sha256 stringlengths 64 64 | language stringclasses 28
values | size int32 1 491k | lines int32 1 23.2k | content stringlengths 1 200k |
|---|---|---|---|---|
d3de2176d6fcccc07471a48bae4080b7cfb71875ffbd7a343e2ab140d48c4762 | MATLAB | 424 | 17 | function [tree] = zef_dataBank_loadTreeNodes(tree)
%changes the data in the tree nodes from matFileObject to struct by loading
%the files
dbFieldNames=fieldnames(tree);
folder=extractBefore(tree.(dbFieldNames{1}).data.Properties.Source, 'node_');
for i=1:length(dbFieldNames)
tree.(dbFieldNames{i}).data=load(tre... |
7e35f6f76336746d2ffde8fbfca1c0d97ddad9a4aa41cf510b87cf963b8c4044 | MATLAB | 425 | 19 | function mag = mag_fn(La, Lfem)
% Documentation
%
% Calculates the MAG difference measure for a given analytical lead field
% La and a numerically produced Lfem.
%
% Inputs:
%
% - La: the analytical lead field (or other matrix)
%
% - Lfem: the numerical matrix we are comparing to La.
%
% Output
%
% - rdm: the N × 1 MA... |
feb4dcb1f089b5b3d14705d625a8887f222e43fd0886308ce5874342e420e7e7 | MATLAB | 425 | 16 | % OV_MATLAB toolkit
% OV_setStimulationOutputHeader.m
% -------------------------------
% Author : Laurent Bonnet (INRIA)
% Date : 28/07/2011
% Set the header information on a Stimulation input.
function box_out = OV_setStimulationOutputHeader(box_in, output_index)
box_in.outputs{output_index}.header.type ... |
18d0af76062f5f68026cb946362cdf339744f17308d9ecbfafdd8beda38a177d | MATLAB | 426 | 14 | function colormap_vec = zef_colormap(inv_colormap)
if isequal(evalin('caller','exist(''zef'')'),1)
zef = evalin('caller','zef');
else
zef = evalin('base','zef');
end
colortune_param = eval('zef.colortune_param');
colormap_size = eval('zef.colormap_size');
colormap_cell = eval('zef.colormap_cell');
colormap_ve... |
4cea34ca2c7e9e50c82ef3cf5852682404e9712b7ea7ce911cf3f694836914e9 | MATLAB | 426 | 12 |
% --- Simulate (delay-free, looped passes) ---
zef.source_tree_simulated = zef_simulate_jr_tree( ...
zef.source_tree, ...
zef.source_tree_signal_parameters );
% --- Publish with delays (pure time translation only) ---
zef.source_tree_published = zef_publish_jr_tree_delays( ...
... |
559c7fa62b4833b0b008f2cc9ac4db0f4b6a68e6986e2c0ec85f905a91275240 | MATLAB | 426 | 16 | % OV_MATLAB toolkit
% OV_setChannelLocalizationInputHeader.m
% -------------------------------
% Author : Laurent Bonnet (INRIA)
% Date : 28/07/2011
% Set the header information on a Stimulation input.
function box_out = OV_setStimulationInputHeader(box_in, input_index)
box_in.inputs{input_index}.header.ty... |
5a637c807e9174639dc980c2afe0cbac68d3f22481a397666b1c1e995d41680e | MATLAB | 426 | 16 | % OV_MATLAB toolkit
% OV_setStimulationOutputHeader.m
% -------------------------------
% Author : Laurent Bonnet (INRIA)
% Date : 28/07/2011
% Set the header information on a Stimulation input.
function box_out = OV_setStimulationsOutputHeader(box_in, output_index)
box_in.outputs{output_index}.header.type... |
d3138db432e3c64b71cb42f336cbceb65f272139e380fae83d62f7af5ea0d166 | MATLAB | 427 | 15 | function boolEsc = CheckEsc()
%CheckEsc Checks if escape button is pressed
% boolEsc=any(strcmpi(KbName(keyCode),'escape'));
%check if psychtoolbox is installed
if exist('KbName','file')
KbName('UnifyKeyNames');
[keyIsDown, secs, keyCode] = KbCheck();
boolEsc=any(strcmpi(KbName(keyCode),'escape'));
else
... |
f6b5907d8da2cc178c3a86080791aeb6db3d9a50f84ed884aaf099caed793ec0 | MATLAB | 427 | 16 | % OV_MATLAB toolkit
% OV_setChannelLocalizationInputHeader.m
% -------------------------------
% Author : Laurent Bonnet (INRIA)
% Date : 28/07/2011
% Set the header information on a Stimulation input.
function box_out = OV_setStimulationsInputHeader(box_in, input_index)
box_in.inputs{input_index}.header.t... |
9c5328d9b6995435e16e69e4282d2ed9ba87dd6883da61266a1a05d84a56a45a | MATLAB | 428 | 20 | ns = 3; ny = 3; nz = 3;
N = ns*ny*nz;
P = zeros(N);
P = sort([0, rand(1,N-1), 1]);
P = P(end:-1:2)-P(end-1:-1:1);
P = P/sum(P);
Pzys = reshape(P,nz,ny,ns);
Psy = squeeze(sum(Pzys,1))';
Psz = squeeze(sum(Pzys,2))';
maxiter = 1000;
T = 1;
innerstop = 1;
eps = 6;
[UI,~]=admUIg(Psy, Psz, T, inne... |
e7ecca4ec5e280775692c49a0f3f04d756b944065ee33381115a7ebb8aa0044a | MATLAB | 428 | 17 |
%--------------------------------------------------------------------------------
% func.m
%
% Copyright (C) 2024 Takuya Isomura
% (RIKEN Center for Brain Science)
%
% 2024-10-28
%--------------------------------------------------------------------------------
function y = func(f,x)
y = cell2mat(cellfun(f, x, 'Unifo... |
07f33f9368d00c0ee2505199a53211805e4044fd320d5149b32df4f442ce7732 | MATLAB | 430 | 14 | function [d] = zef_determinant(a,b,c,varargin)
det_dir = 2;
if not(isempty(varargin))
det_dir = varargin{1};
end
if det_dir == 1;
d = a(1,:).*(b(2,:).*c(3,:) - c(2,:).*b(3,:)) - b(1,:).*(a(2,:).*c(3,:) - c(2,:).*a(3,:)) + c(1,:).*(a(2,:).*b(3,:) - b(2,:).*a(3,:));
else
d = a(:,1).*(b(:,2).*c(:,3) - c(:,2... |
0257dbf9a5481a84b65463944f1fb6d35e999388ed8b39de7c39ae253ef17418 | MATLAB | 432 | 16 | function str = zef_string_from_source_model(input)
% Converts a core.ZefSourceModel input into a character array.
switch input
case core.ZefSourceModel.Error
str = 'Error';
case core.ZefSourceModel.Whitney
str = 'Whitney';
case core.ZefSourceModel.Hdiv
str = 'H(div)'
otherwise
... |
c9fa999118effe19df8d00ee6362ef040d0c9cabc7fd7165f78f9e4442531314 | MATLAB | 432 | 16 | function zef_data = zef_get_fields(fieldnames_aux, zef)
%zef_get_data gets the fields of struct zef and returns them
%as the fields of struct zef_data.
%Input: struct zef, cell fieldnames_aux (field names as 1xN cell)
%Output: struct zef.
if nargin == 1
zef = evalin('base','zef');
end
zef_data = struct;
for zef_i... |
f7b52fa4c8e7d5e00f0187dee246075191a613589d8405c170d88cd1ec7c09c7 | MATLAB | 432 | 20 | function data = nl2lin_transform(data, Model, range, thr)
if nargin<3, range = [1.5 max(data.y)]; end
if nargin<4, thr = max(data.y)*3; end
if isempty(Model.nl_model)
disp('No nonlinear model found!')
return
end
ix = data.y>=range(1) & data.y<=range(2);
% transform data
ty = data.y;
ty(ix) = real(feval(Model... |
85eb0cc1a5914ac5b4181224e7aa03ca0ba73d68cbdcd1d103afbaf24f3cdbba | MATLAB | 433 | 6 | set(zef.h_inv_roi_sphere_1 ,'string',num2str(zef.inv_roi_sphere(:,1)'));
set(zef.h_inv_roi_sphere_2 ,'string',num2str(zef.inv_roi_sphere(:,2)'));
set(zef.h_inv_roi_sphere_3 ,'string',num2str(zef.inv_roi_sphere(:,3)'));
set(zef.h_inv_roi_sphere_4 ,'string',num2str(zef.inv_roi_sphere(:,4)'));
set(zef.h_inv_roi_perturbati... |
9119606343d71a14b2d171f324e8bf5b4142473097039aa5d24b68c7a1bb1ae3 | MATLAB | 433 | 14 | function s_points = zef_cem_electrode(zef,s_points)
if isempty(s_points)
s_points = [];
else
current_sensors = eval('zef.current_sensors');
s_points = [ ...
s_points(:,1:3), ...
eval(['zef.' current_sensors '_electrode_outer_radius(:)']), ...
eval(['zef.' current_sensors '_electrode... |
d5f35840d451f51f511ec446025cab83a4cf4cb940a914a94792ce9bbbced2ec | MATLAB | 433 | 14 | function [stim_descrps] = WhatStims(data)
%This functions takes in data in cell array format where each cell is a NEL
%picture and returns what stims were run in this set of data.
stim_descrps = {};
for i = 1:length(data)
data_i = data{i};
if isfield(data_i.Stimuli, 'short_description')
stim_descrps{n... |
61d041cea6ea6e720e64190e89d1a42bc7960aaf0411f64889172bdd7dcbef68 | MATLAB | 434 | 12 | train = hmm.train;
orders = train.orders;
order = max(orders); if isempty(order), order = 0; end
if ~isfield(train,'Sind')
if isfield(hmm.train,'V') && ~isempty(hmm.train.V)
train.Sind = ones(size(hmm.train.V,2),hmm.train.ndim);
else
train.Sind = formindexes(orders,train.S);
end
if ~tra... |
f5ef674789c7ab36602abff593302b57afddce9cda003c88b8b59fba39642981 | MATLAB | 434 | 23 | function clabel(varargin)
%clabel Assigns label to color axis (colorbar)
% clabel([handle],strTitle)
%assert inputs
assert(nargin <3);
assert(nargin >0);
any(cellfun(@ischar,varargin))
assert(any(cellfun(@ischar,varargin)));
%get handle
if nargin == 1
drawnow;
hBar = cbhandle('force');
strTit = va... |
a15a90bd1ada7b456b705927a8d9b875566eb9fef173f2d7d56d206241ecdc4f | MATLAB | 436 | 16 | function set_common_plot_settings(app_plot)
% sets settings common to gui plots
app_plot.Title.FontName = 'Arial';
app_plot.Title.FontSize = 12;
app_plot.TitleFontWeight='bold';
app_plot.TitleFontSizeMultiplier=1;
app_plot.LabelFontSizeMultiplier=1;
app_plot.FontName='Arial';
app_plot.FontSize=12;
disableDefaultIntera... |
c9b9c87e2fa673422ea9883aff08bd47f30ac09526653afbb36ffcbb2dc5801c | MATLAB | 439 | 23 | % plot a pixel over time
function plotpixels2fPRO( f, s1, s2, s3, x, y )
frames = size( s1, 3 );
xx = linspace(1,frames,frames);
p1 = zeros( frames, 1 );
p1(:,1) = s1( x, y, : );
p2 = zeros( frames, 1 );
p2(:,1) = s2( x, y, : );
p3 = zeros( frames, 1 );
p3(:,1) = s3( x, y, : );
figure(f)
yyaxis left
plot(xx,p1)
ylabe... |
40cbfddc4ba400304e13e7021f620803e61402a55e2f26b436a720769baff38d | MATLAB | 440 | 19 | function zef = zef_check_curvature_range(zef)
editBox = zef.h_synth_source_ROI_curvature;
value = str2double(editBox.String);
if isnan(value)
value = 0;
elseif value < -1
value = -1;
warning('Curvature value was set to -1. Must be between -1 and 1.')
elseif value > 1
value = 1;
w... |
66dbbb79f6912afb33011015e431d9de42e246065d55bf7feac785aad27b12d9 | MATLAB | 440 | 21 | function [vec,I]=greatsort(x);
%GREATSORT sorts the vector x in descending order.
%
% Required input arguments:
% x : vector to be sorted
%
% Output arguments:
% vec : sorted vector
% I : index => x(I)=vec.
%
% I/O: [vec,I]=greatsort(x);
%
% This function is part of LIBRA: the Matlab Library for Robust Ana... |
7e056e2218bfed8d2ba340d6299c8ec4f315ac90215071f65311f034841a2db2 | MATLAB | 440 | 6 | zef.inv_roi_sphere(:,1) = str2num(get(zef.h_inv_roi_sphere_1,'string'))';
zef.inv_roi_sphere(:,2) = str2num(get(zef.h_inv_roi_sphere_2,'string'))';
zef.inv_roi_sphere(:,3) = str2num(get(zef.h_inv_roi_sphere_3,'string'))';
zef.inv_roi_sphere(:,4) = str2num(get(zef.h_inv_roi_sphere_4,'string'))';
zef.inv_roi_perturbation... |
85c38fd47724dedf31c89f041cbbb6a9fe079e6c5e7495d00bd959bbebaa0aeb | MATLAB | 440 | 18 | function zef_delete_transform
if not(evalin('base','zef.lock_transforms_on'))
table_data = evalin('base','zef.h_transform_table.Data');
transforms_selected = evalin('base','zef.transforms_selected');
for i = 1 : length(transforms_selected)
evalin('base',['zef.h_transform_table.Data{' num2str(tab... |
35e57cbe49ed49d85ab37d8dc17a3dbd5271512c43f4354d3636348db52711ed | MATLAB | 441 | 14 | function [nodes_new, triangles_new, nodes_ind, triangles_ind] = zef_minimal_mesh(nodes, triangles)
if size(triangles,1) >= 0.01*size(nodes,1)
triangles_new = triangles;
nodes_new = nodes;
nodes_ind = [1:size(nodes,1)]';
triangles_ind = [1:size(triangles,1)]';
else
[nodes_ind,~,triangles_ind] = uniq... |
86925dd6720d9a815224f2822c698a586b42acb50f5dd4f7e9357389e806aa5e | MATLAB | 441 | 14 | function DDATA=bsliang_rejBLOCKdata(TDATA,rej_ind)
% blockˮƽɾÊý¾Ý
EMPTY.rawdata=[];
EMPTY.half_threshold=[];
EMPTY.threshold_boundaries=[];
for i=1:size(rej_ind,1)
% rej_ind ¡ú ROW1: subj, ROW2: condition, ROW3: turn
block_rej=rej_ind(i,2);
turn_rej=rej_ind(i,3);
... |
ec9b67873a5a5f8b9ff10581c91189bb2968a0342419a6918c846990f77ccbf0 | MATLAB | 441 | 16 | function zef_delete_sensors
if not(evalin('base','zef.lock_sensor_names_on'))
table_data = evalin('base','zef.h_sensors_name_table.Data');
sensors_selected = evalin('base','zef.sensors_selected');
for i = 1 : length(sensors_selected)
evalin('base',['zef.h_sensors_name_table.Data{' num2str(table_d... |
76bfdcdceaea0a49c33dfb90b7d97ca950a84ec11e72670b43f86595fe21f353 | MATLAB | 442 | 20 | function [COV P1] = covariances_p300(X,Y,method_cov,arg_cov)
if nargin < 3
method_cov = 'scm';
arg_cov = {};
end
if size(Y)~=size(X(:,:,1))
P1 = mean(X(:,:,Y==1),3);
else
P1 = Y;
end
X2 = zeros(size(X,1)+size(P1,1),size(X,2),size(X,3));
for i=1:size... |
e72804eb79c1318a69b98ce332a5b4eabc12c6db1a347696afdd1621521cc130 | MATLAB | 443 | 18 |
function [Feat C] = Tangent_space(COV,C)
NTrial = size(COV,3);
N_elec = size(COV,1);
Feat = zeros(N_elec*(N_elec+1)/2,NTrial);
if nargin<2
C = riemann_mean(COV);
end
index = reshape(triu(ones(N_elec)),N_elec*N_elec,1)==1;
P = C^-0.5;
for i=1:NTrial
%Tn = C^-0.5*RiemannLogMap(C,COV(:,:,i))*C^-0.5;
Tn = l... |
008736999b885923b01616b3a9485bff71535736d6a60217c775c54593e8e82d | MATLAB | 444 | 19 | function [rois] = quick_extract_rois(rois_data)
f = fieldnames(rois_data);
rois = struct();
rois.xpix = cell(length(f), 1);
rois.ypix = cell(length(f), 1);
rois.boundaryOutlines = cell(length(f), 1);
for neuron = 1:length(f)
rois.xpix{neuron} = double([rois_data.(f{neuron}).x]);
rois.ypix{neuron} = double([r... |
a6bb2ec4f16f5c6d15335ba906e35b32ca89b0cc3127b3f5c7b1fffe5b4b2f45 | MATLAB | 446 | 19 | function obj = stats_all(obj)
% Calculate all available statistics
obj.stats = [] ;
obj = obj.stats_duration ;
obj = obj.stats_coverage ;
obj = obj.stats_occurrence ;
obj = obj.stats_hurst ;
obj = obj.stats_complexity ;
obj = obj.stats_autoinformation ;
obj = obj.stats_m... |
1d8df61bf4a8a20a4b7c56c994d5374fe29f8fb6cb4ddc48a1d05f68a865f240 | MATLAB | 447 | 13 | zef.filter_epoch_points = [];
zef.filter_save_file_path = './data';
zef.filter_save_file = '';
zef.filter_name_list = cell(0);
zef.filter_file_list = cell(0);
zef.filter_parameter_list = cell(0);
zef.filter_list_selected = '';
zef.filter_sampling_rate = zef.inv_sampling_frequency;
zef.filter_tag = 'Default tag';
zef.fi... |
960dc92970badd4d11beac8f5a7a2c2c4ddc32d9050137c3bbc360f29cb8c5a2 | MATLAB | 447 | 18 | [zef.file,zef.file_path] = uigetfile('*.dat');
if not(isequal(zef.file,0))
zef.h_aux = fopen([zef.file_path '/' zef.file]);
zef.aux_field = textscan(zef.h_aux,'%s');
for zef_i = 1 : length(zef.aux_field{1})
evalin('base',['zef.' zef.current_sensors '_name_list{' num2str(zef_i) '} = ''' zef.aux_fi... |
af5bc75b81f89d91b34770cdeeef3fdf346e021fae6b604fadd0cc9bf1567efb | MATLAB | 447 | 26 | function [workingHashes] = zef_dataBank_hashToWorkingSpace(newHash, workingHashes)
if ~iscell(newHash)
newHash={newHash};
end
if ~iscell(workingHashes)
workingHashes={workingHashes};
end
for i=1:length(newHash)
duplicate=0;
for wh=1:length(workingHashes)
if strcmp(newHash{i}, workingHashes{w... |
ebcfedceb9421eb07105c3af07627ae3468f703e6bc7c912bef3453f4a4d555e | MATLAB | 447 | 31 | function M = zef_surface_scalar_matrix_FF(nodes,tetra,scalar_field)
%
% zef_surface_scalar_matrix_FF
%
% TODO: Sampsa should document this.
%
% Inputs:
%
% - nodes
%
% TODO: explanation.
%
% - tetra
%
% TODO: explanation.
%
% - scalar_field
%
% TODO: explanation.
%
% Outputs:
%
% - M
%
% TODO: explanation.
%
w... |
fc7505e765a0fa9182445409b4c3af5d2d807e6b820663c071d99fcf08336216 | MATLAB | 447 | 23 | function zef = zef_ES_update_plot_data(varargin)
if nargin == 0
zef = evalin('base','zef');
else
zef = varargin{1};
end
switch zef.ES_plot_type
case 1
[zef.h_current_ES, zef.h_current_coords] = zef_ES_plot_current_pattern;
case 2
zef_ES_plot_barplot;
case 3
zef_ES_plot_error... |
225dd375e0a61aaa5de74780bf6f06259da5c563581acd000853f3de54743d3d | MATLAB | 448 | 19 | cellPaths = strsplit(path(),';');
%remove paths
fprintf('Cleaning paths... [%s]\n',getTime);
intRem = 0;
cellRemove = {'backup','.git','.ignore','old'};
for intPath=1:numel(cellPaths)
strPath = cellPaths{intPath};
cellFolders = strsplit(strPath,filesep);
if any(ismember(cellFolders,cellRemove))
rmpath(strPath);
... |
6a306d1ab05a12082435d8383841f09f549e806c70e8f577d1461c87978195b8 | MATLAB | 448 | 17 | function c = circcol(m,chroma)
%REDBLUEPURPLE
if nargin < 1, m = size(get(gcf,'colormap'),1); end
if nargin < 2,chroma = 45; end %38
theta = linspace(0, 2*pi, m)'; % hue
a = chroma * cos(theta);
b = chroma * sin(theta);
L = (ones(1, m)*65)'; % lightness (65)
Lab = [L, a, b];
c=colorspace('RGB<-Lab',Lab(end... |
efd38bd88d47055be156def79e69f76c1983389b42916268b4688f512ea2e569 | MATLAB | 448 | 12 | zef.source_direction_mode = 1;
zef.inv_sampling_frequency = 2400;
zef.inv_low_cut_frequency = 0;
zef.inv_high_cut_frequency = 0;
evalin('base',['zef.' zef.compartment_tags{1} '_sources = 3;']);
evalin('base',['zef.' zef.compartment_tags{2} '_sources = 2;']);
zef = zef_build_compartment_table(zef);
zef_mesh_tool;
zef = ... |
1e2032476dcd350141fbbef5bc4e8cc9b8c9a395ac7c14d0da9579cf2c2c5e59 | MATLAB | 449 | 24 | function zef_dpq_wireframe_plot
w_t = evalin('base','zef.wireframe_triangles');
w_n = evalin('base','zef.wireframe_nodes');
h_a = evalin('base','zef.h_axes1');
hold on;
%axes(h_a);
h_t = trimesh(w_t,w_n(:,1),w_n(:,2),w_n(:,3));
h_t.EdgeColor = 'none';
h_t.FaceColor = 0.5*[1 1 1];
h_l = light;
h_l.Position = [1 0 0]... |
4b624e38439132f873525c9ce6ac3277a448c2f7eb9af8c3c517209b220b051f | MATLAB | 450 | 19 | function TP = getTransProbs (hmm)
% Returns the transition probabilies from any state to any other state,
% without considering the persistence probabilities (i.e. the probability
% to remain in the same state)
%
% Author: Diego Vidaurre, University of Oxford (2017)
TP = hmm.P;
[K,~,Q] = size(TP);
for j = 1:Q
TPj =... |
9910f5c3cafdd80b0ac82073fb7789b6894a4af3e598a62ad73288833d01dd87 | MATLAB | 451 | 14 | function [data, udf, rois, nil_neurons, nil_frames] = secondary_validation(data, udf, rois)
[data, udf, nil_neurons, nil_frames] = secondary_validation_dataset(data, udf);
udf = secondary_validation_udf(udf);
rois = secondary_validation_rois(rois, data);
if ~isempty(nil_neurons)
... |
0af2ae831c4d99d94fab9212dc201801573c369d2388133e8a70b74e827339b3 | MATLAB | 452 | 12 | zef_data.fieldnames = fieldnames(zef_data);
zef_data.remove_fieldnames = cell(0);
zef_j = 0;
for zef_i = 1 : length(zef_data.fieldnames)
if isobject(eval(['zef_data.' zef_data.fieldnames{zef_i}]))
zef_j = zef_j + 1;
zef_data.remove_fieldnames{zef_j} = zef_data.fieldnames{zef_i};
end
end
zef_data... |
5080fb6376fd85368159629296026c2b5029079a7e1e4b7e62892d85a3b9581e | MATLAB | 452 | 16 | %Create points after merging all l/RH labels load of each merged label;
a = load ('lh_labels_76.asc');
c = a([3:end],[1:4]);
save lh_point_76.dat c
b = load ('rh_labels_76.asc');
d = b([3:end],[1:4]);
save rh_point_76.dat d
e = load ('lh_labels_36.asc');
f = e([3:end],[1:4]);
save lh_point_36.dat f
g = load ('lh_labels... |
7e13dafb3b0c389fc2345862b8d630f6dd6cdd05fef9e376c44e36c558b70ff5 | MATLAB | 452 | 22 | function [logp] = logmvnpdf(x,mu,Sigma)
% outputs log likelihood array for observations x where x_n ~ N(mu,Sigma)
% x is NxD, mu is 1xD, Sigma is DxD
% Author : Benjamin Dichter
[N,D] = size(x);
const = -0.5 * D * log(2*pi);
xc = bsxfun(@minus,x,mu);
term1 = -0.5 * sum((xc / Sigma) .* xc, 2); % N x 1
term2 = const... |
925f053e59a6f66de2be5e345c1ce6cac6560883ede902ba83f6cc1e9b452e46 | MATLAB | 452 | 17 | [zef.file,zef.file_path] = uigetfile({'*.dat;*.mat'});
if not(isequal(zef.file,0))
zef.aux_field_1 = load([zef.file_path '/' zef.file]);
zef.aux_field_2 = [];
if isstruct(zef.aux_field_1)
zef.aux_field_2 = fieldnames(zef.aux_field_1);
zef.resection_points = zef.aux_field_1.(zef.aux_field_... |
5ab883652d91142057de9741b18c8b59b877ff015476dcba68fb8defdae8b77b | MATLAB | 454 | 13 | function zef_sensors_name_table_selection(hObject,eventdata,handles)
sensors_selected = eventdata.Indices(1);
evalin('base', ['zef.current_sensor_name = ' num2str(sensors_selected) ';']);
evalin('base','run(''zef_init_sensor_parameters'')');
sensors_selected = eventdata.Indices(:,1);
sensors_selected = unique(sensor... |
156055b66cf2dd5911c5141bb2b35ef0a178d013dd36a093e07ae7825c959fda | MATLAB | 456 | 19 | function [vecY] = getGamma(vecP,vecX)
%getGamma Gamma function
% [vecY] = getGamma(vecP,vecX)
%
%function:
% vecY = vecUseP(5)+vecUseP(3)*gampdf(vecX*vecUseP(4),vecUseP(1),vecUseP(2));
%vecP(1): alpha
%vecP(2): beta
%vecP(3): y-scale
%vecP(4): x-scale
%vecP(5): y-offset
%% assign input
vecUseP = [1 1 1... |
fdb6c8e73c6c282acff9c257df69508783d0cc108c4491207b95a18ee4ff3a24 | MATLAB | 456 | 19 | function zef_histogram(parameter_vec)
%Histogram
axes(evalin('base','zef.h_axes1'));
h_axes = evalin('base','zef.h_axes1');
cla(h_axes,'reset');
h_hist = histogram(log10(parameter_vec),200);
h_hist.FaceColor = [0.5 0.5 0.5];
hist_y = (h_hist.Values);
hist_x = 0.5*(h_hist.BinEdges(1:end-1)+h_hist.BinEdges(2:end));
s... |
7f8d1b8ea7f27884462806082a78fbe8368042e534415283d6cd523f4030a097 | MATLAB | 457 | 18 | function compute_power(params,bidsID)
% Load EEG data
data = load_preprocessed_data(params,bidsID);
% Average power spectrum across epochs in the range 1-100 Hz
cfg = [];
cfg.foilim = [1 100];
cfg.method = 'mtmfft';
cfg.taper = params.Taper;
cfg.tapsmofrq = params.Tapsmofrq;
cfg.pad = 5;
cfg.padtype = 'zero';
cfg.outp... |
1ac9e448914573d063a1759d100144945490ff185bf75586c8bcb8846cf054d3 | MATLAB | 460 | 13 | function zef_source_tree_addroot_pushed(~, ~, ~)
%ZEF_SOURCE_TREE_ADDROOT_PUSHED Add a new root node to the source tree.
zef = evalin('base','zef');
% Add child directly under the tree root
zef_source_tree_add_child( ...
zef.h_source_tree.SourceTree, 'NewNode');
zef.source_tree = zef_build_source... |
e2b4a41899dfc1eb1965f71657d3b51cb0c8d3ab8a2a71f00369a1a7ab7bec98 | MATLAB | 460 | 13 | function perform_parameter_estimation_button_pushed(app)
app.params.stage = 3;
estimate_parameters_implementation_specific_call(app);
update_p_lambda_text(app);
update_best_model_text(app);
plot_potentials(app);
update_learned_models(app);
update_unlearned_models(app);
wrap_seeds_into_op... |
f93b33ff7aa0cdc405c0a864c1500ad146af960381b3a2c51a19c6aefd086cd0 | MATLAB | 460 | 20 | function barycentra = zef_tetra_barycentra(nodes, tetrahedra)
% Calculates the barycenters of the given tetrahedra (4-tuples of node
% indices).
arguments
nodes (:,3) double {mustBeNonNan}
tetrahedra (:,4) double {mustBeInteger, mustBePositive}
end
barycentra = 1 / 4 * ( ...
nodes(tetrahedra(:,1),:) ...
... |
17082a82e2b57bf092920514a951e6962229fc1de73eac5d17d0fc38c5839111 | MATLAB | 461 | 15 | function [h_node_output, node_found] = zef_dataBank_treeSearch(h_node_input, node_name)
node_found = 0;
h_node_output = [];
i = 0;
while i < length(h_node_input.Children) && not(node_found)
i = i + 1;
if isequal(h_node_input.Children(i).Text, node_name)
node_found = 1;
h_node_output = h_node_in... |
7d3be858c5395bfae4575cb0bb679dad27cbe6011231f95e5cbb7fdf6b7414e6 | MATLAB | 461 | 14 | function vecP = contpoisspdf(vecRate,dblLambda)
%contpoisspdf Continuous-support approximation of Poisson pdf
% vecP = contpoisspdf(vecRate,dblLambda)
%
%Works in log-domain to avoid numerical issues, using the following formula:
%vecP = exp(vecRate.*log(dblLambda) - dblLambda - gammaln(vecRate+1));
%
%Version... |
a4e43d0b2e3f1ffc316b36304151c030c7228da575a0905a31d30c71e764a2fc | MATLAB | 461 | 8 | function zef_dpq_selection(hObject,eventdata,handles)
functions_selected = eventdata.Indices(:,1)';
evalin('base',['zef.dpq_selected = [' num2str(functions_selected) ']'';']);
evalin('base',['zef.h_dynamical_plot_queue_script.Value=zef.h_dynamical_plot_queue_table.Data{' num2str(functions_selected(1)) ',1};']);
evalin... |
1bf079552a37c1927c2f1f8f7ab2e9e5d901616a57a63c5834097be97b306cd7 | MATLAB | 462 | 12 | zef_update_filter_tool;
zef.processed_data = zef.raw_data;
if isstr(zef.filter_pipeline_selected)
zef.filter_pipeline_selected = {zef.filter_pipeline_selected};
end
for zef_j = 1 : length(zef.filter_pipeline_list)
zef.aux_field = str2func(zef.filter_pipeline{zef_j}.file);
zef.filter_parameters = zef.filter_... |
547733328fb5e41c3b8f241d4c23cc37425e4552fb05386d9c9b9002888f9415 | MATLAB | 462 | 12 | function txt = getDataTipsTDPRO(~, info, plane, stack1, stack2, stack3, ifig, dfig)
%disp(info);
%disp( append('testcallback: ', num2str(info.Position(1)), num2str(info.Position(2)) ) );
y = info.Position(1);
x = info.Position(2);
%info.target
%img = getimage(info.target);
z = plane(x, y);
... |
666bd8dcc601e4da0982696142058081145d545ef13dfb863bae6d720986d6ae | MATLAB | 462 | 15 | % OV_MATLAB toolkit
% OV_setSettings.m
% -------------------------------
% Author : Laurent Bonnet (INRIA)
% Date : 28/07/2011
% This file is meant to be executed prior to any user defined script.
% It construct the objects used by the other functions of the toolkit
% MEANT TO BE USED BY OPENVIBE
function box_out =... |
e789c17a71ced34b807932828edb169cd5d5130d4402c13aef91126ea695fea7 | MATLAB | 464 | 18 | % tuto1_signal_filter_Initialize.m
% -------------------------------
% Author : Laurent Bonnet (INRIA)
% Date : 25 May 2012
%
% The function tuto1_signal_filter_Initialize is called when pressing 'play' in the scenario.
%
function box_out = tuto1_signal_filter_Initialize(box_in)
disp('Matlab initialize function ha... |
7ba638554ca825482b8739ef80bfd32f3dbe23fb7d919cd4704448bd48a9d377 | MATLAB | 469 | 19 | function [vecY] = getGammaWithXoffset(vecP,vecX)
%getGamma Gamma function
% [vecY] = getGamma(vecP,vecX)
%
%function:
% vecY = vecUseP(5)+vecUseP(3)*gampdf(vecX*vecUseP(4),vecUseP(1),vecUseP(2));
%vecP(1): alpha
%vecP(2): beta
%vecP(3): y-scale
%vecP(4): x-scale
%vecP(5): x-offset
%% assign input
vecUs... |
3b5d35a9c76133b3a91533bb0121aa005647150f2b6b5ab80ec5d96f3342224d | MATLAB | 470 | 17 | function [subdomain_ind] = zef_find_subdomain_ind(domain_labels, domain_labels_with_subdomains)
unique_domain_labels = unique(domain_labels);
subdomain_ind = zeros(length(domain_labels),1);
for i = 1 : length(unique_domain_labels)
I_1 = find(domain_labels==unique_domain_labels(i));
subdomain_aux = domain_labels_with... |
a7133f6f597009fada482e3d778113b90c2c608b96a4faf3aef72dd647bfc9e6 | MATLAB | 470 | 30 | function out = is_eof ( in )
%
% is_eof
%
% Provides a human-readable one-liner for checking whether one of Matlab's
% older file reading functions encountered an end of file marker, when reading
% a file.
%
% Input:
%
% - in
%
% Either plain text, if not an EOF character, or an integer -1.
%
% Output:
%
% - out
%
% ... |
a7b5d8015d456d88c4503a913534462d28356e0271c482208eeaa5963f2411cd | MATLAB | 470 | 21 | function mov = movieTime( stack, cropfactor )
% 8 bit conversion
%[smin, smax] = minmax(stack);
sz=size(stack);
xs=cropfactor*sz(1);
ys=cropfactor*sz(2);
xe=sz(1)-xs;
ye=sz(2)-ys;
stack8b = dbl2uint8( stack(xs:xe,ys:ye,:) );
%[s8bmin, s8bmax] = minmax(stack8b);
% convert to multiframe array
MF8b = stack2MFarray( stack8... |
7a5e12cd8370968c9644d6a754573ead936f8d4c3d61f7f4c52d833f7c32cdee | MATLAB | 471 | 17 | function s = logsumexp(X, dim)
% Compute log(sum(exp(X),dim)) while avoiding numerical underflow.
% By default dim = 1 (columns).
% Written by Mo Chen (sth4nth@gmail.com).
if nargin == 1,
% Determine which dimension sum will use
dim = find(size(X)~=1,1);
if isempty(dim), dim = 1; end
end
% subtract the ... |
94f574b4b9b2f53bb7a6bb3d5acc4e8f4381da9792269ad255bb0f2ad8e1562d | MATLAB | 472 | 11 | %Copyright © 2018- Sampsa Pursiainen & ZI Development Team
%See: https://github.com/sampsapursiainen/zeffiro_interface
if isvalid(zef.h_zeffiro)
zef.h_zeffiro.DeleteFcn = '';
end
zef.h_fig_aux = findall(groot, 'Type','figure','-regexp','Name','ZEFFIRO Interface: Figure tool*');
%zef.h_fig_aux = findall(groot, '-pro... |
bbc27e1e6b3c31813f75629aa1486b871bbec5fc6bee8313ab20bf440846ae24 | MATLAB | 473 | 18 | function Y = multiherm(X)
% Returns the Hermitian parts of the matrices in the 3D matrix X
%
% function Y = multiherm(X)
%
% Y is a 3D matrix the same size as X. Each slice Y(:, :, i) is the
% Hermitian part of the slice X(:, :, i).
%
% See also: multiprod multitransp multihconj multiscale multiskew
% This file is par... |
321e24eab8836787925509fca1c8e1147f4def85febe7e6e20ef09f21857c293 | MATLAB | 474 | 15 | % myobj = SetTriggerOnBeep( myobj, hertz, millisec )
%
% Set frequency and duration of Windows beep signalling
% file creation. hertz=0 disables the beep. Command has
% no effect if not currently running.
%
function [s] = SetTriggerOnBeep( s, hertz, millisec )
if( ~IsRunning( s ) )
warning( 'No... |
a2a8407035b79330b554b481ac65f9a07235b8974a6b522cf111eda5923e3576 | MATLAB | 475 | 34 | function is_int = float_is_int ( float )
%
% float_is_int
%
% Checks whether a floating point number is an integer up to machine epsilon accuracy.
%
arguments
float (:,:) double
end
is_int = true ;
if any ( isnan ( float (:) ) )
is_int = false ;
end
if not ( all ( isfinit... |
2280f3bf4d6d70d9450f15d8ab2886291f48043656ef39288e143ebd5e613e72 | MATLAB | 476 | 14 | function [file_name] = zef_bst_get_project_file_name(h_parent)
if nargin < 1
h_parent = get(gcbo,'Parent');
end
settings_file_name = h_parent.settings_file_name;
folder_name = h_parent.folder_name;
subfolder_name = h_parent.project_subfolder_name;
[settings_file_path, settings_file_name] = fileparts(settings_file_nam... |
e48d99122988886884f782a78bc941969da7bac3cf6834ba7dcf16f84aa6a536 | MATLAB | 476 | 18 | % myobj = SetAudioEnable( myobj, bool_flag )
%
% Set audio output on/off. Note that this command has
% no effect if not currently running.
%
function [s] = SetAudioEnable( s, b )
if( ~isnumeric( b ) )
error( 'SetAudioEnable arg 2 should be a Boolean value {0,1}.' );
end
if( ~IsRunning( s )... |
09e3af5603959c0449f0455bb0c03799b7ce14452394089fa657d283f05b61bf | MATLAB | 477 | 15 | % myobj = SetTriggerOffBeep( myobj, hertz, millisec )
%
% Set frequency and duration of Windows beep signalling
% file closure. hertz=0 disables the beep. Command has
% no effect if not currently running.
%
function [s] = SetTriggerOffBeep( s, hertz, millisec )
if( ~IsRunning( s ) )
warning( 'N... |
e9b24b3b4a152c97ce1338f775b7a86b921d8e6b97fb540f6577b9a8b2df986d | MATLAB | 477 | 13 | function zef_transform_table_selection(hObject,eventdata,handles)
transform_selected = eventdata.Indices(1);
evalin('base', ['zef.current_transform = ' num2str(transform_selected) ';']);
evalin('base','run(''zef_init_transform_parameters'')');
transforms_selected = eventdata.Indices(:,1);
transforms_selected = uniqu... |
c10afb950d34dabbc389edb1c9aa64334910dc203d33dd7eb040695dfa458cf5 | MATLAB | 478 | 9 | function merge_pdfs(fileNames, outputFile)
% Benjamin Großmann (2023). Merge PDF-Documents (https://www.mathworks.com/matlabcentral/fileexchange/89127-merge-pdf-documents),
% MATLAB Central File Exchange. Retrieved February 7, 2023.
memSet = org.apache.pdfbox.io.MemoryUsageSetting.setupMainMemoryOnly();
merger = org.ap... |
c44d8fa2b0e88ba13e5c42158cd1786c489b018c0277369fe8000a39e40c8264 | MATLAB | 480 | 24 | function [V, COV2] = riemann_diag(COV,methodcov)
if nargin <2
methodcov = 'cov';
end
C = mean_covariances(COV,'riemann');
T = Tangent_space(COV,C);
[V, ~] = eig(covariances(T,methodcov));
W = V(:,end)*inv(V(:,end)'*V(:,end))*V(:,end)';
T2 = W'*T;
% T2 = V(:,end)'*T;
% T2 = cat(1,zeros(size(T,1)-1,size(T,2)),T2);... |
035c094b737c73c593ebf871a83e3323f18f6fdfbac8ffe3dede8b1cd49d10f1 | MATLAB | 481 | 18 | function s = logsumexp(x, dim)
% Compute log(sum(exp(x),dim)) while avoiding numerical underflow.
% By default dim = 1 (columns).
% Written by Michael Chen (sth4nth@gmail.com).
if nargin == 1,
% Determine which dimension sum will use
dim = find(size(x)~=1,1);
if isempty(dim), dim = 1; end
end
% subtract... |
4492ead28016b26dfcf50d9db31c4b8a4ed1b75fcf2425366878f040f07ad9b1 | MATLAB | 481 | 20 | function [model_stats] = collect_models(models)
last_model = models{end}; % just grabbing the fields from the last one
% grab all the names of the structure's fields
fields = fieldnames(last_model);
num_models = length(models);
model_stats=struct();
for some_field = 1:length(fields)
field = fields{some_field};... |
5bb57671d5a39279b6254d1495d042732ff551c42d3674196054d247a5884040 | MATLAB | 482 | 14 | function Ypred = continuous_prediction_2class(Y,Ypred)
% Which one is the most likely class, out of a continuous estimation?
[N,q] = size(Y); % N is time points
L = length(unique(Y(:)));
if q == 1 && L == 2 % class is -1 or +1
Ypred(Ypred<=0) = -1;
Ypred(Ypred>0) = +1;
elseif q > 1 && L == 2 % dummy variable r... |
e10ad1a1984a358b4074f465cb72ae81baede8dbc11fd0e73f57ad4b75b346e3 | MATLAB | 482 | 13 | function cellOut = groupby(varData,varGroups)
%groupby Summary of this function goes here
% cellOut = groupby(varData,vecGroups)
if ndims(varGroups) ~= ndims(varData) || ~all(size(varData) == size(varGroups))
error([mfilename ':DimensionMismatch'],'Size of data and grouping variable are different');
end
[vecGr... |
62025f01dbd4a69c0fd3ce2c446ed446c949887109342f72193107fc94d87bd1 | MATLAB | 483 | 19 | function generate_data_preview(app)
app.data_preview = axes('Parent', app.IOModelPanel, 'Units', 'pixels',...
'OuterPosition', [351 23 512 256],...
'InnerPosition', [370.73 42.73 487.2667 216.9667],...
'Box', 'on');
set_common_plot_settings_white(app.data_preview);
set_no_tick(app.data_preview);
app.da... |
97dabb408da1e0d2b4da5b33490dde7305d350f51c75cd1a71fd60f234b4b693 | MATLAB | 483 | 15 | function generate_ensemble_graph(app)
app.ensemble_graph = axes('Parent', app.EnsembleGraphStructure, 'Units', 'pixels',...
'OuterPosition', [61.4 58.4 299.1 234.3], 'InnerPosition', [22 23 347 289], 'Box', 'on');
set_common_plot_settings(app.ensemble_graph);
set_no_tick(app.ensemble_graph);
app.ensemble_graph.... |
10729053d2237a04ac4950605349c237cbe8d28582d55a2d45e6ea7db1ebf595 | MATLAB | 484 | 18 | function Y = multiskewh(X)
% Returns the skew-Hermitian parts of the matrices in the 3D matrix X.
%
% function Y = multiskewh(X)
%
% Y is a 3D matrix the same size as X. Each slice Y(:, :, i) is the
% skew-Hermitian part of the slice X(:, :, i).
%
% See also: multiskew multiprod multitransp multiscale multisym
% This ... |
7ad9c9699d6455cfd84ad4a1dd91d19383397f831364c178926772b11c3628b4 | MATLAB | 484 | 15 | % calculate mean frame F0 dFoF0
function gaussStack = spatGauss(stack,sigma,npixels)
% assumes stack is height x width x frames
tic
height = size( stack, 1);
width = size( stack, 2);
frames = size( stack, 3);
gaussStack = zeros( height, width, frames, class(stack) );
for f = 1 : frames
frame = stack(:,:,f);
gau... |
5d4f44ca8fbf14cc72508d4b4ed677854bd2c60a5b246cdfa501086364bed6c6 | MATLAB | 485 | 21 | function COV = UnTangent_space(T,C)
NTrial = size(T,2);
N_elec = (sqrt(1+8*size(T,1))-1)/2;
COV = zeros(N_elec,N_elec,NTrial);
if nargin<2
C = riemann_mean(COV);
end
index = reshape(triu(ones(N_elec)),N_elec*N_elec,1)==0;
Out = zeros(N_elec*N_elec,NTrial);
Out(not(index),:) = T;
P = C^0.5;
for i=1:NTrial
tmp ... |
e96560ab7a6f469d519ae6590d9ba826ee864df1df261b5fd4f37e88ebd09f37 | MATLAB | 485 | 11 | function [L, measurements] = zef_lead_field_no_normalization(lf_bank_index)
%Copyright © 2018- Sampsa Pursiainen & ZI Development Team
%See: https://github.com/sampsapursiainen/zeffiro_interface
%This function normalizes the lead field data for a given lead
%field bank entry.
%Description: No normalization
L = evalin(... |
2e37198e187d0081ec0ca1901181e1722f28628e9845136e1920cd02180d3fb3 | MATLAB | 486 | 17 | function [v_mag, v_dir, v_vec] = zef_nse_mean_velocity_roi(zef,nse_field)
roi_ind = zef_nse_roi_ind(zef,nse_field);
v_1 = 0;
v_2 = 0;
v_3 = 0;
for i = 1 : length(zef.nse_field.bv_vessels_1)
v_1 = v_1 + mean(zef.nse_field.bv_vessels_1{i}(roi_ind));
v_2 = v_2 + mean(zef.nse_field.bv_vessels_2{i}(roi_ind));
v_3 = v_3... |
517f4917b2be45a73d3a180500474e41f725ebf9b2e12a96b2d7debd219043bb | MATLAB | 486 | 18 |
%--------------------------------------------------------------------------------
% plotdist.m
%
% Copyright (C) 2025 Takuya Isomura
% (RIKEN Center for Brain Science)
%
% 2025-06-20
%--------------------------------------------------------------------------------
function plotdist(x,data,col,wid)
y = mean(data,'omi... |
0313c6e4c8e469fbd162a12e02f2bcd1d4c7ca5416ec6629097e2dab661735fe | MATLAB | 487 | 26 | function zef_plot_dpq(type,zef)
if nargin == 1
if evalin('base','exist(''zef'',''var'');')
zef = evalin('caller','zef');
else
zef = [];
end
end
if not(isempty(zef))
dpq_table = eval('zef.dynamical_plot_queue_table');
for dpq_ind = 1 : size(dpq_table,1)
if str2num(dpq_tab... |
17de7be9523f7d1d9fe97ef7e180aefb7f3e923d6688f9dc479f79b4be947352 | MATLAB | 487 | 21 | function ET_timer(varargin)
%UNTITLED Summary of this function goes here
% Detailed explanation goes here
%Enable,'off'
%check if windows machine
%% get globals
global sEyeFig
%% set disk I/O
if ispc
[intFlagOut,strReturn]=system('typeperf -sc 0.1 -si 1 "\LogicalDisk(C:)\% Disk Time');
cellLines =s... |
c343acf0a8b8c3a88c79a8cbba1260c3dbb4892bc08254e77c82acaef1d90da1 | MATLAB | 487 | 22 | % A = LogaffineMeanCOV(B,epsilon,tol)
%
% Calcul de la moyenne des matrice de covariances selon la distance log affine.
% A : médiane des K matrices NxN
%
% B : Matrice NxNxK
% epsilon : Pas de la descente de gradient
% tol : arret de la descente si le critère < tol
function A = logeuclid_mean(B)
K = size(B,3); % No... |
340dcbefaba380d22f4f939af524f0b2b197f66fa911610a3f904f92ed0f3cf1 | MATLAB | 488 | 22 | function zef = zef_delete_sensor_sets(zef)
if nargin == 0
zef = evalin('base','zef');
end
table_data = eval('zef.h_sensors_table.Data');
sensor_sets_selected = eval('zef.sensor_sets_selected');
for i = 1 : length(sensor_sets_selected)
if not(table_data{sensor_sets_selected(i),4})
eval(['zef.h_sensors... |
0037c8c4e69229124e8ac143589df1bd8dca5fd12a928372c1ad1cceab54423b | MATLAB | 490 | 25 | function [nlist]= select_list(tau_list,parm)
% ----- grid search list for tau
Nlist = length(tau_list);
Nloop = fix(Nlist/parm.Ncpu);
Nrest = Nlist - Nloop*parm.Ncpu;
Nnum = zeros(1,parm.Ncpu);
for n=1:parm.Ncpu
if n <= Nrest
Nnum(n) = Nloop + 1;
else
Nnum(n) = Nloop;
end
end
nstart = sum(N... |
32d76bf241a896fbe0e5a47ab8f4eab74647556ff48d260642a0090b24ea9092 | MATLAB | 491 | 9 | function zef = zef_DBS_attach_electrodes(zef)
eval(['zef.' zef.current_sensors '_points=zef.strip_struct.electrode_data;']);
eval(['zef.' zef.current_sensors '_electrode_outer_radius=zef.strip_struct.electrode_data(:,4);']);
eval(['zef.' zef.current_sensors '_electrode_inner_radius=zef.strip_struct.electrode_data(:,5)... |
a6e0f49f8b0ea056416d4ed6b3ac339841a566b6d7cf7506eefccd7b7027e12d | MATLAB | 491 | 21 | function plot_data_preview(app)
% pull out to make sure we don't manipulate during plotting
data = app.data;
xLimits = [1 size(data,1)];
yLimits = [1 size(data,2)];
app.data_preview.NextPlot = 'replacechildren';
app.data_preview.XLim = xLimits;
app.data_preview.YLim = yLimits;
colormap(app.data_preview, flipud(gray)... |
0a2e153c7c715eee361ae954c3130df9a269a47067ca0383a690fad6aaa517d6 | MATLAB | 493 | 22 |
%--------------------------------------------------------------------------------
% sig.m
%
% This analysis is included in
% Experimental validation of the free-energy principle with in vitro neural networks
% Takuya Isomura, Kiyoshi Kotani, Yasuhiko Jimbo, Karl Friston
%
% Copyright (C) 2022 Takuya Isomura
% (RIKEN C... |
fb4972954e53be08446d17cd88d9b7d8f676fd258a933a046f5a5e9313ceced0 | MATLAB | 494 | 35 | function M = zef_volume_scalar_matrix_FG(nodes,tetra,g_i_ind,scalar_field)
%
% zef_volume_scalar_matrix_FG
%
% TODO: Sampsa should document this.
%
% Inputs:
%
% - nodes
%
% TODO: explanation.
%
% - tetra
%
% TODO: explanation.
%
% - g_i_ind
%
% TODO: explanation.
%
% - scalar_field
%
% TODO: explanation.
%
% O... |
3a978e1901c69d7e08d9998409184cba6de00f39a6d6f8ab6cb69bf81b67b36f | MATLAB | 495 | 11 | function [y_vals, plot_mode] = zef_time_series_plot(time_series)
%Copyright © 2018- Sampsa Pursiainen & ZI Development Team
%See: https://github.com/sampsapursiainen/zeffiro_interface
%This function processes the N-by-M data array f for N channels and M time
%steps. The other arguments can be controlled via the ZI user... |
fb80692f1e063d120418761b1a25642d84b55218f43de4a9b918f93c3e9dbe86 | MATLAB | 495 | 24 | function [p,z,r1,r2,S] = corrtest2(x1,y1,x2,y2)
%corrtest2 Tests difference between correlations r(x1,y1) and r(x2,y2)
% [p,z,r1,r2,S] = corrtest2(x1,y1,x2,y2)
%calc Pearson corr & n
r1 = corr(x1(:),y1(:));
n1 = numel(x1);
r2 = corr(x2(:),y2(:));
n2 = numel(x2);
%sd
S = sqrt((1/(n1-3))+(1/(n2-3)));
%... |
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