sha256 stringlengths 64 64 | language stringclasses 28
values | size int32 1 491k | lines int32 1 23.2k | content stringlengths 1 200k |
|---|---|---|---|---|
d89e646c09a987e3c237e01ecb474fafc40026fddef8bd4ef1a06566c97060fd | Shell | 3,086 | 120 | #!/usr/bin/env bash
# this script is used for comparing decoding results between systems.
# e.g. local/chain/compare_wer.sh exp/chain/cnn{1a,1b}
# Copyright 2017 Chun Chieh Chang
# 2017 Ashish Arora
if [ $# == 0 ]; then
echo "Usage: $0: <dir1> [<dir2> ... ]"
echo "e.g.: $0 exp/chain/cnn{1a,... |
ff48b5634920e8912884ed36a2d827c10f51445961976aee6158dc31048480fd | Shell | 3,088 | 109 | #!/bin/bash
# Copyright 2021 Huawei Technologies Co., Ltd
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law ... |
af7327d1af405219743e9107e27ff461a381b57340b3b31329222c95115f590e | Shell | 3,091 | 85 | #!/bin/bash
#
# Copyright 2019 The Kubeflow Authors
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law o... |
38da81b3c91c6fab7bc5b4eb45e023cfddc986587b1dd9dcd7df05539e8eb153 | Shell | 3,092 | 84 | #!/usr/bin/env bash
# Inherited from the WSJ nnet3 recipe, modified for use with ECA
# this script is called from scripts like run_ms.sh; it does the common stages
# of the build, such as feature extraction.
# This is actually the same as local/online/run_nnet2_common.sh, except
# for the directory names.
mfccdir=mf... |
4f3b39e1d4f89ba76d1545934eee562de6840db009063f2f183571a4b6f5555f | Shell | 3,104 | 70 | #! /bin/bash
# Fetch the NVIDIA DLSS SDK into a user-local path and export DLSS_SDK so the
# engine's DLSSRRDenoiser plugin (DLSS Ray Reconstruction denoiser for the
# rt_lens sensor + DLSS Super Resolution scene-capture upscaler) builds with
# real NGX support.
#
# The SDK is licensed by NVIDIA and may not be redistr... |
ee0037c5610fd0caa142390806bff341746a0c9dbd5ef7fea8078bbf0846957f | Shell | 3,105 | 72 | #!/bin/bash
# Copyright (C) 2017-2018 Lucas Czech and HITS gGmbH
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# ... |
fbe5153aa3a1ac40a1c6b44336dc9b40d5b0e01a55a661b0cd097258c2ed88a1 | Shell | 3,109 | 116 | #!/bin/bash
# Copyright 2020 Huawei Technologies Co., Ltd
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law ... |
db41a748afc92a06b74b5aad57aa527ac83f1d5599295d670e5d499a27cfdcee | Shell | 3,122 | 86 | #!/usr/bin/env bash
# Copyright 2013 (Authors: Daniel Povey, Bagher BabaAli)
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# THIS CODE IS... |
1f9d50ce39b93bf1895f3d9ef92a7c95a248e20ea63db70d15dacc01f0b8010a | Shell | 3,124 | 76 | # Set environment variables.
export MKL_NUM_THREADS=2
export NUMEXPR_NUM_THREADS=2
export OMP_NUM_THREADS=2
# Define constants.
SERMODS=../../data/models/5HT/5HT_AugmentedGIFs.lmod
GABAMODS=../../data/models/GABA/GABA_iGIF_NPs.lmod
REPEATS=20
PROCESSES=10
# Generate GIFnet models.
python ./generate_models.py --sermod... |
341c32c7fbe834958afd8907bc0518e2a181612dbfad630e051444c02f9161bb | Shell | 3,136 | 121 | #!/bin/bash
# Copyright 2022 Huawei Technologies Co., Ltd
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law ... |
154ba872d5a13ed48128cdad116ad7f7df105c57014f1d8ecd540387e3fcc7f4 | Shell | 3,141 | 86 | #!/usr/bin/env bash
# Copyright 2010-2012 Microsoft Corporation
# 2012-2014 Johns Hopkins University (Author: Daniel Povey)
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# ht... |
9bf1bf87220d715c0f210f16b951be8320c85e5184c3e36ebac6fe6b8c6eda96 | Shell | 3,142 | 69 | #!/bin/bash -l
# Batch script to run a serial array job under SGE
# Request 20 minutes of wallclock time (format hours:minutes:seconds).
# one job ran on frontend was 2 min
#$ -l h_rt=0:20:0
# Request 1 gigabyte of RAM (must be an integer followed by M, G, or T)
# /usr/bin/time --verbose codeml gave Maximum resident... |
ba328a0a10ae9c51f987f47ede9e02f9e82c7b1899d5ef59fdaecb550296c8c1 | Shell | 3,142 | 119 | #!/bin/bash
# Copyright 2021 Huawei Technologies Co., Ltd
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law ... |
80aab42e068f0c86e87026efc32f8d92819a96b477c0ce9e4922e405d73fc9c9 | Shell | 3,143 | 92 | #!/bin/bash
# script that execute experiments symulations from the file expFiletoRun
# script generate history of executed experiments
export PATH=$PATH:/usr/local/nsp-server/src/sh/
writeDebug.sh `basename "$0 started."`
writeOutput.sh "Reading Local experiments queue"
# Set default values for parameters
expF... |
3c8bee345b854540524aedc4afd4ae3019b5e8d231d4088ed9c9963bfcb371fc | Shell | 3,153 | 74 | #!/bin/bash -l
# Batch script to run a serial array job under SGE
# Request 20 minutes of wallclock time (format hours:minutes:seconds).
# one job ran on frontend was 2 min
#$ -l h_rt=0:20:0
# Request 1 gigabyte of RAM (must be an integer followed by M, G, or T)
# /usr/bin/time --verbose codeml gave Maximum resident... |
261b54ece1711b9b1b7fa721a501ee9005b96bde6da171551738158caae1db18 | Shell | 3,155 | 111 | #!/bin/bash
# Copyright 2021 Huawei Technologies Co., Ltd
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law ... |
7daf15becebb8fca9116c0a021d3f8ea8d94abf0db1b7eaaaab564fc20aaf0fd | Shell | 3,157 | 96 | #!/bin/bash
# Copyright 2020 Huawei Technologies Co., Ltd
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law ... |
7cfb0d8978efcb5fd0debd8c08ec2ea11f0dce0b1943f4526f1419a1ac39510f | Shell | 3,160 | 99 | #!/bin/bash
# script that execute experiments symulations from the file expFiletoRun
# script generate history of executed experiments
# input:
# Set default values for parameters
containerName=`docker ps -l -q --filter name=nsp_genesis`
expFiletoRun='localSimulationQueue.nsp'
expFiletoRunTmp='localSimulat... |
a03dcf749dc156aafec9a692cbe816ed21c4261f5085f1e4ad184d13072ff677 | Shell | 3,163 | 100 | #!/usr/bin/env bash
# shellcheck source=../utils.sh
source $( cd -- "$(dirname "$0")" >/dev/null 2>&1 ; pwd -P )/../utils.sh
# Check if there is input
[[ ( $# -eq 0 ) ]] && displayhelp $0 1
# Preparing the default values for variables
tmp=.
### print input
printline=$( basename -- $0 )
echo "${printline}" "$@"
# Pa... |
272fe195f14edf98b58dcc59cbb0ba0f7b03881e59dbff066ae473d6bc3ae449 | Shell | 3,173 | 97 | #!/bin/bash
# Copyright 2022 Huawei Technologies Co., Ltd
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law ... |
855e7db31a7e4ae0dae093e242ce3039141fad1971875085572dc1f762d44f80 | Shell | 3,174 | 98 | #!/bin/bash
# Copyright 2022 Huawei Technologies Co., Ltd
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law ... |
aff5c83f02b8d392de733d50e55e21e1bf256ddb2cbd79a8af3cedb437115354 | Shell | 3,179 | 96 | #!/usr/bin/env bash
# Copyright 2016 Vimal Manohar
# 2016 Johns Hopkins University (author: Daniel Povey)
# Apache 2.0
# This script demonstrates how to re-segment training data selecting only the
# "good" audio that matches the transcripts.
# The basic idea is to decode with an existing in-domain acousti... |
eb78c1d16bfb17063b019f6316be9fe764105303b89182ee62401b5cbf6576aa | Shell | 3,186 | 60 | #!/usr/bin/bash
set -euxo pipefail
GSE=GSE1303990
sf_marker='GABAergic_markers_fc.txt,Glutamatergic_markers_fc.txt,Non.Neuronal_markers_fc.txt'
ta_marker='tasic2016_gaba.csv,tasic2016_glu.csv,tasic2016_gli.csv'
cu_marker='cusanovich2018_inh.txt,cusanovich2018_ext.txt,cusanovich2018_gli.txt'
tn_marker='tasic2018_gaba.t... |
075c63619835eea5a14b3ca94ad1ee58306b3e8ff3920439e26415bbefe68803 | Shell | 3,195 | 62 | #! /bin/bash
#
#
BASE_PATH=$1
OUTPUT_DIR=$2
prefix=$3
roi_th=$4
ATLAS_DIR=${BASE_PATH}/suit_atlas
ImageMath 3 ${OUTPUT_DIR}/${prefix}cb_wgm.nii.gz m ${OUTPUT_DIR}/${prefix}t1_head_bc.nii.gz ${OUTPUT_DIR}/${prefix}cb_mask.nii.gz
echo "Running affine registration: cerebellum to template"
inputImg=${OUTPUT_DIR}/${prefi... |
9edaac3939415e2ddd98fabf10444fe6e0e319331ac17a7c11ba3fcdfacef96b | Shell | 3,198 | 90 | #This script is not really supposed to be run directly
#Instead, it should be sourced from the decoding script
#It makes many assumption on existence of certain environmental
#variables as well as certain directory structure.
if [ ${dataset_type} != "supervised" ] ; then
mandatory_variables="my_data_dir my_data_list ... |
8cdef6ecd28b9ea8283d9bcfff4646e824e760677e0d45ec01e804a70969323a | Shell | 3,220 | 102 | #!/bin/bash -u
# Copyright 2012 Arnab Ghoshal
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# THIS CODE IS PROVIDED *AS IS* BASIS, WITHOUT... |
dd56abb2d45a5e2cbbefdc1dcbcafbeb62232925272f05b478e44b711e917406 | Shell | 3,220 | 81 | #!/usr/bin/env bash
# Copyright 2016 Pegah Ghahremani
# This script used to train iVector extractor shared across different languages
# using input data dir containing training data for multiple languages.
# This script uses the input "{lda_mllt_lang}" language to train lda-mllt model.
. ./cmd.sh
set -e
stage=4
suff... |
fcfa40f9e8276941cba52d0650063b1f9736d306f4ba38375226fc8d6d5affe9 | Shell | 3,228 | 72 | #!/usr/bin/env bash
# Prerequisite checks for install-scenic. Read-only, no sudo, fast.
# Exits non-zero only on hard blockers: no interpreter, no pip.
# A missing carla client is a WARN — install order is the skill's job to fix.
# On-camera banner: every skill run announces itself, so a terminal recording
# shows whic... |
7d0b32803602672a599ec1c5113fcc6140cb716c233b1c0e43ed38e5538720f3 | Shell | 3,236 | 97 | #!/bin/bash
# Copyright 2020 Audio, Speech and Language Processing Group (ASLP@NPU), Northwestern Polytechnical University (Authors: Zhuoyuan Yao, Xiong Wang, Jingyong Hou, Lei Xie)
# 2020 AIShell-Foundation (Author: Bengu WU)
# 2020 Beijing Shell Shell Tech. Co. Ltd. (Author: Hui BU)
# Apache 2.... |
cfa73cede6fb0e0f44741aca4cc42c8e511fb4c31adcbdd0897947f95e7487d1 | Shell | 3,240 | 110 | #!/bin/bash
# Copyright 2022 Huawei Technologies Co., Ltd
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law ... |
1122c8210f9d8ea2436f24f2cdbcc83b6b963de09540d2b5d58bf56b5cae7a9c | Shell | 3,248 | 84 | #!/bin/bash
set -euxo pipefail
GSE=GSE111586
sf_marker='GABAergic_markers_fc.txt,Glutamatergic_markers_fc.txt,Non.Neuronal_markers_fc.txt'
ta_marker='tasic2016_gaba.csv,tasic2016_glu.csv,tasic2016_gli.csv'
cu_marker='cusanovich2018_inh.txt,cusanovich2018_ext.txt,cusanovich2018_gli.txt'
tn_marker='tasic2018_gaba.txt,tas... |
5757a0b48759dd449ea73d3b8ef8e2c5087bdb980aca024403d5104b775a66eb | Shell | 3,253 | 89 | #!/bin/bash -u
# Copyright 2012 Arnab Ghoshal
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# THIS CODE IS PROVIDED *AS IS* BASIS, WITHOUT... |
2f8bf49106647f3e5181bbd23c0ae3f03226338cdfd017148c758ccbbf979b08 | Shell | 3,254 | 104 | #!/bin/bash
# Copyright 2021 Huawei Technologies Co., Ltd
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law ... |
03e719552584723bed29cef5e3307da846177e30d85d863610b2edd74eb23337 | Shell | 3,260 | 87 | #!/usr/bin/env bash
# This script prepares the data directory used for TensorFlow based RNNLM traiing
# it prepares the following files in the output-directory
# 1. $dir/wordlist.rnn.final : wordlist for RNNLM
# format of this file is like the following:
# 0 The
# 1 a
# 2 is
# ....... |
f931187c8c146cd4f70652eea3dad8c4c8387cf1d565de6de687860013de2ee1 | Shell | 3,260 | 96 | #!/usr/bin/env bash
# Copyright 2012 Johns Hopkins University (Author: Yenda Trmal)
# Apache 2.0.
#Begin configuration
ignore_missing_txt=false #If the reference transcript txt is missing, \
#shall we ignore it or treat it as a fatal error?
#End configuration
echo "$0 $@" # Print the comm... |
9466021a2812b909f07fc213ead1d4114923512fa017fe269430622dc25e3405 | Shell | 3,268 | 76 | #!/bin/bash
set -euxo pipefail
echo $PATH
f_marker='GABAergic_markers_fc.txt,Glutamatergic_markers_fc.txt,Non.Neuronal_markers_fc.txt'
ta_marker='tasic2016_gaba.csv,tasic2016_glu.csv,tasic2016_gli.csv'
cu_marker='cusanovich2018_inh.txt,cusanovich2018_ext.txt,cusanovich2018_gli.txt'
tn_marker='tasic2018_gaba.txt,tasic20... |
f208cd5de3f89eaf1cd023ef06d07d43bee721ef9864021e988cc14b060840ed | Shell | 3,269 | 95 | #!/usr/bin/env bash
. ./cmd.sh
stage=1
train_stage=-10
use_gpu=true
set -e
. ./cmd.sh
. ./path.sh
. ./utils/parse_options.sh
# assume use_gpu=true since it would be way too slow otherwise.
if ! cuda-compiled; then
cat <<EOF && exit 1
This script is intended to be used with GPUs but you have not compiled Kaldi ... |
a27b0a71127435368897eb7fe8f2005cc234f41c3bd44e2483d8c8883c872269 | Shell | 3,277 | 73 | #!/usr/bin/env bash
# Self-contained environment for the check-ue5-limitations skill (CARLA on UE 5.5,
# branch ue5-dev). Source before the other scripts: source env.sh
#
# CARLA_UE5_ROOT a ue5-dev checkout (UE 5.5). Auto-detected from a few usual
# places when unset.
# CARLA_UE58_ROOT option... |
5da05b31a23fbc029eb1b105c8928a85d14ea6edadffcc20ca3dfa29e4a63e51 | Shell | 3,282 | 123 | #!/bin/bash
# Copyright 2021 Huawei Technologies Co., Ltd
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law ... |
22b3cc4bdc55f3440ab6aa3bc1c024b11cf3ecd7c1398c6dca1de06cff158b3e | Shell | 3,284 | 102 | #!/usr/bin/env bash
# Copyright 2014, University of Edinburgh (Author: Pawel Swietojanski)
# AMI Corpus dev/eval data preparation
# To be run from one directory above this script.
. ./path.sh
#check existing directories
if [ $# != 2 ]; then
echo "Usage: ami_data_prep.sh </path/to/AMI-MDM> <mic>"
exit 1;
fi
... |
a8f63ad57e7ce612abc43496ab7039d516ab56a5a8e68b66e22efa37f2d5398b | Shell | 3,288 | 103 | #!/bin/bash
# Author: Ruiqi Chen
# Version: 01/25/2022
#
# Update (01/26/2020): Now convert_res will created an placeholder when it skips a subject, and
# this script will find out these placeholders, delete the folder and remove the subjects from
# the list. (to be implemented)
#
# This script has two functionality:
... |
4b3cc0c531c1f627fc684e40ddc25daeca22e1730c591317031de69479c8a7ce | Shell | 3,289 | 89 | #!/usr/bin/env bash
# Copyright 2017 Radboud University (Author: Emre Yilmaz)
. ./cmd.sh
. ./path.sh
stage=0
feat_nj=10
train_nj=10
decode_nj=10
famecorpus=./corpus/ASR
. ./utils/parse_options.sh
numLeavesTri1=5000
numGaussTri1=25000
numLeavesMLLT=5000
numGaussMLLT=25000
numLeavesSAT=5000
numGaussSAT=25000
numGauss... |
04e705c2009dccfcbc9b11011364625051775b2280a1c6ac8652c0075e09bef9 | Shell | 3,295 | 94 | #!/usr/bin/env bash
# Copyright 2017 Beijing Shell Shell Tech. Co. Ltd. (Authors: Hui Bu)
# 2017 Jiayu Du
# 2017 Chao Li
# 2017 Xingyu Na
# 2017 Bengu Wu
# 2017 Hao Zheng
# Apache 2.0
# This is a shell script that we demonstrate speech recognition using AIShell-1 data.... |
6f82df445b79632b896a95eb10bb6682c5fb9be08bbad88911b4ef7940499955 | Shell | 3,295 | 92 | #!/bin/bash
# Working out pronunciation probabilities and testing with them.
set -e #Exit on non-zero return code from any command
set -o pipefail #Exit if any of the commands in the pipeline will
#return non-zero return code
set -u #Fail on an undefined variable
. conf/commo... |
75059f40ca092a1f65b6a741bd56f5245c943955bdaa7701ab3a8f61f21e2a12 | Shell | 3,300 | 62 | #!/bin/bash
set -euxo pipefail
GSE=GSE127257
#GSE_train=GSE123576
sf_marker='GABAergic_markers_fc.txt,Glutamatergic_markers_fc.txt,Non.Neuronal_markers_fc.txt'
ta_marker='tasic2016_gaba.csv,tasic2016_glu.csv,tasic2016_gli.csv'
cu_marker='cusanovich2018_inh.txt,cusanovich2018_ext.txt,cusanovich2018_gli.txt'
if [ "$2" ==... |
b934eb1ab0beea3c5db7766be2778d613e0d9dc203e5ba075f5cd5e484a58f20 | Shell | 3,301 | 74 | #!/usr/bin/env bash
# Prerequisite checks for install-leaderboard. Read-only, no sudo.
# Hard blockers: no git, no pip. Everything else is advisory — this skill's job
# is to create the environment the other leaderboard skills demand.
# On-camera banner: every skill run announces itself, so a terminal recording
# shows... |
c9ef169bbbb21f05455d97546ad855dd7ff6fdc0afdb8fb766e97b669f812ee6 | Shell | 3,303 | 127 | #!/bin/bash
# Copyright 2021 Huawei Technologies Co., Ltd
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law ... |
f723691f93682c011cc35cac61f56b1818dc1b20b16509df873c400a886ef138 | Shell | 3,303 | 154 | #!/bin/bash
# run fastq_screen (more generic version of qc-fastqscreen.sh)
# script filename
script_path="${BASH_SOURCE[0]}"
script_name=$(basename "$script_path")
segment_name=${script_name/%.sh/}
echo -e "\n ========== SEGMENT: $segment_name ========== \n" >&2
# check for correct number of arguments
if [ ! $# ==... |
284ad100b85f6622e1c873c3e1d703a0f885832bbab1a5a7cfd06a61d6fee8a0 | Shell | 3,304 | 124 | #!/bin/bash
# Copyright 2021 Huawei Technologies Co., Ltd
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law ... |
626a6bbb137b22bc11132b8919dd0f98d6516d075277fedee197a6a2efec7356 | Shell | 3,304 | 57 | #!/usr/bin/env bash
# Copyright 2014 Gaurav Kumar. Apache 2.0
# This is as run_sgmm2.sh but excluding the "speaker-dependent weights",
# so not doing the symmetric SGMM.
. ./cmd.sh
## SGMM on top of LDA+MLLT+SAT features.
if [ ! -f exp/ubm6a/final.mdl ]; then
steps/train_ubm.sh --silence-weight 0.5 --cmd "$trai... |
1f5f1c3cc764816be386b4bdada67e35a401cf74743efef2b32d610fc5869ae2 | Shell | 3,315 | 67 | #!/usr/bin/env bash
# Self-contained environment for the import-carla-prop skill.
# Source before the skill's other scripts: source env.sh
#
# The skill library is engine-agnostic — it ships inside a CARLA checkout but
# not necessarily the ue4-dev one this skill targets — so the target instance
# is chosen at runtime... |
5934d2c7302747cd5f0060d4c1be5e51e753b358f0ee126e6821bc682aec23c6 | Shell | 3,327 | 100 | #!/bin/bash
# Copyright 2020-2021 Huawei Technologies Co., Ltd
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable... |
7c1e79810c2625d5b560c259fbdbfae0fd04528621df2945bafb39ac3df72e3b | Shell | 3,327 | 98 | #!/usr/bin/env bash
. ./cmd.sh
stage=1
train_stage=-10
use_gpu=true
set -e
. ./cmd.sh
. ./path.sh
. ./utils/parse_options.sh
# assume use_gpu=true since it would be way too slow otherwise.
if ! cuda-compiled; then
cat <<EOF && exit 1
This script is intended to be used with GPUs but you have not compiled Kaldi w... |
19a2b438050ed89ca0152eb943dfd170639bd45885383e2fccdc06fcbeb5ffd1 | Shell | 3,333 | 116 | #!/bin/bash
# Copyright 2020-2021 Huawei Technologies Co., Ltd
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable... |
52a54be95356d93bc13fe348b3866d3b9d84e23099ed5323160c486c34393dea | Shell | 3,333 | 104 | #!/usr/bin/env bash
# Copyright 2013-2014 Johns Hopkins University (authors: Jan Trmal, Guoguo Chen, Dan Povey)
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/lic... |
23c2328d00959c69c73662c07c290db256ead5ad864da30af7fe85a922e62795 | Shell | 3,340 | 76 | #!/usr/bin/env bash
# Make the features, build the iVector extractor
. ./cmd.sh
stage=1
set -e
. ./cmd.sh
. ./path.sh
. ./utils/parse_options.sh
mkdir -p exp/nnet2_online
if [ $stage -le 1 ]; then
# this shows how you can split across multiple file-systems. we'll split the
# MFCC dir across multiple location... |
177da5e62e1b5a90d04455536431a2fb0e459c895ec9406efe8085a0b3ba4094 | Shell | 3,347 | 110 | #! /bin/bash
set -o pipefail
# ==============================================================================
# -- Set up environment --------------------------------------------------------
# ==============================================================================
SCRIPT_DIR=$(cd "$(dirname "$0")" && pwd)
CAR... |
cb535f05692efa421210ab0ab4451e08399e69fac4f81faba5619855542c3901 | Shell | 3,347 | 100 | #!/usr/bin/env bash
set -e
# Copyright 2009-2012 Microsoft Corporation Johns Hopkins University (Author: Daniel Povey)
# Apache 2.0.
# This is modified from the script in standard Kaldi recipe to account
# for the way the WSJ data is structured on the Edinburgh systems.
# - Arnab Ghoshal, 29/05/12
if [ $# -ne 1 ]... |
3f3bc2438ff38b3a247c02d28ed67ea044a0e15076af1983b6e1064dbaf5fd6b | Shell | 3,349 | 103 | #!/usr/bin/bash
rm count_files.txt
rm data.txt
python evalPatchDock.py 3F74_A_B
python evalPatchDock.py 3HRD_E_H
python evalPatchDock.py 1ERN_A_B
python evalPatchDock.py 2B3Z_C_D
python evalPatchDock.py 4KGG_C_A
python evalPatchDock.py 2FE8_A_C
python evalPatchDock.py 1SOT_A_C
python evalPatchDock.py 2LBU_E_D
python ev... |
c8887f4a61a0f663a5e4615a2e0ac1f22307123918801dfa7aad56297d7d5bf9 | Shell | 3,355 | 92 | #!/bin/bash
## Directories
logdir="/home/yongin/Gen/181130_IntMethod_test/1214/out/exp2_l2l1h1"
## Parameter Lists for Looping
# Network Setup
# declare -a network_setup_list=('0_5_5_5' '5_5_5' '0_5_5_15')
# declare -a network_setup_list=('0_5_5_15' '0_5_5_5' '5_5_5')
declare -a network_setup_list=('1.B-3-1_2.F-5')
... |
178dee7e07630675f0c8bd2641923e3b4999cd7eb1cb87566b0162375c047bd5 | Shell | 3,356 | 85 | #!/usr/bin/env bash
# Copyright 2015 Johns Hopkins University (author: Vijayaditya Peddinti)
# Apache 2.0
# This script downloads the Concert Hall Impulse Responses - Pori, Finland
# and converts them to wav files with the required sampling rate
#==============================================
download=true
sampling_r... |
0b2bf6caf634c24ffaca46f68e8e30cfa481119616db4f775018baa4b098e153 | Shell | 3,358 | 66 | #!/bin/bash
set -uxo pipefail
#python ../../script/cATACter.py --original-filter --supervised distal --clabel id_order_distal --cindex global_index --rindex local_index --rlabel '' --verbose \
# --row global_ng_list/global_cell_ng_1_2C_cluster.csv,global_ng_list/global_cell_ng_1_3C_cluster.csv,global_ng_list/global_cel... |
6788623ff0c8a43fb8e0330943be855160e1b6390b9694fbaabdf4c133896a68 | Shell | 3,358 | 70 | #!/usr/bin/env bash
# Preflight for add-ros-publisher. Read-only, no sudo.
# Exits non-zero only on hard blockers.
# On-camera banner: every skill run announces itself, so a terminal recording
# shows which skill is doing the work rather than just its output. The name is
# taken from the directory so it cannot drift fr... |
a483232e880048bc9366747fcd6588f63a3d8b52d1dd7bf073d577f07e8a8621 | Shell | 3,360 | 65 | #!/usr/bin/bash
set -euxo pipefail
GSE=GSE126074
sf_marker='GABAergic_markers_fc.txt,Glutamatergic_markers_fc.txt,Non.Neuronal_markers_fc.txt'
ta_marker='tasic2016_gaba.csv,tasic2016_glu.csv,tasic2016_gli.csv'
cu_marker='cusanovich2018_inh.txt,cusanovich2018_ext.txt,cusanovich2018_gli.txt'
tn_marker='tasic2018_gaba.tx... |
a9ce6ccade7dc22cc9f4f974b345e78f32a2ee59ea20726fb873c5241c221d99 | Shell | 3,365 | 68 | #!/usr/bin/env bash
# Self-contained environment for the import-carla-map skill.
# Source before the skill's other scripts: source env.sh
#
# carla-agentic-tools is standalone (not inside a CARLA checkout), so the target
# instance is chosen at runtime. Both roots are overridable and must point at a
# real, built CARL... |
2b32c858550a73b721fde2d6bb69c4d7a14a4ea11c988d2a45d13580d00f1d94 | Shell | 3,367 | 93 | #!/usr/bin/env bash
# Copyright 2012 Johns Hopkins University (author: Daniel Povey)
# 2015 Guoguo Chen
# 2017 Hainan Xu
# 2017 Szu-Jui Chen
# This script trains LMs on the reversed Chime4 data, which we
# call it backward model.
# Begin configuration section.
affix=1a
dir=exp/rnnlm... |
cb4723a6dbb696094aa0ab6b3febd3e0f7670f5c48a682045d0c297b51e9305b | Shell | 3,375 | 90 | #!/bin/bash
set -euxo pipefail
sf_marker='GABAergic_markers_fc.txt,Glutamatergic_markers_fc.txt,Non.Neuronal_markers_fc.txt'
ta_marker='tasic2016_gaba.csv,tasic2016_glu.csv,tasic2016_gli.csv'
cu_marker='cusanovich2018_inh.txt,cusanovich2018_ext.txt,cusanovich2018_gli.txt'
tn_marker='tasic2018_gaba.txt,tasic2018_glu.txt... |
dfa42810bb9c63a74becee76ce07882f944255dcf44d0e898f79534b6208fca0 | Shell | 3,376 | 156 | #!/bin/bash
# run fastq_screen
# script filename
script_path="${BASH_SOURCE[0]}"
script_name=$(basename "$script_path")
segment_name=${script_name/%.sh/}
echo -e "\n ========== SEGMENT: $segment_name ========== \n" >&2
# check for correct number of arguments
if [ ! $# == 4 ] ; then
echo -e "\n $script_name ERROR:... |
d5922e9d827a7d76b507bc46beb36d2871f8ece122359be06184720d907f2cc2 | Shell | 3,381 | 112 | # This script runs first step to making GeneNetwork: remove duplicate samples
set -e
set -u
project_dir=
outfile=
config_templates=
jardir=
expression_file=
main(){
module load Java/1.8.0_144-unlimited_JCE
parse_commandline "$@"
rsync -vP $config_templates/2_config_RemoveDuplicates.json $project_dir/conf... |
ee8bf27e909b19ef11f5461838b14319daf8fec86067ab7b153d479e118389d2 | Shell | 3,386 | 64 | #!/bin/bash
set -euxo pipefail
#python ../../script/cATACter.py --original-filter --supervised distal --clabel id_order_distal --cindex global_index --rindex local_index --rlabel '' --verbose \
# --row global_ng_list/global_cell_ng_1_2C_cluster.csv,global_ng_list/global_cell_ng_1_3C_cluster.csv,global_ng_list/global_ce... |
c622a8a9034b7ca367ed6e7d58fc5b96b65c4ec7462dfc8a07c9e6e563b03d87 | Shell | 3,390 | 100 | #!/usr/bin/env bash
# Copyright 2014, University of Edinburgh (Author: Pawel Swietojanski)
# AMI Corpus dev/eval data preparation
. ./path.sh
#check existing directories
if [ $# != 2 ]; then
echo "Usage: ami_sdm_data_prep.sh <path/to/AMI> <dist-mic-num>"
exit 1;
fi
AMI_DIR=$1
MICNUM=$2
DSET="sdm$MICNUM"
SEG... |
ba811f62cb70bffe3f991c7255c60d954f14533f8f1937e970e8e11f0092fd99 | Shell | 3,394 | 97 | #!/usr/bin/env bash
# This is to be run after run_nnet2.sh
. ./cmd.sh
use_preconditioning=true
stage=1
train_stage=-10
use_gpu=true
. ./cmd.sh
. ./path.sh
. ./utils/parse_options.sh
if $use_gpu; then
if ! cuda-compiled; then
cat <<EOF && exit 1
This script is intended to be used with GPUs but you have not co... |
d6570a3e420d317dbe547d40e095342a44d10d82a86ec04c0bc7593293f2acb8 | Shell | 3,400 | 113 | #!/usr/bin/env bash
# 1c uses dropout with fewer but larger layers
#teps/info/nnet3_dir_info.pl exp/cnn1c_cifar10
#exp/cnn1c_cifar10: num-iters=60 nj=1..2 num-params=4.3M dim=96->10 combine=-0.00->-0.00 loglike:train/valid[39,59,final]=(-0.08,-0.01,-0.00/-0.71,-0.79,-2.09) accuracy:train/valid[39,59,final]=(0.98,1.0... |
1d9f5f94ece92d24217d2299f4570c71021c49b67024f028302b11c989f88e13 | Shell | 3,406 | 113 | #!/bin/bash -u
# Copyright 2012 Arnab Ghoshal
# Copyright 2010-2011 Microsoft Corporation
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
#... |
ec779c1ed2c589ba34eb8aa9a242af4d4dd68819228855301bca9661986d6927 | Shell | 3,407 | 88 | #!/usr/bin/env bash
# To be run from one directory above this script.
. ./path.sh
text=data/local/train/text
lexicon=data/local/dict/lexicon.txt
for f in "$text" "$lexicon"; do
[ ! -f $x ] && echo "$0: No such file $f" && exit 1;
done
# This script takes no arguments. It assumes you have already run
# aishell_d... |
7c5a7b3c68f1b00bdf262805cf14d0b8dd9c4f024b5d7d440fb121407f3877af | Shell | 3,408 | 111 | #!/bin/bash -u
# Copyright 2012 Arnab Ghoshal
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# THIS CODE IS PROVIDED *AS IS* BASIS, WITHOUT... |
d598c4ffe16d323d020b95090e95cbb0603444fab0a98e18af580ec1f43fc515 | Shell | 3,411 | 91 | #!/usr/bin/env bash
# Copyright 2018 AIShell-Foundation(Authors:Jiayu DU, Xingyu NA, Bengu WU, Hao ZHENG)
# 2018 Beijing Shell Shell Tech. Co. Ltd. (Author: Hui BU)
# Apache 2.0
. ./path.sh
. ./utils/parse_options.sh
if [ $# -ne 3 ]; then
echo "train_lms.sh <lexicon> <word-segmented-text> <dir>"
echo " ... |
6c6ae3a77ad2b81598411a70e94b54fc8c481ddb0f5b71c3fb7efeebfa8743d7 | Shell | 3,413 | 128 | #!/bin/bash
set -e
DOC_STRING="Run docker containers.
This script launches development docker containers for CARLA UE5."
USAGE_STRING=$(cat <<- END
Usage: $0 [options]
Run configurations (choose one):
--dev Run the development docker container
User and group options:
--user UID:GID Se... |
11f727debef033680075cb873f167798841ddc665ba324453a087061d51eede7 | Shell | 3,414 | 124 | #!/usr/bin/env bash
# Author : Gaurav Kumar, Johns Hopkins University
# Creates OpenFST lattices from Kaldi lattices
# This script needs to be run from one level above this directory
. ./path.sh
if [ $# -lt 3 ]; then
echo "Enter the latdir (where the lattices will be put), the decode dir containing lattices and the... |
facd02c2a1d5be45934dcf4f3a99aefe8197a896efa25279cde4501c13a13fec | Shell | 3,424 | 111 | #!/bin/bash -u
# Copyright 2012 Arnab Ghoshal
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# THIS CODE IS PROVIDED *AS IS* BASIS, WITHOUT... |
dd58f1952e0f35de62f39bd5dda962d95fc470ed4680671f86b430056d5866e1 | Shell | 3,426 | 106 | #!/usr/bin/env bash
# Copyright 2013 Johns Hopkins University (authors: Yenda Trmal)
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# THIS C... |
f082c94ea32a10407184cbcebccf188a083cf0f97dbe253121140fa02b547d42 | Shell | 3,434 | 168 | #!/bin/bash
DATA_NAME=(${@:1:1})
echo ${DATA_NAME}
DATA_NAME=ADNI
WD_DIR=${HOME}/scratch
MRIQC_VERSION=0.16.1
CON_IMG=${HOME}/scratch/container_images/mriqc_${MRIQC_VERSION}.simg
BIDS_DIR=${WD_DIR}/${DATA_NAME}_BIDS
DATA_DIR=${WD_DIR}/${DATA_NAME}_fmriprep_anat_20.2.0/fmriprep
OUT_DIR=${WD_DIR}/${DATA_NAME}_mriqc-${MR... |
81793c434bfa8fe544980933c41c98d77808d1c014de9b7266af563f9c57d7a4 | Shell | 3,445 | 112 | #!/usr/bin/env bash
# 1d is as 1c but adding batch-norm to all convolutional layers.
# batch-norm helps (0.78 -> 0.8).
# exp/cnn1d_cifar10: num-iters=60 nj=1..2 num-params=4.3M dim=96->10 combine=-0.10->-0.08 loglike:train/valid[39,59,final]=(-0.03,-0.00,-0.00/-0.63,-0.69,-0.68) accuracy:train/valid[39,59,final]=(1.0... |
324556ae89880e8c1436477d5bfb66a067a13c029860ad828c0d8f8641da4450 | Shell | 3,448 | 112 | # This script runs first step to making GeneNetwork: remove duplicate samples
set -e
set -u
project_dir=
outfile=
config_templates=
expression_file=
github_dir=
main(){
module load Java/1.8.0_144-unlimited_JCE
parse_commandline "$@"
rsync -vP $config_templates/2_config_RemoveDuplicates.json $project_dir/... |
d6b522fc8346ed10ad4020f9a67f1dbe21b80f5f154b442af6d77fcc15843702 | Shell | 3,450 | 120 | #!/usr/bin/env bash
# Copyright 2014 (author: Ahmed Ali, Hainan Xu)
# Copyright 2016 Johns Hopkins Univeersity (author: Jan "Yenda" Trmal)
# Apache 2.0
echo $0 "$@"
export LC_ALL=C
galeData=$(utils/make_absolute.sh "${@: -1}" );
length=$(($#-1))
args=${@:1:$length}
top_pwd=`pwd`
txtdir=$galeData/txt
mkdir -p $txtd... |
f71b162d441215f8e43948b6464877fbb1a0cc6d43b63bb7c4050fe91ae4235b | Shell | 3,460 | 95 | #!/usr/bin/env bash
# Copyright 2013 Arnab Ghoshal
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# THIS CODE IS PROVIDED *AS IS* BASIS, WI... |
83279fdae50cfd8e87cd092f74d29c937230c599a4eae1cecb53ab1d2467ce6b | Shell | 3,461 | 96 | #!/usr/bin/env bash
# Copyright 2012 Johns Hopkins University (author: Daniel Povey) Tony Robinson
# 2017 Hainan Xu
# 2017 Ke Li
# 2-layer LSTM hidden 200:
# rnnlm/train_rnnlm.sh: best iteration (out of 18) was 10, linking it to final iteration.
# Train objf: -620.20 -4.49 -4.33 -4.21 -4.13 -4... |
b11ed545ac1da2ccc2bf2aebf6a194549b81773f247a349050a1d2b0954dabd3 | Shell | 3,461 | 136 | #!/usr/bin/env bash
# shellcheck source=../utils.sh
source $( cd -- "$(dirname "$0")" >/dev/null 2>&1 ; pwd -P )/../utils.sh
# Check if there is input
[[ ( $# -eq 0 ) ]] && displayhelp $0 1
# Preparing the default values for variables
tmp=.
### print input
printline=$( basename -- $0 )
echo "${printline}" "$@"
# Pa... |
6d4c03d51d6d14d54310db6c5c0b1f8baa90d42212191a61cf40cf6097e459cf | Shell | 3,469 | 92 | #!/usr/bin/env bash
# To be run from one directory above this script.
text=data/local/train/text
lexicon=data/local/dict/lexicon.txt
for f in "$text" "$lexicon"; do
[ ! -f $x ] && echo "$0: No such file $f" && exit 1;
done
# This script takes no arguments. It assumes you have already run
# swbd_p1_data_prep.sh... |
596e06b8f7e343dfb22dd2a9b9f269ae113aaa9afe5502084413838538ce7fbc | Shell | 3,472 | 92 | #!/usr/bin/env bash
# To be run from one directory above this script.
text=data/local/train/text
lexicon=data/local/dict/lexicon.txt
for f in "$text" "$lexicon"; do
[ ! -f $x ] && echo "$0: No such file $f" && exit 1;
done
# This script takes no arguments. It assumes you have already run
# aidatatang_data_prep... |
95f623c06ff9f71530b947116102fdc1effc530c791045975f1471c6b0386b30 | Shell | 3,473 | 92 | #!/usr/bin/env bash
# This script creates the parallel data dir based on ihm data,
# creates speed perturbed versions of this parallel data
# and generates the corresponding alignments.
# The parallel data dir has segment ids from distant microphone data
# but the wav data is copied from ihm.
mic=sdm1
new_mic=sdm1_cl... |
39388e938fea3441bd05306271686e8eef624dd30ce29223201e3caa18c6fcfd | Shell | 3,483 | 126 | #!/bin/bash
# Copyright 2022 Huawei Technologies Co., Ltd
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law ... |
b8f28a40cde2b7ea98da506724a817748a4966bd962f47168dccd4eb871cf778 | Shell | 3,496 | 133 | #!/usr/bin/env bash
# Copyright 2015 University of Sheffield (Author: Ning Ma)
# Apache 2.0.
#
# Kaldi baseline for CHiME Challenge I/II (GRID corpus)
. ./cmd.sh
. ./path.sh # Needed for KALDI_ROOT
. ./config.sh # Needed for REC_ROOT and WAV_ROOT
# Check wave file directory
if [ ! -d $WAV_ROOT ]; then
echo "Canno... |
f3cef1479c91f086cb31f6329741864206df2d1ea6e552df6025595082520735 | Shell | 3,500 | 97 | #!/usr/bin/env bash
# Copyright 2014 Pegah Ghahremani
# 2014 Johns Hopkins (Yenda Trmal)
# Apache 2.0
# This script builds the SGMM system on top of the kaldi internal bottleneck features.
# It comes after run-6-bnf-semisupervised.sh.
. conf/common_vars.sh
. ./lang.conf
[ -f local.conf ] && . ./local.c... |
6fb2ca213157d7c1cb2294b0cc48d4cd0e5cecc0d8e4171684d9d2a2d5d76844 | Shell | 3,501 | 106 | #!/usr/bin/env bash
# Copyright 2014, University of Edinburgh (Author: Pawel Swietojanski, Jonathan Kilgour)
# Copyright 2015, Brno University of Technology (Author: Karel Vesely)
mics=
. utils/parse_options.sh
if [ $# -ne 2 ]; then
echo "Usage: $0 <mic> <ami-dir>"
echo " where <mic> is either ihm, sdm or mdm a... |
ac988f2e4bf65064acdb5e6f51914fb150ef68561db448908a7c083348c82208 | Shell | 3,504 | 120 |
# This script runs 3rd step to making GeneNetwork: quantile normalisation before PCA
set -e
set -u
project_dir=
outdir=
config_templates=
jardir=
expression_file=
main(){
module load Java/1.8.0_144-unlimited_JCE
parse_commandline "$@"
rsync -vP $config_templates/3_PCA_on_quantNormalizedData.json $projec... |
9156ee9d44a02f9efa73af5fdb12cbe52b1ae023f48fa1c12381cb23babfdf61 | Shell | 3,506 | 118 | #!/usr/bin/env bash
# Copyright (c) 2015, Johns Hopkins University (Yenda Trmal <jtrmal@gmail.com>)
# License: Apache 2.0
# Begin configuration section.
flen=0.01
icu_transform="Any-Lower"
# End configuration section
set -e -o pipefail
set -o nounset # Treat unset variables as an error
i... |
4abf111ec06b92751e5a31ca2c5eef270c56b79eb8eabf738b291571578a8059 | Shell | 3,508 | 77 | #!/usr/bin/env bash
# Copyright Johns Hopkins University 2013 (author: Daniel Povey)
# Apache 2.0.
if [ $# -ne 7 ]; then
echo "Usage: get_syllable_text.sh <data> <lang> <syllable-lang-nopos> <word2syllable-fst> <ali-dir> <tempdir> <tgt-data>"
echo "e.g.: get_syllable_text.sh data/train data/lang ../s5-vietnamese-... |
38c79f453e3cddb34a872d375ceb52e4614fec6c71aa3e792403d1ebb6c64266 | Shell | 3,523 | 109 | #!/bin/bash
export slow5tools=$HOME/DeepSelectNet/tools/slow5tools-v0.3.0/slow5tools
export minimap2=$HOME/DeepSelectNet/tools/minimap2/minimap2
POS_SLOW5=$1
NEG_SLOW5=$2
POS_FASTQ=$3
NEG_FASTQ=$4
POS_REF=$5
NEG_REF=$6
BASE_LENGTH=$7
POS_READ_IDS='read-ids-pos.txt'
NEG_READ_IDS='read-ids-neg.txt'
MIXED_REF='mixed-ref... |
8e9ce7905d2a83f88228a9ca3b5ea6f1931651716077044a255f85796fd23a1c | Shell | 3,524 | 109 | #!/usr/bin/env bash
# Copyright 2013-2014 Johns Hopkins University (authors: Jan Trmal, Guoguo Chen, Dan Povey)
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/lic... |
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