sha256 stringlengths 64 64 | language stringclasses 28
values | size int32 1 491k | lines int32 1 23.2k | content stringlengths 1 200k |
|---|---|---|---|---|
4c44609aaca2a4f14e591ab50a5e7e95e7c75acdf78b79a88180a5d423ea3fdd | MATLAB | 606 | 18 | function [ql,qu]=idealf(x)
% Compute the ideal fourths for data in x
% The estimate of the interquartile range is:
% IQR=qu-ql;
% Adapted from Rand Wilcox's idealf R function, described in
% Rand Wilcox, Introduction to Robust Estimation & Hypothesis Testing, 3rd
% edition, Academic Press, Elsevier, 2012
% Cyr... |
a549b519c2d32c052263d22ffafdf78fb09746a56a60c6463bfeba30ed5a6f2f | MATLAB | 606 | 14 | %% calling wrapper for numerical integration (C. diff simulations)
pathogen_ID = 2; %C. diff currently hardcoded elsewhere as OTU #2
pathogen_t0 = 1; %pathogen introduction time
numSubjects = length(T_sample);
experimentBlocks = ones(numSubjects,1);
med_biomass = 22.3358; %these values obtained from a run (with fewer... |
e98ed100a49315ef6625e80bfba0dd325a86e6a54b4c27cb029c42e769e73a0e | MATLAB | 606 | 17 | function result = safeDivideGBVS(arg1,arg2)
% safeDivide - divides two arrays, checking for 0/0.
%
% result = safeDivide(arg1,arg2)
% returns arg1./arg2, where 0/0 is assumed to be 0 instead of NaN.
% This file is part of the SaliencyToolbox - Copyright (C) 2006
% by Dirk Walther and the California Institute of Tec... |
156c2d75b54d25e98ef465a1e732b16f8ccdeed0c134e80113fa63870334c996 | MATLAB | 607 | 36 | function y=normch(x,xmin,xmax)
% Usage ... y=normch(x,min,max)
%
% Takes x and returns it with range from 0 to 1 or from min to max
if (prod(size(x))==length(x)),
x=x(:);
end;
ncol=size(x,2);
if (~exist('xmin')),
xmin=[];
end;
if (~exist('xmax')),
xmax=[];
end;
if (isempty(xmin)),
xmin=min(... |
369ac16b0ea2fd7a038821bc514da23c299c98a662c232f9a3137d2a9555d127 | MATLAB | 607 | 14 | function GCO_SetLabelOrder(Handle,Order)
% GCO_SetLabelOrder Set label order for Expansion/Swap moves.
% GCO_SetLabelOrder(Handle,Order) tells Expansion/Swap to select labels
% in a specific order when Order contains integers from 1..NumLabels.
% By default, Expansion/Swap use a consistent, prescribed order... |
617d08500c19c9e52ae3128fcb0514e6d73c6dced1fddf3be4c8ea049acec871 | MATLAB | 607 | 18 | function y = isreal( x, full )
%Disciplined convex/geometric programming information for ISREAL:
% ISREAL(X) may be freely applied to any CVX expression. It will
% return TRUE for all real affine, convex, concave, log-convex,
% and log-concave expressions, and FALSE for complex affine
% expressions.
y = x.ba... |
7bf7986e9f5caaf61d619d4f7c8cb5395e94a7b4f5ea99d7c9fe952de62531ee | MATLAB | 608 | 19 | function [ea_stats,thisstim]=ea_assignstimcnt(ea_stats,S)
thisstim=1;
if isfield(ea_stats,'stimulation')
if ~isfield(ea_stats.stimulation,'label') % legacy, delete older stimulations
ea_stats=rmfield(ea_stats,'stimulation');
else
for stimfield=1:length(ea_stats.stimulation)
if strcmp... |
badd94e8350bd491225ccafbe70e52c0d358370e20fdb413cced54a29b591d88 | MATLAB | 608 | 26 | function child = children(tree,uid)
% XMLTREE/CHILDREN Return children's UIDs of node uid
% FORMAT child = children(tree,uid)
%
% tree - a tree
% uid - uid of the element
% child - array of the UIDs of children of node uid
%
% Return UID's of children of node uid
%
% See also XMLTREE
child = [];
uid = uid(:);
... |
27fc0722e836c6c71284635f94b16136a13c8fa467e3860cb369b3953cc9da6b | MATLAB | 609 | 20 | function r = CBIG_MMLDA_get_run_num(in_dir, k)
% r = CBIG_MMLDA_get_run_num(in_dir, k)
%
% Get best run number based on visualization folder name.
%
% Input:
% - in_dir: input directory which is the parent direcotry of "k*"
% - k : number of fators, e.g. 2, 3, 4
%
% Output:
% - r : number of run. e.g. 11,... |
90bb6c1cead81f0eb331beb48d9f196d431f733863567614fd4ff0159156ac8e | MATLAB | 609 | 27 | r = linspace(0,0.9,51);
g = linspace(0,0.9,51);
b = linspace(0,0.9,51);
x = [-pi:0.1:pi];
%%
s = [1:50:2001];
for s = [1:100:4001]
for i = 1:51
AF(i,:) = cos(x-stims(s).Atheta(i));
OF(i,:) = cos(x-stims(s).Otheta(i));
end
for i = 1:51
thing(i,:) = (stims(s).Am... |
c165ca4c57308e27825586ecc40336a398d4cdec10e648e91f32f5904f25d86d | MATLAB | 609 | 23 | function v = cvxtuple( varargin )
if nargin == 1,
v = varargin{1};
switch class( v ),
case 'struct',
if numel( v ) ~= 1,
error( 'struct arrays not permitted in cvx tuple objects.' );
end
case 'cell',
v = reshape( v, 1, numel( v ) );
ot... |
d115d320662689d963b95c18d84bb11fce35898c9c57905cddecf73fbc157901 | MATLAB | 609 | 38 | function rval = rtest_6()
rval = 0;
try
% create a line graph
n = 10;
A = sparse(1:n-1,2:n,1,n,n);
A = A+A';
u = 1;
v = 5;
d = dist_uv(A,u,v);
if any(d(v+1:end) > 0)
error('breadth_first_search did not stop correctly');
end
rval = 1;
catch
lasterr
end
end... |
eb297969dfb13c9de71508958960605a41c987e80fa9f9b81a7e3c72e7b430c8 | MATLAB | 609 | 24 | %%******************************************************
%% graph: generate random adjacency matrix.
%%
%% B = graph(n,prob);
%%
%% see maxcut.m
%%
%% SDPT3: version 3.0
%% Copyright (c) 1997 by
%% K.C. Toh, M.J. Todd, R.H. Tutuncu
%% Last modified: 2 Feb 01
%%*************************************************... |
ec9e169c13296e4872b4d4d8f5b60297d5e354a5fff53d4670d7a09c8459b650 | MATLAB | 609 | 23 | function s1 = resize_scales(s0,dim,args)
% Resize scalefactors
%__________________________________________________________________________
% Copyright (C) 2005-2013 Wellcome Trust Centre for Neuroimaging
%
% $Id: resize_scales.m 5456 2013-04-29 15:49:22Z guillaume $
dim = [dim ones(1,max(numel(args)-numel(dim),0))];... |
423b209c35563a0c19aa7a2d6ee7da2eb45359db823c5257fb034020dc4537e8 | MATLAB | 610 | 27 | function [isBuzcode, path] = bz_isBuzcode(basePath)
% USAGE
% [isBuzcode] = bz_isBuzcode(basePath)
%
% INPUT
% basePath the basePath to check (default: current directory)
%
% OUTPUT
%
%
% written by david tingley, 2017
if ~exist('basePath','var')
basePath = pwd;
end
if bz_isSession(basePath) % onl... |
ce702501d2ea8fed00dc3e388da740ccf1bf0b9a38c2cb9644881d9ecd6679aa | MATLAB | 610 | 29 | function fit = lf_censor(x,y,cens,varargin)
%
% Censored local regression using normal assumption.
% Must provide x, y and cens.
% All other arguments to locfit() can be provided, with the
% exception of weights.
%
% NEED: Kaplan Meier Estimate. Iterations are fixed.
%
lfc_y = y;
unc = find(~cens);
for i = 0:3
fit ... |
31c2ac2e916fb741a51d7c6b5030e65cdff270fc2d2b6b2c5917f176bcddbbbb | MATLAB | 611 | 17 | function obj=axe_property(obj,varargin)
% axe_property Add a matlab axes property to apply to all subplots
%
% Example syntax: gramm_object.axe_property('ylim',[0 1])
% Arguments are given as a name,value pairs. The accepted
% arguments are the same as in matlab's own set(gca,'propertyname',propertyvalue)
if mod(nargi... |
71eaa757ee564a64e305eaaf65d5d3317112ca59045f477bada6df710749a34a | MATLAB | 611 | 24 | function A=erdos_reyni(n,p)
% ERDOS_REYNI Generates a random Erdos-Reyni (Gnp) graph
%
% A=erdos_reyni(n,p) generates a random Gnp graph with n vertices and where
% the probability of each edge is p. The resulting graph is symmetric.
%
% This function is different from the Boost Graph library version, it was
% reimple... |
f8b0ef2c9a54445c720ed518ddae80817de445c7eda052bdc81a0dc7528bdcc6 | MATLAB | 611 | 17 | function y = square( x )
%SQUARE Square.
% SQUARE(X) is an array of the same size as X, whose elements are the
% squares of the elements of X.
%
% Disciplined convex programming information:
% If X is real, then SQUARE(X) is convex and nonmonotonic in X. If X
% is complex, then SQUARE(X) is neithe... |
f1a446f86705a5f0b8cf156f3bf0ee080e521fc471838248e023dc5d3f2fd1ba | MATLAB | 612 | 17 | function [n, npw, ts, wave] = plx_waves_v(filename, ch, u)
import CMBHOME.PLX2Mat.*
% plx_waves_v(filename, channel, unit): Read waveform data from a .plx file
%
% [n, npw, ts, wave] = plx_waves_v(filename, channel, unit)
%
% INPUT:
% filename - if empty string, will use File Open dialog
% channel - 1-based channel... |
d18b76df96445ceb5c5cbb28fe7823b908cf6d8b57676dfe12f46b1e1feec5c2 | MATLAB | 614 | 18 | function spikes = GetSpikes(units,varargin)
%GetSpikes - Get spike timestamps.
%
% NOTE
%
% This function is provided for convenience. It simply calls <a href="matlab:help GetSpikeTimes">GetSpikeTimes</a>
% using the same parameters. See this function for details.
% Copyright (C) 2004-2011 by Michaël Zugaro
%... |
f643acd56b83404a6700de167607cfbf1122e168c4f5b80e764d6b70b7b25214 | MATLAB | 614 | 35 | function len = s_len_trim ( s )
%*****************************************************************************80
%
%% S_LEN_TRIM returns the length of a character string to the last nonblank.
%
% Licensing:
%
% This code is distributed under the GNU LGPL license.
%
% Modified:
%
% 14 June 2003
%
% Author:
%
%... |
173ca5fd9e849f168c7cfc85081ae3cde8ae97efaded20f0e85276c3fbbc7b35 | MATLAB | 616 | 28 | function em = errormatrix(fet,clu)
cluIx = unique(clu);
nClu = length(cluIx);
nDim = size(fet,2);
mu = zeros(nClu,nDim);
sigma = zeros(nDim,nDim,nClu);
p = zeros(1,nClu);
for ii=1:nClu
f = fet(clu==cluIx(ii),:);
% Mean fet vector
mu(ii,:) = mean(f);
% Covariance. We add 1e-5 to the diagonal to ensure ... |
9144f2c863cab66f346c7d2fdaaed2e1cacfd5cc7c611a093b5cc3b2ccc291da | MATLAB | 616 | 26 | function seeds=surfseeds(node,face)
%
% seeds=surfseeds(node,face)
%
% calculate a set of interior points with each enclosed by a closed
% component of a surface
%
% author: Qianqian Fang, <q.fang at neu.edu>
%
% input:
% node: a list of node coordinates (nn x 3)
% face: a surface mesh triangle list (ne x 3)
%
% ou... |
faad785fc4e8b8be997f6993e3b7944e4ffe5645b6420463193f07ac9600b827 | MATLAB | 617 | 25 | function ea_addrecent(handles, uidir, type)
% Add new item to recent patients/group analyses
try
load([ea_prefsdir, filesep, 'ea_recent',type,'.mat'], 'recentfolders');
catch
recentfolders = {};
end
if ismember(['No recent ', type, ' found'], recentfolders)
recentfolders = {};
end
if isrow(uidir)
uid... |
297844afd32beed3a790597e3b71ea75b3c8d9607db78f12c35021f3a488d705 | MATLAB | 618 | 23 | % Local Regression and Likelihood, Figure 7.6.
%
% Estimating the mean survival time using a local weibull
% (transformed Gamma) model.
load heart;
z = 0.625;
ts = (surv+0.5).^z;
fit = locfit(age,ts,'cens',cens,'family','gamma','nn',0.8);
i = find(cens==0);
figure('Name','fig7_6: mean survival time local wei... |
432e1f0114fc886f39d46c276b98c87f94aea9393f0c5e5424bc41285265cf98 | MATLAB | 618 | 14 | function control_max_eig = circular_shift(SpikeCount,number_of_surrogates)
control_max_eig=zeros(1,number_of_surrogates);
for surr_idx = 1:number_of_surrogates
ControlSpikeCount=zeros(size(SpikeCount));
for neuron_idx = 1:size(SpikeCount,1)
drawnbin = randi(length(SpikeCount),1);
auxbin ... |
d232fba11b43cbefa789371644629d0e63202995ab98513836eee8f551fee741 | MATLAB | 618 | 22 | function status = ea_checkJavaClassPath
% Check if static Java class path has been set for LeadDBS
classpath = {fullfile(ea_getearoot, 'ext_libs', 'dragndrop')
fullfile(ea_getearoot, 'helpers', 'gui', 'ListBoxRenderer')};
spath = javaclasspath('-static');
if all(ismember(classpath, spath))
status = 1;
else
... |
26a84c9a75efc7a4b7c2cc4aa5d91a01c2e03e78593d62b55cf451a29f0ed9d9 | MATLAB | 619 | 22 | %% Figure 9 supp 4
% RUN fig9_analysis, then return here
fig9_analysis
% Load map
load('allenDorsalMap.mat');
% Params
cmap = 'L20';
smoothSD = 0.15;
%% Panel A:
% CCF with log probabilities for the area-agnostic GMM component 1
plotMetricMapCCF(dorsalMaps, allROIs, 'lpAllComp1_metrics', smoothSD, cmap)
%% Panel B:... |
6913569e8c5be0971ab4b9dc55cd168d451bb9ba3f26e4e519751ac7b92bae26 | MATLAB | 619 | 24 | function [out filenames] = rotoball_importer(varargin)
n = 1;
for i = 2:2:length(varargin)
refs(n).date = varargin{i-1};
refs(n).expnumber = varargin{i};
n = n+1;
end
all_dir = dir;
for e = 1:length(refs)
ii = 1;
for i = 1:length(all_dir)
if strfind(all_dir(i).name, ['E' num2str(refs(e).e... |
b4dea1a5b61cb5f962143a1e6ebc175d03e6d42d1cdc948a38ec6821227a71bc | MATLAB | 619 | 19 |
for i=1:length(files_on_disk)
study_string=strfind(files_on_disk{i},'Study');
subject_string=strfind(files_on_disk{i},'Subject');
nii_string=strfind(files_on_disk{i},'.nii');
Study(i)=str2double(files_on_disk{i}(study_string+5:subject_string-1));
Subject(i)=str2double(files_on_disk{i}(su... |
fd20b0bddd3f6be5b75c95005d06eb5d36cca3fb0a35973dc2b0964dd89ee5f4 | MATLAB | 619 | 25 | function [n,ind]=my_histcounts(X,edges,normalization)
persistent old_matlab
if isempty(old_matlab)
old_matlab=verLessThan('matlab','8.4');
end
if old_matlab
%We make histc behave like histcounts
[n,ind]=histc(X,edges);
ind(ind==length(n))=length(n)-1;
n(end-1)=n(end-1)+n(end);
n(end)=[];
... |
36733a3cc7c3db6aee907e43f9e161af0920c1443f0fcbedcc99d49f21622bdc | MATLAB | 620 | 20 | function worked = next(vr)
%WORKED=NEXT(VR)
% Advances to the next frame in the video. Returns 0 if the next frame is
% not available.
%
% After the videoReader constructor is called, NEXT, SEEK, or STEP should
% be called at least once before GETFRAME is called.
%
% See videoReader/getinfo for more de... |
e71944ec402abdc78c3f81ddf292273df14394d8564ccb8a08f2d96d389a24e2 | MATLAB | 620 | 34 | function [x,yp_out]=calcRadius3(proj,mii)
% Usage ... x=calcRadius3(proj,mii)
if (nargin<2), mii=[]; end;
if (isempty(mii)),
mii=[1:length(proj)];
end;
xp=[1:length(proj)];
mp=polyfit(xp(mii),proj(mii),1);
yp=polyval(mp,xp);
yp_out=proj./yp;
ypm=mean(yp);
yp=proj-yp+ypm;
xi=[1:0.01:length(proj)];
ypi=interp1(xp,... |
5108b35426e988b9d5b9c8e7798b83fbe7e263acb95f8754c676505519a719af | MATLAB | 621 | 18 | function s = struct(this)
% Struct method for GIfTI objects
% FORMAT s = struct(this)
% this - GIfTI object
% s - a structure containing public fields of the object
%__________________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
%... |
9de81e2d0a531e6bb7ec4dad63263d8c711fd7d7acc078f071500f9d3d63f5aa | MATLAB | 621 | 16 | function scalingFactors = getAnalogToVoltageScaling(param)
% get scaling factor
if strcmp(param.ephysMetaFile, 'NaN') == 0
if contains(param.ephysMetaFile, 'oebin')
% open ephys format
scalingFactor = bc.load.readOEMetaFile(param.ephysMetaFile); % single sclaing factor per channel for now
... |
e18db57a64e6ed8b91307e34b0bf0d06ba3c123b033549dafc070f580818ffd5 | MATLAB | 622 | 27 | % Local Regression and Likelihood, Figure 13.1
%
% Author: Catherine Loader
load mmsamp;
figure('Name','fig13_1a');
plot(x,y,'o');
hold on;
fit = locfit(x,y,'deg',1,'kern','minmax','alpha',4000,'ev','grid','mg',200,'ll',0,'ur',1);
xev = fit.fit_points.evaluation_points';
yev = predict(fit,'fitp');
plot(xev,yev);
fi... |
54a515b936d4a460e6815d59d6db01ecc2551901b893c12eace0aa1399eee268 | MATLAB | 623 | 29 |
function SH = cpmSH(dirin,L)
if size(dirin,3) > 1,
for k = 1:size(dirin,3),
[V D] = eigs(dirin(:,:,k));
[~,ix]=sort(D(logical(eye(length(D)))));
dir(:,k) = V(:,ix(3));
end;
else
dir = dirin;
end;
N = size(dir,2);
costheta = (dir(3,:));
xiy = dir(1,:) + i*dir(2,:);
xiy = xiy .... |
988056e49b775b85e6b17442aa9a6b1d1af0b0f2387b482e18f09d84a5bb130b | MATLAB | 623 | 23 | function [q, q_str] = CBIG_get_quantityOfInterest(rid, Q, predementedOnly)
% [q, q_str] = CBIG_get_quantityOfInterest(rid, Q, predementedOnly)
% Quantity of interest
%
% Written by CBIG under MIT license: https://github.com/ThomasYeoLab/CBIG/blob/master/LICENSE.md
if Q == 1 % MMSE
q = CBIG_get_mmse(rid, predement... |
f51e4ff3f044e70f6bc9be9606e2ec94c0a3f15e70d21aebe1d4db18eb5b8b8a | MATLAB | 623 | 20 | % eeg_ms2f() - convert epoch latency in ms to nearest epoch frame number
%
% Usage:
% >> outf = eeg_ms2f(EEG,ms);
% Inputs:
% EEG - EEGLAB data set structure
% ms - epoch latency in milliseconds
% Output:
% outf - nearest epoch frame to the specified epoch latency
%
% Author: Scott Make... |
76625b8329c0fd630e45538510a1cafbaf2601a5ac12eb2e9a6257cdf5392da1 | MATLAB | 624 | 18 | function Jspec = computeSpectralJacobian(Jcell, epsilon)
%COMPUTESPECTRALJACOBIAN Convert dOD/dmua to dOD/d[HbO,HbR].
% Jcell : cell array of Jacobian structs per wavelength with field .complete
% epsilon : [L x 2] extinction coefficients matching Jcell order
% Returns : [ (#meas*L) x 2N ] stacked spectral Jacobian... |
ae1d1dfb474b431585afb3ec5bad29b10bb7b9d2b43d9f54663eb12b921e5855 | MATLAB | 624 | 24 | function [fname] = clear_file_extension(fname, unwanted_ext)
% See also CHECK_FILE_EXTENSION, ISFILEXTENSION.
%
% File: clear_file_extension.m
% Author: Ioannis Filippidis, jfilippidis@gmail.com
% Date: 2012.06.22
% Language: MATLAB R2012a
% Purpose: remove the unwanted file name extension, if pr... |
1bbb7ea54ec261c9d5494cd942a108b9d635f5a6914c4acb6891ad8a384fbd96 | MATLAB | 626 | 26 | function mrs = ea_DPS_nifti_to_mrs(nii)
if ischar(nii)
nii = ea_load_untouch_nii(nii);
end
if ndims(nii.img) > 3
mrs = mrstruct_init( 'series3D', double(nii.img) );
else
mrs = mrstruct_init( 'volume', double(nii.img) );
end
mrs.vox = sqrt( sum((nii.mat*diag([1 1 1 0])).^2) );
mrs.edges = nii.mat;
mrs.edg... |
2bd7b3597280fc8f4b0f0f6419c7c67660b4ced16636fa6de28a367a1e621233 | MATLAB | 626 | 18 | % List of open inputs
% CAT12: Segmentation: Volumes - cfg_files
% Written by Nanbo Sun and CBIG under MIT license: https://github.com/ThomasYeoLab/CBIG/blob/master/LICENSE.md
addpath(spm_dir)
nrun = 1; % enter the number of runs here
jobfile = {[script_dir '/CBIG_MMLDA_segment_new_template_job.m']};
jobs = repmat(job... |
6cf85da306325e48c03aa3fed45be20ea0fa5735f1408f1a4eb188fcd8d8b7c4 | MATLAB | 626 | 16 | function[a,ROIs]=fixROIs(a,ROIs)
[x1,y1,n1]=size(ROIs); %get the size of the ROIs X*Y*number of ROIs
for k=1:n1
test=a{k};%get each individual structure
try
newROI=poly2mask(test.mnCoordinates(:,1),test.mnCoordinates(:,2),x1,y1);%use the real coordinates saved in 'a' to draw the ROI properly using it ... |
74d1f8c8a2cd3bbf426c151edc09c52b59e327913238d5879c052d1d3abf9c16 | MATLAB | 626 | 23 | function v = cvxtuple( varargin )
if nargin == 1,
v = varargin{1};
switch class( v ),
case 'struct',
if numel( v ) ~= 1,
error( 'struct arrays not permitted in cvx tuple objects.' );
end
case 'cell',
v = reshape( v, 1, numel( v ) );
ot... |
e884f6ad22457d764d0048f905ea4195a4f15a3935d1e6906ce52222e5eeb6f6 | MATLAB | 626 | 16 | function onoff = bool2onoff(bool)
%BOOL2ONOFF Substitutes 'on' for non-zero and 'off' for zero input.
% ONOFF = BOOL2ONOFF(BOOL) returns the string 'on' if BOOL evaluates as
% logically true or the string 'off' otherwise.
%
% BOOL2ONOFF and ONOFF2BOOL improve readability for Matlab settings
% (e.g., Han... |
862e9d9b583aaeabb0234fc7d64ea167180d93c5e17a59484544620c606a50f5 | MATLAB | 628 | 11 | %-----------------------------------------------------------------------
% Job saved on 16-Feb-2016 13:52:08 by cfg_util (rev $Rev: 6460 $)
% spm SPM - SPM12 (6470)
% cfg_basicio BasicIO - Unknown
% Written by Nanbo Sun and CBIG under MIT license: https://github.com/ThomasYeoLab/CBIG/blob/master/LICENSE.md
%-----------... |
7fed733e5deb6499e1bb05bfef31c9bed74c6daa9a9e75b414735a3bdc8daf9f | MATLAB | 629 | 22 | function kbd = KullbackLeiblerDivergence(P1,P2)
% KULLBACKLEIBLERDIVERGENCE returns the similarity measure between two
% probability distributions
if abs(sum(P1) - 1.0) > 1e-5 || sum(~P1)
P1(P1 == 0) = range(P1)*1e-6;
P1 = P1/sum(P1);
end
if length(P1) == length(P2)
N = length(P1);
if abs(sum(P2) - 1) >... |
60aa20468d08f28eda51d9bdfcfa82a3372631a5596ba84cbb04f6b454f86961 | MATLAB | 630 | 17 | % Local Regression and Likelihood, Figure 6.3.
% Author: Catherine Loader
%
% Local smooth of CO2 dataset. Estimate the main trend,
% then use periodic smoothing of the residuals to estimate
% the annual effect.
%
% A periodic smooth is specified by 'style','a'.
% Note that year+month/12 scales the predictor to have a ... |
f63e1240ed00bc6503c2c9ecf7bc8c0742cdc2c6d10cd5a70d0461bf640b7aaa | MATLAB | 630 | 30 | % so that stats toolbox is not used
function cmbs = mycombnk( nums , k )
N = length(nums);
T = N^k;
cmbs = zeros( T , k );
for j=T:-1:1
n = j;
for jj=1:k
b = mod(n,N);
n = n - b;
n = n / N;
cmbs( j , k-jj+1 ) = nums(b+1);
cmbs( j , : ) = sort( cmb... |
2748c9d66f68ab0838042cea62f89474e8a72c07f289f151115796742ca397e4 | MATLAB | 631 | 23 | function y = residuals(fit,type)
% Residuals (or a few other things) from a locfit() fit.
%
% Input arguments:
% fit - the locfit() fit.
% type (optional) type of residuals. Valid types are
% 'dev' (deviance, the default)
% 'd2' (deviance squared)
% 'pearson'(Pearson)
% 'raw' (observed - ... |
5e766e672e6747268a25cd96a40d5bb2c4778786c58510188e42f8ac248a80e7 | MATLAB | 632 | 26 | function tf = subStrCmp(C,S)
% function tf = subStrCmp(C,S)
%
% Test if string S (S can be a cell array of strings) exists in C (C can be
% cell array of strings). If both are cell arrays, results will have size
% N x M where N is the length of cell array C and M is the length of cell
% array S.
if ~iscell(C), C = {C... |
80d3e45e2febd3532450730afb0ea5854cd48d3d69a50a5ce690bc880c6ab0ff | MATLAB | 632 | 33 | % Entropy maximization
% Joëlle Skaf - 04/24/08
%
% Consider the linear inequality constrained entroy maximization problem
% maximize -sum_{i=1}^n x_i*log(x_i)
% subject to sum(x) = 1
% Fx <= g
% where the variable is x \in \reals^{n}
% Input data
randn('state', 0); ... |
91521e34be428af3839ecff7e66fed926e27484cf00b27e7f74314bdd47985a4 | MATLAB | 632 | 29 | function vol=surfvolume(node,face,option)
%
% vol=surfvolume(node,face,option)
%
% calculate the enclosed volume for a closed surface
%
% author: Qianqian Fang, <q.fang at neu.edu>
%
% input:
% node: node coordinates
% face: surface triangle list
%
% output:
% vol: total volume of the enclosed space
%
% --... |
bbf7ff1167ad7cedb9094fbae6b155e916768562cdd7523bfa2a7b72f15500f4 | MATLAB | 632 | 25 | function obj=set_polar(obj,varargin)
% set_polar Activate polar axes
%
% This command changes axes to polar form. 'x' then corresponds
% to theta
% Additional parameters:
% 'closed': When plotting lines, connect the first
% and last points when set to true
% 'maxy': set the maximum y value (automatic scaling can't work... |
8b86754c5091d4a9b8dde52726da4cdd82a79694a85c5128b48be17ebbd523ac | MATLAB | 633 | 27 | function lutEntry = createInteractionLUTs(ten,sinterp,Pstruc,fixedtissuemodel,thedir)
verbose = false;
% model model correlations
fid = fopen(fullfile(thedir,'interactionLUTs.h'),'w');
fprintf(fid,'/********* DWscheme dependent model-model interaction ***********/\n\n');
bestpp = createModelModelLUT(ten,Pstruc,fixe... |
13c7d01fc32e20e1218b3e4bc3f77cc48c27256ffe90e755c3160adffd9d4061 | MATLAB | 634 | 19 | function [Xpix,Ypix,FrameRate]=findkeyparams()
%use this function to get the FOV and the framerate of aquisition
%you have to parse the XML file from thor.
%this sucks and is definitely not elegent
disp('Show me where the XML file is for any experiment from this set');
[matexpfile,matexppath]=uigetfile('*.*');
cd(... |
854204b2b637d53bc783afdaa8cab1031c3d9f0e08b0afe39e7cf83dcdaf59ff | MATLAB | 634 | 15 | function [fdArray] = makeArray(fluordata,startIdx)
% This function takes a struct of single vector multitrial data (such as
% output from combineFluordata() or backgroundSubtract() with one ROI)
% and combines trials into a single array.
dirn = fieldnames(fluordata);
for d=1:numel(dirn) % for every trial type
... |
c7774f9cb98a171e269cadbd0e05105c5c08acd526daa825b7750594a0afb052 | MATLAB | 634 | 21 | % subfunction checking the number of local copies
% -----------------------------------------------
function ncopies = checkcopies_local(obj, arg);
ncopies = 0;
if isstruct(arg)
for ilen = 1:length(arg)
for index = fieldnames(arg)'
ncopies = ncopies + checkcopies_local(obj, arg(ilen).(index{1}))... |
f9056dc54c682859ff97c39e5db925d7def86245080c102d86b3a0caf993d828 | MATLAB | 634 | 15 | function y = polyenv( varargin )
%POLYENV Evaluate the convex or concave envelope of a polynomial.
% We have replaced this function with POLY_ENV to better match our
% function naming conventions. Please start using it instead.
warning( 'CVX:Renamed', [ ...
'The function "polyenv" has been renamed "poly_env".... |
6d279581352208a48513b88bb476cbeb2ebc2d89a5b27deea5cdcbfabadb6c43 | MATLAB | 635 | 23 | function uipatdir = ea_getpatients(options,handles)
uipatdir = ea_uigetdir(ea_startpath, 'Please choose patient folder(s)...');
if isempty(uipatdir)
return
end
if exist('handles','var')
ea_load_pts(handles,uipatdir);
if isfield(handles,'atlassetpopup') % not present in connectome mapper
atlasset... |
70acadc2ace9dd3b2c8b198c33eea74bb4f8337870258d4554893d09cf36318f | MATLAB | 635 | 15 | %.^ Array power.
% Z = X.^Y denotes element-by-element powers. X and Y must have
% compatible sizes. In the simplest cases, they can be the same size or
% one can be a scalar. Two inputs have compatible sizes if, for every
% dimension, the dimension sizes of the inputs are either the same or one
% of them is... |
71c9bcbc7e4e9cd042c907f10b73e6531cb6f0aaaeeb006d5f4b9ebd90cf25bc | MATLAB | 635 | 25 | function root = AddLFPTheta(root)
% Adds filtered LFP signal (and phase, amplitude) to root.b_lfp
%
% For all root.b_lfp, adds theta filtered signal and theta phase vectors to
% speed up further analysis
if isempty(root.b_lfp)
disp('No LFP data was loaded, adding all root.path_lfp');
root = root.Load... |
760357a5666b640cd284516bb582cc1c7222eb7f6d1610536ebe5b6231f8222b | MATLAB | 635 | 30 | function slice=ea_contrast(slice,contrast,offset)
% Enhance slice contrast
if ~exist('contrast','var')
contrast=1;
end
if ~exist('offset','var')
offset=0;
end
if ~isa(slice,'double')
slice=double(slice);
end
ispositive=ea_nanmin(slice(:))>=0;
if sum(slice(:)~=0)
slice(slice(:)~=0)=contrast*ea_nanzsc... |
ce7e232246fdcd3bf021489073ee3cf5f2d577f77cb283abc79a5ed137b78d2e | MATLAB | 636 | 28 | function compilefma
% compilefma - Compile C/C++ functions in FMAToolbox
% Move to the 'FMAToolbox' directory, compile, and move back
path = fileparts(which('FMAToolbox'));
currentDir = pwd;
cd(path);
processDir;
cd(currentDir);
function processDir
files = dir;
for i = 1:length(files),
if strcmp(files(i).name,'.')... |
8926e68a1eb87edf55cf1c91fd9d922be8772069acb942c83286eaa321c6aeca | MATLAB | 637 | 28 | function uniqueStrings = uniqe_cell_string(c)
% uniqe string from a cell-array containing only strings, ignores all
% non-strings.
nonStringCells = [];
for i=1:length(c) % remove non-string cells
if ~strcmp(class(c{i}),'char')
nonStringCells = [nonStringCells i];
end;
end;
c(nonStringCells) = [];
uniq... |
58fa147650444b290188bceb8b6aa38fe45f7e9821850c7561bfb73405fb963b | MATLAB | 638 | 23 | % Normalize PET with respect to cerebellum grey matter.
% Written by Nanbo Sun and CBIG under MIT license: https://github.com/ThomasYeoLab/CBIG/blob/master/LICENSE.md
mri = MRIread(Mask_file);
vol = mri.vol;
mri_size = size(vol);
mask_vol1d = reshape(vol, [mri_size(1)*mri_size(2)*mri_size(3) 1]);
mri = MRIread(MRI_fi... |
754ad2f08a50d98c9c4cae1fc9398f56d6d2cd44b619323ba0651ebe691173ae | MATLAB | 638 | 16 | function y = geomean( varargin )
%GEOMEAN Geometric mean.
% GEOMEAN(X) = GEO_MEAN(X) = PROD(X).^(1/LENGTH(X)). We have replaced this
% function with GEO_MEAN to better match our function naming conventions.
% Please start using it instead.
warning( 'CVX:Renamed', [ ...
'The function "geomean" has been ren... |
964e3903cd8d17f0add780658edc67b7e5d4cf0762eb341f754b51b3323b0e6a | MATLAB | 639 | 28 | % Local Regression and Likelihood, Figure 8.1.
%
% Discrimination/Classification, simple example using
% logistic regression.
%
% Author: Catherine Loader
%
% NEED: level=0.5 for contour plot.
load cltrain;
fit = locfit([x1 x2],y,'family','binomial','scale',0);
figure('Name','fig8_1: logistic regression');
lfplot(fit,... |
ab2454f1eaef9fb6d060a860775b0dffd06826ac5e938fadb6c42b1a519ed10b | MATLAB | 639 | 23 | function delF = dFcalc(rawF,baseIDX,varargin)
if ~isempty(varargin)
traceDim=varargin{1};
else
traceDim=1;
end
if traceDim==1
if ~iscell(rawF)
delF = rawF(:,baseIDX(1):end)-nanmean(rawF(:,baseIDX(1):baseIDX(2)),2);
else
delF = cellfun(@(c) c(:,baseIDX(1):end)-nanmean(c(:,base... |
0f0f802fab552b81bb52087bb1c07bb6a2cc0729a7470dbb87e43d0f96e1b126 | MATLAB | 640 | 24 | function dag = test_dag(A,varargin)
% TEST_DAG Tests if a graph is directed and acyclic
%
% dag = test_dag(A) returns 1 if A is the adjacency matrix for a dag and
% returns 0 otherwise. This function just calls topological order and
% checks the output to determine if the graph is a dag. It is provided
% merely for e... |
34a48d7ce84bcf03c1aae4e086df5fdbdae154b412f9d1b1de48f49c6f13ef82 | MATLAB | 640 | 25 | function plane=surfplane(node,face)
%
% plane=surfplane(node,face)
%
% plane equation coefficients for each face in a surface
%
% author: Qianqian Fang, <q.fang at neu.edu>
%
% input:
% node: a list of node coordinates (nn x 3)
% face: a surface mesh triangle list (ne x 3)
%
% output:
% plane: a (ne x 4) array, i... |
7c6c991fcf7b9049182791525c37c7b8eb962cb258766d1b6430de30bae19959 | MATLAB | 641 | 28 | % datlim() - return min and max of a matrix
%
% Usage:
% >> limits_vector = datlim(data);
%
% Input:
% data - numeric array
% Outputs:
% limits_vector = [minval maxval]
%
% Author: Scott Makeig, SCCN/INC/UCSD, May 28, 2005
function [limits_vector] = datlim(data)
if ~isnumeric(data)
erro... |
91d490d79468ffdb44ca24c33fa8afdf254a313dd954451a1d335355a82748ad | MATLAB | 641 | 19 | %
% Calculate protected exceedance probabilities using VBA toolbox
%
% pmp: shape (nModels x nSubjects) z counts or point posterior estimate
% pep: shape (nModels)
%
%% Sequential HLM
path_root = getenv('DECIDENET_PATH');
path_vba = fullfile(path_root, 'data/main_fmri_study/derivatives/jags/vba');
load(fullfile(path_vb... |
efd89461afca3c7190aa8af4d204632398602b0e29a7c6daf17dbd14ff95dff3 | MATLAB | 641 | 21 | function events = NewEvents(times,description)
%NewEvents - Create events structure.
%
% USAGE
%
% events = NewEvents(times,description)
%
% times event timestamps
% description (common) event description
% Copyright (C) 2008-2011 by Michaël Zugaro
%
% This program is free software; yo... |
38dc22789897c3d89975dcccbeb968869351e4f584466fde50c3eddbdc7ca8ee | MATLAB | 642 | 35 | function [X,V,E,F]=mesheuler(face)
%
% [X,V,E,F]=mesheuler(face)
%
% Euler's charastistics of a mesh
%
% author: Qianqian Fang, <q.fang at neu.edu>
%
% input:
% face: a closed surface mesh
%
% output:
% X: Euler's charastistics
% V: number of vertices
% E: number of edges
% F: number of faces
%
% -- this fu... |
6d233ac56cc5e9921459134f4aba12db281bbe5fb766d235a523de2636740e49 | MATLAB | 642 | 19 | function [Xpix,Ypix,FrameRate]=findkeyparams_newThor()
%use this function to get the FOV and the framerate of aquisition
%you have to parse the XML file from thor.
%this sucks and is definitely not elegent
disp('Show me where the XML file is for any experiment from this set');
[matexpfile,matexppath]=uigetfile('*.... |
b5d7507467d32ed4c07a9e7a472fe0e4602e916e2d5405b5a3fa9335ba76e804 | MATLAB | 642 | 14 | function varargout = Surr_PseudoPeriodic(varargin)
%SURR_PSEUDOPERIODIC (deprecated) Use surr_pseudo_periodic instead.
% Surr_PseudoPeriodic has been renamed to surr_pseudo_periodic. This shim forwards every argument and
% output unchanged, so existing scripts keep working, and warns once per
% session.
%
% Sil... |
c41c0f5892a129fd17b2bcf11e61db2443f1e5ada185ec7c14bfbf689ea6fd56 | MATLAB | 642 | 28 | function Lambda=BarycentricCoordinatesTetrahedron(p1,p2,p3,p4,rx,ry,rz)
% Edge Vectors
r1 = (p2-p1); r2 = (p3-p1);
r3 = (p4-p1); r4 = (p3-p2);
r5 = (p2-p4); r6 = (p4-p3);
% Jacobian determinant
J = dot(cross(r1,r2),r3);
% Lambda Gradient
g1 = cross(r4,r5)/J;
g2 = cross(r2,r3)/J;
g3 = cross(r3,r1)/J;
... |
fa83dd79643ea4d610a2dee091c59322e1bb247d28bf8c7a6cb79e53818f5c80 | MATLAB | 642 | 18 | % [data, units, names] = ABF.load(filename)
% Load abf files from Axon.
%
% This is currently a function draft and may only work for special cases
% (e.g. one channel and gap-free mode).
% 2020-03-02. Leonardo Molina.
% 2023-11-09. Last modified.
function [data, units, names, header] = load(filename)
[da... |
447ea42944bc9a184bf35f5b6af8bf569da76401722949a26ab4c6a0aa5b7773 | MATLAB | 643 | 25 | function X = myPLS_norm(X,num_groups,subj_grouping,mode)
% Normalization
switch mode
case 1
X = zscore(X);
case 2
for iter_group = 1:num_groups
idx = find(subj_grouping == iter_group);
X(idx,:) = zscore(X(idx,:));
end
case 3
... |
c33f64bc7398ab2ba00fd85dab71794ebc48694e85fa97158440c8f265f1cd9e | MATLAB | 643 | 22 | function epsilon = readExtinctionCoeffs(excoefTxtPath, lambdas)
%READEXTINCTIONCOEFFS Read 2-column HbO/HbR extinction coefficients.
% excoefTxtPath: text file with columns [lambda nm, eps_HbO, eps_HbR]
% lambdas : vector of wavelengths to extract (e.g., [760 850])
% Returns epsilon as size numel(lambdas) x 2
T ... |
12de57b0b75cbe8b2f2da8d1b176f984df0977684e13f75a9ed3c809d6fa317b | MATLAB | 644 | 31 | function [normX,Bx,By]=normalizepdf(X)
% Forces the pdf of data to have a normal distribution using a data adaptive lookup table.
%
% [normX,Bx,By]=normalizepdf(X)
%
% normX=N(X) where N is an data adaptive monotonically increasing function.
% normX will have zero mean and unit variance.
%
% Bx,By describes... |
46bee3c975c4af7385aa73ad5d5fe4380a9109bd082b13c6a606bb510a1ebfc0 | MATLAB | 644 | 24 | function h = createStopButton
hmain = gcf;
pos = get(hmain,'Position');
h = figure(539375677);
%set(h,'WindowStyle','modal');
%set(handle,'title','FiberGT Progress Control');
set(h,'NumberTitle','off');
set(h,'resize','off');
set(h,'MenuBar','none')
set(h,'ToolBar','none')
set(h,'Visible','off')
set(h,'Tag','stopbutt... |
7b8cddcde84c815c3b12bfc58357b3eace9e2f692b560d6166f48314b4ecb243 | MATLAB | 644 | 18 | function [adfreq, n, ad] = plx_ad_span(filename, ch, startCount,endCount)
import CMBHOME.PLX2Mat.*
% plx_ad_span(filename, channel): Read a span of a/d data from a .plx file
%
% [adfreq, n, ad] = plx_ad_span(filename, ch,startCount,endCount)
%
% INPUT:
% filename - if empty string, will use File Open dialog
% start... |
d185733f02c9f0919fe110ff4c7f75c87c8ae49eec09d12c6da0ad4468dea026 | MATLAB | 644 | 21 | function sedumi_binary_error()
%Throw an error indicating the sedumi binaries are not available
if exist('OCTAVE_VERSION','builtin'),
software = 'Octave';
else
software = 'Matlab';
end
fs = filesep;
mpath = mfilename('fullpath');
temp = strfind( mpath, fs );
mpath = mpath( 1 : temp(end) - 1 );
error( 'SeDuMi... |
d3bdec94a5c511b6e317b20852d413c6f8ee0eae64951503a886fedefd6bedf3 | MATLAB | 644 | 21 | function ea_reconstruction2acpc(options)
load(options.subj.recon.recon, 'reco');
for iside=1:length(options.sides)
side=options.sides(iside);
for c=1:size(reco.native.coords_mm{side}(:,1),1)
cfg.xmm=reco.native.coords_mm{side}(c,1);
cfg.ymm=reco.native.coords_mm{side}(c,2);
cfg.zmm=rec... |
c1a34481ae6c9292540400912a7ca865897fc5000530ce59327bc6cd525fae14 | MATLAB | 645 | 19 | function [ pc ] = control_analyze( e,s,b,TYPE )
globalsConditions;
close all;
data = dlmread(sprintf('e%dv%db%dc1/e%dv%db%dc1.log',e,s,b,e,s,b));
pc = length(find(data(:,COL_RESPONSE)==1))./size(data,1);
directions = unique(data(:,COL_DIR)); % define directions
for d=1:length(directions)
sel = find(data(:,C... |
580047dcb988f9467f5801cc5277d8fe8134d414d40558435b2f6e7d65bdbada | MATLAB | 646 | 32 | function f=rect(t,w,lag)
% Function f=rect(t,w,lag) = Rect(t-lag/w)
%
% w is the rectangle function width in time
% lag is the location of the center of the rectangle
% if lag is a vector, multiple rectangles with lags will be generated
ff=zeros([length(lag) length(t)]);
fe=1e2;
%if (t(1)-lag>=0),
% for ... |
9330f004d4ac0306e5209d4caa46290ccbdbcb34f230c75b31fd387f67490f50 | MATLAB | 646 | 25 | function plotAreaROIsCCF(dorsalMaps, allROIs, areas)
% Plots the ROI centroids colored by areas
% Figure
allenMapSMc(dorsalMaps) % Creates figure by itself
% Paper ready figure/axis formatting
panelwidth = 2.25;
panelheight = 3;
leftoffset = 0.5;
bottomoffset = 0.5;
formatFigure(gcf, panelwidth, panelheight, leftoffs... |
95e3d44f14e110457c9fb38d7afd7761d0079031344887e3d94f4e5c0979cbb2 | MATLAB | 646 | 22 | function x = cvx_accept_convex( x )
global cvx___
if isa( x, 'cvx' ),
t = cvx_vexity( x ) > 0;
if any( t( : ) ),
prob = cvx___.problems(end).self;
if all( t ),
src = x;
dst = newtemp( prob, size( src ) );
x = dst;
else
src = x( t... |
552194c025d80f5d9545f85ecd846d86766e0f9b926cd53f30757f971c34ec8f | MATLAB | 647 | 22 | function x = cvx_accept_concave( x )
global cvx___
if isa( x, 'cvx' ),
t = cvx_vexity( x ) < 0;
if any( t( : ) ),
prob = cvx___.problems(end).self;
if all( t ),
src = x;
dst = newtemp( prob, size( src ) );
x = dst;
else
src = x( ... |
5f9131627ed85e5436cb591e6cf35d97e3e170d862e0a4123ee24956cf3e2886 | MATLAB | 647 | 17 | % Local Regression and Likelihood, Figure 6.3.
% Author: Catherine Loader
%
% Local smooth of CO2 dataset. Estimate the main trend,
% then use periodic smoothing of the residuals to estimate
% the annual effect.
%
% A periodic smooth is specified by 'style','a'.
% Note that year+month/12 scales the predictor to... |
9e711a779185c0236129b689c10e688b121a4c59f0b7d6c3a66ad5600bb2e5cd | MATLAB | 647 | 25 | function x = touch( p, x, iseq )
global cvx___
if nargin < 3, iseq = false; end
if isa( x, 'cvx' ),
p = p.index_;
b = cvx_basis( x );
y = any( b, 2 );
if iseq,
cvx___.canslack( y ) = false;
end
v = cvx___.problems( p ).t_variable;
nv = size( v, 1 );
ny = length( y ... |
d35ca25d82e27b683cd9d9d579ef7a76a9647cbffe76461ec30b444aebcefeb2 | MATLAB | 647 | 27 | % Weighted analytic center of a set of linear inequalities
% Joëlle Skaf - 04/29/08
%
% The weighted analytic center of a set of linear inequalities:
% a_i^Tx <= b_i i=1,...,m,
% is the solution of the unconstrained minimization problem
% minimize -sum_{i=1}^m w_i*log(b_i-a_i^Tx),
% where w_i... |
234175603b91a02feeada582a715bbcb2f425574f9168730fc099ff4f82e8d9b | MATLAB | 648 | 16 | function z = mpower( x, y )
% Disciplined convex/geometric programming information for MPOWER (^):
% The CVX version of the matrix power function Z=X.^Y supports only
% the case where X and Y are scalars. In such instances, the rules
% are identical to those outlined in the help for CVX/POWER.
if len... |
8ae866b4be2cf25f329159bfc4f93e7dba4d0df0bbda91cc9ff14af1cc786088 | MATLAB | 649 | 31 | function r = CBIG_find_maxLikeRun(kDir)
dirList = dir([kDir 'r*']);
maxLogLike = -inf;
figure;
hold on;
for idx = 1:numel(dirList)
runName = dirList(idx).name;
try
logLikes = load([kDir runName '/likelihood.dat']);
logLike = logLikes(end, 1);
runID = str2num(runName(2:end));
... |
c4fa8caab3cb10a5d7347d27ab1b9bcdb3f7a068ccaa91de168f1b6f81b9f713 | MATLAB | 649 | 29 | function [ X ] = nanInterp( X, method)
% Interpolates all Nan's in the input vector, according to the second input
% argument "method". Defaults to nearest neighbor interpolation.
if ~exist('method','var'), method = 'nearest'; end;
if all(isnan(X))
X=zeros(size(X));
return
elseif isscalar(X)||isempty(X)
... |
d3f38258dcdc2bf57d39ace6b8b46b7473999e231738ae564a63ff0e4221faf6 | MATLAB | 649 | 27 | function v = cvx_classify( x )
% Classifications:
% 1 - negative constant
% 2 - zero
% 3 - positive constant
% 4 - complex constant
% 5 - concave
% 6 - real affine
% 7 - convex
% 8 - complex affine
% 9 - log concave
% 10 - log affine
% 11 - log convex monomial
% 12 - log convex posynomial
% 13 ... |
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