sha256 stringlengths 64 64 | language stringclasses 28
values | size int32 1 491k | lines int32 1 23.2k | content stringlengths 1 200k |
|---|---|---|---|---|
74095942c29e67eab206a975eb3c2ee829c74a20696fe6d57d38de1a7a79f053 | C++ | 7,186 | 320 | /****************************************************************************
**
** Copyright (c) 2009-2015 C.B. Barber. All rights reserved.
** $Id: //main/2015/qhull/src/libqhullcpp/QhullPoints.cpp#3 $$Change: 2066 $
** $DateTime: 2016/01/18 19:29:17 $$Author: bbarber $
**
********************************************... |
ef10c0cc4ece1e47b5efe0823e42084354c03aae441f040e85acef253381796e | C++ | 7,197 | 235 | /*
* Copyright (C) 2010 Regents of the University of Michigan
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later v... |
fb36a0307052be89754557f392102cc5d4819b726f752c87fa7cb67c9399e3c3 | C++ | 7,226 | 188 | /*
Copyright (C) 2014 Sergey Demyanov.
contact: sergey@demyanov.net
http://www.demyanov.net
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any l... |
841cb04e3648e4e4b235f9dcdeb1f52b2f5bf0dbc9a890b331efce241e8d7bf9 | C++ | 7,242 | 252 | /*
#################################################################################
#
# STEPS - STochastic Engine for Pathway Simulation
# Copyright (C) 2007-2023 Okinawa Institute of Science and Technology, Japan.
# Copyright (C) 2003-2006 University of Antwerp, Belgium.
#
# See the file AUTHORS for ... |
941bdeae8e50af7e7b3ab7a7edf0728b4b71711440d87b1b55840214a57f5859 | C++ | 7,245 | 234 | /*
#################################################################################
#
# STEPS - STochastic Engine for Pathway Simulation
# Copyright (C) 2007-2026 Okinawa Institute of Science and Technology, Japan.
# Copyright (C) 2003-2006 University of Antwerp, Belgium.
#
# See the file AUTHORS for deta... |
cf2649d599905f381de0c8bc248ca28f377d1da88fa1ef5954fdd4f77109ee0e | C++ | 7,245 | 218 | /*
#################################################################################
#
# STEPS - STochastic Engine for Pathway Simulation
# Copyright (C) 2007-2026 Okinawa Institute of Science and Technology, Japan.
# Copyright (C) 2003-2006 University of Antwerp, Belgium.
#
# See the file AUTHORS for detai... |
926d9a3c81a744abd85f5ffc368e15710168d1246e968a6cfcafc8885919fd25 | C++ | 7,253 | 349 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
a251d4974461ff50e442fd700b5ebec596e502032680d535d1f1692e7bb682a3 | C++ | 7,261 | 218 | /*
#################################################################################
#
# STEPS - STochastic Engine for Pathway Simulation
# Copyright (C) 2007-2023 Okinawa Institute of Science and Technology, Japan.
# Copyright (C) 2003-2006 University of Antwerp, Belgium.
#
# See the file AUTHORS for d... |
e799058ea316201f74475e25f6da23df0ff08e4825b634513580a9e25afadbb5 | C++ | 7,261 | 234 | /*
#################################################################################
#
# STEPS - STochastic Engine for Pathway Simulation
# Copyright (C) 2007-2023 Okinawa Institute of Science and Technology, Japan.
# Copyright (C) 2003-2006 University of Antwerp, Belgium.
#
# See the file AUTHORS for ... |
1a2df14ece4d7baac2715cd3ff425b63bebfda98323a70b38750b8c1b5a2d717 | C++ | 7,304 | 303 | /*
* Copyright (C) 2011-2012 Regents of the University of Michigan,
* Hyun Min Kang, Matthew Flickenger, Matthew Snyder,
* and Goncalo Abecasis
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General... |
ff981a3e40777b5b379edcf0821da24379abb43ff7ee2b3e774a7dedc6dcc6bf | C++ | 7,314 | 210 | #include "steps/util/strong_id.hpp"
#include "steps/util/strong_ra.hpp"
#include <numeric>
#include <catch2/catch_test_macros.hpp>
using steps::util::is_promotion;
using steps::util::strong_id;
static constexpr struct random_id_trait_t {
} random_id_trait{};
static constexpr struct not_a_number_t {
} not_a_number{}... |
530ca662107366200ad5489f544b1ebc028caede393b608edd3ebbb63c839ae8 | C++ | 7,322 | 181 | /*
Copyright (C) 2014 Sergey Demyanov.
contact: sergey@demyanov.net
http://www.demyanov.net
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any l... |
4cce89956552f9bfa174b80dc39848ebece1ba7d83c82d582438a9e0708ee285 | C++ | 7,341 | 254 | /*
* Copyright (C) 2011 Regents of the University of Michigan
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later v... |
13809170996cb3d18685011920c9b50952e23727d261da2821299c36b6ff682c | C++ | 7,380 | 260 | /**
* Copyright (c) Facebook, Inc. and its affiliates.
*
* This source code is licensed under the MIT license found in the
* LICENSE file in the root directory of this source tree.
*/
#include "dict.h"
#include "parser.h"
#include <assert.h>
#include <algorithm>
#include <iterator>
#include <cmath>
#include <fst... |
457cdd696ea7b7070ff2ee49243fbaca8f4000c89460a6e1edc9858b82ed09f4 | C++ | 7,412 | 264 | /*
* Copyright (C) 2010 Regents of the University of Michigan
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later v... |
735d36aba90c4bf30efcb252d88f01f5b9e194f574f5d677e485e2f369f3d314 | C++ | 7,413 | 145 | /*
* Copyright (C) 2010 Regents of the University of Michigan
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later v... |
3604d103b8b3b97645b0e7698e200d2e8f9e018cd6657a4a20e798bfb2f29e5d | C++ | 7,415 | 201 | #include <algorithm>
#include <cmath>
#include <iostream>
#include <iterator>
#include <map>
#include <utility>
#include <vector>
#include "math/tools.hpp"
#include "rng/create.hpp"
#include "util/error.hpp"
#include <catch2/catch_test_macros.hpp>
using namespace steps::rng;
using namespace steps::math;
///--- sig... |
c4a9d14a3e3137df10f43ebeffd683ddafd83de4a5a1b981c5b800a424b00a2e | C++ | 7,435 | 169 | #include "Descriptors.h"
#include <cassert>
#include "Debug/Debug.h"
// *************** Descriptor Set Layout Builder *********************
DescriptorSetLayout::Builder& DescriptorSetLayout::Builder::addBinding(uint32_t binding, VkDescriptorType descriptorType,
... |
08d414fa1b7d3b060ca0852052f2b2fb844dc21404459aab4db6eaef8abac6df | C++ | 7,444 | 229 | /*
#################################################################################
#
# STEPS - STochastic Engine for Pathway Simulation
# Copyright (C) 2007-2026 Okinawa Institute of Science and Technology, Japan.
# Copyright (C) 2003-2006 University of Antwerp, Belgium.
#
# See the file AUTHORS for deta... |
cd381667b42b02c18de51f5635cbb817eeabf861a84ab19d15f93d845ca146dc | C++ | 7,445 | 251 | /*
#################################################################################
#
# STEPS - STochastic Engine for Pathway Simulation
# Copyright (C) 2007-2026 Okinawa Institute of Science and Technology, Japan.
# Copyright (C) 2003-2006 University of Antwerp, Belgium.
#
# See the file AUTHORS for deta... |
f71d0768976e71f1b85f7711a89f597a084141390c4333fdc715b1a65b109bf8 | C++ | 7,461 | 251 | /*
#################################################################################
#
# STEPS - STochastic Engine for Pathway Simulation
# Copyright (C) 2007-2023 Okinawa Institute of Science and Technology, Japan.
# Copyright (C) 2003-2006 University of Antwerp, Belgium.
#
# See the file AUTHORS for ... |
17e263feb5c2e755e42e23c2a0346997f7b20d0ee6d182909725e345f803d758 | C++ | 7,499 | 255 | /*
#################################################################################
#
# STEPS - STochastic Engine for Pathway Simulation
# Copyright (C) 2007-2026 Okinawa Institute of Science and Technology, Japan.
# Copyright (C) 2003-2006 University of Antwerp, Belgium.
#
# See the file AUTHORS for deta... |
9fe86b347dd92cdf7bfe1f6a375459fb91395828dcce47d2344611209fbb2265 | C++ | 7,533 | 232 | /*
#################################################################################
#
# STEPS - STochastic Engine for Pathway Simulation
# Copyright (C) 2007-2026 Okinawa Institute of Science and Technology, Japan.
# Copyright (C) 2003-2006 University of Antwerp, Belgium.
#
# See the file AUTHORS for deta... |
eceeb26b9e63d5c282a5bd8198a0eb651efe107c1293b012dc6e7766a3ff1d5b | C++ | 7,555 | 239 | /*
* Copyright (C) 2010-2012 Regents of the University of Michigan
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any la... |
c2d017caad75c3578ff388a5d5d0852373dab7bc855707d494536a63a7f247d5 | C++ | 7,577 | 198 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
0f91b8c5feaf6a327c4a67a1fedd877addf467405bac2b04a71398373fec9dae | C++ | 7,597 | 222 | // trimmed_filter_main.cpp for the trimmed_filter.cpp (for compiling and running from the terminal)
/*
% Revision History:
% 2008: First release
% 2023: Renamed from deprecated version TrimmedFilter.cpp
%
% Reza Sameni, 2022-2023 The Open-Source Electrophysiological Toolbox
% https://github.com/alphanumericslab/OS... |
a77f54f95a533fe37d4a5e8519f7e3d9c784baa8fce86b92f8ad213766af00f7 | C++ | 7,602 | 172 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
cc1a1ebb1efb0eadfa934eae09835a1bddd3319e1fa908f7cd348d12dd225455 | C++ | 7,622 | 186 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
9dfd86ff33af895030e02010de0fb81ba71a013ecc2602574d4e7e5bbdfb0b20 | C++ | 7,623 | 242 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
685083b99e74185fe54b8c6b1d1add699f97ab55aa9f674797fbd40494e92062 | C++ | 7,665 | 293 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
19b3551a989e2da65e78adc9bef9eabba394c0b9306b14ac8c547b6c05375911 | C++ | 7,740 | 206 | /*
#################################################################################
#
# STEPS - STochastic Engine for Pathway Simulation
# Copyright (C) 2007-2026 Okinawa Institute of Science and Technology, Japan.
# Copyright (C) 2003-2006 University of Antwerp, Belgium.
#
# See the file AUTHORS for deta... |
817ff508e581f109cb9d688d0d82391d14c24bc9d53bef3c06afc0a561db1b9e | C++ | 7,756 | 206 | /*
#################################################################################
#
# STEPS - STochastic Engine for Pathway Simulation
# Copyright (C) 2007-2023 Okinawa Institute of Science and Technology, Japan.
# Copyright (C) 2003-2006 University of Antwerp, Belgium.
#
# See the file AUTHORS for ... |
51f1f7dbc013e896db8c549a968d64cdd94478026bee12a86b47ee2d9047ab8b | C++ | 7,758 | 219 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
80c94aa0b126c1363a349ce2d775376626080ac9cbbde6e25f2ecd74c92f5178 | C++ | 7,780 | 219 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
285f07cb59ac9dec6728878c10462728093fa290e5a275523d9e2a12d91dff6b | C++ | 7,859 | 269 | /*
#################################################################################
#
# STEPS - STochastic Engine for Pathway Simulation
# Copyright (C) 2007-2026 Okinawa Institute of Science and Technology, Japan.
# Copyright (C) 2003-2006 University of Antwerp, Belgium.
#
# See the file AUTHORS for deta... |
f87bddd8abc854b82c8c5e9487b0f9d75680aa8af9c05aa6d299f702ad63b1a8 | C++ | 7,866 | 265 | /*
#################################################################################
#
# STEPS - STochastic Engine for Pathway Simulation
# Copyright (C) 2007-2026 Okinawa Institute of Science and Technology, Japan.
# Copyright (C) 2003-2006 University of Antwerp, Belgium.
#
# See the file AUTHORS for deta... |
75a0c634c00997342fc774b308c502c0be1a652f06a55b7e66a7225f19f0e922 | C++ | 7,870 | 265 | /*
#################################################################################
#
# STEPS - STochastic Engine for Pathway Simulation
# Copyright (C) 2007-2023 Okinawa Institute of Science and Technology, Japan.
# Copyright (C) 2003-2006 University of Antwerp, Belgium.
#
# See the file AUTHORS for ... |
adeb43af2824031b3a82986dd7fc1073ccf19154bb3c5cc6303e91cd84af9206 | C++ | 7,875 | 269 | /*
#################################################################################
#
# STEPS - STochastic Engine for Pathway Simulation
# Copyright (C) 2007-2023 Okinawa Institute of Science and Technology, Japan.
# Copyright (C) 2003-2006 University of Antwerp, Belgium.
#
# See the file AUTHORS for ... |
5d2c256e52ea03486bb7881d4b8ae00ce3efd54494925094fda2c94f6faac775 | C++ | 7,878 | 271 | /*
#################################################################################
#
# STEPS - STochastic Engine for Pathway Simulation
# Copyright (C) 2007-2023 Okinawa Institute of Science and Technology, Japan.
# Copyright (C) 2003-2006 University of Antwerp, Belgium.
#
# See the file AUTHORS for ... |
d27bee6d2e3157bb15f474ab34ff7540ac54648072ee6b248c89e685c2c7edb6 | C++ | 7,891 | 240 | /*
#################################################################################
#
# STEPS - STochastic Engine for Pathway Simulation
# Copyright (C) 2007-2026 Okinawa Institute of Science and Technology, Japan.
# Copyright (C) 2003-2006 University of Antwerp, Belgium.
#
# See the file AUTHORS for deta... |
46803e3a11a275804f9a5ec8cb82e08b288ad0e23d96d659ab4b76a9f15682a0 | C++ | 7,960 | 203 | #include "setupTests.h"
namespace {
const auto beamlineFilename = "METRIX_U41_G1_H1_318eV_PS_MLearn_v114";
} // namespace
TEST_F(TestSuite, RayAttrMask) {
EXPECT_EQ(RayAttrMask::None, static_cast<RayAttrMask>(0));
// operator |
EXPECT_EQ(RayAttrMask::PositionX | RayAttrMask::PositionY | RayAttrMask::Pos... |
78d8c34b51dc8f975401f70866a85e7644eccd81de745f8069f35186f40da11e | C++ | 7,964 | 247 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
1479796d9896fea97be205eb379524744fb103e450394dbe657ffb1aabfe0856 | C++ | 8,002 | 210 | #include "rleaping_operator.hpp"
#include "../kproc/diffusions.hpp"
#include "../kproc/kproc_state.hpp"
#include "mpi/dist/tetopsplit/kproc/kproc_id.hpp"
#include "util/collections.hpp"
#include "util/profile/profiler_interface.hpp"
#include <cstddef>
#include <limits>
#include <random>
#include <stdexcept>
#include <... |
f97294179f5449bff852f8bfae16af0fb52222c6936fc3a87f2540e698742b7b | C++ | 8,065 | 251 | // ***************************************************************************
// TcpSocketEngine_win_p.cpp (c) 2011 Derek Barnett
// Marth Lab, Department of Biology, Boston College
// ---------------------------------------------------------------------------
// Last modified: 8 December 2011 (DB)
// ----------------... |
3df15f3c616fa2057e767958a4fc88bb8b2e71134840d666f834128869f2da84 | C++ | 8,100 | 259 | /*
* Copyright (C) 2010 Regents of the University of Michigan
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later v... |
0b30a9616caea117ca0ba8543c62b8771aba88da6175e8d32bd2e1c8c61deb69 | C++ | 8,139 | 224 | #include "distcomp.hpp"
#include <sstream>
#include "util/error.hpp"
#include "util/mpitools.hpp"
namespace steps::dist {
DistComp::DistComp(const mesh::compartment_name& compartment, DistMesh& mesh, double cond)
: DistComp(compartment, mesh, compartment, cond) {
mesh.addComp(model::compartment_id(compartme... |
9d43ad5296725fb84c7f497d2c1812571eb9769e4d5eb6d2f1db97d830325d1e | C++ | 8,146 | 227 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
92775984dfe21493e5c8f61cbd52599f5e81367f26a57b6457f9a840717449e4 | C++ | 8,164 | 247 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
b3a7c8c1a2648abbe4ade190aa311cb57890258000f24c201cd93f0e4a510103 | C++ | 8,169 | 221 | /*
* Copyright (C) 2010 Regents of the University of Michigan
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later v... |
394237e707dba481c8c7f52329b429dfc98a53b442c8cc542f4ebe0a97d35771 | C++ | 8,213 | 224 | #include "setupTests.h"
// define globally decralred invocation state
ConstState inv;
std::unique_ptr<Tracer> tracer;
// helper functions
double parseDouble(std::string s) {
double d;
#if defined(WIN32)
if (sscanf_s(s.c_str(), "%le", &d) != 1) {
#else
if (sscanf(s.c_str(), "%le", &d) != 1) {
#endif
... |
512df7fca83490636520cde0044891e612f73189bc1422ea94692de5e0e29372 | C++ | 8,226 | 275 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
d4668047544a2fddd872ea2cadb70d8d0bab1f9d2256a43766a7645e0e0209ef | C++ | 8,240 | 283 | /**
* Copyright (c) Facebook, Inc. and its affiliates.
*
* This source code is licensed under the MIT license found in the
* LICENSE file in the root directory of this source tree.
*/
#include "data.h"
#include <string>
#include <vector>
#include <fstream>
#include <numeric>
#include <assert.h>
using namespace s... |
0a810b9ddf40f1824e89aed084800fdbbdd91dd7656bfe737730dce417fb1f2a | C++ | 8,254 | 138 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
9454048de84610017af069b121a7cdc01acd022fde10dc5e8cdb2ac6685c79b7 | C++ | 8,258 | 244 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
b0ed11665b7ae347f2d73182a421acf9b04e6b32d2c692f053a0a55b72edfd7a | C++ | 8,269 | 248 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
846e6dd284572d30a6bc27d62452b112b299bbaa5e1e34fa005527c259ac15ef | C++ | 8,271 | 269 | // ***************************************************************************
// SamFormatPrinter.cpp (c) 2010 Derek Barnett
// Marth Lab, Department of Biology, Boston College
// ---------------------------------------------------------------------------
// Last modified: 25 October 2011 (DB)
// ---------------------... |
a5997a3940844e58a8081bde2ad53bcc041d183c7ac6e3db2dd1cf7100ded379 | C++ | 8,285 | 265 | /*
#################################################################################
#
# STEPS - STochastic Engine for Pathway Simulation
# Copyright (C) 2007-2026 Okinawa Institute of Science and Technology, Japan.
# Copyright (C) 2003-2006 University of Antwerp, Belgium.
#
# See the file AUTHORS for deta... |
a06f5b44be31065637fed934a9f210c00c65f9f5dc9d7195dcec395bf0bf6111 | C++ | 8,301 | 265 | /*
#################################################################################
#
# STEPS - STochastic Engine for Pathway Simulation
# Copyright (C) 2007-2023 Okinawa Institute of Science and Technology, Japan.
# Copyright (C) 2003-2006 University of Antwerp, Belgium.
#
# See the file AUTHORS for ... |
a2db9949d5c2d8317ef8ded118f95fd2142772de7c38f93cb9587201f36c6497 | C++ | 8,343 | 237 | /*
#################################################################################
#
# STEPS - STochastic Engine for Pathway Simulation
# Copyright (C) 2007-2023 Okinawa Institute of Science and Technology, Japan.
# Copyright (C) 2003-2006 University of Antwerp, Belgium.
#
# See the file AUTHORS for ... |
08ea418c607290707f2677025ddef5d0399066f1299d3ee5e1bf59ed95cf7d63 | C++ | 8,348 | 236 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
c253cb7b84078d092fc0559f51ede37cf1663cb45e9f602ecc387862b0288e7a | C++ | 8,387 | 262 | // ***************************************************************************
// bamtools_merge.cpp (c) 2010 Derek Barnett, Erik Garrison
// Marth Lab, Department of Biology, Boston College
// ---------------------------------------------------------------------------
// Last modified: 10 December 2012
// ------------... |
434c0afc34667e83a6209df5339ed3643c1a1472934f68e5d1031cef29520d6b | C++ | 8,413 | 230 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
8a22fb4984ac8baeea847a2b12bef80996522d0d4b9f1e24929d809dc431f29e | C++ | 8,423 | 255 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
234f3d4c7fc570aebc9bbe8e5d7c2a95cb75dff13cc7ea5be4f4876563bd4e68 | C++ | 8,430 | 201 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
df4792927960b64b8f6494dcbb3783a77124b806be4d93a66d00aaa0d16ef20f | C++ | 8,434 | 271 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
d2ebbdb8ec1fd02681beeadfa966dfc3205d8dfbc9d042d71e8b611aeb20c541 | C++ | 8,439 | 231 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
effe0d34d796c0b383202124bb8f9eeca00710ce41f97246577b8d944ebf502c | C++ | 8,443 | 275 | /*
#################################################################################
#
# STEPS - STochastic Engine for Pathway Simulation
# Copyright (C) 2007-2026 Okinawa Institute of Science and Technology, Japan.
# Copyright (C) 2003-2006 University of Antwerp, Belgium.
#
# See the file AUTHORS for deta... |
b35fa8a5c151c9bdeb9722e08136212fe6cb84c24b4569cf5f1539ec10a52a76 | C++ | 8,459 | 275 | /*
#################################################################################
#
# STEPS - STochastic Engine for Pathway Simulation
# Copyright (C) 2007-2023 Okinawa Institute of Science and Technology, Japan.
# Copyright (C) 2003-2006 University of Antwerp, Belgium.
#
# See the file AUTHORS for ... |
d00a8669cd961feb6ae2410724783e503172d3d8299a0968951fa5c1c053ed6c | C++ | 8,462 | 425 | /*
* Copyright (C) 2010 Regents of the University of Michigan
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later v... |
d817f25b662058ba13fb29a50c55ca1ea6f109de4ed9ea640842bf7d11cf4c72 | C++ | 8,464 | 201 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
350a0391c243612e80eed0ddfee1d351bb82da21ec9033072a557bc398885e1d | C++ | 8,509 | 241 | /*
* Copyright (C) 2010 Regents of the University of Michigan
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later v... |
49e190d6f8a99186f9d34ac4e5d8e40147e045d20217d3283324facb802189b1 | C++ | 8,510 | 270 | #include "Surface.h"
#include "Beamline/Beamline.h"
#include "Design/DesignElement.h"
namespace rayx {
Surface makeSurface(const DesignElement& dele) {
switch (dele.getCurvatureType()) {
case CurvatureType::Toroidal:
return makeToroid(dele);
case CurvatureType::Spherical:
... |
eda1bff30176601929b2ffbbd90928a77e42729bc1b265caec8b3f53f408bbed | C++ | 8,525 | 224 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
a4b7eea51d5d9c5d815d14e4376a6fb8051a24d8913f55c4e5a47ac72e9896c9 | C++ | 8,537 | 331 | /*
* Copyright (C) 2010-2011 Regents of the University of Michigan
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any la... |
adcbbca40ee2df977066f5dd76ea396d19cac6646430dab7e6f199584940fbc2 | C++ | 8,554 | 258 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
22eb5ce426283bfce60776ffc5173fbe2800539b5727930e57fd543fe09f2465 | C++ | 8,570 | 330 | /*
* Copyright (C) 2010-2011 Regents of the University of Michigan,
* Hyun Min Kang, Matthew Flickenger, Matthew Snyder,
* and Goncalo Abecasis
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General... |
e32ffb466e0b836e886b542d35e007e267396dd4a8661cce78225360e0d759b4 | C++ | 8,575 | 278 | #ifndef SUP_FUNCTIONS_HPP_
#include "sup_functions.hpp"
#endif
#include <array>
#include <cmath>
#include <filesystem>
#include <iostream>
#include <string>
#include <vector>
using namespace std;
namespace sup {
// 数据展开
template <class dtype>
const vector<dtype> vec_flat(const vector<vector<dtype>> &in_data) {
v... |
f2c6a712980916a05ee975b06e59b6da6fb35b69016e5517e46ea452dbbacf56 | C++ | 8,603 | 208 |
#include "patchdef.hpp"
#include "sreacdef.hpp"
#include "statedef.hpp"
namespace steps::dist {
//-------------------------------------------------------
template <>
std::vector<std::unique_ptr<SReacdef>>& Patchdef::getContainer<SReacInfo>() {
return reacdefPtrs_;
}
//-----------------------------------------... |
27f67521c0fb5a85ea8488d193f912a664bf31289415e74878660da5cc4f478c | C++ | 8,610 | 295 | /*
* Copyright (C) 2010 Regents of the University of Michigan
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later v... |
8eb98307952ef7f0332c0da055a74c58949c51e54926149ed0f3cac97bdaec46 | C++ | 8,617 | 276 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
a9b3278dda8e0e0ce0f30dd61c7c6e86ad4f7c9fcee1c8bf9f3cbfe1b02fab50 | C++ | 8,654 | 243 | #include "setupTests.h"
TEST_F(TestSuite, allBeamlineObjects) {
rayx::Beamline bl = loadBeamline("allBeamlineObjects");
// Point, Circle, Dipole, Matrix, Pixel, simple Undulator
CHECK_EQ(bl.numSources(), 6);
// Cone, Cylinder, Ellipsoid, Paraboloid, plane mirror, toroid, slit, sphere grating, plane gra... |
484e5e96e1041063ecd3ef066c0ab9a6d332e8a752462dc1c4ea188125d4cb4d | C++ | 8,707 | 269 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
7c7462f5adeeb3267c5383dc3f678dbb5f0492d7bd5eb339f3308fb1ce540358 | C++ | 8,710 | 376 | /*
* Copyright (C) 2010 Regents of the University of Michigan
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later v... |
2172e0ac82359a19f2880763e2088f51b7ec361b23fb54f743b618691967dbe5 | C++ | 8,739 | 289 | // This file is part of meshoptimizer library; see meshoptimizer.h for version/license details
#include "meshoptimizer.h"
#include <assert.h>
#include <float.h>
#include <string.h>
// This work is based on:
// Nicolas Capens. Advanced Rasterization. 2004
namespace meshopt
{
const int kViewport = 256;
struct Overdra... |
2e4e74b91cabf50109743d1e0304ff9f993c11957b4355fe6bcc287e31632f94 | C++ | 8,787 | 254 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
fc338472fa2d224e37286fda6d3276b272dc4261aff2d8cd736bb834bbce6a87 | C++ | 8,816 | 256 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
2b974eb72260c5b3b7beeb987f0c9e4e3f9c7c0cef2ec498f4bc6e8925312d7b | C++ | 8,835 | 315 | #ifndef GDATA_CLASS_HPP_
#include "gdata_class.hpp"
#endif
void Gdata::error(int error_num) const {
switch (error_num) {
case 1:
throw runtime_error("Error G1: molecule ID out of range!\n");
break;
case 2:
throw runtime_error("Error G2: molecule not found!\n");
... |
4cc125e29f514355b17b986a22398d1ba1980bb44798414e24142f6ef1f82069 | C++ | 8,849 | 275 | /*
#################################################################################
#
# STEPS - STochastic Engine for Pathway Simulation
# Copyright (C) 2007-2023 Okinawa Institute of Science and Technology, Japan.
# Copyright (C) 2003-2006 University of Antwerp, Belgium.
#
# See the file AUTHORS for ... |
168e7285f3596ccb2a31f91413583c15a3d5d992f15a90ed643f441aff42efb5 | C++ | 8,867 | 337 | // ***************************************************************************
// RollingBuffer_p.cpp (c) 2011 Derek Barnett
// Marth Lab, Department of Biology, Boston College
// ---------------------------------------------------------------------------
// Last modified: 8 December 2011 (DB)
// ----------------------... |
6465c7cc6e17275ef0ec5b8e71fe0299b7902f177e4419e75fa48109a950dd31 | C++ | 8,912 | 272 | #include "CsvWriter.h"
#include <filesystem>
#include <fstream>
#include <queue>
#include "Beamline/StringConversion.h"
#include "Debug/Debug.h"
namespace rayx {
namespace fs = std::filesystem;
namespace {
constexpr int PADDING = 0; // extra spaces on the left side in each cell for better readability
// see htt... |
13b3639d77d93fddbbee2a5c147980221b3de4f6b48a62448de5cd801627cfa5 | C++ | 8,935 | 202 | #include "rssa_operator.hpp"
#include <functional>
#include <vector>
#include "mpi/dist/tetopsplit/definition/reacdef.hpp"
#include "mpi/dist/tetopsplit/kproc/diffusions.hpp"
#include "mpi/dist/tetopsplit/kproc/fwd.hpp"
#include "mpi/dist/tetopsplit/kproc/kproc_state.hpp"
#include "mpi/dist/tetopsplit/kproc/reactions... |
691695efaad558dbfdcc0780288fb1d4da41a9073c65e37addf8489ef9d5ed8b | C++ | 8,977 | 275 | /*
#################################################################################
#
# STEPS - STochastic Engine for Pathway Simulation
# Copyright (C) 2007-2026 Okinawa Institute of Science and Technology, Japan.
# Copyright (C) 2003-2006 University of Antwerp, Belgium.
#
# See the file AUTHORS for deta... |
dedaec047919b608a34801007154ce517b459c5dd14a2d64ea5ddfb9f828402b | C++ | 8,985 | 210 | /*
* Copyright (C) 2010 Regents of the University of Michigan
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later v... |
99d7a54ebb2d232746f96257079e4a4889afd8abf7e58c7ea092bcb7c3968cbd | C++ | 8,991 | 372 | /*
* Copyright (C) 2010 Regents of the University of Michigan
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later v... |
d38adbbb000218c167e797f4722e52efed0a3e809d5584ac5efca9694ac40fdf | C++ | 9,032 | 330 | /****************************************************************************
**
** Copyright (c) 2009-2015 C.B. Barber. All rights reserved.
** $Id: //main/2015/qhull/src/qhulltest/QhullLinkedList_test.cpp#3 $$Change: 2062 $
** $DateTime: 2016/01/17 13:13:18 $$Author: bbarber $
**
*************************************... |
dbd581ff17888dcc14dc33594fe2bab43bcfce47ef72c24732bd65d498b29503 | C++ | 9,055 | 248 | #include "Design/Value.h"
#include <stdexcept>
namespace rayx {
DesignMap DesignMap::clone() const {
DesignMap copy;
// If the variant holds a Map, we recursively clone each entry.
if (std::holds_alternative<Map>(m_variant)) {
Map newMap;
const Map& oldMap = std::get<Map>(m_variant);
... |
bb8713b07cc07e566344947ea051b5d4b713f9bb79459fcf65cba1363969c878 | C++ | 9,059 | 248 | #include "distpatch.hpp"
#include <Omega_h_for.hpp>
#include <sstream>
#include <vector>
#include "geom/dist/distcomp.hpp"
#include "geom/dist/distmesh.hpp"
#include "util/error.hpp"
#include "util/mpitools.hpp"
#include "util/vocabulary.hpp"
namespace steps::dist {
DistPatch::DistPatch(const mesh::patch_name& patc... |
5166bd5ba9c4ba314d2336b247b25641f7f980ba20735da9c93ee68e8ae58c6e | C++ | 9,092 | 201 | #include "LineDensity.h"
#include "Element/Behaviour.h"
#include "ImageType.h"
#include "Throw.h"
namespace rayx {
/** Computes the adjusted line density at a specific z-coordinate for variable line spacing (VLS) gratings,
* considering both the surface orientation and polynomial VLS parameters.
*
* @param lineDe... |
56b4cde0c1a57385e12c6289d2ee4e553bd71937dc42480336ce6aeac5e5c595 | C++ | 9,154 | 372 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
6021dde6b2cfd951a61b05a30b2cb7fb847b5b94662f4ceeb7be6d4187e8df32 | C++ | 9,164 | 326 | // This file is part of meshoptimizer library; see meshoptimizer.h for version/license details
#include "meshoptimizer.h"
#include <assert.h>
#include <limits.h>
#include <string.h>
// This work is based on:
// Francine Evans, Steven Skiena and Amitabh Varshney. Optimizing Triangle Strips for Fast Rendering. 1996
// ... |
Subsets and Splits
No community queries yet
The top public SQL queries from the community will appear here once available.