sha256 stringlengths 64 64 | language stringclasses 28
values | size int32 1 491k | lines int32 1 23.2k | content stringlengths 1 200k |
|---|---|---|---|---|
c7e5acb3df0d678ad658f067ff5ddba530c4536b70e6836fca1eb05849e98879 | C/C++ | 1,993 | 57 | #pragma once
#include "../../ovp_defines.h"
#include <openvibe/ov_all.h>
#include <toolkit/ovtk_all.h>
#include <ebml/IWriter.h>
#include <ebml/IWriterHelper.h>
#include <ebml/TWriterCallbackProxy.h>
namespace OpenViBE {
namespace Plugins {
namespace StreamCodecs {
class CEBMLBaseEncoder : public Toolkit::TAlgorithm... |
cdf63468bb6d4c6aab394de45b20d2d3397f8996092b4c9dd87055bb021918f2 | C/C++ | 1,994 | 69 | ///-----------------------------------------------
// Copyright 2010 Wellcome Trust Sanger Institute
// Written by Jared Simpson (js18@sanger.ac.uk)
// Released under the GPL
//-----------------------------------------------
//
// StringGraphGenerator - Iteratively construct
// a local String Graph using the FM-index
... |
311b1a41aaccd3b8a1a9aaae1e5f6772e913f88388f6c3d6a1a78d0cc8257833 | C/C++ | 1,996 | 57 | #pragma once
#include "../ovp_defines.h"
#include <openvibe/ov_all.h>
#include <toolkit/ovtk_all.h>
namespace OpenViBE {
namespace Plugins {
namespace Examples {
class CBoxAlgorithmClock final : public Toolkit::TBoxAlgorithm<IBoxAlgorithm>
{
public:
void release() override { delete this; }
uint64_t getClockF... |
e268ee2217a625d0acdc45287d5c8d35a23fa71e56b954361cdb97a97ec84da8 | C/C++ | 1,997 | 93 | /**
* Copyright (c) 2017 rxi
*
* This library is free software; you can redistribute it and/or modify it
* under the terms of the MIT license. See `microtar.c` for details.
*/
#ifndef MICROTAR_H
#define MICROTAR_H
#include <stdio.h>
#include <stdlib.h>
#if defined(__cplusplus)
extern "C" {
#endif
#define MTAR_... |
c05f4e31e37e308af1eada73b76df3b699489ab327efbceb06c187ecb0e62703 | C/C++ | 2,008 | 53 |
/********************
PhyloBayes MPI. Copyright 2010-2013 Nicolas Lartillot, Nicolas Rodrigue, Daniel Stubbs, Jacques Richer.
PhyloBayes is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License
as published by the Free Software Foundation, either version 3 of the L... |
390ce86f64b6bd927334b058fc5d45aee66cde7cdc6052e5edeae5fdd687a782 | C/C++ | 2,009 | 57 |
/********************
PhyloBayes MPI. Copyright 2010-2013 Nicolas Lartillot, Nicolas Rodrigue, Daniel Stubbs, Jacques Richer.
PhyloBayes is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License
as published by the Free Software Foundation, either version 3 of the L... |
b2b8c13c3d7beb723ea31b8468ffc2c1bb2003150e6b0a1fb0c44746dc183dc2 | C/C++ | 2,009 | 73 |
/********************
PhyloBayes MPI. Copyright 2010-2013 Nicolas Lartillot, Nicolas Rodrigue, Daniel Stubbs, Jacques Richer.
PhyloBayes is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License
as published by the Free Software Foundation, either version 3 of the L... |
3f255d10f397629f1c110365a8513ac63e2884eb77937a68b1d6942eeea30ab9 | C/C++ | 2,014 | 73 | #pragma once
#include "ovasIDriver.h"
#include "../ovasCHeader.h"
#include "../ovasCSettingsHelper.h"
#include "../ovasCSettingsHelperOperators.h"
#include "ovasCSmartingAmp.h"
namespace OpenViBE {
namespace AcquisitionServer {
/**
* \class CDriverMBTSmarting
* \author mBrainTrain dev team (mBrainTrain)
* \date ... |
29de9d2f2a95e95ad41d5e01fef59cd11c5063d28a6940d228260e6e08c2b65f | C/C++ | 2,016 | 58 | #pragma once
#include "../../ovp_defines.h"
#include <openvibe/ov_all.h>
#include <toolkit/ovtk_all.h>
#include <ebml/IReader.h>
#include <ebml/IReaderHelper.h>
#include <ebml/TReaderCallbackProxy.h>
namespace OpenViBE {
namespace Plugins {
namespace StreamCodecs {
class CEBMLBaseDecoder : public Toolkit::TAlgorithm... |
4243b51ab15b672d350a590f2432770dc936172404ea07597a8cccbde9072452 | C/C++ | 2,019 | 69 | #include <stdio.h>
#include <math.h>
#include <float.h> // for DBL_EPSILON
#include <stdlib.h>
//#include "random.h"
//#include <libc.h> // for srandom
#include "pmatrices.h"
#include "util.h"
//typedef double (*MinimizeFxn) (double *);
typedef struct {
int nl;
double dmin;
double ldt;
double qf1;
doubl... |
ebba93ecca2436097e7cefa7669a9895d871934d99827a618456b047ebf5a54f | C/C++ | 2,027 | 65 | #pragma once
#if defined TARGET_HAS_ThirdPartyGUSBampCAPI_Linux
#include "../ovasCConfigurationBuilder.h"
#include "ovasIDriver.h"
#include <gtk/gtk.h>
#include <gdk/gdk.h>
#include <gAPI.h>
#include <cstdio>
#include <iostream>
#include <string>
#include <cstring>
#include <sstream>
namespace OpenViBE {
namespace ... |
6258c5c348db3c4f9fb45e0496201f6b6bac95fa7f0400e62b98b2a25a42d659 | C/C++ | 2,028 | 54 | //
// OpenViBE Tracker
//
#pragma once
#include "CodecsAll.h"
#include "Stream.h"
namespace OpenViBE {
namespace Tracker {
/**
* \class StreamFactory
* \brief A factory method returning an empty Stream object of the requested type
* \author J. T. Lindgren
*
*/
class StreamFactory
{
public:
// Factory
... |
68a96b215f4b1664d3f11f47aadbdaf26538460f36d790a5c29c75da54abb1cc | C/C++ | 2,028 | 54 | #pragma once
#include "../../ovp_defines.h"
#include "ovpCStreamedMatrixEncoder.h"
namespace OpenViBE {
namespace Plugins {
namespace StreamCodecs {
class CChannelUnitsEncoder final : public CStreamedMatrixEncoder
{
public:
void release() override { delete this; }
bool initialize() override;
bool uninitia... |
2deb970d8aa47374e7022cd0b68e8c465601406f03d7dd5665bc88b697cc29b6 | C/C++ | 2,030 | 74 | #ifndef SNOWMAN_ASSEMBLY_BAM_WALKER_H__
#define SNOWMAN_ASSEMBLY_BAM_WALKER_H__
#include "SeqLib/BamReader.h"
#include "AlignedContig2.h"
#include "SnowmanBamWalker.h"
/** Walk along a BAM file generated from a de novo assembly,
* realigned to the genome (preferably by BWA-MEM).
*/
class AssemblyBamWalker: public ... |
46a65621e1ad616b827aeefda2e1971a67ff83c88e0330efc71ae26259b29a73 | C/C++ | 2,030 | 53 |
/********************
PhyloBayes MPI. Copyright 2010-2013 Nicolas Lartillot, Nicolas Rodrigue, Daniel Stubbs, Jacques Richer.
PhyloBayes is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License
as published by the Free Software Foundation, either version 3 of the L... |
cfb62e9432c4a942d6ed106fef9605f449b19d674718385d6011af0fe141f674 | C/C++ | 2,032 | 49 | #pragma once
#include <toolkit/ovtk_all.h>
#define OVP_ClassId_BoxAlgorithm_Null OpenViBE::CIdentifier(0x601118A8, 0x14BF700F)
#define OVP_ClassId_BoxAlgorithm_NullDesc OpenViBE::CIdentifier(0x6BD21A21, 0x0A5E685A)
namespace OpenVi... |
68741de5a5c60f23caffc9f466dc0066b7fcceb7341062230c5dafcba7ac1094 | C/C++ | 2,036 | 74 | //-----------------------------------------------
// Copyright 2009 Wellcome Trust Sanger Institute
// Written by Jared Simpson (js18@sanger.ac.uk)
// Released under the GPL license
//-----------------------------------------------
//
// ReadTable - A 0-indexed table of reads
//
#ifndef SNOWS_READTABLE_H
#define SNOWS_... |
1fe665678a58f450c805db7f35a43ad303445e4e09435bdb9a22ebc7a536026f | C/C++ | 2,040 | 77 | // #pragma once
// #include <unordered_map>
// #include <cstdint>
// #include <iostream>
// #include "Histogram.h"
// #include "SeqLib/BamRecord.h"
// /** Store information pertaining to a given read group *
// *
// * This class will collect statistics on number of: read, supplementary reads, unmapped reads,... |
03f8e8f6d88b7c416b67c792cea32b971a00fc9e6fdd48f01b73d379a20dffba | C/C++ | 2,041 | 76 | ///-----------------------------------------------
// Copyright 2010 Wellcome Trust Sanger Institute
// Written by Jared Simpson (js18@sanger.ac.uk)
// Released under the GPL
//-----------------------------------------------
//
// ClusterProcess - Compute clusters of overlapping reads
//
#ifndef CLUSTERPROCESS_H
#defin... |
210d9fce01eda9b26ff2d7ee793c52e1248b2c94d1067d75e63106428af18ab1 | C/C++ | 2,049 | 63 | /*******************************************************************************
"A Collection of Useful C++ Classes for Digital Signal Processing"
By Vinnie Falco
Official project location:
https://github.com/vinniefalco/DSPFilters
See Documentation.cpp for contact information, notes, and bibliography.
----------... |
094709bf8192055e60baba15ec4e86b9fa92d59eaf1ed33de39aebe1b7b295ea | C/C++ | 2,053 | 63 | /**
* SPDX-FileCopyrightText: Inria <tristan.cabel@inria.fr>
* SPDX-License-Identifier: AGPL-3.0-only
*/
#pragma once
#include <float.h>
#include "../ov_defines.h"
#include "parameterTraits.h"
namespace OpenViBE {
namespace Parameters {
class OV_API ParameterDouble : public ParameterBase<double, ParameterDouble>
... |
a7bf96024b840096c3ec6c65460ad516b19e73b5f48ad8161c52ce641c42d8c0 | C/C++ | 2,054 | 54 | /*
* Copyright (c) 2011 The WebRTC project authors. All Rights Reserved.
*
* Use of this source code is governed by a BSD-style license
* that can be found in the LICENSE file in the root of the source
* tree. An additional intellectual property rights grant can be found
* in the file PATENTS. All contribut... |
dc8ff665de17fe27a637a4d5f2b1a254297d8f9e2f226deaf23c7671ffa6e2bc | C/C++ | 2,057 | 74 | #pragma once
#include "ovIAttributable.h"
namespace OpenViBE {
namespace Kernel {
/**
* \class IComment
* \author Yann Renard INRIA
* \date 2010-04-27
* \brief A comment class for scenarios
* \ingroup Group_Scenario
* \ingroup Group_Kernel
*
* This interface can be used in order to fully describe an
* OpenVi... |
31b5091226c5be459d97659f2846f6ade7a33814ca15216d74d2ff3d174e8bcc | C/C++ | 2,058 | 87 | /*****************************************************************************
* SV_VcfVariant.h
* (c) 2014 - Ryan M. Layer
* Hall Laboratory
* Quinlan Laboratory
* Department of Computer Science
* Department of Biochemistry and Molecular Genetics
* Department of Public Health Sciences and Center for Public Heal... |
ecb01113a3badbd4cd6441c990c968f4120d2da1d4e1401c1d3805430c9522ae | C/C++ | 2,070 | 78 | ///-------------------------------------------------------------------------------------------------
/// \copyright Copyright (C) 2014, Mensia Technologies SA. All rights reserved.
/// Rights transferred to Inria, contract signed 21.11.2014
///----------------------------------------------------------------------------... |
ed6c8e889ac5a326f1c140fccb2b60ac508d5118a5bc2518b0ef2cb924448c1e | C/C++ | 2,074 | 55 | /**
* SPDX-FileCopyrightText: Inria <thomas.prampart@inria.fr>
* SPDX-License-Identifier: AGPL-3.0-only
*/
#pragma once
#include <ov_common_defines.h>
#include <openvibe/CIdentifier.hpp>
namespace OpenViBE {
namespace Kernel {
/**
* Class CScenarioParameterConnection
*
* This class represents a link between ... |
90d614f01e4f4e824b9fc067ba51d8db613695d455a3edb215b74d609ae9ecf3 | C/C++ | 2,076 | 89 | /*
* HID driver for OpenViBE
*
* \authors (NeuroServo, NeuroTechX)
* \developer (Innocent Aguie)
* \date Wed Nov 23 00:24:00 2016
*
*/
#pragma once
#if defined TARGET_OS_Windows
#if defined TARGET_HAS_ThirdPartyNeuroServo
#include <Windows.h>
#include "Hidsdi.h"
#include <thread>
#include "HidDeviceNotifier.h"
cla... |
95225730c98396b63e9136ad2d16a3b79ca4228ebab72c4cc1482eabc08d205d | C/C++ | 2,085 | 62 | /*******************************************************************************
"A Collection of Useful C++ Classes for Digital Signal Processing"
By Vinnie Falco
Official project location:
https://github.com/vinniefalco/DSPFilters
See Documentation.cpp for contact information, notes, and bibliography.
----------... |
9bd984cfbbdfb0e93f2c1a8995d21941370c2779724d70cb00c9d9f5eaf31553 | C/C++ | 2,086 | 61 | #pragma once
#ifdef TARGET_HAS_ThirdPartyOpenViBEPluginsGlobalDefines
#include "../../ovtk_base.h"
#include "ovtkTStreamedMatrixDecoder.h"
namespace OpenViBE {
namespace Toolkit {
template <class T>
class TFeatureVectorDecoderLocal : public T
{
protected:
using T::m_codec;
using T::m_boxAlgorithm;
usin... |
508432fcb20d5f35e64bb59f9a28c2a3c0148d8dbba2991e095bab1f22347733 | C/C++ | 2,089 | 54 | #pragma once
#include "../../ovp_defines.h"
#include "ovpCStreamedMatrixEncoder.h"
namespace OpenViBE {
namespace Plugins {
namespace StreamCodecs {
class CSpectrumEncoder final : public CStreamedMatrixEncoder
{
public:
void release() override { delete this; }
bool initialize() override;
bool uninitialize... |
3c5975825e516d73c21387c01506928550ad6dd0d269571fa57f3a441637df17 | C/C++ | 2,092 | 48 | #pragma once
#include "../ovkTKernelObject.h"
#include "ovkTAttributable.h"
namespace OpenViBE {
namespace Kernel {
class CScenario;
class CLink final : public TAttributable<TKernelObject<ILink>>
{
public:
CLink(const IKernelContext& ctx, CScenario& ownerScenario) : TAttributable<TKernelObject<ILink>>(ctx), m_... |
57c7a8a990b0f053755c12f6f6320ee592f275533dfdd7edeb6e53ab081535d0 | C/C++ | 2,092 | 70 | #pragma once
#include "ovIObserver.h"
#include "ov_defines.h"
namespace OpenViBE {
class IObserver;
/**
* \class CObservable
* \author Guillaume Serrière (Inria/Loria)
* \date 2014-11-7
* \brief OpenViBE Observable class
*
* This class furnished all mecanisms to handle the Observable part of the Observer/Observable
... |
314f9b3d07ad70185d87f9767979205a81f663e7f3871e025e4ab65bcae45541 | C/C++ | 2,097 | 57 |
/********************
PhyloBayes MPI. Copyright 2010-2013 Nicolas Lartillot, Nicolas Rodrigue, Daniel Stubbs, Jacques Richer.
PhyloBayes is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License
as published by the Free Software Foundation, either version 3 of the L... |
ec928e0f2edd87f01232aba02cc7f72f94a17cb6244852ccbb57baad781b0c17 | C/C++ | 2,100 | 66 | #pragma once
#include "../ovkTKernelObject.h"
#include <system/ovCChrono.h>
#include <map>
#include <list>
namespace OpenViBE {
namespace Kernel {
enum class ESchedulerInitialization { Success, BoxInitializationFailed, Failed };
class CSimulatedBox;
class CChunk;
class CPlayer;
class CScheduler final : public TKern... |
43af836e5b15f7983fbfd33244db6cd4efdb94d0cfb95194945f777779123507 | C/C++ | 2,111 | 70 | /*****************************************************************************
* SV_Bedpe.h
* (c) 2012 - Ryan M. Layer
* Hall Laboratory
* Quinlan Laboratory
* Department of Computer Science
* Department of Biochemistry and Molecular Genetics
* Department of Public Health Sciences and Center for Public Health Ge... |
5d509edce942b39ed8405dda390aa9dc17c658f5883b17a8d236157e86bf689f | C/C++ | 2,121 | 68 | #pragma once
#ifdef TARGET_HAS_ThirdPartyOpenViBEPluginsGlobalDefines
#include "../../ovtk_base.h"
namespace OpenViBE {
namespace Toolkit {
template <class T>
class TStreamStructureDecoderLocal : public T
{
protected:
using T::m_codec;
using T::m_boxAlgorithm;
using T::m_iBuffer;
bool initializeImp... |
b4c79146eb0c49ccb6bf201a617da5e7156faaaa6a8d5308c9e829fd30593c69 | C/C++ | 2,131 | 59 | #pragma once
#include "../../ovp_defines.h"
#include "ovpCStreamedMatrixDecoder.h"
#include <stack>
namespace OpenViBE {
namespace Plugins {
namespace StreamCodecs {
class CSignalDecoder final : public CStreamedMatrixDecoder
{
public:
void release() override { delete this; }
bool initialize() override;
bo... |
849b3d5cf51abb53fa66084333c3c9444346b2ad7f9b57572663177c75bcf9d7 | C/C++ | 2,135 | 63 | #pragma once
#ifdef TARGET_HAS_ThirdPartyOpenViBEPluginsGlobalDefines
#include "../../ovtk_base.h"
#include "ovtkTStreamedMatrixEncoder.h"
namespace OpenViBE {
namespace Toolkit {
template <class T>
class TFeatureVectorEncoderLocal : public T
{
protected:
// the feature vector stream is just a streamed matrix w... |
c42e6ec67ec5e59544181fbfdb0b9797596c4666574a8ec2e58485a40de24670 | C/C++ | 2,139 | 56 | ///-----------------------------------------------
// Copyright 2012 Wellcome Trust Sanger Institute
// Written by Jared Simpson (js18@sanger.ac.uk)
// Released under the GPL
//-----------------------------------------------
//
// KmerOverlaps - Overlap computation functions
// seeded by exact kmer matches
//
#ifndef K... |
7ee7887e4e59b85dacb6daca078a3d4611a06cf64acae85b12d8c477f3b92316 | C/C++ | 2,143 | 57 |
/********************
PhyloBayes MPI. Copyright 2010-2013 Nicolas Lartillot, Nicolas Rodrigue, Daniel Stubbs, Jacques Richer.
PhyloBayes is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License
as published by the Free Software Foundation, either version 3 of the L... |
ba9d4072a81ef4652a9a673b852ca13b2f17cabc5f70174c7577fedf92855551 | C/C++ | 2,146 | 63 | /**
* SPDX-FileCopyrightText: Inria <thomas.prampart@inria.fr>
* SPDX-License-Identifier: AGPL-3.0-only
*/
/**
* Class ScenarioParameterConnection
*
* This class stores the information of a link between a parameter of the scenario and a box parameter.
* It is a Q_OBJECT as it is used in QML.
*
* The properti... |
b885b63c1aaa681680d16aedc997f6cd787ac1444bf6029b8d926e415d8ceaa3 | C/C++ | 2,151 | 101 |
/********************
PhyloBayes MPI. Copyright 2010-2013 Nicolas Lartillot, Nicolas Rodrigue, Daniel Stubbs, Jacques Richer.
PhyloBayes is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License
as published by the Free Software Foundation, either version 3 of the L... |
0ac88b037e9be9f72051ac4a3af248423f22a908117eaffaf1bb8bf7c055b113 | C/C++ | 2,153 | 83 | #pragma once
#if defined TARGET_HAS_ThirdPartyOpenAL
#include "ovasIDriver.h"
#include "../ovasCHeader.h"
#include <openvibe/ov_all.h>
#include "../ovasCSettingsHelper.h"
#include "../ovasCSettingsHelperOperators.h"
#if defined TARGET_OS_Windows
#include <al.h>
#include <alc.h>
#elif defined TARGET_OS_Linux
#in... |
7297c86483729a05c1b6409f6527ea770b37fff77698d1728b47f73b7c1ee3c4 | C/C++ | 2,155 | 53 | #pragma once
#include "ovkCBoxAlgorithmLogManager.h"
#include "../ovkTKernelObject.h"
namespace OpenViBE {
namespace Kernel {
class CSimulatedBox;
class CPlayerContext final : public TKernelObject<IPlayerContext>
{
public:
CPlayerContext(const IKernelContext& ctx, CSimulatedBox* pSimulatedBox);
~CPlayerCont... |
951e20854bdac787277a29bbca3ee047273bba41d141d04580bb3527e66143ca | C/C++ | 2,157 | 66 | #pragma once
#include "ovIPluginObject.h"
namespace OpenViBE {
namespace Kernel {
class IAlgorithmContext;
} // namespace Kernel
namespace Plugins {
/**
* \class IAlgorithm
* \author Yann Renard (INRIA/IRISA)
* \date 2007-11-06
* \brief Abstract algorithm, base element of OpenViBE processing objects
* \ingrou... |
d6acd9e31a02f2e442d4404a38d8b8bb9b4dd5b53eca8533514b8c3bfaf716e9 | C/C++ | 2,159 | 44 |
/********************
PhyloBayes MPI. Copyright 2010-2013 Nicolas Lartillot, Nicolas Rodrigue, Daniel Stubbs, Jacques Richer.
PhyloBayes is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License
as published by the Free Software Foundation, either version 3 of the L... |
203c6d2b2ca4f1d3ca2675080a4b72815315d0f092e691cbd4ee2e44d0751bcf | C/C++ | 2,160 | 66 | // SPDX-FileCopyrightText: Inria <thomas.prampart@inria.fr>
// SPDX-License-Identifier: AGPL-3.0-only
#pragma once
#include <openvibe/ov_all.h>
#include <QByteArray>
#include <QList>
#include <QObject>
#include <QPoint>
namespace OpenViBE {
namespace Designer {
class ScenarioSerializer;
/**
* @brief Copy/paste o... |
675cc36d90291312d72054a9702054aa9aea29b67eb5b6b01bf969780dd041fd | C/C++ | 2,167 | 61 |
/********************
PhyloBayes MPI. Copyright 2010-2013 Nicolas Lartillot, Nicolas Rodrigue, Daniel Stubbs, Jacques Richer.
PhyloBayes is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License
as published by the Free Software Foundation, either version 3 of the L... |
29b74c262299373b4c30605d51b435ac61ad39c1db7f153911243bca8b6e2628 | C/C++ | 2,172 | 62 | /*
# =============================================================================
# Originally errcodes.h from SCoP library, Copyright (c) 1984-90 Duke University
# =============================================================================
# Subsequent extensive prototype and memory layout changes for CoreNEURON
#
... |
5517736fa90c367a0b995505805311532855c7873473786c2ec92a06d45ca9c5 | C/C++ | 2,174 | 78 | #pragma once
#if defined TARGET_HAS_ThirdPartyGUSBampCAPI_Linux
#include "ovasIDriver.h"
#include "../ovasCHeader.h"
#include <openvibe/ov_all.h>
#include "../ovasCSettingsHelper.h"
#include "../ovasCSettingsHelperOperators.h"
#include <gAPI.h>
#include "Queue.h"
namespace OpenViBE {
namespace AcquisitionServer {
... |
40634d964a8afa24fd94d7d9cc39f7e7b46426055a8998d5e35124d8e0276478 | C/C++ | 2,175 | 72 | /**
* SPDX-FileCopyrightText: Inria <tristan.cabel@inria.fr>
* SPDX-License-Identifier: AGPL-3.0-only
*/
#pragma once
#include <QtCore>
#include "ov_parameters_object_export.h"
#include <openvibe/parameters/parameterTraits.h>
namespace OpenViBE {
namespace Parameters {
class OV_PARAMETERS_OBJECT_EXPORT ParameterO... |
f552b9376f89da3c901e11daa8f05d2a345ff4e1339990f88b93c8542a9603bb | C/C++ | 2,175 | 79 | /*****************************************************************************
* SV_PairReader.h
* (c) 2012 - Ryan M. Layer
* Hall Laboratory
* Quinlan Laboratory
* Department of Computer Science
* Department of Biochemistry and Molecular Genetics
* Department of Public Health Sciences and Center for Public Heal... |
006eec9e8f14ddd2be11cda8bfa7c4e21a18e66e00afd65650380b1c8f0aef55 | C/C++ | 2,179 | 41 | #pragma once
#include "../ovtk_base.h"
namespace OpenViBE {
namespace Toolkit {
class OVTK_API ISignalTrial : public IObject
{
public:
virtual bool setSamplingRate(size_t sampling) = 0;
virtual bool setChannelCount(size_t count) = 0;
virtual bool setChannelName(size_t index, const char* name) = 0;
vi... |
fa7c20a1f1b82c9fe1fffc333ba70fb0a5fefd265baf7311130b6a706ab25f6c | C/C++ | 2,184 | 75 | #pragma once
#include "../ovIKernelObject.h"
namespace OpenViBE {
namespace Kernel {
/**
* \class IMetadata
* \author Jozef Legeny
* \date 2016-10-11
* \brief Metadata class for scenarios
*
* Scenario can contain string metadata for the purpose of being used by applications. Each piece of metadata is identified... |
a96bd8545bc2fdb13c680ca3ce3c2e84001610c188965716b929dc30def27336 | C/C++ | 2,187 | 47 | #pragma once
#include "../ovkTKernelObject.h"
#include "ovkCAlgorithmProxy.h"
namespace OpenViBE {
namespace Kernel {
class CAlgorithmContext final : public TKernelObject<IAlgorithmContext>
{
public:
CAlgorithmContext(const IKernelContext& ctx, CAlgorithmProxy& algorithmProxy, const Plugins::IPluginObjectDesc& /... |
68dbbce8286b241652068265de377948efb90e9df0d49ee4a795205506c1cfb0 | C/C++ | 2,188 | 74 | //-----------------------------------------------
// Copyright 2009 Wellcome Trust Sanger Institute
// Written by Jared Simpson (js18@sanger.ac.uk)
// Released under the GPL license
//-----------------------------------------------
//
// ReadTable - A 0-indexed table of reads
//
#ifndef READTABLES_H
#define READTABLES_... |
3315eb1fd0bc1ac48b70fbc93d19fb826738173f9882b494541b0221ccd9eba7 | C/C++ | 2,191 | 79 | #pragma once
#if defined(TARGET_HAS_ThirdPartyMCS)
#include <vector>
#include "ovasIDriver.h"
#include "../../ovasCHeader.h"
#include <openvibe/ov_all.h>
#include "../../ovasCSettingsHelper.h"
#include "../../ovasCSettingsHelperOperators.h"
#include "NVX.h"
namespace OpenViBE {
namespace AcquisitionServer {
/**
* ... |
436a77e0ace86513cf30839c181265722eca69d5bdc7272dcdea44226cc77e6b | C/C++ | 2,191 | 90 | #pragma once
#include <thread>
#include <mutex>
#include <condition_variable>
#include <stack>
#include <map>
#include <vector>
#include <openvibe/ov_all.h>
#include <openvibe/CMatrix.hpp>
#include <socket/IConnectionServer.h>
#include <fs/Files.h>
#include <ebml/CReader.h>
#include <ebml/CReaderHelper.h>
#includ... |
a938dc692e9a8ffb1a4aa5452c55b7e0ab538db5853a12292f35258c85ece58b | C/C++ | 2,194 | 65 | #pragma once
#include "../ovIKernelObject.h"
namespace OpenViBE {
namespace Kernel {
class IPlayer;
/**
* \class IPlayerManager
* \author Yann Renard (INRIA/IRISA)
* \date 2006-07-21
* \brief The manager responsible for scenario playback
* \ingroup Group_Player
* \ingroup Group_Kernel
*
* The player manager ... |
929757710280c21c4cdaca11366246c245827b6b50cd2910226c51e64a49423c | C/C++ | 2,196 | 72 | #ifndef ADMM_H
#define ADMM_H
#include "../external/glmgen/include/cs.h"
/**
* ...
*
* @param n data length
* @param x data locations
* @param y data observations
* @param w data observation weights
* @param delta MSE constraint (noise var estimate)
* @param beta primal variable
* @param alpha
* @param u
*... |
c3e17200fcf6645f097f4ad1c677b4811aadcabf26b0cca4cbb75c86ac3fbe14 | C/C++ | 2,199 | 62 | #pragma once
#include "../../ovp_defines.h"
#include "ovpCStreamedMatrixDecoder.h"
#include <stack>
namespace OpenViBE {
namespace Plugins {
namespace StreamCodecs {
class CChannelUnitsDecoder final : public CStreamedMatrixDecoder
{
public:
void release() override { delete this; }
bool initialize() override;
... |
04d58c7327f75a4b8bf73158cee279b02f93e4b782b1d4d3c5be5ea88a509886 | C/C++ | 2,200 | 70 | #pragma once
#include <fstream>
#include <ostream>
#include <vector>
#include <map>
#include "ovpCBitfield.h"
namespace BCI2000 {
/**
* \class CBCI2000ReaderHelper
* \author Olivier Rochel (INRIA)
* \brief BCI2000 file format parser and utilities. Uses the m_oBitfield utility class.
**/
class CBCI2000ReaderHelper
{
p... |
8c292a1ed7478d2ac394cdecbdf19d6f618ce7ae947b1e9c775222f9ec17703e | C/C++ | 2,200 | 73 | // SPDX-FileCopyrightText: Inria <thomas.prampart@inria.fr>
// SPDX-License-Identifier: AGPL-3.0-only
#pragma once
#include "CBridgeBioSemiActiveThree.h"
#include <AbstractDriver.h>
#include <AbstractDriverBuilder.h>
#include <openvibe/acquisition-messaging/samples.h>
#include <openvibe/parameters/parameterBool.h>
... |
ad49ae20cb70edafe23937a7a617bbcb4015b7bb32cca57b1d3472b3bccfe84c | C/C++ | 2,203 | 64 | #pragma once
#ifdef TARGET_HAS_ThirdPartyBrainProductsAmplifierSDK
#include "../ovasCConfigurationBuilder.h"
#include "../brainproducts-base/CDriverBrainProductsBase.h"
#include <gtk/gtk.h>
namespace OpenViBE {
namespace AcquisitionServer {
/**
* \class CConfigurationBrainProductsLiveAmp
* \author Ratko Petrovic ... |
7397e8a00433f4460e6d37fa941f9562dfc65607c8fc1764e68df6c9f3658f9d | C/C++ | 2,205 | 77 | #pragma once
#include "../../ovk_tools.h"
#include <openvibe/ov_all.h>
#include <map>
namespace OpenViBE {
namespace Kernel {
template <class T>
class TAttributable : public T
{
public:
explicit TAttributable(const IKernelContext& ctx) : T(ctx) { }
bool addAttribute(const CIdentifier& attributeID, const C... |
37c9cc6b4912e6514677d5eb45b973cc68c3ce163a1f44870557144c270e7632 | C/C++ | 2,208 | 69 | /**
* SPDX-FileCopyrightText: Inria <tristan.cabel@inria.fr>
* SPDX-License-Identifier: AGPL-3.0-only
*/
#pragma once
#include <openvibe/ov_all.h>
#include <thread>
#include <future>
#include <atomic>
#include <functional>
namespace OpenViBE {
namespace Designer {
//bridge to play, pause, stop a player in a threa... |
c3c64f2df2d9d0b2b201a57c12a2fb9bf1dcb7f37a0af83a61c9f2e0a8759d10 | C/C++ | 2,211 | 92 | #pragma once
#include <iostream>
#include <thread>
#include <deque>
#include <vector>
#include "../../../../plugins/processing/file-io/src/ovp_defines.h"
#include <openvibe/ov_all.h>
#include <toolkit/ovtk_all.h>
#include <system/ovCTime.h>
#include <fs/Files.h>
#include "Contexted.h"
namespace OpenViBE {
namespa... |
90ec9340a2f2789742c9005a3d47fde66848fda2232cd7c88467930312cdbcf1 | C/C++ | 2,212 | 78 |
/********************
PhyloBayes MPI. Copyright 2010-2013 Nicolas Lartillot, Nicolas Rodrigue, Daniel Stubbs, Jacques Richer.
PhyloBayes is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License
as published by the Free Software Foundation, either version 3 of the L... |
c51aca850be27a5f42e22bb6725c1ad7be9cd9f6de97efdc6a805dc5523f8e24 | C/C++ | 2,220 | 62 | #pragma once
#include "defines.hpp"
#include <openvibe/ov_all.h>
#include <toolkit/ovtk_all.h>
namespace OpenViBE {
namespace Plugins {
namespace SignalProcessing {
class CBoxAlgorithmMatrixTranspose final : virtual public Toolkit::TBoxAlgorithm<IBoxAlgorithm>
{
public:
void release() override { delete this; }
... |
64734b6e80a970683937932c9852bdd2e0ec16ee0a1bea23cbd31be7bd9215b2 | C/C++ | 2,222 | 65 | /**
* SPDX-FileCopyrightText: Inria <thomas.prampart@inria.fr>
* SPDX-License-Identifier: AGPL-3.0-only
*/
/**
* Class ScenarioParameterConnection
*
* This class stores the information of a link between a parameter of the scenario and a box parameter.
* It is a Q_OBJECT as it is used in QML.
*
* The properti... |
15340274776c03a18c53863ace35df5c392bb11de79bf9a7c2ac5cb4dbb8b7ec | C/C++ | 2,224 | 86 |
/********************
PhyloBayes MPI. Copyright 2010-2013 Nicolas Lartillot, Nicolas Rodrigue, Daniel Stubbs, Jacques Richer.
PhyloBayes is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License
as published by the Free Software Foundation, either version 3 of the L... |
ac4dec50c9ecfd2992f2f01a69fab38b89fb35036ed6e408ce10b732fde0231a | C/C++ | 2,226 | 62 | #pragma once
#include "../ovp_defines.h"
#include <toolkit/ovtk_all.h>
namespace OpenViBE {
namespace Plugins {
namespace Examples {
class CHelloWorld final : public Toolkit::TBoxAlgorithm<IBoxAlgorithm>
{
public:
void release() override { delete this; }
uint64_t getClockFrequency() override;
bool process... |
cb053ab0a30fed35cd7550c97c2e6876c884569e172ab87a1e9a99330f1a4e07 | C/C++ | 2,226 | 61 | #pragma once
#include "../../ovp_defines.h"
#include "ovpCStreamedMatrixDecoder.h"
#include <stack>
namespace OpenViBE {
namespace Plugins {
namespace StreamCodecs {
class CChannelLocalisationDecoder final : public CStreamedMatrixDecoder
{
public:
void release() override { delete this; }
bool initialize() ove... |
d1285f5a91ff074058bfd8dca285670fcf7e0202b2505b2430b38bfe63aa918d | C/C++ | 2,242 | 77 | /* -*- mode: C++; indent-tabs-mode: nil; -*-
*
* This file is a part of LEMON, a generic C++ optimization library.
*
* Copyright (C) 2003-2013
* Egervary Jeno Kombinatorikus Optimalizalasi Kutatocsoport
* (Egervary Research Group on Combinatorial Optimization, EGRES).
*
* Permission to use, modify and distribut... |
f4f84d87cbf1a544a2f16f9b72f3896ba8a6ba7e925daa83f4f3ff4ceb539358 | C/C++ | 2,244 | 60 | /*
* Copyright (c) 2011 The WebRTC project authors. All Rights Reserved.
*
* Use of this source code is governed by a BSD-style license
* that can be found in the LICENSE file in the root of the source
* tree. An additional intellectual property rights grant can be found
* in the file PATENTS. All contribut... |
37c605f354b35d8f43aced51380dbb2505664c31bcec0653b405ddc47a0eb4b5 | C/C++ | 2,247 | 54 | #pragma once
#include "IConnection.h"
namespace Socket {
struct SConnectionDelegate
{
void* data;
bool (*fpOpen)(void*);
bool (*fpClose)(void*);
bool (*fpIsReadyToSend)(void*, size_t);
bool (*fpIsReadyToReceive)(void*, size_t);
size_t (*fpSendBuffer)(void*, const void*, size_t);
size_t (*f... |
d8d7df5ad06759a9b54819abdff8cc891249dac78223193e0ab0d49b3b7666c2 | C/C++ | 2,247 | 65 | #pragma once
#include <list>
#include <queue>
#include <string>
#include <utility>
#include <vector>
#include <mutex>
#include <thread>
#include "AcquisitionManager.h" ///< Include the header file for the AcquisitionManager class.
#include <NetService.h> ///< Include the header file for the NetService class.
#inclu... |
5678d118e130241aefc30101c1ff5383bf212053ba22f226b0fe1eee2863c495 | C/C++ | 2,248 | 83 |
/********************
PhyloBayes MPI. Copyright 2010-2013 Nicolas Lartillot, Nicolas Rodrigue, Daniel Stubbs, Jacques Richer.
PhyloBayes is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License
as published by the Free Software Foundation, either version 3 of the L... |
c2aaa2fec5e9c659c260a7042f63e5d5ce90cc76cf9eb950941fa2b8b28c0e29 | C/C++ | 2,253 | 60 |
/********************
PhyloBayes MPI. Copyright 2010-2013 Nicolas Lartillot, Nicolas Rodrigue, Daniel Stubbs, Jacques Richer.
PhyloBayes is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License
as published by the Free Software Foundation, either version 3 of the L... |
2f1d02d366dc899caaec19d5df2bd76f3d6bcaa6e92ac056c807d938072b92a3 | C/C++ | 2,257 | 80 | #ifndef SVABA_ASSEMBLER_ENGINE_H__
#define SVABA_ASSEMBLER_ENGINE_H__
#include "Util.h"
//#include "contigs.h"
#include "SGUtil.h"
#include "ReadTable.h"
#include "SeqLib/BamRecord.h"
#include "SeqLib/UnalignedSequence.h"
#include "SvabaRead.h"
class svabaAssemblerEngine
{
public:
svabaAssemblerEngine() {}
s... |
60464e6b075a5c8a8bb9dcc2a0d82dc2925723c30ddf37381e6aadd648b60742 | C/C++ | 2,258 | 75 | #pragma once
#include "../ovp_defines.h"
#include <toolkit/ovtk_all.h>
#include <string>
#include <map>
#if defined TARGET_OS_Linux || defined TARGET_OS_MacOS
#include <X11/X.h>
#include <X11/Xlib.h>
#include <X11/Xutil.h>
#endif
namespace OpenViBE {
namespace Plugins {
namespace Tools {
class CMouseCo... |
25fc1f54c80a2428932199c4c59a6e0abac068ad45ba07aec2d87376b78e558e | C/C++ | 2,260 | 80 | // SPDX-FileCopyrightText: Inria <tristan.cabel@inria.fr>
// SPDX-License-Identifier: AGPL-3.0-only
#pragma once
#include <QtCore>
#include <string>
#include <vector>
#include <parametersObject.h>
#include <QQmlEngine>
#include <QQuickItem>
#include "CGrazVisualization.h"
namespace OpenViBE {
namespace Plugins {
n... |
4124cfc494dd5d4e1ac19f3cc9b480dbf61f728efd61e0411393b0ae4749b711 | C/C++ | 2,260 | 77 | /**
* SPDX-FileCopyrightText: Inria <tristan.cabel@inria.fr>
* SPDX-License-Identifier: AGPL-3.0-only
*/
#pragma once
#include <map>
#include <memory>
#include <string>
#include <functional>
#include <any>
#include <nlohmann/json_fwd.hpp>
#include "../ov_defines.h"
namespace OpenViBE {
namespace Parameters {
cl... |
033d89d7bcabeb2c036eb2a291e8e20f309098d3aa2c80a845f2698717e72afb | C/C++ | 2,265 | 63 | #pragma once
#include "../../ovp_defines.h"
#include "ovpCEBMLBaseDecoder.h"
#include <stack>
namespace OpenViBE {
namespace Plugins {
namespace StreamCodecs {
class CStimulationDecoder final : public CEBMLBaseDecoder
{
public:
void release() override { delete this; }
bool initialize() override;
bool unin... |
973d9644f95b62359e3b2c4fccb17f64e7b27786cafdc528aab792cc98336461 | C/C++ | 2,265 | 72 |
/********************
PhyloBayes MPI. Copyright 2010-2013 Nicolas Lartillot, Nicolas Rodrigue, Daniel Stubbs, Jacques Richer.
PhyloBayes is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License
as published by the Free Software Foundation, either version 3 of the L... |
433e2b119ae6d107b6d18b43b6b5a97b484a5641d1027a0373806fe10fce66d7 | C/C++ | 2,267 | 88 | /****
DIAMOND protein sequence aligner
Copyright (C) 2012-2026 Benjamin J. Buchfink
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later vers... |
848d381591a85cfc08c8308cc038041ec39a26ee5b08d0e0e44d76a76712dc49 | C/C++ | 2,271 | 93 | #pragma once
#include <string>
#include <vector>
#include <memory> // std::shared_ptr
#include <openvibe/ov_all.h>
#include <toolkit/ovtk_all.h>
#include "Contexted.h"
// #include "ovkTAttributable.h"
// class StreamBase : public OpenViBE::Kernel::TAttributable<Contexted> {
namespace OpenViBE {
namespace Tracker {... |
9d71abc95d5f523eb32cbac7907954bb80768a2326cfb1d7460a7b2056d04da1 | C/C++ | 2,273 | 67 | #include <QtCore>
#include <QtQml>
#include <QJSValue>
#include "ImpedanceItem.h"
namespace OpenViBE {
namespace AcquisitionServer {
class OVMaster : public QObject
{
Q_OBJECT
QML_ELEMENT
Q_PROPERTY(QStringList drivers READ getDrivers NOTIFY driverChanged)
Q_PROPERTY(QJSValue configParameters R... |
6f4830d1fe193af4a782c5b8a867019c952b1c0bb3f6b80bb9327b9dbdfa22d1 | C/C++ | 2,276 | 84 | #pragma once
/**
* @file ConnectedClient.h
* @brief Declaration of the ConnectedClient class for managing connected clients in a server application.
* @details This class encapsulates the details of a connected client, including its socket, ID, and communication methods.
* @note This class is intended for internal... |
37893353e879c77ac6e5e2fe2a91339069d6a9e51ce3a72d45ef286623d4355b | C/C++ | 2,277 | 69 | /**
* SPDX-FileCopyrightText: Inria <tristan.cabel@inria.fr>
* SPDX-License-Identifier: AGPL-3.0-only
*/
#include <functional>
#include <QtCore>
#pragma once
namespace OpenViBE {
namespace Designer {
class BoxTreeItem;
/**
* @brief The BoxTreeModel class is a tree model of all the available boxes.
* It is a... |
461f585068d3c29379f70a6da43df1df53d83a74469c9f4be1b52e0182a78000 | C/C++ | 2,290 | 63 | ///-------------------------------------------------------------------------------------------------
/// \copyright Copyright (C) 2012, Mensia Technologies SA. All rights reserved.
/// Rights transferred to Inria, contract signed 21.11.2014
///----------------------------------------------------------------------------... |
582459306d8702803ebc2f1a5e4889cec12354fb3aaf398320614853b94758ea | C/C++ | 2,294 | 76 | //-----------------------------------------------
// Copyright 2009 Wellcome Trust Sanger Institute
// Written by Jared Simpson (js18@sanger.ac.uk)
// Released under the GPL license
//-----------------------------------------------
//
// BWTTraverse - bwt traversal algorithms
//
#ifndef BWTTRAVERSE_H
#define BWTTRAVERS... |
9cbd24637c51993b4f968cab78e31024675a5b4d8b5e32d63de21b655e4f84c7 | C/C++ | 2,299 | 43 | ///-------------------------------------------------------------------------------------------------
///
/// \file ovp_defines.h
/// \brief Defines list for Setting, Shortcut Macro and const.
/// \author Thibaut Monseigne (Inria).
/// \version 1.0.
/// \date 12/02/2020.
/// \copyright Copyright (C) 2022 Inria
///
/// ... |
85dcb9d230f3f6d0c7d1496e7298e28f74ff8f6c9a94923fec787ddc22737750 | C/C++ | 2,308 | 70 | #pragma once
#include <vector>
#include <openvibe/ov_all.h>
#include <toolkit/ovtk_all.h>
#include "Encoder.h"
#include "Decoder.h"
#include "TypeError.h"
// This macro makes specializations by instantiating an adapter that handles a type with
// the actual encoder and decoder from the toolkit
#define CODEC_IMPL_... |
1b2147c92e0471a6f72811f10c0c64b9233b9f27f21771400be88ae9c408e33f | C/C++ | 2,311 | 62 | ///-------------------------------------------------------------------------------------------------
///
/// \file ovExceptionHandler.h
/// \copyright Copyright (C) 2022 Inria
///
/// This program is free software: you can redistribute it and/or modify
/// it under the terms of the GNU Affero General Public License as... |
b85e124fa714d32317ed7978fef68d783a6d5eb59e5fe659c47c94f1355a2989 | C/C++ | 2,314 | 48 | #pragma once
// Post-process svaba outputs: merge per-thread files, coordinate-sort BAMs,
// streaming-dedup, sort/dedup/filter bps.txt.gz, filter r2c.txt.gz, and
// optionally split BAMs by QNAME source prefix.
//
// Fully replaces svaba_postprocess.sh. Everything runs natively in C++
// except `samtools sort` (shell... |
5b5c67476cdf1553a3edce0cfdd8e9e4a3c1465c44ba81631d8107e87ddfb77a | C/C++ | 2,315 | 82 | //-----------------------------------------------
// Copyright 2010 Wellcome Trust Sanger Institute
// Written by Jared Simpson (js18@sanger.ac.uk)
// Released under the GPL
//-----------------------------------------------
//
// SGSearch - Algorithms and data structures
// for searching a string graph
//
#ifndef SGSEA... |
2055f44c6251fc20142024926a6d7f61482c8e5689dabbbb4e70082d650ff1df | C/C++ | 2,319 | 86 | /**
* The gMobilab driver was contributed
* by Lucie Daubigney from Supelec Metz
*/
#pragma once
#if defined TARGET_HAS_ThirdPartyGMobiLabPlusAPI
#include "ovasIDriver.h"
#include "../ovasCHeader.h"
#include "../ovasCSettingsHelper.h"
#include "../ovasCSettingsHelperOperators.h"
#include <string>
#ifdef TARGET_... |
454c0194755023ceb8456470885ee5260882d7050c39afeb20a712f72575a323 | C/C++ | 2,321 | 71 | /*
* Copyright (C) 2010 S. Klanke
* F.C. Donders Centre for Cognitive Neuroimaging, Radboud University Nijmegen,
* Kapittelweg 29, 6525 EN Nijmegen, The Netherlands
*
*
*/
#ifndef __rdadefs_h
#define __rdadefs_h
#include "message.h" /* for the integer datytypes */
#ifdef __cplusplus
extern "C" {
#endif... |
8b41bfae2cfa7376d080b62980a28291f46d727119850ca12d60bb121d691e17 | C/C++ | 2,324 | 72 |
/********************
PhyloBayes MPI. Copyright 2010-2013 Nicolas Lartillot, Nicolas Rodrigue, Daniel Stubbs, Jacques Richer.
PhyloBayes is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License
as published by the Free Software Foundation, either version 3 of the L... |
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