sha256 stringlengths 64 64 | language stringclasses 28
values | size int32 1 491k | lines int32 1 23.2k | content stringlengths 1 200k |
|---|---|---|---|---|
f631ed8a56684a77b4d6e7bc4ace47766372bae7192fb98ab412de18a937bb6c | MATLAB | 1,860 | 59 | % fromTrkGetpDataName.m
%
% Function that takes in .trk file name and returns the pData file name for
% the same experiment
% Assumes standard naming convention for experiments, either 2P imaging or
% ephys: date_fly_fov/cell_trial
%
% INPUTS:
% trkFilename - name of .trk file
% pDataFilepath - path to pData fold... |
507ef08cb499ddc0fc6d3f5dd669eb3d41c9b1c5d13662d09eb7c74306c00781 | MATLAB | 1,861 | 64 | % appendDateLegVidFiles.m
%
% Function that goes through all the video files in a date folder and
% appends the date in front of the video file names
%
% INPUTS:
% none, but prompts user to select date folder through gui
%
% OUTPUTS:
% none, but renames the video files
%
% CREATED: 3/24/22 - HHY
%
% UPDATED:
% ... |
5a69e128dfa3d30add9e49b19d4e18de6208d373bf9cbbca15da3c2558a82a4e | MATLAB | 1,861 | 76 | %tableS5_HR_diffs_highFR_synthetic.m
%%
clear all;
close all;
clc;
warning('on','all')
scriptdirs = {pwd; '..\..\plot'; '..\..\analyze'; '..\..\helper_functions'};
addpath(scriptdirs{:})
datadir = pwd;
ssfile = 'subsample1000_highFR_stdRP.mat';
sspath = fullfile(datadir,ssfile);
%%
tabledir = datadir;
tablefil... |
4f7149a85942c74658899f833afd3d5f80ecbc29292c90c3cab3f0d59a992818 | MATLAB | 1,862 | 57 | function [csInfo, z] = t2t_csNOcs(csInfo, z, window)
z.csWindow_good = window;
z.csWindow_bad = [0 window(1)];
z.csWindow_bad2 = window;
%% Find Good Cycles/Trials
for i = 1:length(csInfo)
currentCycle = csInfo(i).cycleNum;
if ~csInfo(i).usable
continue
end
% CONDITION 1: Good Spike... |
7141a216394be1a57a9c6b8401b3fc4c106f5b7f337e1f17db1b6e243d190d61 | MATLAB | 1,864 | 59 | function y = gammaPDF(t,tau,n)
% Gamma function - used for impulse response calculations and HIRF
%
% y = gammaPDF(t,tau,n)
%
% The gamma is essentially the convolution of n exponentials with time
% constant of tau. The peak of the function is near tau * n
%
% See formula various places, but Boynton et al. is a good ... |
7aae63db091b5f70d4a1538658fcaf3779cc56029f491761876eadbb2e6b9612 | MATLAB | 1,864 | 52 | function clean_data = get_clean_data(stg,prf,roi)
% gets data extracted for a desired ROI and whitens and detrends the
% data.
%
% CLEAN_DATA = GET_CLEAN_DATA(STG,PRF,ROI)gets data extracted
% for a desired ROI, returns whitened and detrended data
% CLEAN_DATA (NImages-by-1 cell), and saves the cleaned data in t... |
391ed22188455b2519ce32f5dc3fdfb9ca6e8fc49e3b9a519fbc5e132f208035 | MATLAB | 1,866 | 47 | classdef MotionCorrection < types.core.NWBDataInterface & types.untyped.GroupClass
% MOTIONCORRECTION An image stack where all frames are shifted (registered) to a common coordinate system, to account for movement and drift between frames. Note: each frame at each point in time is assumed to be 2-D (has only x & y dime... |
c841a8256de3dd4c6c81454863c087ba419bfa08c38a8dd8977d7807b0e44af1 | MATLAB | 1,866 | 51 | %{
Copyright (C) Cambridge Electronic Design Limited 2014
Author: James Thompson
Web: www.ced.co.uk email: james@ced.co.uk, softhelp@ced.co.uk
This file is part of CEDS64ML, a MATLAB interface to the SON64 library.
CEDS64ML is free software: you can redistribute it and/or modify
it under the t... |
54efdbc120f4ae5ca9dd9c10b2c5d5dec07c5b7cddb972a7d751fed8b9bde664 | MATLAB | 1,867 | 65 | classdef ScratchData < types.core.NWBData & types.untyped.DatasetClass
% SCRATCHDATA Any one-off datasets
% OPTIONAL PROPERTIES
properties
notes; % (char) Any notes the user has about the dataset being stored
end
methods
function obj = ScratchData(varargin)
% SCRATCHDATA Constructor for ScratchData
... |
f3ae6e9a10c2c75b5d7f16e794d191d88af7ac500ffe1b9f29837070f66c19be | MATLAB | 1,868 | 58 | function [probe] = characterizeProbe(probe)
%CHARACTERIZEPROBE Derives characterization metrics of a probe
% This function takes in design parameters and assembly processes to
% produce quantitative metrics that characterize the probe. The number of
% characterizations depends on the number of inputted parameters... |
d4a1b59f72a9c16745bc7cc72d1b3e743f120f72c9aeb5c5445a9acdd703c595 | MATLAB | 1,869 | 63 | function allFliesCorr = getMeanCorrContParamEphys_fly(datDir, xRange, isCirc)
% prompt user to select getCorrelationEphysContParam() files
[corrEphysFNames, corrEphysPath] = uigetfile('*.mat', ...
'Select output file', datDir, 'MultiSelect', 'on');
% if only 1 file selected, not cell array... |
4d152e7d138752efd2bda90ff0f8543ead0097e2cf268b4768e0d1fa1691ff2e | MATLAB | 1,870 | 60 | function main()
if ~isdeployed
disp('adding paths');
addpath(genpath('/N/u/brlife/git/jsonlab'))
addpath(genpath('/N/u/brlife/git/mba'))
addpath(genpath('/N/u/hayashis/git/vistasoft'))
addpath(genpath('/N/u/brlife/git/wma_tools'))
end
config = loadjson('config.json');
centroidSD=config.centroidSD... |
b816a3bf6ae87431fb6d68951029203a5cde971b49b13b118080564383692474 | MATLAB | 1,870 | 59 | % sortLegStepsByIInj_allGUI.m
%
% Function that categorizes all leg steps by whether they're during a
% current injection bout (and by injection amplitude) or not.
% Calls sortLegStepsByIInj() but operates on multiple pData files, selected
% through GUI
%
% INPUTS:
% amps - vector of all current injection amplitude... |
1875566f19de4fa7e1037d9eff9b17156edf39affc30cb64c4b78fcdf8c92f4f | MATLAB | 1,871 | 51 | function [xMax_px, yMax_px] = ml_sim_nlx_nvt_save(timestamps_ms, x_cm, y_cm, arena_width_cm, arena_height_cm, video_width_px, video_height_px, outputFilename)
% FieldSelectionFlags(1): Timestamps
% FieldSelectionFlags(2): Extracted X
% ... |
259f2a63f018ed9f20eaae3d445fdaf83b0f652faf87599f39af1101ae28dc6b | MATLAB | 1,872 | 48 | % This script creates the mesh (both CAD surface mesh and a computational
% wire grid) for a ring with 1 A of total current
% The output is saved in the binary file coil.mat and includes:
% strcoil.Pwire(:, 3) - set of nodes for all wires
% strcoil.Ewire(:, 2) - set of edges or current dipoles for all wi... |
adb6488a3c6e4e4cb80b080ee21706d0dd47f94202ac5034c698c617f00e789c | MATLAB | 1,872 | 48 | % This script creates the mesh (both CAD surface mesh and a computational
% wire grid) for a ring with 1 A of total current
% The output is saved in the binary file coil.mat and includes:
% strcoil.Pwire(:, 3) - set of nodes for all wires
% strcoil.Ewire(:, 2) - set of edges or current dipoles for all wi... |
ccf70d205bbd91cee6aa44b7e57ff1c75cd3c8e4f9838ebe35d3a4e90a3a453d | MATLAB | 1,872 | 69 | % mglGetHostName.m
%
% usage: mglGetHostName()
% by: justin gardner
% date: 07/18/09
% purpose: Gets the name of the computer that we are running on
%
function hostname = mglGetHostName()
retval = '';
% check arguments
if ~any(nargin == [0])
help mglGetHostName
return
end
% check global to s... |
6b2f075ee8e2fb2fd4c7db83262fe406c2ba4141ed41fcab18b3e32b936006ac | MATLAB | 1,873 | 54 | %% Average time in the center per 90 minutes
function TimePercent_CenterZone_90min = time_in_the_center_90min_OF(structure)
% Load:
Time_StartAnalyse=structure.Time_StartAnalyse ;
Frame_Start=structure.Frame_Start;
Frames_Vec=structure.Frames_Vec;
xi=structure.xi;
yi=structure.yi;
result=structure.result;
Ti... |
af4fc7d3eb039a0889cc92f2ac5437b9801546c237b452d4fba3ce7657a320b3 | MATLAB | 1,874 | 54 | %{
Copyright (C) Cambridge Electronic Design Limited 2014
Author: Greg P. Smith
Web: www.ced.co.uk email: greg@ced.co.uk
This file is part of CEDS64ML, an SON MATLAB interface.
CEDS64ML is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License... |
383ae0e3a434b08acca6e2ef4b3da9172daad59a7e4ddd442e9f16403af01b07 | MATLAB | 1,875 | 65 | function vl_noprefix
% VL_NOPREFIX Create a prefix-less version of VLFeat commands
% VL_NOPREFIX() creats prefix-less stubs for VLFeat functions
% (e.g. SIFT for VL_SIFT). This function is seldom used as the stubs
% are included in the VLFeat binary distribution anyways. Moreover,
% on UNIX platforms, the stub... |
8419254c99adac273754f0b8c1e655822cd332333d91558b3f3179aca76770a3 | MATLAB | 1,875 | 29 | % Marc Normandin, Muzzio Lab, Psychological & Brain Sciences, University of Iowa, 2024
% Simple way to make the scripts run for individuals since the data will
% not be stored in the git repository and we need other repos.
% All configuration variables are part of this structure.
CHENGS_TASK_2C_FIGURES_CONFIG = [];
... |
d730eb299c96d77f55c29a85cf44087b4cf86169d70c26fa766f42121286efe0 | MATLAB | 1,875 | 66 | function [ status, text ] = open_batch_files( obj )
% Select files to open.
%
% Syntax:
% OPEN_BATCH( obj );
%
% Input parameters:
% * obj - object containg data
%
% Output parameters:
% status
% text
%
% Example:
% OPEN_BATCH( );
%
% Available at: https://github.com/NCN-Lab/DBScope
% For referencing, plea... |
d23fd42162f613de210a91d070d8343ba7986d01661d178bed2420a9f26357e3 | MATLAB | 1,877 | 80 | function [proj,Acc,AccS] = GML_ProbRewards(N,M,sigma,N_TrialsL,N_TrialsT,noiseL,noiseT)
M = 7; % #symbols
N = 100; % dimension
S = randn(N,M);
alp = ('A':'Z')';
voc = alp(1:M);
SAVE_FIGURES = false;
%normalize vectors
for k=1:M
S(:,k) = S(:,k)/norm(S(:,k));
end
% Orthogonalizing
[ST,~] = mgson(S);
% Adding Nois... |
a43abb64e91c11a9f6b2bd6abb8c407d33a44ab8ad3988f394a8bda2461a66ba | MATLAB | 1,879 | 52 | % getFlyMetadata.m
%
% Function that prompts user to enter metadata about the experimental fly
% and returns it in a single struct. Also, saves identifying info about
% fly (date and fly number).
% Metadata:
% genotype - as string, fly genotype
% manipulation - as string, anything done to fly (e.g. starvation,
% ... |
ba4ca7c55c14dd8308f8c10adac5d9ac43d80f41ad6319ea6770bf28df270f67 | MATLAB | 1,879 | 42 | function c = ForwProbV1Cons(x,ynn_v,tv,no,at_C_in_v,at_H_in_v,at_O_in_v,fv_in_v,V,CAf_in_v,CBf_in_v,CDf_in_v,mol_W_in_v)
ynn_v_r = x(1:tv*no);
ynn_v_r = reshape(ynn_v_r,size(ynn_v));
ynn1_v_p = ynn_v_r';
ncA = 5; ncB = 5; ncC = 5; ncD = 10;
nhA = 6; nhB = 8; nhC = 10; nhD = 12; nhW = 2;
noA = 0; noB = 1; no... |
d7945aca62fe4b8c9d88260602831b5f239f8c09a6bba501dc9b8cc1e44221df | MATLAB | 1,879 | 52 | function [eyevelH_offset, eyevelH_rel_phase, eyevelH_amp, eyevelH_rel_gain] = VOR_SineFit_Single(freq, sampleRate, eyeVel, headVel, drumVel)
%% define vector of time
ndatapoints = length(headVel); % number of datapoints in segment
time = ((1:ndatapoints)-1)/sampleRate;
%% Set up variables for fitting data using a l... |
de56ef625c1999c376d414d793eb079a76384a220d39271a06b26c6ca293c84c | MATLAB | 1,879 | 48 | % PRV is the combination of both firing rate "r" and menbrane potential "v"
clear;
close all;
initime = clock;
addpath('funcs');
% get the change of PRV in parameter space
Delta_e_start = 0.125; % cannot equal to 0
Delta_e_end = 0.4; % can equal to 0.5
Delta_i_start = 0.0125; % cannot equal to 0
Delta_i_end = 0.029; %... |
0622a276ef0db9e8bf8e5edcfbf137c7c83d82dd416f66cea74c3403205a24eb | MATLAB | 1,880 | 54 | function [pos,pdf] = pseudoRandSample3D(sz, nsamps, width, weight, pdf)
% [pos,pdf] = pseudoRandSample3D(sz, nsamps, width, weight, pdf)
%
% Function to sample pseudo randomly within a 3D array, with partial
% exclusion of previously sampled locations. The inputs are:
%
% - sz - Size of input matrix
% - nsa... |
9b6abde9e02ca0b062cd90b059be81c3b62ca5786bd7a31ad253b5d47c7984ba | MATLAB | 1,880 | 49 | function [s2p_median ,s2p_centroids,Fall] = s2p_masks(mouse,date,servernum)
% This code is adapted to only return the centroids
%
% FINDINTENSITIES_ALL_S2P_MASK uses suite2p mask outputs. Returns intensities for each red selected cell
% across pockels and wavelenths; also returns the locations of the red; red
% cell i... |
c31aeea101765de16d4270d8a896726d8bf99f1b104543112ac1adcb0a5544e1 | MATLAB | 1,880 | 55 | function [thinning_iteration, dilation_size] = find_worm_radius(Image, best_threshold)
% get the worm radius by looking at how many iterations it takes for
% thinning to converge
BW = im2bw(Image, best_threshold);
BW = bwmorph(BW, 'fill');
% last_thinned_image = false(size(Image));
% thinni... |
8ba6d4898e7a835ae14d815b6671d8829847c698d323da6c01403dcb809294ca | MATLAB | 1,881 | 79 | %tableS3_HR_diffs_pbase_vary_synthetic.m
%%
clear all;
close all;
clc;
warning('on','all')
scriptdirs = {pwd; '..\..\plot'; '..\..\analyze'; '..\..\helper_functions'};
addpath(scriptdirs{:})
datadir = pwd;
ssfile = 'subsample1000_pbase_vary.mat';
sspath = fullfile(datadir,ssfile);
%% paths
tabledir = datadir;
tab... |
fdaf1066f1304a7b4db8e7f1d190242de4385e8162f0ff0de867d70661d804f1 | MATLAB | 1,882 | 48 | % Author: Zachary Chiang, Buenrostro Lab, Harvard University
% Uses a previous color correction transformation matrix to speed up
% current color correction between IGS cycles(see also: color_correct_initial.m)
function[corr_channel pre_corr max_corr] = color_correct_heuristic(stackA, stackB, channel, tform)
% cr... |
0775d151d76099fb223a095b0a948d1c75084a6147a76e9e315a142a13143577 | MATLAB | 1,883 | 49 | function dataRuns = alignAndConcatenateMultipleExperiments(tSeriesRun1_in,tSeriesRun2_in, coords1,coords2)
% Function to reorder voxels of fMRI time series coming from separate data
% collection sessions for the same experiment. The slice prescriptions will
% vary across session. Thus in order to average or combine dat... |
017873cd3456300af15ff27b688555a654956c8f958e0c6978022794d221e4ce | MATLAB | 1,884 | 40 | function Binc = bemf3_inc_field_magnetic(strcoil, Points, I0, mu0)
% Computes magnetic field from the coil via the FMM
% in terms of the pseudo electric potential
%
% Copyright SNM 2017-2020
% Compute dipole positions, directions, and moments
M = size(strcoil.Ewire, 1);
N = size(Points, 1);
... |
373caf0e34334d0b1e476973ae550e587af6f1ff040f0198447515c2b7704ca8 | MATLAB | 1,884 | 64 | clear;
clc;
close all;
initime = clock;
addpath('..\funcs');
% get the change of PET in parameter space
Delta_e_start = 0.22; % larger than
Delta_e_end = 0.42; % equal or smaller than
Delta_i_start = 0.034; % larger than
Delta_i_end = 0.034; % equal or smaller than
Delta_steps = 100;
Iattn = 0.02;
time = 4000;
strt_... |
593e2d31dbb9d189afe984c658f4479ad5cc7fc727830d25393faa9c959a2bc7 | MATLAB | 1,884 | 50 | function [] = plotSpatialMultiplexingGroups(probe, groups)
%PLOTSPATIALMULTIPLEXINGGROUPS Spatially plot spatial multiplexing groups
% Plots circles of radius sdrange(2) over sources of a particular group.
% groups can be either a single integer specifying the group number, or a
% vector of group numbers. When mu... |
4b81e3079c24b6a8940d615919315941b2bd369548aa7b56de60e77258527d92 | MATLAB | 1,885 | 66 | function helper_bfo_save_data(outputFolder, perCell, rotDeg, group)
numAngles = 360/rotDeg;
numCells = length(perCell);
avg_prob = zeros(1, numAngles);
avg_corr = 0;
num_prob = 0;
num_corr = 0;
prob = [];
corr = [];
for iCell = 1:numCells
% Only include the non-nan data... |
ee6663ba19164ca70ffb49c5855a8f0a6024bea75e4ceacd4eb07d951a5bf4c0 | MATLAB | 1,885 | 80 | function results = vl_test_imdisttf(varargin)
% VL_TEST_DISTTF
vl_test_init ;
function test_basic()
for conv = {@single, @double}
conv = conv{1} ;
I = conv([0 0 0 ; 0 -2 0 ; 0 0 0]) ;
D = vl_imdisttf(I);
assert(isequal(D, conv(- [0 1 0 ; 1 2 1 ; 0 1 0]))) ;
I(2,2) = -3 ;
[D,map] = vl_imdisttf(I) ;
asse... |
3e96f6b0b235b3da7b1d41c6cf6274e0c124697350a6d1e22827d8b3ca014848 | MATLAB | 1,886 | 53 | function status = fillIndefiniteParameters( obj, data )
% Extract LFPs from Indefinite Streaming mode
%
% Syntax:
% FILLSURVEYPARAMETERS( obj, data );
%
% Input parameters:
% * obj - object containg data
% * data - data from json file(s)
%
% Output parameters:
% * status
%
% Example:
% status = FILLI... |
62622b7e95922c30a31a15776da6ed6700861ff1a3a8ba21cc8c5870500e106f | MATLAB | 1,886 | 66 | %% Generate a table of optimal parameters and F1 for 1 photon
clear
% dir_video = 'E:\1photon-small\added_refined_masks';
% dir_output_info='data_TUnCaT';
% num_Exp = 9;
% dir_output_info='data_TENASPIS_original';
% dir_output_info='data_TENASPIS';
% num_Exp = 8;
% dir_output_info='data_simulation';
dir_output_info='da... |
6bde972344fb70dd22a8238185a0b3ba02dd95f0ff47ca80fbad1c1b1b46fa0a | MATLAB | 1,886 | 62 | function [varargout] = funname(varargin)
% WRITE_CTF_SHM writes metainformation and data as a packet to shared memory.
% This function can be used for real-time processing of data while it is
% being acquired.
%
% Use as
% write_ctf_shm(msgType, msgId, sampleNumber, numSamples, numChannels, data);
%
% See also READ_... |
24ebb743391b58541adcb1885680afec5b9eecfb3e7937c90a2254aafaf5d374 | MATLAB | 1,887 | 69 | function [sfAll, sbAll]=TDLM_EEG_core( cfg,Prob_state)
% TDLM_EEG_core performs TDLM analysis for EEG data.
% This function calculates sequenceness for given state probability
% using provided forward and backward transition matrices.
maxLag = length(cfg.lgncy);
%% load state probability [1,2,3,4]
X = Prob_state;
ns... |
3bf545d549d60ea91e202d8fc49c53eee638069ca9249eb20d6ffaf21d5d5420 | MATLAB | 1,887 | 57 | % determineStepStartEndInd.m
%
% Function that takes in zero crossing indicies (from findVelZeroXing())
% and returns the indicies of the start and end of each corresponding half
% step
%
% INPUTS:
% zeroXing - struct from findVelZeroXing()
% legInd - indicies of leg tracked pts
%
% OUTPUTS:
% stepInd - struct ... |
4994e4af6ebc077c4e59bbe16d4d4dcc07da53fddf0d6a35439d3fea469757ab | MATLAB | 1,887 | 54 | % getStepFwdLogical.m
%
% Function that takes in legSteps struct, a specific leg, and sample times
% and returns a logical for whether the leg was moving as in forward
% walking (swing brings the the leg more anterior) or backwards walking
% (swing brings the leg more posterior). True for forward.
%
% INPUTS:
% le... |
57098a9fbc9e01335a62394a4ad092f5896be0df62dc8dc1c3f35feca0fa4e1a | MATLAB | 1,887 | 63 | function [yData,signalData,signalIdx,signalAmps] = ...
file_embeddingSubSampling(projectionFile,parameters)
%file_embeddingSubSampling finds the potential training set contributions
%from a single file (called by runEmbeddingSubSampling.m)
%
% Input variables:
%
% projectionFile -> file to be a... |
7ab8a061c7478abc432eb1c959e690871ff85cb137dc7687b41db1d65447531d | MATLAB | 1,887 | 56 | %{
Copyright (C) Cambridge Electronic Design Limited 2014
Author: Tim Bergel
Web: www.ced.co.uk email: tim@ced.co.uk, softhelp@ced.co.uk
This file is part of CEDS64ML, a MATLAB interface to the SON64 library.
CEDS64ML is free software: you can redistribute it and/or modify
it under the terms o... |
aa808a3388d69813e133f8cb04dbf529de4689aed689b69b7260270a70177cf6 | MATLAB | 1,887 | 56 | function dat = ft_preproc_medianfilter(dat, order)
% FT_PREPROC_MEDIANFILTER applies a median filter, which smooths the data with
% a boxcar-like kernel except that it keeps steps in the data. This
% function requires the MATLAB Signal Processing toolbox.
%
% Use as
% [dat] = ft_preproc_medianfilter(dat, order)
% wh... |
c749c60720bf7ea1bbbc679ca5600592c2ba40c7e2b5d89c30f8da961a1a5be8 | MATLAB | 1,887 | 41 | % Plot various measures of variation in the data
subplotfigure = figure();
% 1) Variance between each cycle %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
varFig = subplot(4, 1, 1);
plot(nanvar(segMat_405_Control, 0, 1), 'b'); hold on
plot(nanvar(segMat_472_GCaMP, 0, 1), 'color', lightGreen);
plot(nanvar(segMat_Diff, 0, 1)... |
56342ceaf2bee636ae7d3c6b29bfce0f41ff0ee84f573a0fd32895f088a95e36 | MATLAB | 1,888 | 68 | % runVisStim.m
%
% Function to run visual stimulus for specified duration (or until key
% press). User selects pattern and mode (closed loop X, Y, both; open
% loop).
% Does not acquire any data. Meant to play between calls of runEphysExpt()
% to acclimate fly to closed loop on a ball
%
% INPUTS:
% none, but promp... |
830703322ae42cb693a7188d804fe865d9baaa7d57882063361d0ad1ac01128f | MATLAB | 1,888 | 49 | % permutationTest
%save('amapVarDist1.mat','amapVarDist1','SesList','amapVarCenters');
BootStrap = 1000;
load('amapVarDist1.mat');
[SS,LL] = size(amapVarDist1);
figure(1);
for iSes = 1:SS,
xx = amapVarCenters;
if length(find(xx<0))>0 && length(find(xx>0)>0),
xx1 = find(xx<0);
xx2 =... |
5bdf90a11c0f5378465258b3f156833caac11b70d53425da1002805ee1569712 | MATLAB | 1,889 | 55 | clear;
tbl_dir = pwd;
tbl_name = fullfile(tbl_dir,'S1_Data.csv');
T = readtable(tbl_name);
groupStr = unique(T.groupStr);
setStr = {'Load 1','Load 2','Load 4'};
%%
myColors = jet(2);% https://www.mathworks.com/matlabcentral/fileexchange/68546-crameri-perceptually-uniform-scientific-colormaps
mksize = 5;
figure('Name',... |
7ee0c2c8514e88bfd0cc33ee2703f7aa86472827ae9268196b9485bf0cde9aab | MATLAB | 1,890 | 54 | function LFP_Info= PLX2LFPInfo(PLX_filename)
%% Get LFP_Info from PLX file
%% Input full path of PLX file
%% Output:
%% LFP_Info.LFP = All_LFP;
%% LFP_Info.ch_name = All_LFP_Names;
%% LFP_Info.fs = All_LFP_freq;
%% Copyright WB 2023/02/07
[n, freqs] = plx_adchan_freqs(PLX_filename);
[n,na... |
92a5b9799738acdfbae1f10c0db5438844aae7d5184b7d11f43e5ee23928e0d9 | MATLAB | 1,891 | 49 | function params = setSeachParams(x,params)
% Function to set starting parameters for fine search fit optimization
% Note that we assume the same time constant for sustained and transient
% IRF channels of CST pRF model.
%
% INPUTS
% x : (vector) starting pRF parameter
% 1. x0 (deg0
% ... |
56d011ac78cdd0976086ab5560e3f8d6b2b995169cfafbb7d5d500f5e70ea0b9 | MATLAB | 1,892 | 49 | function filename = fetch_url(filename)
% FETCH_URL checks the filename and downloads the file to a local copy in
% case it is specified as an Universal Resource Locator. It returns the
% name of the temporary file on the local filesystem.
%
% Use as
% filename = fetch_url(filename)
%
% In case the filename does not... |
e811692e90987acb4a4def91b417ec60e6e45228c3c0bb13af9c52bcfa44cc70 | MATLAB | 1,892 | 61 | % getNTArrays.m
%
% Function to generate digraph arrays for neurons' neurotransmitter
% (info for both nodes and edges)
%
% INPUTS:
% ntFolder - full path to folder of neurotransmitter txt files
% s - array of source nodes for digraph
% names - array of node names for digraph
%
% OUTPUTS:
% ntEdges - neurotra... |
2573b1dd06e4bb979288521ed4d730ccfcac34410d77868cb9a505d3257f802a | MATLAB | 1,893 | 70 | function hist = vl_aibcuthist(map, x, varargin)
% VL_AIBCUTHIST Compute a histogram by using an AIB compressed alphabet
% HIST = VL_AIBCUTHIST(MAP, X) computes the histogram of the data X
% using the compressed alphabet specified by a cut MAP of the AIB
% tree (as returned by VL_AIBCUT()). Each element of HIST count... |
3524b76a7132c96fc3330990ad86571ff3a69a6a063a1001dc27f90b80b15974 | MATLAB | 1,893 | 57 | function [innermost, inside] = find_innermost_boundary(bnd)
% FIND_INNERMOST_BOUNDARY locates innermost compartment of a BEM model
% by looking at the containment of the triangular meshes describing
% the surface boundaries
%
% [innermost] = find_innermost_boundary(bnd)
%
% with the boundaries described by a struct a... |
b3f37f89be86ee3d2fbbef4b1360f4493edba313b100f416f1b34f605f52a170 | MATLAB | 1,893 | 44 | function [ns_RESULT, nsSegmentSourceInfo] = ns_GetSegmentSourceInfo(hFile, EntityID, SourceID);
%ns_GetSegmentSourceInfo Retrieves information about the sources that
% generated the segment data
%
% Usage:
% [ns_RESULT, nsSegmentSourceInfo] =
% ns_GetSegmentSourceInfo(hFile, EntityID, Source... |
e8998aca8bc09691358890abd98330967c0da176e458eaf3221c8854ca32b4a5 | MATLAB | 1,894 | 65 | function t1_inversion_recovery(DATA,ROI,AddInfo)
% This Aedes plugin calculates T1 inversion recovery maps
% This function is a part of Aedes - A graphical tool for analyzing
% medical images
%
% Copyright (C) 2006 Juha-Pekka Niskanen <Juha-Pekka.Niskanen@uku.fi>
%
% Department of Physics, Department of Neurobiology... |
bfd2dd7cc6276024febe5d719238da6641e04875be2efbcba0e2c9637ab2d690 | MATLAB | 1,895 | 88 | function [done,msg] = aedes_cellwrite(incell,filename,varargin)
% AEDES_CELLWRITE - Write cell array to a text file
%
%
% Synopsis:
% [done,msg] = aedes_cellwrite(incell,filename,varargin)
%
% Description:
%
% Examples:
%
% See also:
% AEDES
% This function is a part of Aedes - A graphical tool for a... |
64f2a0a77aa21a7b8e5609435a522c3bc7002b4e20cace08f8e52533a8b58a6a | MATLAB | 1,896 | 63 | function [n, npw, ts, wave] = plx_waves(filename, channel, unit)
% plx_waves(filename, channel, unit): read waveform data from a .plx or .pl2 file
%
% [n, npw, ts, wave] = plx_waves(filename, channel, unit)
%
% INPUT:
% filename - if empty string, will use File Open dialog
% channel - 1-based channel number ... |
daf30310da8c5e3de793705e6cf6315175b2dae65d00227ea15c53ed3a4537af | MATLAB | 1,897 | 73 | % mglFillRect - draw filled rectangle(s) on the screen
%
% $Id$
% usage: results = mglFillRect(x, y, size, color, antialiasing)
% by: Benjamin Heasly
% date: 03-17--2022
% copyright: (c) 2006 Justin Gardner, Jonas Larsson (GPL see mgl/COPYING)
% inputs: x,y - vectors of x and y coordinate... |
195b8de4a0ddd1055c0be7ee6d2e6638488d692e549f2330267faf08872ddbfc | MATLAB | 1,899 | 62 | % load marked spikes from data
%
% conf: name of configuration ('eeg-fmri-geneva' or 'eeg-fmri-marseille')
% group: name of group ('lTLE' or 'rTLE')
% isVerbose: boolean print Spikes per minute (true/false)
%
% 2022-08-22 Jonathan Wirsich
function spkPerMin = getSpikesPerMinute(conf, group, isVerbose)
[confs, conf... |
49891e50227c4b32b086995bddf3ebdcf06fe71817e7352968f1b824a75d2979 | MATLAB | 1,900 | 79 | function OUT = permutation_corr_brbeh(x,b,nperm,type)
% permute the behavioral scores
if size(b,2)>1
b = b';
end
N = size(x,1);
if nargin < 3
nperm = 10000;
end
if nargin < 4
type = 'pearson';
end
% generate permutations
P = zeros(nperm+1,N,'int8');
for p = 1:(nperm+1)
if p == 1
... |
5f75f78c1c8bcd2fc340070561429aad31b419363681323c5e932c1317b1dc04 | MATLAB | 1,900 | 51 | function unfold_motion_censoring_mask(path_to_list,path_to_functional)
%% Use this function to unfold masks to calculate connectotyping via // code
%% path to functional
% path_to_functional='C:\Users\oscar\OneDrive\matlab_code\GUI_environments\README\output_GUI_env\standard\Functional';
% path_to_list ='C:\... |
49b109ce27212869315a38432c3c98c4ec2a1ed4b89a0c82196b8afd98d75a8c | MATLAB | 1,901 | 63 | function c = SolveDynMCNNCons(x,Imat_t,dsr_t,tn,ni,nh,no,at_C_in_t,F_out_t,V_ins_t,delta,data_dyn)
whd = reshape(x(1:ni*nh),[ni,nh]);
wod = reshape(x(ni*nh+1:ni*nh+nh*no),[nh,no]);
wfd = reshape(x(ni*nh+nh*no+1:ni*nh+nh*no+no*nh),[no,nh]);
bhd = (x(ni*nh+nh*no+no*nh+1:ni*nh+nh*no+no*nh+nh))';
bod = (x(ni*nh+nh*n... |
770650432a210800e41b5e279e653584e89fc9d7c4ee57a1713d1ee1c8275d0f | MATLAB | 1,901 | 52 | %% detects surface, starting from a provided start location
function [surff]= surfaceDetectionAnterion_v02(complexSignal,startAnt,startLat)
col='rygbck';
sign2=log(flipud(medfilt2(abs(complexSignal),[7 7])));
[Gmag,Gdir] = imgradient(sign2);
Gmag(isinf(Gmag)==1)=0;Gmag(isnan(Gmag)==1)=0;
Gmag=Gmag(1:end-22,:);
Gdir=G... |
75d13c7efe0ce08133c6ba28b683d391e20f23fbb2a35b7f84bb2216ecb75c9c | MATLAB | 1,902 | 49 | %{
Copyright (C) Cambridge Electronic Design Limited 2014
Author: James Thompson
Web: www.ced.co.uk email: james@ced.co.uk, softhelp@ced.co.uk
This file is part of CEDS64ML, a MATLAB interface to the SON64 library.
CEDS64ML is free software: you can redistribute it and/or modify
it under the t... |
4dc2105cf0cd584d3d211a5f30f7f441aaf24826214d08cf2d370a92a3eed31f | MATLAB | 1,903 | 49 | function results = vl_test_homkermap(varargin)
% VL_TEST_HOMKERMAP
vl_test_init ;
function check_ker(ker, n, window, period)
args = {n, ker, 'window', window} ;
if nargin > 3
args = {args{:}, 'period', period} ;
end
x = [-1 -.5 0 .5 1] ;
y = linspace(0,2,100) ;
for conv = {@single, @double}
x = feval(conv{1}, x) ;... |
4f7bbdfa09ea17675c7c08f3b85b2b6bd97fc9a3f1922e1872c3e12404d0e512 | MATLAB | 1,903 | 48 | % mglSocketDataWaiting: Check if data is available to read on a socket.
%
% $Id$
% usage: isDataWaiting = mglSocketDataWaiting(s)
% by: justin gardner and ben heasly
% date: 12/26/2019
% copyright: (c) 2021 Justin Gardner (GPL see mgl/COPYING)
% purpose: Checks if bytes are available to re... |
5edd234dcb3a9ad3b4a61aa7fdc5fadcf8a38e1c73713bab610f043f727c02e2 | MATLAB | 1,903 | 63 | function vl_demo_print(varargin)
% VL_DEMO_PRINT
% VL_DEMO_PRINT(NAME) prints the current figure to the documentation
% directory with the specified filename, assuming that the global
% variable VL_DEMO_PRINT is defined and non-empty when MATLAB is
% started (our using SETENV() from MATLAB). Otherwise the funct... |
79be222262e82bb5ee70679b1acaf772295a2bf4052d52159bc52d75182daf31 | MATLAB | 1,904 | 68 | function bool = checkfields(s,varargin)
%
% bool = checkfields(s,varargin)
%
%Author: Wandell
%Purpose:
% We often need to check for a nest sequence of fields within a structure.
% We have been doing this with a series of nested or grouped isfield statements.
% This got annoying, so I wrote this routine as a repl... |
814d52d9c6721f53434968757efe8e91586ea8039e4584a588a90da8f6a9e4bf | MATLAB | 1,904 | 65 | function [probe] = getAdjMatrix(probe, add_module)
%GETADJMATRIX Calculate the module/node pairs of directional graph
% Detailed explanation goes here
add_module = 0;
if (isfield(probe, 'denseflag'))
if (probe.denseflag)
add_module = 1;
end
end
s=0;
t=0;
if ((isfield(probe.module, 'shape')==false... |
9e364cc3273bf641018e3ccbf4988bcfceef58b8bc48205251f2359bfcea5eda | MATLAB | 1,904 | 51 | function [ lfp_montage ] = extractLFPMontage( obj, data )
% Extracts LFPs Montage data.
%
% Syntax:
% [ lfp_montage ] = EXTRACTLFPMONTAGE( obj, data );
%
% Input parameters:
% * obj - object containg survey data
% * data - structure containing montage
%
% Output parameters:
% * lfp_montage - new structure c... |
d6d9d0a7ea70220f334eb18d06967b2d0df76690f22947fc8c27ee9b704dff8c | MATLAB | 1,904 | 59 | % Function File: [yf, tf, n, HTF, Fs] = lpf (y, t, HTF)
%
% Low-pass filter y-values at the given half-transmission frequency
% (HTF, in Hz) using a binomial filter.
%
% The filter order (n) for a given HTF is calculated from the following
% equation:
%
% n = 1 / log2 ((cos (pi * (2 * HT... |
ee14f4e9fc3ca1e4baa8a7ed50a6b2fde072819e43dcbf722fa336ae5b959a4b | MATLAB | 1,905 | 77 | %tableS2_FA_diffs_primary_synthetic.m
%%
clear all;
close all;
clc;
warning('on','all')
scriptdirs = {pwd; '..\..\plot'; '..\..\analyze'; '..\..\helper_functions'};
addpath(scriptdirs{:})
datadir = pwd;
ssfile = 'subsample1000_stdFR_stdRP.mat';
sspath = fullfile(datadir,ssfile);
%%
tabledir = datadir;
tablefil... |
13ae45a181926058467e98743705750831cf99605a3107f90da0e31b38af47a4 | MATLAB | 1,906 | 79 | function corrmap = fmri_corr(data,seed)
corrmap = [];
if ischar(data)
data=aedes_data_read(data);
data = data.FTDATA;
elseif isstruct(data)
data=data.FTDATA;
end
% Get mean time-series from seed ROIs
seed_struct = l_Roi2seed(data,seed);
% Calculate Pearson correlation coefficients -------------
data_sz = one... |
84170549a971e36d02a172b6a92736e3ffee888c453fd59bacd78a754ebad186 | MATLAB | 1,906 | 77 | %tableS6_FA_diffs_highFR_synthetic.m
%%
clear all;
close all;
clc;
warning('on','all')
scriptdirs = {pwd; '..\..\plot'; '..\..\analyze'; '..\..\helper_functions'};
addpath(scriptdirs{:})
datadir = pwd;
ssfile = 'subsample1000_highFR_stdRP.mat';
sspath = fullfile(datadir,ssfile);
%%
tabledir = datadir;
tablefil... |
1d21988f2e02f8d49583b179469225008a6f90e5bef5e97123645225c41aef5b | MATLAB | 1,907 | 50 | % Check the validity of the t-files because of the issue with 32 vs 64 bit'
close all
clear all
clc
pipe = MLTetrodePipeline_v2('pipeline_config.json')
for iSession = 1:pipe.experiment.numSessions
session = pipe.experiment.session{iSession};
fprintf('Processing session ( %s )\n', session.name);
% Loa... |
d9845b699fe163e21c1dfd97ad1f7f93b60d4ae379b77779e657d7a988d7764a | MATLAB | 1,907 | 56 | clear;
close all;
clc;
initime = clock;
addpath('funcs');
Delta_E = 0.3; Delta_I = 0.03; Iattn = 0.02;
allTime = 5000;
steps = 101;
lateral_start = 0.09; lateral_end = 0.18;
strt_prd = 300000; end_prd = allTime/0.01;
% container
PETAsheet = zeros(steps,16,16,5);
PETOsheet = zeros(steps,16,16,5);
finalRsheet = zeros... |
97461a7d3789da42f1b1fde95c525869f22b5938e1b4b6a68d732ff79df03c70 | MATLAB | 1,908 | 45 | function [subjectName, isTestMode, distanceFromScreen] = runInput()
% Initialize output variables
subjectName = '';
isTestMode = false;
distanceFromScreen = 0;
% Create a figure for the input dialog
fig = figure('Position', [100, 100, 350, 180], 'MenuBar', 'none', 'Name', 'Experiment Setup', 'N... |
f20d3b9c9b2a6c5d824a44ec1672326fca1bea4f47315b70ae82455050b17683 | MATLAB | 1,908 | 64 | function ft_flush_event(filename, varargin)
% FT_FLUSH_EVENT removes all events from the event queue
%
% Use as
% ft_flush_event(filename, ...)
%
% See also FT_FLUSH_HEADER, FT_FLUSH_DATA
% Copyright (C) 2007-2010 Robert Oostenveld
%
% This file is part of FieldTrip, see http://www.ru.nl/neuroimaging/fieldtrip
% fo... |
fa2a4c96d47cedaa5cd5bcf61bece86980edecf737b87d82be5df2348c82e9e6 | MATLAB | 1,908 | 52 | classdef IntracellularElectrodesTable < types.hdmf_common.DynamicTable & types.untyped.GroupClass
% INTRACELLULARELECTRODESTABLE Table for storing intracellular electrode related metadata.
% REQUIRED PROPERTIES
properties
electrode; % REQUIRED (VectorData) Column for storing the reference to the intracellular ele... |
a8954d57be8f6f56f5eb3c95e0a2f7e4663a4079b8c3cd5b52c5737824c8ef0b | MATLAB | 1,909 | 54 | function Nsmap1 = nmap(y,y2);
% updates global Nsmap - Ns of al bins of y-y2 combinations
% y2 is for y-axis, y for x-axis
globals;
DEBUG = GDEBUG;
Nframesy = length(y);
Nsmap1=zeros(yNbins,xNbins);
% count the number of x-y (y-y2) appearances in the data
% SEE IF CAN REPLACE BY 2D HIST
for ii=1:Nframesy,
... |
bc9584db9525bd5f79d67f5e13925134ab1892093bff2247f163db29c6c551ba | MATLAB | 1,910 | 81 | function [pc,p,cc] = pcorr(X)
% PCORR - Calculate partial correlation coefficients
%
%
% Synopsis:
%
%
% Description:
%
% Examples:
%
%
% See also:
%
% This function is a part of Aedes - A graphical tool for analyzing
% medical images
%
% Copyright (C) 2011 Juha-Pekka Niskanen <Ju... |
be858f756cd789cb22efc7213399c7ac1367b6e0f1e7bdba7e4e23d44b1ae5b0 | MATLAB | 1,910 | 60 | clear all;
close all;
% Make a function for below input would be mat files, maybe filename? and output is the h5
% file
% load binarized. mat
load('Binarized_event_detection_final.mat');
% load plex.mat
% [A,b]=uigetfile('*plex.mat','multiselect','off');
% load(A);
matFiles = dir('*.mat') ;
matFiles_name = {matFil... |
deb819b381966a2fe09783a195cf7796e0a4ca941a61cd55ab276af7cde9acd6 | MATLAB | 1,910 | 46 | function[header]=SONGetBlockHeaders(fid,chan)
% SONGETBLOCKHEADERS returns a matrix containing the SON data block headers
% in file 'fid' for channel 'chan'.
% The returned header in memory contains, for each disk block,
% a column with rows 1-5 representing:
% Offset to start of block in file
% ... |
a7609ec1f503441e7a0518fae1ece344d71eced04ad568e1c467a32a50d0e509 | MATLAB | 1,911 | 70 | function [MATreordered,MATindices,MATcost] = reorderMAT(MAT,H,cost);
%REORDERMAT Reorder matrix for visualization
%
% [MATreordered,MATindices,MATcost] = reorderMAT(MAT,H,cost);
%
% This function reorders the connectivity matrix in order to place more
% edges closer to the diagonal – this often helps in d... |
b64fb18e2b7af0cfa41a06d7d37be89913b66ae7d11b2f801b1eea6160ea23d7 | MATLAB | 1,912 | 42 | clear;
%%%%%%%%%%%%%%%%%%%%%%%%% SETTING PARAMETERS %%%%%%%%%%%%%%%%%%%%%%%%%%
number_CASE_DEL=12721;
number_CASE_DUP=4441;
number_CONTROL_DEL=11924;
number_CONTROL_DUP=5015;
number_case=number_CASE_DUP; %specify this parameter with deletion of duplication values
number_control=number_CONTROL_DUP; %specify this ... |
8b3f3110a8764f844a1f7c013ebcfea795bb8f1c51e71123b4a48c6a07db8c05 | MATLAB | 1,913 | 66 | function R=randmio_und(R, ITER)
%RANDMIO_UND Random graph with preserved degree distribution
%
% R = randmio_und(A,ITER);
%
% This function randomizes an undirected network, while preserving the
% degree distribution. The function does not preserve the strength
% distribution in weighted networks.
%
% I... |
e897d6165494d46cf7b398cb321d954ddacce286ae46337b0e388bb6e44e6631 | MATLAB | 1,913 | 67 | function hdr = mayo2nifti1(ohdr,mat)
% Convert from an ANALYZE to a NIFTI-1 header
% _______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
%
% $Id: mayo2nifti1.m 8776 2013-11-14 09:04:48Z roboos $
if isfield(ohdr,'magic'),
hdr = ohdr;
... |
21558b877c271955fd296623adc5041749a5898a5c0fc5ad87e905335b8ca834 | MATLAB | 1,914 | 83 | clear all
close all
M = readmatrix('cd_data.xlsx');
[B,I] = sort(M);
I = I';
trial_num = B(:,1)';
cue_DA = M(I(1,:),2)';
rew_DA = M(I(1,:),3)';
total_DA=cue_DA+rew_DA;
avg_cue_DA = movmean(cue_DA,10);
avg_rew_DA = movmean(rew_DA,10);
avg_rewcue_DA = movmean(total_DA,10);
figure;
subplot(1,3,1)
sca... |
519fefc42a79bd1adf3523a60d47a820fcd6826095fb7bde844a88a014e8e905 | MATLAB | 1,914 | 33 | function [mean_of_binary_data,errhigh,errlow] = bootstrap_mean_and_ci(nboot,alpha,binary_data)
%%%% this function will enable us to find the mean and error bars (95% CI using bootstrap)
ci_cutoff = round([nboot*alpha/2 nboot*(1-alpha/2)]');
bootstrap_data = bootstrp(nboot,@mean,binary_data);
s... |
88fb429372762fd5c37924b4e279da53c905332b3a0e295451d01e05ca07657e | MATLAB | 1,914 | 75 | % GLM
root = '/';
savedir = 'savedir/';
group = {'MUSICIANS/', 'NONMUSICIANS/'};
no_of_runs = 10000;
% Load RMS data
load('rms2.mat');
X = zscore(rms);
% Loop over group directories
for k = 1:numel(group)
cd([root group{k}]);
dirls = dir('*mus*');
for s = 1:length(dirls)
disp(['subject ', num2str(... |
5cd6cb5a68e64e76bd5052fa51e63d80cc477b7119b0e45ab06cdf83dd8d7133 | MATLAB | 1,915 | 55 | %% Generate a table of optimal parameters and F1 for 1 photon
clear
% dir_output_info='data_TUnCaT';
% num_Exp = 9;
% dir_output_info='data_TENASPIS_original';
% dir_output_info='data_TENASPIS';
% num_Exp = 8;
dir_output_info='data_simulation';
num_Exp = 10;
% dir_output_info='data_CNMFE\blood_vessel_10Hz';
% num_Exp =... |
ba5f8d777536a0921cf0e450f2cd1d79a2ea8e71377d2e1cafe7e7f1755a983b | MATLAB | 1,915 | 48 | % This script creates the mesh (both CAD surface mesh and a computational
% wire grid) for a straight conductor with 1 A of total current
% The output is saved in the binary file coil.mat and includes:
% strcoil.Pwire(:, 3) - set of nodes for all wires
% strcoil.Ewire(:, 2) - set of edges or current dipo... |
c1f0ddc8655e927943aea0c801a077068774cbd767dbd90b143fefe60ac293e0 | MATLAB | 1,916 | 52 | function raw_motion = extract_MoCo(dicomdir)
%% This script parses the movement information from MoCo series
% NOTICE: The raw motion output will be in the native ordering format
% (y,x,z,y_rot,x_rot,z_rot)
%dicomdir = '/group_shares/FAIR_ADHD/CYA/sorted/ADHD-HumanYouth-OHSU/11778-1/20150211-SIEMENS_TrioTim-Nagel_K_S... |
cf95d4fb4993564ade93c86d0d376d079a19d10cf4ec1d4123226ff362fb3789 | MATLAB | 1,916 | 75 | function [CIJ] = makeevenCIJ(N,K,sz_cl)
%MAKEEVENCIJ Synthetic modular small-world network
%
% CIJ = makeevenCIJ(N,K,sz_cl);
%
% This function generates a random, directed network with a specified
% number of fully connected modules linked together by evenly distributed
% remaining random connections.
... |
e378eface169300e57e4c09b194621195397fc597173696fa18d1b974e8c994a | MATLAB | 1,916 | 55 | % clear;
addpath(genpath('.'))
addpath(genpath(fullfile('..','ANE')))
%%
dir_video=fullfile('..','data','data_TENASPIS','added_refined_masks');
list_Exp_ID={'Mouse_1K', 'Mouse_2K', 'Mouse_3K', 'Mouse_4K', ...
'Mouse_1M', 'Mouse_2M', 'Mouse_3M', 'Mouse_4M'};
num_Exp = length(list_Exp_ID);
eid = 1;
Exp_ID = ... |
e4a8afcfd258fc808c98007b698b7632dde1cdb1311eab79164ad5176b5e0f58 | MATLAB | 1,916 | 69 | function R=latmio_dir(R,ITER)
%LATMIO_DIR Lattice with preserved in/out degree distribution
%
% L = latmio_dir(A,ITER);
%
% This function "latticizes" a directed network, while preserving the in-
% and out-degree distributions. In weighted networks, the function
% preserves the out-strength but not the in-s... |
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