sha256 stringlengths 64 64 | language stringclasses 28
values | size int32 1 491k | lines int32 1 23.2k | content stringlengths 1 200k |
|---|---|---|---|---|
36679110e1530c282ec0db54de150d560085cedde0ce8184ea84e7a8463fed03 | C/C++ | 3,711 | 81 | /*
* Copyright <2012> <Vincent Le Guilloux,Peter Schmidtke, Pierre Tuffery>
* Copyright <2013-2018> <Peter Schmidtke, Vincent Le Guilloux>
Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without... |
31ebb80043e88a9f9008651a2b0d0681de16248b1132bc85aed26650fdf6e557 | C/C++ | 3,717 | 134 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
ee62ea8f936bc3fbc62d79b7bb39bf7098e27a6d9d462cbf21cf8d9a830ac431 | C/C++ | 3,719 | 165 | /*
* Copyright (C) 2010 Regents of the University of Michigan
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later v... |
bc47a2d528f05719872d5d1f8180bf612f0bf7ef34aaa700e9f15fac082005ad | C/C++ | 3,722 | 156 | // ***************************************************************************
// bamtools_variant.h (c) 2010 Derek Barnett, Erik Garrison
// Marth Lab, Department of Biology, Boston College
// ---------------------------------------------------------------------------
// Last modified: 10 October 2011
// -------------... |
5c1da8874b577d202899c29f0e98ad7c9e7a1bf3429830e1c8646bb295eacaeb | C/C++ | 3,726 | 110 | #pragma once
#include <future>
#include "BundleHistory.h"
#include "CommandParser.h"
#include "Design/DesignElement.h"
#include "Design/DesignSource.h"
#include "GraphicsCore/Descriptors.h"
#include "GraphicsCore/Renderer.h"
#include "RayProcessing.h"
#include "Scene.h"
#include "Simulator.h"
#include "UserInterface/... |
18a5051357543192a7a75f6058e576b32d5036f1783c87ea362e3a945c2c8c8a | C/C++ | 3,746 | 83 | /*
* Copyright <2012> <Vincent Le Guilloux,Peter Schmidtke, Pierre Tuffery>
* Copyright <2013-2018> <Peter Schmidtke, Vincent Le Guilloux>
Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without... |
b950d6e182652713dacade3fe4bebf59d894b273de836af8b6796f3ebde6d25d | C/C++ | 3,748 | 90 | /* hts_internal.h -- internal functions; not part of the public API.
Copyright (C) 2015-2016 Genome Research Ltd.
Permission is hereby granted, free of charge, to any person obtaining a copy
of this software and associated documentation files (the "Software"), to deal
in the Software without restriction, includi... |
a801f8f9d1b703b83361a7d0453fa153852a7bf67806c13808ca28ffe3773ad8 | C/C++ | 3,758 | 104 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
ff0075cccb35484c4034135024ac66981115af0eb4d56540a6e6891584bf91a0 | C/C++ | 3,760 | 119 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
5915684b27c2d4c128d6ec5b915806b3af2560e63d5261a6a253620fbff2e488 | C/C++ | 3,761 | 124 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
b4c4848c4b2c21d684b7173966379cea8b60b4fb29573599413d71b848592ba6 | C/C++ | 3,764 | 122 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
2ae62db2352959184ae9e9cd5460ce36c7f3b040830777b03d398e54b02ada27 | C/C++ | 3,772 | 110 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
948963eb67ce306801a98854ab0e77fa7f08521e34a425e785b798a85d0adf56 | C/C++ | 3,772 | 134 | // ***************************************************************************
// TcpSocket_p.h (c) 2011 Derek Barnett
// Marth Lab, Department of Biology, Boston College
// ---------------------------------------------------------------------------
// Last modified: 7 December 2011 (DB)
// ----------------------------... |
781522f0621d40dfcb01e2ae76b0a95e0bd82a48fb712d97fb6035f40d756457 | C/C++ | 3,781 | 129 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
7afc1d2c571ba9c0131b20bbeaf9dd95995ceddd1aba4be02cb139b037d00ae3 | C/C++ | 3,791 | 120 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
a81b2cb1e4b97ded12ebcdee3bc5b29e748b0e93abb44dbb316b3b617a5fd05c | C/C++ | 3,804 | 128 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
19f3bec239af9a1bf02424ccf027d4776b51c4a715f3e1504c8897a9afbe51d6 | C/C++ | 3,805 | 95 | #pragma once
#include <optional>
#include <vector>
#include "Window.h"
struct SwapChainSupportDetails {
VkSurfaceCapabilitiesKHR capabilities;
std::vector<VkSurfaceFormatKHR> formats;
std::vector<VkPresentModeKHR> presentModes;
};
struct QueueFamilyIndices {
uint32_t graphicsFamily;
uint32_t pre... |
0a3b275dbc8fe17b8b95bcbf9656d6ec78f3adb2ab5bbf290215f37f45789c23 | C/C++ | 3,806 | 118 | // ***************************************************************************
// BamReader.h (c) 2009 Derek Barnett, Michael Str�mberg
// Marth Lab, Department of Biology, Boston College
// ---------------------------------------------------------------------------
// Last modified: 18 November 2012 (DB)
// ----------... |
77cd3a5770cc11fa27812b28312b14e4b49cd3ca327459cf2ca63443a687615a | C/C++ | 3,811 | 107 | #pragma once
#include <cassert>
#include <memory>
#include <vector>
#include "Device.h"
#include "FrameInfo.h"
#include "GraphicsCore/Descriptors.h"
#include "Swapchain.h"
#include "Window.h"
class Texture;
/**
* @brief The Renderer class manages the rendering process, including the swapchain, command buffers, and... |
198ab16e0b391200031b0e255fd1a3e69630ba37b569239e8f268635be7763b7 | C/C++ | 3,824 | 122 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
45e7898b4a8476b2c0ab10d43d0aa60c6206e4c9a6f88d9144b55231dbaceb54 | C/C++ | 3,828 | 125 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
a73e2e0f21b28b54bd39b11e276f04108b1bcce75af6b5536207d6e51966abf7 | C/C++ | 3,833 | 116 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
d7e60a3591c5f51f36948795611f844378fbfa7ef35d62375fefc52159a23caf | C/C++ | 3,833 | 144 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
e19f8f66e39d4f0d0a8eb0566f0df52e623f8d8227858d44fda6f20d9d9d417d | C/C++ | 3,835 | 105 | /*
Genome-wide Efficient Mixed Model Association (GEMMA)
Copyright (C) 2011 Xiang Zhou
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at yo... |
b1a1d7d3ec1f95db7812356e8f58839b3b9c58adb26fef8fcb97e8810658fdaa | C/C++ | 3,852 | 97 | /*
* Copyright (C) 2012 Regents of the University of Michigan
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later v... |
7f5800929baf1f336b09aa53032277cfbdaf668fb9fbcfe9ca9cec236f5cc293 | C/C++ | 3,867 | 127 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
8196219b9f6eb2cb1a762ac2f0ef147c303b2e923e980eaea27330b5902f0f26 | C/C++ | 3,867 | 149 | /*
* Copyright (C) 2010 Regents of the University of Michigan
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later v... |
cacdaaf929ac968530d2579b48ec63e980dc0d82213e488913a5a441d3c7e368 | C/C++ | 3,872 | 140 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
1d4fc2b30029d85c26ca69a232f532d316477a9e2d1bb40ad9cd70b491e218a2 | C/C++ | 3,875 | 102 | /*
* Copyright (C) 2010 Regents of the University of Michigan
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later v... |
9501402bf2bb30da2cf3c3e34c1cce1c2f5ee4ad789f7ac42f884e8d8ec23995 | C/C++ | 3,883 | 95 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
b0e8e41231c4c28e124859f7ddcecc6ee6d0b394a52070d4706daa334f1d15b4 | C/C++ | 3,896 | 178 | /*
* Copyright (C) 2010 Regents of the University of Michigan
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later v... |
10d3f327b013d5f1c1d604c6b0b9b17bb525a1e645d16f1c8e20594255fa6f9d | C/C++ | 3,991 | 97 | /****************************************************************************
**
** Copyright (c) 2008-2015 C.B. Barber. All rights reserved.
** $Id: //main/2015/qhull/src/libqhullcpp/QhullFacetSet.h#2 $$Change: 2066 $
** $DateTime: 2016/01/18 19:29:17 $$Author: bbarber $
**
********************************************... |
3afad5b15c55d2bac4f0e2143009fb1cc1f6052ba9cae898185281d1011112a3 | C/C++ | 3,992 | 106 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
9bcbe96987a79249aca0bd1e7c7bf481f3b1cc9560529deb8e567531493e3925 | C/C++ | 4,003 | 118 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
7bf18259035b9706d4ee39ff788a63d42d20303faa31cf624c50691b44a52201 | C/C++ | 4,004 | 161 | /************************************************************************/
/* Public implementation follows */
/************************************************************************/
/*--- Defines ----------------------------------------------------------*/
/* None */
/*--- Types -------------------------... |
531ba7fb0fa9c69c8038c5cfad08c11ba3bc7d57ff694bd2cb6ea8037af7ecbd | C/C++ | 4,010 | 120 | #pragma once
#include <glm.hpp>
#include <memory>
#include <string>
#include "Core.h"
namespace rayx {
class Group;
class DesignSource;
class DesignElement;
/**
* @class BeamlineNode
* @brief Base class for all nodes in the beamline hierarchy (scene/model graph).
*
* This abstract class defines the common inte... |
f329373637d1612edbddc2a58899b96d974adb3fe2d0bf36ee27dc2b7ca11774 | C/C++ | 4,022 | 145 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
576f1bf0bb5870d37eebc8bea54282d781d64e7e2c1b08ef3b04c7fe182c2bcd | C/C++ | 4,024 | 143 | /*
* Copyright (C) 2011 Regents of the University of Michigan,
* Hyun Min Kang, Matthew Flickenger, Matthew Snyder,
* and Goncalo Abecasis
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License... |
98ba581a417e969f7a83baafcf52197bf0264701d05e16785ac98885debda484 | C/C++ | 4,030 | 101 | // Copyright 2024 DeepMind Technologies Limited
//
// AlphaFold 3 source code is licensed under the Apache License, Version 2.0
// (the "License"); you may not use this file except in compliance with the
// License. You may obtain a copy of the License at
//
// http://www.apache.org/licenses/LICENSE-2.0
//
// Unless re... |
472a02f9914707627a6d50a3022a982becc5a3616badfb26a45ac538fb14a115 | C/C++ | 4,053 | 121 | /*
* Copyright (C) 2010 Regents of the University of Michigan
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later v... |
44b42a3fa0655ea9b9a33882d4f8499805bd6e02ce0ec557b0bcd74b8188598a | C/C++ | 4,068 | 124 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
656793a9dc8770594ac3da99d8b2dc937425a9a67269dd695d9632a76e1a8b79 | C/C++ | 4,074 | 131 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
5c360f3606e7041349baa923ff62a661d9fc79e111d03238d6bdaa312271571d | C/C++ | 4,096 | 157 | /*
* Copyright (C) 2010 Regents of the University of Michigan
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later v... |
82e0f5bfc5390847d1046fbcf0c0a26698c11f41604b42a08b0b20c67c8a5fb5 | C/C++ | 4,097 | 147 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
5f2bd2051aea775b7fc72af8b19eeade79e19ced3c5e56b0e527b4317b2af0a5 | C/C++ | 4,115 | 155 | /************************************************************************/
/* Public implementation follows */
/************************************************************************/
/*--- Defines ----------------------------------------------------------*/
/* None */
/*--- Types -------------------------... |
e44cc5808ed4fb0e5260a1a59ad68d4b30ce96af5ad3faa743af9d966717ba32 | C/C++ | 4,174 | 118 | /*
* Copyright (C) 2010-2011 Regents of the University of Michigan,
* Hyun Min Kang, Matthew Flickenger, Matthew Snyder,
* and Goncalo Abecasis
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General... |
b7fc4648f7cfc079aa9aaa4327c774d651a0ff55fcd75b80a0d8eb92bc715c37 | C/C++ | 4,178 | 150 | #pragma once
#include "Beamline/Node.h"
#include "Value.h"
namespace rayx {
class RAYX_API DesignSource : public BeamlineNode {
public:
DesignSource();
DesignSource(std::string name);
~DesignSource() = default;
// Delete copy constructor because shallow copies of DesignMap lead to unexpected behav... |
f37c41bbbbe3a077ff2190ea631af43a79c34a8861a2e9ba4b5738aa1a5c4967 | C/C++ | 4,180 | 85 | /*
* Copyright <2012> <Vincent Le Guilloux,Peter Schmidtke, Pierre Tuffery>
* Copyright <2013-2018> <Peter Schmidtke, Vincent Le Guilloux>
Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without... |
fbf52759c57067e18d8a9bcd570fa17389b2957c79b5cf3f7e974214f1cc4c52 | C/C++ | 4,187 | 84 | #pragma once
#include "Ray.h"
#include "RaysPtr.h"
namespace rayx {
RAYX_FN_ACC
inline int getRecordIndex(const int gid, const int numRecorded, const int gridStride) { return gid + numRecorded * gridStride; }
RAYX_FN_ACC
inline detail::Ray loadRay(const int i, const RaysPtr& __restrict rays) {
return {
... |
4d08a4764215532cabef688efa9dd08745c7e3e879f2a8c0eafa7af0a3975daa | C/C++ | 4,203 | 110 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
e160f1217ae7bede30d60647bf8de08c16e788625bde6af3872e6d8c0c273819 | C/C++ | 4,216 | 115 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
1a624369976fcfb55e977e6da0ff47b081128fe3e26430fdb5687497e5e558d0 | C/C++ | 4,238 | 125 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
89a47796499ac43d2d2d31111d878a6a3bf9163802e8e48f850e0485ee192cef | C/C++ | 4,242 | 127 | // ***************************************************************************
// BamMultiReader.h (c) 2010 Erik Garrison, Derek Barnett
// Marth Lab, Department of Biology, Boston College
// ---------------------------------------------------------------------------
// Last modified: 14 January 2013 (DB)
// ----------... |
0ba1d165993252445b7b571a6792b31546cc1af43d41a1564dadb158f151c37e | C/C++ | 4,255 | 110 | /****************************************************************************
**
** Copyright (c) 2008-2015 C.B. Barber. All rights reserved.
** $Id: //main/2015/qhull/src/libqhullcpp/QhullQh.h#2 $$Change: 2079 $
** $DateTime: 2016/02/07 17:43:34 $$Author: bbarber $
**
**************************************************... |
a9f19153a604cce3becf86e2ee38ada552c42360c010c20f015c0678843c2156 | C/C++ | 4,295 | 112 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
ad77b848ad403f621986925b69e27b1492660de1bf7ce07aac78a949464df5b0 | C/C++ | 4,304 | 175 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
667e2aa65ec59cfc834288f9b79d43c0d02082f3bf49cdc81fba3ad1f2fc4f73 | C/C++ | 4,308 | 166 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
67168d84455b8f0a60b61fd7d9eeb7f45c9f2edebe4304dea34392c9d64913bf | C/C++ | 4,317 | 113 | /*
* Copyright (C) 2010-2011 Regents of the University of Michigan
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any la... |
f5303fb56b135cc38a1e9d80a3e93d6650130bdbe5cbf384174a13b76296c260 | C/C++ | 4,330 | 109 | /*
* Copyright (C) 2011 Regents of the University of Michigan
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later v... |
2dab496c1e8648462fda5b42d2dd6ba729bfe04ea000397475b76cbc96225e67 | C/C++ | 4,332 | 106 | /****************************************************************************
**
** Copyright (c) 2008-2015 C.B. Barber. All rights reserved.
** $Id: //main/2015/qhull/src/libqhullcpp/QhullFacetList.h#2 $$Change: 2066 $
** $DateTime: 2016/01/18 19:29:17 $$Author: bbarber $
**
*******************************************... |
abdc9822854744aa9a05bc5b1cbc1cc11e02ce93f8da885948cebff2a36d74c4 | C/C++ | 4,348 | 100 | /******************************************************************************/
/* The C Clustering Library.
* Copyright (C) 2002 Michiel Jan Laurens de Hoon.
*
* This library was written at the Laboratory of DNA Information Analysis,
* Human Genome Center, Institute of Medical Science, University of Tokyo,
* 4-6... |
dd1642c5baea065e9a5e868deec7c833a945fe0182635b1fd6ae94f4514cb148 | C/C++ | 4,349 | 136 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
4aca2e690667c52e3c3f24c6b7d5326f7dc7634bcde4086de05dac545386ec6c | C/C++ | 4,357 | 99 | /* sam_utils.c -- to hold utility functions and types
Copyright (C) 2023, 2026 Genome Research Ltd.
Author: Vasudeva Sarma <vasudeva.sarma@sanger.ac.uk>
Permission is hereby granted, free of charge, to any person obtaining a copy
of this software and associated documentation files (the "Software"), to deal
... |
5041a6f298aec9300dbeec7ef67a82b6d20ffd54bba93eda5c0f7440c252ed7a | C/C++ | 4,394 | 137 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
7fe2f7baf76097f286249343dc50d136af78878626435676c1bf4940a0bb0e58 | C/C++ | 4,412 | 161 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
c7f3c6805711c9dcb279ddc291a8aafd5ea25df608a6392c85c65703634a944e | C/C++ | 4,412 | 155 | // ***************************************************************************
// SamHeaderVersion.h (c) 2010 Derek Barnett
// Marth Lab, Department of Biology, Boston College
// ---------------------------------------------------------------------------
// Last modified: 10 October 2011 (DB)
// -----------------------... |
1aac93d4971ed6a9633201733edf4507ed9cff7e032c9462473389a060e43f75 | C/C++ | 4,415 | 131 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
fc648b780ff28540b4ce659446813ea91c9148b60c71325428b084d58423e7e2 | C/C++ | 4,428 | 199 | /**
* Copyright (c) Facebook, Inc. and its affiliates.
*
* This source code is licensed under the MIT license found in the
* LICENSE file in the root directory of this source tree.
*/
#pragma once
#include <iostream>
#include <thread>
#include <fstream>
#include <vector>
#include <string>
#include <algorithm>
#in... |
e7a9648f6c070cdc510d1df96769d07c179a7fec04c5de95a371793de80e2088 | C/C++ | 4,447 | 104 | /****************************************************************************
**
** Copyright (c) 2008-2015 C.B. Barber. All rights reserved.
** $Id: //main/2015/qhull/src/libqhullcpp/QhullVertex.h#4 $$Change: 2079 $
** $DateTime: 2016/02/07 17:43:34 $$Author: bbarber $
**
**********************************************... |
c6394d487d5f6c520eb44df8165527f74c808881cf29e12a98daf4594c7bec8d | C/C++ | 4,457 | 115 | /*
* Copyright (C) 2010 Regents of the University of Michigan
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later v... |
8a468a8c2896759be46bff8e06026e15dbe91cc7d49996560f4e13aeb8f1186b | C/C++ | 4,479 | 129 | /*
Copyright 2010-2011, D. E. Shaw Research.
All rights reserved.
Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions are
met:
* Redistributions of source code must retain the above copyright
notice, this list of conditions, and the f... |
a8629dcc87e933b27000e07151df45ba30465eccb1b0ab101f8a0cd3244236c9 | C/C++ | 4,505 | 155 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
81cdff35d3a9d02268c99b2232d9c30c21c1da95b78911826d217b2453cf0df6 | C/C++ | 4,514 | 111 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
b8ccab700362a8281a0dd9f5f43740e0d614a38af4d1e9a054a5c9604fba55a0 | C/C++ | 4,516 | 133 | /*
* Copyright (C) 2010 Regents of the University of Michigan
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later v... |
4be98d401812d9a56f0ef621ebaa46576082c3cb429cb3866bba55807e4685a1 | C/C++ | 4,551 | 117 | /* sam_opts.h -- utilities to aid parsing common command line options.
Copyright (C) 2015, 2019, 2025 Genome Research Ltd.
Author: James Bonfield <jkb@sanger.ac.uk>
Permission is hereby granted, free of charge, to any person obtaining a copy
of this software and associated documentation files (the "Software... |
95257d97a748e91ecbc6cae68fc32629862e564fcd7cbfed4249d65e45658e77 | C/C++ | 4,559 | 122 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
43e6c16d4cc453cb057ce4e9ee3d9b1fabe2b76008b1abb33d3a5672f6eea6eb | C/C++ | 4,562 | 137 | /* faidx.h -- FASTA random access.
Copyright (C) 2008, 2009, 2013, 2014 Genome Research Ltd.
Author: Heng Li <lh3@sanger.ac.uk>
Permission is hereby granted, free of charge, to any person obtaining
a copy of this software and associated documentation files (the
"Software"), to deal in the Software wit... |
a876324fbc581698c95c1904ae358446673f11f7a49ea685cfab3a4013c908d5 | C/C++ | 4,567 | 124 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
9dfb2d286cbd471a49a16f8e03169c145dcf315145e7c1937457defa9dde6786 | C/C++ | 4,570 | 153 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
2d6f56236b51469daf47a68f6327055ce7a6bf1be12e7bf7d03d130eb0a555d8 | C/C++ | 4,582 | 117 | /*
* Copyright (C) 2010 Regents of the University of Michigan
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later v... |
2fc1fe37276ce99bcfc383e4c85f113a435a6870900ac1643f772c90a4bd3d3c | C/C++ | 4,585 | 141 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
b72c1694902f886aabfea9dfab660b97b1cd988a465397d7e43db5e6fb46d39d | C/C++ | 4,587 | 186 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
5310a91d1f462f22c8e80e9d9d902209d86a857e49fda300517a50212033bffe | C/C++ | 4,595 | 152 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
e67f8149c58ca01db4f15ad96af9bee2a8cbd7a21e005796f1eed5dfd7a6667b | C/C++ | 4,616 | 137 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
6f5392752774edf192db774f273e68677bff8515ad7103955fb52d0ec2787c28 | C/C++ | 4,624 | 197 | //
// tldefs.h
// treelib
//
// Created by mbrazeau on 01/06/2017.
// Copyright © 2017 brazeaulab. All rights reserved.
//
#ifndef tldefs_h
#define tldefs_h
#ifdef DEBUG
#include <stdio.h>
#define dbg_printf(...) printf(__VA_ARGS__)
#else
#define dbg_printf(...)
#endif
#include <assert.h>
#include <stdbool.h>
#i... |
1fe54c0a1f0b1bb290e88ba03fd91f11737651d043dbaeb9cde9c7071f526278 | C/C++ | 4,631 | 117 | #pragma once
#include <vulkan/vulkan.h>
#include <array>
#include <glm.hpp>
#include <variant>
#include <vector>
#include "Debug/Debug.h"
#include "Design/DesignElement.h"
#include "Design/DesignSource.h"
/**
* @struct Vertex
* @brief A structure representing a Vertex in 3D space with additional color information... |
0d82226bc292c497510c42d33509d5422584f84545b194d9a6c85c208bcf06f9 | C/C++ | 4,669 | 85 | /*
* Copyright <2012> <Vincent Le Guilloux,Peter Schmidtke, Pierre Tuffery>
* Copyright <2013-2018> <Peter Schmidtke, Vincent Le Guilloux>
Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without... |
3b07a727135a8d2ace5b6b3c219bcf4c59f5bdeab0fe59ce6f30c56e182cd5f5 | C/C++ | 4,724 | 199 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
f386431e23bbd4e208746a3d0ee3ca3a672634d45354b6df495e97fd064fef52 | C/C++ | 4,735 | 108 | /*
* Copyright <2012> <Vincent Le Guilloux,Peter Schmidtke, Pierre Tuffery>
* Copyright <2013-2018> <Peter Schmidtke, Vincent Le Guilloux>
Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without... |
0db489925ad5400657747ec117500224620087356d883af4fa92ae96fed1d7e6 | C/C++ | 4,743 | 101 | /*
* Copyright <2012> <Vincent Le Guilloux,Peter Schmidtke, Pierre Tuffery>
* Copyright <2013-2018> <Peter Schmidtke, Vincent Le Guilloux>
Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without... |
502e23a61fe6b87cc876c1747ebec06253a4615e300312418f6d00d0fef401af | C/C++ | 4,745 | 130 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
4072f05a37a81a00d024e3eb784fad2bc3dbe166b4b6c2317f11c0d2f0e5ac02 | C/C++ | 4,751 | 172 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
394931f8ce987d57dc798812b3bdc17154550b8ecca0bd22adbfbffe648f229b | C/C++ | 4,783 | 166 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
ae130d78b74a335c6da97b30b0e655f86f4c7b5e53c97ebdb30e0184e8898520 | C/C++ | 4,790 | 149 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
5a0accf7b170292e1f8759f16fbb9b060860c4c213b579d183cb60306716b69c | C/C++ | 4,797 | 148 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
e86fb87a55d2f2fee721d137854d657c85ede187511b8689d87beb2f2575f115 | C/C++ | 4,805 | 112 | /****************************************************************************
**
** Copyright (c) 2008-2015 C.B. Barber. All rights reserved.
** $Id: //main/2015/qhull/src/libqhullcpp/QhullRidge.h#4 $$Change: 2079 $
** $DateTime: 2016/02/07 17:43:34 $$Author: bbarber $
**
***********************************************... |
dabe5361def5aa3ff630b8e58b9b40fc815ee38e74fd62ed17652d1fc8af2b57 | C/C++ | 4,806 | 146 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
45ca62aca04f38b36b9079ea3167556896d1baf0c3ef84173f6272ad6d80e391 | C/C++ | 4,829 | 102 | /*
* Copyright (C) 2010 Regents of the University of Michigan
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later v... |
1a7cfaf61c4e78b59204962707b3631e4432048b6e19e061087ec0e3ad270d40 | C/C++ | 4,850 | 141 | /* Copyright (c) 2008-2026 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "a... |
4626509de2c2ce7def7d313795ec566e3076779623b9b544356dee0f41f01b39 | C/C++ | 4,861 | 150 | /*<html><pre> -<a href="qh-qhull.htm"
>-------------------------------</a><a name="TOP">-</a>
qhull_a.h
all header files for compiling qhull with non-reentrant code
included before C++ headers for user_r.h:QHULL_CRTDBG
see qh-qhull.htm
see libqhull.h for user-level defin... |
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