sha256 stringlengths 64 64 | language stringclasses 28
values | size int32 1 491k | lines int32 1 23.2k | content stringlengths 1 200k |
|---|---|---|---|---|
6b17fe25b024398b46024673730bbb55ffefa8c690004874503ff27a92cbfc88 | Shell | 2,814 | 78 | #!/bin/bash
# Copyright 2020 Huawei Technologies Co., Ltd
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law ... |
b0ee2247ee1ee214936da006eb331c9f7e4ea304a2cea2963f41785afc08d240 | Shell | 2,817 | 85 | #!/usr/bin/env bash
# Copyright 2012 Vassil Panayotov
# 2017 Ewald Enzinger
# Apache 2.0
# Adapted from egs/voxforge/s5/local/voxforge_prepare_dict.sh (commit acb5439bf97a39398d5eeb926a2a5cfa71b5f72a)
. path.sh || exit 1
locdata=data/local
locdict=$locdata/dict
echo "=== Preparing the dictionary ..."... |
42198700d80965b3ce58ea2a2306d859659d0eb2f7a156e6baf69a0fea417d46 | Shell | 2,818 | 104 | #!/usr/bin/env bash
# shellcheck source=./utils.sh
source $(dirname "$0")/utils.sh
# Check if there is input
[[ ( $# -eq 0 ) ]] && displayhelp $0 1
# Preparing the default values for variables
overwrite=no
scriptdir="$( cd -- "$(dirname "$0")" >/dev/null 2>&1 ; pwd -P )"
stdpath=${scriptdir}/90.template
mmres=no
tas... |
66287b61be3b868d6260e93e91eb71fb8ab42fb66ffb2b7e7d9f93864e6a56b7 | Shell | 2,820 | 78 | #!/bin/bash
# Copyright 2020 Huawei Technologies Co., Ltd
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law ... |
455e4f4d90c4f02a4c7181619fb3c8750d3746bc2ff91e9506b524862b1bd5f6 | Shell | 2,821 | 65 | #! /usr/bin/env bash
# Build the carla-cosmos image.
#
# ./build_image.sh --nano|--full [--tag carla-cosmos:nano] [--hf-cache ~/.cache/huggingface]
# [--hf-token-file ~/.hf_token] [--no-models] [--push] [--platform linux/amd64]
#
# --hf-cache reuse weights from a local Hugging Face cache (HF... |
4d2841e4113683f8e1d0d4804737a4163be32d947cd368d338d9b02346c87039 | Shell | 2,824 | 76 | #!/bin/bash -u
# Copyright 2015 (c) Johns Hopkins University (Jan Trmal <jtrmal@gmail.com>)
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
#... |
9047c26e0e59131e10064212665a83841e75881a4befbc0ed01a1f7f35f05c9c | Shell | 2,824 | 80 | #!/bin/sh
# Control number of threads used for numpy parallelism.
export MKL_NUM_THREADS=2
export NUMEXPR_NUM_THREADS=2
export OMP_NUM_THREADS=2
SERMODS_ROOM_TEMP=$DATA_PATH/models/5HT/5HT_AugmentedGIFs.lmod
SERMODS_HEATED=$DATA_PATH/models/5HT_heated/5HT_AugmentedGIFs.lmod
REPEATS=20
PROCESSES=10
# Generate GIFnet ... |
08592f799200ce2b33cddafa9fdbc6944dcd8f3e57a68c3d10680e217e75f6c2 | Shell | 2,825 | 104 | #!/bin/bash
# Copyright 2021 Huawei Technologies Co., Ltd
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law ... |
e62a73d07ac7258f9bc9281cfef051879ddff0e8a89bea0d8076dba0d4730d73 | Shell | 2,825 | 95 | #!/bin/bash
# Copyright 2020 Huawei Technologies Co., Ltd
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law ... |
a14a7188e58c717bcad20fb72463a754b934cd6e34b90fe4e6a208edc0d9d132 | Shell | 2,826 | 100 | #!/usr/bin/env bash
# shellcheck source=../utils.sh
source $( cd -- "$(dirname "$0")" >/dev/null 2>&1 ; pwd -P )/../utils.sh
# Check if there is input
[[ ( $# -eq 0 ) ]] && displayhelp $0 1
### print input
printline=$( basename -- $0 )
echo "${printline}" "$@"
# Parsing required and optional variables with flags
# A... |
7de2063b8277421e1123fc5ca867f7a78cd44f2a260ad2c4ad45fb02687cd6e5 | Shell | 2,831 | 115 | #!/usr/bin/env bash
# Copyright 2021 Behavox (Author: Hossein Hadian).
# Apache 2.0.
# Run an ASR pipeline from the GMM training stage up to the chain model training.
# Expects the data/lang to be prepared already. Specifially, these should
# exist before running this script:
# -- data/$train_set
# -- data/lang_nosp... |
2054edd7a71b5ea43961492603938b94926746b887002124dfbf0dd4007a8798 | Shell | 2,833 | 110 | #!/bin/bash
# Copyright 2020-2021 Huawei Technologies Co., Ltd
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable... |
9e82c7ce0dec8155168a091c1bcbbf84b64ad2309b3111e9ae13cc401e4513d1 | Shell | 2,835 | 88 | #!/bin/bash
# Copyright 2021 Huawei Technologies Co., Ltd
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law ... |
e214f57f2ff5777c49445d187aee7f6cd9c310695ddff48f3479d54a5fd35aa2 | Shell | 2,836 | 79 | #!/usr/bin/env bash
# Kaldi ASR baseline for the 3rd CHiME Challenge
#
# Copyright 2015 University of Sheffield (Jon Barker, Ricard Marxer)
# Inria (Emmanuel Vincent)
# Mitsubishi Electric Research Labs (Shinji Watanabe)
# Apache 2.0 (http://www.apache.org/licenses/LICENSE-2.0)
. ./pat... |
896f7b071b71523748d448d0cdae34280ec0d672eb8833c97064591e20a292e5 | Shell | 2,844 | 101 | #!/bin/bash
# Copyright 2021 Huawei Technologies Co., Ltd
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law ... |
452f6c76e6f121a0dc07d304526a2aa3512d02ff74aca4aebae37b31c0e00627 | Shell | 2,846 | 96 | #!/bin/bash
# 2016 Modified by Takafumi Moriya at Tokyo Institute of Technology
# for Japanese speech recognition using CSJ.
# Copyright 2013 Arnab Ghoshal
# Johns Hopkins University (author: Daniel Povey)
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file... |
ce02bb1dc4dab7ba7bb7d7d7218974004c4fbddf1005bc68898aebbe3b744f4d | Shell | 2,847 | 54 | #!/usr/bin/env bash
# Step 07 — end-to-end verification against the FROM-SOURCE build.
#
# This skill builds source artifacts, not a Dist/ package, so verification runs
# the UNCOOKED server directly ([[run-carla-server]], `UE4Editor -game -nullrhi`)
# rather than a cooked CarlaUE4.sh. It boots that server, waits for t... |
9807946c172809e86e75bdb9821fbd0b02e9cd86d14250f6f52d26b4811a258c | Shell | 2,854 | 85 | #!/usr/bin/env bash
# Copyright 2015 Mitsubishi Electric Research Laboratories (Author: Shinji Watanabe)
# Apache 2.0.
set -e
# Config:
eval_flag=true # make it true when the evaluation data are released
. utils/parse_options.sh || exit 1;
if [ $# -ne 3 ]; then
printf "\nUSAGE: %s <training experiment direct... |
806f9d0a152c55be2d249d5f266eba9d1fc94c92178a8c5147cb8ea1ed63b967 | Shell | 2,864 | 96 | #!/usr/bin/env bash
# Copyright Johns Hopkins University (Author: Daniel Povey) 2012. Apache 2.0.
# begin configuration section.
cmd=run.pl
stage=0
decode_mbr=true
beam=5
word_ins_penalty=0.5
min_lmwt=7
max_lmwt=17
model=
#end configuration section.
#debugging stuff
echo $0 $@
[ -f ./path.sh ] && . ./path.sh
[ -f ... |
8f6f2bd6a24117a5d178c097baea737caf47b7002a8cabd8a0b02a96fd84923f | Shell | 2,867 | 70 | #!/bin/bash
export LC_ALL=C
if [ $# -ne 5 ]; then
echo "Usage: recipes/02_preprocess_text.sh <transcript_list> <lid_model> <mptable> <recipe>"
echo " <corpus_dir>"
echo "e.g.: $0 transcripts.list recipes/lid.176.bin generated/mp-table.csv"
echo " recipes/parl_t... |
af66a9d11bf65ff4fe1e7ce2f695ba927e02e9328e2ee7a17cb5b70413f12137 | Shell | 2,867 | 83 | #This script is not really supposed to be run directly
#Instead, it should be sourced from the decoding script
#It makes many assumption on existence of certain environmental
#variables as well as certain directory structure.
if [ ${dataset_type} != "supervised" ] ; then
mandatory_variables="my_data_dir my_data_list ... |
0fba615b8f14c19fe4db0200863d32527dfb610fe959ec1d10c4baed03c2a6a7 | Shell | 2,870 | 86 | #!/usr/bin/env bash
#
# Apache 2.0.
# This script applies sliding window CMVN and writes the features to disk.
#
# Although this kind of script isn't necessary in speaker recognition recipes,
# it can be helpful in the diarization recipes. The script
# diarization/nnet3/xvector/extract_xvectors.sh extracts x-vectors ... |
9648836e2405ff1f3b80b2ac951b49260214bd95092df3db230e8236de7e7391 | Shell | 2,870 | 83 | #This script is not really supposed to be run directly
#Instead, it should be sourced from the decoding script
#It makes many assumption on existence of certain environmental
#variables as well as certain directory structure.
if [ ${dataset_type} != "supervised" ] ; then
mandatory_variables="my_data_dir my_data_list... |
4ba41831e3512ee7e8e0b4d1187fb2d502e8ac2a6163afbed83833a83fed18a0 | Shell | 2,877 | 101 | #!/bin/bash
# Copyright 2020 Huawei Technologies Co., Ltd
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law ... |
68cf89a653b1df8a6e7e48eebfd6b8842848f489dfec99e1178146a934d54055 | Shell | 2,879 | 86 | #!/usr/bin/env bash
#
# Apache 2.0.
# This script applies sliding window CMVN and writes the features to disk.
#
# Although this kind of script isn't necessary in speaker recognition recipes,
# it can be helpful in the diarization recipes. The script
# diarization/nnet3/xvector/extract_xvectors.sh extracts x-vectors ... |
1cb7ecabe7b01f246b19c7026d7bf8db23234887e6cdd3628d4db4e16616d8d9 | Shell | 2,880 | 80 | #!/bin/bash
# Copyright 2022 Huawei Technologies Co., Ltd
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law ... |
300267166148016b08f7f921fa0549bbf2510f7b5204e59c063aa6a36df9a8ba | Shell | 2,881 | 114 | #!/usr/bin/env bash
# Copyright 2012 Arnab Ghoshal
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# THIS CODE IS PROVIDED *AS IS* BASIS, WI... |
cdb9185dc324ca6b0f4e8195064a9b9461828ea98d21316f4b779b22e1655a77 | Shell | 2,881 | 70 | #!/bin/bash
export LC_ALL=C
if [ $# -ne 3 ]; then
echo "Usage: recipes/05_create_final_kaldi_files.sh <input_dir> <output_dir> <corpus_dir>"
echo "e.g.: $0 generated/autumn2020 final_outputs/fi-parl-autumn2020 path/to/corpus"
echo
echo "This script creates combined Kaldi files for all session Kaldi f... |
f419f02e9e4a33ce1ebe94c4e39a27fe215016dd0d7648f2dd465c9bed54326a | Shell | 2,884 | 86 | #!/usr/bin/env bash
# Copyright 2014 Pegah Ghahremani
# 2014 Johns Hopkins (Yenda Trmal)
# Apache 2.0
# This is really an alternative path to the BNF-SGMM,
# where we train a DNN instead of an SGMM.
. conf/common_vars.sh
. ./lang.conf
[ -f local.conf ] && . ./local.conf
set -e
set -o pipefail
set -u
... |
ffd72a42b96f46dee3a8ed6628751d74baface017f575d9d3413bc06d82198d2 | Shell | 2,884 | 85 | #!/usr/bin/env bash
# Copyright Johns Hopkins University (Author: Daniel Povey) 2012. Apache 2.0.
# Modified by Takafumi Moriya for Japanese speech recognition using CSJ.
# This script is for scoring with morpheme.
# begin configuration section.
cmd=run.pl
min_lmwt=5
max_lmwt=17
#end configuration section.
[ -f ./p... |
47f7d784231b6a578ef55a14c32d196991feea0b2c84b84e62ddcfaa1f472bfc | Shell | 2,887 | 74 | #!/usr/bin/env bash
# Copyright 2019 Ashish Arora, Vimal Manohar
# Apache 2.0.
# This script takes an rttm file, and performs decoding on on a test directory.
# The output directory contains a text file which can be used for scoring.
stage=0
nj=8
cmd=queue.pl
echo "$0 $@" # Print the command line for logging
if ... |
b11d7fe7e477a923ea22162922a24f61a1215c010ef181e447a07171dc8f12ac | Shell | 2,889 | 111 | #!/bin/bash
# Copyright 2021 Huawei Technologies Co., Ltd
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law ... |
945eacad019c6a18c7e6a2c2b463cce3a790edcbda8f6c9e5d85349aa1ed5176 | Shell | 2,892 | 61 | #!/usr/bin/env bash
# Self-contained environment for the install-python-api skill.
# Source before the other scripts: source env.sh
#
# This skill installs the CARLA *client* (the `carla` python package) into an
# interpreter. It never touches the simulator.
#
# PYTHON interpreter to install INTO. Defa... |
4370383a40a9acf7a54b339ede035607bf2d48deb5d01bae3c5ebb87f25aaa03 | Shell | 2,895 | 106 | #!/bin/bash
# Copyright 2020-2021 Huawei Technologies Co., Ltd
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable... |
db2c8aa50ce70be513235e382c8161bb9d9485156793d7c2afa2afefeb96896a | Shell | 2,903 | 91 | #!/bin/bash
# model selection scripts keep the same structure for every software
# ARGS: input_msa output_dir restore_ckp skip_eval data_type
# restore_ckp = {true, false}
# skip_eval = {true, false}
# data_type = {nt, aa}
prottest_bin=bin/prottest/prottest-3.4.2.jar
PT_ARGS="-I -G -F -BIC -AIC ... |
e931c308171db580aebdd73fe31d37db76c9f309dd09955578b1f826bdbfea15 | Shell | 2,904 | 77 | #!/bin/bash
set -euxo pipefail
echo $PATH
sf_marker='GABAergic_markers_fc.txt,Glutamatergic_markers_fc.txt,Non.Neuronal_markers_fc.txt'
ta_marker='tasic2016_gaba.csv,tasic2016_glu.csv,tasic2016_gli.csv'
cu_marker='cusanovich2018_inh.txt,cusanovich2018_ext.txt,cusanovich2018_gli.txt'
tn_marker='tasic2018_gaba.txt,tasic2... |
78cf06b4f896012c43fe7fa410a4433fb815a2ffc3c7ab3c4d9586a4966b43c8 | Shell | 2,908 | 80 | #!/usr/bin/env bash
# Copyright 2012-2013 Johns Hopkins University (Author: Guoguo Chen, Yenda Trmal)
# Apache 2.0.
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/... |
1967e1f40148d7da93a2d79228996613392c2afe1312bc2c7d38aeb2244ed050 | Shell | 2,923 | 88 | #!/usr/bin/env bash
. ./path.sh
#First get the list of unique words from our text file
if [ $# -lt 1 ]; then
echo 'Usage callhome_prepare_dict.sh lexicon'
exit 1;
fi
stage=0
dir=`pwd`/data/local/dict
datadir=`pwd`/data/local/data/train_all
mkdir -p $dir
local=`pwd`/local
utils=`pwd`/utils
tmpdir=`pwd`/data/loca... |
8d3c137f09c90c0c983eb0bf5cc8cc5fb386701ddbf4982d0943e6aa57a287fb | Shell | 2,924 | 109 | # Please note that we can make no guarantees regarding the use of this patch
# and provide no warranties, explicit or implied.
# It has been tested for pixman version 0.38 in Ubuntu 18.04 and 20.04
#
# Preparation:
# 1. ensure a deb-src source is uncommented
# sudo nano /etc/apt/sources.list
if grep -q ^deb-src /etc/ap... |
9c89c4d47752a37622dacbef1c1ccc0fc6001efe191f22bf096dd1d0ab363bf0 | Shell | 2,925 | 106 | #!/bin/bash
# Copyright 2020-2021 Huawei Technologies Co., Ltd
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable... |
86cca5db10f600a5e076c6df8a448a38c6973d906105a0bad9a92a6976594759 | Shell | 2,926 | 105 | #!/bin/bash
# Copyright 2020-2021 Huawei Technologies Co., Ltd
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable... |
aeceabb0f552e40f688c61635eaa901c8901cbec5ccf3cd3a20ac0f6a77be1e5 | Shell | 2,927 | 82 | #!/usr/bin/env bash
# this script has common stages shared across librispeech chain recipes.
# It generates a new topology in a new lang directory, gets the alignments as
# lattices, and builds a tree for the new topology
set -e
stage=11
# input directory names. These options are actually compulsory, and they have
#... |
72e4e53dd218e4602b824f112f7641cb3b61a32d2344919a528c52be1ac554f7 | Shell | 2,931 | 95 | #!/usr/bin/env bash
# this is an example to show a "tdnn" system in raw nnet configuration
# i.e. without a transition model
# It uses corrupted (reverberation + noise) speech as input and clean speech
# as output.
. ./cmd.sh
stage=0
affix=
train_stage=-10
common_egs_dir=
egs_opts=
num_data_reps=10
remove_egs=true... |
9dd891b3f981de9fc117a9a37b25a266e0d97e5a3f857714d12b533c11d533d2 | Shell | 2,940 | 115 | #!/bin/bash
# Copyright 2020-2021 Huawei Technologies Co., Ltd
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable... |
6bf426ee1e260fdc290da2eb9ad64a5249e406fcdc61eaa6f2c27dee5fbd8573 | Shell | 2,941 | 128 | #!/bin/bash
set -e
# pretraining data
echo $line
echo "Test: Generate data for pretraining the fragment-based graph transformer..."
echo $line
python -m drugex.dataset \
${DATASET_COMMON_ARGS} \
-i ${TEST_DATA_PRETRAINING} \
-o ${PRETRAINING_PREFIX} \
-mt graph ${DATASET_FRAGMENT_ARGS}
echo "Test: Done."
# finetunin... |
84bfceaa6bb7906c36d3686ea50b2e773ee8c25cd2b7563d704658ee0f822d00 | Shell | 2,944 | 86 | #!/usr/bin/env bash
# Copyright 2016 Johns Hopkins University (Author: Daniel Povey, Vijayaditya Peddinti)
# 2019 Vimal Manohar
# Apache 2.0.
# This script converts lattices available from a first pass decode into a per-frame weights file
# The ctms generated from the lattices are filtered. Silence frames a... |
becde4616abfd5a62ecbd86260d2973e78197b789fe453b469d5ee1db3203020 | Shell | 2,947 | 106 | #!/bin/bash
# Copyright 2021 Huawei Technologies Co., Ltd
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law ... |
b8ede09fbac3ff0f172670da6af082dcc2bb67a307eba7307a969dc75cf3164e | Shell | 2,948 | 72 | #!/bin/bash
set -euxo pipefail
GSE=GSE127257
sf_marker='GABAergic_markers_fc.txt,Glutamatergic_markers_fc.txt,Non.Neuronal_markers_fc.txt'
ta_marker='tasic2016_gaba.csv,tasic2016_glu.csv,tasic2016_gli.csv'
cu_marker='cusanovich2018_inh.txt,cusanovich2018_ext.txt,cusanovich2018_gli.txt'
tn_marker='tasic2018_gaba.txt,tas... |
3921be5d2ee4e07a97169328f3bda2943d21a0f664a5adcc6e4e3e8145f256e0 | Shell | 2,951 | 78 | dsname=$1
mkdir -p ./qcout/
# simple maf filter
plink --bfile $dsname --mind 0.1 --maf 0.01 \
--geno 0.05 \
--hwe 0.00001 \
--make-bed \
--out ./qcout/$dsname\-filterstep1
#read -p "Press enter to continue1"
# missingness
plink --bfile $dsname \
--missing \
--out ./qcout/$dsname
#read -p "Press enter to conti... |
f045ba4a5a341243eea90547e38994ea37def29138549dab230297ff86c6a760 | Shell | 2,952 | 111 | #!/bin/bash
# Copyright 2021 Huawei Technologies Co., Ltd
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law ... |
623a2f68c8ce106ee377bb2738ee3689997b5962e05cdd0153bebef394449f13 | Shell | 2,958 | 90 | #!/bin/bash
# model selection scripts keep the same structure for every software
# ARGS: input_msa output_dir restore_ckp skip_eval data_type
# restore_ckp = {true, false}
# skip_eval = {true, false}
# data_type = {nt, aa}
jmodeltest_bin=bin/jmodeltest/jModelTest.jar
JMT_ARGS="-i -g 4 -f -s 11 -... |
3ea8d37dab06c040460474784e00c20cb7d4bde9105b183e29cfee351f300682 | Shell | 2,963 | 111 | #!/usr/bin/env bash
# Copyright (c) 2015, Johns Hopkins University ( Yenda Trmal <jtrmal@gmail.com> )
# License: Apache 2.0
# Begin configuration section.
flen=0.01
segments=
utt_table=
# End configuration section
echo $0 "$@"
. ./utils/parse_options.sh || exit 1;
set -e -o pipefail
set -o nounset ... |
f0eade6b1be2450e47fc705338a92cba9adaa6d4f02249f49032aec8125acad1 | Shell | 2,969 | 81 | #!/usr/bin/env bash
# Copyright 2021 Behavox (author: Hossein Hadian)
# Apache 2.0
set -euo pipefail
# This script:
# 1. Perturbs the train data and prepares hires features for training.
# 2. Prepares hires features for the test sets.
# 3. Appends _sp and _sp_hires suffixes accordingly.
# Note: this script does no... |
260aa2e77ff398ba5e3893416bdeac9093bfa35d210cd051f63e628fba0764dd | Shell | 2,971 | 84 | #!/usr/bin/env bash
# 2016 Modified by Takafumi Moriya at Tokyo Institute of Technology
# for Japanese speech recognition using CSJ.
# Copyright 2015 Brno University of Technology (Author: Karel Vesely)
# Apache 2.0
# This example script trains a LSTM network on FBANK features.
# The LSTM code comes from Yiayu DU, ... |
1cbd6366a2e17a2e6474d3ea17e45ef6c87921fc671ddb782ac0a843876d8fae | Shell | 2,975 | 100 | #!/usr/bin/env bash
# Copyright 2015, Mitsubishi Electric Research Laboratories, MERL (Author: Shinji Watanabe)
. ./cmd.sh
. ./path.sh
# Config:
nj=10
cmd=run.pl
bmf="1 3 4 5 6"
eval_flag=true # make it true when the evaluation data are released
. utils/parse_options.sh || exit 1;
if [ $# != 2 ]; then
echo "Wro... |
a2bcba38845f41b7224b50955674d7bef9f88e19d4f8d454ce5257c51428a024 | Shell | 2,976 | 88 | #!/usr/bin/env bash
# started from tedlium recipe with few edits
set -e -o pipefail -u
# First the options that are passed through to run_ivector_common.sh
# (some of which are also used in this script directly).
stage=0
nj=30
decode_nj=30
min_seg_len=1.55
train_set=train
gmm=tri2b # this is the source gmm-dir for ... |
dbd840fa0f6db9d8359b57bcfe2be4a3ad88a9315c05c43efedcc42cf6c433a3 | Shell | 2,980 | 72 | #!/bin/bash -l
# Batch script to run a serial array job under SGE
# Request 20 minutes of wallclock time (format hours:minutes:seconds).
# one job ran on frontend was 2 min
#$ -l h_rt=1:00:0
# Request 1 gigabyte of RAM (must be an integer followed by M, G, or T)
# /usr/bin/time --verbose codeml gave Maximum resident... |
66740e62ada53379813fb5269ed33261ab4bf80aecd20f40c3a4cfb8abc5fd69 | Shell | 2,983 | 87 | #!/usr/bin/env bash
set -e -o pipefail
# this is called from the other nnet and chain training scripts.
# It prepares normal-resolution MFCC features for purposes of getting
# alignments and/or lattices on the speed-perturbed data.
# These will either be from the IHM data (with the --use-ihm-ali true option),
# or wi... |
0c212eb0f0ed8d2cf861feffa379b7abc0322bb1e826481a4cd542b85ff375bc | Shell | 2,987 | 98 | #!/usr/bin/env bash
# Copyright Johns Hopkins University (Author: Daniel Povey) 2012. Apache 2.0.
# begin configuration section.
cmd=run.pl
stage=0
decode_mbr=true
beam=5
word_ins_penalty=0.5
min_lmwt=7
max_lmwt=17
model=
#end configuration section.
#debugging stuff
echo $0 $@
[ -f ./path.sh ] && . ./path.sh
[ -f ... |
1c1c8bba85a5e2f1d73c9c91a529987eb184c2c02c87f1e3e023ae2f31e41793 | Shell | 2,988 | 85 | #!/usr/bin/env bash
# Copyright Johns Hopkins University (Author: Daniel Povey, Vijayaditya Peddinti) 2016. Apache 2.0.
# This script converts lattices available from a first pass decode into a per-frame weights file
# The ctms generated from the lattices are filtered. Silence frames are assigned a low weight (e.g.0.... |
817bc60d6da608c1471833906d60232ac6ece34efb5373ccd6946e6a0694b4e0 | Shell | 2,988 | 95 | #!/usr/bin/env bash
# Copyright 2014, University of Edinburgh (Author: Pawel Swietojanski)
# AMI Corpus training data preparation
# Apache 2.0
# To be run from one directory above this script.
. ./path.sh
#check existing directories
if [ $# != 1 ]; then
echo "Usage: ami_ihm_data_prep.sh /path/to/AMI"
exit 1;
... |
cc16138370e2837a4a94d33abeb1a98e86d50f1989a73f4e5a0a4ec44ab6c9b6 | Shell | 2,988 | 89 | #!/usr/bin/env bash
#
# Apache 2.0.
# This script applies sliding window CMVN and writes the features to disk.
#
# Although this kind of script isn't necessary in speaker recognition recipes,
# it can be helpful in the diarization recipes. The script
# diarization/nnet3/xvector/extract_xvectors.sh extracts x-vectors ... |
a7c2c0dcf10251c2b7706cd46f825d33976dfae2362bea96e6d6a10bed5ab689 | Shell | 2,990 | 83 | #!/usr/bin/env bash
# Copyright 2016-2018 David Snyder
# 2017-2018 Matthew Maciejewski
# Apache 2.0.
# This script is a modified version of diarization/score_plda.sh
# that replaces i-vectors with x-vectors.
#
# This script computes PLDA scores from pairs of x-vectors extracted
# from segments of a recor... |
c62359aa9363a98aa860c57f6453673a3abb7dd59e271f62a18cc14d712fa5d7 | Shell | 3,003 | 87 | #!/usr/bin/bash
set -euxo pipefail
GSE=GSE126074
sf_marker='GABAergic_markers_fc.txt,Glutamatergic_markers_fc.txt,Non.Neuronal_markers_fc.txt'
ta_marker='tasic2016_gaba.csv,tasic2016_glu.csv,tasic2016_gli.csv'
cu_marker='cusanovich2018_inh.txt,cusanovich2018_ext.txt,cusanovich2018_gli.txt'
tn_marker='tasic2018_gaba.tx... |
95e8e089799ff02b1c356b1c23b73b8cb99200fe0cab41f9053e1de1342d1065 | Shell | 3,008 | 83 | #!/usr/bin/env bash
# Copyright 2010-2012 Microsoft Corporation Johns Hopkins University (Author: Daniel Povey)
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/lic... |
37e99287d3e479bff312e70c0c1679b25fda3e31f9a9702eefcda551b5fe7565 | Shell | 3,009 | 83 | #!/usr/bin/env bash
# Copyright 2010-2012 Microsoft Corporation Johns Hopkins University (Author: Daniel Povey)
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/lic... |
555d1608402b8b05f512d2166c60b1acd058d5bd7bc5be7d6ced52cb056f3c3e | Shell | 3,009 | 104 | #!/usr/bin/env bash
# shellcheck source=../utils.sh
source $( cd -- "$(dirname "$0")" >/dev/null 2>&1 ; pwd -P )/../utils.sh
# Check if there is input
[[ ( $# -eq 0 ) ]] && displayhelp $0 1
# Preparing the default values for variables
mask=none
masksource_in=none
### print input
printline=$( basename -- $0 )
echo "... |
80ec02b578b9468011be04b973cb6286881b1e427a3b819e596c1c8de8d7a14e | Shell | 3,010 | 91 | #!/usr/bin/env bash
#
# Apache 2.0.
# This script adds deltas, applies sliding window CMVN and writes the features to disk.
#
# Although this kind of script isn't necessary in speaker recognition recipes,
# it can be helpful in the diarization recipes. The script
# diarization/extract_ivectors.sh extracts i-vectors f... |
ad4f1228644c2a8acf0cf891cdf7fb6a7e748ba5dc821b8dfd034f8bb2093be1 | Shell | 3,012 | 106 | #!/usr/bin/env bash
# this script is used for comparing decoding results between systems.
# e.g. local/chain/compare_wer_general.sh exp/chain_cleaned/tdnn_{c,d}_sp
# For use with discriminatively trained systems you specify the epochs after a colon:
# for instance,
# local/chain/compare_wer_general.sh exp/chain_cleane... |
0ef903896f45b90a7ccd751adf7b71c6637f9a8fcdc0fc70189589b4ea5ab464 | Shell | 3,018 | 87 | #!/usr/bin/bash
set -euxo pipefail
GSE=GSE1303990
sf_marker='GABAergic_markers_fc.txt,Glutamatergic_markers_fc.txt,Non.Neuronal_markers_fc.txt'
ta_marker='tasic2016_gaba.csv,tasic2016_glu.csv,tasic2016_gli.csv'
cu_marker='cusanovich2018_inh.txt,cusanovich2018_ext.txt,cusanovich2018_gli.txt'
tn_marker='tasic2018_gaba.t... |
3dad67df0904f61c68eaf75acb515431130d18dfee55d5c856b13cf71941794c | Shell | 3,018 | 116 | #!/bin/bash
# Copyright 2021 Huawei Technologies Co., Ltd
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law ... |
2299a8aab90aa61e992d392daf46ffff324bb97d83359ad25a20ccc4be554972 | Shell | 3,027 | 127 | #!/bin/bash
set -e
echo $line
echo "Test: Generate data for pretraining the fragment-based sequence models..."
echo $line
python -m drugex.dataset \
${DATASET_COMMON_ARGS} \
-i ${TEST_DATA_PRETRAINING} \
-o ${PRETRAINING_PREFIX} \
-mt smiles \
${DATASET_FRAGMENT_ARGS}
echo "Test: Done."
echo $line
echo "Test: Genera... |
53d05753eceb15e10db4a3f13f362a305cb0cdee96f48c0edb416054d8e2484d | Shell | 3,030 | 96 | #!/usr/bin/env bash
# This script aims at helping create a PR to update the manifests of the
# kubeflow/kubeflow repo.
# This script:
# 1. Checks out a new branch
# 2. Copies files to the correct places
# 3. Commits the changes
#
# Afterwards the developers can submit the PR to the kubeflow/manifests
# repo, based on ... |
b0544418c5dcd9441c6aa5ba987548e6b62ee21dfe858963b59128ed2daebd1f | Shell | 3,036 | 10 | sed -n '/Mandrillus_sphinx/,/^$/p' /data/share/htp/TRNP1/paper_data/regulation/data/TFs/ClusterBuster/results/OWMs_apes_intron_weighted/cbust_weighted_c5_m3_f1.txt > /data/share/htp/TRNP1/paper_data/regulation/data/TFs/ClusterBuster/results/OWMs_apes_intron_weighted/subset_cbust/scores/Mandrillus_sphinx.txt
sed -n '/Ma... |
25d766a4038a1b538f13bf62984fe714ee8c771bcf70132d9089777e11c21361 | Shell | 3,037 | 116 | #!/bin/bash
# Copyright 2021 Huawei Technologies Co., Ltd
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law ... |
4744137d94442106e1928450421718dc108f0bf0e76452e0aac343d168f10922 | Shell | 3,039 | 111 | #!/bin/bash
# Copyright 2020-2021 Huawei Technologies Co., Ltd
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable... |
4227dd22ee87c148da6bcd212e86cea76c6cd3aac1d6d40088672fe158d831df | Shell | 3,040 | 69 | #!/usr/bin/env bash
# Copyright 2015 David Snyder
# Copyright 2017 Emre Yilmaz (Adapted)
# Apache 2.0.
#
if [ $# != 6 ]; then
echo "Usage: $0 <plda-data-dir> <enroll-data-dir> <test-data-dir> <plda-ivec-dir> <enroll-ivec-dir> <test-ivec-dir>"
fi
plda_data_dir=${1%/}
enroll_data_dir=${2%/}
test_data_dir=${3%/}
pld... |
2e46d833fc91d4c26819b3cc647f58707ed938024d69ccb5d9102d9a1f5c554c | Shell | 3,042 | 98 | #!/bin/bash
# Copyright 2021 Huawei Technologies Co., Ltd
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law ... |
4c77ecc843232fa9d2f32cd870e7b3b1fd2765ac1b224b5fee3ad16a3497bd5a | Shell | 3,042 | 116 | #!/bin/bash
# Copyright 2021 Huawei Technologies Co., Ltd
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law ... |
0ec9709c42db433935531046f4d99901a7465af8a22da21f97e4b6f72a50c1b7 | Shell | 3,046 | 10 | sed -n '/Mandrillus_sphinx/,/^>/p' /data/share/htp/TRNP1/paper_data/regulation/data/TFs/ClusterBuster/results/OWMs_apes_intron_weighted/cbust_weighted_c5_m3.txt > /data/share/htp/TRNP1/paper_data/regulation/data/TFs/ClusterBuster/results/OWMs_apes_intron_weighted/subset_cbust/motifs/tmp/Mandrillus_sphinx.txt
sed -n '/M... |
25061d2595dbcd06ba1d6e8fbb32af37657e5a343717e2856fb1ce48630b0af6 | Shell | 3,049 | 91 | #!/bin/bash
# Copyright 2020-2021 Huawei Technologies Co., Ltd
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable... |
cf60e5b1659663636d736ee4c3529077b6fdd3eb528289f827d6e7627c446baf | Shell | 3,051 | 75 | #!/usr/bin/env bash
# The script reports:
# 1. Images used by the Kubeflow Working Groups
# 2. All images used by Kubeflow
# The reported image lists are saved in respective files under ../docs/image_lists directory
# The script must be executed from the `hack` folder as it use relative paths
# Future release process... |
7272d94cc81c98a5be469e53f6a537f03d641d78b2ee83f0012aae783416b22c | Shell | 3,054 | 72 | #!/bin/bash -l
# Batch script to run a serial array job under SGE
# Request 20 minutes of wallclock time (format hours:minutes:seconds).
# one job ran on frontend was 2 min
#$ -l h_rt=0:20:0
# Request 1 gigabyte of RAM (must be an integer followed by M, G, or T)
# /usr/bin/time --verbose codeml gave Maximum resident... |
506c8aeacab00a6a96f3bc990305a90508455ccd0c9b4cd99be6dceaa169ad01 | Shell | 3,056 | 117 | #!/bin/bash
# Copyright 2021 Huawei Technologies Co., Ltd
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law ... |
5c0288f22b39c18f7df5765aae34c6198502902a00a8d25bbb2ffd5f52cdfa4d | Shell | 3,058 | 72 | #!/bin/bash -l
# Batch script to run a serial array job under SGE
# Request 20 minutes of wallclock time (format hours:minutes:seconds).
# one job ran on frontend was 2 min
#$ -l h_rt=0:20:0
# Request 1 gigabyte of RAM (must be an integer followed by M, G, or T)
# /usr/bin/time --verbose codeml gave Maximum resident... |
8dc8781bd954834a88ae397f773add2f57669a832b6cd1df75cce80e17b9dc66 | Shell | 3,058 | 72 | #!/bin/bash -l
# Batch script to run a serial array job under SGE
# Request 20 minutes of wallclock time (format hours:minutes:seconds).
# one job ran on frontend was 2 min
#$ -l h_rt=0:20:0
# Request 1 gigabyte of RAM (must be an integer followed by M, G, or T)
# /usr/bin/time --verbose codeml gave Maximum resident... |
99ac7c7db95e7f8b03b740a278d9a352d1204f72afe7f00f7b591419a35b59eb | Shell | 3,059 | 173 | #!/bin/bash
DATA_NAME=(${@:1:1})
echo ${DATA_NAME}
DATA_NAME=PPMI
WD_DIR=${HOME}/scratch
MRIQC_VERSION=0.16.1
CON_IMG=${HOME}/scratch/container_images/mriqc_${MRIQC_VERSION}.simg
BIDS_DIR=${WD_DIR}/${DATA_NAME}_BIDS
DATA_DIR=${WD_DIR}/${DATA_NAME}_fmriprep_anat_20.2.0/fmriprep
OUT_DIR=${WD_DIR}/${DATA_NAME}_mriqc-${MR... |
fc2d43155037e9e0d6cf8e33807f0b0e57e52afecd04d8e74a15af712aa1b242 | Shell | 3,059 | 73 | #!/bin/bash -l
# Batch script to run a serial array job under SGE
# Request 20 minutes of wallclock time (format hours:minutes:seconds).
# one job ran on frontend was 2 min
#$ -l h_rt=0:20:0
# Request 1 gigabyte of RAM (must be an integer followed by M, G, or T)
# /usr/bin/time --verbose codeml gave Maximum resident... |
085cd7d7dbe6587387f58660e4686a0781641987391d8a76a5ac979b5a7d1abf | Shell | 3,060 | 72 | #!/bin/bash -l
# Batch script to run a serial array job under SGE
# Request 20 minutes of wallclock time (format hours:minutes:seconds).
# one job ran on frontend was 2 min
#$ -l h_rt=0:20:0
# Request 1 gigabyte of RAM (must be an integer followed by M, G, or T)
# /usr/bin/time --verbose codeml gave Maximum resident... |
691802619f90ded481179cea4b08a02fbd28eed682c43e694bef4184389af97f | Shell | 3,060 | 84 | #!/usr/bin/env bash
# Copyright 2016-2018 David Snyder
# 2017-2018 Matthew Maciejewski
# Apache 2.0.
# This script is a modified version of diarization/score_plda.sh
# that replaces i-vectors with x-vectors.
#
# This script computes PLDA scores from pairs of x-vectors extracted
# from segments of a recor... |
d0bbef40008a06ae298dea2fbd491494ead5318cb0d645eebf9cffe40179e2e7 | Shell | 3,068 | 72 | #!/bin/bash -l
# Batch script to run a serial array job under SGE
# Request 20 minutes of wallclock time (format hours:minutes:seconds).
# one job ran on frontend was 2 min
#$ -l h_rt=0:20:0
# Request 1 gigabyte of RAM (must be an integer followed by M, G, or T)
# /usr/bin/time --verbose codeml gave Maximum resident... |
e8591be29f1d2be77bf1c9a6087dd2d8ef21d7bedb1178ab99099eda1de0432e | Shell | 3,068 | 72 | #!/bin/bash -l
# Batch script to run a serial array job under SGE
# Request 20 minutes of wallclock time (format hours:minutes:seconds).
# one job ran on frontend was 2 min
#$ -l h_rt=0:20:0
# Request 1 gigabyte of RAM (must be an integer followed by M, G, or T)
# /usr/bin/time --verbose codeml gave Maximum resident... |
a25acc1cde223b456502f385a18983f888c8a2e9f789ffeaa21fe3a484da7625 | Shell | 3,069 | 117 | #!/bin/bash
# Copyright 2021 Huawei Technologies Co., Ltd
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law ... |
d656353f346afa1845a20b7712c4a0b830efae4bad6b673db2d166e70fe78d41 | Shell | 3,069 | 72 | #!/bin/bash -l
# Batch script to run a serial array job under SGE
# Request 20 minutes of wallclock time (format hours:minutes:seconds).
# one job ran on frontend was 2 min
#$ -l h_rt=0:20:0
# Request 1 gigabyte of RAM (must be an integer followed by M, G, or T)
# /usr/bin/time --verbose codeml gave Maximum resident... |
97e3bc2049c4f0d332199b7eae9930ff15867f9074f84e25a499b3c882b0fbe6 | Shell | 3,071 | 102 | #!/usr/bin/env bash
# this is the standard "tdnn" system, built in nnet3; it's what we use to
# call multi-splice.
# At this script level we don't support not running on GPU, as it would be painfully slow.
# If you want to run without GPU you'd have to call train_tdnn.sh with --gpu false,
# --num-threads 16 and --min... |
11c0ed84d98229b9c97da9838b8d7fff30ee997b905a07fe61c60ea4581fd5a3 | Shell | 3,079 | 113 | #!/bin/bash
# Copyright 2020-2021 Huawei Technologies Co., Ltd
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable... |
dd101cb617f031ac31c550827e524b175d57774e5d2bf2b38c9023a3b15e6f21 | Shell | 3,079 | 98 | #!/bin/bash
# Copyright 2022 Huawei Technologies Co., Ltd
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law ... |
d1201ce5b62091015aed9dec8ab5673697fa39a69161c6fa6f8e99d1da1c6afc | Shell | 3,081 | 62 | #!/usr/bin/bash
set -euxo pipefail
GSE=GSE1303990
sf_marker='GABAergic_markers_fc.txt,Glutamatergic_markers_fc.txt,Non.Neuronal_markers_fc.txt'
ta_marker='tasic2016_gaba.csv,tasic2016_glu.csv,tasic2016_gli.csv'
cu_marker='cusanovich2018_inh.txt,cusanovich2018_ext.txt,cusanovich2018_gli.txt'
tn_marker='tasic2018_gaba.t... |
9792b09f92c8a8b8c9a94387fef04bf873f29c6010eebfec21e4e7630c0f277c | Shell | 3,083 | 121 | #!/bin/bash
# Copyright 2022 Huawei Technologies Co., Ltd
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law ... |
481ba27415cdafccb4cd8f121727850e12d630ea0604a9d1e4c3a75092293cad | Shell | 3,086 | 146 | #MOLGENIS nodes=1 ppn=1 mem=8gb walltime=23:59:00
### variables to help adding to database (have to use weave)
#string internalId
#string sampleName
#string project
#string uniqueID
###
#string stage
#string checkStage
#string reads1FqGz
#string reads2FqGz
#string sailfishDir
#string sailfishVersion
#string uniqueID
#... |
Subsets and Splits
No community queries yet
The top public SQL queries from the community will appear here once available.