sha256 stringlengths 64 64 | language stringclasses 28
values | size int32 1 491k | lines int32 1 23.2k | content stringlengths 1 200k |
|---|---|---|---|---|
67e19cdc017cc15e1d34fb822cd048b7fa24817a706c33ef5120fefb410ab136 | C++ | 5,922 | 177 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
18984cb62ab512c1caa3663dcbdba11f98027200ecee1f1a978702614371ffab | C++ | 5,939 | 187 | /*
* Copyright (C) 2010 Regents of the University of Michigan
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later v... |
2a9a99b49e39d2e3deb416f0378a9d8e8cefc7cd4e1969799d8409383b83a94f | C++ | 5,950 | 170 | /*
*! @title Class to handle hardware monitoring
*! @file HwMonitoring.cpp
*! @author Romain Beaubois
*! @date 02 Nov 2022
*! @copyright
*! SPDX-FileCopyrightText: © 2022 Romain Beaubois <refbeaubois@yahoo.com>
*! SPDX-License-Identifier: GPL-3.0-or-later
*!
*! @brief
*!
*! @details
*!... |
c9bc66918fd87342480b0c117746ba39b65d5151b24eb69340e89c4d9aca6890 | C++ | 5,969 | 133 | #include "CutoutFns.h"
#include "Throw.h"
#include "Variant.h"
namespace rayx {
// checks whether the point (x, z) is within the cutout.
RAYX_FN_ACC
bool RAYX_API inCutout(Cutout cutout, double x, double z) {
return cutout.visit([&]<typename T>(const T& cutout_type) {
if constexpr (std::is_same_v<T, Cuto... |
6f76b75dc93d2aed83db185cd7564e0de39c9d70c4c1b7fb6e412a271eb388a4 | C++ | 5,975 | 211 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
b54277c8354410ff21fd0cf359078369d8070cd734d72d87c2808265af3d435f | C++ | 6,008 | 233 | #include "../src/meshoptimizer.h"
#include <vector>
#include <math.h>
#include <stdio.h>
#include <stdlib.h>
#include <string.h>
#ifdef _WIN32
#include <fcntl.h>
#include <io.h>
#endif
size_t measure(const char* cmd, const std::vector<unsigned char>& data)
{
FILE* file = fopen("/tmp/codectest.in", "wb");
if (!fil... |
a51115611b86f05a27db9363e89707c68b311bb6df34b422a077be869d541edf | C++ | 6,021 | 202 | /*
#################################################################################
#
# STEPS - STochastic Engine for Pathway Simulation
# Copyright (C) 2007-2026 Okinawa Institute of Science and Technology, Japan.
# Copyright (C) 2003-2006 University of Antwerp, Belgium.
#
# See the file AUTHORS for deta... |
a451720b4d66c9af152bcdc0f3d8af9fcc3febc8b81446cc1997e132ce81693e | C++ | 6,030 | 155 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
ecea98aa5522ec65cd8a6db5c6eb01a31fd568fe00fdb6f61c554da4f5093a72 | C++ | 6,032 | 229 | #include "util/flat_multimap.hpp"
#include <catch2/catch_approx.hpp>
#include <catch2/catch_template_test_macros.hpp>
using namespace Catch::literals; // NOLINT
#include <catch2/matchers/catch_matchers_floating_point.hpp>
using steps::fmm_ab2c_padding;
using steps::fmm_stl;
template <int Mask>
struct Policy {
... |
0e174b4601f80c3e1829ae0709a131ca2f2f795ef1a86254e31c72ba36f85307 | C++ | 6,033 | 214 | /*
* Copyright (C) 2010 Regents of the University of Michigan
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later v... |
290bbb23b5c91b790865851c872565b8ddf8a0d1a380f579d14368dff5519ddb | C++ | 6,037 | 202 | /*
#################################################################################
#
# STEPS - STochastic Engine for Pathway Simulation
# Copyright (C) 2007-2023 Okinawa Institute of Science and Technology, Japan.
# Copyright (C) 2003-2006 University of Antwerp, Belgium.
#
# See the file AUTHORS for ... |
171a1c86df332d3e1c3e7df87f9704afaa853dfb5df229ebd09f10941aa31d9a | C++ | 6,038 | 181 | /*
#################################################################################
#
# STEPS - STochastic Engine for Pathway Simulation
# Copyright (C) 2007-2023 Okinawa Institute of Science and Technology, Japan.
# Copyright (C) 2003-2006 University of Antwerp, Belgium.
#
# See the file AUTHORS for ... |
00e192a308d100bc104bb01fa2aeeeb44611d390920913cb86eaea0c21d5d4d4 | C++ | 6,054 | 226 | /*
* Copyright (C) 2013 Regents of the University of Michigan
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later v... |
88773f0284e71d7c9e898ba81aafe0abe1cd0a2eb067a00519fc4741e877a0a7 | C++ | 6,061 | 199 | /*
#################################################################################
#
# STEPS - STochastic Engine for Pathway Simulation
# Copyright (C) 2007-2026 Okinawa Institute of Science and Technology, Japan.
# Copyright (C) 2003-2006 University of Antwerp, Belgium.
#
# See the file AUTHORS for deta... |
a7f90cc4f613bca9ab26bb8308f4d40312d4f23b19932ca2e2d43c8b617c2bee | C++ | 6,064 | 171 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
2bae144511ea6db3542f8646ceb966ee510990527e64f7d91cb77770c3cb2795 | C++ | 6,077 | 199 | /*
#################################################################################
#
# STEPS - STochastic Engine for Pathway Simulation
# Copyright (C) 2007-2023 Okinawa Institute of Science and Technology, Japan.
# Copyright (C) 2003-2006 University of Antwerp, Belgium.
#
# See the file AUTHORS for ... |
7fbd5bbcfce58c02897c5919a5856fe44a9b7207cdb315fe03da3564f5ff6449 | C++ | 6,082 | 215 | /****************************************************************************
**
** Copyright (c) 2006-2015 C.B. Barber. All rights reserved.
** $Id: //main/2015/qhull/src/qhulltest/RboxPoints_test.cpp#2 $$Change: 2062 $
** $DateTime: 2016/01/17 13:13:18 $$Author: bbarber $
**
******************************************... |
fd9981717a0470b52723bb42bf4452f6b1b74e33bf1ea11f5614d10fda7c5d27 | C++ | 6,085 | 201 | /*
#################################################################################
#
# STEPS - STochastic Engine for Pathway Simulation
# Copyright (C) 2007-2023 Okinawa Institute of Science and Technology, Japan.
# Copyright (C) 2003-2006 University of Antwerp, Belgium.
#
# See the file AUTHORS for ... |
674b0c0e71c776d269d9fae8cf39a70db22b55e334343f7bff11fc77114b52db | C++ | 6,150 | 227 | /*
* Copyright (C) 2010 Regents of the University of Michigan
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later v... |
9c6f8bad810a2118854c7918fa769b1b068c1866e6fc7912fe0c6752110987ab | C++ | 6,157 | 318 | // A class of nonlinear filters using median, trimmed mean, and weighted median filters
#include<stdio.h>
#include <string.h>
#include <fstream>
#include <iostream>
using namespace std;
#include "list.h"
#include "nonlinear_filter.h"
////////////////////////////////////////////////////////////////////////... |
5ef8ac92fcf494fd9357c5dc881e2e7ac8ecad57a1745daf98e48322bb05422e | C++ | 6,172 | 112 | #include "Trace.h"
#include "Behave.h"
#include "Collision.h"
#include "RecordEvent.h"
#include "Utils.h"
namespace rayx {
#define assertObjectIdInBounds(object_id, numObjects) \
_debug_assert(0 <= object_id && object_id < numObjects, "error: ray object id '%d' is out of bounds [0, %d)", object_id, numObjects);
... |
1274cd502fd40d03fbb98d88fc3569eb7a5ee1b401548e0a991299a836500d6b | C++ | 6,207 | 228 | // ***************************************************************************
// SamHeader.cpp (c) 2010 Derek Barnett
// Marth Lab, Department of Biology, Boston College
// ---------------------------------------------------------------------------
// Last modified: 25 October 2011 (DB)
// ----------------------------... |
189e21f2ec262229d3d2dc4f75b07995c602358d21c71aa717021b3ac8d20aac | C++ | 6,214 | 132 | /*
*! @title Software configuration
*! @file SwConfigParser.cpp
*! @author Romain Beaubois
*! @date 27 Apr 2023
*! @copyright
*! SPDX-FileCopyrightText: © 2023 Romain Beaubois <refbeaubois@yahoo.com>
*! SPDX-License-Identifier: GPL-3.0-or-later
*!
*! @brief
*!
*! @details
*! > **27 Apr 2023** : fi... |
2700ebd42933cb2555cab1075f6586833fbea03c3934c9a920c88826c821b2d6 | C++ | 6,218 | 207 | #include "DeviceConfig.h"
#include <algorithm>
#include <alpaka/alpaka.hpp>
#include <ranges>
#include <sstream>
#include "Debug/Debug.h"
#include "Debug/Instrumentor.h"
namespace {
using DeviceType = rayx::DeviceConfig::DeviceType;
using Device = rayx::DeviceConfig::Device;
using Index = Device::Index;
us... |
b9ef22b8aad8bc2885694e9e09b10da18f345d3f84bee18eb4172a183046a574 | C++ | 6,218 | 317 | /*
* Copyright (C) 2010 Regents of the University of Michigan
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later v... |
ffb6d126cd02b7372d42931b46b70d86a03b174ce74313344b35256a91193d78 | C++ | 6,242 | 146 | #include "RenderObject.h"
#include <glm/gtx/matrix_decompose.hpp>
#include "Debug/Instrumentor.h"
#include "Plotting.h"
#include "RayProcessing.h"
#include "Triangulation/GeometryUtils.h"
#include "Triangulation/Triangulate.h"
/**
* Constructor sets up vertex and index buffers based on the input parameters.
*/
Ren... |
220fc602a75fb2e626e099828fc0d70b0371e0d7513c3e996831201e2e96318c | C++ | 6,259 | 209 | /*
#################################################################################
#
# STEPS - STochastic Engine for Pathway Simulation
# Copyright (C) 2007-2026 Okinawa Institute of Science and Technology, Japan.
# Copyright (C) 2003-2006 University of Antwerp, Belgium.
#
# See the file AUTHORS for deta... |
6a02ccf5e46d75b9559a81cbd2bcafa34dbf09d6692d99f3e55024de65b3e5c9 | C++ | 6,260 | 193 | /*
* Copyright (C) 2011 Regents of the University of Michigan
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later v... |
601159210e9754da766bab5b1775b35887a49140b14483325c704e49dde2f2b3 | C++ | 6,274 | 224 | /****************************************************************************
**
** Copyright (c) 2008-2015 C.B. Barber. All rights reserved.
** $Id: //main/2015/qhull/src/libqhullcpp/RboxPoints.cpp#3 $$Change: 2066 $
** $DateTime: 2016/01/18 19:29:17 $$Author: bbarber $
**
*********************************************... |
1dc15966a05975dcc0fd5f75f197f688f447b0b025288f8ad31b7ff596bf7bfd | C++ | 6,289 | 176 | /*
#################################################################################
#
# STEPS - STochastic Engine for Pathway Simulation
# Copyright (C) 2007-2023 Okinawa Institute of Science and Technology, Japan.
# Copyright (C) 2003-2006 University of Antwerp, Belgium.
#
# See the file AUTHORS for ... |
0103308b9a2895cc2a256429b43f210f309cfe3ab430e5a35d20b4e6ea934575 | C++ | 6,291 | 198 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
553dff8a955945b53ccc6ff9e3924f4d840bd3907931f569b7ab39d4dfaf79ed | C++ | 6,295 | 220 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
98597ac1e9543b851ac33fd08b693b4e5e4607aff6e054f674634ada7fdc495f | C++ | 6,297 | 121 | #include "CommandParser.h"
#include <CLI/CLI.hpp>
#include "Debug/Debug.h"
#include "Debug/Instrumentor.h"
#include "Random.h"
#include "TerminalAppConfig.h"
#include "Tracer/Tracer.h"
namespace {
void getVersion() {
std::cout << R"(
╔═══╗╔═══╗╔╗ ╔╗╔═╗╔═╗
║╔═╗║║╔═╗║║╚╗╔╝║╚╗╚╝╔╝
║╚═╝║║║ ║║╚╗╚╝╔╝ ╚╗╔╝
║... |
720d931221c9077db7424ffebd0f6ddb13feb52fdc16d984017ce28c1bc01ffc | C++ | 6,307 | 194 | // (C) Copyright 2008 CodeRage, LLC (turkanis at coderage dot com)
// (C) Copyright 2003-2007 Jonathan Turkanis
// Distributed under the Boost Software License, Version 1.0. (See accompanying
// file LICENSE_1_0.txt or copy at http://www.boost.org/LICENSE_1_0.txt.)
// See http://www.boost.org/libs/iostreams for docume... |
0be4906b5c7a9c2ad6fddb7b9d561c388519387fa7128618e3f294047b10630f | C++ | 6,324 | 216 | // ***************************************************************************
// bamtools_revert.cpp (c) 2010 Derek Barnett, Alistair Ward
// Marth Lab, Department of Biology, Boston College
// ---------------------------------------------------------------------------
// Last modified: 7 April 2011
// ---------------... |
4230f6d9c7290916bfd9f5474b5bad1656a14192631b1319c0f5d6ed91f8c153 | C++ | 6,339 | 211 | #include "Material.h"
#ifdef _WIN32
#include <string.h>
#else
#include <strings.h>
#endif
#include "Debug/Debug.h"
#include "NffTable.h"
#include "PalikTable.h"
#include "CromerTable.h"
#include "MolecTable.h"
namespace rayx {
/**
* returns the name of the material:
* EXAMPLE: getMaterialName(Material::Cu) == "CU... |
0392820215009d2019c9bdcdb640628a17e2505d3f850a2629b6dec0dedee511 | C++ | 6,344 | 178 | /*
#################################################################################
#
# STEPS - STochastic Engine for Pathway Simulation
# Copyright (C) 2007-2026 Okinawa Institute of Science and Technology, Japan.
# Copyright (C) 2003-2006 University of Antwerp, Belgium.
#
# See the file AUTHORS for deta... |
a45edcd231c321227147260462e5d7ef4905177e387cb8a43f05fc404353e9e5 | C++ | 6,347 | 199 | /*
#################################################################################
#
# STEPS - STochastic Engine for Pathway Simulation
# Copyright (C) 2007-2023 Okinawa Institute of Science and Technology, Japan.
# Copyright (C) 2003-2006 University of Antwerp, Belgium.
#
# See the file AUTHORS for ... |
cb10f65bad6d6cba7cf68969df609212128f7dff29956cecd36b2255de6980cc | C++ | 6,372 | 160 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
ee967ed6c8f2cd887e69e6de9b810786303ca7d453abfcb1d3595bb370bb3e60 | C++ | 6,376 | 174 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
aa1246f3b061ba316321d26f88ee0bdaf3a17d25bae6345753cb5b65e9e19c71 | C++ | 6,385 | 180 | /*
* Copyright (C) 2010 Regents of the University of Michigan
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later v... |
cd5e5238761eafc1512466771734ac9b1b39ebf42e3d2a49b73f0c6a86866702 | C++ | 6,408 | 178 | // A single or two-stage median filter
/*
Open Source ECG Toolbox, version 2.0, March 2008
Released under the GNU General Public License
Copyright (C) 2008 Reza Sameni
Sharif University of Technology, Tehran, Iran -- GIPSA-Lab, INPG, Grenoble, France
reza.sameni@gmail.com
This program... |
22943f9ba21b3ce462eb779bad426ae89de468c6452701bb0e97b7f0fc4cd74b | C++ | 6,436 | 196 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
5d5f7802f593dbeab56325c31a457e0a8157682fcedae5bac0bfceb700ff404d | C++ | 6,441 | 162 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
ef08d4aff825adfd99627e5c038025614b67fcbddcda8f970657961a554ed90c | C++ | 6,454 | 240 | // An ascending sorted list class used for efficient max/min finding and trimmed mean/median filtering
/*
% Revision History:
% 2008: First release
% 2023: Renamed from deprecated version List.cpp
% 2024: Added max/min finding
%
% Reza Sameni, 2022-2023 The Open-Source Electrophysiological Toolbox
% htt... |
85754fafcd66cf0dcb561704c2a8147b78064e0b7b92fcc7faeb43203b0fdeba | C++ | 6,466 | 181 | #include "Importer.h"
#include <cstring>
#include <memory>
#include <rapidxml.hpp>
#include <sstream>
#include <string>
#include "Beamline/Beamline.h"
#include "Debug/Debug.h"
#include "Debug/Instrumentor.h"
#include "Design/DesignElement.h"
#include "DesignElementWriter.h"
#include "DesignSourceWriter.h"
#include "E... |
ebbb167915ad639e78efbac7c176fefc212c6476f8a30379ba7fb882ddc4ebc0 | C++ | 6,467 | 213 | /*
#################################################################################
#
# STEPS - STochastic Engine for Pathway Simulation
# Copyright (C) 2007-2026 Okinawa Institute of Science and Technology, Japan.
# Copyright (C) 2003-2006 University of Antwerp, Belgium.
#
# See the file AUTHORS for deta... |
f9701b68ef4fefee73eb9fc5cbc83fb7d3b0c0ccc4d09e99e8f8473d9382cff6 | C++ | 6,483 | 213 | /*
#################################################################################
#
# STEPS - STochastic Engine for Pathway Simulation
# Copyright (C) 2007-2023 Okinawa Institute of Science and Technology, Japan.
# Copyright (C) 2003-2006 University of Antwerp, Belgium.
#
# See the file AUTHORS for ... |
4f04bfa5012167711b8a86a702be6c6c8c6e07e5a37b8e4674548399c72f8b51 | C++ | 6,499 | 227 | /*
#################################################################################
#
# STEPS - STochastic Engine for Pathway Simulation
# Copyright (C) 2007-2026 Okinawa Institute of Science and Technology, Japan.
# Copyright (C) 2003-2006 University of Antwerp, Belgium.
#
# See the file AUTHORS for deta... |
52a141ca116077b98eeb27824db3ba9788cc67ad31618c7610d71a753e8e50f3 | C++ | 6,506 | 230 | /**
* Copyright (c) Facebook, Inc. and its affiliates.
*
* This source code is licensed under the MIT license found in the
* LICENSE file in the root directory of this source tree.
*/
#include "doc_data.h"
#include "utils/utils.h"
#include <string>
#include <vector>
#include <fstream>
#include <assert.h>
#includ... |
93bd527b6d9a75a4a570f6dc118e60508f3be5ff0afb8f5d2048504b8da84b94 | C++ | 6,515 | 227 | /*
#################################################################################
#
# STEPS - STochastic Engine for Pathway Simulation
# Copyright (C) 2007-2023 Okinawa Institute of Science and Technology, Japan.
# Copyright (C) 2003-2006 University of Antwerp, Belgium.
#
# See the file AUTHORS for ... |
e1591035a957c5d18fb5b47117c4b1ff603cae7a826975f08092084d0e049627 | C++ | 6,533 | 207 | /*
#################################################################################
#
# STEPS - STochastic Engine for Pathway Simulation
# Copyright (C) 2007-2026 Okinawa Institute of Science and Technology, Japan.
# Copyright (C) 2003-2006 University of Antwerp, Belgium.
#
# See the file AUTHORS for deta... |
499e4a02ce965d3886bd5f840fbaf50c3930ea9ab4c7d2599fbab7d0ab79d38f | C++ | 6,586 | 168 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
f4f8cc0a3db58de647c9d890725ed94df819767df721709301f4adb27a10d000 | C++ | 6,612 | 181 | #include "Camera.h"
#include <imgui_impl_sdl3.h>
#include <imgui_impl_vulkan.h>
#include <fstream>
#include <glm/gtc/matrix_transform.hpp>
#include <sstream>
CameraController::CameraController()
: m_position(0.0f, 5.0f, -10.0f),
m_direction(0.0f, 0.0f, 1.0f),
m_cameraMode(CameraMode::Perspective),
... |
981d4a77ef0514ab22144cdde79a5a63414764f679f02ba9eed2dfe5458c6843 | C++ | 6,626 | 237 | /****************************************************************************
**
** Copyright (c) 2008-2015 C.B. Barber. All rights reserved.
** $Id: //main/2015/qhull/src/libqhullcpp/QhullQh.cpp#5 $$Change: 2066 $
** $DateTime: 2016/01/18 19:29:17 $$Author: bbarber $
**
************************************************... |
bdbcab98555d779847f68605b9e7c42fb2414cf851749bf8d844350229bea1cb | C++ | 6,684 | 188 | #include "efield.hpp"
#include "../mol_state.hpp"
#include "geom/dist/distmemb.hpp"
#include "geom/dist/distmesh.hpp"
#include "geom/patch.hpp"
#include "math/constants.hpp"
#include "model/chan.hpp"
#include "model/chanstate.hpp"
#include "model/ghkcurr.hpp"
#include "model/ohmiccurr.hpp"
#include "model/surfsys.hpp"... |
9b6530eb7f61d915684ca2ddcc01bcc8b52f36c34d33e2f13b3e2e5523b237d0 | C++ | 6,701 | 161 | #include "Behaviour.h"
#include "Beamline/Beamline.h"
#include "Beamline/Definitions.h"
#include "Design/DesignElement.h"
#include "Shader/Utils.h"
namespace rayx {
Behaviour makeBehaviour(const DesignElement& dele) {
switch (dele.getBehaviourType()) {
case BehaviourType::Crystal:
return make... |
60314174ac2f271f3f36043025dbf79a60955eb70225150b8ec0ff6c2822fd5e | C++ | 6,704 | 134 | #include <FAST/Testing.hpp>
#include <FAST/Algorithms/NeuralNetwork/SegmentationNetwork.hpp>
#include <FAST/Importers/ImageFileImporter.hpp>
#include <FAST/Visualization/SimpleWindow.hpp>
#include <FAST/Streamers/ImageFileStreamer.hpp>
#include <FAST/Algorithms/NeuralNetwork/InferenceEngineManager.hpp>
#include <fstrea... |
1b351bbf0f29be5ddb3238aa88bfd483948c517be564049ae9726376b7dba9d0 | C++ | 6,713 | 180 | #include "model/diff.hpp"
#include "model/volsys.hpp"
#include "mpi/dist/tetopsplit/kproc/kproc_state.hpp"
#include "steps/mpi/dist/tetopsplit/mol_state.hpp"
#include "test_common.hpp"
#include <iostream>
#include <catch2/catch_test_macros.hpp>
#include <catch2/matchers/catch_matchers_floating_point.hpp>
namespace ... |
ca6b8bd0ba0a8c242e62642b164569c650b2ddbfb3b54cf947d7cba38e985809 | C++ | 6,726 | 166 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
4ff0c9366f4d558cabcb8464379484630d4dc8f72cba4898ab989112c7f24246 | C++ | 6,729 | 179 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
5409cb5e63e94c2964ac14810114402547e9b42fdedda76cc3509dbeb025237b | C++ | 6,746 | 217 | /*
* Copyright (C) 2012 Regents of the University of Michigan
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later v... |
7df7f3f8e8c6c2a77d61d90cb6e36f0fb187f763ce2537c1af5d3ea97d8f129c | C++ | 6,749 | 158 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
fea457295c4559e79ff7a1461170557408e248c52e07197601460ced0e372410 | C++ | 6,788 | 187 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
9c4ac773278e742c7680f1d9a842301d8d5ec6d0b7f44eca8acd82f1d986c664 | C++ | 6,821 | 233 | /*
#################################################################################
#
# STEPS - STochastic Engine for Pathway Simulation
# Copyright (C) 2007-2026 Okinawa Institute of Science and Technology, Japan.
# Copyright (C) 2003-2006 University of Antwerp, Belgium.
#
# See the file AUTHORS for deta... |
10fda0e3e7577f858446ad888ec6d692fdcbf78e72e2906961f782bf3cbb8711 | C++ | 6,837 | 233 | /*
#################################################################################
#
# STEPS - STochastic Engine for Pathway Simulation
# Copyright (C) 2007-2023 Okinawa Institute of Science and Technology, Japan.
# Copyright (C) 2003-2006 University of Antwerp, Belgium.
#
# See the file AUTHORS for ... |
cde9b63e42bbe6851dfdf33a9ca9a37563352ef0e0b43165ee76c6a14f2b82e6 | C++ | 6,864 | 211 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
baba9abb8fb2c8f83975ff1e3efc1b50b868629403cfbb0e6f6d6e7e6b4090c5 | C++ | 6,878 | 214 | // ***************************************************************************
// bamtools.cpp (c) 2010 Derek Barnett, Erik Garrison
// Marth Lab, Department of Biology, Boston College
// ---------------------------------------------------------------------------
// Last modified: 12 October 2012 (DB)
// --------------... |
a0dc66d51fb4991453dc79426a5d2083b42cf48d52790643179890a3ac04e9d9 | C++ | 6,882 | 189 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
b3612e90f38223ff1555e1ad872ef9f1daa3e6c83d54ff2166a5253fd284a5be | C++ | 6,885 | 184 | #include "../src/meshoptimizer.h"
#include <stdint.h>
#include <stdlib.h>
#include <string.h>
void fuzzDecoder(const uint8_t* data, size_t size, size_t stride, int (*decode)(void*, size_t, size_t, const unsigned char*, size_t))
{
size_t count = 66; // must be divisible by 3 for decodeIndexBuffer; should be >=64 to c... |
f5d4fa046badc1f9ecaa9caf51090abefbe3f6fa2d6d62392a9d54094150ff9c | C++ | 6,889 | 214 | // This file is part of gltfpack; see gltfpack.h for version/license details
#ifdef WITH_BASISU
#include "gltfpack.h"
#define BASISU_NO_ITERATOR_DEBUG_LEVEL
#ifdef __clang__
#pragma GCC diagnostic ignored "-Wunknown-warning-option"
#pragma GCC diagnostic ignored "-Warray-bounds"
#pragma GCC diagnostic ignored "-Wc++1... |
4f3449cc20eeaef72135b38a6fa759d66f452bacac915ffbe07064783705f31f | C++ | 6,892 | 224 | // ***************************************************************************
// HostInfo_p.cpp (c) 2011 Derek Barnett
// Marth Lab, Department of Biology, Boston College
// ---------------------------------------------------------------------------
// Last modified: 8 December 2011 (DB)
// ---------------------------... |
ec82b5f56de86ab39563fde156283d7a2097a23a5391c7725189d5a299c70bfa | C++ | 6,893 | 235 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
1a47b1e825085d2905a4f1f8f94ab3aa5716501f9eeeda38713786d27f8fd1f0 | C++ | 6,900 | 231 | // ***************************************************************************
// bamtools_count.cpp (c) 2010 Derek Barnett, Erik Garrison
// Marth Lab, Department of Biology, Boston College
// ---------------------------------------------------------------------------
// Last modified: 10 December 2012
// ------------... |
639e457517d71f38e4231fbed094ed7610dd23502c3816c6a1ee06514921c89e | C++ | 6,915 | 147 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
db5693f6bd258df65a0e8774d2c7f7a7d8b9a248bd2891069c02db36f08a51fe | C++ | 6,940 | 197 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
38bd63e0082a2f17c015a67bd5432e8ecb6ba310778ea49e505a347f59122a38 | C++ | 6,952 | 273 |
/*
#################################################################################
#
# STEPS - STochastic Engine for Pathway Simulation
# Copyright (C) 2007-2026 Okinawa Institute of Science and Technology, Japan.
# Copyright (C) 2003-2006 University of Antwerp, Belgium.
#
# See the file AUTHORS for det... |
c343fd7e665c7da3f729de30fb64e1be9a93eb9904fcbccbab0d9893b599ee56 | C++ | 6,968 | 273 |
/*
#################################################################################
#
# STEPS - STochastic Engine for Pathway Simulation
# Copyright (C) 2007-2023 Okinawa Institute of Science and Technology, Japan.
# Copyright (C) 2003-2006 University of Antwerp, Belgium.
#
# See the file AUTHORS for... |
d665bf81db601d991fa96d89eef1e92548f8be4886cad125d9cbd3bf2f58e57f | C++ | 6,974 | 241 | #include "genomult.h"
#include <iostream>
#include <fstream>
#include <vector>
using namespace std;
//
// Compute y^T X X^T y : output is a scalar
// X = X0[1:Nindv,index:(index+num_snp-1)]
// X0 : genotype matrix of Nindv X Nsnp
// vec (matrix of dimension Nindv X 1) (usually phenotype)
double compute_yXXy (int num... |
17dff87ae38f46697e7d7c64396f881c4e8e52af0c9b5e18a32af28c111af44b | C++ | 7,015 | 206 | /*
Copyright (C) 2014 Sergey Demyanov.
contact: sergey@demyanov.net
http://www.demyanov.net
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any l... |
f26473ab5749b37edd39b52b0433b1e47487479eb87aff2cd988e03e38d0d94b | C++ | 7,019 | 220 | /*
#################################################################################
#
# STEPS - STochastic Engine for Pathway Simulation
# Copyright (C) 2007-2023 Okinawa Institute of Science and Technology, Japan.
# Copyright (C) 2003-2006 University of Antwerp, Belgium.
#
# See the file AUTHORS for ... |
e78bc248a7974d9c1cbf70a2e61c8c444266acd974427d0f28b53186711f7ad5 | C++ | 7,024 | 191 | /*
* Copyright (C) 2010 Regents of the University of Michigan
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later v... |
376d27ddd3c45c2e33a3afee9c546b675efb69bf91fc2706271f383b5e03b213 | C++ | 7,032 | 204 | /*
#################################################################################
#
# STEPS - STochastic Engine for Pathway Simulation
# Copyright (C) 2007-2026 Okinawa Institute of Science and Technology, Japan.
# Copyright (C) 2003-2006 University of Antwerp, Belgium.
#
# See the file AUTHORS for deta... |
0957329aa5cb1553acf85250169b5a38b82baaba7449b136eb92fd1daccd32ad | C++ | 7,033 | 246 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
fa8aafc98c8130954a11971927b21f35cf231f7718b97665c2183b7581535d02 | C++ | 7,034 | 227 | // ***************************************************************************
// TcpSocketEngine_unix_p.cpp (c) 2011 Derek Barnett
// Marth Lab, Department of Biology, Boston College
// ---------------------------------------------------------------------------
// Last modified: 15 November 2011 (DB)
// --------------... |
cf559a92febdbb29a0d5b8ab2826613112b54f49dd5a93a44a94cdd1453e93ec | C++ | 7,048 | 204 | /*
#################################################################################
#
# STEPS - STochastic Engine for Pathway Simulation
# Copyright (C) 2007-2023 Okinawa Institute of Science and Technology, Japan.
# Copyright (C) 2003-2006 University of Antwerp, Belgium.
#
# See the file AUTHORS for ... |
b83d4b69897dc99c31eda97019e3684d185802495423c63d4309342b185d986b | C++ | 7,052 | 227 | /*
#################################################################################
#
# STEPS - STochastic Engine for Pathway Simulation
# Copyright (C) 2007-2026 Okinawa Institute of Science and Technology, Japan.
# Copyright (C) 2003-2006 University of Antwerp, Belgium.
#
# See the file AUTHORS for deta... |
18dbf7841ebdae4d670e9fbc5aef7c87af00dc0bab422f472dab43f8bb10d574 | C++ | 7,065 | 188 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
bc6550ef31a4c767f72847fdeb8082c0861a9cce32afd9a8b4997c18626f573e | C++ | 7,068 | 227 | /*
#################################################################################
#
# STEPS - STochastic Engine for Pathway Simulation
# Copyright (C) 2007-2023 Okinawa Institute of Science and Technology, Japan.
# Copyright (C) 2003-2006 University of Antwerp, Belgium.
#
# See the file AUTHORS for ... |
b49432f2a0283aad71de7ec4e51112521bece2f56fa31cc14b62feb33830e0ca | C++ | 7,070 | 249 | /*
#################################################################################
#
# STEPS - STochastic Engine for Pathway Simulation
# Copyright (C) 2007-2026 Okinawa Institute of Science and Technology, Japan.
# Copyright (C) 2003-2006 University of Antwerp, Belgium.
#
# See the file AUTHORS for deta... |
9c16972065af70bd1840a1ed0abaf5a728575aa676abc31b86e2ee1d4bce2a49 | C++ | 7,091 | 203 | #include "distpatch.hpp"
#include <sstream>
#include "util/error.hpp"
#include "util/mpitools.hpp"
namespace steps::dist {
DistPatch::DistPatch(const mesh::patch_name& patch,
DistMesh& mesh,
DistComp& icomp,
DistComp* ocomp)
: DistPatch(patch, mesh,... |
675bfd90b3b17dd2b1b74e7eaab1ed5049163fc927aeefe54e395238aef6b951 | C++ | 7,108 | 164 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
c13b030cc1148adc8fc78637c66d289212af6b3379f8261ba648c61a71e9e8e7 | C++ | 7,110 | 163 | #include "diffusions.hpp"
#include "../simulation_data.hpp"
#include "geom/dist/distmesh.hpp"
#include "model/diff.hpp"
#include "mpi/dist/tetopsplit/definition/statedef.hpp"
#include "util/vocabulary.hpp"
namespace steps::dist::kproc {
DiffusionDiscretizedRates::DiffusionDiscretizedRates(const osh::LOs& neighbors_p... |
c4873a11b1d002cb2d789ad81c09bf0c46382c569a406ed7d190ef9625d759f8 | C++ | 7,121 | 226 | /*
#################################################################################
#
# STEPS - STochastic Engine for Pathway Simulation
# Copyright (C) 2007-2026 Okinawa Institute of Science and Technology, Japan.
# Copyright (C) 2003-2006 University of Antwerp, Belgium.
#
# See the file AUTHORS for deta... |
83a63f70936b262543aea07e8ccba53b2f3af3abace049b1b570e0492dce8a35 | C++ | 7,135 | 162 | #include "Scene.h"
#include <algorithm>
#include <numeric>
#include <unordered_set>
#include "Debug/Instrumentor.h"
#include "Plotting.h"
#include "RayProcessing.h"
#include "RenderObject.h"
#include "Triangulation/GeometryUtils.h"
#include "Triangulation/Triangulate.h"
#include "Vertex.h"
Scene::Scene(Device& devic... |
09c440df3bb5e2db52b3b2c7c006997c2f84e29cad417664b608a48d0959b441 | C++ | 7,137 | 226 | /*
#################################################################################
#
# STEPS - STochastic Engine for Pathway Simulation
# Copyright (C) 2007-2023 Okinawa Institute of Science and Technology, Japan.
# Copyright (C) 2003-2006 University of Antwerp, Belgium.
#
# See the file AUTHORS for ... |
7810d22e1aaa6ae73c3ff6daa1cab436281b3bbf262d9ae6ee9c6fa14c2f51a3 | C++ | 7,141 | 178 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
d1f9e3043ab5639fc25b2e9c228bf03d4db807ccd59df4dc6e37b12eab034fc6 | C++ | 7,154 | 199 | // Resampler.cpp: implementation of a fractional Resampler class.
/*
% Revision History:
% 2012: First release
% 2023: Renamed from deprecated version Resampler.cpp
%
% Reza Sameni, 2012-2023 The Open-Source Electrophysiological Toolbox
% https://github.com/alphanumericslab/OSET
*/
///////////////////////////////... |
3cc7776f4e932cf6b2ed5ed1a0003a58ae37c0bea2322fe421bef8b141da5702 | C++ | 7,155 | 172 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
ef37c74f0de9db54f0b8209dc92c873472f8c081ec096a9a963bea2f867c3a28 | C++ | 7,185 | 258 | /*
* Copyright (C) 2012-2013 Regents of the University of Michigan
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any la... |
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