sha256 stringlengths 64 64 | language stringclasses 28
values | size int32 1 491k | lines int32 1 23.2k | content stringlengths 1 200k |
|---|---|---|---|---|
ed499a987465d53de4a83b4b7586473f93db7d1bcda6f2f5c21d9fbba9071fbe | MATLAB | 4,645 | 148 | function output=get_outputs(in_pial, in_white, xmin, ymin, zmin, scale, pialv,cclabel)
M=(in_pial-in_white);
M(M<0)=0;
if isempty(cclabel)
cce=0;
else
cce=1;
end
disp('removing voxels around corpus collosum')
tic
%remove any voxels in M on the cc (if info is available)
%to do, M is currently not ... |
bad01177bd3027bde3ea6dcc39305c00b35d16b493ab020e38105e8fd679fc2c | MATLAB | 4,647 | 99 | % permute group_labels of subnetworks
% targetMetric_group: mean metric to compare to
% allsub_fMRI_select: selected fMRI (total no of subjects along groups)
% groupsize: size of each group
% masks(): mask of subnetworks
%
% 2022-08-22 Jonathan Wirsich
function counts_p = permute_subjectgroups(iter, b, ... |
00693883f15f3d6fbd25e42b1eaade7b75b55d55da73e4e6d56be3b8c98f204c | MATLAB | 4,648 | 136 | classdef CSRMatrix < types.hdmf_common.Container & types.untyped.GroupClass
% CSRMATRIX A compressed sparse row matrix. Data are stored in the standard CSR format, where column indices for row i are stored in indices[indptr[i]:indptr[i+1]] and their corresponding values are stored in data[indptr[i]:indptr[i+1]].
% RE... |
4d11450c2da70feee72e9f91f899b244fb97d2511b19c9dbe4a227425a610a2d | MATLAB | 4,648 | 167 | function [psd_out] = interevent_psd(src_spk,start_events,end_events,boundSpec,psdopt)
%interevent_psd.m
% runs both uncorrected and shuffle-corrected psd
poolobj = gcp;
win_len_msec = psdopt.win_len_msec;
psd_out.win_len_msec = win_len_msec;
filterFRs = optCheck(psdopt,'filterFRs',false,[true false]);
storeGMMinfo =... |
5791e134cddcc1afeff8c72cdb3e84f3825071791639872bf12466d999a68e52 | MATLAB | 4,649 | 207 | %% GET PCA VARIANCE EXPLAINED FOR ALL ANIMALS
all_som_explained=cell(6,1);
all_pv_explained=cell(6,1);
pyr_explained=cell(6,1);
numsom=nan(6,1);
for ds = 1:6
curpv_ex=nan(6,1);
curpyr_ex=nan(6,1);
all_som_explained{ds}=all_pca(ds).som.explained(1:5);
numsom(ds)=length(all_pca(ds).som.explained);
... |
8ea6f8f25f458dbd7a21092251fcf0339104fab9cca6095897eea64f28627ab9 | MATLAB | 4,649 | 114 | function cfg_artifacts=st_expand_artifacts_to_neighbours(cfg_artifacts)
% ST_EXPAND_ARTIFACTS_TO_NEIGHBOURS expands grid-based artifacts to neighboring channels
%
% Non-artifactual channels are labeled artifactual when proportion of artifactual neighbouring channels >= channelexpandthresh.
% Lower values are ... |
952812be17012af0e212feb54014ff6a0d3252de4068b92ce2194b2bd636f9b3 | MATLAB | 4,652 | 130 | function [F,acc,conf,SSWs,SSBs,F_rand,acc_rand,conf_rand,SSWs_rand,SSBs_rand] = test_stats(stg,projected_test,M_class)
% gets the projected test set and centroids of the training sets, and
% returns multiple cross-validation measures.
%
% [F,ACC,CONF,SSWS,SSBS] = test_stats(STG,PROJECTED_TEST,M_CLASS) gets the
% p... |
eeeeeb5b0cf0a88b313c7bbedb0368733bce826be1eebd28eab4d283c784c30a | MATLAB | 4,653 | 155 | function [] = ExtDataFig04_AveTimeCourse_OptStim_Song
% Code for plotting the time course of and the proportions of pulse and sine song in Extended Data Fig. 4e,h.
GT = 'dPR1'; % Extended Data Fig. 4e
% GT = 'TN1SG'; % Extended Data Fig. 4h
%% parameters
nTrials = 3;
nStim = 6;
T = 1370; % T
DAQrate = 10000;
x1 = [0... |
839d9a77c7f76c1b187cfa209d9b807903ea12d0710ff2a445deaee9c6c7317e | MATLAB | 4,654 | 153 | function config = vl_override(config,update,varargin)
% VL_OVERRIDE Override structure subset
% CONFIG = VL_OVERRIDE(CONFIG, UPDATE) copies recursively the fileds
% of the structure UPDATE to the corresponding fields of the
% struture CONFIG.
%
% Usually CONFIG is interpreted as a list of paramters with their
... |
b8730381ac5f2398562ac563d74bbd44d3c81c4991a08eecb3ae7c7919603670 | MATLAB | 4,654 | 126 | % ficTracSignalDecoding.m
%
% FICTRACSIGNALDECODING takes a fictrac position value and extracts ball
% velocity. This function will take a FicTrac output signal as aquired by
% the DAQ as an analog signal and solve for the ball's angular velocity in
% the given dimention. To do this the signal is then UNWRAPPED to... |
e2cf4dbae011eee3381a1799e30d3a673c624242a973fbd41d16c75d621c835d | MATLAB | 4,654 | 157 | %%
function varargout = eyecam(vid, eyetrack, nframes)
if ~exist('eyetrack','var')
eyetrack = 0;
end
if ~exist('nframes','var')
nframes = 180*30;
end
himg1 = [];
himg2 = [];
% Preallocate arrays for storing time
time1 = zeros(nframes,1);
time2 = zeros(nframes,1);
time3 = zeros(nframes,1);
% Start recording!... |
a254bb247910827c3c079b97abbf66e1af4490f57ec7c1de48161a6efaa17c51 | MATLAB | 4,657 | 96 | function [x, TFI_params] = delta2chi_TFI(deltaB, D, DPWeight, mask, TFI_params)
% [x, TFI_params] = delta2chi_TFI(deltaB, D, DPWeight, mask, TFI_params)
%
% Auto-TFI method using Gaussian Newton's method (NGCG)
% with auto determined P_map, plus Tikhonov regularization as in LN-QSM
% Ref: Liu et. al, 2020, 83, 271... |
5ba95489e741db5319421af0432a79efda735035e853952fa5445396cf7474b6 | MATLAB | 4,660 | 129 | % zipFfmpgFictracVid.m
%
% Function given trial with FicTrac video, generates .mp4 file from
% individual tiffs and zip file of same tiffs for that trial.
% Called by preprocessFictracVidFiles(). Does not stand alone.
%
% INPUTS:
% inputParams - metadata about trial, loaded from saved data
% scriptsPath - full p... |
8537475e8b0d677b4d46c5d495bb1d962b7e1827ac7bdaeab738f92eae5593df | MATLAB | 4,666 | 81 | function [] = D5_Conditions_HLM(badSubs)
data_folder = 'Z:\Load\MEG Data\proc_data\'; %Windows
save_folder = 'Z:\MATLAB\Perceptual_Load\FieldTrip\Results\group_level\Lateralization_indices';
load 'Z:\MATLAB\Perceptual_Load\FieldTrip\Results\group_level\Alpha\ROI_alpha\ROI_dt_attRight_nl'
load 'Z:\MATLAB\Perceptual_Loa... |
cc1c508dccc22a9fb52a9a665452129f89eb723cbe682181939593a66c5115eb | MATLAB | 4,672 | 165 | close all
clear all
clc
minDistance = 10;
%a = 100;
%poly = [0 0; a, 0; a, a; 0, a];
a = [0, 20];
b = [0, 0];
c = [30, 0];
d = [30, 20];
refCanPts = [a(1), b(1), c(1), d(1); a(2), b(2), c(2), d(2)];
poly = refCanPts';
figure
plot(poly(:,1), poly(:,2), 'b-*', 'linewidth', 10)
hold on
plot([poly(1,1), poly(end,1)], [... |
6741469b493d125e29b0bfe02bab9809043adff981714fb9ea0ebdc206cb3238 | MATLAB | 4,673 | 154 | % mglCameraCapture.m
%
% usage: mglCameraThread(<commands>)
% by: justin gardner
% date: 10/14/2019
% purpose: Function that starts and interacts with a thread so that we can interact
% with an FLIR camera asynchronously.
%
% First you start the thread which initializes th... |
bdf8a7b4789b734538b1668ef88d02c70fa6eb22330b8ef89fa8c425bd67b879 | MATLAB | 4,674 | 144 | % Code to produce supplementary figure to figure 2
clearvars
close all
load("colour.mat")
% load AUTO data
load('KpLCr1.dat')
load('KpLCr2.dat')
% identify the stability of equilibria
Stable=zeros(length(KpLCr1),4);
Unstable=zeros(length(KpLCr1),4);
for i =1:length(KpLCr1)
Stable(i,1)=KpLCr1(i,1)... |
219e5c6e015a6292efabb21645ba8b75145818884ee87b5819975833e4a98ff5 | MATLAB | 4,678 | 116 | % mglTestMirror.m
%
% $Id: mglTestMirror.m
% usage: mglTestMirror()
% by: ben heasly
% date: 09/01/2022
% copyright: (c) 2006 Justin Gardner, Jonas Larsson (GPL see mgl/COPYING)
% purpose: Demonstrate usage of "mirror mode" graphics windows.
%
% This script demos mgl "mirror mo... |
b4cbe2f3c822b539f9474e24bdb22833a8729d4c9b1e69296952b41685183c7b | MATLAB | 4,681 | 69 | function psf_params = check_psf_params(psf_params)
% psf_params = check_psf_params(psf_params)
%
% This function checks the elements of the struct psf_params to ensure
% that all fields are set. Fields not set are set to a list of default
% parameters. The struct checked is:
%
% - psf_params - Struct conta... |
028d27456c03a4c9550a10e540605922cb7e1bb853130d6d782b13c1861d033a | MATLAB | 4,682 | 122 | % Fig 9. Benchmarking analysis results for model levels
% 9b. Binarry Classification
% 9c. Regression
%% Set up
clear; clc;
% Load Data
basedir = '/Users/donghee/Documents/project'; % set a path to local project directory
githubdir = '/Users/donghee/github'; % set a path to local git directory for external codes
... |
7af5029e60dcff696e762714445a5501cadb9c8cdaafe2395bba2abcaccd012e | MATLAB | 4,682 | 110 | % findVelZeroXing.m
%
% Function to find zero crossings in velocity, while specifying a minimum
% number of samples spent between zero crossings.
% Finds zero crossings after removing not-moving times, which would
% otherwise confuse zero-crossing calls
% Specifies whether zero crossing is with velocity going negati... |
0581d0a4b3d95b9ac385d2ca20ef069e7abc82a41a85b42e5eb499f1fe180a43 | MATLAB | 4,683 | 151 | % plotAvgFictracVImg.m
%
% Function to plot output of moveCondPairData() as FicTrac param v. dF/F.
% Plots average across flies and/or individual flies. Plots data only from
% moving time points
%
% INPUTS:
% whichImg - which imaging data to plot ('diff', 'sum', 'right', 'left')
% whichFictrac - which FicTrac par... |
f5eabd6ba181483404c30c8558c9af9d4c0327e617073a75f7626786d184d641 | MATLAB | 4,684 | 145 | function [obj, overall]=confMatPlot(confMat, opt)
%confMatPlot: Display the confusion matrix
%
% Usage:
% confMatPlot(confMat)
% confMatPlot(confMat, opt)
%
% Description:
% confMatPlot(confMat) plots the confusion matrix of classification result.
% confMatPlot(confMat, opt) labels the class names along the confusi... |
89be8c0883a93e5d5aa23d98ea0f27790164e3ea372200778e7779f5133f53b2 | MATLAB | 4,685 | 157 | function [psd_out] = one_event_shuf_psd(src_spk_vec,stevt,endevt,psdopt)
% one_event_shuf_psd.m
win_len_msec = psdopt.win_len_msec;
psd_out.win_len_msec = win_len_msec;
assert(mod((endevt-stevt)*1000,win_len_msec) == 0,...
'this function assumes that mod(duration,win) = 0')
src_spk = toCol(src_spk_vec);
% histo... |
3034e1ba7b1d3c978a8ea267a74cdc88d88a7330054c8c989ca245ac79c4121a | MATLAB | 4,686 | 150 | % tickScreen.m
%
% $Id$
% usage: tickScreen
% by: justin gardner
% date: 12/10/04
% copyright: (c) 2006 Justin Gardner (GPL see mgl/COPYING)
% purpose: flip screen and update counter - for mgl
%
function [myscreen task] = tickScreen(myscreen,task)
%%%%%%%%%%%%%%%%%%%%%%%%%%%
% get back ti... |
bcf5dc18fc08dd835f49e58caac39cd672c143697cd37dd949248bc6b6796d9a | MATLAB | 4,687 | 141 | %--------------------------------------------
% Function onoffdiff
% Input: onewave - boolean matrix of size n_neurons x t_wave x 2 where
% onewave(i,t,1)=1 if neuron i is in upstate at time
% t and onewave(i,t,2)=1 if column i is in downstate at
% time t (note: there ... |
86175b07701d4eb9d2add2005b3d8d61a06654ac1b37b1eadfd872ee74d6c9cc | MATLAB | 4,689 | 108 | function CaptureFigVid(ViewZ, FileName,OptionZ)
% CaptureFigVid(ViewZ, FileName,OptionZ)
% Captures a video of the 3D plot in the current axis as it rotates based
% on ViewZ and saves it as 'FileName.mpg'. Option can be specified.
%
% ViewZ: N-rows with 2 columns, each row are the view angles in
% deg... |
270927ebc3ad86b0036e4ec27d938b19ba1234368df4a617514a66bf23325d1a | MATLAB | 4,691 | 142 | function [unwrappedPhase, PhaseLaplacian] = phase_unwrap_laplacian(dataPhase, Params, RefVox, zp, padsize)
% [unwrappedPhase, PhaseLaplacian] = phase_unwrap_laplacian(dataPhase, Params, RefVox, zp, padsize)
%================================
% HEADER
%================================
%
% Name: phase_unwrap... |
c7a66861a154ed18e862c2fcf19a2ada3226896069a435e557f9ef9bc8733895 | MATLAB | 4,691 | 103 | %% This script computes 6 parameters for current injection protocol (CC_inj)
% ==================================================
% Authors: Arash Samiee, Knut Kirmse
% last modification: 02/2023
% ==================================================
% How to use:
% (1) Specify parameters
% (2) Run the script
% (... |
d860e31cdd0b45bd4258c2ccd51cb4248f22b27a0a00371d728e0099c981958e | MATLAB | 4,691 | 79 | % matcfs32.m
% routines to access cfs files from Matlab 6.x, 7.x
% code switching originally by Mario Ringach
% by JG Colebatch v.1 Nov 2005 read only
% 12 Feb 2009 finished write routines.
% other mods required due to Matlab using double as standard
% see CFS Filing System guide from CED Ltd www.ced.co.uk
% 1.... |
a77c655596bd4670cb3773ce9e944c17a161372f07ebbf24eb85ab4135d7cf03 | MATLAB | 4,693 | 111 | function vars = PLOT_AlignedTraces(app, vars)
%% Align channels
vars = alignChans_APP(vars, vars.chosenShiftVal);
veltau = .01;
%% load data
loadAnalysisInfo_APP;
%% Prep Video
vid.pos_data_upsampled_aligned = cumtrapz(vid.vel_data_upsampled_aligned)./mag1.samplerate;
vid.pos_data_upsampled_aligned = vid.pos_data... |
07e7aaa83d80000e10433d722e8a21b0bd1f4ac307f44615ed2fc80230ab25ed | MATLAB | 4,696 | 117 | %% Paths and Parameters% set values and parameters
SUB = [1 2 3 4 5 6 7 8 9 10 11 12 13 14 15];
MASK = {'HG_LH','TPJ_LH','HG_RH','STS_RH'};
startTR = 30;
endTR = 270;
nTR = endTR-startTR+1;
% parameters to optimize:
% define interval lengths
interval_length = [10,20,30,40,60,80,120,150,180,210,240];
% load ... |
b726f8821eb526861f8425eee2ee7177cbd416abb51967b61b7dbaeb47a81011 | MATLAB | 4,702 | 109 | function design_mat = fact_des_ttest1(stud_dir, subj_file, MS_file, img_path, cov_names, stat_suff)
% _
% Create batch for factorial design one-sample t-test analysis
%
% stud_dir - study directory in data/analyses are located
% subj_file - an XLS file containing subject IDs and covariates
% MS_file ... |
d2a45a09a281898b7ff27a37d9bfd291ca28e8abab49b5e13a79fd1687e4e8ad | MATLAB | 4,703 | 111 | classdef ExternalLink < handle
properties
filename;
path;
end
methods
function obj = ExternalLink(filename, path)
obj.filename = filename;
obj.path = path;
end
function data = deref(obj)
data = cell(size(obj));
... |
9eb4a9a5bde8a6d22bc03704abb796bf6adb00ee17ac944e5ca6c8b63490a50d | MATLAB | 4,704 | 150 | % tickScreen.m
%
% $Id$
% usage: tickScreen
% by: justin gardner
% date: 12/10/04
% copyright: (c) 2006 Justin Gardner (GPL see mgl/COPYING)
% purpose: flip screen and update counter - for mgl
%
function [myscreen task] = tickScreen(myscreen,task)
%%%%%%%%%%%%%%%%%%%%%%%%%%%
% get back ti... |
78929ee25eae140aaa6e0576ecb07f31459e832e4a58a45bfb3f99ec1df265e0 | MATLAB | 4,708 | 151 | function My_dpca_plot_default(data, time, yspan, explVar, compNum, events, signif, marg)
% Modify this function to adjust how components are plotted.
%
% Parameters are as follows:
% data - data matrix, size(data,1)=1 because it's only one component
% time - time axis
% yspan - y-axis spab
% expl... |
84a98caab23b5ef85080ea2d261326cbe7ae26ad39e549a713153cb2312cd40d | MATLAB | 4,709 | 123 | function res = safetytest(frequency, duration, amplitudes, trials, waitperiod, pairs)
%function res = safetytest(frequency, duration, amplitudes, trials, waitperiod, npairs)
%SAFETYTEST automatic safety testing for DARPA stimulation tasks
% Takes the parameters for the desired safety testing and implements the
% ... |
6c179245f6d25c379e54683df4649f0b92d05ccd0ae278b81a0f3a4110264d55 | MATLAB | 4,712 | 129 | % getFictracFromDat.m
%
% Function to extract FicTrac data from .dat file output by FicTrac instead
% of from DAQ output
%
% INPUTS:
% datFilePath - full path to .dat file
% daqData - struct of data from experimental DAQ, processed by
% preprocessUserDaq()
% daqTime -
%
% OUTPUTS:
% fictrac - struct of... |
f9d9279bdc74995257cf887d702c72538848a9c17f569419f540ba988afd96c6 | MATLAB | 4,713 | 120 | % mglMetalCreateTexture.m
%
% usage: [tex, results] = mglMetalCreateTexture(im, [minMagFilter, mipFilter, addressMode])
% by: justin gardner
% date: 09/28/2021
% copyright: (c) 2021 Justin Gardner (GPL see mgl/COPYING)
% purpose: Private mglMetal function to send texture information
% ... |
c2a47942db39671de002e455275d923ea131a5db3a7f25b67f498cd20c0843d1 | MATLAB | 4,714 | 168 | %% Analyze simulation results
clear
restoredefaultpath
filePath = matlab.desktop.editor.getActiveFilename;
root0 = fileparts(filePath);
addpath(genpath(fullfile(root0,'lib')));
root = fullfile(root0,'data');
%% Karger model fitting
load(fullfile(root,'simulation_results.mat'));
tex_fit = zeros(3,3);
K0_fit = zeros(3... |
5ac8285f3fdefeba81d0d6403a3e0804a5ff6da57fdc0280b888db4224f98e44 | MATLAB | 4,715 | 169 | function [] = Fig07_AveTimeCourse_OptStim_Song
% Code for plotting the time courses of pulse and sine song in Fig. 7c.
% GT = 'pIP10_Chr';
GT = 'dPR1_Chr';
% GT = 'TN1_Chr';
% GT = 'pMP2_Chr';
switch GT
case 'pIP10_Chr'
Target = [3,4];
case 'dPR1_Chr'
Target = [7,8];
case 'TN1_Chr'
... |
551f84ff66f1f9f24a66dd43e2ea485f5a972c4f5150065faa8d125895d971f5 | MATLAB | 4,718 | 97 | function text = curlConfigText(cfg, micID, source, zipPath, connectTimeout, maxTime, nullDevice)
% Text of a curl -K config file that uploads the zip, as postZip does in-process
%
% function text = webupload.curlConfigText(cfg, micID, source, zipPath, ...
% conn... |
227c3c09965e53724396445968686614d10d697383193afd6db518c81b165e56 | MATLAB | 4,719 | 160 | %FIGURE3
%% LOAD DATA
base = 'Z:\Potter et al datasets\';
event_frame = 120;
%load('Y:\Christian\Processed Data\Event Analysis\standard_ds_onsets.mat')
base= '/Volumes/Runyan/Potter et al datasets/'
%% GET MEAN ACTIVITY
[pyr_mean_activity,som_mean_activity,pv_mean_activity,velo,acc] = get_mean_activity(base,ds_events,e... |
6e2fe25b735ea8a1d5cf9cc7b67491846be2e0db590ed6d763b071ed9ec1ea44 | MATLAB | 4,719 | 133 | %% to restart everything
clear variables
close all;
clc;
cond = 'dd';
%% Load necessary code
% paths to store the plots in
basepath='.../MatlabCode';
cd(basepath);
% path where the variables/output are stored
savepath = '.../data/processed/EEG';
addpath('.../data/processed/EEG');
% load EEGlab
addpath('.../Matlab-... |
d0bf2edf4504dea53525738e83ec77be736139e36aededcdd912e03770cb0639 | MATLAB | 4,722 | 154 | function [trainedClassifier, validationAccuracy,rel_score] = trainClassifier(trainingData, response,class_names,class_type,varargin)
% ** varargin relates only to using decay
% Returns a trained classifier and its accuracy. This code recreates the
% classification model trained in Classification Learner app. Use the... |
6afe3e2c24fff7780c18f7180ab7882942d0456b9e93e33b32cda84d6399099e | MATLAB | 4,727 | 111 | function [ parsing_status, text ] = loadFile( obj, file_pathname, filename )
% Parse data from json file.
%
% Syntax:
% [ parsing_status, text ] = LOADFILE(obj, file_pathname, filename);
%
% Input parameters:
% * obj - object containg data
% * file_pathname
% * filename
%
% Output parameters:
% status
% ... |
f4ce96c1461dc0a3c9d9503c0dbf9abea8823b08ce6a72b89fe9f5b89e2d6559 | MATLAB | 4,729 | 103 | % mglReadCommandResults: Read a results struct for Mgl Metal commands.
%
% usage: results = mglReadCommandResults(socketInfo, ackTime, setupTime, commandCount)
% by: Benjamin Heasly
% date: 01/19/2024
% copyright: (c) 2006 Justin Gardner, Jonas Larsson (GPL see mgl/COPYING)
% purpose: Read a resu... |
4ed676b0fd1f52fdfa6855e0df59415e322bccb6520c817154887bdba723aba1 | MATLAB | 4,730 | 131 | classdef TwoPhotonSeries < types.core.ImageSeries & types.untyped.GroupClass
% TWOPHOTONSERIES Image stack recorded over time from 2-photon microscope.
% OPTIONAL PROPERTIES
properties
field_of_view; % (single) Width, height and depth of image, or imaged area, in meters.
imaging_plane; % ImagingPlane
pm... |
6c1651d1af5f6784372ca4faed2cba2e3b9cdad643c3e7d8540844748059be63 | MATLAB | 4,731 | 133 | % dsFiltFictrac.m
%
% Function that downsamples and smooths fictrac data and returns new fwd,
% slide, and yaw postion and velocity, x and y position, total speed, and
% yaw speed, as well as t and dropInd in fictrac struct
%
% INPUT:
% trialPath - full path to trial folder that contains fictracDat.mat
% fictrac ... |
9c79d3a5b1233df291761e9e455510658d14fedf40cba9f6f844a77f59072c81 | MATLAB | 4,734 | 112 | % mglTestSocket.m
%
% $Id: mglTestSocket.m
% usage: mglTestSocket(socketFile='/tmp/test.socket')
% by: Benjamin Heasly
% date: 03/02/2022
% copyright: (c) 2006 Justin Gardner, Jonas Larsson (GPL see mgl/COPYING)
% purpose: Test socket connectivity, read, write, data integrity.
% usage... |
c457d7e8f6d8e9164489f87821f3c86db3f896ef02727b3e056ef5dc7eade031 | MATLAB | 4,735 | 118 | %% Fig. 1
% Run config.m
% Process data for each animal
[psth, response, visI] = processAnimalData(cell_activity_allday, stim_type_allday, trials, nanimals, nstim_type, win, threshold, ngratings);
%% Fig. 1c - Plotting
% Define plot limits
Lim3 = -0.5;
Lim4 = 2;
% Initialize containers
plot_block1 = cell(1, ngrat... |
2015762abfe7424b048e758b6cd18c8c5d9e3f3532ae83c347d2c0fdecc3a58d | MATLAB | 4,736 | 113 | %%% demo of the full MIN1PIPE %%%
clear
warning off
gcp;
min1pipe_init;
addpath(genpath('../ANE'))
%% Set data and folder
patch_dims = [160,160];
list_Exp_ID={'Mouse_1K', 'Mouse_2K', 'Mouse_3K', 'Mouse_4K', ...
'Mouse_1M', 'Mouse_2M', 'Mouse_3M', 'Mouse_4M'};
num_Exp = length(list_Exp_ID);
rate_hz = 20; ... |
72614db656f897e2db5d50fb3f20ea489fbb5127f67626edce40b1929c85fab7 | MATLAB | 4,748 | 150 |
%# Compute chebyshev type II filter order and cutoff for the desired response
%# characteristics. Rp is the allowable decibels of ripple in the pass
%# band. Rs is the minimum attenuation in the stop band.
%#
%# [n, Wc] = cheb2ord(Wp, Ws, Rp, Rs)
%# Low pass (Wp<Ws) or high pass (Wp>Ws) filter design. Wp is the... |
7bb8ed1226713d9325a7bdc1a423156b6752a949072dad5f386f708010129b2a | MATLAB | 4,751 | 111 | function object_task_correlations_for_4hab_0test(pipe)
% Get the t-files that are present for both day 1 and day 2
if pipe.Experiment.getNumSessions() == 1
session = pipe.Experiment.getSession(1);
if ~strcmpi(session.getName(), 'hab')
error('This object task consecutive trials experi... |
aa485f7b7482008545c489b5f3da6345a38637b7ea54eab28fe9e24d4a3e22cf | MATLAB | 4,762 | 98 | %% plot task parameters
% remy, gus, bernard, and fievel are neurofeedback animals; jaq, roquefort, despereaux, and montague are control (no feedback) animals
% (no filterframework required, just task struct)
animals = {'remy','gus','bernard','fievel'}; %,'jaq','roquefort','despereaux','montague'
animcol = [123 159... |
8faa4d64691b3ac46765d470deb888d2277b636715cb9b71f4f8b79958d49843 | MATLAB | 4,765 | 112 | % DERIVATIVE5 - 5-Tap 1st and 2nd discrete derivatives
%
% This function computes 1st and 2nd derivatives of an image using the 5-tap
% coefficients given by Farid and Simoncelli. The results are significantly
% more accurate than MATLAB's GRADIENT function on edges that are at angles
% other than vertical or horizont... |
2e349d8df5eb611f61b7621d0d66ef218743a1b9b74d4520ff73493c3ef66b54 | MATLAB | 4,767 | 149 | % logAnalysisStatus.m
%
% Function that reports on status of manual portions of analysis: selecting
% dropped frames for FicTrac, getting filtered FicTrac signal, setting
% threshold for ephys spike calls, loading in .trk data, leg step analysis
% Outputs as spreadsheet, each row is pData file.
% Select pData files t... |
febb79c996cdf661da8918d4e0bee42a8e5483bc7832800ac57522f805cab972 | MATLAB | 4,770 | 163 | %{
Cluster reads by spatial density.
Please note that the cluster labels in the published datatable may vary
slightly compared to the output of this script, as those labels were
assigned using this script on an earlier and slighly less curated
version of the datatable.
%}
%% Load the data
data = readtable('Table_S... |
27c75b3d708ae691d1341a64632a281304397275b558fd34747b2f36ce40f799 | MATLAB | 4,776 | 169 | function [S_out] = load_spk_evt_data(Recordings, datadir, inds, rt_good, mt_good)
%load_spk_evt_data.m
% reflects code contributions from RST, DK, KC
t_fields = {'starttime' 'endtime' 'rewardon' 'mvt_onset' ...
'mvt_end' 'return_onset' 'cue_onset' 'return_end' 'rewardoff'};
chan = Recordings.Chan(inds(1));
sort = Re... |
0497d6717a3cad30a843caf6a17927d7e1c7802a50839e5b4fb99d6138079364 | MATLAB | 4,780 | 150 | function embedding_dimensions_all_sessions(Sessions,Area,threshold,Ndir,Nbins,t_from,t_upto,edges_dur_bin,session_N,do_plot,plot_supp)
%% embedding_dimensions_all_sessions calculate the number of embedding dimensions for all recordings denoted in Sessions and Area
%
% INPUTS
%
% Sessions: cell array containing the... |
73d259596a8845ade3cffb03c63c11035a62c8518fe6ae6fb71c8c8a3cc8cb62 | MATLAB | 4,781 | 149 | function [outcomes] = get_pop_sparseness(ds_events,ex_thresh,time_bin)
%%
% Gives sparseness based on period of time after
% OUTPUT:
% Outcomes:
% -
%%
for d=1:12
cur_onsets=ds_events(d).onsets;
[rand_resp,pv_resp,som_resp,som_onsets,pv_onsets,ex_onsets,ex_resp,ex_type] = extract_onsets(cur_onsets,ds_ev... |
b0023485b45b71f009f363c0c53452f4e7162791832693562b9cdedca7b18b04 | MATLAB | 4,783 | 125 | %function stsum(x,y,STS,elec,unit,cc);
function STS = sts2d(x,y,y2,STS);
% updates the STS global struct: .sts[odd/even/shuf,:], array 2x:; .Ns [2,1]
% computes STS for shuffled spike times, for odd only - .stsShuf
% input: x holds spike frames, y holds the signal
% bef_s and aft_s units are s
%
%sta, the STA fu... |
afa1e9e2f315dc06c2584a2c3cc2ea35d5c0295d8e813e9d1cc6e61db602bbc9 | MATLAB | 4,788 | 166 | %{
For the specified k, collect the dFC FC strength and variability across all
states and within states from all participants. Generate averaged 2D matrices from
vectorized forms.
Output:
dFC_strvar.h5 Contains dFC FC strength and variability across all states and within states from all participants and average 2D mat... |
ddd13699c0050105085d37d97aff9d9aca1a506744edd75527b521c4d80a63ba | MATLAB | 4,790 | 124 | % callSwingStanceFrames_v2.m
%
% Function to call swing phase and stance phase for each leg on each video
% frame.
% If the leg and ball move in the same direction, leg is in stance. If the
% leg and the ball move in opposite directions, leg is in swing. So,
% comparing leg velocity to FicTrac fwdVel, same sign is ... |
f2403ab95a47b9fc65b019c5f82ca1d736b58c994a4a1fc56feb5b6931ecc41d | MATLAB | 4,790 | 124 | % callSwingStanceFrames_v3.m
%
% Function to call swing phase and stance phase for each leg on each video
% frame.
% If the leg and ball move in the same direction, leg is in stance. If the
% leg and the ball move in opposite directions, leg is in swing. So,
% comparing leg velocity to FicTrac fwdVel, same sign is ... |
07a5f79d14877cac2823e42973dd18f2a66c85019d640cd8a99e074161cab4ee | MATLAB | 4,796 | 166 | function Dist = sc_pdist2( X, Y, metric )
% Calculates the pairwise distance between sets of vectors.
%
% Let X be an D-by-M matrix representing m points in D-dimensional space
% and Y be an D-by-N matrix representing another set of points in the same
% space. This function computes the M-by-N distance matrix Dist wher... |
03cc3629dce9179ca88982693da2999778b9b5a37a81e9d36bef2baaf6ac0b99 | MATLAB | 4,797 | 138 | % extractStepsFromPData.m
%
% Function that computes leg step parameters from raw leg tracking data
% (output of loadFreeWalkTrk2PData())
% User selects one or more pData files through GUI
% The pData file must contain the moveNotMove struct (output of
% extractMoveNotMoveFromPData() and the legTrack struct
% (out... |
d927a780c8d4b578b432137ccabceb6a35997c740721538ee42f59d09b8b7dc6 | MATLAB | 4,798 | 142 | function [D,CI] = compare_correlations(varargin)
% Percentile bootstrap to compare correlation coef.
%
% FORMAT: [D,CI] = compare_correlations(data1,data2,method,type)
%
% INPUT: data1 data from gp 1 - matrix n1*2
% data2 data from gp 2 - matrix n2*2
% method type of correlation to use 'Pearson' 'Spearma... |
e64d3c061ff22e97fb341f31c3e7c484a6a21f61a4f957ceddc9fdd9fd7ace95 | MATLAB | 4,798 | 101 | function fH = makeSupplFigure9_STRetParams_RegressionSlopes_v_Params( ...
allDS,allLMMResults,allLMMResults_model,cmapModels,roisToPlot,cmapROIs,...
temporalModel, spatialModel, subjnrs, saveFigs, saveFigDir)
%% Function to reproduce supplementary figure 9:
% Note that Pearson's correlation values may be slight... |
7bff04eac060828f8fdb596710ba67c2cfeff8a07816cdce716e8042c2d770fb | MATLAB | 4,800 | 170 | %figS3_FA_diffs_pbase_vary_synthetic.m
%%
close all;
clc;
warning('on','all')
%%
scriptdirs = {pwd; '..\..\plot'; '..\..\analyze'; '..\..\helper_functions'};
addpath(scriptdirs{:})
datadir = pwd;
ssfile = 'subsample1000_pbase_vary.mat';
sspath = fullfile(datadir,ssfile);
%%
fprintf('loading %s\n',sspath)
load(ssp... |
a66516ee2831fcae2204a071d6fca9f3a1dd3cecaccb072f12e054d42dc8ca8b | MATLAB | 4,801 | 115 | % preprocessFicTrac.m
%
% Function for preprocessing raw FicTrac voltage data acquired on the user
% DAQ. Takes 0-10V signal of heading, intX, and
% intY and returns angular position and velocity for each dimension. For x
% and y, also returns position and velocity in distance units (mm). Raw
% voltage signal is lo... |
8c14c77f3a5d1419988289894cafebb1bc358641ab29114fe98e05560b1d915a | MATLAB | 4,806 | 137 | classdef ElectrodeGroup < types.core.NWBContainer & types.untyped.GroupClass
% ELECTRODEGROUP A physical grouping of electrodes, e.g. a shank of an array.
% OPTIONAL PROPERTIES
properties
description; % (char) Description of this electrode group.
device; % Device
location; % (char) Location of electrod... |
8e6f405c0af3ba48c242dc91a89812bb17c6d62aef9d9c0b3e53136a222f2417 | MATLAB | 4,806 | 133 | % measurePipetteResistance.m
%
% Function to calculate pipette or seal resistance by acquiring voltage
% and current data when seal test is on.
% Will run for duration set by settings.sealTestDur
% Saves actual recordings in a folder in the pwd called preExptTrials
%
% INPUTS:
% settings - struct of ephys setup sett... |
517a9e33cf1ae063af0fffcabd450f47c82a74effd1e4d40e92ec86b471c2149 | MATLAB | 4,808 | 170 | %figS2_HR_diffs_pbase_vary_synthetic.m
%%
clear all;
close all;
clc;
warning('on','all')
%%
scriptdirs = {pwd; '..\..\plot'; '..\..\analyze'; '..\..\helper_functions'};
addpath(scriptdirs{:})
datadir = pwd;
ssfile = 'subsample1000_pbase_vary.mat';
sspath = fullfile(datadir,ssfile);
%%
fprintf('loading %s\n',ssp... |
3e611e403c428409cd0b2d8c96dd596d74e75a2b210eada1ae675d26f85856f5 | MATLAB | 4,813 | 129 | % evenMultiStepIInj.m
%
% Current Injection Function. Injects square current steps of user
% specified number of amplitudes between max and min user specified
% values. Has option to randomize amplitudes or not. User specified step
% duration and time between steps. User specified space amplitude.
% Returns vector... |
5e6b0005ad39c90a16289ebd1a7d14e23764035196b8968490b4e30f58bed333 | MATLAB | 4,814 | 119 | function plotAutoCorrVarChronic( obj, varargin )
% Plot autocorrelation and autocovariance for chronic LFP recordings.
%
% Syntax:
% PLOTAUTOCORRVAR( obj, ax );
%
% Input parameters:
% * obj - object containg data
% * ax (optional) - axis where you want to plot
%
% Example:
% obj.PlotAutoCorrVar();
% PLOTC... |
c901c7853f8f10d15bc7bbbefecfe83d637fa429294f2ed8a898eb4231bb15aa | MATLAB | 4,814 | 127 | % measureAccessResistance.m
%
% Function that acquires a trial of voltage clamp data with the seal test
% on and uses it to calculate the access resistance, input resistance,
% and the holding current.
% Saves the recording in the present working directory
%
% INPUT:
% settings - struct of ephys setup settings, fr... |
6bce8195a1853cebc4b7fe81f8da30b3e53fb21b62382f98137892bebd14ee3d | MATLAB | 4,817 | 155 | % plotOptomotorOptoFicTrac_allFlies.m
%
% Function that takes outputs from extractOptomotorFicTracOptoCond_fly()
% and plots the average optomotor response over time
% Plots mean across flies
% Has option to plot mean for each fly
% Select one duration, one FicTrac parameter, one or more NDs
% If more than 1 ND, diffe... |
b5f170b412b0c58f7fdca3aedb7a5ee9fc50d6fd8e31b25612a439339f37a753 | MATLAB | 4,818 | 164 | function [] = ExtDataFig08_AveTimeCourse_OptStim_Song
% Code for plotting the time course of and the proportions of pulse and sine song in Extended Data Fig. 8a,d.
GT = 'pIP10'; % Extended Data Fig. 8a
% GT = 'pMP2'; % Extended Data Fig. 8d
switch GT
case 'pIP10'
CellFlagNonTrans = [1,1,1,1,1,1,1,1,1];
... |
17976595cb5eb9bf38c5bbd7ee829da285332618da0f3881b601f0849f5a59d8 | MATLAB | 4,821 | 107 | clc, clear
close all
%% this file is used to generate NAOMi1p data
% last update: 9/28/2021. YZ
%% add path
installNAOMi1p
%% load predifined data
RUSH_ai148d_config
%% RUSH 148d config
FOV_sz = 600;% FOV 600, mm
nt = 1000; % frames
fn = 10; % 10 Hz
pavg = 1; %mW per mm2
%% parser
vol_params.vol_sz(1) = FOV_sz;... |
4a4723c4d6df5235b86d97318eb1465978404e5b95a26f05f0f76e63c071ebf0 | MATLAB | 4,827 | 165 | % plotSpikerateAutocorr.m
%
% Function to plot autocorrelation of spike rate (output of
% getSpikerateAutocorr_cell()). Plots the autocorrelation itself as well
% as the FWHM, across conditions. Plots one line/pt per cell and mean +/-
% SEM across cells
% Select output files through GUI
%
% INPUTS:
% datDir - fold... |
443b4f98f135913ac9a72b1dd06001a00b8e039b9be33b2f4d1b38b16a39bd04 | MATLAB | 4,829 | 114 | %%% demo of the full MIN1PIPE %%%
clear
warning off
gcp;
min1pipe_init;
addpath(genpath('../ANE'))
%% Set data and folder
patch_dims = [160,160];
list_Exp_ID={'Mouse_1K', 'Mouse_2K', 'Mouse_3K', 'Mouse_4K', ...
'Mouse_1M', 'Mouse_2M', 'Mouse_3M', 'Mouse_4M'};
num_Exp = length(list_Exp_ID);
rate_hz = 20; ... |
b0cf530903cb51045d1ae24b62bb01ca7963ededaf326fda70b6766d9fceed19 | MATLAB | 4,829 | 146 | function getRobustDKImaps(pathIn,pathScheme,pathMask,folderOut,Basename,bthresh,flagB0,fWMTI)
% Fit and get DKI parameter maps using the RobustDKI method
%
% pathIn: path to dwi (.nii) file
% pathScheme: path to protocol (.txt) file (MRtrix style)
% pathMask: path to mask (.nii) file
% folderOut: output directory
... |
43ba058d10c2f08cae7a731568eda8e2ed978feaa66d270bcf7c8cb9064cb682 | MATLAB | 4,832 | 185 | function [] = ExtDataFig08_AveTimeCourseSongTrans()
% Code for plotting calcium signals and song probabilities during song type transitions in Extended Data Fig. 8h,k.
GT = 'vPR9NP_SS1'; % Extended Data Fig. 8h
% GT = 'vPR9NP_SS3'; % Extended Data Fig. 8k
selpath = ['../Data/Summary_',GT,'/'];
load([selpath,'Transiti... |
15b9289778b2b0e211a99b2a8fdf208788b48748e4f9b94bacfa4a1c286f33e0 | MATLAB | 4,833 | 122 | function f = showInfoWindow(msg,wtitle)
%
% SHOWINFOWINDOW creates a small dialog window which displays a user-defined message. It
% is quite like MATLAB's msgbox but without an OK button. Although msgbox could be used
% for the simple display of a message that informs the user about a process being
% performed ... |
dc0445a52db18490446e8d8ed1a6d2a31d65b0596d9eb22df2bf002dded51361 | MATLAB | 4,836 | 137 | % MANC_DN_projAnalysis.m
%
% Quick script to read in MANC_legDNs.csv and classify leg neuromere
% projecting DNs
synThresh = 0;
filePath = '/Users/hyang/Dropbox (Personal)/Wilson Lab/EM reconstruction/VNC/MANC_legDNs.csv';
outFilePath = '/Users/hyang/Dropbox (Personal)/Wilson Lab/EM reconstruction/VNC/MANC_legDNs_ca... |
1f12a552d10f4bb6587871d824e63936736c25a39f9127a5d70f2313d11cce30 | MATLAB | 4,838 | 128 | % spacedMultiRampVInj.m
%
% Voltage Injection Function for visual panels.
% Delivers linear voltage ramp(s) between user specified values for user
% specified duration(s). Ramps are separated by constant voltage for user
% specified duration. Multiple ramps of different parameters are possible.
% Order is randomiz... |
19a370473e7215b42be2a1a319bd62b9a6d33e88b37b85aed556816f7a5728d6 | MATLAB | 4,839 | 152 | % plotOptoFicTracChangePos_allFlies.m
%
% Function that plots effect of opto stim on FicTrac position
% parameters. Specifically, for each fly, plots the average across trials
% of the difference in cumulative position/angle between a start time
% point and an end time point relative to the opto stim start. For
% ... |
348514572e2eb09bb4ccb2a93808583af8f266dc7b23b755993735a35e83e933 | MATLAB | 4,844 | 126 | % Marc Normandin, Muzzio Lab, Psychological & Brain Sciences, University of Iowa, 2024
% This code makes Figures S2B and S2C, which show histograms of occupancy.
close all
clear all
clc
% Paths
run('../load_figure_config.m')
INPUT_FOLDER = CHENGS_TASK_2C_FIGURES_CONFIG.DATA_FOLDER;
OUTPUT_FOLDER = CHENGS_TASK_2C_FIGUR... |
fbf141b69c3963b2c2e420159b35ff8692c2d5991e4ea89aaacc80f52418da83 | MATLAB | 4,845 | 180 | function [rate_mch_events,rate_tdt_events,rate_ex_events,durations]= supplemental_report_events (ds_events,ex_thresh,ex_type)
%% UNPACK STRUCTURE
mchw=[];
mchws=[];
mchwe=[];
mchp=[];
mcho=[];
tdtw=[];
tdtws=[];
tdtwe=[];
tdtp=[];
tdto=[];
exw=[];
exws=[];
exwe=[];
exp=[];
exo=[];
n_mch_events=[];
n_tdt_events... |
8d987440b92328acb47de6bc61f715b0d3d065c9c7aff1ebcdcbd54c442f9981 | MATLAB | 4,848 | 137 | % This script computes tissue mesh intersections with the YZ plane
% (saggital plane) located at X=0 or elsewhere, displays and saves the
% result
%
% Copyright SNM 2012-2018
% The Athinoula A. Martinos Center for Biomedical Imaging, Massachusetts General
% Hospital & ECE Dept., Worcester Polytechnic ... |
b4f1b026a19cee9cad92fa93f81aae996f9ced4a475456818bb888695ae23a46 | MATLAB | 4,849 | 115 | %%% demo of the full MIN1PIPE %%%
clear
warning off
gcp;
min1pipe_init;
addpath(genpath('../ANE'))
%% Set data and folder
patch_dims = [50,50];
list_Exp_ID = { 'c25_59_228','c27_12_326','c28_83_210',...
'c25_163_267','c27_114_176','c28_161_149',...
'c25_123_348','c27_122_121','c28_163_... |
f1bc01d41beb5c5c5e1ecacbeb344547945f89dbd06ff1c24e19787835ea38d0 | MATLAB | 4,850 | 137 | % This script computes tissue mesh intersections with the YZ plane
% (saggital plane) located at X=0 or elsewhere, displays and saves the
% result
%
% Copyright SNM 2012-2018
% The Athinoula A. Martinos Center for Biomedical Imaging, Massachusetts General
% Hospital & ECE Dept., Worcester Polytechnic ... |
2bf0283301036d7d88ca6865c92c5783eb2d1cde176cc0f1f7bb1e30b4f63ad2 | MATLAB | 4,851 | 137 | % This script computes tissue mesh intersections with the YZ plane
% (saggital plane) located at X=0 or elsewhere, displays and saves the
% result
%
% Copyright SNM 2012-2018
% The Athinoula A. Martinos Center for Biomedical Imaging, Massachusetts General
% Hospital & ECE Dept., Worcester Polytechnic ... |
5c22f5718e5fdb9e07d1fc552941b38163ca073fdc3ce17f2ec24da5a8393790 | MATLAB | 4,851 | 86 | function mltp_compute_bfo_90_ac_per_cell(obj, session)
% Allow the function to run so that other functions do not break,
% but give a warning.
if session.getNumTrialsToUse() < 2
warning('This function requires the session to have more than 1 trial.');
end
% We have to use the shrunk dat... |
ae77bb756f10701282d78d0557ad047baee8eb0a3629fa60468cf675f6a9362c | MATLAB | 4,851 | 139 | function decoding_movement_duration_all_sessions(Sessions,Areas,threshold,Ndir,Nbins)
%% decoding_movement_duration_all_sessions predicts the duration of the neural trajectories of each recordings based on their relative speed to a reference trajectory
%
% INPUTS
%
% Sessions: cell array containing the names of th... |
2b08735f97d1afc93d702c11c27e8f0203c347038dc8ed4aa2f34e41abea24c1 | MATLAB | 4,852 | 124 | function [] = concatParfilesUniqueRuns(projectDir, subjnr, sesNr)
% script to concatenate unique runs in pilot 3.
% subjnr = 6; %9;
% sesNr = 1;
% projectDir = '/oak/stanford/groups/kalanit/biac2/kgs/projects/spatiotemporal/';
% projectDir = '/share/kalanit/biac2/kgs/projects/simseqPRF/';
cd(fullfile(projec... |
cac71bcbaea5d993b8bafffcf61566fc64fd84f92b73d88970a4cac322815006 | MATLAB | 4,852 | 116 | classdef NCNPERCEPT_FILE < handle
% Object with properties and methods to analyse PerceptPC json file at NCN lab
%
% Available at: https://github.com/NCN-Lab/DBScope
% For referencing, please use: Andreia M. Oliveira, Eduardo Carvalho, Beatriz Barros, Carolina Soares, Manuel Ferreira-Pinto, Rui Vaz, Pau... |
afccf940703c4895677f856370b9006a2207335a4cf9102a56195f984f9cf512 | MATLAB | 4,853 | 157 | function [] = ExtDataFig10_Connectivity_Proportions()
% Code for plotting the input/output cell types in Extended Data Fig. 10c,e.
%% parameters
pIP10 = [13417,13038]; % pIP10 (L, R)
pMP2 = [11977,11987];
dPR1 = [10267,10300]; % dPR1
TN1A = [15521,16465,15148,12883,16207,...
16113,14581,14810,15387,17640,...
1... |
ba662c09ace84cad0a6b79d80369207613aa266e5678ef11d6ede6b9148dfe91 | MATLAB | 4,853 | 144 | function [phase_local, background, mask_eval] = VSHARP2D_k(GREPhaseSE, BrainMask, radiusArray, SMV_thres, Params, handles)
% [phase_local, background, mask_eval] = VSHARP2D_k(GREPhaseSE, BrainMask, radiusArray, SMV_thres, Params, handles)
% Author: Xu Li
% Affiliation: Radiology @ JHU
% Email address: xuli@mri.jhu.edu
... |
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