sha256 stringlengths 64 64 | language stringclasses 28
values | size int32 1 491k | lines int32 1 23.2k | content stringlengths 1 200k |
|---|---|---|---|---|
3b8eb28334ba76b99105d11549b3faa49a4e7a40558c1532ee5a0c16596d5b1d | C++ | 8,559 | 195 | ///-------------------------------------------------------------------------------------------------
///
/// \file CBoxAlgorithmClassifierAccuracyMeasure.cpp
/// \author Laurent Bonnet (INRIA/IRISA)
/// \version 1.0.
/// \copyright Copyright (C) 2022 Inria
///
/// This program is free software: you can redistribute it... |
c366a2e144b7ab8be140c2bd12d0a1746fc240892a46d47086725284eeedc5f4 | C++ | 8,573 | 256 | ///-------------------------------------------------------------------------------------------------
///
/// \file CRendererContext.cpp
/// \copyright Copyright (C) 2022 Inria
///
/// This program is free software: you can redistribute it and/or modify
/// it under the terms of the GNU Affero General Public License as... |
657d312821b1899ea296b7e17bd9f47043cae81fd752fe1f31206ce856d8c66e | C++ | 8,574 | 202 | ///-------------------------------------------------------------------------------------------------
///
/// \file CBoxAlgorithmZeroCrossingDetector.cpp
/// \brief Classes implementation for the Box Zero-Crossing Detector.
/// \author Quentin Barthelemy (Mensia Technologies).
/// \version 1.0.
/// \copyright Copyright... |
332e53212c2eface6dbb6afb863a7f5896e39d9a59fbbaea494d174a70f8935e | C++ | 8,586 | 170 | ///-------------------------------------------------------------------------------------------------
///
/// \file CBias.cpp
/// \brief Class implementation used to add Rebias to Other Classifier.
/// \author Thibaut Monseigne (Inria).
/// \version 1.0.
/// \date 27/08/2019.
/// \copyright Copyright (C) 2022 Inria
///... |
0ea11146e1dacbc5271511ab0cde65dba6479a44c2dec4399db88857b4ee217d | C++ | 8,594 | 205 | #include <content/providers/ssh_provider.hpp>
#include <imgui.h>
#include <fonts/vscode_icons.hpp>
#include <hex/helpers/logger.hpp>
#include <hex/ui/imgui_imhex_extensions.h>
#include <hex/helpers/utils.hpp>
#include <nlohmann/json.hpp>
#include <toasts/toast_notification.hpp>
namespace hex::plugin::remote {
p... |
58c20de4a1433d1285047101b1887d1e537aba9da2b735a33a5277e1f4fe61fe | C++ | 8,600 | 237 | //-----------------------------------------------
// Copyright 2011 Wellcome Trust Sanger Institute
// Written by Jared Simpson (js18@sanger.ac.uk)
// Released under the GPL license
//-----------------------------------------------
//
// BWTCABauerCoxRosone - In-memory version of Illumina's
// BWT construction algorith... |
6fc94dde411586b144b20601be558a4ebbc19dba70a9b51078b86e5bf95dde2d | C++ | 8,618 | 198 | #include "ovtkCAlgorithmClassifier.h"
#include "ovtkCFeatureVector.hpp"
#include "ovtkCFeatureVectorSet.hpp"
#include "ovtkCVector.hpp"
#include <xml/IXMLHandler.h>
#include <iostream>
namespace OpenViBE {
namespace Toolkit {
bool CAlgorithmClassifier::initialize()
{
m_AlgorithmProxy = nullptr;
m_ExtraPa... |
8f13799ab3b03c2561b27f5ac7def6ca2a1e9e189b59e85f87cb234b47e69491 | C++ | 8,622 | 222 | #include "assembly2vcf.h"
#include <getopt.h>
#include <string>
#include <sstream>
#include <iostream>
#include "vcf.h"
#include "AssemblyBamWalker.h"
#include "SnowmanBamWalker.h"
#include "SnowmanUtils.h"
#define MIN_ISIZE_FOR_DISC 700
faidx_t * findex;
enum {
OPT_NO_READS
};
struct bidx_delete {
void ope... |
e8c39e8b363132f4447b9fc7d42af5f7f6fe26671450a7bf8fe546ed5e093133 | C++ | 8,637 | 239 | ///-------------------------------------------------------------------------------------------------
/// \copyright Copyright (C) 2014, Mensia Technologies SA. All rights reserved.
/// Rights transferred to Inria, contract signed 21.11.2014
///----------------------------------------------------------------------------... |
7dc39a2dabc8dfb716d6316b27d23910a7d76183c7423674c2ffc630a6cacf40 | C++ | 8,688 | 216 | //-----------------------------------------------
// Copyright 2010 Wellcome Trust Sanger Institute
// Written by Jared Simpson (js18@sanger.ac.uk)
// Released under the GPL
//-----------------------------------------------
//
// RemovalAlgorithm - Determine the set of edges that
// must be added to a given vertex to k... |
7169ad6c72298d5b169f671bbfd78519109d362cc099688984731595a36e62f4 | C++ | 8,722 | 254 | /**
* \file
* \author Trevor Fountain
* \author Johannes Buchner
* \author Erik Garrison
* \date 2010-2014
* \copyright BSD 3-Clause
*
* progressbar -- a C class (by convention) for displaying progress
* on the command line (to stdout).
*/
#include "coreneuron/utils/progressbar/progressbar.hpp"
#include <cas... |
5763c5ea831fb821704995457e61c571b3b21e521d87e1d2ebba732020f36e1f | C++ | 8,755 | 189 | ///-------------------------------------------------------------------------------------------------
///
/// \file CBoxAlgorithmASRProcessor.hpp
/// \brief Classes implementation for the box ASR Processor.
/// \author Thibaut Monseigne (Inria).
/// \version 1.0.
/// \date 08/12/2020.
/// \copyright Copyright (C) 2022 ... |
5e1ffeae66269645aed17deb92e222ac4588c5e2930e245de6e8ef33312bed61 | C++ | 8,758 | 286 | /**
* @file ConnectedClient.cpp
* @brief Implementation of the ConnectedClient class for managing individual client connections in a server.
* @author Florent LERAY
* @date 2025-10-04
*
* This file contains the implementation of the ConnectedClient class, which is responsible for handling
* communication with a ... |
0760fbfab5a7924638894bdb491f5a1b042289ba28efe3263e93bb3c59cf2065 | C++ | 8,770 | 349 |
#include <iostream>
#include<sstream>
#include <cstdlib>
using namespace std;
#include "CodonStateSpace.h"
CodonStateSpace::CodonStateSpace(GeneticCodeType type) {
nucstatespace = new DNAStateSpace;
protstatespace = new ProteinStateSpace;
code = type;
if (code == Universal) {
Nstate = Ncodon - UniNStopCodons... |
bb8123f688191d768403783f3d2f5136192b8cfc83e3867b1268281775ccad89 | C++ | 8,787 | 290 | #include <iostream>
#include <string>
#include "gtest/gtest.h"
#include "ovtAssert.h"
#include "ovtTestFixtureCommon.h"
#include <ovp_global_defines.h>
#include <array>
// DO NOT USE a global Test::ScopedTest<Test::SKernelFixture> variable here
// because it causes a bug due to plugins global descriptors beeing des... |
b54d96cca1a001060ef1f50a97fb76e8e4e183655f7fa389a55a14e9591902cc | C++ | 8,793 | 220 | #include "ovasCPluginExternalStimulations.h"
#include "ovasParameterHelper.h"
#include <boost/interprocess/ipc/message_queue.hpp>
#include <vector>
#include <ctime>
#include <system/ovCTime.h>
namespace OpenViBE {
namespace AcquisitionServer {
namespace Plugins {
CPluginExternalStimulations::CPluginExternalStimula... |
c679872ce0685b47ce72c714e6dadd1d12d68a2487d53be3f65c26789abc670d | C++ | 8,813 | 257 | //
// OpenViBE Tracker
//
// @author J.T. Lindgren
//
#include <openvibe/ov_all.h>
#include <toolkit/ovtk_all.h>
#include <iostream>
#include "CTracker.h"
#include "GUI.h"
#include "Testclass.h"
#if defined TARGET_OS_Windows
#include "Windows.h"
#include "shellapi.h"
#endif
typedef enum
{
CommandLineFlag_Non... |
d54f2452c6d15148f154cb6ada27792ca7844aac6cb10288ee432a8b3d1891bb | C++ | 8,854 | 206 | ///-------------------------------------------------------------------------------------------------
///
/// \file ovpCBoxAlgorithmARCoefficients.cpp
/// \brief Implementation of the box ARCoefficients
/// \author Alison Cellard / Arthur DESBOIS (Inria).
/// \version 0.0.1.
/// \date June 28 15:13:00 2022.
///
/// \cop... |
f5afa8f3e3aed7da548539f5b9dd906cb7121a7ddc583f436e953d93db8a0555 | C++ | 8,887 | 387 |
/********************
PhyloBayes MPI. Copyright 2010-2013 Nicolas Lartillot, Nicolas Rodrigue, Daniel Stubbs, Jacques Richer.
PhyloBayes is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License
as published by the Free Software Foundation, either version 3 of the L... |
11e36703257402db9a3f895fb58ba5978866a18b73b0e1c97488125e44ef5a6d | C++ | 8,906 | 315 | /*****************************************************************************
VectorOps.cpp
(c) 2009 - Aaron Quinlan
Hall Laboratory
Department of Biochemistry and Molecular Genetics
University of Virginia
aaronquinlan@gmail.com
Purpose: Container to perform various useful operations
(e.g.,... |
cad3a3a64e92fbff6e6ebc6e570d3efb7851d26ac346854c7fa9c0936949b85b | C++ | 8,912 | 148 | #include <string>
#include <vector>
#include <ovp_global_defines.h>
#include "ovtAssert.h"
#include "ovtTestFixtureCommon.h"
#include "urSimpleTestScenarioDefinition.h"
#define to_cppstring(str) std::string(str.toASCIIString())
int urImportScenarioFromFileTest(int /*argc*/, char* argv[])
{
Test::ScopedTest<Test::... |
c87d0fff3538b30cbd09af6b600aa3c86f7378cf86b25e5af09a9b67b9b5348e | C++ | 8,914 | 237 | #include "CSkeletonGenerator.hpp"
#include <string>
#include <ctime>
#include <sstream>
#include <fstream>
#include <iostream>
#include <iterator>
#include <boost/regex.hpp>
namespace OpenViBE {
namespace SkeletonGenerator {
CSkeletonGenerator::CSkeletonGenerator(Kernel::IKernelContext& ctx, GtkBuilder* builder)
... |
c140a801d8c52c2de8970df05318fae78e8f1e397757ae20c58668e04d8fd2d9 | C++ | 8,932 | 147 | ///-------------------------------------------------------------------------------------------------
///
/// \file main.cpp
/// \brief Main file for Signal Processing plugin, registering the boxes to OpenViBE
/// \copyright Copyright (C) 2022 Inria
///
/// This program is free software: you can redistribute it and/or ... |
3bff86f1e7875dec1dee594be5292ac387ac5cdbbee3b1e4f82d540a7625fb43 | C++ | 8,936 | 188 | ///-------------------------------------------------------------------------------------------------
///
/// \file CBoxAlgorithmCovarianceMeanCalculator.cpp
/// \brief Classes implementation for the box computing the mean of the covariance matrix.
/// \author Thibaut Monseigne (Inria).
/// \version 1.0.
/// \date 12/1... |
cc11755de1c03136f1079b07ebad4b61018c426139d878891ab86e0da7b79ad9 | C++ | 8,952 | 243 | #include <hex/mcp/server.hpp>
#include <string>
#include <fmt/format.h>
#include <hex/helpers/logger.hpp>
#include <nlohmann/json.hpp>
#include <utility>
#include <hex/api/task_manager.hpp>
#include <wolv/net/socket_client.hpp>
#include <hex/api/imhex_api/system.hpp>
namespace hex::mcp {
std::optional<std::str... |
1d20e6d0d303f85c01d7c8763a01a917c7843121ef80ed51060e01335372bcde | C++ | 8,977 | 206 | ///-------------------------------------------------------------------------------------------------
///
/// \file ovpCBoxAlgorithmEDFFileReader.cpp
/// \brief Classes of the box EDF File Reader
/// \author Axel Bouneau (Inria).
/// \version 1.0.
/// \date Wad Feb 26 10:00:00 2025.
/// \Copyright (C) 2024 Inria
///
/... |
ff0a2a0bbc17d702b7d3e47ceae08d5ef4b4c7bd52be190be573b0fc4edaaadb | C++ | 8,983 | 203 | #if defined(TARGET_HAS_ThirdPartyFFTW3) // fftw3 required by wavelet2s
#include "ovpCBoxAlgorithmDiscreteWaveletTransform.h"
#include <cstdlib>
#include <vector>
#include <map>
#include <math.h>
#include <fstream>
#include <string>
#include "../../../contrib/packages/wavelet2d/wavelet2s.h"
namespace OpenViBE {
name... |
99466a48a6ff25e6f72bde58c6a36a5daae1ffcc20eb0a07735721e9ab8e8864 | C++ | 8,994 | 251 | #include <hex/ui/view.hpp>
#include <hex/helpers/auto_reset.hpp>
#include <hex/api/imhex_api/provider.hpp>
#include <hex/api/task_manager.hpp>
#include <hex/api/tutorial_manager.hpp>
#include <imgui_internal.h>
#include <imgui.h>
#include <string>
#include <GLFW/glfw3.h>
namespace hex {
static AutoReset<View*... |
de3047b3e13db4a9d8ee4bb55f7425f61b1c276ff96f8e6e5ee367362460de4c | C++ | 8,996 | 191 | ///-------------------------------------------------------------------------------------------------
///
/// \file CBoxIFFT.cpp
/// \brief Class of the box that inverse the Fast Fourier Transform.
/// \author Guillermo Andrade B. (Inria).
/// \version 1.0.
/// \date 20/01/2012.
/// \copyright Copyright (C) 2022 Inria
... |
b3be3161486687059548f4f02bc71a5d4442368f5b5671ec8551fd0e5d562541 | C++ | 9,003 | 234 | /*
* OpenBCI driver for OpenViBE
*
* \author Jeremy Frey
* \author Yann Renard
*
*/
#include "ovasCConfigurationOpenBCI.h"
#include <algorithm>
#include <string>
#if defined TARGET_OS_Windows
#include <windows.h>
#include <winbase.h>
#include <cstdio>
#include <commctrl.h>
//#define TERM_SPEED 57600
#define TERM... |
6ccb4062b2c086f8f01ac64132b035bd155594c4b97761d117857f1f133cc1df | C++ | 9,023 | 217 | /*******************************************************************************
"A Collection of Useful C++ Classes for Digital Signal Processing"
By Vinnie Falco
Official project location:
https://github.com/vinniefalco/DSPFilters
See Documentation.cpp for contact information, notes, and bibliography.
----------... |
cd4f93587911065563a1910e806a91e96dd2395e3b5ff85c3c88cdd4be290350 | C++ | 9,055 | 340 | //-----------------------------------------------
// Copyright 2009 Wellcome Trust Sanger Institute
// Written by Jared Simpson (js18@sanger.ac.uk)
// Released under the GPL
//-----------------------------------------------
//
// Match - A pair of coordinates representing the overlapping
// regions of two sequences
//
... |
280fe6cd044d6b0d399854ba1cce53887d777a8a85c815034d96a2f048094c03 | C++ | 9,059 | 274 | #include <csignal>
#include <cstring>
#include <string>
#include <thread>
#include <chrono>
#include <iostream>
#include <thread>
#include <cmath>
#include <map>
#include <ebml/IWriterHelper.h>
#include <ebml/IWriter.h>
#include <ebml/TWriterCallbackProxy.h>
#include <communication/ovCMessagingClient.h>
#include <to... |
c209f8f85c30814e05aae37f486b5bef57a8ec1fe519c977e9e5573e85f8a73b | C++ | 9,061 | 180 | #include <algorithm>
#include <hex/api/content_registry/data_processor.hpp>
#include <hex/data_processor/node.hpp>
#include <ranges>
namespace hex::plugin::builtin {
class NodeBitwiseNOT : public dp::Node {
public:
NodeBitwiseNOT() : Node("hex.builtin.nodes.bitwise.not.header"_unlocalized, { dp::Attr... |
fdac1a62a83695d10968f4177eda34843ff15c2157d805c0ac5109ec8e4ba032 | C++ | 9,068 | 161 | #include <hex/api/content_registry/data_processor.hpp>
#include <hex/data_processor/node.hpp>
namespace hex::plugin::builtin {
class NodeIf : public dp::Node {
public:
NodeIf() : Node("hex.builtin.nodes.control_flow.if.header"_unlocalized,
{ dp::Attribute(dp::Attribute::IOType::... |
3a8857359e1ac140b0615a899336e45213736ba3aa9f4c253b142e8df783b9bd | C++ | 9,069 | 243 | /*
# =============================================================================
# Copyright (c) 2016 - 2021 Blue Brain Project/EPFL
#
# See top-level LICENSE file for details.
# =============================================================================.
*/
// Want to have the classical NEURON PatternStim functio... |
42156b71473856ea896761d7c2711c6235a88f85521f8aba7c945bdf8814da09 | C++ | 9,088 | 283 | /*******************************************************************************
"A Collection of Useful C++ Classes for Digital Signal Processing"
By Vinnie Falco
Official project location:
https://github.com/vinniefalco/DSPFilters
See Documentation.cpp for contact information, notes, and bibliography.
----------... |
f82ed926663b9addc40f522be9224dd3cbfcc66b74c9448da918ae189e2ea3f8 | C++ | 9,090 | 206 | ///-------------------------------------------------------------------------------------------------
///
/// \file CBoxAlgorithmKappaCoefficient.cpp
/// \author Serriere Guillaume (Inria)
/// \version 1.0.
/// \date 05/05/2015.
/// \copyright Copyright (C) 2022 Inria
///
/// This program is free software: you can redi... |
214a29dbde1cfc4fa7ea7145c3a56bf8fc925cdae012e1f22e2de8231c25d18d | C++ | 9,098 | 299 | /**
* SPDX-FileCopyrightText: Inria <florent.leray@inria.fr>
* SPDX-License-Identifier: AGPL-3.0-only
*/
#include "Thread.h"
#include <iostream>
#include <cstring>
#if defined (_WIN64) || defined(_WIN32)
#include <Windows.h>
#endif
constexpr static const int inputMinPriority = 1;
constexpr static const int input... |
1362908a3e8b631e6ae607c53ee1c75f83ec88857d2f955f8caad0085bea5c23 | C++ | 9,103 | 210 | #include <hex.hpp>
#include <hex/api/content_registry/diffing.hpp>
#include <hex/providers/buffered_reader.hpp>
#include <wolv/utils/guards.hpp>
#include <wolv/literals.hpp>
#include <edlib.h>
#include <imgui.h>
#include <hex/api/task_manager.hpp>
#include <span>
namespace hex::plugin::diffing {
using namespa... |
64075d8c5d0b4276c08dfdf3f1e0b46dd5878de14c5fe98ad4cebfb3a96ff3af | C++ | 9,107 | 211 | ///-------------------------------------------------------------------------------------------------
///
/// \file CBoxAlgorithmStimulationVoter.cpp
/// \brief Classes implementation for the Box Stimulation Voter.
/// \author Jussi T. Lindgren (Inria).
/// \version 1.0.
/// \copyright Copyright (C) 2022 Inria
///
/// ... |
ac45e0bcf23e4ed1cac6a51da5942bef172bb0866d4936559ea7899effb48224 | C++ | 9,131 | 292 |
/********************
PhyloBayes MPI. Copyright 2010-2013 Nicolas Lartillot, Nicolas Rodrigue, Daniel Stubbs, Jacques Richer.
PhyloBayes is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License
as published by the Free Software Foundation, either version 3 of the L... |
f5fe47d15b88ef6e56b31723add1a9c903d0952e591ac029b154c8d9ab7d3e8e | C++ | 9,133 | 255 | ///-------------------------------------------------------------------------------------------------
///
/// \file IVRPNServerManager.cpp
/// \brief Interface for VRPN Management.
/// \copyright Copyright (C) 2022 Inria
///
/// This program is free software: you can redistribute it and/or modify
/// it under the terms... |
66efb62159c17d5a3fa685c6190917edb7dc6dd527206b3c3f07d24642ce4348 | C++ | 9,134 | 194 | ///-------------------------------------------------------------------------------------------------
///
/// \file CMatrixClassifierMDM.cpp
/// \brief Class implementation of Minimum Distance to Mean (MDM) Classifier
/// \author Thibaut Monseigne (Inria).
/// \version 1.0.
/// \date 10/12/2018.
/// \copyright Copyrigh... |
fd5f9bf2f0424c890cf87bb73c7a248a47723853a5abd3305a112610123ebb77 | C++ | 9,144 | 325 | /*
Szymon Rusinkiewicz
Princeton University
TriMesh_curvature.cc
Computation of per-vertex principal curvatures and directions.
Uses algorithm from
Rusinkiewicz, Szymon.
"Estimating Curvatures and Their Derivatives on Triangle Meshes,"
Proc. 3DPVT, 2004.
*/
#include <stdio.h>
#include "TriMe... |
7e1666ee3b498e40e8f13b2f7f4938730c58e278975606778f443802e220b71c | C++ | 9,166 | 298 | // SPDX-FileCopyrightText: Inria <tristan.cabel@inria.fr>
// SPDX-License-Identifier: AGPL-3.0-only
#include "CGraphWindow.h"
#include <QAreaSeries>
#include <QLineSeries>
#include <QValueAxis>
#include <QXYSeries>
#include <QQmlContext>
#include <QQuickItem>
#include <QQmlEngine>
#include <QQmlComponent>
#include <QQ... |
770acc2958833cb09bfd30246e651607025ac033ef5aa55a46bca53d61145157 | C++ | 9,180 | 215 | ///-------------------------------------------------------------------------------------------------
///
/// \file CROCCurveDraw.cpp
/// \copyright Copyright (C) 2022 Inria
///
/// This program is free software: you can redistribute it and/or modify
/// it under the terms of the GNU Affero General Public License as pu... |
2fbb9a16724cfc110bbb1530c294dec39ed8e058d77d2075bbb2335157e71a7c | C++ | 9,216 | 183 | ///-------------------------------------------------------------------------------------------------
///
/// \file IMatrixClassifier.cpp
/// \brief Abstract class implementation of Matrix Classifier
/// \author Thibaut Monseigne (Inria).
/// \version 1.0.
/// \date 10/12/2018.
/// \copyright Copyright (C) 2022 Inria
/... |
b9fd1ba427310e0a87db11abe59cfe42ae9c2ff923684c703896f24f8d0a5b5e | C++ | 9,219 | 388 | //-----------------------------------------------
// Copyright 2010 Wellcome Trust Sanger Institute
// Written by Jared Simpson (js18@sanger.ac.uk)
// Released under the GPL
//-----------------------------------------------
//
// ASQG - Definitions and functions
// for handling ASGQ files
//
#include "ASQG.h"
#include ... |
163dd5afb63759bc402e4076ceac9e345ee8f1242b1c06383cf4ff6314e91225 | C++ | 9,229 | 388 | //-----------------------------------------------
// Copyright 2010 Wellcome Trust Sanger Institute
// Written by Jared Simpson (js18@sanger.ac.uk)
// Released under the GPL
//-----------------------------------------------
//
// ASQG - Definitions and functions
// for handling ASGQ files
//
#include "SvabaASQG.h"
#inc... |
5b4e906d945807220c34782831b7e0da034c2393dcc6a2d401d2bf683e5499bc | C++ | 9,263 | 257 | ///----------------------------------------------
// Copyright 2011 Wellcome Trust Sanger Institute
// Written by Jared Simpson (js18@sanger.ac.uk)
// Released under the GPL
//-----------------------------------------------
//
// GapFillProcess - Fill in gaps in a scaffold
//
#include <algorithm>
#include "GapFillProce... |
3b677fc34b53bf5abedfe163f38e81399e7baf807e4d3efb2eb27148ad9ceb27 | C++ | 9,268 | 396 |
/********************
PhyloBayes MPI. Copyright 2010-2013 Nicolas Lartillot, Nicolas Rodrigue, Daniel Stubbs, Jacques Richer.
PhyloBayes is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License
as published by the Free Software Foundation, either version 3 of the L... |
bb9df88c877990e6f2bc5434fb72f3ba7c6609286eb0c57f8f1ffb4c80deda9d | C++ | 9,272 | 235 | #include <ui/pattern_value_editor.hpp>
#include <imgui.h>
#include <hex/helpers/utils.hpp>
#include <hex/ui/imgui_imhex_extensions.h>
#include <wolv/math_eval/math_evaluator.hpp>
#include <pl/patterns/pattern_array_dynamic.hpp>
#include <pl/patterns/pattern_array_static.hpp>
#include <pl/patterns/pattern_bitfield.hpp... |
33c575f1743b247b710b6d2e562ef52804f61da2ab383658a14e1a87b854700b | C++ | 9,281 | 367 |
/********************
PhyloBayes MPI. Copyright 2010-2013 Nicolas Lartillot, Nicolas Rodrigue, Daniel Stubbs, Jacques Richer.
PhyloBayes is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License
as published by the Free Software Foundation, either version 3 of the L... |
44516fde124ddfb6b8a17093b6ffb71041c4a31d95fd146a119877b3d47a71db | C++ | 9,281 | 277 | #include "IEntryEnumerator.h"
#include <string>
#include <cstring>
#include <stack>
#if defined TARGET_OS_Linux || defined TARGET_OS_MacOS
#include <glob.h>
#include <sys/stat.h>
#elif defined TARGET_OS_Windows
#ifndef UNICODE
#define UNICODE
#endif
#include <Windows.h>
#include <codecvt>
#include <locale>
#else
#e... |
0f1cec5a7001fa90be1a77ac9aa3c4b16a67bdc9fdd48f77c7caeef33832d3bd | C++ | 9,295 | 234 | #if defined TARGET_HAS_ThirdPartyITPP
#include "ovpCFastICA.h"
#include <iostream>
#include <itpp/itstat.h>
#include <itpp/itsignal.h>
namespace OpenViBE {
namespace Plugins {
namespace SignalProcessing {
void CFastICA::computeICA()
{
const size_t nChannel = m_decoder.getOutputMatrix()->getDimensionSize(0);
... |
ff06474385f6971e72afc703e871cf4aa02669642c7f87a40b2cd4b24f5fe491 | C++ | 9,325 | 311 | //
// OpenViBE Tracker
//
// @author J.T. Lindgren
//
// @todo add horizontal scaling support
// @todo add event handlers
// @todo add ruler, stimulations, channel names, a million of other things
#include <openvibe/ov_all.h>
#include <toolkit/ovtk_all.h>
#include <iostream>
#include <system/ovCTime.h>
#include <me... |
b21b26877db7068dcd5ce5c5546ddacb28ebf6cf8b69b6317d1aa9080a0e49c9 | C++ | 9,339 | 231 | /*
* The raw reader expects the data to be formatted as follows
*
* [START][BLOCK0][BLOCK1][BLOCK2]...
* skip parse parse parse ...
*
* where each block is [===========BLOCKX=================]
* is read as [===========dataFrameSize==========]
* breaks to [he... |
edee3f0c76dadf356229b1a74cf2da66a4a3c31c7386a4d283fa81fe25b6853d | C++ | 9,339 | 294 | #if !defined(OS_WEB)
#include "content/providers/command_provider.hpp"
#include <chrono>
#include <imgui.h>
#include <hex/ui/imgui_imhex_extensions.h>
#include <hex/helpers/fmt.hpp>
#include <hex/api/localization_manager.hpp>
#include <hex/helpers/logger.hpp>
#include <nlohmann/json.hpp>
#include <wolv/utils/charc... |
c26170e4651a4612483f0e430305b7b1b26df3e132d8a1a2733d128493e96fe5 | C++ | 9,344 | 163 | #include "ovpCBoxAlgorithmBrainampFileReader.h"
namespace OpenViBE {
namespace Plugins {
namespace FileIO {
uint64_t CBoxAlgorithmBrainampFileReader::getClockFrequency()
{
// Brainamp file reader parameters
Kernel::TParameterHandler<CString*> ip_filename(m_reader->getInputParameter(OVP_Algorithm_BrainampFileR... |
c7d4b61ea6b9609dc86796aca58891b91bd1ece95dc76cca69c8ff3351b26f2b | C++ | 9,427 | 249 | ///-------------------------------------------------------------------------------------------------
///
/// \file CBoxAlgorithmEBMLStreamSpy.cpp
/// \brief Classes implementation for the Box EBML stream spy.
/// \author Yann Renard (Inria).
/// \version 1.0.
/// \copyright Copyright (C) 2022 Inria
///
/// This progra... |
ea3fa20abeb36ae06b5c2a78a90547ed897a20c4657678327869fb403ae9a0aa | C++ | 9,431 | 206 | #include "ovpCTemporalFilterBoxAlgorithm.h"
#include <cstdlib>
#include <cerrno>
namespace OpenViBE {
namespace Plugins {
namespace SignalProcessing {
bool CTemporalFilterBoxAlgorithm::initialize()
{
m_decoder = new Toolkit::TSignalDecoder<CTemporalFilterBoxAlgorithm>(*this, 0);
m_encoder = new Toolkit::TSign... |
df59a039a3399cfd6d31f60c96c87e772691b1c6e6544db9672e5cbe22b283fc | C++ | 9,445 | 225 | #include <hex/api/http/github_api.hpp>
#include <hex/api/http/api_urls.hpp>
#include <hex/helpers/http_requests.hpp>
#include <nlohmann/json.hpp>
#include <condition_variable>
#include <map>
#include <mutex>
#include <optional>
namespace hex {
namespace {
using namespace std::literals::string_literals... |
ad6b1e6b51de7cdd61dbfc648afa4b4a503a0a7a8927a0e6971d8c9699de49ce | C++ | 9,463 | 248 | /*******************************************************************************
Copyright 2006-2012 Lukas Käll <lukas.kall@scilifelab.se>
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
http:... |
63e858bac7d83b3b2f7f41ef94db72d1c3d15a82d1fefa499dee3bf1c181c2e0 | C++ | 9,482 | 287 | /* -*- mode: C++; indent-tabs-mode: nil; -*-
*
* This file is a part of LEMON, a generic C++ optimization library.
*
* Copyright (C) 2003-2013
* Egervary Jeno Kombinatorikus Optimalizalasi Kutatocsoport
* (Egervary Research Group on Combinatorial Optimization, EGRES).
*
* Permission to use, modify and distribut... |
4846b6f950c32bbdd4e934511a7a41a00d313cf76b815696865951cd16001bf0 | C++ | 9,497 | 175 | //FastQTL: Fast and efficient QTL mapper for molecular phenotypes
//Copyright (C) 2015 Olivier DELANEAU, Alfonso BUIL, Emmanouil DERMITZAKIS & Olivier DELANEAU
//
//This program is free software: you can redistribute it and/or modify
//it under the terms of the GNU General Public License as published by
//the Free Soft... |
d0a49434fa2b879657953718a6e85d8d9176c77259e53fac8ab164ad0632b1c9 | C++ | 9,536 | 281 | // SPDX-FileCopyrightText: Inria <thomas.prampart@inria.fr>
// SPDX-License-Identifier: AGPL-3.0-only
#include "ScenarioClipboard.h"
#include "ScenarioSerializer.h"
#ifdef TARGET_HAS_ThirdPartyOpenViBEPluginsGlobalDefines
#include "ovp_global_defines.h"
#endif // TARGET_HAS_ThirdPartyOpenViBEPluginsGlobalDefines
#in... |
0ab43c1b25f4e14dbdb22241084faf5104d46fbc937145321c40a57eca4d604b | C++ | 9,549 | 256 | #include <iostream>
#include <fstream>
#include <sstream>
#include <cstdlib>
#include <boost/regex.hpp>
#include <boost/predef/other/endian.h>
#include "ovpCBCI2000ReaderHelper.h"
namespace BCI2000 {
void CBCI2000ReaderHelper::printInfo(std::ostream& os) const
{
if (m_good)
{
os << "version: ... |
c620baf1835d1a7fb32d4c1938888ff8c3d972a2ecbfe7c34d63f8c7f510372f | C++ | 9,560 | 384 |
/********************
PhyloBayes MPI. Copyright 2010-2013 Nicolas Lartillot, Nicolas Rodrigue, Daniel Stubbs, Jacques Richer.
PhyloBayes is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License
as published by the Free Software Foundation, either version 3 of the L... |
cf766cb3f3f195252ed8d3c43bee476a3b5abefff945e5f27617edd751fdb439 | C++ | 9,564 | 253 | #include "ovpCInputChannel.h"
#include <iostream>
#include <cstring>
namespace OpenViBE {
namespace Plugins {
namespace SignalProcessing {
namespace {
class _AutoCast_
{
public:
_AutoCast_(const Kernel::IBox& box, Kernel::IConfigurationManager& configManager, const size_t index) : m_configManager(configManager)
... |
eabef885032224e3a1b247604db52ea74783f5b73ecf0f6e8298a733211a1843 | C++ | 9,596 | 237 | #include "ovasCHeader.h"
#include <map>
#include <string>
#define NO_VALUE_I 0xffffffff
namespace OpenViBE {
namespace AcquisitionServer {
namespace {
class CHeaderImpl final : public IHeader
{
public:
CHeaderImpl() {}
~CHeaderImpl() override {}
void reset() override;
// Experiment information
b... |
a7a76234545fccdaccd4ae235c07a1a14c57686de6338d6a6baff8ccf6af9b02 | C++ | 9,600 | 257 | ///-------------------------------------------------------------------------------------------------
///
/// \file spectrumTools.cpp
/// \brief Tools for spectrum computation - to be merged with connectivity measures
/// \author Arthur Desbois
/// \version 1.0
///
/// \copyright Copyright(C) 2021-2022 Inria
///
/// Thi... |
007f60ee9866a93b6b32d523b6954de1b119be43be9b0d2dfa60a18e865e7a94 | C++ | 9,632 | 310 | ///-------------------------------------------------------------------------------------------------
///
/// \file IRenderer.cpp
/// \copyright Copyright (C) 2022 Inria
///
/// This program is free software: you can redistribute it and/or modify
/// it under the terms of the GNU Affero General Public License as publis... |
8f06768d4af5252fca0fb0513bd49f56560f7e1602733e8e54240b609cd4bb42 | C++ | 9,632 | 226 |
#include "CBoxAlgorithmMatrixDisplay.hpp"
#include <visualization-toolkit/ovviz_all.h>
#include <string>
#include <sstream>
#include <iomanip>
#include <cstdlib>
#include <cmath>
namespace OpenViBE {
namespace Plugins {
namespace SimpleVisualization {
bool CBoxAlgorithmMatrixDisplay::initialize()
{
//targets ... |
337b9e0cad0d67ffc0517e6184c6e1350f99d2383ca181fc6f8edb9f58f6b9d1 | C++ | 9,649 | 224 | ///-------------------------------------------------------------------------------------------------
///
/// \file CBoxAlgorithmROCCurve.cpp
/// \author Serriere Guillaume (Inria)
/// \version 1.0.
/// \date 28/05/2015.
/// \copyright Copyright (C) 2022 Inria
///
/// This program is free software: you can redistribute... |
7859822dd741050ec30fa7f5cfb9d0aa38edbd981424b7900dfe43d9dd2853dd | C++ | 9,725 | 388 |
/********************
PhyloBayes MPI. Copyright 2010-2013 Nicolas Lartillot, Nicolas Rodrigue, Daniel Stubbs, Jacques Richer.
PhyloBayes is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License
as published by the Free Software Foundation, either version 3 of the L... |
f9a4ee0354c549315ab32184828484baffcf65594f41478a909f9e963975e35e | C++ | 9,740 | 275 | // ***************************************************************************
// bamtools_random.cpp (c) 2010 Derek Barnett, Erik Garrison
// Marth Lab, Department of Biology, Boston College
// ---------------------------------------------------------------------------
// Last modified: 10 December 2012 (DB)
// ------... |
ac65c6ff556713564459d01b44c96e08c189456021ff88d051fa65dd3b862a67 | C++ | 9,746 | 262 | #include <hex/api/localization_manager.hpp>
#include <hex/helpers/auto_reset.hpp>
#include <hex/helpers/logger.hpp>
#include <hex/helpers/utils.hpp>
#include <nlohmann/json.hpp>
#include <mutex>
#include <hex/helpers/debugging.hpp>
namespace hex {
namespace LocalizationManager {
constexpr static auto ... |
eea09846952826b408394011b845b126aa8f9512e3ea822698993c739a23760b | C++ | 9,801 | 260 | //
// OpenViBE Tracker
//
// @author J.T. Lindgren
//
// @todo add horizontal scaling support
// @todo add event handlers
// @todo add ruler, stimulations, channel names, a million of other things
#include <openvibe/ov_all.h>
#include <toolkit/ovtk_all.h>
#include <iostream>
#include <mensia/advanced-visualization.h... |
fba5e2567e64d87187273f036cc60d31092a9ac2817b79d52f160b322bc8e4d3 | C++ | 9,805 | 377 |
/********************
PhyloBayes MPI. Copyright 2010-2013 Nicolas Lartillot, Nicolas Rodrigue, Daniel Stubbs, Jacques Richer.
PhyloBayes is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License
as published by the Free Software Foundation, either version 3 of the L... |
3efbea7e132ee2d4ba66e92315fa2e89d0165d82716a3123da683111245faa8d | C++ | 9,840 | 298 | #include <boost/python.hpp>
#include <boost/python/numpy.hpp>
#include <boost/dynamic_bitset.hpp>
#include <iostream>
#include <vector>
#include <cmath>
namespace p = boost::python;
namespace np = boost::python::numpy;
class InTrNo // inTree Node
{
public:
boost::dynamic_bitset<> splitKey;
double suppor... |
0af987661b3195102681cdf0cd2b58fa7cf3a9ee060d634c193e11f9fa7e0706 | C++ | 9,847 | 484 |
/********************
PhyloBayes MPI. Copyright 2010-2013 Nicolas Lartillot, Nicolas Rodrigue, Daniel Stubbs, Jacques Richer.
PhyloBayes is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License
as published by the Free Software Foundation, either version 3 of the L... |
7f4167d1f73b6547893795f180f311450ddf88fcef04c60ef3b85c1736278e6b | C++ | 9,870 | 320 | ///-----------------------------------------------
// Copyright 2011 Wellcome Trust Sanger Institute
// Written by Jared Simpson (js18@sanger.ac.uk)
// Released under the GPL
//-----------------------------------------------
//
// StdAlnTools - Collection of wrappers around the
// stdaln dynamic programming alignment f... |
53a9c8c03eaa7ce2959cb50b92b8f9e503c6f285260bb6e7acd93307889c1a4c | C++ | 9,914 | 318 | //-----------------------------------------------
// Copyright 2011 Wellcome Trust Sanger Institute
// Written by Jared Simpson (js18@sanger.ac.uk)
// Released under the GPL
//-----------------------------------------------
//
// SampledSuffixArray - Data structure holding
// a subset of suffix array positions. From th... |
3f006fddfca88c58fd6830bf79ae8e535d614d246fa15811b9c66b9fe49b2734 | C++ | 9,937 | 264 | ///-------------------------------------------------------------------------------------------------
///
/// \file CKeyboardStimulator.cpp
/// \author Bruno Renier (INRIA/IRISA).
/// \version 1.1.
/// \copyright Copyright (C) 2022 Inria
///
/// This program is free software: you can redistribute it and/or modify
/// i... |
ee4b8c8e9ea6cb535dc2d7bc4370f76a74d8924890cacc9e2bb17c2afc8e69e5 | C++ | 9,977 | 395 | /* -*- mode: C++; indent-tabs-mode: nil; -*-
*
* This file is a part of LEMON, a generic C++ optimization library.
*
* Copyright (C) 2003-2013
* Egervary Jeno Kombinatorikus Optimalizalasi Kutatocsoport
* (Egervary Research Group on Combinatorial Optimization, EGRES).
*
* Permission to use, modify and distribut... |
400267d76e818f249b4067eb721be6a69762339127816fbc4014880606931b88 | C++ | 10,060 | 336 | #include "ovkCPluginModule.h"
#include <map>
#include <vector>
#if defined TARGET_OS_Linux || defined TARGET_OS_MacOS
#include <dlfcn.h>
#elif defined TARGET_OS_Windows
#include <windows.h>
#else
#endif
namespace OpenViBE {
namespace Kernel {
class CPluginModuleBase : public TKernelObject<IPluginModule>
{
public... |
284e2c234fce4bba165c01a5d36d8ef313fad6eeca9f709af4f6451040ae8eca | C++ | 10,061 | 237 | ///-------------------------------------------------------------------------------------------------
///
/// \file CBoxHelloBidirectionnalGame.cpp
/// \brief Class of the box that communicates with Hello Bidirectionnal Game.
/// \author Thibaut Monseigne (Inria).
/// \version 1.0.
/// \date 24/02/2021
/// \copyright C... |
3abcf0f1219abfd12d72b8846df219ba63e214ce048e9149cb99c66e7f9932a0 | C++ | 10,067 | 292 | /*
# =============================================================================
# Copyright (c) 2016 - 2021 Blue Brain Project/EPFL
#
# See top-level LICENSE file for details.
# =============================================================================
*/
#include <map>
#include <vector>
#include "coreneuron/co... |
7c91a8716b1c8f20bf800def0f8b3225e77a6487cdcfd5423da24cd1ad367097 | C++ | 10,095 | 270 | /*******************************************************************************
Copyright 2006-2012 Lukas Käll <lukas.kall@scilifelab.se>
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
http:... |
6d25fe42f918c96a98aa3de25a74f245dd664a3ba2aabeff3f8b53ea7d20155e | C++ | 10,119 | 230 | /****
DIAMOND protein sequence aligner
Copyright (C) 2012-2026 Benjamin J. Buchfink
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later vers... |
a96fd00b501e3fd09b862747835a5273590a2efe2ec6533095ac24da6eb6b6af | C++ | 10,129 | 221 | #include <hex/api/content_registry/data_processor.hpp>
#include <hex/data_processor/node.hpp>
#include <numeric>
#include <algorithm>
#include <cmath>
namespace hex::plugin::builtin {
class NodeArithmeticAdd : public dp::Node {
public:
NodeArithmeticAdd() : Node(
"hex.builtin.nodes.arithm... |
b653b3c5ed32cd2295496dddb82f124605ce9f7d23a64cf3df330f1a962cfe4c | C++ | 10,130 | 378 |
/********************
PhyloBayes MPI. Copyright 2010-2013 Nicolas Lartillot, Nicolas Rodrigue, Daniel Stubbs, Jacques Richer.
PhyloBayes is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License
as published by the Free Software Foundation, either version 3 of the L... |
1a0f0204ef9941bdca2007329fe54e3c0d4748c29ff149834eaf4a9f0df0073e | C++ | 10,133 | 250 | ///-------------------------------------------------------------------------------------------------
///
/// \file CBoxAlgorithmMatrix3dTo2d.cpp
/// \brief Implementation of the box Matrix3dTo2d
/// \author Arthur DESBOIS (INRIA).
/// \version 0.0.1.
/// \date Fri Feb 12 15:13:00 2021.
///
/// \copyright Copyright (C) ... |
acd258f2dba34209fd2b184763a31448742913b2122164f9c243cc2ef99e978e | C++ | 10,148 | 210 | ///-------------------------------------------------------------------------------------------------
///
/// \file CAlgorithmConfusionMatrix.cpp
/// \author Laurent Bonnet (INRIA/IRISA)
/// \version 1.0.
/// \copyright Copyright (C) 2022 Inria
///
/// This program is free software: you can redistribute it and/or modif... |
018c59875eab176926f9a66c557a68f8973c45ef9a2fadff73b66ccd20fceae7 | C++ | 10,213 | 292 | //-----------------------------------------------
// Copyright 2009 Wellcome Trust Sanger Institute
// Written by Jared Simpson (js18@sanger.ac.uk)
// Released under the GPL
//-----------------------------------------------
//
// SGUtils - Data structures/Functions related
// to building and manipulating string graphs
... |
0e90d1b438f822175024bb07bf01f44210764658ed93c7852510c3a4e63999c1 | C++ | 10,262 | 331 | ///----------------------------------------------
// Copyright 2011 Wellcome Trust Sanger Institute
// Written by Jared Simpson (js18@sanger.ac.uk)
// Released under the GPL
//-----------------------------------------------
//
// StringThreader - Iteratively construct a
// string representing a walk through an assembly... |
2e27e54645c8d069c5618bd8cb7f5cd13f1fd58f88d5b612d12f5fe4db80476b | C++ | 10,325 | 239 | ///-------------------------------------------------------------------------------------------------
///
/// \file CBoxAlgorithmSpectralAnalysis.cpp
/// \brief Classes implementation for the Box Spectral Analysis.
/// \author Laurent Bonnet / Quentin Barthelemy (Mensia Technologies).
/// \version 1.2.
/// \copyright C... |
608f644bfe7bf7436f869b990c286eea6588144c6f337167c4c5bb769b14a513 | C++ | 10,332 | 233 | #include "ovpCAlgorithmUnivariateStatistics.h"
#include <algorithm>
namespace OpenViBE {
namespace Plugins {
namespace SignalProcessing {
// ________________________________________________________________________________________________________________
//
bool CAlgoUnivariateStatistic::initialize()
{
ip_matrix... |
fce2d126475cdeee74305eed60455b497fbdd4aae3887acddcf32e8d0b80e93b | C++ | 10,352 | 226 | #include "CPluginObjectDescEnumBoxTemplateGenerator.hpp"
#include <fs/Files.h>
#include <iostream>
#include <fstream>
#include <map>
#include <vector>
#include <algorithm>
namespace OpenViBE {
namespace PluginInspector {
static std::map<int, char> indentCharacters = { { 0, '=' }, { 1, '-' }, { 2, '~' }, { 3, '+' } ... |
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