sha256 stringlengths 64 64 | language stringclasses 28
values | size int32 1 491k | lines int32 1 23.2k | content stringlengths 1 200k |
|---|---|---|---|---|
66025baee0535f00031ae9496f9b9810180a586276d92a402cc7b9cfd8a2b9ab | C/C++ | 2,853 | 125 | /*
* Copyright (C) 2000-2007 Goncalo Abecasis
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* T... |
de515074ca8c8317723f6fec59c56d71006c62c14038700a2aa0a79c985ec11c | C/C++ | 2,856 | 62 | /*
* Copyright <2012> <Vincent Le Guilloux,Peter Schmidtke, Pierre Tuffery>
* Copyright <2013-2018> <Peter Schmidtke, Vincent Le Guilloux>
Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without... |
5482d07e5dee3a0aeef9272cb817eb06bceea9fbe488119508c35969a8dc4f61 | C/C++ | 2,860 | 70 | /* bedidx.h -- BED file indexing header file.
Copyright (C) 2017, 2026 Genome Research Ltd.
Author: Valeriu Ohan <vo2@sanger.ac.uk>
Permission is hereby granted, free of charge, to any person obtaining a copy
of this software and associated documentation files (the "Software"), to deal
in the Software witho... |
66b94e880b8a659a1f2ec00b3ed3a7e4fec25f5d17bcedcdd64f57ecb2abc91e | C/C++ | 2,860 | 77 | /****************************************************************************
**
** Copyright (c) 2009-2015 C.B. Barber. All rights reserved.
** $Id: //main/2015/qhull/src/libqhullcpp/QhullPointSet.h#4 $$Change: 2079 $
** $DateTime: 2016/02/07 17:43:34 $$Author: bbarber $
**
********************************************... |
7d07de3cb5a325f174b34a78cd5771f9b5d9838985c93177dfd9384ac59affa6 | C/C++ | 2,875 | 76 | /* samtools.h -- utility routines.
Copyright (C) 2013-2015, 2019, 2023, 2026 Genome Research Ltd.
Author: Petr Danecek <pd3@sanger.ac.uk>
Permission is hereby granted, free of charge, to any person obtaining a copy
of this software and associated documentation files (the "Software"), to deal
in the Software... |
877fec6ff8829d2d397e525220f82335e7bf6db408028003b8e60e0dac26c331 | C/C++ | 2,875 | 107 | #ifndef PROPCA_MATMULT_H_
#define PROPCA_MATMULT_H_
#include "genotype.h"
#include <Eigen/Dense>
#include <Eigen/Core>
using namespace Eigen;
//typedef Matrix<float, Dynamic, Dynamic, RowMajor> MatrixXdr;
//typedef Matrix<double, Dynamic, Dynamic, RowMajor> MatrixXdr;
#ifdef USE_DOUBLE
typedef Eigen::Matrix<double,... |
9c18cb317e197120430335d45073585cfd2249bc1a8f553947bbaacf09ac40cb | C/C++ | 2,875 | 107 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
92e51d3e2773f9ddeace771f655218d13a85f9b1d058532d8839adc4a6638a2e | C/C++ | 2,879 | 88 | /*
Bayesian Functional GWAS --- MCMC (bfGWAS:MCMC)
Copyright (C) 2016 Jingjing Yang
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your ... |
f3380462687e8a188ab008edcdadd0796d0032dd8f8522112cee7037ceff94e2 | C/C++ | 2,884 | 112 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
89ef60c4d640e51c71ee1718a1390633b20bdfce300651caa9b27872dd01d91f | C/C++ | 2,890 | 76 | /*
* Copyright (C) 2011 Regents of the University of Michigan
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later v... |
edfc6155bc261cfa9c6c7d577ca39f009c883c7325dbddb2f43f1890e5a7b41d | C/C++ | 2,902 | 66 | //
// morphy.h
// MorPhy2
//
// Created by mbrazeau on 23/04/2017.
// Copyright © 2017 brazeaulab. All rights reserved.
//
#ifndef morphy_h
#define morphy_h
#ifdef DEBUG
#include <stdio.h>
#define dbg_printf(...) printf(__VA_ARGS__)
#else
#define dbg_printf(...)
#endif
#include <stdlib.h>
#include <assert.h>
#in... |
61f1a1e1780614fc30b8301666889143c71151cc01ebb588f1fc9231ded37a32 | C/C++ | 2,922 | 93 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
e6f01305e2be08587c4fda9aff5c1fb7ef9bb601f3899a114e06b9b45f19eb23 | C/C++ | 2,929 | 77 | #pragma once
#include <cstdint>
#include "Core.h"
namespace rayx {
/// Internal type for the random counter-based RNG
using RandCounter = uint64_t;
/*
* Title: "Squares: A Fast Counter-Based RNG"
* Author: Bernard Widynski
* Date: November 24, 2020
* URL: https://arxiv.org/pdf/2004.06278.pdf
*/
// generates 6... |
6a73583308c4bac0f723e2bd0d3426760a8a9ec770bbed30b2689ae0a347b3be | C/C++ | 2,930 | 97 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
c049ffa5a9978245592fb47bbe5857e9caacc84b5c5035c279098d3440332a01 | C/C++ | 2,944 | 97 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
dcb6f422c699f6d0119b070005e70012a754aa9af500726bf8a484368456b3d3 | C/C++ | 2,950 | 85 | // ***************************************************************************
// SamSequenceDictionary.h (c) 2010 Derek Barnett
// Marth Lab, Department of Biology, Boston College
// ---------------------------------------------------------------------------
// Last modified: 16 October 2011
// -----------------------... |
1a8cbc6988b90d6a8df771772b52f3b7481c1e80d163f1971aee3c5ed3e1976f | C/C++ | 2,959 | 88 | #pragma once
#include <memory>
#include <unordered_map>
#include <vector>
#include "Device.h"
class DescriptorSetLayout {
public:
class Builder {
public:
explicit Builder(Device& Device) : m_Device{Device} {}
Builder& addBinding(uint32_t binding, VkDescriptorType descriptorType, VkShader... |
d52be8d8dfadaa81bbfddfc85bcd2ba55e8495be134763a8f23d3531eabfb573 | C/C++ | 2,962 | 117 | // ***************************************************************************
// HostAddress_p.h (c) 2011 Derek Barnett
// Marth Lab, Department of Biology, Boston College
// ---------------------------------------------------------------------------
// Last modified: 10 November 2011 (DB)
// -------------------------... |
a45c641986c07475d30f9fc8ae63f1455dc9e65055d6847951388729ca12cdde | C/C++ | 2,976 | 106 | /*
* Copyright (C) 2010 Regents of the University of Michigan
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later v... |
ec38d104dec8b380bc6c45235f14e61ab033a179f49d51bece672b23582586af | C/C++ | 2,978 | 85 | #pragma once
#include <vulkan/vulkan.h>
#include <filesystem>
#include <memory>
#include "GraphicsCore/Device.h"
class Buffer;
class Texture {
public:
Texture(const Device& device);
Texture(const Device& device, VkFormat format, VkImageUsageFlags usage, VkImageAspectFlags aspectFlags, VkExtent2D extent);... |
c95319505c8fb366762ff973b97eec845c057b6222795b3044984f856a1f7aef | C/C++ | 2,987 | 85 | // ***************************************************************************
// SamReadGroupDictionary.h (c) 2010 Derek Barnett
// Marth Lab, Department of Biology, Boston College
// ---------------------------------------------------------------------------
// Last modified: 16 October 2011 (DB)
// -----------------... |
241c352c09d2e3142efdb2772c7dd790bdedd60978195b15d75a472cc2a52393 | C/C++ | 2,997 | 104 | // ***************************************************************************
// SamHeaderValidator.h (c) 2010 Derek Barnett
// Marth Lab, Department of Biology, Boston College
// ---------------------------------------------------------------------------
// Last modified: 6 October 2011 (DB)
// ----------------------... |
31a98f3419cac7d12810ef7499aaf46636279d237367d937b00c58671990b885 | C/C++ | 3,013 | 104 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
60289d86925a5fe212fa2bdf2a985db217c82a39c4a7e81962620dbbe1bfb94e | C/C++ | 3,018 | 108 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
296696686262b80366731cb6987ba8d29efc7997c54d2b72b49e1d9bbf839c0e | C/C++ | 3,034 | 87 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
8944d6726151ebdda8bc443da8a8cbfa8f0397ed6bbc58614de87fec62c54a33 | C/C++ | 3,034 | 106 | // ***************************************************************************
// TcpSocketEngine_p.h (c) 2011 Derek Barnett
// Marth Lab, Department of Biology, Boston College
// ---------------------------------------------------------------------------
// Last modified: 8 December 2011 (DB)
// ----------------------... |
9aa47a8e073f8db4206bdf9d7d828ab7121454876f7e5dd41fa74e98a50dd75d | C/C++ | 3,040 | 88 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
0f3e945ae7303748d2419bd5c855b890e6366e3d422c282fc3991175af1ec729 | C/C++ | 3,047 | 144 | /*
* Class for Teensy (Arduino) Serial Communication (header file)
*
* mostly adapted from: http://www.pjrc.com/tmp/host_software/
* alternative: http://playground.arduino.cc/Interfacing/CPPWindows
*
* This class opens one serial connection and controls it.
*
* author: Michael Berger
* German Primate Center
... |
290d7fa0d0918c8e21d6832d1f199356011a0a3260e7aaf43a809cb098e88b7e | C/C++ | 3,048 | 88 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
c1630a4265002a503a9ac89e8899c5725b77ac70c393cd6fa131723cef57c5dd | C/C++ | 3,061 | 104 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
6d4d2c16dcb3a65b5c595eb24dfeca3dd55c02f48e0372f98a7c9c8fdbf39427 | C/C++ | 3,069 | 88 | /*
* Copyright (C) 2010-2011 Regents of the University of Michigan,
* Hyun Min Kang, Matthew Flickenger, Matthew Snyder,
* and Goncalo Abecasis
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General... |
5af4f3122cb4d04f3152d0e3cac10cb5d0cdd7351c4f3216086386923810db8c | C/C++ | 3,075 | 88 | // ***************************************************************************
// RollingBuffer_p.h (c) 2011 Derek Barnett
// Marth Lab, Department of Biology, Boston College
// ---------------------------------------------------------------------------
// Last modified: 7 December 2011 (DB)
// ------------------------... |
7e8e30cbe2d58d7a3b8411ff6f281fdf655aa8de78888f9bbffbc6346f983df0 | C/C++ | 3,078 | 135 | // def,table4.h
// declarations
// Extended 2013-08-02 to 4D by David Johnson, The Ohio State University Wexner Medical Center
#include <string.h> // for memset
#define mymod(k,K) ((k) - (K) * floor((k) / (double) (K)))
#define iround(x) floor(x + 0.5)
// interp4_table1_for.c
extern void interp4_table0_complex_per(... |
596f0787761a3e7b07f01af29d1bfd607cad56986d0edf1d19c7600f6c9fbb6d | C/C++ | 3,080 | 65 | /*
* Copyright (C) 2011 Regents of the University of Michigan
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later v... |
2d4c5044d11cd4996c3d592ef5b27f3e434100b19d1055753a2f055848b57def | C/C++ | 3,106 | 124 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
3e43bce0656a5384dfc0e21173833436f6f65568d255a56ec8af004b2854faec | C/C++ | 3,107 | 118 | #ifndef GENOTYPE_H
#define GENOTYPE_H
#include <random>
#include "storage.h"
#include <Eigen/Dense>
#include <Eigen/Core>
#include <Eigen/LU>
#include <Eigen/SVD>
using namespace Eigen;
using namespace std;
#ifdef USE_DOUBLE
typedef Eigen::Matrix<double, Eigen::Dynamic, Eigen::Dynamic, Eigen::RowMajor> MatrixXdr;
#el... |
4223d1c5d71fcc4dc915ce5a8beb741ef19812d6e54e4d29bb90e427e6b7d075 | C/C++ | 3,121 | 102 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
16ff3357e1dc4d3351aaaebeadb6bb0661f4531f1b1ea659f3c56a9784ca18f7 | C/C++ | 3,132 | 103 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
939941507229da6c6a293f8a20b907cc1226d2aab1665dde84f9bfb4c38dc3ad | C/C++ | 3,140 | 101 | /*
Bayesian Functional GWAS --- MCMC (bfGWAS:MCMC)
Copyright (C) 2016 Jingjing Yang
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your ... |
10a1e2e2a74e60146088603b519f6a25d542ad526510a5350771f2a5be51fa9c | C/C++ | 3,154 | 110 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
5ff844ace7af8958de0e0e02957261d6fbdddcedd4edcfb6e8249acf6f8a2d89 | C/C++ | 3,162 | 93 | /*
* Copyright <2012> <Vincent Le Guilloux,Peter Schmidtke, Pierre Tuffery>
* Copyright <2013-2018> <Peter Schmidtke, Vincent Le Guilloux>
Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without... |
4ce0b76d6955d5834a371e4f61c0774d6b72abc3438182510866d38d763ce3b2 | C/C++ | 3,173 | 108 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
fb17cab51bcd0a67476bc42c03a807a4fbcc0c2f4e53ea34d0108150ca9557fd | C/C++ | 3,181 | 94 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
a1f0352ebd8a9dfd79aefcd148babac5481e2d7b9972566f6d43a740be03f29b | C/C++ | 3,187 | 118 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
128bedbc23df615d9aac5301107a6a3d94b3715479cc87b5eb5f9fd938c42038 | C/C++ | 3,189 | 71 | // ***************************************************************************
// SamReadGroup.h (c) 2010 Derek Barnett
// Marth Lab, Department of Biology, Boston College
// ---------------------------------------------------------------------------
// Last modified: 10 October 2011 (DB)
// ---------------------------... |
0fe012f4f9022a7580f6476ccd83820882a2bfc127c528cfd832721259e67959 | C/C++ | 3,190 | 102 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
3f2d02ea51d8765893fc03ce64a5187e0360e20b9e511f35d8a612b770b7a4b8 | C/C++ | 3,199 | 97 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
76b9afa87c05c65a4ab0d89742d6b90cf3275b8f25b4bc0bd032aba0a1c00367 | C/C++ | 3,206 | 87 | /*
* Copyright (C) 2010 Regents of the University of Michigan
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later v... |
5acd9da25961ba601b728020ffc72a29344aa3c8863643ec8d2ab6a2bf7f44ab | C/C++ | 3,210 | 111 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
8492f4e69d9849b78b79c75ff1010c430dc09fd8a9746fe105d9221dca6d22eb | C/C++ | 3,211 | 111 | /*
Copyright 2010-2011, D. E. Shaw Research.
All rights reserved.
Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions are
met:
* Redistributions of source code must retain the above copyright
notice, this list of conditions, and the f... |
a4b799930ac04823f2245b3619a0a61a4042d370d3212bca7dacdacc51d1829d | C/C++ | 3,214 | 88 | #pragma once
#include <glm.hpp>
#include <vector>
#include "GraphicsCore/Buffer.h"
#include "GraphicsCore/Descriptors.h"
#include "GraphicsCore/Device.h"
#include "GraphicsCore/Texture.h"
#include "Tracer/Tracer.h"
#include "Vertex.h"
struct Triangle {
TextureVertex v1;
TextureVertex v2;
TextureVertex v3... |
90e22ce04dcd995a57f9c24a6fa860917f8822386bbcf06a1a3752a05e4c581d | C/C++ | 3,221 | 105 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
d9f853f8f5a5dbe098aceb5c0f8e0a60b94066e8b7cf3768f773a6a5a00f129c | C/C++ | 3,234 | 101 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
aab0a44ca16e6fb562edc531e1e537425a690187adfc2e0d7b5ae91fe6343004 | C/C++ | 3,239 | 126 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
f91d59eccb7f77f30dba469423734471dbc21944fff0e4ea5241dcda82a460fb | C/C++ | 3,251 | 117 | /************************************************************************/
/* Public implementation follows */
/************************************************************************/
/*--- Defines ----------------------------------------------------------*/
/* None */
/*--- Types -------------------------... |
a8fb93e7446b7659ee36a2d450f28e1f79d2dce38b5e65af2836352019097150 | C/C++ | 3,252 | 106 | #pragma once
#include <vulkan/vulkan.h>
#include <filesystem>
#include <memory>
#include <optional>
#include "Beamline/Beamline.h"
#include "Camera.h"
#include "Debug/Debug.h"
#include "Design/DesignElement.h"
#include "Design/DesignSource.h"
// TODO: Divide this into passed and returned parameters
/**
* UI Param... |
d0640984373f496dd4b42f4f724def28bdc4f5de0643cb257c7cab67a864f4a6 | C/C++ | 3,265 | 103 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
26290686ec0740b8359fd9fbe57c5afc25711f61225d6131cdf162741c5a197b | C/C++ | 3,269 | 84 | #pragma once
#include <list>
#include "LightSource.h"
#include "Shader/Rand.h"
namespace rayx {
struct PsiAndStokes {
glm::dvec4 stokes;
double psi;
};
RAYX_API double get_factorCriticalEnergy();
RAYX_API double get_factorElectronEnergy();
RAYX_API double get_factorOmega();
RAYX_API RAYX_FN_ACC double dipo... |
24128639fa032b7b4b8984b2378cecd09504bd0a3be350ab12349e9b3a3c6531 | C/C++ | 3,293 | 90 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
6ebf6b8a03030b2d1e3031998d104d834ea133d4ebedc9812f1c4a43391bbf8b | C/C++ | 3,303 | 67 | #pragma once
#include <cstdint>
#include "Throw.h"
namespace rayx {
// TODO: doc this enum and all its members
enum class EventType : uint32_t {
Uninitialized = 0,
Emitted = 1,
HitElement = 2,
FatalError = 3,
Absorbed = 4,
BeyondHorizon = 5,
TooManyEvents = 6,
};
RAYX_F... |
cc2307d5341b714df8f5b34875a85171f8e2adad104ff577cf3f6d2d49364928 | C/C++ | 3,304 | 86 | #ifndef SAMPLE_MATCHING_H
#define SAMPLE_MATCHING_H
// BUG-003: Sample ID matching across input files
// This module implements PLINK2-style sample matching by FID/IID
// instead of assuming files are pre-aligned by row position.
#include <string>
#include <vector>
#include <unordered_map>
// Structure to hold FAM f... |
35f1e4679851e81a7f1588dcedac7a3d2334e5a9b3f92a24090288fcdcc56d6f | C/C++ | 3,323 | 106 | // ***************************************************************************
// BamMultiReader_p.h (c) 2010 Derek Barnett
// Marth Lab, Department of Biology, Boston College
// ---------------------------------------------------------------------------
// Last modified: 14 January 2013 (DB)
// -----------------------... |
50540b446e93516ac5378634505b613822dfe6abfa48817241c57b73a3d95007 | C/C++ | 3,348 | 185 | #ifndef VECTORFN_H
#define VECTORFN_H
#include <iostream>
namespace vectorfn {
template <class T>
inline void init(vector<T> &t, T x) {
for (int i = 0; i < t.size(); i++)
t[i] = x;
}
template <class T>
inline void add (vector<T> &t, T x) {
for (int i = 0; i < t.size(); i++)
t[i] += x;
}
template <class ... |
33487033f2e9fca2f9da565dca17f80e7e930df3b2244353be1b20cb15b8ccd0 | C/C++ | 3,351 | 93 | /*
Copyright 2010-2016, D. E. Shaw Research.
All rights reserved.
Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions are
met:
* Redistributions of source code must retain the above copyright
notice, this list of conditions, and the f... |
869b637a743ece3048040444a605de1c8493b9f3140d4b35a2be0e8bb92d11fb | C/C++ | 3,359 | 95 | /*
* Copyright (C) 2010 Regents of the University of Michigan
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later v... |
dbae76bfdb8edd99dd1146561f8eac246a0835a67d2c528ef7f896e989858339 | C/C++ | 3,362 | 98 | /*
* Copyright (C) 2010 Regents of the University of Michigan
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later v... |
ebd30d7d77336b324548af317122586aa756d0060fdefaf86cc58c66d0460e6c | C/C++ | 3,363 | 97 | /*
* Copyright (C) 2012 Regents of the University of Michigan
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later v... |
76e37c22f0d125747c2a283023d65a61b49dda579085804221a61ea3d369cae3 | C/C++ | 3,376 | 107 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
37b3953243526c4d99275fe1ad4a457b2d6cb9b686018ebbbee358c815c6c640 | C/C++ | 3,380 | 88 | /****************************************************************************
**
** Copyright (c) 2008-2015 C.B. Barber. All rights reserved.
** $Id: //main/2015/qhull/src/libqhullcpp/RoadError.h#4 $$Change: 2079 $
** $DateTime: 2016/02/07 17:43:34 $$Author: bbarber $
**
************************************************... |
3064de50ea39c821952af0dd55935ce1766fc420f9002767515ed06dc0344468 | C/C++ | 3,393 | 119 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
b6bb96b4ea55dc809006ce6ec788ac4055beef7adecea6c8deb37102f3e9baa3 | C/C++ | 3,397 | 66 | /*
Bayesian Functional GWAS --- MCMC (bfGWAS:MCMC)
Copyright (C) 2016 Jingjing Yang
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at yo... |
4348672deea12498cca6c4f6aeb8c12b92a81616d7e3e147ad2b611cf8b30f11 | C/C++ | 3,399 | 111 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
9c01a94b71f7cc705dce3653ca9c05516756b799670d2becf288ac8a3c14866d | C/C++ | 3,425 | 99 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
e45a8a9827ae396b0bf7c7773d46788b226b6a44252f18ada6dc728bc1f26c05 | C/C++ | 3,439 | 153 | /*
* Copyright (C) 2010 Regents of the University of Michigan
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later v... |
fd0f1fc192fb82a73aff3cd55096e59dc552f7e54b1167f618a4e96a830da4ee | C/C++ | 3,444 | 126 | /*
* Copyright (C) 2010 Regents of the University of Michigan
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later v... |
c760a63c10f38c904bacac3fd546e496716c12eb0ef756b095a6084230b2f0cf | C/C++ | 3,473 | 86 | /****************************************************************************
**
** Copyright (c) 2009-2015 C.B. Barber. All rights reserved.
** $Id: //main/2015/qhull/src/libqhullcpp/QhullVertexSet.h#2 $$Change: 2066 $
** $DateTime: 2016/01/18 19:29:17 $$Author: bbarber $
**
*******************************************... |
59bf6567b78510d612dcb2e1921374e7e6e1e8208806ed4aa01e5e1fa26a23e2 | C/C++ | 3,484 | 112 | /*
Bayesian Functional GWAS with Summary Statistics --- MCMC (bfGWAS_SS:MCMC)
Copyright (C) 2017 Jingjing Yang
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of th... |
54fc72dddfb3230a6e2238a07f6311a8bb07a0ea3d20cce05eba18e3b8c88680 | C/C++ | 3,488 | 119 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
34413b7793f7992be9f4c100ca67a309d67e7282c8f12a8fc9184a5e58a88624 | C/C++ | 3,489 | 101 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
b0a3671754286ade4ca963c832a7c1b582647f6a3583c3602decd48c18c48fae | C/C++ | 3,491 | 97 | // ***************************************************************************
// SamConstants.h (c) 2010 Derek Barnett
// Marth Lab, Department of Biology, Boston College
// ---------------------------------------------------------------------------
// Last modified: 27 March 2012 (DB)
// -----------------------------... |
f096b36c862cc53545a38287bca8ff8785eb3159ad9314a75b0d4e30f65f35bf | C/C++ | 3,504 | 120 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
82caf0bde3ec121a73a63b8555de11741f70e6d5f2a117432205ff313b0c2ebf | C/C++ | 3,512 | 120 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
d3b4d8c202c63d6ecab122e433ef53625a13c4c78f151fbb5fdc4d1a1abfbd38 | C/C++ | 3,534 | 107 | /* bam_tview.h -- tview subcommand.
Copyright (C) 2008, 2013, 2019 Genome Research Ltd.
Portions copyright (C) 2013 Pierre Lindenbaum, Institut du Thorax, INSERM U1087, Université de Nantes.
Author: Heng Li <lh3@sanger.ac.uk>
Permission is hereby granted, free of charge, to any person obtaining a copy
o... |
d5d79936de69665c2741908087b9a0c4158771d6d08fc6d8f06d66b3d5022b93 | C/C++ | 3,551 | 78 | /*
Bayesian Functional GWAS --- MCMC (bfGWAS:MCMC)
Copyright (C) 2016 Jingjing Yang
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your ... |
5035de1437db9786d05a0125d3a27f81c229500fdf6807aeb6f49c7cc5e68217 | C/C++ | 3,552 | 120 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
63a2c5f2135f775cd56c09568433bf7d5fd8bad6f967d85f1897468af18c781d | C/C++ | 3,572 | 118 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
90a9da0d27872ecd03fc8d69f77aa28806e558b47b6639d945df66926f92e7c1 | C/C++ | 3,575 | 100 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
359602a0513fc5f0c15c6f41a77e71839e4a0181b099a11d6e21f6b596004030 | C/C++ | 3,580 | 134 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
da86aa7d212fcc5fb42e30cc9122508ee27cd0ce97ebee832a0ebcb291dcf373 | C/C++ | 3,590 | 77 | /****************************************************************************
**
** Copyright (c) 2008-2015 C.B. Barber. All rights reserved.
** $Id: //main/2015/qhull/src/libqhullcpp/RoadLogEvent.h#1 $$Change: 1981 $
** $DateTime: 2015/09/28 20:26:32 $$Author: bbarber $
**
*********************************************... |
f465bd83f5a59df182289726912f2f7916d8c423dd3b3b9ba24ccf5a79cb9fb2 | C/C++ | 3,600 | 143 | /*
* Copyright (C) 2010 Regents of the University of Michigan
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later v... |
515a767ff50f7bed53675bbb02326ac2fc63b2f91474e6315697765480e27b18 | C/C++ | 3,625 | 121 | // ***************************************************************************
// BamReader_p.h (c) 2010 Derek Barnett
// Marth Lab, Department of Biology, Boston College
// ---------------------------------------------------------------------------
// Last modified: 18 November 2012 (DB)
// ---------------------------... |
275d2479fa6ad431c84f999cef1c239e352d48449d65de97c24bad3c5bcc158d | C/C++ | 3,647 | 120 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
f699ee0999d83a169468c61023b99267f8434ba9a796811b697f8cb003b79af3 | C/C++ | 3,650 | 135 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
95c58c80b965cf88b5a8c6f1f03a98b7addca01f9f11b67c15a64ef2ecda325c | C/C++ | 3,660 | 135 | // ***************************************************************************
// HttpHeader_p.h (c) 2011 Derek Barnett
// Marth Lab, Department of Biology, Boston College
// ---------------------------------------------------------------------------
// Last modified: 13 January 2012 (DB)
// ---------------------------... |
07d41f32323fa62db47ad66375d8e84ca678650011b8c6ce2864a76101aef003 | C/C++ | 3,661 | 106 | /*
* Copyright (C) 2011-2012 Regents of the University of Michigan,
* Hyun Min Kang, Matthew Flickenger, Matthew Snyder,
* and Goncalo Abecasis
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General... |
ae7234ac9b741f1a19ce658bb77bb56f1879a362aedab16c7ef48a52b706cecb | C/C++ | 3,678 | 132 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
3c49d6029750c33491154bbfab332777ff3732cd57c04312f4c68260d7396a91 | C/C++ | 3,681 | 103 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
c50d8fa1408c91cc0a8d0425b5f1838704d20941aec3bb9b17cf3411a98e86d4 | C/C++ | 3,681 | 98 | /*
* Copyright (C) 2010-2012 Regents of the University of Michigan
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any la... |
4a3ce00e36afdc3833e9904409240040a73be2a2322277b936b591534f5938b8 | C/C++ | 3,688 | 73 | #include "Constants.h"
#include "Efficiency.h"
#include "Utils.h"
namespace rayx {
/**
* @brief Calculates the transmission through a single thin film layer using Fresnel equations.
*
* This function computes the intensity transmission coefficient (T) for a plane wave incident on
* a single dielectric or absorbin... |
a0bb1d46d30edeaa57cf350cd67d4c791c866c114bd9ad643d993ca42bc6931c | C/C++ | 3,708 | 119 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
Subsets and Splits
No community queries yet
The top public SQL queries from the community will appear here once available.