sha256 stringlengths 64 64 | language stringclasses 28
values | size int32 1 491k | lines int32 1 23.2k | content stringlengths 1 200k |
|---|---|---|---|---|
da564ffca771e12643872d93c24df3697a2b0497acf475060e6158c9baf2deae | NEURON | 1,130 | 73 | begintemplate MCDL07
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: 0, parent: $s.parent
create Soma
public Soma
// Group: {name=all, sectio... |
da753a10ea90d78d6248065c13e0e477cbd637dc077346447e01f4664563a213 | NEURON | 1,130 | 73 | begintemplate MCVL09
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: 0, parent: $s.parent
create Soma
public Soma
// Group: {name=all, sectio... |
da821167600cff3987847f454ebd79322c81a918483f1d7deb0636099fd5c389 | NEURON | 1,130 | 73 | begintemplate MCVR11
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: 0, parent: $s.parent
create Soma
public Soma
// Group: {name=all, sectio... |
dc3f89c3007399b2dbe54081f60ac5ff2cf641a467fac88325132f6be17f1de2 | NEURON | 1,130 | 73 | begintemplate MCVR23
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: 0, parent: $s.parent
create Soma
public Soma
// Group: {name=all, sectio... |
df25db331451872b5e1dc2962d66c4fa598ec5190b737b1011a3c93835fe6624 | NEURON | 1,130 | 73 | begintemplate MCVL02
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: 0, parent: $s.parent
create Soma
public Soma
// Group: {name=all, sectio... |
df6fc2f93dc9e9be1a85622566a083dd809c26fe71bfb0cbf58ff9ce4133da5e | NEURON | 1,130 | 73 | begintemplate MCVR13
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: 0, parent: $s.parent
create Soma
public Soma
// Group: {name=all, sectio... |
e0612f34bd0b02dabb9da56a591339d25d3e294093ac0da18d4456444555efd2 | NEURON | 1,130 | 73 | begintemplate MCDR09
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: 0, parent: $s.parent
create Soma
public Soma
// Group: {name=all, sectio... |
e1b8119cba8edb3d1b60a4d85b99e98f5adaf6e99d670537b5d073e6af2e2dc6 | NEURON | 1,130 | 73 | begintemplate MCVL24
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: 0, parent: $s.parent
create Soma
public Soma
// Group: {name=all, sectio... |
e35d8584f125080f0b22829f8dc9f22b01fef4e165fc9eb8dbb66e8fa74bcb74 | NEURON | 1,130 | 73 | begintemplate MCDL14
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: 0, parent: $s.parent
create Soma
public Soma
// Group: {name=all, sectio... |
ea894fa22d61599885113ef04e16a84646e3089cb1e3793b826d30a2546eac4f | NEURON | 1,130 | 73 | begintemplate MCDL02
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: 0, parent: $s.parent
create Soma
public Soma
// Group: {name=all, sectio... |
ec5d54ed4125c46dc530c6642e5818f13d51174f24b7cccf618013fda943bc7d | NEURON | 1,130 | 73 | begintemplate MCVL15
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: 0, parent: $s.parent
create Soma
public Soma
// Group: {name=all, sectio... |
f09232d387852ed98ccb4321be9a0b653428ff8ad32f73642dacf224bfa64672 | NEURON | 1,130 | 73 | begintemplate MCVR09
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: 0, parent: $s.parent
create Soma
public Soma
// Group: {name=all, sectio... |
f261bb22cfc17ba13e4676cf9512841cd2f61a1f53e46234531979668f38a024 | NEURON | 1,130 | 73 | begintemplate MCDL19
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: 0, parent: $s.parent
create Soma
public Soma
// Group: {name=all, sectio... |
f56442b5acdec6b87b658af88937d5bad7015f552529ca547936c691656318ff | NEURON | 1,130 | 73 | begintemplate MCDL13
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: 0, parent: $s.parent
create Soma
public Soma
// Group: {name=all, sectio... |
faf9266c12f073a20e23b720f55b9a8cbe6a76a2f756b540b02c7334ab264b50 | NEURON | 1,130 | 73 | begintemplate MCDL23
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: 0, parent: $s.parent
create Soma
public Soma
// Group: {name=all, sectio... |
e4625dd9242dcf444a815eb4ac27577731e031d7b1c470aaaf7738639014ee61 | NEURON | 1,144 | 76 | TITLE irk current for C. elegans neuron model
COMMENT
channel type: voltage-gated potassium channel
model and parameters from:
Nicoletti, M., et al. (2019). "Biophysical modeling of C. elegans neurons: Single ion currents and whole-cell dynamics of AWCon and RMD." PLoS One 14(7): e0218738.
ENDCOMMENT
UNITS {
(... |
d370c5f9fdf6391a3cbdd6d918ff39af8eb6aff08950774081be13bdbc159b3d | NEURON | 1,150 | 76 | TITLE kcnl current for C. elegans neuron model
COMMENT
channel type: calcium-related potassium channel
regulated soly by calcium concentration in microdomain surrounding the channel
model and parameters from:
Nicoletti, M., et al. (2019). "Biophysical modeling of C. elegans neurons: Single ion currents and whole-ce... |
7fc737d1b0f22ddf247acecdc857f2d24aca7e39edd7ebba07b333f8df33c3de | NEURON | 1,152 | 73 | begintemplate GenericMuscleCell
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: 0, parent: $s.parent
create Soma
public Soma
// Group: {name=... |
f1c91dff896290ca275c3522c3f946d62ddf200d34ddef5b3202c5e0e8891698 | NEURON | 1,157 | 76 | TITLE irk current for C. elegans neuron model
COMMENT
channel type: voltage-gated potassium channel
model and parameters from:
Nicoletti, M., et al. (2019). "Biophysical modeling of C. elegans neurons: Single ion currents and whole-cell dynamics of AWCon and RMD." PLoS One 14(7): e0218738.
ENDCOMMENT
UNITS {
(... |
d822a1b1ccdc61aa572fc32f11a2955bc113e10372eda4b0d7acf1bae23af648 | NEURON | 1,194 | 76 | TITLE egl2 current for C. elegans neuron model
COMMENT
channel type: voltage-gated potassium channel
patch clamp data from:
Weinshenker, D. , et al. "Block of an ether-a-go-go-like K(+) channel by imipramine rescues egl-2 excitation defects in Caenorhabditis elegans. " Journal of Neuroscience the Official Journal of... |
0d70c85bc3e7edbbbd28b4ab25c532f038c9f32cd8e7fe88893c598acdd07619 | NEURON | 1,207 | 76 | TITLE egl2 current for C. elegans neuron model
COMMENT
channel type: voltage-gated potassium channel
patch clamp data from:
Weinshenker, D. , et al. "Block of an ether-a-go-go-like K(+) channel by imipramine rescues egl-2 excitation defects in Caenorhabditis elegans. " Journal of Neuroscience the Official Journal of... |
77a04c90bebdd0f13807eb04649265589612e83c9aa5b3d6b283b9b207da1d97 | NEURON | 1,219 | 100 | TITLE CA1 KM channel from Mala Shah
: M. Migliore June 2006
UNITS {
(mA) = (milliamp)
(mV) = (millivolt)
}
PARAMETER {
v (mV)
ek
celsius (degC)
gbar=.0001 (mho/cm2)
vhalfl=-35 (mV)
kl=-10
vhalft=-35 (mV)
a0t=0.009 (/ms)
zetat=7 (1)
... |
53b8d944e833db7e8f0f0bdcdabd95f286b5250cb1dbea2d23d6e8e360e5f103 | NEURON | 1,253 | 75 | TITLE the microscale internal calcium concentration
COMMENT
Internal calcium concentration calculated in response to a calcium current.
model and parameters from:
Nicoletti, M., et al. (2019). "Biophysical modeling of C. elegans neurons: Single ion currents and whole-cell dynamics of AWCon and RMD." PLoS One 14(7): e... |
6d391854d818df12767484d3414fe95e01d5618d5554e3cb9b16ae0875c69067 | NEURON | 1,254 | 75 | TITLE the microscale internal calcium concentration
COMMENT
Internal calcium concentration calculated in response to a calcium current.
model and parameters from:
Nicoletti, M., et al. (2019). "Biophysical modeling of C. elegans neurons: Single ion currents and whole-cell dynamics of AWCon and RMD." PLoS One 14(7): e... |
818978ee9a4577a5b622895568e5430a6ef0e635755b5eb87c07dde63e5ae877 | NEURON | 1,261 | 53 | TITLE the nanoscale internal calcium concentration
COMMENT
Internal calcium concentration calculated in response to a calcium current.
model and parameters from:
Nicoletti, M., et al. (2019). "Biophysical modeling of C. elegans neurons: Single ion currents and whole-cell dynamics of AWCon and RMD." PLoS One 14(7): e0... |
48247361a00c51f7d6ad91a2390bd8b737e1b068bb8558fd66e78f9a39f8a473 | NEURON | 1,289 | 71 | /*
Taken from the following article with little modification:
Sterratt DC, Groen MR, Meredith RM, van Ooyen A (2012)
Spine calcium transients induced by synaptically-evoked action potentials
can predict synapse location and establish synaptic democracy
PLoS Comput Biol 8(6):e1002545
*/
begintemplate Spine
publi... |
cb957ff1db5854a12e9b362333a8fe1e0884d80bb2692c088302679337a49b3f | NEURON | 1,312 | 80 | TITLE the microscale internal calcium concentration
COMMENT
Internal calcium concentration calculated in response to a calcium current.
model and parameters from:
Nicoletti, M., et al. (2019). "Biophysical modeling of C. elegans neurons: Single ion currents and whole-cell dynamics of AWCon and RMD." PLoS One 14(7): e... |
a604b487aba00cf178ba82d34ebda3ccddef28a430a03ad0fe1894b9f2d81ddd | NEURON | 1,337 | 86 | TITLE shk1 current for C. elegans neuron model
COMMENT
channel type: voltage-gated potassium channel
model and parameters from:
Nicoletti, M., et al. (2019). "Biophysical modeling of C. elegans neurons: Single ion currents and whole-cell dynamics of AWCon and RMD." PLoS One 14(7): e0218738.
ENDCOMMENT
UNITS {
... |
4d07a4e203dba88272bcbe0223154e2a91b57da2a1a64099a7011b5b3d07aad9 | NEURON | 1,363 | 86 | TITLE shk1 current for C. elegans neuron model
COMMENT
channel type: voltage-gated potassium channel
model and parameters from:
Nicoletti, M., et al. (2019). "Biophysical modeling of C. elegans neurons: Single ion currents and whole-cell dynamics of AWCon and RMD." PLoS One 14(7): e0218738.
ENDCOMMENT
UNITS {
... |
b22e561619de74d5b6b4aec0a181fdfea1a1d554e542c5a05b0947630e408eab | NEURON | 1,373 | 87 | TITLE kvs1 current for C. elegans neuron model
COMMENT
channel type: voltage-gated potassium channel
model and parameters from:
Nicoletti, M., et al. (2019). "Biophysical modeling of C. elegans neurons: Single ion currents and whole-cell dynamics of AWCon and RMD." PLoS One 14(7): e0218738.
ENDCOMMENT
UNITS {
... |
7e497d4b115a44b917931fa5daafc86388894e3abf3de28a74bf4ce6417eb5eb | NEURON | 1,379 | 54 | //parameters of the CA1 PC
celsius = 34
v_init = -65
//possibility to set the distribution of the leak conductance: constant, linear, exponential or sigmoid-like
user_Rm = 1e4 //user-defined Rm, Ohm*cm2
user_e_pas = -65 //user-defined leak conductance reversal potential, mV
user_Ra = 150 //user-defined ax... |
13f41c6c385b56c10d0289a4b1a6ca76e0fb003875966ba940a553c4592a4f43 | NEURON | 1,391 | 87 | TITLE cca1 current for C. elegans neuron model
COMMENT
channel type: voltage-gated calcium channel
model and parameters from:
Nicoletti, M., et al. (2019). "Biophysical modeling of C. elegans neurons: Single ion currents and whole-cell dynamics of AWCon and RMD." PLoS One 14(7): e0218738.
ENDCOMMENT
UNITS {
(n... |
3a7f37db5f525623540b82381e43e83fc591f31344ab197c7b38a5e37d5798bb | NEURON | 1,399 | 87 | TITLE kvs1 current for C. elegans neuron model
COMMENT
channel type: voltage-gated potassium channel
model and parameters from:
Nicoletti, M., et al. (2019). "Biophysical modeling of C. elegans neurons: Single ion currents and whole-cell dynamics of AWCon and RMD." PLoS One 14(7): e0218738.
ENDCOMMENT
UNITS {
... |
38a2a7ded82758691dda8bbe46525d3f275bd96d09e5f5c2ff8bd7234902c857 | NEURON | 1,417 | 87 | TITLE cca1 current for C. elegans neuron model
COMMENT
channel type: voltage-gated calcium channel
model and parameters from:
Nicoletti, M., et al. (2019). "Biophysical modeling of C. elegans neurons: Single ion currents and whole-cell dynamics of AWCon and RMD." PLoS One 14(7): e0218738.
ENDCOMMENT
UNITS {
(n... |
fe3f54b3f4e238c09cfb6a40eb83ad9d86f7d94ea09f61bfa4c7c4acbb4e6567 | NEURON | 1,426 | 84 | TITLE Alpha-function synaptic current, with NET_RECEIVE
COMMENT
This model works with variable time-step methods (although it may not
be very accurate) but at the expense of having to maintain the queues
of spike times and weights.
Andrew P. Davison, UNIC, CNRS, May 2006
ENDCOMMENT
DEFINE MAX_SPIKES 1000
DEFINE CUTO... |
163124dbf01503ffb66b5ffb197c5d65c52286dbb7a21231c15cdeb5fa627947 | NEURON | 1,465 | 70 | objref ampasyn, ns, nc, vc
proc newparams() { localobj fil setting
fil = new File()
fil.ropen($s1)
setting = fil.scanvar()
nc.weight[0] = fil.scanvar()
nc.delay = fil.scanvar()
ampasyn.tau1 = fil.scanvar()
ampasyn.tau2 = fil.scanvar()
fil.close() }
create soma
insert pas
insert hh
access soma
L = 17.84
... |
cf45c1ea1ddb8c292d103f06f079056cb333789ae6ae3487a65a5b530dddac44 | NEURON | 1,477 | 86 | TITLE Dual-exponential model of NMDA receptors
COMMENT
Adapted from "Contribution of NMDA Receptor Channels to the Expression of LTP in the
Hippocampal Dentate Gyrus by Zhuo Wang," Dong Song, and Theodore W. Berger
Hippocampus, vol. 12, pp. 680-688, 2002.
ENDCOMMENT
NEURON {
POINT_PROCESS Exp2NMDA_iaf
RANGE tau1, t... |
3e395a3bec0bc299f17abf782313fcce2f13ab5b395b64197600a2d8699dc76d | NEURON | 1,486 | 90 | TITLE unc2 current for C. elegans neuron model
COMMENT
channel type: voltage-gated calcium channel
model and parameters from:
Nicoletti, M., et al. (2019). "Biophysical modeling of C. elegans neurons: Single ion currents and whole-cell dynamics of AWCon and RMD." PLoS One 14(7): e0218738.
ENDCOMMENT
UNITS {
(n... |
ea469181d29bfc39a69d88bf19371a8f3a0df7a390e050ceb4299c66f5b10ef9 | NEURON | 1,494 | 86 | TITLE Exponential-function synaptic current, with NET_RECEIVE
COMMENT
This model works with variable time-step methods (although it may not
be very accurate) but at the expense of having to maintain the queues
of spike times and weights.
Andrew P. Davison, UNIC, CNRS, May 2006
Note: converted to Exponential current k... |
70631f19750a386e51e8107133f28193d424d683ac5ab1231103b02eaa8d572b | NEURON | 1,511 | 84 | TITLE Exponential-function synaptic current, with NET_RECEIVE
COMMENT
This model works with variable time-step methods (although it may not
be very accurate) but at the expense of having to maintain the queues
of spike times and weights.
Maria changed this to an exponential current synapse, 24 Sept 2012
Andrew P. Davi... |
7080ffa84a50626a97f4cd2edf628cca46f22a548b34886572eaa6670aa5c2b3 | NEURON | 1,512 | 90 | TITLE unc2 current for C. elegans neuron model
COMMENT
channel type: voltage-gated calcium channel
model and parameters from:
Nicoletti, M., et al. (2019). "Biophysical modeling of C. elegans neurons: Single ion currents and whole-cell dynamics of AWCon and RMD." PLoS One 14(7): e0218738.
ENDCOMMENT
UNITS {
(n... |
8e1525db89d28854bec21efc372fb829ad1b3cdefa2a555bad91c4ceb384f5bc | NEURON | 1,535 | 92 | TITLE egl36 current for C. elegans neuron model
COMMENT
Channel type: voltage-gated potassium channel.
Model, parameters and patch clamp data from:
Johnstone, D. B. , et al. "Behavioral Defects in C. elegans egl-36 Mutants Result from Potassium Channels Shifted in Voltage-Dependence of Activation." Neuron 19.1(1997)... |
28f93aa2fc70c8d82857a62b2fcf837533ea89eb8bb46e321171e39b433d3c24 | NEURON | 1,541 | 44 |
/*
Copyright (c) 2015 EPFL-BBP, All rights reserved.
THIS SOFTWARE IS PROVIDED BY THE BLUE BRAIN PROJECT ``AS IS''
AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO,
THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE BLUE BRAIN PROJ... |
e9fcc9f91d76c0ed92a5823411ad46e517f31add3ee2dc254b510e1f6276456f | NEURON | 1,543 | 44 |
/*
Copyright (c) 2015 EPFL-BBP, All rights reserved.
THIS SOFTWARE IS PROVIDED BY THE BLUE BRAIN PROJECT ``AS IS''
AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO,
THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE BLUE BRAIN PROJ... |
0ece49f11ad3ad16eba5d2777e7ca8c4019338b2d07067ae4d49aee5a9b6fffd | NEURON | 1,565 | 44 |
/*
Copyright (c) 2015 EPFL-BBP, All rights reserved.
THIS SOFTWARE IS PROVIDED BY THE BLUE BRAIN PROJECT ``AS IS''
AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO,
THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE BLUE BRAIN PROJ... |
3b890e425aeb8c452bd1ada82acfbc819eada126d074fb9e7747abef51bd2f59 | NEURON | 1,565 | 44 |
/*
Copyright (c) 2015 EPFL-BBP, All rights reserved.
THIS SOFTWARE IS PROVIDED BY THE BLUE BRAIN PROJECT ``AS IS''
AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO,
THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE BLUE BRAIN PROJ... |
93df5c5e3ea9fc92b2e612566911b6dcb9aef38b2c6b4ffbe65492a6c87b11cc | NEURON | 1,565 | 44 |
/*
Copyright (c) 2015 EPFL-BBP, All rights reserved.
THIS SOFTWARE IS PROVIDED BY THE BLUE BRAIN PROJECT ``AS IS''
AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO,
THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE BLUE BRAIN PROJ... |
b8ab800c0a9fd3e0acd190a5b51423f94d45ba2fc86e0e326c40a799f03a44ba | NEURON | 1,565 | 44 |
/*
Copyright (c) 2015 EPFL-BBP, All rights reserved.
THIS SOFTWARE IS PROVIDED BY THE BLUE BRAIN PROJECT ``AS IS''
AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO,
THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE BLUE BRAIN PROJ... |
9f3e66b1a7a5f9d435a0e344da40899fda1931d8ec7e34bfd3b5d34526d1c7a7 | NEURON | 1,566 | 84 | COMMENT
Two state kinetic scheme synapse described by rise time tau1,
and decay time constant tau2. The normalized peak conductance is 1.
Decay time MUST be greater than rise time.
The solution of A->G->bath with rate constants 1/tau1 and 1/tau2 is
A = a*exp(-t/tau1) and
G = a*tau2/(tau2-tau1)*(-exp(-t/tau1) + exp(-... |
48a01bd18aa07f75182d3cf90f338f86f498df9086276d94ebae2d256922d13d | NEURON | 1,572 | 44 |
/*
Copyright (c) 2015 EPFL-BBP, All rights reserved.
THIS SOFTWARE IS PROVIDED BY THE BLUE BRAIN PROJECT ``AS IS''
AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO,
THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE BLUE BRAIN PROJ... |
6f4ba4be38072b2bc1271c1b1f6d460bb4246711c0e390798eebff09673af877 | NEURON | 1,572 | 44 |
/*
Copyright (c) 2015 EPFL-BBP, All rights reserved.
THIS SOFTWARE IS PROVIDED BY THE BLUE BRAIN PROJECT ``AS IS''
AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO,
THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE BLUE BRAIN PROJ... |
c68d886e6b9c7d18ccf1b7d5478e23f8c1b5493f44874328c33481cc93dc2ddf | NEURON | 1,572 | 44 |
/*
Copyright (c) 2015 EPFL-BBP, All rights reserved.
THIS SOFTWARE IS PROVIDED BY THE BLUE BRAIN PROJECT ``AS IS''
AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO,
THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE BLUE BRAIN PROJ... |
4ed51923abf79a6a907e8f1870c059a233b4938269fe48988c23e3940833924d | NEURON | 1,583 | 92 | TITLE egl36 current for C. elegans neuron model
COMMENT
Channel type: voltage-gated potassium channel.
Model, parameters and patch clamp data from:
Johnstone, D. B. , et al. "Behavioral Defects in C. elegans egl-36 Mutants Result from Potassium Channels Shifted in Voltage-Dependence of Activation." Neuron 19.1(1997)... |
db5e0794288d7b711d9355f86b1ec24338f503f5840075f947031df6137924b3 | NEURON | 1,584 | 102 | TITLE kcnl current for C. elegans neuron model
COMMENT
channel type: calcium-related potassium channel
regulated soly by calcium concentration in microdomain surrounding the channel
model and parameters from:
Nicoletti, M., et al. (2019). "Biophysical modeling of C. elegans neurons: Single ion currents and whole-ce... |
306c60032cd63be2bd9746d22a363bb8f9253014808bb927b49430b97cdbdd54 | NEURON | 1,615 | 102 | TITLE irk current for C. elegans neuron model
COMMENT
channel type: voltage-gated potassium channel
model and parameters from:
Nicoletti, M., et al. (2019). "Biophysical modeling of C. elegans neurons: Single ion currents and whole-cell dynamics of AWCon and RMD." PLoS One 14(7): e0218738.
ENDCOMMENT
UNITS {
(... |
01c4222f0b8bdc085fba23c90b2e8d1421cb1d3f9a2292c7000e2b86eeb95c34 | NEURON | 1,633 | 102 | TITLE egl2 current for C. elegans neuron model
COMMENT
channel type: voltage-gated potassium channel
patch clamp data from:
Weinshenker, D. , et al. "Block of an ether-a-go-go-like K(+) channel by imipramine rescues egl-2 excitation defects in Caenorhabditis elegans. " Journal of Neuroscience the Official Journal of... |
2bbbf0f1f555d448c5df8c08d7a7e68a6ca3690a272abd902fd758f80bbe3eac | NEURON | 1,636 | 81 | COMMENT
Conceptual model: D current for a model of a fast-spiking cortical interneuron.
Authors and citation:
Golomb D, Donner K, Shacham L, Shlosberg D, Amitai Y, Hansel D (2007).
Mechanisms of Firing Patterns in Fast-Spiking Cortical Interneurons.
PLoS Comput Biol 3:e156.
Original implementation and program... |
51e314d5eabed45ff2033341c2406daf902ef0dad38c2596f7e477a078548314 | NEURON | 1,754 | 100 | TITLE egl19 current for C. elegans neuron model
COMMENT
voltage-gated calcium channel
model and parameters from:
Nicoletti, M., et al. (2019). "Biophysical modeling of C. elegans neurons: Single ion currents and whole-cell dynamics of AWCon and RMD." PLoS One 14(7): e0218738.
ENDCOMMENT
UNITS {
(nS) = (nanosie... |
abcdc035a0bff3f6093ff92c020c5545aded6e2890599fe73d435197101f5842 | NEURON | 1,767 | 109 | TITLE kqt3 current for C. elegans neuron model
COMMENT
voltage-gated potassium channel
ENDCOMMENT
UNITS {
(nS) = (nanosiemens)
(mV) = (millivolt)
(pA) = (picoamp)
(um) = (micron)
}
NEURON {
SUFFIX kqt3
USEION k READ ek WRITE ik
RANGE gbkqt3
}
PARAMETER {
gbkqt3 = 1 (nS/um2)
v... |
1909b43c7c6c026eee7e57abbb2f1d122f8db9ffcc61d7afc68d0d3d978aa640 | NEURON | 1,780 | 100 | TITLE egl19 current for C. elegans neuron model
COMMENT
voltage-gated calcium channel
model and parameters from:
Nicoletti, M., et al. (2019). "Biophysical modeling of C. elegans neurons: Single ion currents and whole-cell dynamics of AWCon and RMD." PLoS One 14(7): e0218738.
ENDCOMMENT
UNITS {
(nS) = (nanosie... |
7970af12b0d6eb98c41d59fc3517bd483af65254237ed4445e9439e59b29a775 | NEURON | 1,817 | 109 | TITLE kqt3 current for C. elegans neuron model
COMMENT
voltage-gated potassium channel
ENDCOMMENT
UNITS {
(nS) = (nanosiemens)
(mV) = (millivolt)
(pA) = (picoamp)
(um) = (micron)
}
NEURON {
SUFFIX kqt3
USEION k READ ek WRITE ik
RANGE gbkqt3, minf, tmf, tms, winf, sinf, tw, ts, mf, ms, ... |
4d1e00cdaa4d792dee2b52e40445dc52b5e2b03ca0dabb86a308a3db07f6127f | NEURON | 1,818 | 91 | COMMENT
Based on NMODL code for neuron_to_neuron_exc_syn
Code and comments have been normalized--that is,
they are now of the usual form employed in
NMODL-specified synaptic mechanisms.
Oddities that save neither storage nor time,
or preclude use with adaptive integration,
or deliberately introduce errors in an at... |
533005e4dca464ad0dcb9b8a6015adca099fbddd2b55498d63c714c614eb99db | NEURON | 1,818 | 91 | COMMENT
Based on NMODL code for neuron_to_neuron_exc_syn
Code and comments have been normalized--that is,
they are now of the usual form employed in
NMODL-specified synaptic mechanisms.
Oddities that save neither storage nor time,
or preclude use with adaptive integration,
or deliberately introduce errors in an at... |
8fc180f9759df35d3f947c1fe052bc2390029e0b99f58694310558e4d3283d88 | NEURON | 1,834 | 92 | COMMENT
Based on NMODL code for neuron_to_neuron_exc_syn
Code and comments have been normalized--that is,
they are now of the usual form employed in
NMODL-specified synaptic mechanisms.
Oddities that save neither storage nor time,
or preclude use with adaptive integration,
or deliberately introduce errors in an at... |
60ea3cd9097ac2b552b99efdccef5b08dff5ae244fc91edc3b62d36dfcb87ae8 | NEURON | 1,838 | 92 | COMMENT
Based on NMODL code for neuron_to_neuron_exc_syn
Code and comments have been normalized--that is,
they are now of the usual form employed in
NMODL-specified synaptic mechanisms.
Oddities that save neither storage nor time,
or preclude use with adaptive integration,
or deliberately introduce errors in an at... |
ec7139852fc5792a7fac72e141362bd0ae147d9bd5f9bc58a91fc2e3d15bfb74 | NEURON | 1,838 | 92 | COMMENT
Based on NMODL code for neuron_to_neuron_exc_syn
Code and comments have been normalized--that is,
they are now of the usual form employed in
NMODL-specified synaptic mechanisms.
Oddities that save neither storage nor time,
or preclude use with adaptive integration,
or deliberately introduce errors in an at... |
c8644d1eeaadd2c292e1578da881ae83d2dd12959cd3c3286accb774324ec936 | NEURON | 1,839 | 110 | TITLE kqt3 current for C. elegans neuron model
COMMENT
voltage-gated potassium channel
ENDCOMMENT
UNITS {
(nS) = (nanosiemens)
(mV) = (millivolt)
(pA) = (picoamp)
(um) = (micron)
}
NEURON {
SUFFIX kqt3
USEION k READ ek WRITE ik
RANGE gbkqt3, minf, tmf, tms, winf, sinf, tw, ts, mf, ms, ... |
222700af6edd7380646c4e021b3ce0a4255f2cbf64034dca1883b413cf6a1b40 | NEURON | 1,840 | 92 | COMMENT
Based on NMODL code for neuron_to_neuron_exc_syn
Code and comments have been normalized--that is,
they are now of the usual form employed in
NMODL-specified synaptic mechanisms.
Oddities that save neither storage nor time,
or preclude use with adaptive integration,
or deliberately introduce errors in an at... |
264456692e02d9d5dcff59a29ead0ec4056fee7be2be8ba125fbac287927e80e | NEURON | 1,840 | 92 | COMMENT
Based on NMODL code for neuron_to_neuron_exc_syn
Code and comments have been normalized--that is,
they are now of the usual form employed in
NMODL-specified synaptic mechanisms.
Oddities that save neither storage nor time,
or preclude use with adaptive integration,
or deliberately introduce errors in an at... |
65fd160bf7a49b7eedc63c8351e3d21b2b62737e2aeafc2f36b61622a8b9a798 | NEURON | 1,842 | 92 | COMMENT
Based on NMODL code for neuron_to_neuron_exc_syn
Code and comments have been normalized--that is,
they are now of the usual form employed in
NMODL-specified synaptic mechanisms.
Oddities that save neither storage nor time,
or preclude use with adaptive integration,
or deliberately introduce errors in an at... |
4e2765fb0989a0ab9f3051766ef06e334fd8b5e08dff518ace1a783ba3fe9565 | NEURON | 1,843 | 101 | TITLE shl1 current for C. elegans neuron model
COMMENT
channel type: voltage-gated potassium channel
model and parameters from:
Nicoletti, M., et al. (2019). "Biophysical modeling of C. elegans neurons: Single ion currents and whole-cell dynamics of AWCon and RMD." PLoS One 14(7): e0218738.
ENDCOMMENT
UNITS {
... |
5469b0d1a40a78f8c32a5e592e9898a6cb60d416a9966eaff5d39896ee9708e7 | NEURON | 1,862 | 101 | TITLE shl1 current for C. elegans neuron model
COMMENT
channel type: voltage-gated potassium channel
model and parameters from:
Nicoletti, M., et al. (2019). "Biophysical modeling of C. elegans neurons: Single ion currents and whole-cell dynamics of AWCon and RMD." PLoS One 14(7): e0218738.
ENDCOMMENT
UNITS {
... |
57651941d0cdf7a7e4763843f9d4621880b521bb360bc5b13e25ff78139ee177 | NEURON | 1,888 | 116 | TITLE shk1 current for C. elegans neuron model
COMMENT
channel type: voltage-gated potassium channel
model and parameters from:
Nicoletti, M., et al. (2019). "Biophysical modeling of C. elegans neurons: Single ion currents and whole-cell dynamics of AWCon and RMD." PLoS One 14(7): e0218738.
ENDCOMMENT
UNITS {
... |
a82b0376ccf509408eb4297567a105372258cb0612f3654c74909a351bf45d56 | NEURON | 1,924 | 56 | // function to load parameters from file // expects one argument: a string that contains the file name
proc newparams() { localobj fil setting
fil = new File()
fil.ropen($s1) // First line of the file contains "run parameters" we are not interested in // FIXME: not the most elegant way to skip a value, very dependen... |
032ff37d66b07783b1b5e263a409df566fc3ccdb666d9a2d1ccf9c2638866e17 | NEURON | 1,926 | 117 | TITLE kvs1 current for C. elegans neuron model
COMMENT
channel type: voltage-gated potassium channel
model and parameters from:
Nicoletti, M., et al. (2019). "Biophysical modeling of C. elegans neurons: Single ion currents and whole-cell dynamics of AWCon and RMD." PLoS One 14(7): e0218738.
ENDCOMMENT
UNITS {
... |
7350b3043048763c90cc981abd83dc3dcee77b68f89da6a660429055700f1652 | NEURON | 1,927 | 117 | TITLE cca1 current for C. elegans neuron model
COMMENT
channel type: voltage-gated calcium channel
model and parameters from:
Nicoletti, M., et al. (2019). "Biophysical modeling of C. elegans neurons: Single ion currents and whole-cell dynamics of AWCon and RMD." PLoS One 14(7): e0218738.
ENDCOMMENT
UNITS {
(n... |
1afe1b67e722ec82e6da6528bfdc2259182a9c2afba48d51e8312c8ef63b78d5 | NEURON | 1,952 | 110 | TITLE kqt3 current for C. elegans neuron model
COMMENT
voltage-gated potassium channel
ENDCOMMENT
UNITS {
(nS) = (nanosiemens)
(mV) = (millivolt)
(pA) = (picoamp)
(um) = (micron)
}
NEURON {
SUFFIX kqt3
USEION k READ ek WRITE ik
RANGE gbkqt3, minf, tmf, tms, winf, sin... |
9231d0c3e9f8629360c27cb8f238ffaf074b7a1c169bb528850c1a37b0eabee8 | NEURON | 2,020 | 120 | TITLE unc2 current for C. elegans neuron model
COMMENT
channel type: voltage-gated calcium channel
model and parameters from:
Nicoletti, M., et al. (2019). "Biophysical modeling of C. elegans neurons: Single ion currents and whole-cell dynamics of AWCon and RMD." PLoS One 14(7): e0218738.
ENDCOMMENT
UNITS {
(n... |
9b42b97a7d960055b04f85cf4aa80f5b42fa26406d5f42dac5af725e12b12e00 | NEURON | 2,103 | 106 | COMMENT
Based on NMODL code for neuron_to_neuron_exc_syn
Code and comments have been normalized--that is,
they are now of the usual form employed in
NMODL-specified synaptic mechanisms.
Oddities that save neither storage nor time,
or preclude use with adaptive integration,
or deliberately introduce errors in an at... |
9a994ed3c8a999028bcba3241403ef40725f1cd86cb935fcb016f792566efb13 | NEURON | 2,136 | 98 | TITLE esser_mech_pp.mod
NEURON {
SUFFIX esser_mech_pp
POINT_PROCESS esser_mech_pp
RANGE gNa_leak, gK_leak, theta_eq, tau_theta, tau_spike, tau_m, gspike, C, tspike, v_iaf, theta, v_iaf0, ena_iaf, ek_iaf, i_stim
RANGE ina_iaf, ik_iaf, ispike, i_total, v_tms
POINTER i_ampa, i_nmda, i_gabaa, i_... |
550e7f726879df0a937c13c0ce14e1548211ec23d9d36361b4355a9cfeb0bc5b | NEURON | 2,193 | 126 | TITLE egl36 current for C. elegans neuron model
COMMENT
Channel type: voltage-gated potassium channel.
Model, parameters and patch clamp data from:
Johnstone, D. B. , et al. "Behavioral Defects in C. elegans egl-36 Mutants Result from Potassium Channels Shifted in Voltage-Dependence of Activation." Neuron 19.1(1997)... |
4660e0fd6332b78c72572fcf0ff1ec01871c32b3315914092cf15b8d89a74a2d | NEURON | 2,286 | 130 | TITLE egl19 current for C. elegans neuron model
COMMENT
voltage-gated calcium channel
model and parameters from:
Nicoletti, M., et al. (2019). "Biophysical modeling of C. elegans neurons: Single ion currents and whole-cell dynamics of AWCon and RMD." PLoS One 14(7): e0218738.
ENDCOMMENT
UNITS {
(nS) = (nanosie... |
741e2fca5df52adb6019bb02c80553e7a780a4c38ecc0dc0b0ac10a684bd3c3b | NEURON | 2,333 | 117 | COMMENT
Based on NMODL code for neuron_to_neuron_exc_syn
Code and comments have been normalized--that is,
they are now of the usual form employed in
NMODL-specified synaptic mechanisms.
Oddities that save neither storage nor time,
or preclude use with adaptive integration,
or deliberately introduce errors in an at... |
8d8b2a3775c031c41a6d4355ad130e7ef5372fdd6600393f3254ca212793abb9 | NEURON | 2,361 | 59 | // Code Taken from Aberra et al, JNE 2018
/*
* Procedures for creating GUI panels for choosing parameters and launching cell model
* AUTHOR: Aman Aberra, Duke University
* CONTACT: aman.aberra@duke.edu
*/
proc createPanels(){
celsius = 37 // default temp
setParamsAdultRat() // Set Adult Rat as default
//... |
4913471964c7a2fe2dc325a8e29e2f396bce8b00263f2f7b4e98116cd16f7d6b | NEURON | 2,428 | 95 | COMMENT
**************************************************
File generated by: neuroConstruct v1.5.1
**************************************************
This file holds the implementation in NEURON of the Cell Mechanism:
Leak_pyr (Type: Channel mechanism, Model: ChannelML based process)
with paramet... |
30a85327b679e6c9958ac18b10f1ffb0c6463c23bc2d78f384c389198aae9cf7 | NEURON | 2,526 | 154 | TITLE Channel: K_DR
COMMENT
K delayed rectifier channel for hippocampal CA1 pyramidal neurons
ENDCOMMENT
UNITS {
(mA) = (milliamp)
(mV) = (millivolt)
(S) = (siemens)
(um) = (micrometer)
(molar) = (1/liter)
(mM) = (millimolar)
(l) = (liter)
}
NEURON {
SUFFIX K_DRS4_p... |
d4d6eea95f0c65cb362e57ae190b9e7b1d9b71d6f0efa459fe3dd1662973d494 | NEURON | 2,533 | 135 | TITLE shl1 current for C. elegans neuron model
COMMENT
channel type: voltage-gated potassium channel
model and parameters from:
Nicoletti, M., et al. (2019). "Biophysical modeling of C. elegans neurons: Single ion currents and whole-cell dynamics of AWCon and RMD." PLoS One 14(7): e0218738.
ENDCOMMENT
UNITS {
... |
417269d08111adcc0fe87ab8e91e52d69102eff5b4390848246516e979a15807 | NEURON | 2,536 | 147 | TITLE kqt3 current for C. elegans neuron model
COMMENT
voltage-gated potassium channel
ENDCOMMENT
UNITS {
(nS) = (nanosiemens)
(mV) = (millivolt)
(pA) = (picoamp)
(um) = (micron)
}
NEURON {
SUFFIX kqt3_lr
USEION k READ ek WRITE ik
RANGE ek_tmp, ik_tmp
RANGE dv, ik_di, i_di
RANG... |
de5d2d08a63f1184c04bffedaf6b0a9b6aa050ea3c2cdbf3e9a7a3f20fb12a06 | NEURON | 2,541 | 123 | begintemplate VA12
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon,... |
9819e823f0d65368d7e1d9a52b2f5dfa8513bbe1dafd83e7f4501d81fa232508 | NEURON | 2,555 | 123 | begintemplate VA12
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon,... |
f43c1eb7bd6da0843326b3cb2203dbe64ff832d13915e8065c9f4d74404052bf | NEURON | 2,576 | 126 | TITLE slo1 current for C. elegans neuron model (suppose to interact with unc2)
COMMENT
channel type: calcium-related potassium channel
slo1-unc2 1:1 stoichiometry
model and parameters from:
Nicoletti, M., et al. (2019). "Biophysical modeling of C. elegans neurons: Single ion currents and whole-cell dynamics of AWCo... |
49041c62eee9c83a2260a283f9e6ea45ba35025dcbf2b1feaeb8685e2f4c700d | NEURON | 2,582 | 126 | TITLE slo2 current for C. elegans neuron model (suppose to interact with unc2)
COMMENT
channel type: calcium-related potassium channel
slo2-unc2 1:1 stoichiometry
model and parameters from:
Nicoletti, M., et al. (2019). "Biophysical modeling of C. elegans neurons: Single ion currents and whole-cell dynamics of AWCo... |
3ac2daf6e7dec57dfef1e706b7865fb235d6a346dd9a01471e7edc88c713a6cf | NEURON | 2,633 | 126 | TITLE slo1 current for C. elegans neuron model (suppose to interact with unc2)
COMMENT
channel type: calcium-related potassium channel
slo1-unc2 1:1 stoichiometry
model and parameters from:
Nicoletti, M., et al. (2019). "Biophysical modeling of C. elegans neurons: Single ion currents and whole-cell dynamics of AWCo... |
739d59cf949dae5892ac8e2dd2f7f5b501331f66d29b4221c0e4d7e40557b769 | NEURON | 2,639 | 126 | TITLE slo2 current for C. elegans neuron model (suppose to interact with unc2)
COMMENT
channel type: calcium-related potassium channel
slo2-unc2 1:1 stoichiometry
model and parameters from:
Nicoletti, M., et al. (2019). "Biophysical modeling of C. elegans neurons: Single ion currents and whole-cell dynamics of AWCo... |
4f37be7c91cd086850aa4004645b1ab427141a41c1f4ed3470bf8789ecc00df3 | NEURON | 2,736 | 124 | COMMENT
**************************************************
File generated by: neuroConstruct v1.5.1
**************************************************
This file holds the implementation in NEURON of the Cell Mechanism:
Ca_conc_soma (Type: Ion concentration, Model: ChannelML based process)
with par... |
82c9b8289157698a91dba3284ab955b3b072c57638a6dcfe44613687273e82b2 | NEURON | 2,742 | 124 | COMMENT
**************************************************
File generated by: neuroConstruct v1.5.1
**************************************************
This file holds the implementation in NEURON of the Cell Mechanism:
Ca_conc_dend2 (Type: Ion concentration, Model: ChannelML based process)
with pa... |
13a50c7b067ed919d76701d40b946d90fa2728c7a17be78f59894072b186d5a3 | NEURON | 2,748 | 124 | COMMENT
**************************************************
File generated by: neuroConstruct v1.5.1
**************************************************
This file holds the implementation in NEURON of the Cell Mechanism:
Ca_conc_dend5 (Type: Ion concentration, Model: ChannelML based process)
with pa... |
714a965ffb587413d8ad2fe9761ba83c23be2c473f8059387c62cda54449b7ef | NEURON | 2,748 | 124 | COMMENT
**************************************************
File generated by: neuroConstruct v1.5.1
**************************************************
This file holds the implementation in NEURON of the Cell Mechanism:
Ca_conc_dend3 (Type: Ion concentration, Model: ChannelML based process)
with pa... |
ddd0dc2c40d89a8bfbd3795f4c3c174b77c7645c7340b9ef2ce993cf0a49995f | NEURON | 2,748 | 124 | COMMENT
**************************************************
File generated by: neuroConstruct v1.5.1
**************************************************
This file holds the implementation in NEURON of the Cell Mechanism:
Ca_conc_dend4 (Type: Ion concentration, Model: ChannelML based process)
with pa... |
5fa1314354424826640e717b5ee7193f386a629b698ff2dad4801bb73c0f1385 | NEURON | 2,754 | 124 | COMMENT
**************************************************
File generated by: neuroConstruct v1.5.1
**************************************************
This file holds the implementation in NEURON of the Cell Mechanism:
Ca_conc_dend2a (Type: Ion concentration, Model: ChannelML based process)
with p... |
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