indfordatout = unique(Datl);
indfordatout(indfordatout==0) = [];
csvfiles = dir([dirtempschi001,filesep,'*.csv']);
for i = 1:length(csvfiles)
outname = [dirtempschi001,filesep,csvfiles(i).name(1:end-4),'.nii'];
P05 = csvread([dirtempschi00... |
ecd77d3708c8f241bbbdc96e58e93f507389e9e08ec8aa6236de238118723838 | MATLAB | 540 | 24 | function ea_openin(hobj,~,appname,handles)
callingfig=hobj.Parent.Parent.Name;
if strcmp(callingfig,'Lead Group Analysis')
M=getappdata(handles.leadfigure,'M');
uipatdir=M.patient.list;
if ~iscell(uipatdir)
uipatdir={uipatdir};
end
if ~isempty(uipatdir)
uipatdir=uipatdir{get(handles... |
07a14b0ffb4a9a710046c5701600842b632a6a2584c82a69432a36ee76760264 | MATLAB | 542 | 21 | % Local Regression and Likelihood, Figure 5.6.
% Author: Catherine Loader
%
% Cumulative Distribution Function
%
% This function uses cdfplot() from Matlab's add-on statistics toolbox.
%
% NEED:
% predict should backtr by default?
load geyser;
fit = locfit(geyser,'nn',0.1,'h',1.2,'renorm',1);
x = (1:0.01:6)';
z = pr... |
3445453cd72975e03033eba2ebd59e660c2c7e1da4883e2f3d4afac91ff27254 | MATLAB | 542 | 14 | function nirs = setOpticalProps(nirs, props)
%SETOPTICALPROPS Fill mua/mus by region for a given wavelength.
% props is a struct with region fields 1..5 each containing .mua and .mus (mm^-1)
% Example: props(760).r(5).mua = 0.0170; props(760).r(5).mus = 0.74; etc.
regions = unique(nirs.region(:));
for rid = regi... |
9fd374f078f1453461bd6c524d4f4a10961d9c16b93fd105ffd9825941eb39ed | MATLAB | 543 | 21 | %% Figure 5 supp1
YOURDATAPATH = '';
% Load ROIs and PETHs data
fileList = searchFilesRecursive(YOURDATAPATH, 'allROIs.mat');
load(fullfile(fileList.folder, fileList.name))
load('allenDorsalMap.mat');
% Using only cue-modulated henceforth
allROIs = allROIs([allROIs.modCue] == 1);
% Params
smoothSD = 0.15;
color = 'D4'... |
77ab5cf90fa8679be2aa75a0c35458789662844b48313354f9ea5d402b16bd78 | MATLAB | 544 | 18 | % Counts the number of connected triples in a graph
% INPUTs: adjacency matrix
% OUTPUTs: integer - num conn triples
% Other routines used: kneighbors.m, loops3.m
% Note: works for undirected graphs only
% GB, Last updated: October 9, 2009
function c=num_conn_triples(adj)
c=0; % initialize
for i=1:length(adj)
n... |
027f37c364e2dbac235fd2a0480593794b82e0d20260d25199c5278e3392eba0 | MATLAB | 546 | 22 | function y = unique_no_nan(x)
% Unique() function that ignores NaNs in arrays and 'NA' in cellstr.
persistent old_matlab
if isempty(old_matlab)
old_matlab=verLessThan('matlab','7.14');
end
if old_matlab
[y,ia,ic]=unique(x);
[~,ind]=sort(ia); %Trick to get the original order in older matlab versions
y=y... |
cadc2f064b6f4caf3bc9716b2eeb9271ebb540246cb4ade9145b148e2fdec7af | MATLAB | 546 | 25 | function show_positionMask2d(yy)
% Usage ... show_positionMask2d(out_str)
if (nargout==0)
[tmpname,tmppath]=uigetfile('*.*','Select PositionMask File to Open');
yy=[tmppath,tmpname];
disp(sprintf(' loading %s',yy));
end;
if ischar(yy),
load(yy),
tmpvar=who; clear yy
if exist('tmpname','var'),
yy=ys; ... |
d93e43bd28d8fa64c403ee4fa7201e98c4b021f15b0dde13eb82d6037276f0d9 | MATLAB | 546 | 18 | function x = dodger(x,draw_data,dodge)
%dodging
avl_w=draw_data.dodge_avl_w;
%Compute dodging and bar width
dodging=avl_w*dodge./(draw_data.n_colors);
%NEW DODGING
if dodge
if draw_data.dodge_fallback %No advanced dodging
x=x-0.5*dodging*draw_data.dodge_n+dodging*0.5+(draw_data.dodge_ind-1)*dodging;
el... |
2dfdcbd3d6a29fe33995d6fcfdeeeb2a1caabb8a574678288945344033eb5f5a | MATLAB | 548 | 8 | function [sumintensity] = ea_diode_intensitypeaksdirmarker(intensity,angles)
%% this function detects 'noPeaks' number of intensity peaks. peaks are constrained to be at 360°/noPeaks angles to each other.
%% Function runs a noPeaks * (360°/noPeaks) array over the intensity-profile and finds the angle at which t... |
631a04b6f81deb01e47ad1c8ed401a442906ad25391a02cdd95fe21dbf3f1ce9 | MATLAB | 548 | 29 | function alpha = circ_axial(alpha, p)
%
% alpha = circ_axial(alpha, p)
% Transforms p-axial data to a common scale.
%
% Input:
% alpha sample of angles in radians
% [p number of modes]
%
% Output:
% alpha transformed data
%
% PHB 2009
%
% References:
% Statistical analysis of circular data, N. I. F... |
0c7f3c3656a036613f54bdb2f08a58e951c097b8481ea57a819d824594ee0f77 | MATLAB | 549 | 26 | function f = Wilcoxon_Rank_Test( x,y ,alpha);
%UNTITLED ´Ë´¦ÏÔʾÓйش˺¯ÊýµÄÕªÒª
% ´Ë´¦ÏÔʾÏêϸ˵Ã÷
Z=[x;y];
[z1,z2]=sort(Z,'ascend');
for i= 1:size(x,1)
for j=1:size(z1,1)
if z1(j)==x(i)
X(i,1)=j;
end
end
end
end
m=size(x,1);
n=size(y,1);
Ex=m*(m+n+1)/2;
Varx=m*n... |
b4440a7ef5a9450efd54309198fd83c3777a708f82434e5dab01e1a6bb1a7752 | MATLAB | 549 | 14 | function varargout = Ent_MS_Plus(varargin)
%ENT_MS_PLUS (deprecated) Use ent_ms_plus instead.
% Ent_MS_Plus has been renamed to ent_ms_plus. This shim forwards every argument and
% output unchanged, so existing scripts keep working, and warns once per
% session.
%
% Silence with: warning('off','Ent_MS_Plus:depr... |
e6ddf94a46d6ef3237789073e219298f4de78bb128632af13d435ba3909d6449 | MATLAB | 549 | 15 | function list = child_match(tree, uid, tag)
mychildren = children(tree, uid);
list = zeros(length(mychildren), 1); %allocate as many as there could possibly be, to avoid loop growing
count = 0;
for ch_uid = mychildren
switch get(tree, ch_uid, 'type')
case 'element'
if... |
f2bef46fc252ea0e931b08caeb7228a470f03e00383a7922c758a6c5aad33e0a | MATLAB | 549 | 19 | function [fxy fcorr] = crossrefract(rgx,rgy,tR,tC)
% USAGE:
% [fxy fcorr] = CROSSREFRACT(rgx,rgy,tR,tC)
%
% INPUTS:
%
% CROSSREFRACT computes the fraction fxy of rogue spike in the merged
% spike trains. fcorr is an attempt to normalize it relatively to the
% number of spikes in each individual spike train (no... |
c4a24da2942f0c2a4dd0170940af8692b44e4f87b0b61d0380ee6112cd0ec50c | MATLAB | 550 | 29 | function [ node_num, node_dim ] = triangle_node_size_example ( )
%*****************************************************************************80
%
%% GMSH_MESH2D_NODE_SIZE_EXAMPLE: sizes of node information for the example.
%
% Licensing:
%
% This code is distributed under the GNU LGPL license.
%
% Modified:
%
%... |
1ca60d22fb345656138b6f15f443c7c556e589d6c813dea1dc3733692e4f967a | MATLAB | 551 | 25 | function xm=mymode(y,nbins,nlook)
% Usage x=mymode(y,nbins,nlook)
if nargin==1, nbins=100; nlook=2; end;
if nargin==2, nlook=2; end;
if prod(size(y))==length(y), y=y(:); end;
for mm=1:size(y,2),
[nn,xx]=hist(y(:,mm),nbins);
[tmpmax,tmpmaxi]=max(nn);
xm(mm)=xx(tmpmaxi);
if (tmpmaxi>nlook)|(tmpmaxi... |
b05c1936c409938201276079fcafc33c1f79c19a9f0d4d886de7c9d6826ede1c | MATLAB | 551 | 17 | function [savedir]=ea_getfsstatesavedir(directory,vsname,fibersfile,seedfile,targetsfile,thresh,mode)
% helper function to save fiber states
% called from ea_cvshowvatdmri.m
[~,fibersname,~] = fileparts(fileparts(fibersfile));
if size(seedfile,2)==2
sides='both';
else
[~,sides,~]=fileparts(seedfile{1});
s... |
5481ce1f9671ccb82350da8103d80b6545d5308b3573fbc7bc6f7d188952cfd5 | MATLAB | 552 | 27 | function idx = makeUnionIndex_(axisVec, ranges)
% Return union index of axisVec within n x 2 ranges.
axisVec = axisVec(:);
if isempty(ranges)
idx = (1:numel(axisVec))';
return;
end
ranges = sort(ranges, 2);
mask = false(numel(axisVec), 1);
for i = 1:size(ranges, 1)
l... |
93c034d3bb432a6a92536a1791b45b2ebee5fcf3a254236e91774d2f793685b0 | MATLAB | 552 | 21 | function [fname] = check_file_extension(fname, extension)
% See also CLEAR_FILE_EXTENSION, ISFILEXTENSION.
%
% File: check_file_extension.m
% Author: Ioannis Filippidis, jfilippidis@gmail.com
% Date: 2012.06.22
% Language: MATLAB R2012a
% Purpose: append desired file extension if absent
% Copyri... |
9c9ee7d53ca3e05654a6847709ce4e5e48289f8a695436e30448fc18bd7e094a | MATLAB | 552 | 20 | function [minC, maxC] = coor_extremals(C)
% usage
% [minC, maxC] = coor_extremals(C)
%
% input
% C = cell matrix of nested cell/numeric matrices, with numeric or empty
% matrices at the bottom nesting level, of coordinates. These belong
% to different graphics objects.
%
% output
% minC = mi... |
a2607e36e04171056d4dfd9e02c55a19a5979ed373a94c6726bfc14810e9d27e | MATLAB | 552 | 16 | function tree = setfilename(tree,filename)
% XMLTREE/SETFILENAME Set filename method
% FORMAT tree = setfilename(tree,filename)
%
% tree - XMLTree object
% filename - XML filename
%__________________________________________________________________________
%
% Set the filename linked to the XML tree as filename.
%_... |
979fef23e1b8136181d177e9240a01a05a8a69fb229be027a4926786e3bf6aca | MATLAB | 553 | 16 | function names = fieldnames(this)
% Fieldnames method for GIfTI objects
% FORMAT names = fieldnames(this)
% this - GIfTI object
% names - field names
%__________________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
% Guillaume Flandin
% $Id: f... |
b015e44d1f9c659f5f978216cb6d561d241cf88f518455b713ff3a1d1303bf50 | MATLAB | 553 | 23 | % Splits a string into a cell array of strings.
%
% Input arguments:
% string:
% a string to split into a cell array
% adjoiner:
% string separating each neighboring element
%
% See also: strjoin
% Copyright 2008-2009 Levente Hunyadi
function strings = strsplit(string, adjoiner)
if nargin < 2
adjoiner = spr... |
25d59208b86fc87318298f7f3c0ca283599fb8ab53285ee5cc835cf1cfbe0c29 | MATLAB | 554 | 15 | %% Convenience Wrapper for the MPRWorldCoordinate Class by Florian Bernard
%
% Andreas Husch
% Centre Hospitalier de Luxembourg, Dept. of Neurosurgery /
% University of Luxembourg - Luxembourg Centre for Systems Biomedicne
% 2017
% mail@andreashusch.de, husch.andreas@chl.lu
function [mpr, oc] = createSimpleMPRWorldCoor... |
a3fdae42e5472061d3bb99d4ab48c329af66c9f425de19f4c9f15ecc4c11535f | MATLAB | 554 | 21 | function [allROIs, subpops] = assignSubpops(allROIs, subpopField)
% Hard cluster by assigning subpop identity with largest log prob to each
% neuron
if nargin < 2
subpopField = 'lpSP';
end
fields = fieldnames(allROIs);
subpopNames = fields(cellfun(@(x) contains(x, subpopField), fields));
[allROIs.subpop] = deal(... |
2971cb9bb207baada4c4a40afe4409f35a538fee315d43f9ff8a1f0d1cfd43bb | MATLAB | 555 | 22 | function cvcpt = cvcompute(mat, weights, foldid, nlams)
% Internal glmnet function. See also cvglmnet.
% Compute the weighted mean and SD within folds, and hence the se of the mean
wisum = accumarray(foldid,weights);
nfolds = max(foldid);
outmat = NaN(nfolds,size(mat,2));
good = zeros(nfolds,size(mat,2));
mat(isinf(... |
314b0769e8b792c5daf40cbffabc85264abb17de5152742ff1dae850420387c2 | MATLAB | 555 | 20 | function [] = print_rhats(stats, varName)
% Prints number of rhat values exceeding threshold for a
rhat_thr = 1.1;
rstats = eval(sprintf('stats.Rhat.%s', varName));
exceeding = rstats(rstats > rhat_thr);
% Logging format string
format_string = strcat( ...
'---> %s: %i [', ...
repm... |
21e01c778a9807049e8956e114d4c9021c303fff912e450742e41ca8207a0887 | MATLAB | 556 | 22 | function [rs]=calcRadius6_up(im,rmask_struc)
% Usage ... [rs]=calcRadius6_up(im,rmask_struc)
check_flag=1;
for mm=1:size(im,3), for nn=1:length(rmask_struc),
%disp(sprintf('[%d,%d]',mm,nn));
rw=rmask_struc(nn).rw;
dx=rmask_struc(nn).dxy;
ctr=[rmask_struc(nn).aloc(1) rmask_struc(nn).aloc(2)];
ang=rmask_struc... |
601c037b491ed6b736712b8e195e71bc7fd3475e7665548d9369d73bd8c54e74 | MATLAB | 556 | 22 | % Local Regression and Likelihood, Figure 10.1.
%
% uses 'module','allcf' rather than 'deriv',[1 1] to get the
% second derivative coefficient
%
% Author: Catherine Loader
load geyser;
a = [0.5 0.75 1];
f=['a','b','c','d'];
for (i=1:3)
figure('Name', sprintf( 'figure10_1%c', f(i) ) );
fit = locfit(geyser,'deg',2... |
8facedf139c1f59dd2ebde5f2e2d264bf03ecf7697177ca0e69a244eb7244121 | MATLAB | 556 | 21 | function a = reshape(b,varargin)
% Overloaded reshape function for file_array objects
% _______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
%
% $Id: reshape.m 1143 2008-02-07 19:33:33Z spm $
if length(struct(b))~=1, error('Can only resha... |
9b3f65049cb0d52bb21b88159515e6bb6802e69a5b1a54ac8ff8774cf897a9d3 | MATLAB | 556 | 18 | function idx = CBIG_MMLDA_find_array_in_array(A, B)
% idx = CBIG_MMLDA_find_array_in_array(A, B)
%
% Find index of array A in array B in order. This function only works for vectors.
%
% Input:
% - A : input array A with shorter length
% - B : target array B with larger length
%
% Output:
% - idx :... |
0b931943aa6fce038c4b82f18c225e54d2a843ab7657bfde50f3a562b6ea380e | MATLAB | 557 | 13 | function [base,wind1,odour,wind2]=poolfluoroverROIs(base,wind1,odour,wind2,avgfluorperiod,k)
fn=fieldnames(avgfluorperiod);%gets the field params - base,wind1,odour,wind2,
directions=fieldnames(avgfluorperiod.(fn{1}));%one two three four five
for p=1:numel(directions)
base.(directions{p})(k,:)=avgfluorperiod.base... |
52cc9ac7a875f3ff0e165a2f1e255a421d86cb13c01f5e3a081b16944fee0bd4 | MATLAB | 557 | 23 | function convnfft_install
% function convnfft_install
% Installation by building the C-mex file needed for convnfft
%
% Author: Bruno Luong <brunoluong@yahoo.com>
% History
% Original: 16/Sept/2009
arch=computer('arch');
mexopts = {'-O' '-v' ['-' arch]};
if ~verLessThan('MATLAB','9.4')
R2018a_mexopts = {'-R2018a... |
8a051a7b8ee486323df423147d2e673294b2d4612a27e0684857e11abad6deae | MATLAB | 557 | 25 | function ea_convert_atlas2segmask(gm_mask, segmask_file, threshold)
% convert probabilistic GM mask to segmaks for OSS-DBS
% IMPORTANT: all other tissue is assumed WM, no CSF!
prob_gm_mask = ea_load_nii(gm_mask);
% initialize
Segment_GM_WM_CSF = prob_gm_mask;
% change the name
Segment_GM_WM_CSF.fname = segmask_file... |
ba926a6a34bff6bdf5b675c1a92f48c84094409d98d6ce3af641d4663a0238a4 | MATLAB | 557 | 28 | %%*********************************************
%% mytime:
%%
%% SDPT3: version 3.1
%% Copyright (c) 1997 by
%% K.C. Toh, M.J. Todd, R.H. Tutuncu
%% Last Modified: 16 Sep 2004
%%*********************************************
function [hh,mm,ss] = mytime(t)
t = round(t);
h = floor(t/3600);
m = floor(rem(t,3600)/60);
s ... |
f74aaf9afbf2e6c345c40a183725c6d1b1af5459caebf6343c7e47bbd6e42e27 | MATLAB | 557 | 27 | % HTMLREPORTS
% Version 0.1 Nov-22-2013
%
% Summary
%
% Generate HTML reports directly from matlab
%
% Description
%
% Generate HTML reports containing text, values, and figures directly
% from Matlab. Reports can be styled using CSS.
% Tags
%
% HTML, Reprots
%
% Included Files
%
% ... |
18ec6742a05425afc1eaffdc25b37bad05de846ef7ca9a793af8dbc117c88122 | MATLAB | 558 | 37 | function [V,E] = quadinv(N,NW)
% calculates the quadratic inverse eigenvectors
%
% Input
% N: number of samples
% NW: time-bandwidth product
%
% Output
% V: The quadratic inverse eigenvectors
% E: the quadratic inverse eigenvalues
x = 0:N-1;
indx = find(x);
y = ones(size(x))*(2*NW/N)^2;
y(indx) = (sin(2*pi*NW*x(ind... |
4fdebea5d5d9e536923ddad50d84155c101eda00adffc089988d068ad12f478c | MATLAB | 558 | 19 | function [n, d] = getHesseLineForm(mdl)
%GETHESSELINEFORM computes the unique orthogonal unitary vector
%corresponding to a given line equation.
% [n, d] = getHesseLineForm(mdl)
% INPUTS
% mdl - 2x1 array containing the slope and y-intersection of a linear
% equation in the form y = m·x + b
% OUTPUT... |
f948b2a023775a89f9f4a73e3c832e5d58555583e679baa731af3bccd0f61048 | MATLAB | 558 | 20 | function output_mtx = CBIG_MMLDA_cellstr2matrix(input_cell)
% output_mtx = CBIG_MMLDA_cellstr2matrix(input_cell)
%
% Tranform a cell array to matrix.
%
% Input:
% - input_cell : input cell string
%
% Output:
% - output_mtx : ouput matrix
%
% Example:
% input_cell = {'1', '2'};
% output_mtx = CBIG_MMLDA_cel... |
1acd983958545404c6dace9458e777821dcbc2ffc745facf492796b84e6ecac3 | MATLAB | 559 | 22 |
%create some obviously unimodal and bimodal Gaussian distributions just to
%see what dip statistic does
% Nic Price 2006
Cent1 = ones(1,9);
Cent2 = 1:1:9;
sig = 0.5;
nboot = 500;
tic
for a = 1:length(Cent1),
xpdf(a,:) = sort([Cent1(a)+randn(1,200) Cent2(a)+randn(1,200)]); %allocate 200 points in each... |
aeb44b51f622428ded1518e67978755d677fdb16bf8f1eaa549fd369f0fec352 | MATLAB | 559 | 17 | function obj=geom_vline(obj,varargin)
% geom_abline Display vertical reference lines in each facet
%
% Example syntax: gramm_object.geom_abline('xintercept',1,'style','k--')
% See geom_abline for details
p=inputParser;
my_addParameter(p,'xintercept',0);
my_addParameter(p,'style','k--');
my_addParameter(p,'extent',2);
... |
cc64491c0cc425e301e9b2ed50f2dbed5255215f8565f66e9ca8d9760637a999 | MATLAB | 559 | 16 | function [n, ts, sv] = plx_event_ts(filename, ch)
import CMBHOME.PLX2Mat.*
% plx_event_ts(filename, channel) Read event timestamps from a .plx file
%
% [n, ts, sv] = plx_event_ts(filename, channel)
%
% INPUT:
% filename - if empty string, will use File Open dialog
% channel - 1-based external channel number
% ... |
0786cd777937de043f1c3198ac88b378470aa0c02e5f8d0cf273f70646e163b4 | MATLAB | 560 | 14 | function varargout = Surr_Theiler(varargin)
%SURR_THEILER (deprecated) Use surr_theiler instead.
% Surr_Theiler has been renamed to surr_theiler. This shim forwards every argument and
% output unchanged, so existing scripts keep working, and warns once per
% session.
%
% Silence with: warning('off','Surr_Theile... |
6a0ad16c7a8a09d8f9bd0d6ae21b11baf31e89702fa4fe5c415d5ffad1b86282 | MATLAB | 560 | 14 | function varargout = Ent_Weighted(varargin)
%ENT_WEIGHTED (deprecated) Use ent_weighted instead.
% Ent_Weighted has been renamed to ent_weighted. This shim forwards every argument and
% output unchanged, so existing scripts keep working, and warns once per
% session.
%
% Silence with: warning('off','Ent_Weighte... |
87402d65ce27c4a4aa6970345df3ba26b0de0d4156b9f80d7931d27c2c21070e | MATLAB | 560 | 13 | dataset = 2;
if (dataset==1)
stopfile = '..\kdd\NYTimes\stopwordlistNYTimes.txt';
load 'nips_stream'; % WS DS WO;
[ WW , WO , WS , DS , SI , ORIGWSPOS ]=stream_to_collocation_data(DS,WS,WO,stopfile);
save 'nipsbagofwordsfromstream' WO DS WS ORIGWSPOS;
elseif (dataset==2)
stopfile = '..\kd... |
a8e4c59749096d7949506b62011d615d6a30f42b6ccb6cfe44bae692c0e059aa | MATLAB | 560 | 14 | function varargout = Ent_Symbolic(varargin)
%ENT_SYMBOLIC (deprecated) Use ent_symbolic instead.
% Ent_Symbolic has been renamed to ent_symbolic. This shim forwards every argument and
% output unchanged, so existing scripts keep working, and warns once per
% session.
%
% Silence with: warning('off','Ent_Symboli... |
ab090acb972028df049fad2abdd6c0311aa6a74bdae801e20b526beefd2ca4b3 | MATLAB | 560 | 14 | function varargout = AMI_Stergiou(varargin)
%AMI_STERGIOU (deprecated) Use ami_stergiou instead.
% AMI_Stergiou has been renamed to ami_stergiou. This shim forwards every argument and
% output unchanged, so existing scripts keep working, and warns once per
% session.
%
% Silence with: warning('off','AMI_Stergio... |
b34cb787284d081ff175ba7470669214ed4d7a0618c1cd77b74a06ab04dfde08 | MATLAB | 560 | 18 | function C = maplecolor(X,Y,Z)
%MAPLECOLOR Generates truecolor data in the default Maple color scheme.
% C = MAPLECOLOR(X,Y,Z) generates an M-by-N-by-3 matrix when each of X, Y,
% and Z are M-by-N. The resulting truecolor matrix maps [X,Y,Z] to
% [R,G,B], scaled to soften the colors.
C = cat(3, X, Y, Z);... |
94c719b1d94acf995335e16be4729d8e63d55709a2fe5f94e925bb8d0367a000 | MATLAB | 561 | 20 | function pluginName = defaultVideoIOPlugin
%pluginName = defaultVideoIOPlugin
% Returns the name of the default videoIO (videoReader/videoWriter) plugin.
% The videoReader and videoWriter constructors will use the returned plugin if
% none is specified.
%
% SEE ALSO:
% buildVideoIO
% videoReader
% videoWrit... |
df8c3060dd18fcb5b2c77e7eddb0ae321e560f3ccf82dd7e988f5a400a50d33d | MATLAB | 561 | 22 | function [bbox, BW] = ea_autobbox(input, margin)
% Calculate the minimum bounding box and binary mask of the nifti image
if nargin < 2
margin = 5; % add margin to the calculated bounding box, unit in voxel
end
nii = ea_load_nii(input);
img = nii.img;
th = multithresh(img);
BW = img > th;
[i,j,k] = ind2sub(size... |
87f7fdb70ad2976aafc5c3a733e6ef1b3cb36cc6fb57b08c78c860d524c13cfd | MATLAB | 562 | 17 | function p = parent(tree,uid)
% XMLTREE/PARENT Parent Method
% FORMAT uid = parent(tree,uid)
%
% tree - XMLTree object
% uid - UID of the lonely child
% p - UID of the parent ([] if root is the child)
%__________________________________________________________________________
%
% Return the uid of the parent... |
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