sha256 stringlengths 64 64 | language stringclasses 28
values | size int32 1 491k | lines int32 1 23.2k | content stringlengths 1 200k |
|---|---|---|---|---|
d9a6d2c3a6ebf0622c2422d5861a2f0b14fd57a9b1867836b6c3c08ce49cbcd1 | MATLAB | 4,323 | 117 | % Bonferroni-Holm (1979) correction for multiple comparisons. This is a
% sequentially rejective version of the simple Bonferroni correction for multiple
% comparisons and strongly controls the family-wise error rate at level alpha.
%
% It works as follows:
% 1) All p-values are sorted in order of smallest to largest.... |
b569c734eea6ef1b9dcf016828261f6cce18e0a15c81c74f4b43553dee368bb7 | MATLAB | 4,327 | 108 | %% write_mff_data.m
% Matlab File
% author Colin Davey
% date 3/2/2012, 4/15/2014
% Copyright 2012, 2014 EGI. All rights reserved.
%
% Writes channel data (newData) in newData to an MFF file. NewData is a 2-D
% matrix of size Nchans*Nsamples as described at
% http://fieldtrip.fcdonders.nl/reference/ft_read_data... |
a203808ec0e42c93a18c6a35d01d2976b972f4c65abb93777bed100eda102581 | MATLAB | 4,328 | 109 | function [p, placeMap, activeMap, occupancyMap, notVisitedMap] = ml_nlx_placemaps_compute(visitedPos, activePos, activeVal, boundsi, boundsj, varargin)
p = inputParser;
p.CaseSensitive = false;
checkVisitedPos = @(x) size(x,2) == 2 && size(x,3) == 1 && isnumeric(x);
addRequired(p,'visitedPo... |
8d5386e3911c6efdb1ea007a439e01562e2a1d203d945e308def6b72fa6cac44 | MATLAB | 4,330 | 144 | %{
For the LE(t) for each run and each participant, stack them and conduct k-medians
clustering with a specified k for one random iteration of 500.
Output:
subclust_*.h5 Clustering for this iteration.
subcent_*.h5 h5 Centroids for this iteration.
substat_*.h5 Clustering-based metrics for this iteration.
%}
%Define c... |
e88e487ff8e55cb3d038df51cdfd9cc1c0e16d61bb4bb7bfb6d190b7e861177b | MATLAB | 4,330 | 90 | function Experiments = TimeSegmentCompare()
%TimeSegmentCompare compares the LNP fits from different parts of
%experiments, not used in paper
% Detailed explanation goes here
fps = 14;
EarlyStartFrame = 1;
EarlyEndFrame = 10*60*fps;
LateStartFrame = 20*60*fps+1;
LateEndFrame = 30*60*fps;
fram... |
d677f726740459ff8d12ef847e958aaa727e49e5b20680d47a079ee8ce5e8c63 | MATLAB | 4,331 | 107 | % twoPhotonSettings.m
%
% Function that returns all the CONSTANTS for a two-photon experiment
%
% OUTPUT:
% dataDir - name of base data directory
% exptFnDir - name of folder containing all experiment functions
% settings - struct of settings
%
% Created: 7/25/18
% Updated:
% 7/30/18 - HHY
% 4/29/21 - HHY - ... |
23030346f6ed5c800f496cf74e53bf0fb6a6033ddb771a1dc4e1a796e27849d5 | MATLAB | 4,333 | 170 | function brain_masking(DATA,ROI,AddInfo)
% BRAIN_MASKING - Try to mask the (Rat) brain
% (this is an Aedes plugin)
%
% Synopsis:
%
% Description:
%
% Examples:
%
% See also:
%
% This function is a part of Aedes - A graphical tool for analyzing
% medical images
%
% Copyright (C) 2006 Juha-Pekka Niskanen <Juha-Pekka... |
64b38fe7c2ba362b44e447bff13b7f1c9bdea27ec3f95224066836407a8fce31 | MATLAB | 4,333 | 97 | function subject_power_2014_motion_parse_v2_opt_octave(movement_files,skip_seconds,epi_TR,expected_contiguous_frame_count,output_dir)
% FD parsing Nipype wrapper pulling in list of motion files
% Modified to read DVAR_pre_reg, DVAR_post_reg, and DVAR_post_all and store
% values appropriately in the 51x51x3 cell array o... |
b5c41409f8b3d1e2ddb29ba0adcaf2738ab29ce1ffc047f66df62afc3dbd4c31 | MATLAB | 4,333 | 100 | % Marc Normandin, Muzzio Lab, Psychological & Brain Sciences, University of Iowa, 2024
function [T] = compute_per_group_animal_averaged_rate_difference_matrix(SessionsToGroups, RateMatrices, perCellNormalizationMethod, perAnimalNormalizationMethod)
uniquePairs = unique_groups_sessions_to_groups(SessionsToGroups);
... |
1c72c075d2384506a2ed5272eb9d8f8d89f78cc979463fd69b09a00744c40e7e | MATLAB | 4,335 | 112 | classdef fuzzy_vor_AOI < voronoi_AOI
%UNTITLED2 Summary of this class goes here
% Detailed explanation goes here
methods
function self = fuzzy_vor_AOI(all_pois, trail, allowed_angle, max_vor_distance)
%UNTITLED2 Construct an instance of this class
% Detailed explanat... |
14e119446c3a8d0d44e118f366cbf265817ae409b66a8ec1bfa194f9030cdb87 | MATLAB | 4,336 | 136 | % taskTemplate.m
%
% $Id$
% usage: taskTemplate
% by: justin gardner
% date: 09/07/06
% copyright: (c) 2006 Justin Gardner (GPL see mgl/COPYING)
% purpose: Test function which will turn the cursor on / off (and change the fixation color to
% green when it should be display and red when ... |
949854ae000acf50301635977685e46f1b49672d3f1d2736a76ac6cff893b0a3 | MATLAB | 4,339 | 122 | % data_name = 'lowBG=5e+03,poisson=1';
addpath(genpath('.'))
gcp;
%%
num_Exp = 10;
list_Exp_ID = arrayfun(@(x) ['sim_',num2str(x)],0:(num_Exp-1), 'UniformOutput',false);
rate_hz = 10; % frame rate of each video
avg_radius = 6; % original_masks
r_bg_ratio = 3;
leng = r_bg_ratio*avg_radius;
th_IoU_split = 0.5;
thj_inc... |
d2c506009b510ff924e83c14dfb02ce6d7d3cf74358fd0b50580badd9c128032 | MATLAB | 4,339 | 142 | %% LOAD
load('ds_events.mat')
load('ds_partialcorrsn.mat')
load('id_list.mat')
%% ORGANIZE/ COMBINE
[ds_ct_corr,sep_corrs]=organize_corrs(ds_partialcorrs,id_list);
all_corrs{1,2}=[sep_corrs{1,2},sep_corrs{2,1}];
all_corrs{1,3}=[sep_corrs{1,3},sep_corrs{3,1}];
all_corrs{2,3}=[sep_corrs{2,3},sep_corrs{3,2}];
%% FI... |
d00aa2ae163cf02c19684426be63169a2b56fa85a18ccc2127713b042f3e771b | MATLAB | 4,349 | 165 | %Sample code
%Davor Curic, 2023, Complexity Science Group, University of Calgary
%
%This code loads the avalanche analysis and calculates critical exponents
%tau, alpha, gamma, and the scaling relation
%This code requires pvcalc and plmle from the NCC toolbox
%https://github.com/nctoolbox/nctoolbox
FR = 50;
... |
b2d04cef6640a8a0702902d76a81d6c125145af0a600c8efff0b42a036811a50 | MATLAB | 4,352 | 155 | close all
clear all
clc
sessionsToUse = [2];
project = ml_util_json_read('project_config.json');
expRich = dir(fullfile(project.dataFeatureRichFolder, '**', 'experiment_description.json'));
miceRich = initMice(expRich, project.analysisFeatureRichFolder);
plot_mice_groups(miceRich, sessionsToUse)
expPoor = dir(fullf... |
3c4fda229b21ff7eb7108bdf1b362cc99b776435f17edd751e2bb08af4edb12a | MATLAB | 4,355 | 91 | % Marc Normandin, Muzzio Lab, Psychological & Brain Sciences, University of Iowa, 2024
function [analysisSettings] = analysis_settings_load()
analysisSettings = [];
% This should never be set manually here, as the shuffled pipeline will
% set them.
analysisSettings.USE_SHUFFLED_MAPS_AT_INITIALIZATI... |
3e2e7d664f3ed8b0783c0b28186c3c65d825bac19318a916564f648af23c0bde | MATLAB | 4,356 | 178 | %% Set up
clear;clc; close all
A = chanData;
A.expmtDataFolder = 'G:\My Drive\Expmt Data\Max\Climbing Fiber Project\Jennifer Data\jennifer_arch';
A.bFiles = dir([A.expmtDataFolder '\**\*']);
eFiles = A.bFiles(contains({A.bFiles.name}, {'ephys.mat'}));
A.bFiles([A.bFiles.isdir]) = [];
A.bFiles(~contains({A.bFiles.nam... |
d9e4378ea13ae9439117a33fc8dd842a9e044b68283a4168efeac89ae3fdb3be | MATLAB | 4,356 | 142 | % checkFictracNoise.m
%
% Function to load in FicTrac output files run on same video (testVid.avi
% from 201104), outputdatatest2-4.dat. To check whether offline run of
% FicTrac produces the same or different output (especially wrt noise)
% when run with identical parameters on the same video).
function checkFictr... |
2de08fa5cc1b067d2db9b25da5305a224c82249440683b5784448d4ac355a961 | MATLAB | 4,357 | 96 | function subject_power_2014_motion_parse_opt_BIDS(movement_files,skip_seconds,epi_TR,expected_contiguous_frame_count,output_dir,output_prefix)
% FD parsing Nipype wrapper pulling in list of motion files
% Modified to read DVAR_pre_reg, DVAR_post_reg, and DVAR_post_all and store
% values appropriately in the 51x51x3 cel... |
4716b7ba6a633e9739ca9b80c9d4ffd9b65d6738c2e82442c87e1c8452cbde05 | MATLAB | 4,360 | 118 | % Author: Zachary Chiang, Buenrostro Lab, Harvard University
% Uses cross correlation and intensity-based registration (imregister) to
% register one stack to another in x, y, and z, both stacks should be
% maximum intensity projected in the channel dimension and then the
% registration is applied to all channels sepa... |
26b008ed54a5a01b75b70eef1e8ea96aad8311517b79f9b9dc283d25526ce81a | MATLAB | 4,361 | 118 | function [outEEG, errorflag] = jointdecorrelation(inEEG, thresh, eventtype, scale)
% Joint correlation
% [outEEG, errorflag] = jointdecorrel(inEEG, thresh)
%
% Inputs:
% inEEG: EEG struct of EEGLAB
% thresh: Threshold for BCG correction
% eventtype: EEG.event.type that serve as a reference point i... |
4e9f3484f4235920137bfe451d87dbafa67b8c760f563f9d8954e32670a940e8 | MATLAB | 4,366 | 140 | % run_simulations_highFR_stdRP_1_iter_extra_info.m
% to generate a new set of
% 540 x 1 simulations
% (# param combos x # iter)
% stored out with some extra information
%%
clear all;
close all;
clc;
%% add fn paths if not added yet
% assumes script run within local directory
scriptdirs = {
'../../analyze';
'../../fi... |
cf94471f272a0d24ee11f1f1f2ad75dd0539a0286c734c03b6f610ca638218fa | MATLAB | 4,368 | 141 | function lm = ridgefitModelPredictionToData(data, predictions, alpha, ...
regressionType, offsetFlag)
% Function toFit model prediction to data at single voxel level
%
% lm = ridgefitModelPredictionToData(data, predictions, alpha, ...
% regressionType, offsetFlag)
%
% INPUTS
% data : (double... |
14b2fe606514e630470d9a0c2a5468ccdd45a653919737514a2a6aa22b21c9ba | MATLAB | 4,369 | 133 | function[data,h]=SONGetTextMarkerChannel(fid, chan, varargin)
% SONGETTEXTMARKERCHANNEL reads a marker channel from a SON file.
%
% [data{, h}]=SONGETMARKER(FID, CHAN)
% FID is the MATLAB file handle and CHAN is the channel number (1 to Max)
% DATA is a structure containing:
% DATA.TIMINGS: a length n vector wi... |
5e2d827a744db904e45fd956009ef754eea3276f07eb8be16805f027d0a9f152 | MATLAB | 4,369 | 163 | function varargout=shadedErrorBar(x,y,errBar,lineProps,transparent)
% function H=shadedErrorBar(x,y,errBar,lineProps,transparent)
%
% Purpose
% Makes a 2-d line plot with a pretty shaded error bar made
% using patch. Error bar color is chosen automatically.
%
% Inputs
% x - vector of x values [optional, can be left em... |
962912fca106fe620dfebded9bb07e5ff9f4eefd7affd86f303169d765d645c2 | MATLAB | 4,370 | 103 | function status = filtSurvey( obj, fs, filterType, order, bounds )
% Filters LFP Survey recordings, using a Butterworth filter.
%
% Syntax:
% status = FILTSURVEY( obj, fs, filterType, order, bounds );
%
% Input parameters:
% * obj - object containg survey data
% * fs - sampling frequency
% * filterType - l... |
d4f44f8d0a788a3cabe1b6243b6bef00b85f8ec0c17ad408b54ec01f65163d64 | MATLAB | 4,370 | 133 | % set up paths
[pathstr,name,ext] = fileparts(pwd);
usedir = pathstr;
codedir = pwd;
maindir = fullfile(usedir,'bids','sourcedata','Scan-Lets_Make_A_Deal')
logdir = fullfile(usedir,'bids','sourcedata','Scan-Card_Guessing_Game','logs')
subs = load('sublist_all.txt');
% make default output
out.ntrials(1) = 0;
out.ntria... |
5edb9dec512e8638a2cd1d35c746d2f8674ccaff9e19c5dc6913cb626a6755a0 | MATLAB | 4,371 | 141 | % VL_DEMO_COVDET Demo: VL_COVDET()
% --------------------------------------------------------------------
% Basics
% --------------------------------------------------------------------
im = vl_impattern('roofs1') ;
im = im(end-128:end,128:320,:) ;
figure... |
c5f6f8d0512a01c1cacaabe1036909852b585c4b80d2671920c5709b57621e85 | MATLAB | 4,372 | 135 | function output = smoothCellBody(allpaths,cellBody,fdims)
connIdxRoot = zeros(length(allpaths),3);
emptyIdxs = false(length(allpaths),1);
for i = 1:length(allpaths)
path = allpaths{i};
if(~isempty(path))
pathInd = sub2ind(fdims,path(:,1),path(:,2),path(:,3));
pathIntersect = ismember(pathInd,cellBody);
... |
033d2dca3ae7220b7aac66db925e0df2914ac63796e63e9a4708e0d5e0ff49de | MATLAB | 4,374 | 105 | % preprocessFreeWalkLegTrack.m
%
% Function that takes in full path to .trk file and returns preprocessed
% leg tracking data (leg position and velocity) in struct.
% .trk file is output from APT
%
% Modification of preprocessLegTrack on tethered flies
%
% INPUTS:
% trkFilepath - full path to .trk file
% frameTim... |
3d5139a7a3a39c0999b439d871149a7ac99bff6a51310e3e92c51c6200c12b7a | MATLAB | 4,374 | 142 | function filtered_movement_regressors(path_mov_reg, TR, filt_option, order, LP_freq_min, filt_type, fc_RR_min, fc_RR_max, brain_radius, output)
%% This function applies a low pas filter to the motion numbers and save it with a different number
% %% Input arguments
% path_mov_reg Path until MNINonLinear/Results
... |
845fac82bc720fdf0b4cc2ca860dfe103d7810275fd929fb17f77e304760fc16 | MATLAB | 4,377 | 138 | % plotAvgImgVFictrac.m
%
% Function to plot output of moveCondPairData() as dF/f vs. FicTrac param.
% Plots average across flies and/or individual flies. Plots data only from
% moving time points
%
% INPUTS:
% whichImg - which imaging data to plot ('diff', 'sum', 'right', 'left')
% whichFictrac - which FicTrac pa... |
96d59deb521381fc9293338bdf89e53f1c9780a53d1a526386af50b4ba8b1974 | MATLAB | 4,378 | 155 | % threshDrawROIs.m
%
% Allows user to select ROIs from an image. First, user sets threshold in
% dF/F; then, user draws rough region around ROI. ROI is intersection of
% greater than threshold and within drawn region. Repeat for all ROIs.
% Number of ROIs determined by user input at beginning.
% Uses built-in Matlab... |
de5486db15a581f424663a22101ccbb9d5c8206dd7a9d0c34c6907fc84a13142 | MATLAB | 4,378 | 71 | %experiment name
save_folder = 'results'; %data folder
save_params = {'SC','HAD_S','OPT_S','FOV'}; %which structs to save
%flipper
SC.motors_flags.flipper = 1; %flipper motor ono
%BSI
SC.BSI_settings.flag = ... |
7c0d65e66f3c2e5730f1558f7148c1a9f19a47b75a67cc73d3b63eb7bb63ec1f | MATLAB | 4,379 | 148 | function state = dss_core_symm(state)
% Symmetric DSS algorithm
% state = dss_core_symm(state)
% Calculates denoising source separation for a collection of
% mixed signals.
% Components are forced orthogonal with symmetric orthogonalization.
% Begins or continues calculation defined by state structure... |
1e2d123227303591c719fbb58973331fd8cf01337bfd1ff8c963e198b200f513 | MATLAB | 4,381 | 112 | % This script creates the mesh (both CAD surface mesh and a computational
% wire grid) for a MagVenture figure eight bent coil with 1 A of total
% current
% The output is saved in the binary file coil.mat and includes:
% strcoil.Pwire(:, 3) - set of nodes for all wires
% strcoil.Ewire(:, 2) - set of e... |
92b34723ba979f37a73841a933f0d4669483688da054fe87007e3a1b22c94722 | MATLAB | 4,386 | 151 | function chi_S = SFCR_s_SB_k(deltaB, D_k, DPWeight, maskErode, maskSSV, wG, lambdaSet, x)
% chi_S = SFCR_s_SB_k(deltaB, D_k, DPWeight, maskErode, maskSSV, wG, lambdaSet, x)
% SFCR S-step using Split-Bregmen L1 solver, k-space version
%
% Input: deltaB, D_k, DPWeight, maskErode, maskSSV, wG, lambdaSet, x
%
% DPW... |
4ab2d110d79e57ed6efa6bf859f040533156849857d2823a968f69c9821764f6 | MATLAB | 4,387 | 87 | function p = bemf5_volume_field_potential(Points, c, P, t, Center, Area, normals, Size, eps0, R, flag)
% Computes electric potential for an array Points anywhere in space (line,
% surface, volume). This field is due to surface charges at triangular
% facets only. Includes accurate neighbor triangle integrals for
... |
9a94505e3a44bcc3036cfdfca5afa9945ad842f73064995434a0c943becae8ee | MATLAB | 4,387 | 150 | % make figure on Arp,
% threshold 1.15
excelname='Fig1A Arp3_LifeAct_NoTreatment';
experiment='arp_lifeact'; %use a shorter name to save all the plots
channel1 = readmatrix(excelname,'Sheet','Channel1');
timeinterval=readmatrix(excelname,'Sheet','time interval');
script_BatchProcess_IPI
p2p_allconditions{1}=p2p_all... |
2d1f9a76c35c4bfe49bcb21a7672bdf983439d2bd0d826508320f999fec61bac | MATLAB | 4,389 | 106 | function [I, IRho] = potint(r1, r2, r3, normal, ObsPoint)
% This function computes single potential integrals I = Is(1/r) and
% integrals IRho=Is(vec(r)/r), respectively, and
% follows the method described in: Wilton DR, Rao SM, Glisson AW,
% Schaubert DH, Al-Bundak OM, Butler CM. Potential integrals for ... |
53ea8e30c5ae00141cd05a3c5c486b2175bd6cade824b4ce89b547c15a733719 | MATLAB | 4,389 | 150 | function [] = ExtDataFig08_OptStim_TuningCurve_Neuron()
% Code for plotting the tuning curves of calcium signals induced by optogenetics in Extended Data Fig. 8b,e.
GT = 'pIP10'; Target = 'pIP10_NR'; % Extended Data Fig. 8b
% GT = 'pMP2'; Target = 'pMP2_NR'; % Extended Data Fig. 8e
switch Target
case 'pIP10_NR'
... |
722809306a19132ca979cef3877516f57d99d4f00ce8549f81b9a72727781d14 | MATLAB | 4,392 | 112 | function fH = makeSupplFigure7_DoGPredictions(projectDir,ds,lmmResults, ...
lmmResults_Model,modelName, roisToPlot,cmapModels, useSTRetParams, ...
temporalModel, spatialModel, subjnrs, saveFigs, saveFigDir)
% Function to reproduce supplementary manuscript figure 7:
% panel a/b: V1 time ... |
0c62c88b5744f25641054fbc075fb583788712583ff81ccceff42cadf87a67ac | MATLAB | 4,395 | 103 | % Get permuted split-half of fMRI connectomes
% SI Table 3 manuscript
%
% 2022-08-22 Jonathan Wirsich
[confs, confs_label, groups, eeg_conn_types, bands, atlases, serialized_path] = init_serialized_conf_tle();
perm_iters = 5000;
perm_iters_conf = zeros(length(confs), 1);
for atl=1:1
conn_group = cell(length(... |
9846125f0ab8f212ebcddb95bf3d4adbb8ff8b72d2aef8996fbc7b81826e3aa0 | MATLAB | 4,395 | 196 | function [tablib,msg] = aedes_readphasetable(filename)
% AEDES_READPHASETABLE - Read VNMR table file
%
%
% Synopsis:
% [tab,msg]=aedes_readphasetable(filename)
%
% Description:
% The function reads and interprets a Varian phase table file
% "filename" given as a string input argument. The phase or... |
f86d3a809f9cb4e898e757c4ba0257aae8971eaada8a65b049eb9c48a101d7df | MATLAB | 4,395 | 129 | %% ANOVA stats for DNa02 SPARC2D GtACR1
datDir = '/Users/hyang/Dropbox (HMS)/OptoBehaviorAnalysis-Helen/AnalyzedData';
whichParam = 'stepXLengths';
whichPhase = 'stance';
vels = 0;
NDs = 0;
yScale = [-0.2 0.2];
plotAvg = 'mean';
plotIndiv = true;
plotDiff = false;
uni = plotOptomotorOptoDiffLegStepParam_allFlies(datD... |
a65b46dc7fe03d4527e2610a853f501818546a4bd75fd79f38cfbbb96484ded0 | MATLAB | 4,399 | 92 | function [P, t] = meshsurface(Pcenter, a, b, M, flag)
% Outputs a 2-manifold P, t mesh for a single arbitrarily
% bent conductor. The conductor could be either open or closed. In the
% last case, the start point and the end point must coincide.
% Inputs:
% Pcenter - centerline of the conductor in 3D [:, 3];
... |
84dd25a44099809ac5c3133435c0b39bb78028e929500ea5a2b4756a57ce86dd | MATLAB | 4,405 | 115 | % Fig 10. Benchmarking analysis results for sample size
% 10b. Binarry Classification
% 10c. Regression
%% Set up
clear; clc;
% Load Data
basedir = '/Users/donghee/Documents/project'; % set a path to local project directory
githubdir = '/Users/donghee/github'; % set a path to local git directory for external code... |
b88550f0f8479d6778e749ba937697f9570d649d597e215cc93991ff5cd49dbc | MATLAB | 4,409 | 85 | function out = groupzproject(images,groupsize,type)
% out = groupzproject(images,groupsize,type)
%
% Function to project a 3D matrix along the third dimension in groups of
% the specified size. The inputs are
%
% - images - 3D matrix to project in groups
% - groupsize - Size of projection group. Needs to be... |
581add89d8b6510551ad6b79c5d58a72bddefd048946f11b3f1ed88a25f61495 | MATLAB | 4,411 | 76 | function active_track_indecies = PlotFrame(FigH, Frame, Tracks, frame_index, all_deleted_tracks, behavior_colors)
figure(FigH)
clf;
%imshow(Frame,'InitialMagnification',300);
imshow(Frame,'InitialMagnification',40, 'Border','tight'); %this determines the figure size that the mpeg encodes, which has to be a particular ... |
4b1b8d18934bc20759267e2b6eb147fc50cf95bb594055769d2d2835bf8859ba | MATLAB | 4,412 | 117 | %This script allows the user to pick a watershed region in a t-SNE map and
%finds when the animal stays in that region and plots their behaivor
%% STEP 1: establish plotting constants
N_rows = 4;
N_columns = 4;
N = N_rows*N_columns;
fps = 14;
frames_before = 1*fps-1;
frames_after = 1*fps;
duration = frames_before+fra... |
9b121e0d35e08d20256d83ed8d3a4c01869c1b761efe6bafcce9e230d000b3b0 | MATLAB | 4,413 | 121 | % shiftRotateNormalizeLegPos.m
%
% Function that takes in raw leg X and Y coordinates (output from
% loadTrkFile) and returns coordinates that are shifted and rotated to
% align all the frames to the center point of the fly (midpoint between 2
% midlegs) and normalized so the units are body lengths (instead of
% pi... |
5b00e97bfb5ccb27b86d162d22f543aa8913641d64024de3facfa448331cb001 | MATLAB | 4,420 | 147 | function h = plotCircadian( obj, varargin )
% Plot the circadian mean power.
%
% Syntax:
% h = PLOTCIRCADIAN( obj, ax );
%
% Input parameters:
% * obj - object containg data
% * ax (optional) - axis where you want to plot
%
% Example:
% h = obj.PlotCircadian();
% h = PLOTCIRCADIAN( obj );
% h = PLOTCIRCAD... |
107cc86c0effa1e16d80b9a55833390e29b91dcb1e1361b98aca0397efb7f6c9 | MATLAB | 4,421 | 93 | % ----------------------------------------------------------------------- %
% H Y D R A %
% ----------------------------------------------------------------------- %
% Function 'sampen' computes the Sample Entropy of a given signal. %
% ... |
f69bc6a67557383e0b763bc099eb3d18e547d380a0748fab0a6cd64814b54430 | MATLAB | 4,421 | 117 | function simseq_prepareStimulus(sessionDir)
% sessionDir = vistasoft session in simseq project folder.
% for example, '/oak/stanford/groups/kalanit/biac2/kgs/projects/spatiotemporal/experiments/simseq/data/subj01/session1'
% Get number of runs/files
d = dir(fullfile(sessionDir,'simseqPRF*.mat'));
% Define params
fs =... |
3589013cc7711ef729fa22111c90d934750d55c12b1acedfd299f0669c001e1b | MATLAB | 4,423 | 130 | function vl_printsize(varargin)
% VL_PRINTSIZE Set the printing size of a figure
% VL_PRINTSIZE(R) adjusts the PaperPosition property of the current
% figure to make the figure paper width equal to R times the width
% of a 'uslsetter' page, while preserving the aspect ratio of the
% figure. Then, it sets the P... |
46856e5d7cba1b718a66fff3123baed8ee3a6e33145e1a999b66c97cabe883a8 | MATLAB | 4,423 | 157 | % Marc Normandin, Muzzio Lab, Psychological & Brain Sciences, University of Iowa, 2024
function make_stabilitybfo90_percell_formatted_for_sigmastats(analysisSettings, analysisResults, outputFolder)
BestAligned = analysisResults.BestAligned;
F = 'NormalPerCell90';
T = analysisResults.(F);
[SessionsToGroups] = load_se... |
38da088172752141b65de1e5ef52c237cfc694f274fd18702f3fa99d2b9cc689 | MATLAB | 4,424 | 123 | addpath(genpath('.'))
gcp;
%%
% name of the videos
list_Exp_ID = { 'c25_59_228','c27_12_326','c28_83_210',...
'c25_163_267','c27_114_176','c28_161_149',...
'c25_123_348','c27_122_121','c28_163_244'};
num_Exp = length(list_Exp_ID);
rate_hz = 20; % frame rate of each video
avg_radius = 4;... |
c567c085c79f9f71a14a2d6483995e634cc017624f72ead1b936e9ca86502454 | MATLAB | 4,426 | 94 | % data_ind = 1; dir_SUNS_sub = fullfile('SUNS_TUnCaT_SF25','4816[1]th5');
% data_ind = 2; dir_SUNS_sub = fullfile('SUNS_TUnCaT_SF25','4816[1]th4');
% data_ind = 3; dir_SUNS_sub = fullfile('SUNS_TUnCaT_SF25','4816[1]th4');
% data_ind = 4; dir_SUNS_sub = fullfile('SUNS_TUnCaT_SF50','4816[1]th4');
% data_ind = 1; dir_SUNS... |
d6acd948976fb741fd656bd9f82041097ccd67855cdfff5bd94487b91770f040 | MATLAB | 4,431 | 121 | % addCalculatedVar.m
%
% usage: addCalculatedVar(varname,varval,stimfileName)
% by: justin gardner
% date: 08/06/10
% purpose: add a computed variable to a stimfile
%
% e.g.: addCalculatedVar('newvar',[1 3 4 5 6 2 8 10],'100728_stim01');
% To specify taskNum (default=1) and phas... |
5be827b9d25f36a08a987dcc3770c7c58d724c33b693ea05ad99b0cd95a3af7d | MATLAB | 4,437 | 169 | function nifti3dto4d(infiles,outfile,varargin)
% NIFTI3DTO4D - Convert a series of 3D NIfTI volumes to a single 4D NIfTI
% file
%
% Synopsis:
% data = nifti3dto4d(infiles,outfile,param1,value1,param2,value2,...)
%
% Description:
%
% Examples:
%
% See also:
%
% This function is a part of Aedes ... |
e11aab5150beba2dab8be37e0dddfabd57958be5b9c97e4343c768a82d749115 | MATLAB | 4,437 | 115 | % findFlyNotMovingMidlegs.m
%
% Function to find when the fly isn't moving, based on the criteria that
% the 2 midlegs are not moving in X (velocity below threshold).
% Finds based on smoothed velocity below threshold and non-smoothed
% velocity also below (separate) threshold
% Returns indicies of not moving times
%... |
9f7ae6ae224578752de12cfa89f12f7b92eda981b7d9c961aee10605ba1e1ac7 | MATLAB | 4,440 | 116 | %% write_mff_history.m
% Matlab File
% author Colin Davey
% date 4/15/2014
% Copyright 2014 EGI. All rights reserved.
%
% This function adds an item to the list of history items. It is intended
% to be run after running code that either a) creates a new mff file based
% on an existing one, or b) modifies an exis... |
41b57a26ac696fa4d1b718534ca7451d034729dc4a0d39d0ed6d11a5ae3972fc | MATLAB | 4,441 | 96 | % re-compute tune from saved Tuning, and updates unitsTable if UPDATE_unitsTable==1
% uses the structs and functions of tune and tuning, but saves them corr
% uses unitsTable while running, but saves the data in:
% - unitsTable (mat and xlsx) if UPDATE_unitsTable==1
% - corrTable (mat and xlsx) if UPDATE_corr... |
77705512915d6f146641cc36a36b0209a18ef2c71c2983723bb48d2eec2804b6 | MATLAB | 4,441 | 132 | function [IFF]=openiff(fid,LEN)
% OPENIFF is an auxillary function to SOPEN for
% opening of IFF files
%
% Use SOPEN instead of OPENIFF
%
% See also: fopen, SOPEN
%
% References:
% This program is free software; you can redistribute it and/or
% modify it under the terms of the GNU General Public License
% as pu... |
ec95ba5932b02b3b2999e570ff232f348791f760721e5aa1f460a19fed651b67 | MATLAB | 4,442 | 143 | function [psd_out] = one_event_res_psd(src_spk_vec,stevt,endevt,psdopt)
%one_event_res_psd.m
win_len_msec = psdopt.win_len_msec;
psd_out.win_len_msec = win_len_msec;
assert(mod((endevt-stevt)*1000,win_len_msec) == 0,...
'this function assumes that mod(duration,win) = 0')
src_spk = toCol(src_spk_vec);
min_oscil_s... |
dc28a5b6593f8ac8bb272fe0b5e2ec9f11ca7e61bae6c007fbb148bb51811efa | MATLAB | 4,448 | 172 |
function output_info=cnn_layer_dense_softmaxloss_forward(input_info, layer, work_info_batch)
stageout_info=layer.stageout_info;
stage_idx=stageout_info.stage_idx;
mc_info=gen_mc_info(input_info, work_info_batch);
work_info_batch.ref.finalloss_mc_info_stages{stage_idx}=mc_info;
examp... |
92c2d1c1c266539c25a7ab88e0edc155dde6d7ee2b404734e75599e56de7017e | MATLAB | 4,451 | 180 | function [ax] = specStatFig(specStruct,fld1,fld2,figopt)
%specStatFig.m
clrsMap = containers.Map();
clrsMap('sig') = [0 1 0];
clrsMap('orig') = [0 0 0];
% comp = shuffling "compensated" (orig/mean shuf)
clrsMap('comp') = [0.3020 0.0784 0.5490];
clrsMap('thr') = ones(1,3)*0.35;
clrsMap('shuf') = [1 0 0];
clrs... |
6ae57f2b442ee25672a2d65f2c0df34fd9f205d4b5075a36748c777f09ede8a4 | MATLAB | 4,454 | 44 | function rval = rtest_3_cojocaru()
% The regression test for the bug reported by Radu Cojocaru on 9 November
% 2006. The error is getting erroneous edges in the minimum spanning tree.
% The cause of the error is that mst outputs exactly n-1 edges for the
% minimum spanning tree. However, if the graph is disconnecte... |
ef0a67a8505b3a5472db46c786c38b2cf555e0b5f4255922753ba4c1e692997b | MATLAB | 4,454 | 164 | function hdr = load_analyze_hdr(hdrfile)
% hdr = load_analyze_hdr(hdrfile)
%
% hdrfile is the header file (eg, f001.hdr) or a basename (eg, f001).
%
% hdr.dime.dim(1) = number dims
% hdr.dime.dim(2) = number of items in first dim
% hdr.dime.dim(3) = number of items in second dim
% ...
%
% hdr.dime.datatype:
% 0 unk... |
29d584c450888ca42e304f1634771c50bc24ac43d4a4490a1d079c2460f79e57 | MATLAB | 4,455 | 99 | function [targetonfig,x_fig,tform_fig,tform_fig_inv,BregmasOnPano,errorIdx] = RotationMethod(pano,imgc,target)
%ROTATIONMETHOD ±ÌÖÌTvð±±ÉLq
% Ú×à¾ð±±ÉLq
pointsPano = detectKAZEFeatures(pano,'Threshold',0.00001);
[featuresPano, pointsPano] = extractFeatures(pano,pointsPano);
BregmasOnMask = [s... |
87604caa70ad76d3c637014a0d3ee524234012b19af48dd7f4176518b47146d9 | MATLAB | 4,457 | 127 | % computeAvgFictracOpto_1Fly.m
%
% Function that extracts the mean, std err, and individual responses
% to optogenetic stimulation of different durations and intensities (ND
% filters) for a single fly.
% User selects all pData for that fly through the file selection GUI
% Saves the data as a struct in path specified... |
dec0eb89dd59748d6f80f253424503385608575cf91e5a815c9ed8d03a9973e8 | MATLAB | 4,459 | 109 | % This is a one-off script. It was written to process the concatenated
% CNFMe into the separate trial results
%% READ MEE
% Run this only when the experiment.json is referencing the UNCATTED
% session names or it will overwrite what we want!!!
close all
clear all
clc
config = mulana_json_read(fullfile('R:\chengs_ta... |
9568356462f65a842905bf30c43c3e764a7cd4ec8156333f4e9ae5ddeb6eade3 | MATLAB | 4,461 | 108 |
%# usage: [Zz, Zp, Zg] = bilinear(Sz, Sp, Sg, T)
%# [Zb, Za] = bilinear(Sb, Sa, T)
%#
%# Transform a s-plane filter specification into a z-plane
%# specification. Filters can be specified in either zero-pole-gain or
%# transfer function form. The input form does not have to match the
%# output form. 1/T is the... |
cc307851390ddc1d4734a65886f51f197a26353ab9f85dccdbbff1a82a7f4d67 | MATLAB | 4,461 | 112 | %% CREATE VARIABLES/ SET PARAMETERS
if ismac
base = '/Volumes/Runyan/Potter et al datasets/';
else
base= 'Z:\Potter et al datasets\';
end
datasets = {'EC1-1R/2021-11-05/', 'EC1-1R/2022-01-13/','FL5-3L/2022-03-09/','FL5-3L/2022-04-18/','FU1-00/2022-03-17/','FU1-00/2022-05-10/','GE3-00/2022-10-27/',...
'G... |
7bb1423a6254c86678a3ec3e2261c1d9be73fe6696d0bd721934844c5b585e18 | MATLAB | 4,464 | 120 | function [ stimAmp ] = extractStimAmp( obj, data, parameters )
% Extract and visualize stimulation amplitude from Percept PC JSON files
%
% Syntax:
% [ stimAmp ] = EXTRACTSTIMAMP( obj, data, parameters );
%
% Input parameters:
% * obj - object containg data
% * data - data from json file(s)
% * parameters - ... |
40c7d8877f873f592ab32b3ded424335ae147a9861e51e07243e5c84a03cc79a | MATLAB | 4,468 | 117 | % preprocessFicTracOnly.m
%
% Temporary variant of preprocess just to update FicTrac data (because
% previous lowpas filter cutoff wrong).
%
% On imaging data:
% Reads in ScanImage .tif files. Aligns each time series. Saves the aligned
% series, unaligned series, mean image, and metadata output by ScanImage.
%
% On ... |
b96f034c6598fc3fe168534760b4a411960782a7f4bd161ce4f34f22da8c2788 | MATLAB | 4,468 | 122 | % getVarFromParameters.m
%
% $Id:
% usage: getVarFromParameters(varname,e,<allPossibleVals=0>)
% by: justin gardner
% date: 03/16/07
% purpose: get a variable name from task parameters, could be
% will return the full qualified name of the variable
% e is returned f... |
1763ff9de037b6371dc17bbe17bf8d95110897daeeeb715e5888c032a525a17d | MATLAB | 4,469 | 152 | function VOR_Summary_Amin_gcStep(params)
%% Extract important Information from Excel file and result .mat file
figg = figure(234);
ka = tight_subplot(3,3,[.025 .025],[.025 .025],[.025 .025]);
figg2 = figure(235);
ta = tight_subplot(2,2,[.025 .025],[.025 .025],[.025 .025]);
slotVec = [1, 4, 5, 6, 8, 10, 12, 15, 16];
lo... |
30e6683e366f38808c9d19377373ad12ab71fb32519069d8276103176908be29 | MATLAB | 4,470 | 85 | function vol_params = check_vol_params(vol_params)
% vol_params = check_vol_params(vol_params)
%
% This function checks the elements of the struct vol_params to ensure
% that all fields are set. Fields not set are set to a list of default
% parameters. The struct checked is:
%
% - vol_params - Struct with pa... |
43444b7404554b210b612b3115e3cb17bdb0c3d7335c8a40d9400273860b8581 | MATLAB | 4,471 | 117 | % preprocessOpto.m
%
% Function to update metadata spreadsheet for behavior-only experiments
% run using the EphysCode-Helen codebase for each trial with all the
% metadata that is saved during the experiment. Fields that require user
% input posthoc are left blank.
% Assumes metadata spreadsheet has the arrangement... |
b82fdacbd085aa42a0c35eee736758f9eb145ec089d5b31d9bdb0e112348f011 | MATLAB | 4,473 | 90 | clear
stable=load('stable.mat');uncertain=load('uncertain.mat');reverse=load('reverse.mat');restable=load('restable.mat');
shSI=[{nan(493,1000)} {nan(493,1000)} {nan(493,1000)} {nan(493,1000)}];
for i=1:493
go=[stable.population.goHit.eachDF{i}(46:90,:) stable.population.goMiss.eachDF{i}(46:90,:)];
goR{1}=... |
81687923897375331d75f79cae68555ce7df3e110ba583fdb7a32a99274168fc | MATLAB | 4,475 | 134 | clear all
close all
clc
trackedParts = ml_cai_dlc_to_tracked_parts(pwd);
iEarLeft = 1;
iEarRight = 2;
iMiniscopeLed = 3;
iHip = 4;
iTailBase = 5;
dx = trackedParts(iEarRight).x - trackedParts(iEarLeft).x;
dy = trackedParts(iEarRight).y - trackedParts(iEarLeft).y;
thetaRad = atan2(dy, dx);
i = find(thetaRad < 0);
the... |
9dbe089cfb32cfc1dcbfc9f4d2a9f3cc341542e9019f9e5a594fa1e9e85ffcb9 | MATLAB | 4,477 | 138 | %{
Provides comparison of various moving averages on learned component traces.
INSTRUCTIONS:
1. Set "Current Folder" to the one containing the excel file.
2. Ensure data is in the first sheet, with "time" as the last column.
3. Modify the five variables below as needed.
4. Run script.
Generates figures displaying... |
bb7b1f69da993eb316c0475c116257b4deb7e5a5fcf7db3d2d10213df919b098 | MATLAB | 4,478 | 150 | function dcm_info(pathname,add_params)
% Print some information from DICOM files exported from PACS
% Copyright (C) 2006 Juha-Pekka Niskanen <Juha-Pekka.Niskanen@uku.fi>
%
% Department of Physics, Department of Neurobiology
% University of Kuopio, FINLAND
%
% This program may be used under the terms of the GNU General... |
c41bf553a1f10b714c6dd1eac8ddd2c139282f23042428dc3cb1c8421f4737dd | MATLAB | 4,479 | 136 | % computeSmoFictrac2P.m
%
% Function that takes in one or more pData files and computes a very
% smoothed version of the FicTrac velocity parameters. To be used for
% extracting turning bouts, not to be used as faithful representation of
% actual velocities.
% Select pData files through GUI. These must have fictrac... |
1df18147a2baf4c74d0b8f2459e1ff34f3b11cde28770b6ead66d26db5d72636 | MATLAB | 4,481 | 116 | % anigauss - Recursive anisotropic Gauss filtering
% Usage:
% out = anigauss(in, sigma_v, sigma_u, phi,
% derivative_order_v, derivative_order_u);
%
% v-axis = short axis
% u-axis = long axis
% phi = orientation angle in degrees
%
% parameters sigma_u, phi, and derivative_order_{v,w} are option... |
1ef39da4521a6e3837959ad00158bda2343d3b0066da4a49694169d426c8ef2a | MATLAB | 4,481 | 165 | function varargout=shadedErrorBar(x,y,errBar,lineProps,transparent)
% function H=shadedErrorBar(x,y,errBar,lineProps,transparent)
%
% Purpose
% Makes a 2-d line plot with a pretty shaded error bar made
% using patch. Error bar color is chosen automatically.
%
% Inputs
% x - vector of x values [optional, can be left em... |
ed4fb48059942e6fa87bdc576c02420f0206f2c4eed859db8d47614e703b30f3 | MATLAB | 4,483 | 137 | function[data,h]=SONGetRealMarkerChannel(fid, chan, varargin)
% SONGETREALMARKERCHANNEL reads an RealMark channel from a SON file.
%
% [DATA {, HEADER}]=SONGETREALMARKERCHANNEL(FID, CHAN{, START{, STOP{, OPTIONS}}})
% FID is the matlab file handle, CHAN is the channel number (1=max)
%
% [DATA, HEADER]=SONGETREALMARKER... |
aecdd35c83748dd1fbdf558609bf3b7e3852f47ce38497fea9ac02533ca41df8 | MATLAB | 4,484 | 119 | %% CREATE VARIABLES/ SET PARAMETERS
if ismac
base = '/Volumes/Runyan/Potter et al datasets/';
else
base= 'Z:\Potter et al datasets\';
end
datasets = {'EC1-1R/2021-11-05/', 'EC1-1R/2022-01-13/','FL5-3L/2022-03-09/','FL5-3L/2022-04-18/','FU1-00/2022-03-17/','FU1-00/2022-05-10/','GE3-00/2022-10-27/',...
'G... |
61f8a860c7bdb365f827471c65039ca49253473b5857e55c07fcec395ec8393a | MATLAB | 4,485 | 149 | close all
clear all
clc
tfolder = pwd;
d1 = load( fullfile(tfolder, 'behavcam_roi.mat') );
% The coordinates of the reference points in the video frame (pixels)
refVidPts = [d1.behavcam_roi.inside.i'; d1.behavcam_roi.inside.j'];
% The coordinates of the reference points in the canonical frame
% For the rectangle/sq... |
8c4a2e3927b289b23e5c23ccc7adcf8c8e777f7352ae922575872cedb5f05dca | MATLAB | 4,488 | 159 | % fig3_res_illustrate.m
% generates figure 2 using stored values used for manuscript
%%
clear all;
close all;
clc;
%% addpath if not added yet
% assumes script run within local directory
scriptdirs = {'../../plot';'../../helper_functions'};
addpath(scriptdirs{:})
datadir = '../fig2';
datafile = 'figs_2_3_shuf_res_ill... |
e59e9a6f556323d7f16d2e2256b52707e93de54554f632d6865d67fd43bde921 | MATLAB | 4,488 | 148 | % plotAvgEphysContParam_fly.m
%
% Function to plot output of getCorrelationEphysContParam_cond_all() as
% average across flies and/or individual flies
%
% INPUTS:
% datDir - path to folder containing savePCAinterpStepParam() output files
% avg - 'mean' or 'median' for which type of average to plot
% indivFlies -... |
aed453bcb709fa5f3b9296770e3f9bdd46389cad79d0787c5984e6cf1a177e73 | MATLAB | 4,489 | 117 | function [dat] = ft_preproc_padding(dat, padtype, prepadlength, postpadlength)
% FT_PREPROC_PADDING performs padding on the data, i.e. adds or removes samples
% to or from the data matrix.
%
% Use as
% [dat] = ft_preproc_padding(dat, padtype, padlength)
% or as
% [dat] = ft_preproc_padding(dat, padtype, prepadleng... |
21653cc1e0641a42a10cc369f8f9a4f37682ea23946f47aa1c63238d4a2dbb9c | MATLAB | 4,490 | 111 | %% para
%% run after matlab 2018 version
file_name_all = {'Edge_GLM_gene_str_dis_commu_gene_PLS_DBM.mat',...
'Edge_GLM_gene_str_dis_commu_gene_PLS_VBM.mat'};
for ifile = 1:length(file_name_all)
file_name = file_name_all{ifile};
load(file_name)
z_thr = -icdf('normal',0.05,0,1);
GO_size_min = 0;
... |
c24ac5b7d9955c2855ac4c404ac5485aa6ee7a5117d54fcfa5174303f864983a | MATLAB | 4,490 | 180 | clear all
close all
clc
% This script reads in EVfiles from the ISTART project and counts the
% number of high/low, accept/reject we have for each participant.
% Daniel Sazhin
% DVS Lab
% 01/26/2022
% Temple University
%% Set path and subjects
maindir = 'C:\Users\danie\Documents\Github\istart\UGDG\Behavioral_Analys... |
2cd3ee297d28e2c907209ccc1ce6dad66e25dcc51d948075be48c00f0de88545 | MATLAB | 4,492 | 134 | % computeSmoFictrac.m
%
% Function that takes in one or more pData files and computes a very
% smoothed version of the FicTrac velocity parameters. To be used for
% extracting turning bouts, not to be used as faithful representation of
% actual velocities.
% Select pData files through GUI. These must have fictrac, ... |
5d300f2852db88a0838617d06d81d6d5fc9b2e1a397183703d8fc4a7f8b8055a | MATLAB | 4,493 | 144 |
%# Generate an Chebyshev type II filter with Rs dB of stop band attenuation.
%#
%# [b, a] = cheby2(n, Rs, Wc)
%# low pass filter with cutoff pi*Wc radians
%#
%# [b, a] = cheby2(n, Rs, Wc, 'high')
%# high pass filter with cutoff pi*Wc radians
%#
%# [b, a] = cheby2(n, Rs, [Wl, Wh])
%# band pass filter with ed... |
d3d7037253a0f7ac33083107328efa660fe203b008e1495a6483a08701f7acaa | MATLAB | 4,493 | 153 | function [bestWaveletsAll, PalmNet] = findBestWaveletsTesting(imagesCell, orient_default, orient_best, PalmNet, numImagesToUse, imageSize, param, stepPrint, plotta)
%init
bestWaveletsAll(param.numBestWavelets).filter = [];
%--------------------------------------
%Compute parametrized wavelets
parametrizedWavelets = ... |
522a6e4faeaa69a3ef26a1f5cb4c39ae634fd6868e3c3860f69e8fb5c3309dcb | MATLAB | 4,495 | 165 | %% MAIN function to extract NB propagation
%% Loading data
clear
close all
clc
[filename, pathname, filterindex] = uigetfile('*.mat', 'Select NetworkBurst file');
if isempty(strfind(filename,'NetworkBurstDetection'))
errordlg('Selection Failed - End of Session', 'Error');
return
end
cd(pathname);
load(filena... |
f61517a9bff196c7c2e707a45c48d5735c757a9b878cb34cacdf58307a517b58 | MATLAB | 4,495 | 124 | addpath(genpath('.'))
gcp;
%%
% name of the videos
list_Exp_ID={'Mouse_1K', 'Mouse_2K', 'Mouse_3K', 'Mouse_4K', ...
'Mouse_1M', 'Mouse_2M', 'Mouse_3M', 'Mouse_4M'};
num_Exp = length(list_Exp_ID);
rate_hz = 20; % frame rate of each video
avg_radius = 9; % added_refined_masks
% avg_radius = 10; % original_m... |
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