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#!/bin/bash # Copyright 2022 Huawei Technologies Co., Ltd # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law ...
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#!/bin/bash # Copyright 2022 Huawei Technologies Co., Ltd # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law ...
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########################################################################################## ## UGER job submission script ## run global MAGMA analysis for each ASD network (ints vs. genomic background) ## Step 1 of 2: run gene annotation step for each network (same across all traits) ## ## Author: Yu-Han Hsu ###########...
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#!/bin/bash # Copyright 2022 Huawei Technologies Co., Ltd # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law...
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#!/bin/bash # Copyright 2021 Huawei Technologies Co., Ltd # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law ...
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#! /bin/bash # Copyright 2016 Vimal Manohar # Apache 2.0. # This script prepares the North American News Text Supplement Corpus # https://catalog.ldc.upenn.edu/LDC98T30 [ -f ./path.sh ] && . ./path.sh . ./cmd.sh set -e set -o pipefail set -u nj=4 cmd=run.pl . utils/parse_options.sh if [ $# -ne 2 ]; then echo ...
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#!/usr/bin/env bash # This script shows how you can do data-cleaning, and exclude data that has a # higher likelihood of being wrongly transcribed. see the RESULTS file; this # made essentially no difference in our case-- indicating, perhaps, that Fisher # transcripts are already clean enough. . ./cmd.sh . ./path....
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#!/bin/bash # Copyright 2021 Huawei Technologies Co., Ltd # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law ...
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#!/bin/bash # Copyright 2021 Huawei Technologies Co., Ltd # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law ...
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#!/bin/bash #define file locations workdir=~/COEVOL/later_batch tree_loc=~/COEVOL/trees/tree_30sp_for_coevol.txt pheno_loc=~/COEVOL/pheno_coevol coevol_output_loc=$workdir/results_biohpc_good_noCuration #list of leftover proteins declare -a arr=("GI" "body_mass_brain_mass_GI") declare -a arr_run=(1 2 3) cat $workd...
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#!/bin/bash # Copyright 2021 Huawei Technologies Co., Ltd # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law ...
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#!/bin/bash # Copyright 2021 Huawei Technologies Co., Ltd # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law ...
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#!/bin/bash # Copyright 2021 Huawei Technologies Co., Ltd # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law ...
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########################################################################################## ## UGER job submission script ## run global MAGMA analysis for each IGF2BP target list ## Step 1 of 2: run gene annotation step for each list (same across all traits) ## ## Author: Yu-Han Hsu #####################################...
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#!/bin/bash # Copyright 2020-2021 Huawei Technologies Co., Ltd # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable...
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#!/bin/bash # Copyright 2022 Huawei Technologies Co., Ltd # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law ...
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#!/bin/bash interrupt_handler() { condor_rm -all rm -f $jobdesc exit 3 } logfile="/share/work/$USER/log/condor.log" while [ $# -gt 1 ] do case "$1" in -log) logfile=$2; shift; shift;; -f) script=$2; shift; shift;; -J) njobs=$2; shift; shift;; -*) echo "unknown $1 option " exit 1;; *) break...
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#!/bin/bash # Copyright 2022 Huawei Technologies Co., Ltd # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law ...
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#!/bin/bash #45 species for PAML prank -d=/data/share/htp/TRNP1/paper_data/protein/fastas/TRNP1_coding_seqs_45species_forPAML_longer.fa \ -t=/data/share/htp/TRNP1/paper_data/protein/trees/tree_TRNP1_coding_45sp_forPAML.txt \ -o=/data/share/htp/TRNP1/paper_data/protein/fastas/prank_output/prank_TRNP1_coding_45species_f...
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#!/usr/bin/env bash # Step 7 — build LibCarla with ROS 2 and run the LibCarla test suite, which is # what actually validates a new message type: test_type_hash.cpp checks every # registered hash for the RIHS01_<64 hex> format and for uniqueness across types. # # Usage: # bash verify.sh # make LibCarla AR...
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Shell
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#!/bin/bash #SBATCH --job-name=metric #SBATCH --time=24:00:00 #SBATCH --nodes=1 #SBATCH --ntasks=1 #SBATCH --cpus-per-task=2 #SBATCH --mem-per-cpu=2gb #SBATCH --account=iacc_nbc #SBATCH --qos=pq_nbc #SBATCH --partition=IB_16C_96G # Outputs ---------------------------------- #SBATCH --output=/home/data/abcd/abcd-hispani...
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#!/usr/bin/env bash # Copyright 2022 Huawei Technologies Co., Ltd # # Licensed under the Apache License, Version 3.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applic...
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#!/bin/bash set -e # pretraining data echo "Test: Generate data for pretraining the fragment-based graph transformer..." python -m drugex.dataset \ ${DATASET_COMMON_ARGS} \ -i ${TEST_DATA_PRETRAINING} \ -o ${PRETRAINING_PREFIX} \ -mt graph ${DATASET_FRAGMENT_ARGS} echo "Test: Done." # finetuning data echo "Test: Gen...
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#!/bin/bash # Copyright 2020 Huawei Technologies Co., Ltd # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law ...
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#This script is not really supposed to be run directly #Instead, it should be sourced from the decoding script #It makes many assumption on existence of certain environmental #variables as well as certain directory structure. if [ "${dataset_type}" != "supervised" ] ; then mandatory_variables="my_data_dir my_data_lis...
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#This script is not really supposed to be run directly #Instead, it should be sourced from the decoding script #It makes many assumption on existence of certain environmental #variables as well as certain directory structure. if [ "${dataset_type}" != "supervised" ] ; then mandatory_variables="my_data_dir my_data_li...
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Shell
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#!/usr/bin/env bash # Copyright 2012 Johns Hopkins University (Author: Guoguo Chen) # Apache 2.0. # Begin configuration section. cmd=run.pl duptime=0.5 model=final.mdl # End configuration section. echo "$0 $@" # Print the command line for logging [ -f ./path.sh ] && . ./path.sh; # source the path. . parse_options...
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#!/bin/bash # Copyright 2021 Huawei Technologies Co., Ltd # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law ...
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#!/bin/bash # Copyright 2022 Huawei Technologies Co., Ltd # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law ...
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#!/bin/bash # Copyright 2022 Huawei Technologies Co., Ltd # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law ...
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#!/bin/bash # # Copyright 2020 The Kubeflow Authors # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law o...
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#!/bin/bash # Copyright 2022 Huawei Technologies Co., Ltd # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law ...
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#!/usr/bin/env bash # Copyright 2012 Johns Hopkins University (Author: Guoguo Chen) # Apache 2.0. # Begin configuration section. cmd=run.pl duptime=0.5 model=final.mdl # End configuration section. echo "$0 $@" # Print the command line for logging [ -f ./path.sh ] && . ./path.sh; # source the path. . parse_optio...
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# you can change cmd.sh depending on what type of queue you are using. # If you have no queueing system and want to run on a local machine, you # can change all instances 'queue.pl' to run.pl (but be careful and run # commands one by one: most recipes will exhaust the memory on your # machine). queue.pl works with Gri...
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#!/usr/bin/env bash # Copyright 2015, Brno University of Technology (Author: Karel Vesely) # Copyright 2014, University of Edinburgh (Author: Pawel Swietojanski), 2014, Apache 2.0 if [ $# -ne 1 ]; then echo "Usage: $0 <ami-dir>" echo " <ami-dir> is download space." exit 1; fi set -eux dir=$1 mkdir -p $dir ec...
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#!/bin/bash mkdir -p NC_mriqc_0.15.2 mkdir -p NC_mriqc_work rm -r NC_mriqc_0.15.2/* rm -r NC_mriqc_work/* echo "" > NC_mriqc.log echo "Start NC 35 participants QC..." unset PYTHONPATH singularity run -B $HOME:/home/mriqc --home /home/mriqc --cleanenv \ -B ${HOME}/project/NC_BIDS:/data:ro \ -B ${HOME}/pr...
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#!/bin/bash # Copyright 2022 Huawei Technologies Co., Ltd # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law ...
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#!/bin/bash # Copyright 2022 Huawei Technologies Co., Ltd # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law ...
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#!/bin/bash # Copyright 2022 Huawei Technologies Co., Ltd # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law ...
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#!/bin/bash #define file locations workdir=~/COEVOL/later_batch tree_loc=~/COEVOL/trees/tree_30sp_for_coevol.txt pheno_loc=~/COEVOL/pheno_coevol coevol_output_loc=$workdir/results_biohpc_good_curated #list of leftover proteins declare -a arr=("GI" "body_mass_brain_mass_GI") declare -a arr_run=(1 2 3) cd $workdir/c...
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#!/usr/bin/env bash # Copyright (c) 2015, Johns Hopkins University ( Yenda Trmal <jtrmal@gmail.com> ) # License: Apache 2.0 # Begin configuration section. # End configuration section set -o nounset # Treat unset variables as an error if [ ! -x results ] ; then data=$(utils/make_absolu...
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#!/usr/bin/env bash # Copyright 2014 Vassil Panayotov # Apache 2.0 # Prepares the test time language model(G) transducers # (adapted from wsj/s5/local/wsj_format_data.sh) . ./path.sh || exit 1; # begin configuration section src_dir=data/lang # end configuration section . utils/parse_options.sh || exit 1; set -e ...
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#!/usr/bin/env bash # Copyright 2015-2016 Sarah Flora Juan # Copyright 2016 Johns Hopkins University (Author: Yenda Trmal) # Copyright 2018 Yuan-Fu Liao, National Taipei University of Technology # Apache 2.0 source_dir=NER-Trs-Vol1/Language dict_dir=data/local/dict rm -rf $dict_dir mkdir -p $dict_dir # # # rm -f $...
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#!/usr/bin/env bash # Copyright 2016 Allen Guo # Copyright 2014 Johns Hopkins University (author: Daniel Povey) # Apache 2.0 remove_archive=false if [ "$1" == --remove-archive ]; then remove_archive=true shift fi if [ $# -ne 2 ]; then echo "Usage: $0 [--remove-archive] <data-base> <url-base>" echo "With -...
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#!/bin/bash # Copyright 2022 Huawei Technologies Co., Ltd # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law ...
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#!/bin/bash #SBATCH --gres=gpu:1 #SBATCH --mem=128G #SBATCH --cpus-per-task=8 #SBATCH --time=6-24:00:00 #SBATCH --mail-user=email@email.com #SBATCH --mail-type=ALL #SBATCH --output=/localscratch/authorid/log/train_model/s10_%A.out #SBATCH --job-name s10 #SBATCH --partition=long newgrp cs-labname module load LANG/PYTH...
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#!/bin/bash # usage: make_videos.sh RUN_DIR FPS (expects RUN_DIR/frames/{neural,naive,comp,harm}_NNNN.png) set -e R=$1; FPS=${2:-20}; F=$R/frames ffmpeg -y -loglevel error -framerate $FPS -i $F/harm_%04d.png -c:v libx264 -pix_fmt yuv420p -crf 18 $R/hybrid_final.mp4 ffmpeg -y -loglevel error -framerate $FPS -i $F/neur...
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#!/bin/bash # Copyright 2021 Huawei Technologies Co., Ltd # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law ...
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#!/usr/bin/env bash # Copyright 2012 Vassil Panayotov # 2017 Ewald Enzinger # 2019 Dongji Gao # Apache 2.0 . ./path.sh || exit 1 echo "=== Building a language model ..." dir=data/local/lm/ text=data/train/text lexicon=data/local/dict/lexicon.txt # Language model order order=6 . utils/parse_o...
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#!/usr/bin/env bash # Copyright 2012 Johns Hopkins University (Author: Daniel Povey) # Apache 2.0 [ -f ./path.sh ] && . ./path.sh cmd=run.pl min_lmwt=5 max_lmwt=17 #end configuration section. [ -f ./path.sh ] && . ./path.sh . parse_options.sh || exit 1; if [ $# -ne 3 ]; then echo "Usage: local/score.sh [--cmd (r...
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#This script is not really supposed to be run directly #Instead, it should be sourced from the decoding script #It makes many assumption on existence of certain environmental #variables as well as certain directory structure. eval my_data_cmudb=\$${dataset_type}_data_cmudb if [ "${dataset_kind}" != "supervised" ] ; t...
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#!/usr/bin/env bash # Read-only prerequisite checks for audit-carla-docs. # Exits non-zero only on hard blockers: no checkout, or no python3. set -uo pipefail cd "$(dirname "${BASH_SOURCE[0]}")" || exit 1 # shellcheck source=env.sh source ./env.sh fails=0 pass() { echo "PASS $*"; } warn() { echo "WARN $*"; } fail() ...
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#This script is not really supposed to be run directly #Instead, it should be sourced from the decoding script #It makes many assumption on existence of certain environmental #variables as well as certain directory structure. eval my_data_cmudb=\$${dataset_type}_data_cmudb if [ "${dataset_kind}" != "supervised" ] ; ...
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#!/bin/bash # Copyright 2021 Huawei Technologies Co., Ltd # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law ...
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#!/bin/bash # Copyright(C) 2022 Huawei Technologies Co., Ltd # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable ...
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#!/bin/bash # Copyright 2020 Huawei Technologies Co., Ltd # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law ...
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#!/bin/bash set -e echo "Test: Generate data for pretraining the fragment-based sequence models..." python -m drugex.dataset \ ${DATASET_COMMON_ARGS} \ -i ${TEST_DATA_PRETRAINING} \ -o ${PRETRAINING_PREFIX} \ -mt smiles \ ${DATASET_FRAGMENT_ARGS} echo "Test: Done." echo "Test: Generate data for pretraining the fragm...
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#!/usr/bin/env bash # CUDA_PATH=/usr/local/cuda/ export CUDA_PATH=/usr/local/cuda/ #You may also want to ad the following #export C_INCLUDE_PATH=/opt/cuda/include export CXXFLAGS="-std=c++11" export CFLAGS="-std=c99" python setup.py build_ext --inplace rm -rf build CUDA_ARCH="-gencode arch=compute_30,code=sm_30 \ ...
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#!/usr/bin/env bash # Copyright 2014 QCRI (author: Ahmed Ali) # Copyright 2016 Johns Hopkins Univeersity (author: Jan "Yenda" Trmal) # Apache 2.0 echo $0 "$@" galeData=$(utils/make_absolute.sh "${@: -1}" ); wavedir=$galeData/wav mkdir -p $wavedir length=$(($#-1)) args=${@:1:$length} # check that sox is installed...
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#!/bin/bash # Copyright 2020 Huawei Technologies Co., Ltd # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law...
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#!/bin/bash # Copyright 2021 Huawei Technologies Co., Ltd # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law...
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#!/bin/bash # Copyright 2021 Huawei Technologies Co., Ltd # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law ...
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#!/usr/bin/env bash # this script is used for comparing decoding results between systems. # e.g. local/chain/compare_wer_general.sh exp/chain/tdnn_7b exp/chain/tdnn_lstm_1a echo "# $0 $*"; # print command line. echo -n "# System " for x in $*; do printf " % 20s" $x; done echo echo -n "# WE...
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#!/usr/bin/env bash # Copyright Johns Hopkins University (Author: Daniel Povey) 2012. Apache 2.0. orig_args= for x in "$@"; do orig_args="$orig_args '$x'"; done # begin configuration section. we include all the options that score_sclite.sh or # score_basic.sh might need, or parse_options.sh will die. # CAUTION: the...
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#!/bin/bash # Copyright 2022 Huawei Technologies Co., Ltd # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law ...
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#!/bin/bash pwd; hostname; date set -e #==============Shell script==============# #Load the software needed module load singularity-3.5.3 DSET_DIR="/home/data/abcd/abcd-hispanic-via" BIDS_DIR="/home/data/abcd/abcd-hispanic-via/raw/dset" CODE_DIR="/home/data/abcd/code/abcd_fmriprep-analysis" LOG_DIR="${DSET_DIR}/code...
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#!/bin/bash # Copyright 2021 Huawei Technologies Co., Ltd # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law ...
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#!/bin/bash # Copyright 2022 Huawei Technologies Co., Ltd # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law ...
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#!/bin/bash # Copyright 2021 Huawei Technologies Co., Ltd # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law ...
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#!/bin/bash # Copyright 2021 Huawei Technologies Co., Ltd # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law ...
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#!/bin/bash #SBATCH --job-name=completion #SBATCH --time=24:00:00 #SBATCH --nodes=1 #SBATCH --ntasks=1 #SBATCH --cpus-per-task=2 #SBATCH --mem-per-cpu=2gb #SBATCH --account=iacc_nbc #SBATCH --qos=pq_nbc #SBATCH --partition=IB_16C_96G # Outputs ---------------------------------- #SBATCH --output=/home/data/abcd/abcd-his...
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#!/bin/bash mkdir -p ET_mriqc_0.15.2 mkdir -p ET_mriqc_work rm -r ET_mriqc_0.15.2/* rm -r ET_mriqc_work/* echo "" > ET_mriqc.log unset PYTHONPATH singularity run -B $HOME:/home/mriqc --home /home/mriqc --cleanenv \ -B ${HOME}/project/ET_BIDS:/data:ro \ -B ${HOME}/project/ET_mriqc_0.15.2:/out \ -...
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#!/usr/bin/env bash . conf/common_vars.sh . ./lang.conf set -e set -o pipefail set -u # Wait for cross-entropy training. echo "Waiting till exp/tri6_nnet/.done exists...." while [ ! -f exp/tri6_nnet/.done ]; do sleep 30; done echo "...done waiting for exp/tri6_nnet/.done" # Generate denominator lattices. if [ ! -f ...
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#!/bin/bash # Copyright 2022 Huawei Technologies Co., Ltd # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law ...
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#!/usr/bin/env bash # Copyright 2010-2011 Microsoft Corporation # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # THIS CODE IS PROVIDED *AS IS...
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#!/usr/bin/env bash # Prerequisites for document-carla-feature. PASS / WARN / FAIL per check; # exits non-zero only when the skill cannot run at all. set -u cd "$(dirname "${BASH_SOURCE[0]}")" || exit 1 # shellcheck source=env.sh . ./env.sh fail=0 say() { printf '%-5s %s\n' "$1" "$2"; } if [ -n "${CARLA_ROOT:-}" ] &&...
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#!/bin/bash LOG_DIR=/groups/umcg-biogen/tmp03/output/2019-11-06-FreezeTwoDotOne/2020-03-12-deconvolution/jobs/output/ JOB_PREFIX=$1 START=$2 END=$3 TOTAL_DONE=0 TOTAL_EQTLS=0 echo -e "JOBNAME\tJOBID\tNODE\tELAPSED\tERRORS\tEQTLS_DONE\tN_EQTLS\tPROGRESS\tPANIC\tFINISHED" for I in $(seq $START $END); do JOBNAME="${JO...
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#!/usr/bin/env bash if [ $# != 2 ]; then echo "Usage: $0 <data-dir> <num-to-split>" echo "E.g.: $0 data/train_cifar10 5" echo "This script creates split-up versions of images.scp and labels.txt in" echo "(in the example) data/train_cifar10/split5/{1,2,3,4,5}/{images.scp,labels.txt}." exit 1 fi data=$1 num...
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#!/bin/bash # Copyright 2021 Huawei Technologies Co., Ltd # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law...
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#!/bin/bash # Copyright 2022 Huawei Technologies Co., Ltd # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law ...
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#!/bin/bash # Copyright 2022 Huawei Technologies Co., Ltd # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law ...
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#!/bin/sh export PATH=/Applications/MATLAB_R2021b.app/bin:$PATH echo "Enter filename with fluorescence calcium transients (without '.txt'): " echo "[Make sure each row corresponds to one neuron]" echo "For example data, use 'example.txt' for hindbrain, and 'example_mt.txt' for motoneuron." read filename echo "File na...
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#!/bin/bash #SBATCH --job-name=REPLACENAME #SBATCH --output=REPLACENAME.out #SBATCH --error=REPLACENAME.err #SBATCH --time=23:59:59 #SBATCH --mem REPLACEMEMb #SBATCH --nodes 1 #SBATCH --qos=REPLACEQOS ml Java set -e set -u mkdir -p $(dirname REPLACEOUT) remove=false if [ ! -f REPLACEEIGENVECTORS ] && [ -f REPLACEE...
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#!/bin/bash set -e echo "Test: Generate data for pretraining the fragment-based sequence models..." python -m drugex.dataset \ ${DATASET_COMMON_ARGS} \ -i ${TEST_DATA_PRETRAINING} \ -o ${PRETRAINING_PREFIX} \ -mt smiles \ ${DATASET_FRAGMENT_ARGS} echo "Test: Done." echo "Test: Generate data for pretraining the fragm...
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Shell
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#!/bin/bash #SBATCH --gres=gpu:1 #SBATCH --mem=64G #SBATCH --cpus-per-task=8 #SBATCH --time=3:00:00 #SBATCH --mail-user=email@email.com #SBATCH --mail-type=ALL #SBATCH --output=/localscratch/authorid/log/s10_hm_fold_1/%x_%N_%j.out #SBATCH --error=/localscratch/authorid/log/s10_hm_fold_1/%x_%N_%j.err #SBATCH --job-name ...
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Shell
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#!/usr/bin/env bash # Copyright 2020 Huawei Technologies Co., Ltd # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applica...
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#!/bin/bash # Copyright 2022 Huawei Technologies Co., Ltd # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law ...
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#!/bin/bash JOB_PREFIX=$1 START=$2 END=$3 LOG_DIR=/groups/umcg-biogen/tmp03/output/2019-11-06-FreezeTwoDotOne/2020-10-12-deconvolution_gav/jobs/$JOB_PREFIX/output/ TOTAL_DONE=0 TOTAL_EQTLS=0 echo -e "JOBNAME\tJOBID\tNODE\tELAPSED\tERRORS\tEQTLS_DONE\tN_EQTLS\tPROGRESS\tPANIC\tFINISHED" for I in $(seq $START $END); ...
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#!/bin/bash # script that creates an archive in current folder # containing the heap and thread dump and the current log file JAVA_HEAPDUMP_PATH="/tmp/java_*.hprof" STAMP=`date +%Y-%m-%d-%H%M` jibri_USER="jibri" jibri_UID=`id -u $jibri_USER` RUNNING="" unset PID #Find any crashes in /var/crash from our user in the p...
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#!/usr/bin/env bash # Step 02 — prepare the CARLA Python client env. Manager-agnostic: this does NOT # create an env. Activate one first (see SKILL.md), then this installs the client # build deps into it. # # Why an env with a compatible interpreter matters: system python on recent # distros may be too new for CARLA's ...
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Shell
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stage=0 train_stage=-10 mic=ihm affix=bidirectional common_egs_dir= remove_egs=true use_ihm_ali=false use_sat_alignments=true # BLSTM params cell_dim=512 rp_dim=128 nrp_dim=128 chunk_left_context=40 chunk_right_context=40 # training options num_jobs_initial=2 num_jobs_final=12 samples_per_iter=20000 realign_times= ec...
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# you can change cmd.sh depending on what type of queue you are using. # If you have no queueing system and want to run on a local machine, you # can change all instances 'queue.pl' to run.pl (but be careful and run # commands one by one: most recipes will exhaust the memory on your # machine). queue.pl works with Gri...
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Shell
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#!/bin/bash # Copyright 2021 Huawei Technologies Co., Ltd # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law...
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Shell
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#!/bin/bash # Copyright 2022 Huawei Technologies Co., Ltd # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law ...
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#!/bin/bash # Copyright 2022 Huawei Technologies Co., Ltd # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law ...
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Shell
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#!/bin/bash # Copyright 2020-2021 Huawei Technologies Co., Ltd # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable...
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#!/bin/bash # Copyright 2022 Huawei Technologies Co., Ltd # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law...
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Shell
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#!/bin/bash # Copyright 2021 Huawei Technologies Co., Ltd # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law ...
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#!/bin/bash # terminate script die() { echo "$1" >&2 echo exit 1 } test(){ testdir=$1 echo "Test for $testdir" if [ $testdir = test/chr22_meth_example ]; then cat $testdir/meth.exp > $testdir/meth.txt else echo -e "chromosome\tstart\tend\tread_name\tlog_lik_ratio\tlog_lik_methylated\...
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#!/bin/bash # Copyright 2020 Huawei Technologies Co., Ltd # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law ...