sha256 stringlengths 64 64 | language stringclasses 28
values | size int32 1 491k | lines int32 1 23.2k | content stringlengths 1 200k |
|---|---|---|---|---|
4ff2ba9404bb74538d766fd099c5b202de8e948fbe98a2eb70c432a2b7b5f394 | C/C++ | 2,333 | 77 | ///-----------------------------------------------
// Copyright 2011 Wellcome Trust Sanger Institute
// Written by Jared Simpson (js18@sanger.ac.uk)
// Released under the GPL
//-----------------------------------------------
//
// ReadCluster - Generate a cluster of overlapping
// reads using the FM-index
//
#ifndef RE... |
2bdb252fa20a7a5fa27982c722ab375ca40a1cd0e2d313d0ecd604f6f5bc3748 | C/C++ | 2,344 | 82 |
/********************
PhyloBayes MPI. Copyright 2010-2013 Nicolas Lartillot, Nicolas Rodrigue, Daniel Stubbs, Jacques Richer.
PhyloBayes is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License
as published by the Free Software Foundation, either version 3 of the L... |
32bd18292a63072d412157d9d8491e5839b0680a1c2350f3da4e8740974858d8 | C/C++ | 2,345 | 55 | #pragma once
#include "../ovkTKernelObject.h"
namespace OpenViBE {
namespace Kernel {
class CSimulatedBox;
class CBoxAlgorithmLogManager final : public ILogManager
{
public:
CBoxAlgorithmLogManager(const IPlayerContext& playerContext, ILogManager& logManager, CSimulatedBox& simulatedBox)
: m_playerCtx(p... |
cccce3c888654efcd8d09cebcae9b1e6b0a9ae59df6ff54fd55177ab73a88fad | C/C++ | 2,348 | 53 | #pragma once
#include "../../ovp_defines.h"
#include <openvibe/ov_all.h>
#include <toolkit/ovtk_all.h>
#include <xml/IWriter.h>
namespace OpenViBE {
namespace Plugins {
namespace FileIO {
class CAlgorithmXMLScenarioExporter final : public Toolkit::CAlgorithmScenarioExporter, public XML::IWriterCallback
{
public:
... |
fa97100181df6e004e35ec07d73fe3b2c78684ed11831f3e53b6610cbcc163ee | C/C++ | 2,352 | 72 | #pragma once
#include "defines.h"
#include <cstdlib> // For Unix Compatibility
namespace System {
/**
* \class Time
* \brief Static functions to handle time within the framework
*
*/
class System_API Time
{
public:
/**
* \brief Make the calling thread sleep
* \param milliSeconds : sleep duration ... |
19f9a06c199cc37b4c33df58ec6e0b3d3760ffa61632cd46f5a663a3e4cb8466 | C/C++ | 2,354 | 59 | /**
* SPDX-FileCopyrightText: Inria <tristan.cabel@inria.fr>
* SPDX-License-Identifier: AGPL-3.0-only
*/
#pragma once
#include "parameterTraits.h"
#include "../ov_defines.h"
namespace OpenViBE {
namespace Parameters {
/**
* @brief Selection of several values among a fixed set of available values.
*
* Where Para... |
35d7484ff73f6f2177afc75af5765d702fbfae226e3f6af6bd203e7574ddfe3a | C/C++ | 2,354 | 81 | #pragma once
#include "ovkTKernelObject.h"
#include <cstring>
namespace OpenViBE {
namespace Kernel {
template <class TBase, class TType>
class TBaseParameter : public TBase
{
public:
TBaseParameter(const IKernelContext& ctx, const EParameterType type, const CIdentifier& subTypeID = CIdentifier::undefined())
... |
f2649ad1cbafef7822d954d3fc6b2fe56e757b5c017eff04d57460ac1e6feaf6 | C/C++ | 2,355 | 57 | #pragma once
/**
* \brief Acquisition Server plugin adding the capability to receive stimulations from external sources
* via TCP/IP.
*
* The stimulation format is the same as with Shared Memory Tagging. It comprises three blocks of 8 bytes:
*
* ------------------------------------------------------------... |
caea9ec14ee4178c39d17ab0abd6bbe03eff1bc7731cf73113e6b47722740a91 | C/C++ | 2,358 | 84 | #pragma once
/**
* SPDX-FileCopyrightText: Inria <florent.leray@inria.fr>
* SPDX-License-Identifier: AGPL-3.0-only
*/
/**
* @file Thread.h
* @brief Implementation of a thread class with priority management.
*
* This class inherits from `std::thread` and provides functionalities to modify the thread priority,
*... |
c679108b769170f9a3315b94af466e164c0c4007c80778db04955978bd705857 | C/C++ | 2,370 | 91 | /*****************************************************************************
* SV_PairReader.h
* (c) 2012 - Ryan M. Layer
* Hall Laboratory
* Quinlan Laboratory
* Department of Computer Science
* Department of Biochemistry and Molecular Genetics
* Department of Public Health Sciences and Center for Public Heal... |
0f37f123e1ef5d7016b090ef0b733fa8080bb6f18926aabfb5211f9111d783a3 | C/C++ | 2,372 | 95 | /* -*- mode: C++; indent-tabs-mode: nil; -*-
*
* This file is a part of LEMON, a generic C++ optimization library.
*
* Copyright (C) 2003-2013
* Egervary Jeno Kombinatorikus Optimalizalasi Kutatocsoport
* (Egervary Research Group on Combinatorial Optimization, EGRES).
*
* Permission to use, modify and distribut... |
9fd36e51898d6545737875f03ab9017fe26aeef38a33ffc96b3cbcf544eb0428 | C/C++ | 2,373 | 68 | /*
* OpenBCI driver for OpenViBE
*
* \author Jeremy Frey
* \author Yann Renard
*/
#pragma once
#include "../ovasCConfigurationBuilder.h"
#include <gtk/gtk.h>
#include <map>
namespace OpenViBE {
namespace AcquisitionServer {
class CConfigurationOpenBCI final : public CConfigurationBuilder
{
public:
const st... |
17bf45c2099024f757bf3adce84914b67f5d8384a0cf988a1b41631d1f8920b7 | C/C++ | 2,380 | 77 | #pragma once
#ifdef TARGET_HAS_ThirdPartyOpenViBEPluginsGlobalDefines
#include "../../ovtk_base.h"
#include "ovtkTEncoder.h"
namespace OpenViBE {
namespace Toolkit {
template <class T>
class TStimulationEncoderLocal : public T
{
protected:
Kernel::TParameterHandler<CStimulationSet*> m_iStimulationSet;
usi... |
74c97cb6f6063330fac8805683c5658416509cfcee8bfb1a222ee215223e27f6 | C/C++ | 2,384 | 55 | #pragma once
#include "lepton/Lepton.h"
#include "../ovk_base.h"
#include <openvibe/kernel/ovITypeManager.h>
#include <algorithm>
#include <string>
#include <functional>
#include <cctype>
// because std::tolower has multiple signatures,
// it can not be easily used in std::transform
// this workaround is taken from ... |
9bbd2ca4a810a23c6e2388d465db10b5f50a5affbda4e3625a496c743fecc5d9 | C/C++ | 2,387 | 42 | #include <openvibe/ov_all.h>
#include <vector>
#include <tuple>
using namespace OpenViBE;
static const auto s_SimpleScenarioFileName = std::string("test-scenario-simple.mxs");
static const auto s_ClockStimulatorBoxId = CIdentifier(0x66b53b19, 0x043b1afe);
static const auto s_StimulationListenerBoxId = CIdentifier(0x4... |
4b05c014132247b594e2973bb0a2feced4ba0e7a46fe1d10e0f1154748564275 | C/C++ | 2,389 | 58 | // Copyright [1999-2017] EMBL-European Bioinformatics Institute
//
// Licensed under the Apache License, Version 2.0 (the "License");
// you may not use this file except in compliance with the License.
// You may obtain a copy of the License at
//
// http://www.apache.org/licenses/LICENSE-2.0
//
// Unless required b... |
54f3dee1f7a22872d79f9390122c4679f7c82ceec78b330ce07c8162e850f6de | C/C++ | 2,393 | 94 | #ifndef SNOWMAN_READSIM_H__
#define SNOWMAN_READSIM_H__
#include <string>
#include <vector>
#include <cassert>
#include "SeqLib/GenomicRegion.h"
struct Indel {
Indel() : len(0), type('N') {}
Indel(size_t l, char t, const std::string& rseq, const std::string& aseq, const std::string& lseq) : len(l), type(t) {... |
6462d681513c3894af66e24edc6e5a32ab32132e408f855bc0eef52c4c27e242 | C/C++ | 2,397 | 62 | #pragma once
#include "../ovp_defines.h"
#include <openvibe/ov_all.h>
#include <toolkit/ovtk_all.h>
namespace OpenViBE {
namespace Plugins {
namespace FileIO {
class CBoxAlgorithmElectrodeLocalisationFileReader final : public Toolkit::TBoxAlgorithm<IBoxAlgorithm>
{
public:
void release() override { delete this; }... |
6de3aca1834055c080df4b3d62293ac1141ad599c0951ea96a0f28ae641f866e | C/C++ | 2,410 | 63 | #pragma once
/**
* @file ProtocolMsgHandler.h
* @brief Header file for the ProtocolMsgHandler class.
* @details This file contains the declaration of the ProtocolMsgHandler class, which provides methods to send and receive protocol messages with a specific format.
* The protocol includes a header with a magic number a... |
90db24b1b94bbeb7b31a8506f1c306099dfe1ff14177fbe7b3f471acd3ee8e5e | C/C++ | 2,418 | 69 | /********************************************************************************
** Form generated from reading UI file 'QtGuiApplication4.ui'
**
** Created by: Qt User Interface Compiler version 5.8.0
**
** WARNING! All changes made in this file will be lost when recompiling UI file!
*********************************... |
e31b7a79ed6d85a5b60e4186ddcd478de8938b4deb61e4cafa970510ad804144 | C/C++ | 2,420 | 68 | #pragma once
#include "../../ovp_defines.h"
#include "ovpCEBMLBaseDecoder.h"
#include <stack>
namespace OpenViBE {
namespace Plugins {
namespace StreamCodecs {
class CStreamedMatrixDecoder : public CEBMLBaseDecoder
{
public:
CStreamedMatrixDecoder() { }
void release() override { delete this; }
bool initia... |
765fcfaa3981429fbb3aaa8bc9cc8b3c363f7282a76c09ffa6248fdb4c4d720e | C/C++ | 2,421 | 47 | #pragma once
#include "../ovkTKernelObject.h"
#include <vector>
#include <map>
#include <mutex>
namespace OpenViBE {
namespace Kernel {
class CPluginManager final : public TKernelObject<IPluginManager>
{
public:
explicit CPluginManager(const IKernelContext& ctx) : TKernelObject<IPluginManager>(ctx) {}
~CPlu... |
dd842c12460d4fce64181a57667dd3e70d1242f24ca0a83a5e93e7b94cef8dfa | C/C++ | 2,426 | 76 | #pragma once
#if defined TARGET_HAS_ThirdPartyUSBFirstAmpAPI
#include "../ovasCConfigurationBuilder.h"
#include "ovasIDriver.h"
#include "ovasCHeaderBrainProductsVAmp.h"
#include <gtk/gtk.h>
#include <windows.h>
#include <FirstAmp.h>
namespace OpenViBE {
namespace AcquisitionServer {
/**
* \class CConfigurationB... |
e434c0fadcc433205461850420a01e635f0011834a3de61f1352a87bdb573e30 | C/C++ | 2,427 | 58 | /*******************************************************************************
"A Collection of Useful C++ Classes for Digital Signal Processing"
By Vinnie Falco
Official project location:
https://github.com/vinniefalco/DSPFilters
See Documentation.cpp for contact information, notes, and bibliography.
----------... |
6e7f03ac2f05ba625221f4ecfc05911e3fb2f0f3f7cd92be048ea5e7b7f78772 | C/C++ | 2,428 | 96 |
/********************
PhyloBayes MPI. Copyright 2010-2013 Nicolas Lartillot, Nicolas Rodrigue, Daniel Stubbs, Jacques Richer.
PhyloBayes is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License
as published by the Free Software Foundation, either version 3 of the L... |
b88a7e868026ce204a3524bb83e4743293d491c35dcc70749cda2e9736018f6b | C/C++ | 2,430 | 81 | ///----------------------------------------------
// Copyright 2011 Wellcome Trust Sanger Institute
// Written by Jared Simpson (js18@sanger.ac.uk)
// Released under the GPL
//-----------------------------------------------
//
// VariationBuilderCommon - Data structures
// commons to various algorithms for assembling
/... |
3f62518d2d145e5aead6481519cd5a8152e9432327730ee3c6917c8a69c833a0 | C/C++ | 2,438 | 75 | #pragma once
#include "../ovkTKernelObject.h"
#include "ovkCScheduler.h"
#include "../ovkCKernelContext.h"
#include <system/ovCChrono.h>
#include <string>
namespace OpenViBE {
namespace Kernel {
class CScenarioSettingKeywordParserCallback;
class CPlayer final : public TKernelObject<IPlayer>
{
public:
explici... |
ed02c7dc31a860e36e760ef7430e3847648c13976f2bbc3c2956271faa39c22c | C/C++ | 2,440 | 69 | #pragma once
#include "../ovp_defines.h"
#include <openvibe/ov_all.h>
#include <toolkit/ovtk_all.h>
#include "ovpCInputChannel.h"
#include "ovpCOutputChannel.h"
#include <string>
namespace OpenViBE {
namespace Plugins {
namespace SignalProcessing {
class CBoxAlgorithmSynchro final : public Toolkit::TBoxAlgorithm<IB... |
dc69a1eb3662d963c09bafc4884344a9a54de09f9196a3153e1e38e1772f05ef | C/C++ | 2,447 | 95 | /*******************************************************************************
Copyright 2006-2012 Lukas Käll <lukas.kall@scilifelab.se>
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
http:... |
58785b38f97324d7c43172a12b7e52d1ad5504444b8e8d603892eba79004fc7b | C/C++ | 2,449 | 76 | #pragma once
#ifdef TARGET_HAS_ThirdPartyOpenViBEPluginsGlobalDefines
#include "../../ovtk_base.h"
#include "ovtkTDecoder.h"
namespace OpenViBE {
namespace Toolkit {
template <class T>
class TStimulationDecoderLocal : public T
{
protected:
Kernel::TParameterHandler<CStimulationSet*> m_oStimulationSet;
usi... |
71fc9438094dc6478a123a59d0294190484f3ac8fc7fddd201b65241b1c742e8 | C/C++ | 2,451 | 76 | #pragma once
#ifdef TARGET_HAS_ThirdPartyOpenViBEPluginsGlobalDefines
#include "../../ovtk_base.h"
#include "ovtkTDecoder.h"
namespace OpenViBE {
namespace Toolkit {
template <class T>
class TStreamedMatrixDecoderLocal : public T
{
protected:
Kernel::TParameterHandler<CMatrix*> m_oMatrix;
using T::m_codec... |
8acd6223e0f6420d80acc3505aeab7a08182a46b00c1c74c42cbbb13c0e08c96 | C/C++ | 2,452 | 88 | #pragma once
#if defined TARGET_HAS_ThirdPartyGUSBampCAPI
#include "ovasIDriver.h"
#include "../ovasCHeader.h"
#include "../ovasCSettingsHelper.h"
#include "../ovasCSettingsHelperOperators.h"
#include <gtk/gtk.h>
#include <vector>
namespace OpenViBE {
namespace AcquisitionServer {
/**
* \class CDriverGTecGUSBampL... |
93aad31fab1d58e3fe239b383cd67f404dbf8a1bd46ebf4696b142eed1b1f6fb | C/C++ | 2,454 | 66 | #pragma once
#include "../ovIConfigurable.h"
namespace OpenViBE {
namespace Kernel {
/**
* \class IAlgorithmProto
* \brief Prototype interface for algorithm
* \author Yann Renard (INRIA/IRISA)
* \date 2007-11-21
* \ingroup Group_Algorithm
* \ingroup Group_Kernel
* \ingroup Group_Extend
* \sa Plugins::IAlgorit... |
b89f4d59679d3b66f09d66cdaf319fbc6d1a8b63eec6e774ce0471a0b1036531 | C/C++ | 2,468 | 79 | /*****************************************************************************
* SV_EvidenceReader.h
* (c) 2012 - Ryan M. Layer
* Hall Laboratory
* Quinlan Laboratory
* Department of Computer Science
* Department of Biochemistry and Molecular Genetics
* Department of Public Health Sciences and Center for Public ... |
bcb251c38b68bd4ae6b8c5f86e207f17dcd123911d2c2672510b0d63c3d90218 | C/C++ | 2,485 | 90 | #pragma once
#if defined TARGET_HAS_ThirdPartyBrainProductsAmplifierSDK
#include <openvibe/ov_all.h>
#include "../ovasCSettingsHelper.h"
#include "../ovasCSettingsHelperOperators.h"
#include "../brainproducts-base/CDriverBrainProductsBase.h"
#include <deque>
#ifndef BYTE
typedef unsigned char BYTE;
#endif
namespa... |
b70617d7a7e404eb3875ed82648a03cb8eccba0d8169def6b99a6a30e1e67f3f | C/C++ | 2,487 | 74 | // SPDX-FileCopyrightText: Inria <thomas.prampart@inria.fr>
// SPDX-License-Identifier: AGPL-3.0-only
#pragma once
#include <AbstractDriver.h>
#include <AbstractDriverBuilder.h>
#include <openvibe/parameters/parameterListString.h>
#include <openvibe/parameters/parameterInt.h>
#include <lsl_cpp.h>
#include <vector>... |
ddb30556562bcb758a2077920c51aaaf90ec17b5e4fe0ad61b65d614eacd6e6c | C/C++ | 2,487 | 78 |
/********************
PhyloBayes MPI. Copyright 2010-2013 Nicolas Lartillot, Nicolas Rodrigue, Daniel Stubbs, Jacques Richer.
PhyloBayes is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License
as published by the Free Software Foundation, either version 3 of the L... |
1deaec6a0c94808e73101219c32f7dc643613e959f918f09f7a73551652fac9a | C/C++ | 2,492 | 62 | // dear imgui test engine
// (result exporters)
// Read https://github.com/ocornut/imgui_test_engine/wiki/Exporting-Results
// This file is governed by the "Dear ImGui Test Engine License".
// Details of the license are provided in the LICENSE.txt file in the same directory.
#pragma once
//--------------------------... |
d07982a177a12586fb913ce47d240b4dc4ad0ed4241f49f3afe2e5cdbea4d936 | C/C++ | 2,493 | 63 | // This file is part of Eigen, a lightweight C++ template library
// for linear algebra.
//
// Copyright (C) 2008-2009 Gael Guennebaud <gael.guennebaud@inria.fr>
//
// This Source Code Form is subject to the terms of the Mozilla
// Public License v. 2.0. If a copy of the MPL was not distributed
// with this file, You c... |
6c17678839929c7c26d5198cefaea6cec09b8d8a6c9eee01864958f4aa12f2b7 | C/C++ | 2,495 | 66 | /*****************************************************************************
VecOps.h
(c) 2009 - Aaron Quinlan
Hall Laboratory
Department of Biochemistry and Molecular Genetics
University of Virginia
aaronquinlan@gmail.com
Licensed under the GNU General Public License 2.0 license.
********************... |
311d05fd4f1dbada9327ecfed5b2e6ad90d3519715856ce6743e92268b6fc937 | C/C++ | 2,501 | 74 | /*******************************************************************************
Copyright 2006-2012 Lukas Käll <lukas.kall@scilifelab.se>
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
http:... |
359c24fce011bf9e8c1082a728d0594e6ff3a64383e1ab6df8d0062bafa3c744 | C/C++ | 2,502 | 90 | #pragma once
#if defined(TARGET_HAS_ThirdPartyMicromed)
#include "ovasIDriver.h"
#include "../ovasCHeader.h"
#include "../ovasCSettingsHelper.h"
#include "../ovasCSettingsHelperOperators.h"
#if defined TARGET_OS_Windows
#include <openvibe/ov_all.h>
#include <iostream>
#include <socket/IConnectionServer.h>
#include ... |
74bd73fbd648c8f94402b0f401d3b87f5bc67f9e3f7c54d16c60b7d8bd6ac7e0 | C/C++ | 2,511 | 72 | ///-------------------------------------------------------------------------------------------------
///
/// \file ovtTestFixture.h
/// \author Charles Garraud / Inria.
/// \date 08/02/2016.
/// \copyright Copyright (C) 2022 Inria
///
/// This program is free software: you can redistribute it and/or modify
/// it unde... |
9bc413e4a3d6358f73d6f2d7531f7877214e04e2b461842287f57d58241311cb | C/C++ | 2,515 | 87 | //
// OpenViBE Tracker
//
#pragma once
#include <openvibe/ov_all.h>
#include <toolkit/ovtk_all.h>
#include <iostream>
#include "Workspace.h"
#include "BoxPlugins.h"
#include "TrackerPlugins.h"
#include "Contexted.h"
#include "ParallelExecutor.h"
/**
* \namespace OpenViBE::Tracker
* \author J.T. Lindgren (Inria)
... |
16d43d48719e698402072687b83d6c2cdf72ab484f49699691bc08b5877d8a39 | C/C++ | 2,524 | 85 | // SPDX-FileCopyrightText: Inria <tristan.cabel@inria.fr>
// SPDX-License-Identifier: AGPL-3.0-only
#pragma once
#include <QtCore>
#include <string>
#include <vector>
#include <parametersObject.h>
#include <QQmlEngine>
#include <QQuickItem>
#include "CGrazMultiVisualization.h"
namespace OpenViBE {
namespace Plugin... |
ebd5f1e3fe97becd491b4fa274f60884bdbaf8a504d8d06376c1de25c3b34a89 | C/C++ | 2,529 | 65 | #pragma once
#include "../ovp_defines.h"
#include <toolkit/ovtk_all.h>
#include <array>
namespace OpenViBE {
namespace Plugins {
namespace StreamCodecs {
class CDecoderAlgorithmTest final : public Toolkit::TBoxAlgorithm<IBoxAlgorithm>
{
public:
CDecoderAlgorithmTest() { }
~CDecoderAlgorithmTest() override { }... |
2000f2b500d63fa77bc1809930ffcb830febb23b9218a73cad2947b80dc54860 | C/C++ | 2,530 | 85 | #pragma once
#ifdef TARGET_HAS_ThirdPartyOpenViBEPluginsGlobalDefines
#include "../../ovtk_base.h"
#include "../ovtkTCodec.h"
namespace OpenViBE {
namespace Toolkit {
template <class T>
class TEncoderLocal : public T
{
protected:
Kernel::TParameterHandler<CMemoryBuffer*> m_buffer;
using T::initialize;
... |
630757fa0b0f707005cefd1f351538af93502c7926ff29f3c0a1e2df9dc5febb | C/C++ | 2,531 | 89 | #pragma once
#if defined TARGET_HAS_ThirdPartyUSBFirstAmpAPI
#include "ovasIDriver.h"
#include "ovasCHeaderBrainProductsVAmp.h"
#include <openvibe/ov_all.h>
#include "../ovasCSettingsHelper.h"
#include "../ovasCSettingsHelperOperators.h"
#include <vector>
#include <deque>
namespace OpenViBE {
namespace Acquisition... |
d271a900a28d93fbf945f96d9f21b373578f6e6ca637d9eb2e7ef7563f4d4a06 | C/C++ | 2,533 | 85 | #pragma once
#include <unordered_map>
#include <string>
#include <set>
#include "SeqLib/BamRecord.h"
#include "BreakPoint.h"
using SeqLib::BamRecordPtr;
using SeqLib::Cigar;
using SeqLib::CigarMap;
using SeqLib::GenomicRegion;
using SeqLib::BamHeader;
// forward declare
class AlignedContig;
/*! This class conta... |
93a38726d37d8d2cc071013b7516f93cc4aeb6afc59d8925349ea6e7e5bfc9b5 | C/C++ | 2,540 | 95 | /*
# =============================================================================
# Copyright (c) 2016 - 2021 Blue Brain Project/EPFL
#
# See top-level LICENSE file for details.
# =============================================================================.
*/
#pragma once
#include <cassert>
#include <string>
#incl... |
c50495494649c681a8f90d8813a4cb41de15a87c06e5c6db1d92ae876070703e | C/C++ | 2,566 | 69 | #pragma once
#include "../../ovp_defines.h"
#include "ovpCStreamedMatrixDecoder.h"
#include <iomanip>
namespace OpenViBE {
namespace Plugins {
namespace StreamCodecs {
class CSpectrumDecoder final : public CStreamedMatrixDecoder
{
public:
void release() override { delete this; }
bool initialize() override;
... |
8cd0ced379c77992d31c08670e9778f6ca8eff985817c1d09da0abf3e1247ff8 | C/C++ | 2,573 | 74 | //-----------------------------------------------
// Copyright 2011 Wellcome Trust Sanger Institute
// Written by Jared Simpson (js18@sanger.ac.uk)
// Released under the GPL
//-----------------------------------------------
//
// SampledSuffixArray - Data structure holding
// a subset of suffix array positions. From th... |
f78f5344fcdacf25ed7095984fa182c2a326373d25591484b128acb022434c1f | C/C++ | 2,577 | 89 | /*****************************************************************************
chromsweepBed.h
(c) 2009 - Aaron Quinlan
Hall Laboratory
Department of Biochemistry and Molecular Genetics
University of Virginia
aaronquinlan@gmail.com
Licenced under the GNU General Public License 2.0 license.
*************... |
3bab7c05a0854ec4b29292bc4fc1597e936a23cbc8c7e133503e33965a2ff1bd | C/C++ | 2,578 | 79 | #pragma once
#ifdef TARGET_HAS_ThirdPartyOpenViBEPluginsGlobalDefines
#include "ovtkTStreamedMatrixEncoder.h"
namespace OpenViBE {
namespace Toolkit {
template <class T>
class TChannelUnitsEncoderLocal : public T
{
protected:
Kernel::TParameterHandler<bool> m_iDynamic;
using T::m_codec;
using T::m_boxA... |
c1aa4a47b0da321614bb98760c615d0f9eeb03967e0f2b45fb77a13e3d633cfa | C/C++ | 2,578 | 87 | #ifndef LEPTON_MSVC_ERFC_H_
#define LEPTON_MSVC_ERFC_H_
/*
* Up to version 11 (VC++ 2012), Microsoft does not support the
* standard C99 erf() and erfc() functions so we have to fake them here.
* These were added in version 12 (VC++ 2013), which sets _MSC_VER=1800
* (VC11 has _MSC_VER=1700).
*/
#if defined(_MSC... |
6d9967ac63231820459744b1a1e83f56ecb9bb1ae6303f0ce4f78496bdc1ce07 | C/C++ | 2,582 | 96 | /*******************************************************************************
Copyright 2006-2012 Lukas Käll <lukas.kall@scilifelab.se>
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
http:... |
ed23ec1b0ede5f749184dbaa98774661e44437d19fde41f8ef88a908a16a1a7a | C/C++ | 2,583 | 89 |
/********************
PhyloBayes MPI. Copyright 2010-2013 Nicolas Lartillot, Nicolas Rodrigue, Daniel Stubbs, Jacques Richer.
PhyloBayes is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License
as published by the Free Software Foundation, either version 3 of the L... |
dce9fb7dbc4820519a8f675364dabe1ee7bd54ee50def367e6ed159575b32db7 | C/C++ | 2,584 | 45 | #pragma once
#include "../ovtkTAlgorithm.h"
#include "../../ovtkIFeatureVectorSet.h"
#define OVTK_ClassId_Algorithm_ClassifierTrainer OpenViBE::CIdentifier(0x5ABC21E6, 0x3C3D349B)
#define OVTK_ClassId_Algorithm_ClassifierTrainerDesc OpenViBE::CIdentifier(0x56DD6401, 0... |
0943ea687384d832aa07b850e2a8de8162ed9d6bcdd20aba7349db86c223bd9d | C/C++ | 2,589 | 82 | #ifndef __UTIL_H__
#define __UTIL_H__
#include <stdio.h>
#include <zlib.h>
#ifndef NAN
#define NAN (0.0/0.0)
#endif
#ifndef FALSE
#define FALSE 0
#endif
#ifndef TRUE
#define TRUE 1
#endif
#define UTIL_FGETS_BUF_SZ 16348
#define UTIL_STR_BUF_SZ 20
#define util_fread_one(file, var) util_must_fread((file), &(var)... |
71665766d432d8b0a1dc8c2ae561e6f6b94381e065044bd6ce161b04e5cb1088 | C/C++ | 2,599 | 70 | ///----------------------------------------------
// Copyright 2011 Wellcome Trust Sanger Institute
// Written by Jared Simpson (js18@sanger.ac.uk)
// Released under the GPL
//-----------------------------------------------
//
// Profiler.h -- Lightweight macro-based function profiler.
//
#ifndef PROFILER_H
#define PRO... |
0091aea3393b27d86527eb9f3d8e164166fc76cd1e37d62463d9a4bd8b65c690 | C/C++ | 2,600 | 95 | /*****************************************************************************
* SV_SplitReadReader.h
* (c) 2012 - Ryan M. Layer
* Hall Laboratory
* Quinlan Laboratory
* Department of Computer Science
* Department of Biochemistry and Molecular Genetics
* Department of Public Health Sciences and Center for Public... |
0867f17f03b0f1175247289c3b8bcf8a4c87b9a35ba545e620f108b41442c412 | C/C++ | 2,602 | 71 | #pragma once
#include "../ovkTKernelObject.h"
#include <sstream>
#include <iostream>
#include <map>
#include <fstream>
namespace OpenViBE {
namespace Kernel {
class CLogListenerFile final : public TKernelObject<ILogListener>
{
public:
CLogListenerFile(const IKernelContext& ctx, const CString& applicationName, ... |
5d150f1fd149e17288dcbb9376678bd2f0578cfbd82d779f91382b1cd729dd4d | C/C++ | 2,602 | 79 | #pragma once
#ifdef TARGET_HAS_ThirdPartyOpenViBEPluginsGlobalDefines
#include "../../ovtk_base.h"
#include "ovtkTStreamedMatrixDecoder.h"
namespace OpenViBE {
namespace Toolkit {
template <class T>
class TSignalDecoderLocal : public T
{
protected:
Kernel::TParameterHandler<uint64_t> m_sampling;
using T::... |
c366da26f23c2437169bf41f7942d6cd5b07ab173a30356e998e4b4fd204ac27 | C/C++ | 2,602 | 83 | #pragma once
// SPDX - License - Identifier: AGPL - 3.0 - only
// SPDX-FileCopyrightText: Inria <florent.leray@inria.fr>
#include <string>
#include <nlohmann/json.hpp>
/**
* @brief Interface for settings management.
*
* Defines the contract for loading and saving application settings
* regardless of the underly... |
5ee44f4ea443021aee2cade031db32a1fb296a60ca314977c6c6eda868ac90fa | C/C++ | 2,608 | 96 |
/********************
PhyloBayes MPI. Copyright 2010-2013 Nicolas Lartillot, Nicolas Rodrigue, Daniel Stubbs, Jacques Richer.
PhyloBayes is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License
as published by the Free Software Foundation, either version 3 of the L... |
84119e8b74124d308cd5a447e33eeb040ff67f232b9d0a48cc53819e65cb4b55 | C/C++ | 2,610 | 58 | #pragma once
/**
* @file ovMsg.h
* @author Florent LERAY florent.leray@inria.fr
* @date 2025
* @version 1.0
* @copyright Copyright (c) 2025 INRIA. All rights reserved.
* @license This project is released under LGPLv3 license.
*
* @brief Header file defining the ovMsg structure for messages sent to OPENVIBE and from an... |
92d1f7a33c2207766632e7fff13cf3bb20c77ed84114e46155179f105721742a | C/C++ | 2,622 | 82 |
/********************
PhyloBayes MPI. Copyright 2010-2013 Nicolas Lartillot, Nicolas Rodrigue, Daniel Stubbs, Jacques Richer.
PhyloBayes is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License
as published by the Free Software Foundation, either version 3 of the L... |
21cf5ca6759de7f4348a7b012049fe36567fd50688fb65ba689e28a80a547a83 | C/C++ | 2,624 | 66 | #ifndef WPDAS_H
#define WPDAS_H
/******************************************************************************
* Custom Data Structures *
******************************************************************************/
/* Comparator passed to c++ sort function in ... |
4ebc97d990961187bb6f2bc053de36834b0596c07fee3c69b111588438e2fb82 | C/C++ | 2,629 | 69 | // @copyright notice: Possibly due to dependencies, this box used to be GPL before upgrade to AGPL3
#pragma once
#include "../ovp_defines.h"
#include <openvibe/ov_all.h>
#include <toolkit/ovtk_all.h>
namespace OpenViBE {
namespace Plugins {
namespace SignalProcessing {
class CDetectingMinMaxBoxAlgorithm final : virt... |
f71e418a78f9b2232eadff1fec0b64db637b6e66995594a6a861ea6448097247 | C/C++ | 2,649 | 78 | #pragma once
#ifdef TARGET_HAS_ThirdPartyOpenViBEPluginsGlobalDefines
#include "ovtkTStreamedMatrixDecoder.h"
namespace OpenViBE {
namespace Toolkit {
template <class T>
class TChannelUnitsDecoderLocal : public T
{
protected:
Kernel::TParameterHandler<bool> m_oDynamic;
using T::m_codec;
using T::m_boxA... |
a36539b148abad370be1aa46b08dee87edc454a784f5c045648c5a1115435cda | C/C++ | 2,657 | 91 | ///-----------------------------------------------
// Copyright 2010 Wellcome Trust Sanger Institute
// Written by Jared Simpson (js18@sanger.ac.uk)
// Released under the GPL
//-----------------------------------------------
//
// FMMergeProcess - Merge unambiguously overlapping sequences
//
#ifndef FMMERGEPROCESS_H
#d... |
c6a93041b61ed6f3a8a90088fecadd7ded93de855d007e88e54e3421954ad395 | C/C++ | 2,657 | 43 | #ifndef LEPTON_H_
#define LEPTON_H_
/* -------------------------------------------------------------------------- *
* Lepton *
* -------------------------------------------------------------------------- *
* This is part of the Lepton expression pa... |
85b5a166b4b3cf1142ebe48e9c87c17f3e003062c06f6f3ade90be7d50d3f47f | C/C++ | 2,659 | 86 |
/********************
PhyloBayes MPI. Copyright 2010-2013 Nicolas Lartillot, Nicolas Rodrigue, Daniel Stubbs, Jacques Richer.
PhyloBayes is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License
as published by the Free Software Foundation, either version 3 of the L... |
2e1356d9b509aecdea28ae4cf4880e8fe358d5e195c5ccd9cff763762c26dabd | C/C++ | 2,661 | 68 | #pragma once
#include "../../ovp_defines.h"
#include <openvibe/ov_all.h>
#include <toolkit/ovtk_all.h>
namespace OpenViBE {
namespace Plugins {
namespace FileIO {
class CBoxAlgorithmBrainampFileReader final : public Toolkit::TBoxAlgorithm<IBoxAlgorithm>
{
public:
void release() override { delete this; }
uint... |
05c5a8b68201e15c6f5521ef762874f5ea7ae52451d524dfc6898f80cf1c37c0 | C/C++ | 2,662 | 88 | #ifndef SMARTINGAMP_H
#define SMARTINGAMP_H
#ifndef _WIN32_WINNT // Minimum platform is Windows 7
#define _WIN32_WINNT 0x0601
#endif
#include <stdexcept>
#include <queue>
#include <string>
#include <boost/asio.hpp>
#include <boost/asio/serial_port.hpp>
#include <boost/system/error_code.hpp>
#include <boos... |
aa6cf641fc628064482b7154f13869e3aecd84b96d19a48a8503db99224747cb | C/C++ | 2,668 | 77 | /* -*- mode: C++; indent-tabs-mode: nil; -*-
*
* This file is a part of LEMON, a generic C++ optimization library.
*
* Copyright (C) 2003-2013
* Egervary Jeno Kombinatorikus Optimalizalasi Kutatocsoport
* (Egervary Research Group on Combinatorial Optimization, EGRES).
*
* Permission to use, modify and distribut... |
54fa0bf701923328cadd38bf8a1f3046fa57f965c54945ea039fc71e68552718 | C/C++ | 2,672 | 79 | // ***************************************************************************
// FastaIndex.h (c) 2010 Erik Garrison <erik.garrison@bc.edu>
// Marth Lab, Department of Biology, Boston College
// All rights reserved.
// ---------------------------------------------------------------------------
// Last modified: 5 Febr... |
137e373926c718f5c7816a0c15ba1942b6fe3cfef3018b986278b2ca9a5ed8fb | C/C++ | 2,680 | 102 | //-----------------------------------------------
// Copyright 2009 Wellcome Trust Sanger Institute
// Written by Jared Simpson (js18@sanger.ac.uk)
// Released under the GPL license
//-----------------------------------------------
//
// DNAString - Wrapper for c-string for DNA sequences
// It is tailored for fast suff... |
28e015e3e6e9433a801a67547f2f6e62fbf2fe8eb93c43d3b6c6671d92e22fbe | C/C++ | 2,682 | 78 | #pragma once
#ifdef TARGET_HAS_ThirdPartyOpenViBEPluginsGlobalDefines
#include "ovtkTStreamedMatrixEncoder.h"
namespace OpenViBE {
namespace Toolkit {
template <class T>
class TChannelLocalisationEncoderLocal : public T
{
protected:
Kernel::TParameterHandler<bool> m_iDynamic;
using T::m_codec;
using T:... |
2e9ef134defe0a8af017ed1f7814a31c1dbd4b6ddbd1dbfea9ea485d4cd5b222 | C/C++ | 2,682 | 62 | #pragma once
#include "defines.h"
#include <cstdio>
#include <fstream>
namespace FS {
class FS_API Files
{
public:
static FILE* open(const char* file, const char* mode);
static FILE* popen(const char* file, const char* mode);
static void openOFStream(std::ofstream& stream, const char* file, std::ios_base:... |
de905f4ee21be8cf26c3505ea521e131fff86e7048e85600e5861b42ddbdc663 | C/C++ | 2,682 | 88 | /*
# =============================================================================
# Copyright (c) 2016 - 2021 Blue Brain Project/EPFL
#
# See top-level LICENSE file for details.
# =============================================================================.
*/
#pragma once
#include "coreneuron/network/netcon.hpp"
#... |
1d1bca74f75f96a889abd08a2ed647c2fbd0bea15e23f41e2ebe47f1157a4506 | C/C++ | 2,684 | 69 | #pragma once
#include "../ovp_defines.h"
#include <toolkit/ovtk_all.h>
#include <array>
namespace OpenViBE {
namespace Plugins {
namespace StreamCodecs {
class CEncoderAlgorithmTest : public Toolkit::TBoxAlgorithm<IBoxAlgorithm>
{
public:
void release() override { delete this; }
uint64_t getClockFrequency() o... |
de27f3c074560971a3051b603b2c561e7b7e29b615d9a16616e3430a5e8e24f6 | C/C++ | 2,696 | 98 | // SPDX-FileCopyrightText: Inria <thomas.prampart@inria.fr>
// SPDX-License-Identifier: AGPL-3.0-only
#pragma once
#include <QtCore>
#include <QQmlListProperty>
#include <QColor>
#include <QtQmlIntegration/qqmlintegration.h>
#include <QQuickItem>
#include <QQmlEngine>
#include "openvibe/ov_all.h"
namespace OpenViBE... |
e3dca1e0f4b397ff9c3838bfb9ced42203924a942e420ee1d6bfb37c39a3c32d | C/C++ | 2,696 | 79 | #pragma once
#if defined TARGET_HAS_ThirdPartyLSL
#include "../ovp_defines.h"
#include <openvibe/ov_all.h>
#include <toolkit/ovtk_all.h>
#include <vector>
#include "../ovpCInputChannel.h"
#include <lsl_cpp.h>
namespace OpenViBE {
namespace Plugins {
namespace NetworkIO {
class CBoxAlgorithmLSLExportGipsa final : pu... |
142b38634e6f19e5fe27ea3bdeff19a5b010b12d7bf5ed9058c7a71922328681 | C/C++ | 2,701 | 80 | #pragma once
#ifdef TARGET_HAS_ThirdPartyOpenViBEPluginsGlobalDefines
#include "../../ovtk_base.h"
#include "../ovtkTCodec.h"
namespace OpenViBE {
namespace Toolkit {
template <class T>
class TDecoderLocal : public T
{
protected:
Kernel::TParameterHandler<const CMemoryBuffer*> m_iBuffer;
using T::m_codec... |
9a095f0abccaac0031a9eb8e87e30797b5a7eaf542860dedeaa92ef65b674abf | C/C++ | 2,706 | 71 | ///-------------------------------------------------------------------------------------------------
///
/// \file ovasCConfigurationBrainProductsBrainampSeries.h
/// \brief Brain Products Brainamp Series driver for OpenViBE
/// \author Yann Renard
/// \copyright Copyright (C) 2022 Inria
///
/// This program is free so... |
fd8c8861473cee59d451c7c1d9938d51ffecbf7d7a81f2fe5fca30194d8d0905 | C/C++ | 2,709 | 79 | #pragma once
#include "../ovIKernelObject.h"
namespace OpenViBE {
namespace Plugins {
class IAlgorithmDesc;
} // namespace Plugins
namespace Kernel {
class IAlgorithmProxy;
/**
* \class IAlgorithmManager
* \author Yann Renard (INRIA/IRISA)
* \date 2007-11-06
* \brief Manager for all kind of plugin algorithms
... |
a7f4efc850f67c70843bfca6645d2c7e76431954c3b488157ad1fadecdcec298 | C/C++ | 2,711 | 71 | ///-------------------------------------------------------------------------------------------------
///
/// \file ovasCConfigurationBrainProductsBrainampSeries.h
/// \brief Brain Products Brainamp Series driver for OpenViBE
/// \author Yann Renard
/// \copyright Copyright (C) 2022 Inria
///
/// This program is free s... |
fecf082c2d6126d959e0df89d7b1a4b496c8dc04cd7cac4a50ebd52cedffa717 | C/C++ | 2,712 | 63 |
/********************
PhyloBayes MPI. Copyright 2010-2013 Nicolas Lartillot, Nicolas Rodrigue, Daniel Stubbs, Jacques Richer.
PhyloBayes is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License
as published by the Free Software Foundation, either version 3 of the L... |
6072e7d2a2d9eee6dfac9410f22da9c17167a27bf37de6628a22c4d538a57295 | C/C++ | 2,715 | 79 | //-----------------------------------------------
// Copyright 2009 Wellcome Trust Sanger Institute
// Written by Jared Simpson (js18@sanger.ac.uk)
// Released under the GPL license
//-----------------------------------------------
//
// SuffixArray - Generalized suffix array
//
#ifndef SUFFIXARRAY_H
#define SUFFIXARRA... |
ee735e081900deece62aab78ee1f001a41ab1c0c48a8ab585032c295eb7ebfd4 | C/C++ | 2,716 | 52 | #pragma once
#include "defines.h"
#include <cstdlib> // fix Unix compatibility
namespace System {
class System_API Memory
{
public:
static bool hostToLittleEndian(uint16_t value, uint8_t* buffer);
static bool hostToLittleEndian(uint32_t value, uint8_t* buffer);
static bool hostToLittleEndian(uint64_t va... |
18926eb5f32d8f89703b7db78f47c4ab0c1046428f76503709ec8f0c3957be58 | C/C++ | 2,717 | 93 | //-----------------------------------------------
// Copyright 2010 Wellcome Trust Sanger Institute
// Written by Jared Simpson (js18@sanger.ac.uk)
// Released under the GPL
//-----------------------------------------------
//
// SearchSeed.h - Data structure holding a partial
// alignment to a FM-index.
//
#ifndef S... |
0704ba8dd7e8b51a5bd24f8315d8481351a81322fb9b3b2a66a298f632a11384 | C/C++ | 2,725 | 86 | #pragma once
#ifdef TARGET_HAS_ThirdPartyOpenViBEPluginsGlobalDefines
#include "../../ovtk_base.h"
#include "ovtkTEncoder.h"
namespace OpenViBE {
namespace Toolkit {
template <class T>
class TStreamedMatrixEncoderLocal : public T
{
protected:
//specific attribute : a matrix handler
Kernel::TParameterHandler... |
55a89736fc08bb6ca315bb8a3011e86b7541e02ac5f44244d4025a9eaaccee60 | C/C++ | 2,727 | 90 | #pragma once
#include "IConnection.h"
#include <array>
#include <cstdio>
namespace Socket {
class Socket_API IConnectionBluetooth : public IConnection
{
public:
/**
* \brief Connect to the bluetooth device.
* \param[in] address the MAC address of the Bluetooth device.
* \return If the function su... |
ef0d3ca3bc886719fbc466cf17dfe25d41dcb01b6d9f5deb72572457b78b6715 | C/C++ | 2,727 | 60 | #pragma once
#include "../ovtkTAlgorithm.h"
#include "../../ovtkIVector.h"
#include "../../ovtkIFeatureVector.h"
#include "../../ovtkIFeatureVectorSet.h"
#include "ovtkCAlgorithmClassifier.h"
#define OVTK_ClassId_Algorithm_PairingStrategy OpenViBE::CIdentifier(0xFD3CB444, 0x58F007... |
2e875d512a05139088520b6bd2629970278e27dd7ce5091e5f3e938133b9e8c2 | C/C++ | 2,735 | 99 | // SPDX-FileCopyrightText: Inria <tristan.cabel@inria.fr>
// SPDX-License-Identifier: AGPL-3.0-only
#pragma once
#include <openvibe/ov_all.h>
#include <QtCore>
#include <QColor>
#include <QQmlEngine>
#include <QtQml>
#include <QJSValue>
#include <QQuickItem>
namespace OpenViBE {
namespace Plugins {
namespace SimpleV... |
3bb353938737a8a08d51b45f421fb89ce61a9954f181b7aae0bd806a24788790 | C/C++ | 2,735 | 66 | #pragma once
#include "ovas_base.h"
#include "../ovasCSettingsHelper.h"
#include "boost/variant.hpp"
#include <deque>
/**
* \brief Interface for acquisition server plugins
*
* Contains an interface to the acquisition server plugins. Any plugin must inherit from this class in order to be able to register with ... |
01c2dad9ea31c6849370e22e97342a675da4a53067ba0baaf3f1cc6ca1660a9e | C/C++ | 2,747 | 68 | // This file is part of Eigen, a lightweight C++ template library
// for linear algebra.
//
// Copyright (C) 2010 Vincent Lejeune
// Copyright (C) 2010 Gael Guennebaud <gael.guennebaud@inria.fr>
//
// This Source Code Form is subject to the terms of the Mozilla
// Public License v. 2.0. If a copy of the MPL was not dis... |
c05b0743e27e387c24d9f023d6e078fae19e8b760a6afa25cbf118640b75d06a | C/C++ | 2,752 | 105 |
/********************
PhyloBayes MPI. Copyright 2010-2013 Nicolas Lartillot, Nicolas Rodrigue, Daniel Stubbs, Jacques Richer.
PhyloBayes is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License
as published by the Free Software Foundation, either version 3 of the L... |
8b989880339463ee8a05d297f19b21eacd4725b5d161589fc3818161de14abba | C/C++ | 2,753 | 77 | #pragma once
#ifdef TARGET_HAS_ThirdPartyOpenViBEPluginsGlobalDefines
#include "ovtkTStreamedMatrixDecoder.h"
namespace OpenViBE {
namespace Toolkit {
template <class T>
class TChannelLocalisationDecoderLocal : public T
{
protected:
Kernel::TParameterHandler<bool> m_oDynamic;
using T::m_codec;
using T:... |
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