sha256 stringlengths 64 64 | language stringclasses 28
values | size int32 1 491k | lines int32 1 23.2k | content stringlengths 1 200k |
|---|---|---|---|---|
359fe00f428c9b530a1c8d02351206f54ef702b183872924146baeb172f56fe8 | C/C++ | 1,882 | 78 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
50b4d002ce6141f9d3bc53c9ba98becdd15e692d9f0a22b5f9fe56067361f694 | C/C++ | 1,886 | 52 | #pragma once
#include <SDL3/SDL.h>
// Forward declaration of the CameraController class.
class CameraController;
/**
* @brief Context for user input.
*
* Encapsulates parameters that might be needed for input processing.
*/
struct UserInputContext {
CameraController* camController;
bool isSceneWindowHove... |
b9c6dd7e1585c03cdf1d949b1297e1eedd986f92403e1b86be4290181abf13a5 | C/C++ | 1,888 | 39 | /*
* Copyright <2012> <Vincent Le Guilloux,Peter Schmidtke, Pierre Tuffery>
* Copyright <2013-2018> <Peter Schmidtke, Vincent Le Guilloux>
Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without... |
2cb25d3def04ce7bebdd5bfeea7662f8604f66ba20bccbecfdeaef75fe0bb7f4 | C/C++ | 1,889 | 82 | /*
Bayesian Functional GWAS --- MCMC (bfGWAS:MCMC)
Copyright (C) 2016 Jingjing Yang
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your ... |
51a776af86a6c20034851dcedc7197390a237b1da85b497632e76beb5f48c22f | C/C++ | 1,898 | 72 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
dbb20cd2c1cf5e1deea916e5fc5d1277c5509b72d28c6585bd93cd5007854563 | C/C++ | 1,908 | 72 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
b7dc6cda8d5e9dc653a49a906ce97e45cb83e570e0f0adda8085fda01d174794 | C/C++ | 1,910 | 57 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
9e9ad4fe3999405faa7e3d539fbdf345faf5d48e757de93e285d8d4097c45e7c | C/C++ | 1,917 | 58 | /* bam_ampliconclip.h -- shared functions between amplicon clip/stats
Copyright (C) 2020-2021 Genome Research Ltd.
Author: James Bonfield <jkb@sanger.ac.uk>
Permission is hereby granted, free of charge, to any person obtaining a copy
of this software and associated documentation files (the "Software"), to d... |
8b9547309fc0e5819265c18c36fcaf72d1d524cc463de35d7cc50ba15a7e7cfa | C/C++ | 1,919 | 76 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
56c04f6a4ea9197bc21b52260fa3fb67fff64a1eb7d2957c72a254b30102b663 | C/C++ | 1,924 | 64 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
25fd432ee1fade1d93aa912540e9691d18db1f6b9fb66513da33d338d2c550a6 | C/C++ | 1,925 | 38 | /*
* Copyright <2012> <Vincent Le Guilloux,Peter Schmidtke, Pierre Tuffery>
* Copyright <2013-2018> <Peter Schmidtke, Vincent Le Guilloux>
Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without... |
952b4a5852e6666c5ae774f0647b56e6491b5b93b7a29b3946315c60f8b324f8 | C/C++ | 1,927 | 62 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
22fc82c2e72db8dbb504f69f5b4666bfd96f95bc27892b9b5bc3b53686782d61 | C/C++ | 1,928 | 69 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
01d75397f548034b81bae8f020930baf347c548abf6bb08237ac9226a3c04e3f | C/C++ | 1,929 | 50 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
230682d6b6f82e19627cf476438249a065c25025e2ec0cf7d379a98e3b173d03 | C/C++ | 1,929 | 59 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
c99daa9fd030b17ccef17e361e824443751e745856d92664c127fa17b058f225 | C/C++ | 1,934 | 52 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
038837c93515282c5c691a00907dc1f71f5b3497f6f4cbcbe88da40d8d045c47 | C/C++ | 1,936 | 37 | /*
* Copyright <2012> <Vincent Le Guilloux,Peter Schmidtke, Pierre Tuffery>
* Copyright <2013-2018> <Peter Schmidtke, Vincent Le Guilloux>
Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without... |
22fdc718cfa478f9c91b1e1689d0fcdeb7ebd4b8a4d0b1fe30b5fbe03178526b | C/C++ | 1,938 | 73 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
aec0051d41ff13febafafefd0c790183df94cae5a86d0cc39d7d1864a964feeb | C/C++ | 1,941 | 64 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
b7a34f33106529acc4dfd5748555082d401f9ae22c9467188e6a48c013ba041d | C/C++ | 1,945 | 60 | /*
* Copyright (C) 2010 Regents of the University of Michigan
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later v... |
0cb975e0683f37da705cc7a11ac866062ec8a07c22b760523df47665e6d1a575 | C/C++ | 1,950 | 70 | // ***************************************************************************
// BamWriter.h (c) 2009 Michael Str�mberg, Derek Barnett
// Marth Lab, Department of Biology, Boston College
// ---------------------------------------------------------------------------
// Last modified: 10 October 2011 (DB)
// -----------... |
b061c3bc8a00eb72dc28bcd1855d92793268e22a0828ec97bb56a4ec20ae826d | C/C++ | 1,958 | 54 | /*
Copyright (C) 2014 Sergey Demyanov.
contact: sergey@demyanov.net
http://www.demyanov.net
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any l... |
5b4fee05fe396e7d59faac033e2645bfa9b4de13e8194ea55bb9165b1627fcc2 | C/C++ | 1,961 | 72 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
35fc10602efc0a98fa9406ad241a904e12600c1ab2967da6654401276be2bec7 | C/C++ | 1,963 | 78 | // ***************************************************************************
// HostInfo_p.h (c) 2011 Derek Barnett
// Marth Lab, Department of Biology, Boston College
// ---------------------------------------------------------------------------
// Last modified: 10 November 2011 (DB)
// ----------------------------... |
9386da0e092a22f768135dc6d0c45fff137f5025b2c1b32b9960c5b2ffb10701 | C/C++ | 1,963 | 55 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
08e1a5f78d8facbdcd14b58f19a07419ea90382e245a5be2e60191f1c07af3e9 | C/C++ | 1,964 | 73 | /*
* Copyright (C) 2010 Regents of the University of Michigan
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later v... |
8fd84e8b62e8dc6c8efc7a8389c34f2b952c83454e290a56d79c97e7db0e2b5c | C/C++ | 1,965 | 62 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
b05eceaf8e7f9b2ac72975d79ca755739ec6820172b840556bf2514fe3c5be8f | C/C++ | 1,969 | 58 | /*
* Copyright (C) 2010-2011 Regents of the University of Michigan
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any la... |
182dcd3c3e067fef68393242012a7e74e2455c784c70e62ffea17604418f3379 | C/C++ | 1,970 | 77 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
a84187e65d20542c92041797ad1be1b6e3ae10752ad27f6987a8f8f5540e4afc | C/C++ | 1,970 | 72 | /*
* Copyright (C) 2010 Regents of the University of Michigan
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later v... |
cc5556af4bfeec7ddc734f8e99e61dd43400bc36c673d3d3d746ece75fa22636 | C/C++ | 1,973 | 68 | #include <stdlib.h>
#include <gsl/gsl_spline.h>
/* vectors smaller than this are not normalized */
#define NORM_EPSILON 1E-12
enum proj_side {
TOP,
BOTTOM
};
struct interp_params {
float *rdepth; // relative depth
float *x,*y,*z; // orientation field
size_t nx; // matrix X dimension
size_t n... |
861b6b2e9656a32f8adb9123aaea1892ae92710933947df26967002f8c0c6f81 | C/C++ | 1,974 | 53 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
c33441788531ff45eee4ad2cbe3417a558bd8dc64a8dd6efc446795ed7af5746 | C/C++ | 1,976 | 41 | /*
* Copyright <2012> <Vincent Le Guilloux,Peter Schmidtke, Pierre Tuffery>
* Copyright <2013-2018> <Peter Schmidtke, Vincent Le Guilloux>
Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without... |
e42981c55b52886bf5934943a0e9bb5f6c75832de70dc9200c71ebe87132323f | C/C++ | 1,979 | 47 | /*
* Copyright <2012> <Vincent Le Guilloux,Peter Schmidtke, Pierre Tuffery>
* Copyright <2013-2018> <Peter Schmidtke, Vincent Le Guilloux>
Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without... |
8fecef705d49bb27e86e5521a4e2b9ca9f87aca11814816aede5f02fce8997d9 | C/C++ | 1,984 | 56 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
4998dcc8fe661e1896f906600c242c3636a75a76e7ebb0c643204c11a5f2a4a7 | C/C++ | 1,986 | 85 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
bbd8a1e016648fd4084110f2d5fe0ec0f926515c1b2c6bfd7ba0b42322c7a7e9 | C/C++ | 1,993 | 67 | #pragma once
#include <SDL3/SDL.h>
#include <vulkan/vulkan.hpp>
struct [[maybe_unused]] Extent2D {
uint32_t width;
uint32_t height;
};
/**
* @brief Class representing a window in RAYX-UI.
*
* This class is responsible for window creation, handling events and resizing,
* as well as surface creation for V... |
7e200f4561a3a99cacca4f6de72fc01ba99cfd8e215cbd9637887f4a623bd580 | C/C++ | 2,000 | 76 | /************************************************************************/
/* Public implementation follows */
/************************************************************************/
/*--- Defines ----------------------------------------------------------*/
/* None */
/*--- Types -------------------------... |
375d76a8509e440f6e4cd90a989ed357fba52c26ccecd96dc2e8908d1896b4e9 | C/C++ | 2,002 | 76 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
d80c221b1053eb9ec9dea4145192f156eba86d82c01b6dda9794ac3144bf2523 | C/C++ | 2,007 | 64 | /*
* Copyright (C) 2010 Regents of the University of Michigan
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later v... |
dd013e8fb75edd9818160ee49f46141263b94689a87b2f90634062b233c40533 | C/C++ | 2,007 | 40 | /*
* Copyright <2012> <Vincent Le Guilloux,Peter Schmidtke, Pierre Tuffery>
* Copyright <2013-2018> <Peter Schmidtke, Vincent Le Guilloux>
Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without... |
ee7c2e8e7056c3b1cb1a71ff1bf14cf43d9d6bd87a9bc50360164a20df92525e | C/C++ | 2,007 | 73 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
0d4c8a0815d3ecdcfa645791f8214e96e06f6d7e415073ffdaf1333d1ca66ba1 | C/C++ | 2,008 | 74 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
ec2ea4b7c49ae869d09c1317233c124c7553afbfeb7b77b6d929a3887cf5bc59 | C/C++ | 2,012 | 51 | //
// statedata.h
// MorPhy2
//
// Created by mbrazeau on 26/04/2017.
// Copyright © 2017 brazeaulab. All rights reserved.
//
#ifndef statedata_h
#define statedata_h
#include <limits.h>
#include <string.h>
#include <stdbool.h>
#include <ctype.h>
#define VALID_NEXMAT_PUNC "{}();"
#define VALID_XREAD_MATPUNC "[... |
501a12af353a81032131497dc30039192176957d34de0186f3965439e61861e0 | C/C++ | 2,020 | 42 | /*
* Copyright <2012> <Vincent Le Guilloux,Peter Schmidtke, Pierre Tuffery>
* Copyright <2013-2018> <Peter Schmidtke, Vincent Le Guilloux>
Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without... |
9f8c844b93c526d0528ede72c9964a4d578be4f5db5485ee3a39a302c8261026 | C/C++ | 2,022 | 58 | /*
* Copyright (C) 2010 Regents of the University of Michigan
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later v... |
2d21c8e36c449d44631c943f2f79055a488018123c483a129eaae87cfba6f14f | C/C++ | 2,048 | 88 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
3a79ee81c939151388d74e5c54e2f8bf098a94749e62bd8b8e06dcae465fdd8a | C/C++ | 2,048 | 88 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
1241295a912b798f2412a0940410ec1cd8c162dad306af29561663af5c71a4a7 | C/C++ | 2,050 | 55 | #pragma once
#include <memory>
#include <vector>
#include "BundleHistory.h"
#include "Rays.h"
/**
* @brief Creates a grid representing the footprint of rays within a specified range.
*
* This function takes a vector of rays, along with the minimum and maximum x and z coordinates,
* and the number of cells in the... |
4cda40e95be8024dc5036acef60b3906433d8880bd2ab1730e703d574f4db340 | C/C++ | 2,051 | 59 | /* bam2bcf.h -- variant calling.
Copyright (C) 2010-2012 Broad Institute.
Copyright (C) 2012-2014, 2019, 2021 Genome Research Ltd.
Author: Heng Li <lh3@sanger.ac.uk>
Permission is hereby granted, free of charge, to any person obtaining a copy
of this software and associated documentation files (the "Sof... |
97d61332258f67aa17f635233f674d1ddd4a6dfe41364838b7dd0f3fe1ae150c | C/C++ | 2,051 | 75 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
357a8d7e632754967932927672e923842570f0293d169af0520144cee2b3d3ce | C/C++ | 2,063 | 63 | //
// Basic instrumentation profiler by Cherno
#pragma once
#include <algorithm>
#include <chrono>
#include <fstream>
#include <iostream>
#include <string>
#include <thread>
#include "Core.h"
namespace rayx {
extern bool RAYX_API BENCH_FLAG;
class RAYX_API InstrumentationTimer {
public:
InstrumentationTimer(... |
0d7937c782f20c556ca3b3cdffb7ace8b8d4d8ac12438579696f6765565fa6bc | C/C++ | 2,065 | 80 | /*
* Copyright (C) 2010 Regents of the University of Michigan
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later v... |
14ce9be2e30951ea565757943dfce65a874377c3e0edfe7b0e96a7dcc8a1d682 | C/C++ | 2,066 | 52 | //
// statedata.h
// MorPhy2
//
// Created by mbrazeau on 26/04/2017.
// Copyright © 2017 brazeaulab. All rights reserved.
//
#ifndef statedata_h
#define statedata_h
#include <limits.h>
#include <string.h>
#include <stdbool.h>
#include <ctype.h>
#define VALID_NEXMAT_PUNC "{}();"
#define VALID_XREAD_MATPUNC "[... |
0bf094ca52a56888fcdc39390d802f1ec1ac895bd5a4d3ad10bb99eb7f84022f | C/C++ | 2,067 | 74 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
325d8ac3e7d59bd3335efbd21e5c9085c2d40134684584114bc52292d7974f67 | C/C++ | 2,069 | 77 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
6515075ebcf6dba8b3eaff189c6265098c9eab5bb79f56cff64d018114ddfff2 | C/C++ | 2,081 | 48 | /*
* Copyright <2012> <Vincent Le Guilloux,Peter Schmidtke, Pierre Tuffery>
* Copyright <2013-2018> <Peter Schmidtke, Vincent Le Guilloux>
Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without... |
abccb2fa0df5802c68be32220c71ea585ac943745f3f8e838a01af3a8dc35761 | C/C++ | 2,081 | 71 | /*
* Copyright (C) 2010 Regents of the University of Michigan
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later v... |
ad9ff37820136696e9590bc957e273eee096bb9da7f2084387972066ccb29bd7 | C/C++ | 2,082 | 52 | /*
* Copyright <2012> <Vincent Le Guilloux,Peter Schmidtke, Pierre Tuffery>
* Copyright <2013-2018> <Peter Schmidtke, Vincent Le Guilloux>
Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without... |
31c7a6393ba10109127b27f4f5f6997c80f255eda9bf6339225bf63fd66a662a | C/C++ | 2,083 | 60 | /*
* Copyright (C) 2010 Regents of the University of Michigan
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later v... |
a4fd253ee8b2d5c05e035974c79d58d3979908de59dec3046a82f036b52fc161 | C/C++ | 2,087 | 89 | /**
* Copyright (c) Facebook, Inc. and its affiliates.
*
* This source code is licensed under the MIT license found in the
* LICENSE file in the root directory of this source tree.
*/
/**
* This is the basic class of data parsing.
* It provides essential functions as follows:
* - parse(input, output):
* ta... |
8833045927abff9716d65b3a5aebfd0fc61cb447e4f9d7ffcf90d45dc28e94a4 | C/C++ | 2,090 | 76 | #pragma once
#include "Core.h"
#include "Variant.h"
namespace rayx {
// Cutout types:
// a subset of points of the XZ-plane. used to limit the potentially infinite surfaces.
// note that the first 3 need to be RECT; ELLIPTICAL; TRAPEZOID in order to be compatible with `geometricalShape` from Ray-UI.
enum class Cutou... |
93004fdcb1c71f0cad596fa887c960680c7785ec594a659e5ec0a16010859946 | C/C++ | 2,096 | 75 | #pragma once
#include <glm.hpp>
#include <string>
struct Camera {
alignas(16) glm::mat4 view = glm::mat4(1.0f);
alignas(16) glm::mat4 proj = glm::mat4(1.0f);
alignas(4) float n = 0.0f;
alignas(4) float f = 0.0f;
alignas(4) uint32_t isOrtho = 0;
};
class CameraController {
pu... |
50118636839950a71e87c0d894cdc837804227cadbb7a337f40fad4e4dadaa94 | C/C++ | 2,099 | 78 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
2c169b595c416e11ef380ef0121b8ce1acdf8bb0574ba220085d7a32afec3992 | C/C++ | 2,103 | 64 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
c7cc8c075479ac0b6cb877d75de000d4891399c08e3a365581c15ce063d40c2e | C/C++ | 2,105 | 40 | /*
* Copyright <2012> <Vincent Le Guilloux,Peter Schmidtke, Pierre Tuffery>
* Copyright <2013-2018> <Peter Schmidtke, Vincent Le Guilloux>
Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without... |
4947917bef502cd69c33904a523552b0ec666af2e20f4b4041c4b21c99cb4088 | C/C++ | 2,118 | 53 | /*
* Copyright (C) 2010 Regents of the University of Michigan
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later v... |
9e6fe7195b65910ea87b87787748b0d1b23b5aab1fda40004241dac311dfb44a | C/C++ | 2,118 | 57 | /*
* Copyright (C) 2010 Regents of the University of Michigan
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later v... |
84386e7677a7c567a8418cd86a2d8af3e4b96a84a15559891110b701ca0e6763 | C/C++ | 2,125 | 77 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
6125fe16f630bb1ded1398750ffe373d9f28aeb748604c63dd49ee5f2886267d | C/C++ | 2,130 | 32 | #pragma once
#include "Collision.h"
#include "Core.h"
#include "InvocationState.h"
#include "Ray.h"
namespace rayx {
/// Each `behave*` function gets a `Ray ray` (in element-coords), the element itself, a randomness counter and the `Collision col`.
/// `col.hitpoint` expresses where the given ray will hit the elemen... |
a46f9c6bd34ba60af1cbd4579b81950da184df5508004f0aad4bbf8b0a6498b1 | C/C++ | 2,133 | 51 | // ***************************************************************************
// BamIndexFactory_p.h (c) 2011 Derek Barnett
// Marth Lab, Department of Biology, Boston College
// ---------------------------------------------------------------------------
// Last modified: 10 October 2011 (DB)
// ----------------------... |
42c057536b2a903aad1e63ad2d2f8b20ff0661834a7c7685400fe5e60fe4ab5d | C/C++ | 2,134 | 51 | #pragma once
#include <memory>
#include <string>
#include <vector>
#include "Core.h"
#include "DeviceConfig.h"
#include "DeviceTracer.h"
#include "Rays.h"
// Abstract Tracer base class.
namespace rayx {
// this value is picked in a 'good' way if it can divide number of rays without rest. for a number of rays picked... |
2eff99a7e03c88ad1c539fdff0d4f994812ffbfb7a8e99887e63ab06fc65da08 | C/C++ | 2,135 | 95 | /*
* def,table2.h
* declarations
*/
#include <string.h> /* for memset */
#define mymod(k,K) ((k) - (K) * floor((k) / (double) (K)))
#define iround(x) floor(x + 0.5)
/* interp2_table1_for.c */
extern void interp2_table0_complex_per(
const double *r_ck, /* [K1,K2] in */
const double *i_ck,
const int K1,
const int K2,
... |
59fef32181fcf3f9a10b47afaf2df35aabc4be87a0b8384a893f6b0107b24357 | C/C++ | 2,135 | 86 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
7d3e16a4e0fe72adf9c319f99ad13d5c8c30e2304cfd4912d6ab3c0328768dfb | C/C++ | 2,135 | 57 | #pragma once
#include "Complex.h"
#include "InvocationState.h"
namespace rayx {
/// Both of these structs are used to effectively calculate the Refractive Index of some material when hit by a photon with a particular m_energy.
/// The PalikEntry represents the the complex-valued refractive index directly as n + ik.
... |
2df53427445b8e20661af70e000d8792906ecff17dec650843db96d50ac6db3e | C/C++ | 2,136 | 81 | // ***************************************************************************
// bamtools_global.h (c) 2010 Derek Barnett
// Marth Lab, Department of Biology, Boston College
// ---------------------------------------------------------------------------
// Last modified: 10 October 2011 (DB)
// ------------------------... |
4c98c5f30b0f18badcb3e883115c723ff4a37a534db9cae49543567565102e79 | C/C++ | 2,150 | 73 | // ***************************************************************************
// BamHeader_p.h (c) 2010 Derek Barnett
// Marth Lab, Department of Biology, Boston College
// ---------------------------------------------------------------------------
// Last modified: 18 November 2012 (DB)
// ---------------------------... |
aa296ac8a644c00237d3b586f3a1b7a37642699b2e021ff2bd49420c49efbd72 | C/C++ | 2,151 | 51 | #pragma once
#include <variant>
#include "Core.h"
#include "DatFile.h"
namespace rayx {
enum class SpreadType { HardEdge, SoftEdge, SeparateEnergies }; // default WhiteBand
enum class EnergyDistributionType { File, Values, Total, Param }; // default ET_VALUES
/// Describes a __uniform__ distribution over the i... |
e478fb636ab918195186ff365d168a35f22b0bdf2efac1588c9c36a026e4930f | C/C++ | 2,156 | 69 | /*
* Copyright (C) 2012 Regents of the University of Michigan
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later v... |
6aa73931e97e79f0d288c05e9fd5f19fa5ea6c9fa373202b55a5aaadb8da95b5 | C/C++ | 2,164 | 70 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
92817040074c1c8e96a691ac4f68d7fae696c7d0bbbd62cdce007b79e0fd45bb | C/C++ | 2,164 | 87 | /*
* GPExpand_types.h
*
* Code generation for function 'GPExpand'
*
* C source code generated on: Sun Aug 23 01:10:53 2015
*
*/
#ifndef __GPEXPAND_TYPES_H__
#define __GPEXPAND_TYPES_H__
/* Include files */
#include "rtwtypes.h"
/* Type Definitions */
#ifndef typedef_ResolvedFunctionInfo
#define typedef_Resolv... |
f0b9b949201a4f4f4eb5e7356d5400705728e6227d6a24d7b0ef4f0a8eef5ae9 | C/C++ | 2,168 | 76 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
a83b2b6792c39a461cbb8eb358b20cfd72b5463c74cbb084730f988fa6ddd6e9 | C/C++ | 2,174 | 62 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
14d32e1cace2e4e56a5a86b793ebb45cbba7239cde4c5eaa683efb6cff18f8c1 | C/C++ | 2,176 | 72 | /*
* Copyright (C) 2010 Regents of the University of Michigan
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later v... |
6fe87eef63d32a2d23cd2cb658bd7a03e68f96655da6d0de769369d8f5771f97 | C/C++ | 2,181 | 39 | /*
* Copyright <2012> <Vincent Le Guilloux,Peter Schmidtke, Pierre Tuffery>
* Copyright <2013-2018> <Peter Schmidtke, Vincent Le Guilloux>
Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without... |
a53ca6072140d0b60252fa2e45f59b928301be25588b3a05cf7cacc165b3afb8 | C/C++ | 2,185 | 89 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
eb712d8330b84b85843a79f3d007146929bdf6435bf3561d43f579a41218a18b | C/C++ | 2,197 | 102 | /****************************************************************************
**
** Copyright (c) 2008-2015 C.B. Barber. All rights reserved.
** $Id: //main/2015/qhull/src/qhulltest/RoadTest.h#2 $$Change: 2062 $
** $Date: 2016/01/17 $$Author: bbarber $
**
****************************************************************... |
d82b9ed6ae5444e4806ff53bc523633637e2acf30d1dce6d094fcd2d11033344 | C/C++ | 2,202 | 70 | /*
Copyright (C) 2014 Sergey Demyanov.
contact: sergey@demyanov.net
http://www.demyanov.net
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any l... |
02ae81907cd8501c5806b9fb143099a0cc5e614041c2fb75e02416b620ed970e | C/C++ | 2,210 | 83 | /**
* Copyright (c) Facebook, Inc. and its affiliates.
*
* This source code is licensed under the MIT license found in the
* LICENSE file in the root directory of this source tree.
*/
#pragma once
#include "utils/args.h"
#include "dict.h"
#include "matrix.h"
#include "parser.h"
#include "doc_parser.h"
#include "... |
cf3b1cdca9eef2972a2b12bff93d1c1d1dd93e48caba03c12126a2bd6ad8ff2a | C/C++ | 2,214 | 49 | /*
* Copyright <2012> <Vincent Le Guilloux,Peter Schmidtke, Pierre Tuffery>
* Copyright <2013-2018> <Peter Schmidtke, Vincent Le Guilloux>
Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without... |
ac289de8ce3b60efc9df05df268bc352303bc41abcdac252e1f19c48f5aecbf6 | C/C++ | 2,216 | 90 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
5a42ca047efeb9e1a14a0bb2e6318044048453a4d9fbf8c536db0bcc8cff144c | C/C++ | 2,240 | 69 | /* The MIT License
Copyright (c) 2008-2010 Genome Research Ltd (GRL).
Permission is hereby granted, free of charge, to any person obtaining
a copy of this software and associated documentation files (the
"Software"), to deal in the Software without restriction, including
without limitation the rights t... |
4e1b5876f2f9f47155ee477a423b166a65539f874e4adf74ef98ac151c7714c0 | C/C++ | 2,247 | 54 | // The shader-internal constants are mostly defined in this file.
#pragma once
#include "Core.h"
#include "EventType.h"
#include "ImageType.h"
namespace rayx {
/// inverse nanometer-electron volt relationship / reziprocal factor
constexpr double INV_NM_TO_EVOLT = 1239.841984332002622;
constexpr double PI = 3.14159... |
a7a48aab6774fd58b2379f95a54ee424bd746f80f2487ec4e19a83ddd2a628d5 | C/C++ | 2,249 | 76 | // ***************************************************************************
// BamWriter_p.h (c) 2010 Derek Barnett
// Marth Lab, Department of Biology, Boston College
// ---------------------------------------------------------------------------
// Last modified: 25 October 2011 (DB)
// ----------------------------... |
12180088caee4eb96a3f4bf68b73df7a540a7e1f777f0fc13e985cb10effb43d | C/C++ | 2,251 | 107 | /*
* Copyright (C) 2010 Regents of the University of Michigan
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later v... |
cd196e0e8ee9d2705ca0a3ac92d756e0c1148da551849f2be36d6468e04e392f | C/C++ | 2,256 | 71 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
26a7892924713f197b3733a82234a6664e45112a845e4cbb38acb0e1cd361575 | C/C++ | 2,260 | 79 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
e6016a58ef1fb0b17ee1276d730fc9ba4dcbc8471776fa9297bae9b3d91c79b9 | C/C++ | 2,261 | 64 | // ***************************************************************************
// SamProgram.h (c) 2011 Derek Barnett
// Marth Lab, Department of Biology, Boston College
// ---------------------------------------------------------------------------
// Last modified: 10 October 2011 (DB)
// -----------------------------... |
7840204c82402e67464ddf365d42f65bae4238b69fec4a86e37596fdf4dd4f8e | C/C++ | 2,266 | 74 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
ab1193ae70490e33b3fc12a6954485045726252a9ba36856a20129d6eea8cc57 | C/C++ | 2,266 | 90 | /**
* Copyright (c) Facebook, Inc. and its affiliates.
*
* This source code is licensed under the MIT license found in the
* LICENSE file in the root directory of this source tree.
*/
/**
* The implementation of dictionary here is very similar to the dictionary used
* in fastText (https://github.com/facebookres... |
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