sha256 stringlengths 64 64 | language stringclasses 28
values | size int32 1 491k | lines int32 1 23.2k | content stringlengths 1 200k |
|---|---|---|---|---|
df6e393d8054bca00a98fd606757388780ae7e54afe77082a5084b8ccc879ccf | NEURON | 2,856 | 136 | TITLE slo1 current for C. elegans neuron model (suppose to interact with egl19)
COMMENT
channel type: calcium-related potassium channel
slo1-egl19 1:1 stoichiometry
model and parameters from:
Nicoletti, M., et al. (2019). "Biophysical modeling of C. elegans neurons: Single ion currents and whole-cell dynamics of AW... |
7463b12cc2e0d0f138c3564c3903c6accdd678e358d1af46ae2825a7dfa32d0d | NEURON | 2,860 | 136 | TITLE slo2 current for C. elegans neuron model (suppose to interact with egl19)
COMMENT
channel type: calcium-related potassium channel
slo2-egl19 1:1 stoichiometry
model and parameters from:
Nicoletti, M., et al. (2019). "Biophysical modeling of C. elegans neurons: Single ion currents and whole-cell dynamics of AW... |
aac73194458a2c683040224dc99438c12f2ccd5c318457bffad942c786265baf | NEURON | 2,883 | 64 | module inftychain
go 1.18
require (
github.com/consensys/gnark v0.7.1
github.com/consensys/gnark-crypto v0.7.0
github.com/ethereum/go-ethereum v1.10.26
github.com/gorilla/websocket v1.5.0
github.com/hyperledger/fabric-sdk-go v1.0.0
github.com/stretchr/testify v1.8.1
)
require (
github.com/Knetic/govaluate v3.... |
18cef29483be8c5ceb8c56eb4076a1654a6182342dda9477040d88a81473d2ce | NEURON | 2,913 | 136 | TITLE slo1 current for C. elegans neuron model (suppose to interact with egl19)
COMMENT
channel type: calcium-related potassium channel
slo1-egl19 1:1 stoichiometry
model and parameters from:
Nicoletti, M., et al. (2019). "Biophysical modeling of C. elegans neurons: Single ion currents and whole-cell dynamics of AW... |
7b769850e1b275a2ac66dc2a6572a587a7a5fa64d645657b528b66c1e10dfca4 | NEURON | 2,917 | 136 | TITLE slo2 current for C. elegans neuron model (suppose to interact with egl19)
COMMENT
channel type: calcium-related potassium channel
slo2-egl19 1:1 stoichiometry
model and parameters from:
Nicoletti, M., et al. (2019). "Biophysical modeling of C. elegans neurons: Single ion currents and whole-cell dynamics of AW... |
0311ec48164efbb4579d58c0c7bbf4540445d0175e320da1f012d7cbfc27e803 | NEURON | 2,942 | 129 | begintemplate AIAL
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon,... |
a460030abe35cd4edc1dfbeb01d5f9ad8eb86dcf3508ed107f2062e9afa92d4b | NEURON | 2,950 | 129 | begintemplate AIAR
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon,... |
44e2b802d6c69d7ebc00427cd721ccef841bb1172d17fc7ab3696d88e6be21fe | NEURON | 2,976 | 129 | begintemplate AIYL
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon,... |
0cb48f61a23c5923fac14259b5c013fb202ce5b9955918187b922c0f4dd51624 | NEURON | 2,979 | 129 | begintemplate RIGR
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon,... |
f5a2c6eb6b4fa21cf8ddb2c5b47c9b9c390e162493a4231247088ea1996732f1 | NEURON | 2,980 | 129 | begintemplate AIYR
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon,... |
1c6c8bedeac901691c9faf055abd0a439702c9c73f20a8a120d846bd70a37ca1 | NEURON | 2,992 | 129 | begintemplate AIAR
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon,... |
92ecd60e31de9791402d4bdab516093db7fc3db6436e33acb03ef12c8f2ae995 | NEURON | 2,996 | 129 | begintemplate AIAL
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon,... |
ca1573a675d4a43b74d75ced461ca091247296eb6d002440b2d131b6696ef2cc | NEURON | 2,997 | 129 | begintemplate LUAL
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon,... |
cb301827d6134bfe823ee62aa4bee32289b3375d6e69eea083b667ce0140f855 | NEURON | 3,017 | 129 | begintemplate LUAR
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon,... |
a77fc60bed5e2b2388fd1a220d7a37d1b22f99467680663711fa8eee7037bacc | NEURON | 3,021 | 129 | begintemplate RIGL
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon,... |
e6728da9621251bdc70106a18e43c443d2f83e835eb0b3b3134a107bf86a3a8b | NEURON | 3,025 | 137 | // Active parameters from patdemo.zip
// Similar to Mainen&Sejnowski 1996
// --------------------------------------------------------------
// Spines
// --------------------------------------------------------------
// Based on the "Folding factor" described in
// Jack et al (1989), Major et al (1994)
//... |
70ec9c93cf28c523db829452a7a4a8f1455814c8836453164cd341c32ac960bc | NEURON | 3,027 | 137 | // Active parameters from patdemo.zip
// Similar to Mainen&Sejnowski 1996
// --------------------------------------------------------------
// Spines
// --------------------------------------------------------------
// Based on the "Folding factor" described in
// Jack et al (1989), Major et al (1994)
//... |
0bb872d5a75f2541c859146099f7ab34a0767c66fdac42fe7a10fb1da7d7d4b6 | NEURON | 3,033 | 129 | begintemplate AIYR
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon,... |
6a3319954e0e1f5ef658ab8677c2d80c498e78dd75b981f3235be531066068a8 | NEURON | 3,036 | 130 | begintemplate RMDDL
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon... |
e87ebff94f5ac343305e052b01c174ef0082ff1a8215fee49d4dd9f3fe63fbc3 | NEURON | 3,037 | 129 | begintemplate AIYL
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon,... |
b799b379ecea7049a6a2310a7792ed5decce7cedb50089f277e4a7fbec7674b4 | NEURON | 3,048 | 130 | begintemplate RMDDR
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon... |
c8b4e471bc369466c23b231a6f6f3d27df46024ed11e605f12814533f57cc3df | NEURON | 3,076 | 130 | begintemplate RIFL
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon,... |
f5e159eeae06cfadb2ff95ad9f7040814cd8055241e0cf7000ad1ed98a65340f | NEURON | 3,081 | 130 | begintemplate RMDDL
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon... |
1b2144826c4a4e632876e13c7ec47c5ef6015f5023f2735b2c37cef200a03798 | NEURON | 3,090 | 130 | begintemplate RMDDR
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon... |
d586ad0740f5af22f4679b459075062bfc7036f6b4ca3cebd57c1b53d2fe5174 | NEURON | 3,095 | 130 | begintemplate RIFR
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon,... |
0bfae3b2e0dd3c15ee041c069746b7da7ead66609fca0244430311b4acd8afa6 | NEURON | 3,111 | 131 | begintemplate PVWL
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon,... |
e19241e69dfa54d88eb8151e403eb0c1c32bd6aada1defbe51a9dfde316115ac | NEURON | 3,124 | 130 | begintemplate AIML
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon,... |
8268c55aa7c42ab87aba4fbc4a7e5dfc71c6ced4445bb6699ea97af3040aab73 | NEURON | 3,127 | 130 | begintemplate AIMR
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon,... |
6e975e763e2167efce86ec1d3e02cd9faeb3ef472b2195a4d0d1f48358f9322c | NEURON | 3,135 | 134 | TITLE slo1 current for C. elegans neuron model (suppose to interact with unc2)
COMMENT
channel type: calcium-related potassium channel
slo1-unc2 1:1 stoichiometry
model and parameters from:
Nicoletti, M., et al. (2019). "Biophysical modeling of C. elegans neurons: Single ion currents and whole-cell dynamics of AWCo... |
f49115e34b981b2906ea270b2e9e7e587d47e3e03959f6c489c00d36c5ad12d0 | NEURON | 3,144 | 134 | TITLE slo2 current for C. elegans neuron model (suppose to interact with unc2)
COMMENT
channel type: calcium-related potassium channel
slo2-unc2 1:1 stoichiometry
model and parameters from:
Nicoletti, M., et al. (2019). "Biophysical modeling of C. elegans neurons: Single ion currents and whole-cell dynamics of AWCo... |
5fde8a7e831431b73c34d36cb1435154e0552917a57607b615f80adb818a05f4 | NEURON | 3,150 | 131 | begintemplate PVWR
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon,... |
638c9fcc9240f270350b56debd730fa35fbba55ea5e0e19ef4244dfb64d0f881 | NEURON | 3,154 | 131 | begintemplate M2R
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon, ... |
8e4922e0f22157271eb725f941b684dcb9e71c21b801889c89f1e16c8824bd22 | NEURON | 3,171 | 132 | begintemplate RMDL
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon,... |
2bcdac85dd85c9328942cb1f7d6094494022528d17d69bc6fc3d4503a62159fa | NEURON | 3,178 | 131 | begintemplate M2L
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon, ... |
8deb96c830a82a92865e246e3932e7c793649d0eeccbe8d51219e180512c7ce0 | NEURON | 3,179 | 132 | begintemplate RMDR
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon,... |
4277f4adc5ec86d9d3cd0a948b6e1a12b3de4bbefbc23c9bbdc7de43d635f218 | NEURON | 3,181 | 132 | begintemplate RMDVL
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon... |
a35baf900099818ac4afbae8cf4f13524b55d24c656c4e37b872d5f3db895307 | NEURON | 3,189 | 132 | begintemplate RMEL
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon,... |
dbb20972fc676eca74ac16e1b4135ef2a9fc36fcb0d84abef52ffcee14828c57 | NEURON | 3,203 | 132 | begintemplate RMER
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon,... |
ecc19d8fa7502f6f8456b499c99a9f47572a956e697e2079b62969cd6f692e4f | NEURON | 3,207 | 138 | TITLE slo2 current for C. elegans neuron model (suppose to interact with unc2)
COMMENT
channel type: calcium-related potassium channel
slo2-unc2 1:1 stoichiometry
model and parameters from:
Nicoletti, M., et al. (2019). "Biophysical modeling of C. elegans neurons: Single ion currents and whole-cell dynamics of AWCo... |
d9f966a1eaf1d25b50a0fc9606fe0dfa897adf28c1b96b19e92d302bfc7ada8b | NEURON | 3,211 | 132 | begintemplate RMDVR
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon... |
45c91ec316c3ccd6933560ac873862f1388c07e233fbba1ce3dd729b930fdd46 | NEURON | 3,215 | 132 | begintemplate RMDL
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon,... |
b5b04e4a21faa28776e4ec9c20933b303c00f6ac5e22ff8c9dcb248b73a1cfb8 | NEURON | 3,228 | 132 | begintemplate RMDR
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon,... |
fb160650d55af5ff5ff9e6ba46a23ccdc5984e844439ad2f3ba0a2a821358803 | NEURON | 3,243 | 132 | begintemplate RMER
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon,... |
24a063e9843142791bb0ba091d4fc22a2c89f8f6ffbe6c9f512bc9eeeaee01b1 | NEURON | 3,261 | 132 | begintemplate RMEL
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon,... |
8166ac268435551fabaa4c44d02c7c5c5879ec78423749b1d9e7fe00585bb6b5 | NEURON | 3,284 | 132 | begintemplate RMDVL
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon... |
098a417aaabd05f6b6251ba32077ebdb1542077b326e3bb7532411c2b63efe03 | NEURON | 3,291 | 132 | begintemplate RMDVR
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon... |
b40e4e78eaa41ab1cd51079014ea821dea53f45bce2b970d93a8275f2f1823d6 | NEURON | 3,307 | 139 | TITLE slo1 current for C. elegans neuron model (suppose to interact with unc2)
COMMENT
channel type: calcium-related potassium channel
slo1-unc2 1:1 stoichiometry
model and parameters from:
Nicoletti, M., et al. (2019). "Biophysical modeling of C. elegans neurons: Single ion currents and whole-cell dynamics of AWCo... |
73c4d7c1c361bb334c229c5032a25884c32909bbe595b8d761cd3fcaa50a7b60 | NEURON | 3,363 | 134 | begintemplate RMGR
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon,... |
e5b070966daee26795b378731cb084bf2699b51424e5fcc64811e92f3e40bdd9 | NEURON | 3,367 | 105 | //initializing the CA1 PC
load_file("nrngui.hoc")
xopen("parameters.hoc")
xopen("morphology_131117-C2.hoc")
xopen("biophys.hoc")
xopen("spine.hoc")
xopen("procedures.hoc")
//init()
proc init_panel(){
xpanel("test")
xlabel("*****************NOTE********************")
xlabel("If you want to set a ... |
e1b688428890cfe658d065722890f5502af7a8db739c2309d3cc03929fc10f93 | NEURON | 3,377 | 134 | begintemplate RMGL
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon,... |
600eff9e4e3c658870b4e3cb0e05f8941dd9fdd2dcf7dacdf6480d42b88fec16 | NEURON | 3,390 | 141 | begintemplate VA11
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon,... |
c833507c58fe99e113556fa82e1fde4eae8814b7bf0d58198274732c36db6b8a | NEURON | 3,415 | 144 | TITLE slo1 current for C. elegans neuron model (suppose to interact with egl19)
COMMENT
channel type: calcium-related potassium channel
slo1-egl19 1:1 stoichiometry
model and parameters from:
Nicoletti, M., et al. (2019). "Biophysical modeling of C. elegans neurons: Single ion currents and whole-cell dynamics of AW... |
1fa15f2684af62ed9994c17abb2b4e30c97e809cb79cbe5c6ddd2c1d9c0a4926 | NEURON | 3,422 | 144 | TITLE slo2 current for C. elegans neuron model (suppose to interact with egl19)
COMMENT
channel type: calcium-related potassium channel
slo2-egl19 1:1 stoichiometry
model and parameters from:
Nicoletti, M., et al. (2019). "Biophysical modeling of C. elegans neurons: Single ion currents and whole-cell dynamics of AW... |
2246addb3c16d01acb6b991fb8c0f83a0e726582700b015ba870a182345692f2 | NEURON | 3,447 | 141 | begintemplate VA11
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon,... |
e07f002392786a41eb971f0b8f4507472aad3cf847282fe614a33f838ddd2af8 | NEURON | 3,461 | 134 | begintemplate MI
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon, p... |
33f2a5c54d5c532762d9705149e7158825844fc54af5b9d6c4f24e6372738613 | NEURON | 3,464 | 135 | begintemplate ADAL
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon,... |
c5178584579475d6c90d83b8247b2b36d0644541befd8489c3c1b759895ca93e | NEURON | 3,470 | 135 | begintemplate ADAR
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon,... |
77131038989eba69b67e3f51514ba0c9884941622ff43abc7707f1db77b46212 | NEURON | 3,473 | 135 | begintemplate SDQR
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon,... |
c19652ae3a0b5abf0acc1803700c764036feff339fb11d309984c8ee0445cf95 | NEURON | 3,478 | 148 | TITLE slo1 current for C. elegans neuron model (suppose to interact with egl19)
COMMENT
channel type: calcium-related potassium channel
slo1-egl19 1:1 stoichiometry
model and parameters from:
Nicoletti, M., et al. (2019). "Biophysical modeling of C. elegans neurons: Single ion currents and whole-cell dynamics of AW... |
6da7fdd8e0399e00ca443fd6cc8c8e85532b7d4a8b8049ba7f3b5668b52c13f2 | NEURON | 3,485 | 148 | TITLE slo2 current for C. elegans neuron model (suppose to interact with egl19)
COMMENT
channel type: calcium-related potassium channel
slo2-egl19 1:1 stoichiometry
model and parameters from:
Nicoletti, M., et al. (2019). "Biophysical modeling of C. elegans neurons: Single ion currents and whole-cell dynamics of AW... |
d2035f6bceb9a28f70bca5d8ce6e520c3659c7e88844df07f7d19b3419e1a403 | NEURON | 3,522 | 136 | begintemplate BDUL
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon,... |
11dee3f15b927c92e48033c1e3649e87703b16b9819e346c3436064af5d80bb7 | NEURON | 3,525 | 136 | begintemplate BDUR
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon,... |
06a143e5bff6beaebe851f9cee896d226bd06f190612f7dbdba92c608243cf66 | NEURON | 3,535 | 137 | begintemplate AIZL
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon,... |
1d2bc4961b8e4223293d239fab0b01b7a0baf042a46c57d52f3a48f8340fdff7 | NEURON | 3,542 | 143 | begintemplate SABVR
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon... |
64ab10fcaf14fd1250a7a8a9440a50285ae4b264ab1b94d047983bf31bd00f0f | NEURON | 3,550 | 143 | begintemplate SABVL
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon... |
9da1c6977a13429291f28747095e2fe7473b3189538575fa5f9ca65e7020101b | NEURON | 3,551 | 137 | begintemplate AIZR
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon,... |
abb5b295a55d6f8965437ccfe5ffdc82e1cb313610a54ee540b0f6ab301c396e | NEURON | 3,591 | 137 | begintemplate AIZR
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon,... |
46053ef1d4bb5bdcb1249da93423199e9412b553450a897cf5b288bc8ffba275 | NEURON | 3,599 | 137 | begintemplate DVB
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon, ... |
1c0c86a15c35e43c5d36b04df0566ffcc21e3d30169741241805fcc3d57eb7d0 | NEURON | 3,617 | 143 | begintemplate VC06
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon,... |
87667825d07d3be8fac8be807590c09b647a93c6e4ebb1ad8f1d0a3cf8791df2 | NEURON | 3,618 | 137 | begintemplate AIZL
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon,... |
67a588f447f3b5f7e7b66f2967af3abe094b0a5ba46dad1318ff8b8a851a4c4f | NEURON | 3,630 | 144 | begintemplate VA02
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon,... |
310162d87faec6ce3edd0ddf1f57252f9f014e86a2c8e9733889ecadcf017d3e | NEURON | 3,697 | 145 | begintemplate VA10
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon,... |
564b2c00f4cdd6d798c9446e4d6e884e87f0945856a6a52dfa31901814cdce36 | NEURON | 3,711 | 144 | begintemplate VA02
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon,... |
e5956e546d851d3fef8ec53ead3594094574f73f1ff5632d4ae336789d5c6290 | NEURON | 3,744 | 146 | begintemplate VB11
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon,... |
1e21596479a42bbd73c90f323cb0f971fd63f1170e155c4b277eebe211ebbb49 | NEURON | 3,761 | 145 | begintemplate VA10
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon,... |
a01acefc7b1fa6733fe3452ee47289a809c78f082b9269e0893e07eb705fa0f8 | NEURON | 3,818 | 148 | begintemplate VB09
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon,... |
1b6473d1c5c326476202545307ab9a4588fbf2d3c926ddfebd63601579876279 | NEURON | 3,853 | 146 | begintemplate VB11
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon,... |
8dfc39d40e6a1ed1f3f7af7d6c31a3910fb6296e980416338d7f7774d635536d | NEURON | 3,859 | 147 | begintemplate VA05
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon,... |
bb9e09c2f88a434cd29023a059c728858ef28206a129386046285ca80c2f68bb | NEURON | 3,874 | 147 | begintemplate VA03
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon,... |
9b309e4702bb5885149e0c630d4209f26fefd1c0206a907fd0e1372292cedbab | NEURON | 3,886 | 141 | begintemplate RIAL
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon,... |
4fbcb4418cddf21f444318b3f77a733f4ffdd5e6b3e26e8f9b9f1b167b7de0a5 | NEURON | 3,887 | 141 | begintemplate RIAR
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon,... |
d5e2871830d620aaf348769abe0189eb243af413b45d5f5eb27a10e1a8587155 | NEURON | 3,889 | 148 | begintemplate VA04
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon,... |
d05e374fdf771686c976e7b949ee9b468ec8babedb45029db07434d0220cc9e2 | NEURON | 3,891 | 174 | TITLE slo2 current for C. elegans neuron model (suppose to interact with unc2)
COMMENT
channel type: calcium-related potassium channel
slo2-unc2 1:1 stoichiometry
model and parameters from:
Nicoletti, M., et al. (2019). "Biophysical modeling of C. elegans neurons: Single ion currents and whole-cell dynamics of AWCo... |
404416f6a8beced0f855c399b3dd7551aafdfe83c410890ab42dd6284e9cc3f1 | NEURON | 3,918 | 148 | begintemplate VB09
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon,... |
4ef8afd8125e44a41337e697d4ccf1f9732a9de8a012d1fc9e6690395e5a160a | NEURON | 3,926 | 142 | begintemplate PDA
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon, ... |
c4040d0207709d33ec2738a4f28fd7af47c8e5bbe3a71802838d5e9adf9dd648 | NEURON | 3,933 | 149 | begintemplate VB10
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon,... |
509fe2fa86b8d5aa68c1472731a1521513f52354d97823e4b7e1460bc36697d8 | NEURON | 3,936 | 149 | begintemplate PHAL
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon,... |
5297d017c3b94563b03c06456912e5644b70ad96e12cef5c1574ed6fe1753285 | NEURON | 3,960 | 147 | begintemplate VA05
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon,... |
c34b8e0f0f2683234fe87775d50bd234cfb5ca149d384420f2055e3e7bfcd9c6 | NEURON | 3,971 | 149 | begintemplate PHAR
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon,... |
3af37293c3df73832b4d8dcdcc36490dc52d149ae3e01b18def1a4cd60ce8705 | NEURON | 3,981 | 148 | begintemplate VA04
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon,... |
83b587eca8dec879933252fdf25c26d1ce5dd931934ad60a9c352507eaf81b79 | NEURON | 3,984 | 149 | begintemplate PHBL
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon,... |
093a5316571bd92b8e3e66601f04912c04b1e98257542c309475fdac90a85157 | NEURON | 3,988 | 175 | TITLE slo1 current for C. elegans neuron model (suppose to interact with unc2)
COMMENT
channel type: calcium-related potassium channel
slo1-unc2 1:1 stoichiometry
model and parameters from:
Nicoletti, M., et al. (2019). "Biophysical modeling of C. elegans neurons: Single ion currents and whole-cell dynamics of AWCo... |
4ddf5a76949e0ba8f7a5fdcf3f31d44e8eb3f2e0b642a7eeb55bdb1ba7d0c247 | NEURON | 3,993 | 147 | begintemplate VA03
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon,... |
944e801504620b57e9669a38b3d11a89ec2f52d1312ea8e4c6f2d19e077fd861 | NEURON | 4,047 | 149 | begintemplate VB10
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon,... |
781e5a0fda0f2dc7ea589fafadb9b7fc92bbdb672346f93594b66c43ce2c6a59 | NEURON | 4,057 | 149 | begintemplate PHBR
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon,... |
6a6e318429185e5da325655f2d627e33d7ed58dccc7d99c5a226a603b34e7130 | NEURON | 4,096 | 150 | begintemplate IL2VL
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon... |
eafe9e439058747e2cf1bebde66b52c6b17c8efbb9ded860ddd51f63ad851e39 | NEURON | 4,097 | 150 | begintemplate OLQVL
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon... |
70fd9bce7c865cb1ca9841cf72e8b62cb73afa9be0bdde0f3eba7d38ae932922 | NEURON | 4,098 | 150 | begintemplate URYVL
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon... |
fab9ca989947a90e67e21ba20cdf61395abf5b13b203275e8363ccd63731826b | NEURON | 4,102 | 150 | begintemplate URAVL
public init, topol, basic_shape, subsets, geom, memb
public x, y, z, position
// Some methods for referencing the cells
public toString, netInfo, set_initial_v, set_initial_ion_properties, synlist
// Section: Soma, id: Soma, parent: $s.parent
create Soma
public Soma
// Section: Axon, id: Axon... |
709413fa87a871f2ce772bfbc8282709a895d54633ba9823153538a645c14413 | NEURON | 4,104 | 119 | // Code Taken from Aberra et al, JNE 2018
/*
* Assigns biophysical parameters to myelinated axon
* should have created SectionLists: Myelin_secList, Node_secList, UnMyelin_secList, iseg_secList, and axonal
* AUTHOR: Aman Aberra, Duke University
* CONTACT: aman.aberra@duke.edu
*/
proc myelin_biophys() { localobj axon_b... |
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