sha256 stringlengths 64 64 | language stringclasses 28
values | size int32 1 491k | lines int32 1 23.2k | content stringlengths 1 200k |
|---|---|---|---|---|
234de89911fa978b44e9610b99d64fa8467d40169cf13f13e8371662ae5bdae5 | Shell | 1,287 | 36 | # Generate the pdbs in the format that zdock needs them.
masif_root=$(git rev-parse --show-toplevel)
# The route to your zdock directory
#zdock_dir=$masif_root/ext_programs/zdock3.0.2_mac_intel/
zdock_dir=./
# The benchmark list
benchmark_list=$masif_root/comparison/masif_ppi_search_ub/benchmark_list.txt
# Location of ... |
e94200c5473d355aeb900dfb8d150eaffe49291012c364f0007476da157a9810 | Shell | 1,287 | 33 | #!/bin/bash
# Copyright 2021 Huawei Technologies Co., Ltd
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law ... |
c637d5ac783ba106787e35683c57ed36b32945e7c1d86f0d6acef5715e185052 | Shell | 1,288 | 50 | #!/bin/bash
# Copyright 2022 Huawei Technologies Co., Ltd
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law ... |
c803e1fe1f57fc52561bead01effe1f963e24575a8cae8e39c80e0f488231d0f | Shell | 1,288 | 40 | #!/usr/bin/env bash
# Copyright 2015 David Snyder
# Apache 2.0.
#
# This script, called by ../run.sh, creates the HUB4 Broadcast News
# data directory. The required datasets can be found at:
# https://catalog.ldc.upenn.edu/LDC97S44
# https://catalog.ldc.upenn.edu/LDC97T22
set -e
sph_dir=$1
transcript_dir=$2
data... |
3d8e29b7c0a051c3240859b0027bb96eeb730bd2f4e0d1d39acd53d493514e1f | Shell | 1,289 | 22 | #!/bin/bash
#SBATCH --job-name=cat_fi_amp
#SBATCH --output=/scratch/janine.bijsterbosch/WAPIAW_2/task_residuals/log/job_%j.out
#SBATCH --error=/scratch/janine.bijsterbosch/WAPIAW_2/task_residuals/log/job_%j.err
#SBATCH --time=23:55:00
#SBATCH --cpus-per-task=16
#SBATCH --mem-per-cpu=500MB
sub_list=/scratch/janine.bij... |
47b7be4d64339da96ee33ad6592cea280349862aa2c1e2dde72929cad698074c | Shell | 1,289 | 22 | #!/bin/bash
#SBATCH --job-name=rs_fi_amp
#SBATCH --output=/scratch/janine.bijsterbosch/WAPIAW_2/task_residuals/log/job_%j.out
#SBATCH --error=/scratch/janine.bijsterbosch/WAPIAW_2/task_residuals/log/job_%j.err
#SBATCH --time=167:55:00
#SBATCH --cpus-per-task=16
#SBATCH --mem-per-cpu=750MB
sub_list=/scratch/janine.bij... |
dfc86864c100607ec5dd19dc1b96e1177aeba7bee099273d30a65d322196d882 | Shell | 1,289 | 22 | #!/bin/bash
#SBATCH --job-name=avg_fi_amp
#SBATCH --output=/scratch/janine.bijsterbosch/WAPIAW_2/task_residuals/log/job_%j.out
#SBATCH --error=/scratch/janine.bijsterbosch/WAPIAW_2/task_residuals/log/job_%j.err
#SBATCH --time=23:55:00
#SBATCH --cpus-per-task=16
#SBATCH --mem-per-cpu=500MB
sub_list=/scratch/janine.bij... |
d29b938b978bc1abec41bdb7856e44bc9d0166a72fdd06c66bfffa738b1271b5 | Shell | 1,290 | 22 | #!/bin/bash
#SBATCH --job-name=rs_fi_amp
#SBATCH --output=/scratch/janine.bijsterbosch/WAPIAW_2/task_residuals/log/job_%j.out
#SBATCH --error=/scratch/janine.bijsterbosch/WAPIAW_2/task_residuals/log/job_%j.err
#SBATCH --time=167:55:00
#SBATCH --cpus-per-task=16
#SBATCH --mem-per-cpu=750MB
sub_list=/scratch/janine.bij... |
935fd3c3846f5066778b08ee7eb4aa0e0124307cfccb53159b49852e15ad3cb8 | Shell | 1,292 | 43 | #!/bin/bash
# Copyright 2021 Huawei Technologies Co., Ltd
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law... |
040744cb448f635a1621806bff7173467c6692107845b967c45d673c43c0f4e1 | Shell | 1,293 | 22 | #!/bin/bash
#SBATCH --job-name=avg_fi_amp
#SBATCH --output=/scratch/janine.bijsterbosch/WAPIAW_2/task_residuals/log/job_%j.out
#SBATCH --error=/scratch/janine.bijsterbosch/WAPIAW_2/task_residuals/log/job_%j.err
#SBATCH --time=23:55:00
#SBATCH --cpus-per-task=16
#SBATCH --mem-per-cpu=500MB
sub_list=/scratch/janine.bij... |
8b5b069d2e39cc19d625e6675a1de6856af6c16079a04dde81773b0d6d9b11c0 | Shell | 1,294 | 22 | #!/bin/bash
#SBATCH --job-name=cat_amp_nc
#SBATCH --output=/scratch/janine.bijsterbosch/WAPIAW_2/task_residuals/log/job_%j.out
#SBATCH --error=/scratch/janine.bijsterbosch/WAPIAW_2/task_residuals/log/job_%j.err
#SBATCH --time=167:55:00
#SBATCH --cpus-per-task=16
#SBATCH --mem-per-cpu=1G
sub_list=/scratch/janine.bijst... |
b7f08a87896b8b042ac9e050bca35c9e63d8c8b5276fa7cc71bab7d4033dfd1f | Shell | 1,294 | 22 | #!/bin/bash
#SBATCH --job-name=cat_amp_fi
#SBATCH --output=/scratch/janine.bijsterbosch/WAPIAW_2/task_residuals/log/job_%j.out
#SBATCH --error=/scratch/janine.bijsterbosch/WAPIAW_2/task_residuals/log/job_%j.err
#SBATCH --time=167:55:00
#SBATCH --cpus-per-task=16
#SBATCH --mem-per-cpu=1G
sub_list=/scratch/janine.bijst... |
40830afd1d31097adbfac01f5d533c7933a8f8fa5814bafbf0d3a4d151ed3583 | Shell | 1,295 | 22 | #!/bin/bash
#SBATCH --job-name=rs_nc_amp
#SBATCH --output=/scratch/janine.bijsterbosch/WAPIAW_2/task_residuals/log/job_%j.out
#SBATCH --error=/scratch/janine.bijsterbosch/WAPIAW_2/task_residuals/log/job_%j.err
#SBATCH --time=23:55:00
#SBATCH --cpus-per-task=16
#SBATCH --mem-per-cpu=500MB
sub_list=/scratch/janine.bijs... |
6ae0f1a56c95e26d6ae030b9bf5d04390be53c5da18d75621fa25ec6b01bb1bd | Shell | 1,295 | 22 | #!/bin/bash
#SBATCH --job-name=rs_fi_amp
#SBATCH --output=/scratch/janine.bijsterbosch/WAPIAW_2/task_residuals/log/job_%j.out
#SBATCH --error=/scratch/janine.bijsterbosch/WAPIAW_2/task_residuals/log/job_%j.err
#SBATCH --time=23:55:00
#SBATCH --cpus-per-task=16
#SBATCH --mem-per-cpu=500MB
sub_list=/scratch/janine.bijs... |
469faa2360dfbfbb7e802a83b16b0cb37fd3cc23a9a88de53dacedccfae76f54 | Shell | 1,296 | 31 | #!/bin/bash
# Copyright 2022 Huawei Technologies Co., Ltd
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law... |
e113b239b39d360409667ed2c16a3ff8212fa8961a8317e4142a8b934e766e53 | Shell | 1,296 | 22 | #!/bin/bash
#SBATCH --job-name=avg_fi_amp
#SBATCH --output=/scratch/janine.bijsterbosch/WAPIAW_2/task_residuals/log/job_%j.out
#SBATCH --error=/scratch/janine.bijsterbosch/WAPIAW_2/task_residuals/log/job_%j.err
#SBATCH --time=167:55:00
#SBATCH --cpus-per-task=16
#SBATCH --mem-per-cpu=500MB
sub_list=/scratch/janine.bi... |
e5919fc03ddd334089f75aca0aa8c124c4612465907078885b8c0b21aa32af50 | Shell | 1,298 | 22 | #!/bin/bash
#SBATCH --job-name=kit_sink
#SBATCH --output=/scratch/janine.bijsterbosch/WAPIAW_2/task_residuals/log/job_%j.out
#SBATCH --error=/scratch/janine.bijsterbosch/WAPIAW_2/task_residuals/log/job_%j.err
#SBATCH --time=6-23:55:00
#SBATCH --cpus-per-task=16
#SBATCH --mem-per-cpu=1G
sub_list=/scratch/janine.bijste... |
38f64fd280a837001eeaeabe2ed687691159af67c18baa3c42e9a5f2033b8713 | Shell | 1,300 | 22 | #!/bin/bash
#SBATCH --job-name=rs_fi_amp
#SBATCH --output=/scratch/janine.bijsterbosch/WAPIAW_2/task_residuals/log/job_%j.out
#SBATCH --error=/scratch/janine.bijsterbosch/WAPIAW_2/task_residuals/log/job_%j.err
#SBATCH --time=167:55:00
#SBATCH --cpus-per-task=16
#SBATCH --mem-per-cpu=750MB
sub_list=/scratch/janine.bij... |
a9172ad27b82ed061d89149ed2f06e0bbfd8d5b9b6ad531a6c3ee9176ce90aab | Shell | 1,300 | 49 | #!/usr/bin/env bash
outDir=exp/lat
mkdir -p $outDir
stage=2
if [ $stage -lt 1 ]; then
# First convert all lattices into the pruned, minimized version
decodeDir=exp/tri5a/decode_dev
acousticScale=0.08333
local/latconvert.sh $outDir $decodeDir $acousticScale
decodeDir=exp/tri5a/decode_test
acousticScale=... |
f0eabb30e7ba33fe9a1c6fdc15fb2fef74b861c838db931b7aaf42d4f00c685a | Shell | 1,300 | 38 | BLOW5_FILE=$1
READ_LEN=$2
TRAIN_SIZE=$3
TEST_SIZE=$4
PREFIX=$5
export slow5tools=$HOME/DeepSelectNet/tools/slow5tools-v0.3.0/slow5tools
if [ ! -x "$slow5tools" ]; then
echo "slow5tools does not exists in provided directory. Please provide correct path as -> export slow5tools=<path_slow5tools>" && exit
fi
echo "Pro... |
1f04d59f91ce07ab20bc2094558fee4a1c30a4f0b6b33a1791a53806e65c3440 | Shell | 1,301 | 37 | #!/usr/bin/env bash
# Copyright Johns Hopkins University (Author: Daniel Povey) 2012-2013.
# Hong Kong University of Science and Technology (Ricky Chan) 2013. Apache 2.0.
orig_args=
for x in "$@"; do orig_args="$orig_args '$x'"; done
# begin configuration section. we include all the options that score_scli... |
044d856487e1f0bc70cbb5a8248af6670e4505cee35c91457c52899df087f327 | Shell | 1,302 | 22 | #!/bin/bash
#SBATCH --job-name=cat_amp_nc
#SBATCH --output=/scratch/janine.bijsterbosch/WAPIAW_2/task_residuals/log/job_%j.out
#SBATCH --error=/scratch/janine.bijsterbosch/WAPIAW_2/task_residuals/log/job_%j.err
#SBATCH --time=6-23:55:00
#SBATCH --cpus-per-task=16
#SBATCH --mem-per-cpu=1G
sub_list=/scratch/janine.bijs... |
78a4de876fbb3541830b9b04527fe617c543f60f49babf6d0ffd21d6716b9e6d | Shell | 1,302 | 22 | #!/bin/bash
#SBATCH --job-name=cat_amp_fi
#SBATCH --output=/scratch/janine.bijsterbosch/WAPIAW_2/task_residuals/log/job_%j.out
#SBATCH --error=/scratch/janine.bijsterbosch/WAPIAW_2/task_residuals/log/job_%j.err
#SBATCH --time=6-23:55:00
#SBATCH --cpus-per-task=16
#SBATCH --mem-per-cpu=1G
sub_list=/scratch/janine.bijs... |
b8a0e03a1daee15f7be8994f4165fd9b32403fa9aa5fd87212d6a1102a0b6c97 | Shell | 1,302 | 22 | #!/bin/bash
#SBATCH --job-name=rs_fi_amp
#SBATCH --output=/scratch/janine.bijsterbosch/WAPIAW_2/task_residuals/log/job_%j.out
#SBATCH --error=/scratch/janine.bijsterbosch/WAPIAW_2/task_residuals/log/job_%j.err
#SBATCH --time=167:55:00
#SBATCH --cpus-per-task=16
#SBATCH --mem-per-cpu=750MB
sub_list=/scratch/janine.bij... |
55201dc81ef26cb16167d4c7bea6aa504d4957470b617bbf886c164c1775991a | Shell | 1,303 | 40 | #!/usr/bin/env bash
# Copyright 2015-2016 Sarah Flora Juan
# Copyright 2016 Johns Hopkins University (Author: Yenda Trmal)
# Copyright 2017 Radboud University (Author: Emre Yilmaz)
# Apache 2.0
corpus=$1
set -e -o pipefail
if [ -z "$corpus" ] ; then
echo >&2 "The script $0 expects one parameter -- the location... |
50d8d86516ed1817d65a3253ee61cd01d090ba4bfecf9d5a1f99f82da19b23ce | Shell | 1,305 | 22 | #!/bin/bash
#SBATCH --job-name=kit_sink
#SBATCH --output=/scratch/janine.bijsterbosch/WAPIAW_2/task_residuals/log/job_%j.out
#SBATCH --error=/scratch/janine.bijsterbosch/WAPIAW_2/task_residuals/log/job_%j.err
#SBATCH --time=6-23:55:00
#SBATCH --cpus-per-task=16
#SBATCH --mem-per-cpu=1G
sub_list=/scratch/janine.bijste... |
7210bbfc3e7d79af8fe2732bd6c1e854765be4facd1cb1dc1c0fa0e77886d8e6 | Shell | 1,305 | 48 | #!/bin/bash
#
# Copyright 2017 Johns Hopkins University (Author: Shinji Watanabe, Yenda Trmal)
# 2021 Johns Hopkins University (Author: Desh Raj)
# Apache 2.0
# This scripts prepares the data directory from the enhanced wav files and the
# RTTM file.
. ./utils/parse_options.sh # accept options.. you ca... |
be2f2603c8109735a9dd7fd6b4f56a71bb2b1305d43f53a763b66f341afe6ab5 | Shell | 1,306 | 51 | #!/usr/bin/env bash
# Copyright 2012 Vassil Panayotov
# 2017 Ewald Enzinger
# Apache 2.0
. ./path.sh || exit 1
echo "=== Building a language model ..."
dir=data/local/lm/
text=data/train/text
lexicon=data/local/dict/lexicon.txt
# Language model order
order=3
. utils/parse_options.sh
# Prepare a LM tra... |
aa0df1a9641bab144a6809cfdf287ab2b7a6d0b2f425a3d5e42575a1a2f3f295 | Shell | 1,307 | 22 | #!/bin/bash
#SBATCH --job-name=cat_amp_nc
#SBATCH --output=/scratch/janine.bijsterbosch/WAPIAW_2/task_residuals/log/job_%j.out
#SBATCH --error=/scratch/janine.bijsterbosch/WAPIAW_2/task_residuals/log/job_%j.err
#SBATCH --time=167:55:00
#SBATCH --cpus-per-task=16
#SBATCH --mem-per-cpu=1G
sub_list=/scratch/janine.bijst... |
987356efdb6abe315bbc6db0d311dd9f5fa9bc1d7f6a558e0d2fa243160411ff | Shell | 1,308 | 39 | #!/bin/bash
# Copyright 2023 Huawei Technologies Co., Ltd
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law ... |
bff3e9734870d2f613c7975f8ee38d1fe5dc09910c31bead5ac7a25d45f1c7a3 | Shell | 1,308 | 38 | # Channels
# pas
python manage.py save_model_properties NMLCH000172 ALL
# Na
python manage.py save_model_properties NMLCH000124 ALL
# K
python manage.py save_model_properties NMLCH001520 ALL
# Cav
python manage.py save_model_properties NMLCH000014 ALL
# Ih
python manage.py save_model_properties NMLCH001446 ALL
# KCa
py... |
c49f734f5bc0f6b93777ec4c4b79819d9c479deb79f7afb71ee52818ca46ec6f | Shell | 1,308 | 46 | #!/bin/bash
# Copyright 2022 Huawei Technologies Co., Ltd
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law ... |
e1f9485829ac118201cbdbbc533ea4c932d6c683ef8d1d11e5d00a6c4ccb485e | Shell | 1,309 | 50 | #!/bin/bash
# Copyright 2022 Huawei Technologies Co., Ltd
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law ... |
1081ae8f04f287a88267061dadf604dcf602dbb41b6e35ac9c65b6b753834ea5 | Shell | 1,310 | 42 | #!/bin/bash
# Copyright 2021 Huawei Technologies Co., Ltd
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law ... |
9710d1b98eeb52ef3edad0b79ecb9b2f664087076fc5d2537d7225c21f20059a | Shell | 1,310 | 50 | #!/bin/bash
# Copyright 2022 Huawei Technologies Co., Ltd
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law ... |
c5fe7c769bc96f51e9a16872289c700b49075f7eb1fb7dcfd148acb0efbe0dfb | Shell | 1,310 | 35 | #!/bin/sh
echo "set read only = ${NEOREADONLY} then launch neo4j service"
sed -i s/read_only=.*/read_only=${NEOREADONLY}/ ${NEOSERCONF} && \
echo 'Allow new plugin to make changes..'
echo 'dbms.security.procedures.unrestricted=apoc.*,gds.*' >> ${NEOSERCONF}
if [ -n "${BACKUPFILE}" ]; then
if [ ! -d /data/databases/... |
38fd52d9948ca725d92ddb7202d4714767aeafca91f5bd6422dbfdb1114b9d6c | Shell | 1,312 | 22 | #!/bin/bash
#SBATCH --job-name=cat_amp_nc
#SBATCH --output=/scratch/janine.bijsterbosch/WAPIAW_2/task_residuals/log/job_%j.out
#SBATCH --error=/scratch/janine.bijsterbosch/WAPIAW_2/task_residuals/log/job_%j.err
#SBATCH --time=167:55:00
#SBATCH --cpus-per-task=16
#SBATCH --mem-per-cpu=1G
sub_list=/scratch/janine.bijst... |
2328cc4380d28e37d2b01ef22a8f16ca957462a9738f6a93daf38549f91216bc | Shell | 1,314 | 37 | #!/bin/bash
# Copyright 2018 AIShell-Foundation(Authors:Jiayu DU, Xingyu NA, Bengu WU, Hao ZHENG)
# 2018 Beijing Shell Shell Tech. Co. Ltd. (Author: Hui BU)
# Apache 2.0
# This is a shell script, and it download and process DaCiDian for Mandarin ASR.
. ./path.sh
dir=data/local/dict
if [ $# -ne 1 ]; then
... |
7c2e727f1aa00e684043040c6c8bb6b411a3d74174da6f58c61a05599270d3a1 | Shell | 1,314 | 30 | #!/bin/bash
# Copyright 2021 Huawei Technologies Co., Ltd
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law ... |
ae7eeb8485ba6d5214744c99bdf270538492b0b60d0910e49b638baee7144900 | Shell | 1,314 | 22 | #!/bin/bash
#SBATCH --job-name=kit_sink
#SBATCH --output=/scratch/janine.bijsterbosch/WAPIAW_2/task_residuals/log/job_%j.out
#SBATCH --error=/scratch/janine.bijsterbosch/WAPIAW_2/task_residuals/log/job_%j.err
#SBATCH --time=6-23:55:00
#SBATCH --cpus-per-task=16
#SBATCH --mem-per-cpu=1G
sub_list=/scratch/janine.bijste... |
550fc72c99b61eaf5200fd05dcb75658ea5b2947437cb845e08dcb1f1d383eff | Shell | 1,319 | 30 | # Set multiprocessing parameters
export MKL_NUM_THREADS=10
export NUMEXPR_NUM_THREADS=10
export OMP_NUM_THREADS=10
PROCESSES=3 # Number of networks to simulate in parallel
REPEATS=20 # Total number of networks to simulate
# Run derivative simulations in DRN with IA KO and several input baselines
for baseline_ in "-0... |
053cb7946aa20869b0b38a587707745902210541af0a2cd1abb2f8ce78a129c7 | Shell | 1,321 | 50 | #!/bin/bash
# Copyright 2022 Huawei Technologies Co., Ltd
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law ... |
d0340d0a9a05ee2f2e7bdf452ff5c1af66a909c367bc0e6625caa800a8790daf | Shell | 1,321 | 35 | #!/bin/bash
# Copyright 2021 Huawei Technologies Co., Ltd
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law ... |
dac6146eb874ba4b0ccb6451d94f1b8f29f9ac2409244af9de66038c30b3bb41 | Shell | 1,321 | 45 | #!/bin/bash
# Copyright 2021 Huawei Technologies Co., Ltd
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law... |
24d1822652bac6408355a8f9f53be1459f641f8730dec5e30ecd54e24c06e024 | Shell | 1,323 | 23 | # you can change cmd.sh depending on what type of queue you are using.
# If you have no queueing system and want to run on a local machine, you
# can change all instances 'queue.pl' to run.pl (but be careful and run
# commands one by one: most recipes will exhaust the memory on your
# machine). queue.pl works with Gri... |
d4d506f253119b952d96c278c1be5e91b107aa15b3861d3e9cbff28b849146fb | Shell | 1,324 | 45 | #!/bin/bash
# Copyright 2021 Huawei Technologies Co., Ltd
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law ... |
fea497857462167feb9ddbc2683066f5750ec4918d3698bbd14cc51f2e9d548c | Shell | 1,324 | 18 | #! /bin/bash
python mkdoc.py -o docStrings.h -std=c++17 -I ../../include/genn/third_party -I ../../include/genn/genn/ ../../include/genn/genn/*.h ../../include/genn/genn/code_generator/backendBase.h ../../include/genn/genn/code_generator/backendCUDAHIP.h
if [[ -n "$CUDA_PATH" ]]; then
python mkdoc.py -o cudaBackendD... |
610a6b7eaa8ab1cacfb86e863d54e56246159ccc73ab350440855e29d8830697 | Shell | 1,325 | 30 | #!/bin/bash
#SBATCH --gres=gpu:1
#SBATCH --mem=64G
#SBATCH --cpus-per-task=8
#SBATCH --time=2-20:00:00
#SBATCH --mail-user=email@email.com
#SBATCH --mail-type=ALL
#SBATCH --output=/localscratch/authorid/%x_%j_%N.out
#SBATCH --error=/localscratch/authorid/%x_%j_%N.err
#SBATCH --job-name s9_accdrop_bgnb_mrnet
#SBATCH --p... |
a2edb24e45762e0e7c95f1565d4b4aac6c88075da0f5434753b4e81bdc60ff61 | Shell | 1,325 | 30 | #!/bin/bash
#SBATCH --gres=gpu:1
#SBATCH --mem=64G
#SBATCH --cpus-per-task=8
#SBATCH --time=2-20:00:00
#SBATCH --mail-user=email@email.com
#SBATCH --mail-type=ALL
#SBATCH --output=/localscratch/authorid/%x_%j_%N.out
#SBATCH --error=/localscratch/authorid/%x_%j_%N.err
#SBATCH --job-name s6_accdrop_bgnb_mrnet
#SBATCH --p... |
a873f3f95f7dd57533de10701fbd20f4488b4104a3a7e6d255c0d9a33ac7fd74 | Shell | 1,325 | 30 | #!/bin/bash
#SBATCH --gres=gpu:1
#SBATCH --mem=64G
#SBATCH --cpus-per-task=8
#SBATCH --time=2-20:00:00
#SBATCH --mail-user=email@email.com
#SBATCH --mail-type=ALL
#SBATCH --output=/localscratch/authorid/%x_%j_%N.out
#SBATCH --error=/localscratch/authorid/%x_%j_%N.err
#SBATCH --job-name s7_accdrop_bgnb_mrnet
#SBATCH --p... |
cdf40555eb2c885233d7a29a3d602e91feadae9d68f4f831c3b9c61e112d095c | Shell | 1,325 | 30 | #!/bin/bash
#SBATCH --gres=gpu:1
#SBATCH --mem=64G
#SBATCH --cpus-per-task=8
#SBATCH --time=2-20:00:00
#SBATCH --mail-user=email@email.com
#SBATCH --mail-type=ALL
#SBATCH --output=/localscratch/authorid/%x_%j_%N.out
#SBATCH --error=/localscratch/authorid/%x_%j_%N.err
#SBATCH --job-name s8_accdrop_bgnb_mrnet
#SBATCH --p... |
3625379013b21ae0072f7d7f1ea9098fa45098f079ecd63a3de8a16f83995f1c | Shell | 1,326 | 39 | #!/bin/bash
#usage: sh callerwise_annotation.sh <caller>[gatk-haplotype|samtools|platypus|freebayes] <sites.txt> <outdir> <out_vcf>
caller=$1;
sites=$2;
outdir=$3;
out_vcf=$4;
echo "extracting variants for $caller"
if [ ${caller} == "platypus" ]; then
grep "${caller}" ${sites} | egrep -v "gatk-haplotype|samtools|f... |
beb06c5ac8aa42bd2767c62a0ddaa573139d304095c9e852e8ef9cdba418c8d5 | Shell | 1,326 | 46 | #!/bin/bash
DATA_NAME=(${@:1:1})
echo ${DATA_NAME}
COV_MODE=(${@:2:1})
echo ${COV_MODE}
WD_NAME="scratch"
LOG_FILE=${DATA_NAME}_heudiconv_run2.log
WD_DIR=${HOME}/${WD_NAME}
DATA_DIR=${WD_DIR}/${DATA_NAME}
CODE_DIR=${WD_DIR}/ET_biomarker/scripts/heudiconv/heudiconv_run2.slurm
SUB_LIST=${DATA_DIR}_subjects.list
CON_IMG=... |
43528e10d0854c9f5a2f6a13ca2ccb3c5760a1e60b42e870ffc182db8d4d4582 | Shell | 1,328 | 22 | #!/bin/bash
#SBATCH --job-name=kit_sink_pro
#SBATCH --output=/scratch/janine.bijsterbosch/WAPIAW_2/task_residuals/log/job_%j.out
#SBATCH --error=/scratch/janine.bijsterbosch/WAPIAW_2/task_residuals/log/job_%j.err
#SBATCH --time=6-23:55:00
#SBATCH --cpus-per-task=16
#SBATCH --mem-per-cpu=1G
sub_list=/scratch/janine.bi... |
d897dffd53b0598525956cdc20f6730f928d1ba99724582be2d8aa64a028e8c5 | Shell | 1,330 | 30 | #!/bin/bash
#SBATCH --gres=gpu:1
#SBATCH --mem=64G
#SBATCH --cpus-per-task=8
#SBATCH --time=2-20:00:00
#SBATCH --mail-user=email@email.com
#SBATCH --mail-type=ALL
#SBATCH --output=/localscratch/authorid/%x_%j_%N.out
#SBATCH --error=/localscratch/authorid/%x_%j_%N.err
#SBATCH --job-name s10_accdrop_bgnb_mrnet
#SBATCH --... |
1dc55dee2a78d20666c6b12980d0b07710096a85ea2286fb9f297af300ec7bed | Shell | 1,334 | 51 | #!/usr/bin/env bash
# Report WER for reports and conversational
# Copyright 2014 QCRI (author: Ahmed Ali)
# Apache 2.0
if [ $# -ne 1 ]; then
echo "Arguments should be the gale folder, see ../run.sh for example."
exit 1;
fi
[ -f ./path.sh ] && . ./path.sh
#set -o pipefail -e
galeFolder=$(utils/make_absolute.s... |
ecd3f61acc7b5f3cc9db9f57eeb0b549013b657a9383f322655629abf7730dfa | Shell | 1,334 | 23 | # you can change cmd.sh depending on what type of queue you are using.
# If you have no queueing system and want to run on a local machine, you
# can change all instances 'queue.pl' to run.pl (but be careful and run
# commands one by one: most recipes will exhaust the memory on your
# machine). queue.pl works with Gri... |
10cb5e8923b1d8c25a7e83a79d1d827e54ed9e2adffb58b2866983951868f06d | Shell | 1,336 | 55 | #!/bin/bash
set -o errexit
if [[ ${MACHTYPE} =~ 'apple' ]]; then
CMAKE=cmake
CMAKE_ARCH="-DCMAKE_OSX_ARCHITECTURES:STRING=x86_64"
else
# Set CMake and library locations
CMAKE=${CMAKE:-/shared/bioapps/cmake-latest/bin/cmake}
TINY_XML_DIR=${TINY_XML_DIR:-/shared/bioapps/tinyxml/tinyxml.x86_64}
BOOST_DIR=${BOOST_D... |
6fb1b5dd576d64ed4d028fbddefb14d3e698eaff1e87473b571eba52e839acdf | Shell | 1,336 | 34 | #!/bin/bash
# Copyright 2021 Huawei Technologies Co., Ltd
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law ... |
49d72408813f21e5f0634ea1442e6b5adea39512ad39e0cebabbcdf594bfb7f9 | Shell | 1,337 | 32 | #!/usr/bin/env bash
# Copyright 2018 Desh Raj
# Apache 2.0
## Download all written works of Jeremy Bentham for the Bentham HWR task LM training
baseurl='http://oll.libertyfund.org/titles/'
savedir=$1
mkdir -p $savedir
declare -a texts=("bentham-the-works-of-jeremy-bentham-vol-1/simple"
"bentham... |
639b10e39299a9614473ea4cf98386fefd2ca38ce3984d1a3da808bdd774111f | Shell | 1,337 | 54 | #!/bin/bash
# Copyright 2022 Huawei Technologies Co., Ltd
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law ... |
dff103000d7b40d8d74ceb18a7869b3efa79db52193c4d0ff7f6780acb3468dd | Shell | 1,337 | 41 | #!/bin/bash
python evalPatchDock.py 1a2k_C_AB
python evalPatchDock.py 1ak4_A_D
python evalPatchDock.py 1avx_A_B
python evalPatchDock.py 1ay7_A_B
python evalPatchDock.py 1d6r_A_I
python evalPatchDock.py 1dfj_E_I
python evalPatchDock.py 1eaw_A_B
python evalPatchDock.py 1ewy_A_C
python evalPatchDock.py 1ezu_C_AB
python ev... |
d84640bc3ea84a4783598bd95bb984b51dcccaca8b419a28218a7ab0fb6f3e15 | Shell | 1,340 | 48 | #!/usr/bin/env bash
# Copyright 2015, Brno University of Technology (Author: Karel Vesely)
# Copyright 2014, University of Edinburgh (Author: Pawel Swietojanski), 2014, Apache 2.0
if [ $# -ne 1 ]; then
echo "Usage: $0 <ami-dir>"
echo " <ami-dir> is download space."
exit 1;
fi
set -eux
dir=$1
mkdir -p $dir
ec... |
82e471f5881ccf8ac7eebb995b9e6e95c315ad0e3ebc1621cfa5b5dd4b90e08e | Shell | 1,341 | 44 | #!/bin/bash
# Copyright 2022 Huawei Technologies Co., Ltd
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law ... |
55fd0bab8afa64be519ae3f265d209689e4f81cbb47d8740fd8950f63a7f3e7e | Shell | 1,342 | 35 | #!/bin/bash
# Copyright 2022 Huawei Technologies Co., Ltd
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law ... |
a159b6e0ffc6c9b3c0f17f235a551ea1fcb648df276310623a2fbf9edf16b802 | Shell | 1,345 | 46 | #!/usr/bin/env bash
# Copyright 2012 Johns Hopkins University (Author: Daniel Povey)
# Apache 2.0
[ -f ./path.sh ] && . ./path.sh
cmd=run.pl
min_lmwt=2
max_lmwt=13
#end configuration section.
[ -f ./path.sh ] && . ./path.sh
. parse_options.sh || exit 1;
if [ $# -ne 3 ]; then
echo "Usage: local/score.sh [--cmd (... |
6c1e879ad7f441f3cee1ed337168ce0b0f1dbb8a721211c5ec24143664f03e2c | Shell | 1,346 | 45 | #!/usr/bin/env bash
# begin configuration section.
cmd=run.pl
wip=0.0
min_lmwt=7
max_lmwt=17
weight=0.5
# end configuration section.
echo "$0 $*" # Printing the command line for logging
[ -f ./path.sh ] && . ./path.sh
. parse_options.sh || exit 1;
if [ $# -ne 5 ]; then
echo "Usage: $0 [--cmd (run.pl|queue.pl...)] ... |
1eaedb75c87b13238c4c10b1ee423d0e6848fff3503f2a096e34c8290bbc46fa | Shell | 1,347 | 55 | #!/bin/bash
# Copyright 2022 Huawei Technologies Co., Ltd
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law ... |
24f5c02c75ea79b3bb3359037782c9ddf0164da593de6c090b93c45461229c2a | Shell | 1,347 | 44 | #!/usr/bin/env bash
# Copyright (c) 2017, Johns Hopkins University (Jan "Yenda" Trmal<jtrmal@gmail.com>)
# 2017 Vimal Manohar
# License: Apache 2.0
# This script prepares the 1996 English Broadcast News (HUB4) corpus.
# /export/corpora/LDC/LDC97S44
# /export/corpora/LDC/LDC97T22
# Begin configuration ... |
d437723ad8dcaa99a8a62a115f6154dea3402a3225f96224b791eda2a28f6382 | Shell | 1,347 | 39 | #!/bin/bash -l
# Batch script to run a serial array job under SGE
# Request ten minutes of wallclock time (format hours:minutes:seconds).
# one job ran on frontend was 60 seconds
#$ -l h_rt=0:10:0
# Request 1 gigabyte of RAM (must be an integer followed by M, G, or T)
# /usr/bin/time --verbose prank gave Maximum res... |
1c4f5b17025fa13f8d27f47adaf01aecef9af8cf4c91605c41196ea288e649b4 | Shell | 1,351 | 44 | #!/bin/bash
# Copyright 2022 Huawei Technologies Co., Ltd
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law ... |
79af7db117c87fc3302c62bbdc36052270c83e47adb658b320fafd10c916cbef | Shell | 1,352 | 47 | #!/bin/bash
# Copyright 2022 Huawei Technologies Co., Ltd
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law ... |
9be1c7a5029820c8c74a63b8211957e97ff383ebe9b383f3c898edbf7e1a9989 | Shell | 1,352 | 47 | #!/bin/bash
# Copyright 2021 Huawei Technologies Co., Ltd
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law ... |
2abff7b381bfaa62635deef00a3b8e44424634783e215953976fa3a90d369b5c | Shell | 1,353 | 23 | #!/bin/bash
FILE=$1
if [[ $FILE != "ae_photos" && $FILE != "apple2orange" && $FILE != "summer2winter_yosemite" && $FILE != "horse2zebra" && $FILE != "monet2photo" && $FILE != "cezanne2photo" && $FILE != "ukiyoe2photo" && $FILE != "vangogh2photo" && $FILE != "maps" && $FILE != "cityscapes" && $FILE != "facades" && $F... |
74f997fc30f6f9c1b25d5268f14cd8e0b624cf2089454811466f77b92efebba1 | Shell | 1,354 | 33 | #!/bin/bash
# Copyright 2022 Huawei Technologies Co., Ltd
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law ... |
20325426b477b29c5205167e18c5c0f7d2069ab290de66bf312c6de17192bfb2 | Shell | 1,355 | 56 | #!/usr/bin/env bash
# Copyright (c) 2017, Johns Hopkins University (Jan "Yenda" Trmal<jtrmal@gmail.com>)
# License: Apache 2.0
# Begin configuration section.
# End configuration section
set -e -o pipefail
set -o nounset # Treat unset variables as an error
my_name=$(basename $PWD)
dest=$1... |
3ca6a511024e3a391ac628e2960ce4ef235ea8c45284e66826d31cbbe3d38512 | Shell | 1,356 | 44 | #!/bin/bash
# Copyright 2022 Huawei Technologies Co., Ltd
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law ... |
6bf68d9846933a2ec53e99a30e1ae9cff604a76d0bb337da53c9171bc08664f7 | Shell | 1,356 | 43 | #!/bin/bash
# Copyright 2021 Huawei Technologies Co., Ltd
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law ... |
c1dcbc55a18e4f9935a0d435a03567910b5c4fbcd0e7fe6a6dd0ee2fb6191048 | Shell | 1,357 | 29 | #!/usr/bin/env bash
# Self-contained environment for the query-recording skill (RUNTIME/client).
# Source before the skill's other scripts: source env.sh
#
# Acts on a *running* CARLA server through the Python API — needs an importable
# `carla` module and a reachable server, NOT UE4_ROOT or a source checkout.
#
# C... |
edd8a4c2a4d60a5f8c14208dfb0e9637c308996f0b58288186c97709e9c784df | Shell | 1,357 | 30 | # Set multiprocessing parameters
export MKL_NUM_THREADS=10
export NUMEXPR_NUM_THREADS=10
export OMP_NUM_THREADS=10
PROCESSES=3 # Number of networks to simulate in parallel
REPEATS=20 # Total number of networks to simulate
# Run derivative simulations in DRN with GABA adaptation grafted onto 5HT
for baseline_ in "-0.... |
48ef1a1870b644469cece375de34d4a23e54cb98c10af4ac6e94231d465f9f12 | Shell | 1,359 | 48 | #!/bin/bash
# Copyright 2021 Huawei Technologies Co., Ltd
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law ... |
6fd38990c5ffabfde6db95769641b7c5f76b24068c8c2dfc55f6759be9129b04 | Shell | 1,359 | 29 | #!/usr/bin/env bash
# Self-contained environment for the replay-recording skill (RUNTIME/client).
# Source before the skill's other scripts: source env.sh
#
# Acts on a *running* CARLA server through the Python API — needs an importable
# `carla` module and a reachable server, NOT UE4_ROOT or a source checkout.
#
# ... |
d9fbc2915308cff4ed96ae73350d58530d101a99d6a19d6fb07971891ee04206 | Shell | 1,360 | 48 | #!/usr/bin/env bash
# Copyright 2015 David Snyder
# Apache 2.0.
#
# See README.txt for more info on data required.
set -e
data_root=$1
data_dir=$2
wget -P data/local/ http://www.openslr.org/resources/15/speaker_list.tgz
tar -C data/local/ -xvf data/local/speaker_list.tgz
sre_ref=data/local/speaker_list
local/make... |
1ba8cc03ddde6f49eeb30ab5f81c01f13739861a076d23851c465c0a641e36e1 | Shell | 1,363 | 22 | #!/bin/bash
#SBATCH --job-name=kit_sink
#SBATCH --output=/scratch/janine.bijsterbosch/WAPIAW_2/task_residuals/log/job_%j.out
#SBATCH --error=/scratch/janine.bijsterbosch/WAPIAW_2/task_residuals/log/job_%j.err
#SBATCH --time=6-23:55:00
#SBATCH --cpus-per-task=16
#SBATCH --mem-per-cpu=1G
sub_list=/scratch/janine.bijste... |
1d273dc2f38e8b52424046020bb9c9653333c0fc8d8baf36ca4b41516646fdb8 | Shell | 1,363 | 22 | #!/bin/bash
#SBATCH --job-name=kit_sink
#SBATCH --output=/scratch/janine.bijsterbosch/WAPIAW_2/task_residuals/log/job_%j.out
#SBATCH --error=/scratch/janine.bijsterbosch/WAPIAW_2/task_residuals/log/job_%j.err
#SBATCH --time=6-23:55:00
#SBATCH --cpus-per-task=16
#SBATCH --mem-per-cpu=1G
sub_list=/scratch/janine.bijste... |
b16e907a29b640ad0fc90e9d8399cb742e24ed2051d18f5356a22906f0709003 | Shell | 1,364 | 48 | #!/bin/bash
DATA_NAME=(${@:1:1})
echo ${DATA_NAME}
WD_DIR=${HOME}/scratch
DATA_DIR=${WD_DIR}/${DATA_NAME}
BIDS_DIR=${DATA_DIR}_BIDS
CODE_DIR=${WD_DIR}/ET_biomarker/scripts/fmriprep
CODE_SLURM=${CODE_DIR}/fmriprep_anat_sub.slurm
CODE_COLLECT=${CODE_DIR}/fmriprep_anat_sub.format
CON_IMG=${WD_DIR}/container_images/fmri... |
e5c231f2f64c39b1a0e74fd9734d568d338fa8e8a8066ad3abcae7491c8d6493 | Shell | 1,364 | 32 | BLOW5_FILE=$1
TRIM_LEN=$2
OUTPUT=$3
export slow5tools=$HOME/DeepSelectNet/tools/slow5tools-v0.3.0/slow5tools
if [ ! -x $slow5tools ]; then
echo "slow5tools does not exists in provided directory. Please provide correct path as -> export slow5tools=<path_slow5tools>" && exit
fi
echo "Start trimming Slow5 reads for $... |
2d5d1b94a708c13b6f6483ef3b73b901078b1adb7b02971452dfc527ad68c18b | Shell | 1,365 | 45 | #!/usr/bin/env bash
# Making dictionary using CSJ data with morpheme analysis.
# from the one in Kaldi s5 recipe in that it uses lower-case --Arnab (Jan 2013)
# To be run from one directory above this script.
. ./path.sh
#check existing directories
[ $# != 0 ] && echo "Usage: local/csj_data_prep.sh" && exit 1;
src... |
51b6faf0f94d47ef7989cecadc516f4510e645c3378ecc6b39d7deb7d708a52c | Shell | 1,367 | 38 | #!/usr/bin/env bash
#
# Copyright 2012 Johns Hopkins University (Author: Daniel Povey). Apache 2.0.
# Takes no arguments.
tmpdir=data/local/tmp
[ ! -f $tmpdir/G.txt ] && echo "No such file $tmpdir/G.txt" && exit 1;
. ./path.sh || exit 1; # for KALDI_ROOT
fstcompile --isymbols=data/lang/words.txt --osymbols=dat... |
a9c1b45505fa29c33032c11b0da18f330882fa9df269b57c6e8370ae2371d848 | Shell | 1,373 | 37 | #!/bin/bash
# Copyright 2020 Huawei Technologies Co., Ltd
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law ... |
67cd82e290f3ee1741e5cabe1914761ed9f3866a559cf9e343be3fa9bd3db765 | Shell | 1,375 | 47 | #!/usr/bin/env bash
# Switchboard-1 training data preparation customized for Edinburgh
# Author: Arnab Ghoshal (Jan 2013)
# To be run from one directory above this script.
## The input is some directory containing the switchboard-1 release 2
## corpus (LDC97S62). Note: we don't make many assumptions about how
## y... |
74779255562cf3956724f7a5dc2b202e2ce0f1cc57767a9f27a92a921ffea3a0 | Shell | 1,375 | 48 | ##########################################################################################
## UGER job submission script
## bulk RNA-seq analysis for 6 samples (d0, d21, d51 of NGN2 iNs in duplicate)
## Step 1 of 3: run trim_galore to trim reads for each of the 6 samples
##
## Author: Yu-Han Hsu, Kalliopi Tsafou
######... |
fb2c2d1747e69a53a12413032394015961386338959a5a9a8fc6dccebb739f5e | Shell | 1,375 | 37 | #!/bin/bash
# Copyright 2020 Huawei Technologies Co., Ltd
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law ... |
bfaa5dbf04da85fece0c7cbb39fb2895a06d7f896760740e182b95e14e75416b | Shell | 1,376 | 29 | #!/usr/bin/env bash
# Self-contained environment for the record-simulation skill (RUNTIME/client).
# Source before the skill's other scripts: source env.sh
#
# Acts on a *running* CARLA server through the Python API — needs an importable
# `carla` module and a reachable server, NOT UE4_ROOT or a source checkout.
#
# ... |
cf18be6fa5c2ca2f4c5928ee5e046b22a6a6a0129779a6bbbc28f22b88572ad1 | Shell | 1,377 | 44 | #!/usr/bin/env bash
# Copyright (c) 2017, Johns Hopkins University (Jan "Yenda" Trmal<jtrmal@gmail.com>)
# 2017 Vimal Manohar
# License: Apache 2.0
# This script prepares the 1997 English Broadcast News (HUB4) corpus.
# /export/corpora/LDC/LDC98S71
# /export/corpora/LDC/LDC98T28
# Begin configuration ... |
5c8439c13a82db729b56179ffc755b3ffc64143f79ce34be969b6a96270b4ec3 | Shell | 1,379 | 47 | #!/usr/bin/env bash
# Copyright 2019 Xingyu Na
# Apache 2.0
. ./path.sh || exit 1;
if [ $# != 2 ]; then
echo "Usage: $0 <corpus-path> <data-path>"
echo " $0 /export/a05/xna/data/magicdata data/magicdata"
exit 1;
fi
corpus=$1
data=$2
if [ ! -d $corpus/train ] || [ ! -d $corpus/dev ] || [ ! -d $corpus/test ]; ... |
bffcb3541eb6075d0a94405ade1097d0e4ba10240764aaecdca5cce9d2e41d71 | Shell | 1,379 | 37 | # This contains the locations of the tools and data required for running
# the GlobalPhone experiments.
KALDIROOT=/exports/home/aghoshal/kaldi/trunk
[ -f $KALDI_ROOT/tools/env.sh ] && . $KALDI_ROOT/tools/env.sh
KALDISRC=$KALDIROOT/src
KALDIBIN=$KALDISRC/bin:$KALDISRC/featbin:$KALDISRC/fgmmbin:$KALDISRC/fstbin
KALDIBI... |
04bae63e37f38ee09808795d1fa98583bd2f1ad5b184c707ee0d73b8d3c8ba3f | Shell | 1,381 | 58 | #!/bin/bash
set -e
echo "Test: Generate data for pretraining the fragment-based sequence models..."
python -m drugex.dataset \
${DATASET_COMMON_ARGS} \
-i ${TEST_DATA_PRETRAINING} \
-o ${PRETRAINING_PREFIX} \
-mt smiles \
${DATASET_FRAGMENT_ARGS}
echo "Test: Done."
echo "Test: Generate data for pretraining the fragm... |
b59a9e14c0da46162e9ab3dc62e05c4e9be71c00b535b8d4eb6cd5dff1c4cdee | Shell | 1,381 | 37 | #!/bin/bash
# Copyright 2020 Huawei Technologies Co., Ltd
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law ... |
b510c747240ef286ffd05c45c4cf4dabdeb664ebbc798267db8a272559952598 | Shell | 1,383 | 60 | #!/bin/bash
set -e
echo "Test: Generate data for pretraining the regular (no fragments) sequence model..."
python -m drugex.dataset \
${DATASET_COMMON_ARGS} \
-i ${TEST_DATA_PRETRAINING} \
-o ${PRETRAINING_PREFIX} \
-mt smiles \
-sm \
-nof
echo "Test: Done."
echo "Test: Generate data for finetuning the regular (no f... |
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