PDB_ID_chain stringlengths 6 10 | PDB_ID stringlengths 4 4 | Title stringlengths 4 230 | Mutation(s) stringclasses 2
values | Classification stringclasses 305
values | Deposit_date stringdate 1976-03-17 00:00:00 2026-01-20 00:00:00 | Release_date stringdate 1976-05-19 00:00:00 2026-02-25 00:00:00 | Method stringclasses 5
values | Resolution stringclasses 459
values | R_free stringclasses 227
values | R_work stringclasses 211
values | PMID stringlengths 4 8 | DOI stringlengths 4 68 | Model_index int64 0 76 | Asym_ID_type stringclasses 2
values | Ab_type stringclasses 30
values | H_subgroup stringclasses 8
values | L_subgroup stringclasses 19
values | H_chain_ID stringclasses 60
values | L_chain_ID stringclasses 58
values | H_fas_seq stringlengths 4 919 | L_fas_seq stringlengths 4 627 | H_filled_pdb_seq stringlengths 4 896 | L_filled_pdb_seq stringlengths 4 523 | H_mean_radius float64 0 79.7 | L_mean_radius float64 0 84.3 | H_fas_seq_len int64 0 919 | L_fas_seq_len int64 0 627 | H_pdb_seq_len int64 0 879 | L_pdb_seq_len int64 0 523 | H_filled_seq_len int64 0 896 | L_filled_seq_len int64 0 523 | HL_inf_res_num int64 0 175 | H_mol_name stringlengths 2 331 | L_mol_name stringlengths 2 151 | H_species stringclasses 68
values | L_species stringclasses 42
values | Ag_chain_ID(s) stringclasses 279
values | Ag_type(s) stringclasses 16
values | Ag_mol_name(s) stringlengths 2 390 | Ag_species stringclasses 743
values | Ab_ag_inf_res_num stringlengths 1 11 | CDR_inf_res_num stringclasses 444
values | CDR_inf_res_ratio stringlengths 1 19 | hl_label stringclasses 3
values | split stringclasses 1
value |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
9fve_J | 9fve | crystal structure of vcsiap w73a mutant in complex with sialic acid and a vhh antibody (vhh_vcp#2) | yes | transport protein | 2024-06-26 | 2024-11-06 | x-ray diffraction | 2.81 | 0.267 | 0.234 | 39580575 | 10.1038/s42003-024-07263-6 | 0 | auth_asym_id | VHH | IGHV3 | N.A. | J | N.A. | GSQVQLVESGGRLVQTGGSLRLSCAASGDTFSNYVMGWFRQAPGKEREFVAAISWTGANSYYADSVAGRFTISRDNAKNTVALQMNSLKPEDTAIYYCAADHFHVTHRKYDYWGQGTQVTVSS | N.A. | GSQVQLVESGGRLVQTGGSLRLSCAASGDTFSNYVMGWFRQAPGKEREFVAAISWTGANSYYADSVAGRFTISRDNAKNTVALQMNSLKPEDTAIYYCAADHFHVTHRKYDYWGQGTQVTVSS | N.A. | 13.658114 | 0 | 123 | 0 | 123 | 0 | 123 | 0 | 0 | vhh_vcp#2 | N.A. | vicugna pacos | N.A. | I | protein | sialic acid-binding periplasmic protein siap | vicugna pacos | 32 | 13 | 0.76 | H_only | train |
9fve_L | 9fve | crystal structure of vcsiap w73a mutant in complex with sialic acid and a vhh antibody (vhh_vcp#2) | yes | transport protein | 2024-06-26 | 2024-11-06 | x-ray diffraction | 2.81 | 0.267 | 0.234 | 39580575 | 10.1038/s42003-024-07263-6 | 0 | auth_asym_id | VHH | IGHV3 | N.A. | L | N.A. | GSQVQLVESGGRLVQTGGSLRLSCAASGDTFSNYVMGWFRQAPGKEREFVAAISWTGANSYYADSVAGRFTISRDNAKNTVALQMNSLKPEDTAIYYCAADHFHVTHRKYDYWGQGTQVTVSS | N.A. | GSQVQLVESGGRLVQTGGSLRLSCAASGDTFSNYVMGWFRQAPGKEREFVAAISWTGANSYYADSVAGRFTISRDNAKNTVALQMNSLKPEDTAIYYCAADHFHVTHRKYDYWGQGTQVTVSS | N.A. | 13.647706 | 0 | 123 | 0 | 123 | 0 | 123 | 0 | 0 | vhh_vcp#2 | N.A. | vicugna pacos | N.A. | K | protein | sialic acid-binding periplasmic protein siap | vicugna pacos | 34 | 13 | 0.76 | H_only | train |
9fve_N | 9fve | crystal structure of vcsiap w73a mutant in complex with sialic acid and a vhh antibody (vhh_vcp#2) | yes | transport protein | 2024-06-26 | 2024-11-06 | x-ray diffraction | 2.81 | 0.267 | 0.234 | 39580575 | 10.1038/s42003-024-07263-6 | 0 | auth_asym_id | VHH | IGHV3 | N.A. | N | N.A. | GSQVQLVESGGRLVQTGGSLRLSCAASGDTFSNYVMGWFRQAPGKEREFVAAISWTGANSYYADSVAGRFTISRDNAKNTVALQMNSLKPEDTAIYYCAADHFHVTHRKYDYWGQGTQVTVSS | N.A. | GSQVQLVESGGRLVQTGGSLRLSCAASGDTFSNYVMGWFRQAPGKEREFVAAISWTGANSYYADSVAGRFTISRDNAKNTVALQMNSLKPEDTAIYYCAADHFHVTHRKYDYWGQGTQVTVSS | N.A. | 13.61579 | 0 | 123 | 0 | 123 | 0 | 123 | 0 | 0 | vhh_vcp#2 | N.A. | vicugna pacos | N.A. | M | protein | sialic acid-binding periplasmic protein siap | vicugna pacos | 32 | 13 | 0.76 | H_only | train |
9fve_P | 9fve | crystal structure of vcsiap w73a mutant in complex with sialic acid and a vhh antibody (vhh_vcp#2) | yes | transport protein | 2024-06-26 | 2024-11-06 | x-ray diffraction | 2.81 | 0.267 | 0.234 | 39580575 | 10.1038/s42003-024-07263-6 | 0 | auth_asym_id | VHH | IGHV3 | N.A. | P | N.A. | GSQVQLVESGGRLVQTGGSLRLSCAASGDTFSNYVMGWFRQAPGKEREFVAAISWTGANSYYADSVAGRFTISRDNAKNTVALQMNSLKPEDTAIYYCAADHFHVTHRKYDYWGQGTQVTVSS | N.A. | GSQVQLVESGGRLVQTGGSLRLSCAASGDTFSNYVMGWFRQAPGKEREFVAAISWTGANSYYADSVAGRFTISRDNAKNTVALQMNSLKPEDTAIYYCAADHFHVTHRKYDYWGQGTQVTVSS | N.A. | 13.602542 | 0 | 123 | 0 | 123 | 0 | 123 | 0 | 0 | vhh_vcp#2 | N.A. | vicugna pacos | N.A. | O | protein | sialic acid-binding periplasmic protein siap | vicugna pacos | 32 | 12 | 0.75 | H_only | train |
9fve_R | 9fve | crystal structure of vcsiap w73a mutant in complex with sialic acid and a vhh antibody (vhh_vcp#2) | yes | transport protein | 2024-06-26 | 2024-11-06 | x-ray diffraction | 2.81 | 0.267 | 0.234 | 39580575 | 10.1038/s42003-024-07263-6 | 0 | auth_asym_id | VHH | IGHV3 | N.A. | R | N.A. | GSQVQLVESGGRLVQTGGSLRLSCAASGDTFSNYVMGWFRQAPGKEREFVAAISWTGANSYYADSVAGRFTISRDNAKNTVALQMNSLKPEDTAIYYCAADHFHVTHRKYDYWGQGTQVTVSS | N.A. | GSQVQLVESGGRLVQTGGSLRLSCAASGDTFSNYVMGWFRQAPGKEREFVAAISWTGANSYYADSVAGRFTISRDNAKNTVALQMNSLKPEDTAIYYCAADHFHVTHRKYDYWGQGTQVTVSS | N.A. | 13.64223 | 0 | 123 | 0 | 123 | 0 | 123 | 0 | 0 | vhh_vcp#2 | N.A. | vicugna pacos | N.A. | Q | protein | sialic acid-binding periplasmic protein siap | vicugna pacos | 32 | 14 | 0.78 | H_only | train |
9fve_V | 9fve | crystal structure of vcsiap w73a mutant in complex with sialic acid and a vhh antibody (vhh_vcp#2) | yes | transport protein | 2024-06-26 | 2024-11-06 | x-ray diffraction | 2.81 | 0.267 | 0.234 | 39580575 | 10.1038/s42003-024-07263-6 | 0 | auth_asym_id | VHH | IGHV3 | N.A. | V | N.A. | GSQVQLVESGGRLVQTGGSLRLSCAASGDTFSNYVMGWFRQAPGKEREFVAAISWTGANSYYADSVAGRFTISRDNAKNTVALQMNSLKPEDTAIYYCAADHFHVTHRKYDYWGQGTQVTVSS | N.A. | GSQVQLVESGGRLVQTGGSLRLSCAASGDTFSNYVMGWFRQAPGKEREFVAAISWTGANSYYADSVAGRFTISRDNAKNTVALQMNSLKPEDTAIYYCAADHFHVTHRKYDYWGQGTQVTVSS | N.A. | 13.591014 | 0 | 123 | 0 | 123 | 0 | 123 | 0 | 0 | vhh_vcp#2 | N.A. | vicugna pacos | N.A. | U | protein | sialic acid-binding periplasmic protein siap | vicugna pacos | 30 | 13 | 0.81 | H_only | train |
9fve_X | 9fve | crystal structure of vcsiap w73a mutant in complex with sialic acid and a vhh antibody (vhh_vcp#2) | yes | transport protein | 2024-06-26 | 2024-11-06 | x-ray diffraction | 2.81 | 0.267 | 0.234 | 39580575 | 10.1038/s42003-024-07263-6 | 0 | auth_asym_id | VHH | IGHV3 | N.A. | X | N.A. | GSQVQLVESGGRLVQTGGSLRLSCAASGDTFSNYVMGWFRQAPGKEREFVAAISWTGANSYYADSVAGRFTISRDNAKNTVALQMNSLKPEDTAIYYCAADHFHVTHRKYDYWGQGTQVTVSS | N.A. | GSQVQLVESGGRLVQTGGSLRLSCAASGDTFSNYVMGWFRQAPGKEREFVAAISWTGANSYYADSVAGRFTISRDNAKNTVALQMNSLKPEDTAIYYCAADHFHVTHRKYDYWGQGTQVTVSS | N.A. | 13.6738 | 0 | 123 | 0 | 123 | 0 | 123 | 0 | 0 | vhh_vcp#2 | N.A. | vicugna pacos | N.A. | W | protein | sialic acid-binding periplasmic protein siap | vicugna pacos | 33 | 13 | 0.76 | H_only | train |
9fve_T | 9fve | crystal structure of vcsiap w73a mutant in complex with sialic acid and a vhh antibody (vhh_vcp#2) | yes | transport protein | 2024-06-26 | 2024-11-06 | x-ray diffraction | 2.81 | 0.267 | 0.234 | 39580575 | 10.1038/s42003-024-07263-6 | 0 | auth_asym_id | VHH | IGHV3 | N.A. | T | N.A. | GSQVQLVESGGRLVQTGGSLRLSCAASGDTFSNYVMGWFRQAPGKEREFVAAISWTGANSYYADSVAGRFTISRDNAKNTVALQMNSLKPEDTAIYYCAADHFHVTHRKYDYWGQGTQVTVSS | N.A. | GSQVQLVESGGRLVQTGGSLRLSCAASGDTFSNYVMGWFRQAPGKEREFVAAISWTGANSYYADSVAGRFTISRDNAKNTVALQMNSLKPEDTAIYYCAADHFHVTHRKYDYWGQGTQVTVSS | N.A. | 13.63287 | 0 | 123 | 0 | 123 | 0 | 123 | 0 | 0 | vhh_vcp#2 | N.A. | vicugna pacos | N.A. | Y | protein | sialic acid-binding periplasmic protein siap | vicugna pacos | 33 | 13 | 0.76 | H_only | train |
9ik8_E | 9ik8 | cryo-em structure of sstr1-gi sst analogs complex | no | membrane protein | 2024-06-26 | 2025-04-30 | electron microscopy | 2.82 | N.A. | N.A. | 40487642 | 10.1016/j.apsb.2025.03.043 | 0 | auth_asym_id | scFv | N.A. | N.A. | E | N.A. | VQLVESGGGLVQPGGSRKLSCSASGFAFSSFGMHWVRQAPEKGLEWVAYISSGSGTIYYADTVKGRFTISRDDPKNTLFLQMTSLRSEDTAMYYCVRSIYYYGSSPFDFWGQGTTLTVSSGGGGSGGGGSGGGGSDIVMTQATSSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLTISRLEAEDVGVYYCMQHLEYPLTFGAGTKLELSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLTISRLEAEDVGVYYC... | N.A. | VQLVESGGGLVQPGGSRKLSCSASGFAFSSFGMHWVRQAPEKGLEWVAYISSGSGTIYYADTVKGRFTISRDDPKNTLFLQMTSLRSEDTAMYYCVRSIYYYGSSPFDFWGQGTTLTVSSGGGGSGGGGSGGGGSDIVMTQATSSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLTISRLEAEDVGVYYCMQHLEYPLTFGAGTKLEL | N.A. | 17.260519 | 0 | 338 | 0 | 232 | 0 | 246 | 0 | 0 | scfv16 | N.A. | synthetic construct | N.A. | B;A | protein;protein | guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1;guanine nucleotide-binding protein g(i) subunit alpha-1 | homo sapiens;homo sapiens | 25;38 | 11;23 | 0.85;0.85 | H_only | train |
9cf6_H_L | 9cf6 | germline-targeting hiv-1 gp120 engineered outer domain eodgt8 in complex with fab eod-cl02.1 | no | immune system | 2024-06-27 | 2025-06-25 | x-ray diffraction | 2.7 | 0.306 | 0.276 | N.A. | N.A. | 0 | auth_asym_id | FabH:FabL | IGHV3 | IGLV2 | H | L | EVQLVESGGGLVQSGGSLRLSCAASGFTFSSYNMNWVRQAPGKGLEWVSYISYSSNTIYYADSVKGRFTVSRDNAKNSLYLQMNSLRDEDTAVYYCARDGAAALFDYWGQGILVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC | QSALTQPASVSGSPGQSITISCTGTSSDVGDYNYVSWYQQHPGKAPKLMIFEVSNRPSGVSNRFSGSKSGNTASLTISGLQTEDEADYYCSSYTSSSSLVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS | EVQLVESGGGLVQSGGSLRLSCAASGFTFSSYNMNWVRQAPGKGLEWVSYISYSSNTIYYADSVKGRFTVSRDNAKNSLYLQMNSLRDEDTAVYYCARDGAAALFDYWGQGILVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEP | ALTQPASVSGSPGQSITISCTGTSSDVGDYNYVSWYQQHPGKAPKLMIFEVSNRPSGVSNRFSGSKSGNTASLTISGLQTEDEADYYCSSYTSSSSLVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTEC | 23.406841 | 21.411121 | 221 | 216 | 213 | 213 | 218 | 213 | 87 | fab eod-cl02.1 heavy chain | fab eod-cl02.1 lambda light chain | homo sapiens | homo sapiens | G | protein | germline-targeting hiv-1 gp120 engineered outer domain eodgt8 | human immunodeficiency virus 1 | 39 | 16 | 0.8 | HL | train |
9cf7_H_L | 9cf7 | germline-targeting hiv-1 gp120 engineered outer domain eodgt8 in complex with fab eod-pl01.1 | no | immune system | 2024-06-27 | 2025-06-25 | x-ray diffraction | 3.55 | 0.299 | 0.265 | N.A. | N.A. | 0 | auth_asym_id | FabH:FabL | IGHV4 | IGKV1 | H | L | QVQLQESGPGLVEPSGTLSLTCAVSGGSISSTNWWTWVRQTPGTGLEWIGEIHHSGITNYNPSLKSRVTISVDKSKNQFSLKLSSVIAADTAAYYCARGDDILTGYNYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC | DIQMTQSPSSLSASVGDRVSITCRASQNIINYLNWYQQKPGKAPKLLINAASSLQSGVPSRVSGSGSGTDFTLTISSLQSEDFATYYCQQSHSTPPTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | QVQLQESGPGLVEPSGTLSLTCAVSGGSISSTNWWTWVRQTPGTGLEWIGEIHHSGITNYNPSLKSRVTISVDKSKNQFSLKLSSVIAADTAAYYCARGDDILTGYNYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK | DIQMTQSPSSLSASVGDRVSITCRASQNIINYLNWYQQKPGKAPKLLINAASSLQSGVPSRVSGSGSGTDFTLTISSLQSEDFATYYCQQSHSTPPTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRG | 20.7307 | 23.136822 | 222 | 214 | 214 | 212 | 220 | 212 | 85 | fab eod-pl01.1 heavy chain | fab eod-pl01.1 kappa light chain | homo sapiens | homo sapiens | C | protein | germline-targeting hiv-1 gp120 engineered outer domain eodgt8 | human immunodeficiency virus 1 | 37 | 17 | 0.81 | HL | train |
9cfa_H_L | 9cfa | germline-targeting hiv-1 gp120 engineered outer domain eodgt8 in complex with fab eod-cl04.1 | no | immune system | 2024-06-27 | 2025-06-25 | x-ray diffraction | 3.06 | 0.259 | 0.224 | N.A. | N.A. | 0 | auth_asym_id | FabH:FabL | IGHV3 | IGLV7 | H | L | EVQLVESGGGLVEPGGSLRLSCAASGFNFSNYGMNWVRQAPGKGLECISYISGSSSTKYYADSVKGRFTISRDNAKNSLYLQMNSLRDEDTAVYYCARDHWGLDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC | QTVVTQEPSLTVSPGGTVTLTCASSTGAVTSGFYPSWFQQKPGQTPRTLIYSTNNKHSWTPARFSGSLLGGKAALTLSGVQPEDEADYYCLLYYGGVWVFGGGTRLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS | EVQLVESGGGLVEPGGSLRLSCAASGFNFSNYGMNWVRQAPGKGLECISYISGSSSTKYYADSVKGRFTISRDNAKNSLYLQMNSLRDEDTAVYYCARDHWGLDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK | TVVTQEPSLTVSPGGTVTLTCASSTGAVTSGFYPSWFQQKPGQTPRTLIYSTNNKHSWTPARFSGSLLGGKAALTLSGVQPEDEADYYCLLYYGGVWVFGGGTRLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS | 20.61821 | 23.828402 | 219 | 215 | 217 | 214 | 217 | 214 | 99 | fab eod-cl04.1 heavy chain | fab eod-cl04.1 lambda light chain | homo sapiens | homo sapiens | C | protein | germline-targeting hiv-1 gp120 engineered outer domain eodgt8 | human immunodeficiency virus 1 | 48 | 19 | 0.73 | HL | train |
9cfa_B_A | 9cfa | germline-targeting hiv-1 gp120 engineered outer domain eodgt8 in complex with fab eod-cl04.1 | no | immune system | 2024-06-27 | 2025-06-25 | x-ray diffraction | 3.06 | 0.259 | 0.224 | N.A. | N.A. | 0 | auth_asym_id | FabH:FabL | IGHV3 | IGLV7 | B | A | EVQLVESGGGLVEPGGSLRLSCAASGFNFSNYGMNWVRQAPGKGLECISYISGSSSTKYYADSVKGRFTISRDNAKNSLYLQMNSLRDEDTAVYYCARDHWGLDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC | QTVVTQEPSLTVSPGGTVTLTCASSTGAVTSGFYPSWFQQKPGQTPRTLIYSTNNKHSWTPARFSGSLLGGKAALTLSGVQPEDEADYYCLLYYGGVWVFGGGTRLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS | EVQLVESGGGLVEPGGSLRLSCAASGFNFSNYGMNWVRQAPGKGLECISYISGSSSTKYYADSVKGRFTISRDNAKNSLYLQMNSLRDEDTAVYYCARDHWGLDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK | TVVTQEPSLTVSPGGTVTLTCASSTGAVTSGFYPSWFQQKPGQTPRTLIYSTNNKHSWTPARFSGSLLGGKAALTLSGVQPEDEADYYCLLYYGGVWVFGGGTRLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS | 20.583006 | 23.879301 | 219 | 215 | 217 | 214 | 217 | 214 | 99 | fab eod-cl04.1 heavy chain | fab eod-cl04.1 lambda light chain | homo sapiens | homo sapiens | D | protein | germline-targeting hiv-1 gp120 engineered outer domain eodgt8 | human immunodeficiency virus 1 | 46 | 18 | 0.72 | HL | train |
9cfa_F_E | 9cfa | germline-targeting hiv-1 gp120 engineered outer domain eodgt8 in complex with fab eod-cl04.1 | no | immune system | 2024-06-27 | 2025-06-25 | x-ray diffraction | 3.06 | 0.259 | 0.224 | N.A. | N.A. | 0 | auth_asym_id | FabH:FabL | IGHV3 | IGLV7 | F | E | EVQLVESGGGLVEPGGSLRLSCAASGFNFSNYGMNWVRQAPGKGLECISYISGSSSTKYYADSVKGRFTISRDNAKNSLYLQMNSLRDEDTAVYYCARDHWGLDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC | QTVVTQEPSLTVSPGGTVTLTCASSTGAVTSGFYPSWFQQKPGQTPRTLIYSTNNKHSWTPARFSGSLLGGKAALTLSGVQPEDEADYYCLLYYGGVWVFGGGTRLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS | EVQLVESGGGLVEPGGSLRLSCAASGFNFSNYGMNWVRQAPGKGLECISYISGSSSTKYYADSVKGRFTISRDNAKNSLYLQMNSLRDEDTAVYYCARDHWGLDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK | TVVTQEPSLTVSPGGTVTLTCASSTGAVTSGFYPSWFQQKPGQTPRTLIYSTNNKHSWTPARFSGSLLGGKAALTLSGVQPEDEADYYCLLYYGGVWVFGGGTRLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS | 20.167063 | 23.8519 | 219 | 215 | 211 | 214 | 217 | 214 | 97 | fab eod-cl04.1 heavy chain | fab eod-cl04.1 lambda light chain | homo sapiens | homo sapiens | G | protein | germline-targeting hiv-1 gp120 engineered outer domain eodgt8 | human immunodeficiency virus 1 | 45 | 16 | 0.7 | HL | train |
9cfg_H_L | 9cfg | cryo-em refinement of antibody 19-77 r71v in complex with sars-cov-2 hk.3 rbd | yes | viral protein/immune system | 2024-06-27 | 2025-07-02 | electron microscopy | 2.9 | N.A. | N.A. | 40615407 | 10.1038/s41467-025-61472-z | 0 | auth_asym_id | VH:VL | IGHV3 | IGKV3 | H | L | EVQVVESGGGLIQPGGSLRLSCTASELIISRNYMSWVRQAPGKGLEWLSVIYPGGSSFYTDSLKGRFTISVDNSKNTLYLQMNRLGVEDTAIYYCVRDAPSESDWGQGTLVTVSS | EIVLTQSPATLSLFPGERATLSCRASQNIGHFLTWYQQKPGQAPRLLIYDASNRATGVPARFSGSGSETEFTLTISSLGPEDFAVYYCQERSDWPRGTFGQGTKVEIK | EVQVVESGGGLIQPGGSLRLSCTASELIISRNYMSWVRQAPGKGLEWLSVIYPGGSSFYTDSLKGRFTISVDNSKNTLYLQMNRLGVEDTAIYYCVRDAPSESDWGQGTLVTVSS | EIVLTQSPATLSLFPGERATLSCRASQNIGHFLTWYQQKPGQAPRLLIYDASNRATGVPARFSGSGSETEFTLTISSLGPEDFAVYYCQERSDWPRGTFGQGTKVEIK | 13.430479 | 13.127337 | 115 | 108 | 115 | 108 | 115 | 108 | 46 | heavy chain | light chain | homo sapiens | homo sapiens | A | protein | spike protein s1 | severe acute respiratory syndrome coronavirus 2 | 61 | 24 | 0.75 | HL | train |
9cfh_H_L | 9cfh | cryo-em refinement of antibody 19-77 r71v in complex with sars-cov-2 jd.1.1 rbd | yes | viral protein/immune system | 2024-06-27 | 2025-07-02 | electron microscopy | 3.1 | N.A. | N.A. | 40615407 | 10.1038/s41467-025-61472-z | 0 | auth_asym_id | VH:VL | IGHV3 | IGKV3 | H | L | EVQVVESGGGLIQPGGSLRLSCTASELIISRNYMSWVRQAPGKGLEWLSVIYPGGSSFYTDSLKGRFTISVDNSKNTLYLQMNRLGVEDTAIYYCVRDAPSESDWGQGTLVTVSS | EIVLTQSPATLSLFPGERATLSCRASQNIGHFLTWYQQKPGQAPRLLIYDASNRATGVPARFSGSGSETEFTLTISSLGPEDFAVYYCQERSDWPRGTFGQGTKVEIK | EVQVVESGGGLIQPGGSLRLSCTASELIISRNYMSWVRQAPGKGLEWLSVIYPGGSSFYTDSLKGRFTISVDNSKNTLYLQMNRLGVEDTAIYYCVRDAPSESDWGQGTLVTVSS | EIVLTQSPATLSLFPGERATLSCRASQNIGHFLTWYQQKPGQAPRLLIYDASNRATGVPARFSGSGSETEFTLTISSLGPEDFAVYYCQERSDWPRGTFGQGTKVEIK | 13.470226 | 13.295626 | 115 | 108 | 115 | 108 | 115 | 108 | 44 | heavy chain | light chain | homo sapiens | homo sapiens | A | protein | spike protein s1 | severe acute respiratory syndrome coronavirus 2 | 58 | 22 | 0.79 | HL | train |
9fvk_A | 9fvk | crystal structure of amyloidogenic light chain al-55 in open conformation. | no | immune system | 2024-06-27 | 2025-07-09 | x-ray diffraction | 2.64 | 0.225 | 0.194 | 39842712 | 10.1016/j.jmb.2025.168958 | 0 | auth_asym_id | FabL | N.A. | IGLV6 | N.A. | A | N.A. | NFMLTQPHSVSESPGKTLTISCTGSSASIASHYVQWYQQRPGGAPTTLIYENDQRPSEVPDRFSGSIDSSSNSASLTISGLKTEDEADYYCQSYDGNNHWVFGGGTKLTVLSQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHKSYSCQVTHEGSTVEKTVAPTECS | N.A. | NFMLTQPHSVSESPGKTLTISCTGSSASIASHYVQWYQQRPGGAPTTLIYENDQRPSEVPDRFSGSIDSSSNSASLTISGLKTEDEADYYCQSYDGNNHWVFGGGTKLTVLSQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHKSYSCQVTHEGSTVEKTVAPTEC | 0 | 21.575157 | 0 | 217 | 0 | 216 | 0 | 216 | 0 | N.A. | al55 | N.A. | homo sapiens | N.A. | N.A. | N.A. | N.A. | 0 | 0 | 0 | L_only | train |
9fvk_B | 9fvk | crystal structure of amyloidogenic light chain al-55 in open conformation. | no | immune system | 2024-06-27 | 2025-07-09 | x-ray diffraction | 2.64 | 0.225 | 0.194 | 39842712 | 10.1016/j.jmb.2025.168958 | 0 | auth_asym_id | FabL | N.A. | IGLV6 | N.A. | B | N.A. | NFMLTQPHSVSESPGKTLTISCTGSSASIASHYVQWYQQRPGGAPTTLIYENDQRPSEVPDRFSGSIDSSSNSASLTISGLKTEDEADYYCQSYDGNNHWVFGGGTKLTVLSQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHKSYSCQVTHEGSTVEKTVAPTECS | N.A. | NFMLTQPHSVSESPGKTLTISCTGSSASIASHYVQWYQQRPGGAPTTLIYENDQRPSEVPDRFSGSIDSSSNSASLTISGLKTEDEADYYCQSYDGNNHWVFGGGTKLTVLSQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHKSYSCQVTHEGSTVEKTVAPTEC | 0 | 20.95758 | 0 | 217 | 0 | 216 | 0 | 216 | 0 | N.A. | al55 | N.A. | homo sapiens | N.A. | N.A. | N.A. | N.A. | 0 | 0 | 0 | L_only | train |
9fvk_C | 9fvk | crystal structure of amyloidogenic light chain al-55 in open conformation. | no | immune system | 2024-06-27 | 2025-07-09 | x-ray diffraction | 2.64 | 0.225 | 0.194 | 39842712 | 10.1016/j.jmb.2025.168958 | 0 | auth_asym_id | FabL | N.A. | IGLV6 | N.A. | C | N.A. | NFMLTQPHSVSESPGKTLTISCTGSSASIASHYVQWYQQRPGGAPTTLIYENDQRPSEVPDRFSGSIDSSSNSASLTISGLKTEDEADYYCQSYDGNNHWVFGGGTKLTVLSQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHKSYSCQVTHEGSTVEKTVAPTECS | N.A. | NFMLTQPHSVSESPGKTLTISCTGSSASIASHYVQWYQQRPGGAPTTLIYENDQRPSEVPDRFSGSIDSSSNSASLTISGLKTEDEADYYCQSYDGNNHWVFGGGTKLTVLSQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHKSYSCQVTHEGSTVEKTVAPTEC | 0 | 21.525442 | 0 | 217 | 0 | 216 | 0 | 216 | 0 | N.A. | al55 | N.A. | homo sapiens | N.A. | N.A. | N.A. | N.A. | 0 | 0 | 0 | L_only | train |
9cfd_H_L | 9cfd | fab 8c1 in complex with ospca peptide p15 (residues 132-146) | no | immune system | 2024-06-27 | 2025-08-27 | x-ray diffraction | 1.64 | 0.189 | 0.161 | N.A. | N.A. | 0 | auth_asym_id | FabH:FabL | IGHV1 | IGKV2 | H | L | EVQLQQSGPELVKPGASVKISCKTSGYTFSNSWMNWVKQRPGQGLEWIGRIYPGDGDTNYNGKFKDKATLTTDKSSSTAYMRLSSLTSVDSAVYFCARSLFDYWGQGTTLTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDKTH | DVVMTQTPLTLSVTIGQPASISCKSSQSLLDSDGKTYLIWLLQRPGQSPKRLIYLVSKLDSGVPDRFTGSGSGTDFTLKISRVEAEDLGVYYCCQGTHFPFTFGVGTKLELKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | EVQLQQSGPELVKPGASVKISCKTSGYTFSNSWMNWVKQRPGQGLEWIGRIYPGDGDTNYNGKFKDKATLTTDKSSSTAYMRLSSLTSVDSAVYFCARSLFDYWGQGTTLTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPK | DVVMTQTPLTLSVTIGQPASISCKSSQSLLDSDGKTYLIWLLQRPGQSPKRLIYLVSKLDSGVPDRFTGSGSGTDFTLKISRVEAEDLGVYYCCQGTHFPFTFGVGTKLELKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE | 20.189692 | 24.048012 | 221 | 219 | 210 | 218 | 215 | 218 | 84 | monoclonal 8c1 fab heavy chain | monoclonal 8c1 fab light chain | homo sapiens | homo sapiens | P | peptide | outer surface protein c | borreliella burgdorferi b31 | 40 | 21 | 0.78 | HL | train |
9cgj_E | 9cgj | cryoem structure of delta opioid receptor bound to g proteins and a partial agonist | yes | membrane protein | 2024-06-29 | 2025-04-02 | electron microscopy | 2.8 | N.A. | N.A. | 40082451 | 10.1038/s41467-025-57734-5 | 0 | auth_asym_id | scFv | N.A. | N.A. | E | N.A. | DVQLVESGGGLVQPGGSRKLSCSASGFAFSSFGMHWVRQAPEKGLEWVAYISSGSGTIYYADTVKGRFTISRDDPKNTLFLQMTSLRSEDTAMYYCVRSIYYYGSSPFDFWGQGTTLTVSSGGGGSGGGGSGGGGSDIVMTQATSSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLTISRLEAEDVGVYYCMQHLEYPLTFGAGTKLELKAAA | N.A. | VQLVESGGGLVQPGGSRKLSCSASGFAFSSFGMHWVRQAPEKGLEWVAYISSGSGTIYYADTVKGRFTISRDDPKNTLFLQMTSLRSEDTAMYYCVRSIYYYGSSPFDFWGQGTTLTVSSGGGGSGGGGSGGGGSDIVMTQATSSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLTISRLEAEDVGVYYCMQHLEYPLTFGAGTKLEL | N.A. | 17.434223 | 0 | 251 | 0 | 232 | 0 | 246 | 0 | 0 | scfv16 protein | N.A. | mus musculus | N.A. | B;C | protein;protein | guanine nucleotide-binding protein g(i) subunit alpha-1;guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 | homo sapiens;homo sapiens | 31;25 | 19;11 | 0.9;0.85 | H_only | train |
9cgk_E | 9cgk | cryoem structure of delta opioid receptor bound to g proteins and a full bitopic agonist | yes | membrane protein | 2024-06-29 | 2025-04-02 | electron microscopy | 2.62 | N.A. | N.A. | 40082451 | 10.1038/s41467-025-57734-5 | 0 | auth_asym_id | scFv | N.A. | N.A. | E | N.A. | DVQLVESGGGLVQPGGSRKLSCSASGFAFSSFGMHWVRQAPEKGLEWVAYISSGSGTIYYADTVKGRFTISRDDPKNTLFLQMTSLRSEDTAMYYCVRSIYYYGSSPFDFWGQGTTLTVSSGGGGSGGGGSGGGGSDIVMTQATSSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLTISRLEAEDVGVYYCMQHLEYPLTFGAGTKLELKAAA | N.A. | VQLVESGGGLVQPGGSRKLSCSASGFAFSSFGMHWVRQAPEKGLEWVAYISSGSGTIYYADTVKGRFTISRDDPKNTLFLQMTSLRSEDTAMYYCVRSIYYYGSSPFDFWGQGTTLTVSSGGGGSGGGGSGGGGSDIVMTQATSSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLTISRLEAEDVGVYYCMQHLEYPLTFGAGTKLEL | N.A. | 17.392355 | 0 | 251 | 0 | 232 | 0 | 246 | 0 | 0 | scfv16 protein | N.A. | mus musculus | N.A. | C;B | protein;protein | guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1;guanine nucleotide-binding protein g(i) subunit alpha-1 | homo sapiens;homo sapiens | 25;33 | 11;20 | 0.85;0.91 | H_only | train |
9fww_B | 9fww | human nkp30 in complex with a vhh variant | no | immune system | 2024-07-01 | 2024-10-30 | x-ray diffraction | 1.84 | 0.208 | 0.199 | 39422475 | 10.1002/pro.5176 | 0 | auth_asym_id | VHH | IGHV3 | N.A. | B | N.A. | DVQLQESGGGLVQAGGSLRLSCAVSGQTWTNYHIGWFRQAPGKARESVASIEWGGRGTYATDSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCAAQSSSRSPLESNYDYWGQGTQVTVSSHHHHHHHH | N.A. | DVQLQESGGGLVQAGGSLRLSCAVSGQTWTNYHIGWFRQAPGKARESVASIEWGGRGTYATDSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCAAQSSSRSPLESNYDYWGQGTQVTVSS | N.A. | 13.787791 | 0 | 131 | 0 | 123 | 0 | 123 | 0 | 0 | vhh | N.A. | homo sapiens | N.A. | A | protein | natural cytotoxicity triggering receptor 3 | homo sapiens | 39 | 16 | 1 | H_only | train |
9fxf_A | 9fxf | vhh variant adression natural cytotoxicity triggering receptor 3 | no | immune system | 2024-07-01 | 2024-10-30 | x-ray diffraction | 1.07 | 0.206 | 0.193 | 39422475 | 10.1002/pro.5176 | 0 | auth_asym_id | VHH | IGHV3 | N.A. | A | N.A. | DVQLQESGGGLVQPGGSLRLSCATSGFTLDDYTIGWVRQAPGKEHEGVSCFSPSDGTTYYADSVKGRFTFSRDNAKNTVYLQMNSLKPEDTAVYYCAASFADGSSWCYDYWGQGTQVTVSSHHHHHHHH | N.A. | DVQLQESGGGLVQPGGSLRLSCATSGFTLDDYTIGWVRQAPGKEHEGVSCFSPSDGTTYYADSVKGRFTFSRDNAKNTVYLQMNSLKPEDTAVYYCAASFADGSSWCYDYWGQGTQVTVS | N.A. | 13.514154 | 0 | 129 | 0 | 120 | 0 | 120 | 0 | 0 | vhh | N.A. | homo sapiens | N.A. | N.A. | N.A. | N.A. | N.A. | 0 | 0 | 0 | H_only | train |
9ci8_B_A | 9ci8 | t cell receptor complex | no | immune system | 2024-07-02 | 2024-07-31 | electron microscopy | 3.01 | N.A. | N.A. | 39146975 | 10.1038/s41586-024-07920-0 | 0 | auth_asym_id | FabH:FabL | IGHV1 | IGKV1 | B | A | EVQLQQSGPELVKPGASMKISCKASGYSFTGYTMNWVKQSHGKNLEWMGLINPYKGVSTYNQKFKDKATLTVDKSSSTAYMELLSLTSEDSAVYYCARSGYYGDSDWYFDVWGQGTTLTVFSAKTTPPSVYPLAPGSXXXXXXMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLKSDLYTLSSSVTVXXXXXXXXXVTCNVAHPASSTTVDKKIVPR | MDIQMTQTTSSLSASLGDRVTISCRASQDIRNYLNWYQQKPDGTVKLLIYYTSRLHSGVPSKFSGSGSGTDYSLTISNLEQEDIATYFCQQGNTLPWTFAGGTKLEIXXRADAAPTVSIFPPASEQLTSGGASVVCFLNNFYPKSINSKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKNEYERHNSYTCEATHKXXXSPIVKSFNRS | EVQLQQSGPELVKPGASMKISCKASGYSFTGYTMNWVKQSHGKNLEWMGLINPYKGVSTYNQKFKDKATLTVDKSSSTAYMELLSLTSEDSAVYYCARSGYYGDSDWYFDVWGQGTTLTVFSAKTTPPSVYPLAPGSXXXXXXMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLKSDLYTLSSSVTVXXXXXXXXXVTCNVAHPASSTTVDKKIVPR | DIQMTQTTSSLSASLGDRVTISCRASQDIRNYLNWYQQKPDGTVKLLIYYTSRLHSGVPSKFSGSGSGTDYSLTISNLEQEDIATYFCQQGNTLPWTFAGGTKLEIXXRADAAPTVSIFPPASEQLTSGGASVVCFLNNFYPKSINSKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKNEYERHNSYTCEATHKXXXSPIVKSFNRS | 21.068579 | 22.735907 | 222 | 214 | 196 | 205 | 222 | 213 | 96 | ucht1 fab chain 2 | ucht1 fab | homo sapiens | homo sapiens | e | protein | t-cell surface glycoprotein cd3 epsilon chain | homo sapiens | 44 | 21 | 0.81 | HL | train |
9ci8_D_C | 9ci8 | t cell receptor complex | no | immune system | 2024-07-02 | 2024-07-31 | electron microscopy | 3.01 | N.A. | N.A. | 39146975 | 10.1038/s41586-024-07920-0 | 0 | auth_asym_id | FabH:FabL | IGHV1 | IGKV1 | D | C | EVQLQQSGPELVKPGASMKISCKASGYSFTGYTMNWVKQSHGKNLEWMGLINPYKGVSTYNQKFKDKATLTVDKSSSTAYMELLSLTSEDSAVYYCARSGYYGDSDWYFDVWGQGTTLTVFSAKTTPPSVYPLAPGSXXXXXXMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLKSDLYTLSSSVTVXXXXXXXXXVTCNVAHPASSTTVDKKIVPR | MDIQMTQTTSSLSASLGDRVTISCRASQDIRNYLNWYQQKPDGTVKLLIYYTSRLHSGVPSKFSGSGSGTDYSLTISNLEQEDIATYFCQQGNTLPWTFAGGTKLEIXXRADAAPTVSIFPPASEQLTSGGASVVCFLNNFYPKSINSKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKNEYERHNSYTCEATHKXXXSPIVKSFNRS | EVQLQQSGPELVKPGASMKISCKASGYSFTGYTMNWVKQSHGKNLEWMGLINPYKGVSTYNQKFKDKATLTVDKSSSTAYMELLSLTSEDSAVYYCARSGYYGDSDWYFDVWGQGTTLTVFSAKTTPPSVYPLAPGSXXXXXXMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLKSDLYTLSSSVTVXXXXXXXXXVTCNVAHPASSTTVDKKIVPR | MDIQMTQTTSSLSASLGDRVTISCRASQDIRNYLNWYQQKPDGTVKLLIYYTSRLHSGVPSKFSGSGSGTDYSLTISNLEQEDIATYFCQQGNTLPWTFAGGTKLEIXXRADAAPTVSIFPPASEQLTSGGASVVCFLNNFYPKSINSKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKNEYERHNSYTCEATHKXXXSPIVKSFNR | 21.655346 | 22.514347 | 222 | 214 | 207 | 197 | 222 | 213 | 101 | ucht1 fab chain 2 | ucht1 fab | homo sapiens | homo sapiens | f | protein | t-cell surface glycoprotein cd3 epsilon chain | homo sapiens | 48 | 23 | 0.85 | HL | train |
9ima_C_D | 9ima | cryo-em structure for the gprc5d complexed with talquetamab fab | no | membrane protein/immune system | 2024-07-02 | 2024-09-11 | electron microscopy | 2.65 | N.A. | N.A. | 39181182 | 10.1016/j.jmb.2024.168748 | 0 | auth_asym_id | FabH:FabL | IGHV1 | IGKV1 | C | D | QVQLVQSGAEVKKPGASVKVSCKASGYSFTGYTMNWVRQAPGQGLEWMGLINPYNSDTNYAQKLQGRVTMTTDTSTSTAYMELRSLRSDDTAVYYCARVALRVALDYWGQGTLVTVSSASTKGPSVFPLAPCSRSTSESTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTKTYTCNVDHKPSNTKVDKRVESKYGLVPRGSHHHHHH | DIQMTQSPSSLSASVGDRVTITCKASQNVATHVGWYQQKPGKAPKRLIYSASYRYSGVPSRFSGSGSGTEFTLTISNLQPEDFATYYCQQYNRYPYTFGQGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | QVQLVQSGAEVKKPGASVKVSCKASGYSFTGYTMNWVRQAPGQGLEWMGLINPYNSDTNYAQKLQGRVTMTTDTSTSTAYMELRSLRSDDTAVYYCARVALRVALDYWGQGTLVTVSSASTKGPSVFPLAPCSRSTSESTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTKTYTCNVDHKPSNTKVDKRVESKYG | DIQMTQSPSSLSASVGDRVTITCKASQNVATHVGWYQQKPGKAPKRLIYSASYRYSGVPSRFSGSGSGTEFTLTISNLQPEDFATYYCQQYNRYPYTFGQGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | 23.285433 | 23.203274 | 233 | 214 | 221 | 214 | 221 | 214 | 103 | talquetamab fab (anti-gprc5d) heavy chain | talquetamab fab (anti-gprc5d) light chain | mus musculus | mus musculus | A | protein | g-protein coupled receptor family c group 5 member d | homo sapiens | 45 | 19 | 0.86 | HL | train |
9fxt_H_M | 9fxt | l2a5 fab in complex with stn-ser | no | sugar binding protein | 2024-07-02 | 2025-02-12 | x-ray diffraction | 2.3 | 0.312 | 0.261 | 39886580 | 10.1021/jacsau.4c00921 | 0 | auth_asym_id | FabH:FabL | IGHV4 | IGKV3 | H | M | EVQLQESGPGLVKPSQSLSLTCSVIGYSITSGYYWNWIRQFPGNKLEWMGSINYDGSNIYNPSLKDRISITRDTSKNQFFLKLNSVTTEDTATYYCARGGDYWGQGTSVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSC | DIVLTQTPAIMSASPGEKVTLTCSASSSVSYMHWFQQKSGTSPKRWIYDTSKLASGVPARFSGSGSGTSYSLTISSMEAEDAAAYYCQQWSSDPPMLTFGAGTKLELKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | VQLQESGPGLVKPSQSLSLTCSVIGYSITSGYYWNWIRQFPGNKLEWMGSINYDGSNIYNPSLKDRISITRDTSKNQFFLKLNSVTTEDTATYYCARGGDYWGQGTSVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPK | LTQTPAIMSASPGEKVTLTCSASSSVSYMHWFQQKSGTSPKRWIYDTSKLASGVPARFSGSGSGTSYSLTISSMEAEDAAAYYCQQWSSDPPMLTFGAGTKLELKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE | 21.839867 | 22.350243 | 216 | 215 | 198 | 204 | 213 | 211 | 85 | l2a5 fab heavy chain | l2a5 fab light chain | homo sapiens | homo sapiens | N.A. | N.A. | N.A. | N.A. | 0 | 0 | 0 | HL | train |
9fxt_I_L | 9fxt | l2a5 fab in complex with stn-ser | no | sugar binding protein | 2024-07-02 | 2025-02-12 | x-ray diffraction | 2.3 | 0.312 | 0.261 | 39886580 | 10.1021/jacsau.4c00921 | 0 | auth_asym_id | FabH:FabL | IGHV4 | IGKV3 | I | L | EVQLQESGPGLVKPSQSLSLTCSVIGYSITSGYYWNWIRQFPGNKLEWMGSINYDGSNIYNPSLKDRISITRDTSKNQFFLKLNSVTTEDTATYYCARGGDYWGQGTSVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSC | DIVLTQTPAIMSASPGEKVTLTCSASSSVSYMHWFQQKSGTSPKRWIYDTSKLASGVPARFSGSGSGTSYSLTISSMEAEDAAAYYCQQWSSDPPMLTFGAGTKLELKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | EVQLQESGPGLVKPSQSLSLTCSVIGYSITSGYYWNWIRQFPGNKLEWMGSINYDGSNIYNPSLKDRISITRDTSKNQFFLKLNSVTTEDTATYYCARGGDYWGQGTSVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSC | DIVLTQTPAIMSASPGEKVTLTCSASSSVSYMHWFQQKSGTSPKRWIYDTSKLASGVPARFSGSGSGTSYSLTISSMEAEDAAAYYCQQWSSDPPMLTFGAGTKLELKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE | 22.655954 | 22.792044 | 216 | 215 | 216 | 214 | 216 | 214 | 95 | l2a5 fab heavy chain | l2a5 fab light chain | homo sapiens | homo sapiens | N.A. | N.A. | N.A. | N.A. | 0 | 0 | 0 | HL | train |
9fy8_B_C | 9fy8 | l2a5 fab in complex with stn-thr | no | sugar binding protein | 2024-07-03 | 2025-02-12 | x-ray diffraction | 2.62 | 0.306 | 0.248 | 39886580 | 10.1021/jacsau.4c00921 | 0 | auth_asym_id | FabH:FabL | IGHV4 | IGKV3 | B | C | EVQLQESGPGLVKPSQSLSLTCSVIGYSITSGYYWNWIRQFPGNKLEWMGSINYDGSNIYNPSLKDRISITRDTSKNQFFLKLNSVTTEDTATYYCARGGDYWGQGTSVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSC | DIVLTQTPAIMSASPGEKVTLTCSASSSVSYMHWFQQKSGTSPKRWIYDTSKLASGVPARFSGSGSGTSYSLTISSMEAEDAAAYYCQQWSSDPPMLTFGAGTKLELKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | EVQLQESGPGLVKPSQSLSLTCSVIGYSITSGYYWNWIRQFPGNKLEWMGSINYDGSNIYNPSLKDRISITRDTSKNQFFLKLNSVTTEDTATYYCARGGDYWGQGTSVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEP | DIVLTQTPAIMSASPGEKVTLTCSASSSVSYMHWFQQKSGTSPKRWIYDTSKLASGVPARFSGSGSGTSYSLTISSMEAEDAAAYYCQQWSSDPPMLTFGAGTKLELKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE | 22.542356 | 22.91294 | 216 | 215 | 211 | 212 | 213 | 214 | 82 | l2a5 fab heavy chain | l2a5 fab light chain | homo sapiens | homo sapiens | N.A. | N.A. | N.A. | N.A. | 0 | 0 | 0 | HL | train |
9fy8_I_L | 9fy8 | l2a5 fab in complex with stn-thr | no | sugar binding protein | 2024-07-03 | 2025-02-12 | x-ray diffraction | 2.62 | 0.306 | 0.248 | 39886580 | 10.1021/jacsau.4c00921 | 0 | auth_asym_id | FabH:FabL | IGHV4 | IGKV3 | I | L | EVQLQESGPGLVKPSQSLSLTCSVIGYSITSGYYWNWIRQFPGNKLEWMGSINYDGSNIYNPSLKDRISITRDTSKNQFFLKLNSVTTEDTATYYCARGGDYWGQGTSVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSC | DIVLTQTPAIMSASPGEKVTLTCSASSSVSYMHWFQQKSGTSPKRWIYDTSKLASGVPARFSGSGSGTSYSLTISSMEAEDAAAYYCQQWSSDPPMLTFGAGTKLELKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | EVQLQESGPGLVKPSQSLSLTCSVIGYSITSGYYWNWIRQFPGNKLEWMGSINYDGSNIYNPSLKDRISITRDTSKNQFFLKLNSVTTEDTATYYCARGGDYWGQGTSVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEP | DIVLTQTPAIMSASPGEKVTLTCSASSSVSYMHWFQQKSGTSPKRWIYDTSKLASGVPARFSGSGSGTSYSLTISSMEAEDAAAYYCQQWSSDPPMLTFGAGTKLELKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE | 22.228987 | 22.722136 | 216 | 215 | 209 | 214 | 213 | 214 | 80 | l2a5 fab heavy chain | l2a5 fab light chain | homo sapiens | homo sapiens | N.A. | N.A. | N.A. | N.A. | 0 | 0 | 0 | HL | train |
9fyq_D | 9fyq | cryo-em structure of native sv2a in complex with tent-hc, gangliosides and pro-macrobody 5 | no | membrane protein | 2024-07-03 | 2025-05-21 | electron microscopy | 3.25 | N.A. | N.A. | 40325068 | 10.1038/s41467-025-59545-0 | 0 | auth_asym_id | VH | IGHV3 | N.A. | D | N.A. | GPSQVQLVESGGGLVQAGGSLRLSCAASGRTFSRFIMGWFRQAPGKEREFVAAVGKSGDTTYYADSMSGRFAISRDNAKNTVYLQMISLKPEDTAVYYCAADSSYFYHTHESEYDYWGQGTQVTVPPLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLI... | N.A. | QVQLVESGGGLVQAGGSLRLSCAASGRTFSRFIMGWFRQAPGKEREFVAAVGKSGDTTYYADSMSGRFAISRDNAKNTVYLQMISLKPEDTAVYYCAADSSYFYHTHESEYDYWGQGTQVTV | N.A. | 13.671386 | 0 | 490 | 0 | 122 | 0 | 122 | 0 | 0 | pro-macrobody 5,maltose/maltodextrin-binding periplasmic protein | N.A. | lama glama | N.A. | A | protein | synaptic vesicle glycoprotein 2a | ovis aries | 39 | 10 | 0.59 | H_only | train |
9fyr_D | 9fyr | cryo-em structure of native sv2a in complex with tent-hc, pro-macrobody 5 and levetiracetam | no | membrane protein | 2024-07-03 | 2025-05-21 | electron microscopy | 3.6 | N.A. | N.A. | 40325068 | 10.1038/s41467-025-59545-0 | 0 | auth_asym_id | VH | IGHV3 | N.A. | D | N.A. | GPSQVQLVESGGGLVQAGGSLRLSCAASGRTFSRFIMGWFRQAPGKEREFVAAVGKSGDTTYYADSMSGRFAISRDNAKNTVYLQMISLKPEDTAVYYCAADSSYFYHTHESEYDYWGQGTQVTVPPLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLI... | N.A. | QVQLVESGGGLVQAGGSLRLSCAASGRTFSRFIMGWFRQAPGKEREFVAAVGKSGDTTYYADSMSGRFAISRDNAKNTVYLQMISLKPEDTAVYYCAADSSYFYHTHESEYDYWGQGTQVT | N.A. | 13.674609 | 0 | 490 | 0 | 121 | 0 | 121 | 0 | 0 | pro-macrobody 5,maltose/maltodextrin-binding periplasmic protein,maltose/maltodextrin-binding periplasmic protein | N.A. | lama glama | N.A. | A | protein | synaptic vesicle glycoprotein 2a | ovis aries | 35 | 9 | 0.56 | H_only | train |
9fys_B_C | 9fys | d11 mabs bound to alpha-bungarotoxin | no | toxin | 2024-07-03 | 2025-07-16 | x-ray diffraction | 1.32 | 0.192 | 0.167 | 40936197 | 10.1080/19420862.2025.2553624 | 0 | auth_asym_id | VH:VL | IGHV1 | IGLV6 | B | C | AQVQLVQSGAEVKKPGSSVKVSCKASGGTFSSYAISWVRQAPGQGLEWMGGIIPIFGTANYAQKFQGRVTITADESTSTAYMELRSLRSDDTAVYYCARDNLGYCSGGSCYSDYYYYYMDVWGQGTLVTVSSGGGGSGGGGSGG | GASNFMLTQPRSVSESPGKTVTISCTRSSGSIGSDYVHWYQQRPGSSPTTVIYEDNQRPSGVPDRFSGSIDSSSNSASLTISGLKTEDEADYYCQSYDRSNHEVVFGGGTKLTVLENLYFQ | QVQLVQSGAEVKKPGSSVKVSCKASGGTFSSYAISWVRQAPGQGLEWMGGIIPIFGTANYAQKFQGRVTITADESTSTAYMELRSLRSDDTAVYYCARDNLGYCSGGSCYSDYYYYYMDVWGQGTLVTVSSGG | ASNFMLTQPRSVSESPGKTVTISCTRSSGSIGSDYVHWYQQRPGSSPTTVIYEDNQRPSGVPDRFSGSIDSSSNSASLTISGLKTEDEADYYCQSYDRSNHEVVFGGGTKLTVLENLYF | 14.562628 | 14.657791 | 144 | 121 | 133 | 119 | 133 | 119 | 47 | d11 mabs light chain | heavy chain | homo sapiens | homo sapiens | X;Z | protein;protein | alpha-bungarotoxin;alpha-bungarotoxin | bungarus multicinctus;bungarus multicinctus | 47;11 | 22;7 | 0.92;1.0 | HL | train |
9fys_I_M | 9fys | d11 mabs bound to alpha-bungarotoxin | no | toxin | 2024-07-03 | 2025-07-16 | x-ray diffraction | 1.32 | 0.192 | 0.167 | 40936197 | 10.1080/19420862.2025.2553624 | 0 | auth_asym_id | VH:VL | IGHV1 | IGLV6 | I | M | AQVQLVQSGAEVKKPGSSVKVSCKASGGTFSSYAISWVRQAPGQGLEWMGGIIPIFGTANYAQKFQGRVTITADESTSTAYMELRSLRSDDTAVYYCARDNLGYCSGGSCYSDYYYYYMDVWGQGTLVTVSSGGGGSGGGGSGG | GASNFMLTQPRSVSESPGKTVTISCTRSSGSIGSDYVHWYQQRPGSSPTTVIYEDNQRPSGVPDRFSGSIDSSSNSASLTISGLKTEDEADYYCQSYDRSNHEVVFGGGTKLTVLENLYFQ | QVQLVQSGAEVKKPGSSVKVSCKASGGTFSSYAISWVRQAPGQGLEWMGGIIPIFGTANYAQKFQGRVTITADESTSTAYMELRSLRSDDTAVYYCARDNLGYCSGGSCYSDYYYYYMDVWGQGTLVTVSSGG | ASNFMLTQPRSVSESPGKTVTISCTRSSGSIGSDYVHWYQQRPGSSPTTVIYEDNQRPSGVPDRFSGSIDSSSNSASLTISGLKTEDEADYYCQSYDRSNHEVVFGGGTKLTVLENLYFQ | 14.52071 | 14.919388 | 144 | 121 | 133 | 120 | 133 | 120 | 47 | d11 mabs light chain | heavy chain | homo sapiens | homo sapiens | X;Z | protein;protein | alpha-bungarotoxin;alpha-bungarotoxin | bungarus multicinctus;bungarus multicinctus | 13;47 | 7;22 | 0.88;0.88 | HL | train |
9fyt_C_D | 9fyt | mabs in complex with cobratoxin at ph 4.5 | no | toxin | 2024-07-03 | 2025-07-16 | x-ray diffraction | 1.55 | 0.237 | 0.185 | 40936197 | 10.1080/19420862.2025.2553624 | 0 | auth_asym_id | VH:VL | IGHV1 | IGLV3 | C | D | AQVQLVQSGAEVKKPGSSVKVSCKASGGTFSSYAISWVRQAPGQGLEWMGGIIPIFGTANYAQKFQGRVTITADESTSTAYMELRSLRSDDTAVYYCARDNLGYCSGGSCYSDYYYYYMDVWGQGTLVTVSSGGGGSGGGGSGG | GASSYELTQPPSVSVAPGRTATITCEGDNIGQQIVHWYQQKPGQAPVAVISSDSDRPSGIPERFSGSNSGNTATLTISRVEAGDEADYYCQVWDSGSDHVVFGGGTKVTVLENLYFQ | QVQLVQSGAEVKKPGSSVKVSCKASGGTFSSYAISWVRQAPGQGLEWMGGIIPIFGTANYAQKFQGRVTITADESTSTAYMELRSLRSDDTAVYYCARDNLGYCSGGSCYSDYYYYYMDVWGQGTLVTVSS | SSYELTQPPSVSVAPGRTATITCEGDNIGQQIVHWYQQKPGQAPVAVISSDSDRPSGIPERFSGSNSGNTATLTISRVEAGDEADYYCQVWDSGSDHVVFGGGTKVTVLENLYF | 14.502356 | 14.245676 | 144 | 117 | 131 | 114 | 131 | 114 | 44 | light chain scfv a01 | heavy chain scfv ao1 | homo sapiens | homo sapiens | A;B | protein;protein | alpha-cobratoxin;alpha-cobratoxin | naja kaouthia;naja kaouthia | 40;24 | 20;9 | 1.0;0.64 | HL | train |
9fyt_I_M | 9fyt | mabs in complex with cobratoxin at ph 4.5 | no | toxin | 2024-07-03 | 2025-07-16 | x-ray diffraction | 1.55 | 0.237 | 0.185 | 40936197 | 10.1080/19420862.2025.2553624 | 0 | auth_asym_id | VH:VL | IGHV1 | IGLV3 | I | M | AQVQLVQSGAEVKKPGSSVKVSCKASGGTFSSYAISWVRQAPGQGLEWMGGIIPIFGTANYAQKFQGRVTITADESTSTAYMELRSLRSDDTAVYYCARDNLGYCSGGSCYSDYYYYYMDVWGQGTLVTVSSGGGGSGGGGSGG | GASSYELTQPPSVSVAPGRTATITCEGDNIGQQIVHWYQQKPGQAPVAVISSDSDRPSGIPERFSGSNSGNTATLTISRVEAGDEADYYCQVWDSGSDHVVFGGGTKVTVLENLYFQ | QVQLVQSGAEVKKPGSSVKVSCKASGGTFSSYAISWVRQAPGQGLEWMGGIIPIFGTANYAQKFQGRVTITADESTSTAYMELRSLRSDDTAVYYCARDNLGYCSGGSCYSDYYYYYMDVWGQGTLVTVSS | SSYELTQPPSVSVAPGRTATITCEGDNIGQQIVHWYQQKPGQAPVAVISSDSDRPSGIPERFSGSNSGNTATLTISRVEAGDEADYYCQVWDSGSDHVVFGGGTKVTVLENLYF | 14.486186 | 14.282624 | 144 | 117 | 131 | 114 | 131 | 114 | 44 | light chain scfv a01 | heavy chain scfv ao1 | homo sapiens | homo sapiens | A;B | protein;protein | alpha-cobratoxin;alpha-cobratoxin | naja kaouthia;naja kaouthia | 24;41 | 9;21 | 0.64;1.0 | HL | train |
9cin_H_L | 9cin | fab fragment of antibody with niv glycoprotein f | no | viral protein/immune system | 2024-07-03 | 2026-01-28 | electron microscopy | 3.03 | N.A. | N.A. | N.A. | N.A. | 0 | auth_asym_id | VH:VL | IGHV3 | IGKV3 | H | L | QVQLVESGGGVVQPGRSLRLSCAASGFTFSSYGIHWVRQAPGKGLEWVALIDYAGSNKYYSDSVKGRFTISRDNSKNTLYLQMKSLRAEDTAVYYCARDRDYGILTGYPDYWGQGALVTVSS | IVLTQSPATLSLSPGERATLSCRASQSVSSYLAWYQQKPGQAPRLLIYDASNRATGIPARFSGSGSGTDFTLTISSLEPEDFAVYYCQHRSNWPPLTFGGGTKVEIK | QVQLVESGGGVVQPGRSLRLSCAASGFTFSSYGIHWVRQAPGKGLEWVALIDYAGSNKYYSDSVKGRFTISRDNSKNTLYLQMKSLRAEDTAVYYCARDRDYGILTGYPDYWGQGALVTVSS | IVLTQSPATLSLSPGERATLSCRASQSVSSYLAWYQQKPGQAPRLLIYDASNRATGIPARFSGSGSGTDFTLTISSLEPEDFAVYYCQHRSNWPPLTFGGGTKVEIK | 14.033355 | 13.414362 | 122 | 107 | 122 | 107 | 122 | 107 | 44 | antibody heavy chain | antibody light chain | mus musculus | mus musculus | A | protein | fusion glycoprotein f0 | henipavirus nipahense | 51 | 24 | 0.89 | HL | train |
9cin_J_K | 9cin | fab fragment of antibody with niv glycoprotein f | no | viral protein/immune system | 2024-07-03 | 2026-01-28 | electron microscopy | 3.03 | N.A. | N.A. | N.A. | N.A. | 0 | auth_asym_id | VH:VL | IGHV3 | IGKV3 | J | K | QVQLVESGGGVVQPGRSLRLSCAASGFTFSSYGIHWVRQAPGKGLEWVALIDYAGSNKYYSDSVKGRFTISRDNSKNTLYLQMKSLRAEDTAVYYCARDRDYGILTGYPDYWGQGALVTVSS | IVLTQSPATLSLSPGERATLSCRASQSVSSYLAWYQQKPGQAPRLLIYDASNRATGIPARFSGSGSGTDFTLTISSLEPEDFAVYYCQHRSNWPPLTFGGGTKVEIK | QVQLVESGGGVVQPGRSLRLSCAASGFTFSSYGIHWVRQAPGKGLEWVALIDYAGSNKYYSDSVKGRFTISRDNSKNTLYLQMKSLRAEDTAVYYCARDRDYGILTGYPDYWGQGALVTVSS | IVLTQSPATLSLSPGERATLSCRASQSVSSYLAWYQQKPGQAPRLLIYDASNRATGIPARFSGSGSGTDFTLTISSLEPEDFAVYYCQHRSNWPPLTFGGGTKVEIK | 14.029955 | 13.421538 | 122 | 107 | 122 | 107 | 122 | 107 | 44 | antibody heavy chain | antibody light chain | mus musculus | mus musculus | B | protein | fusion glycoprotein f0 | henipavirus nipahense | 49 | 23 | 0.92 | HL | train |
9cin_M_N | 9cin | fab fragment of antibody with niv glycoprotein f | no | viral protein/immune system | 2024-07-03 | 2026-01-28 | electron microscopy | 3.03 | N.A. | N.A. | N.A. | N.A. | 0 | auth_asym_id | VH:VL | IGHV3 | IGKV3 | M | N | QVQLVESGGGVVQPGRSLRLSCAASGFTFSSYGIHWVRQAPGKGLEWVALIDYAGSNKYYSDSVKGRFTISRDNSKNTLYLQMKSLRAEDTAVYYCARDRDYGILTGYPDYWGQGALVTVSS | IVLTQSPATLSLSPGERATLSCRASQSVSSYLAWYQQKPGQAPRLLIYDASNRATGIPARFSGSGSGTDFTLTISSLEPEDFAVYYCQHRSNWPPLTFGGGTKVEIK | QVQLVESGGGVVQPGRSLRLSCAASGFTFSSYGIHWVRQAPGKGLEWVALIDYAGSNKYYSDSVKGRFTISRDNSKNTLYLQMKSLRAEDTAVYYCARDRDYGILTGYPDYWGQGALVTVSS | IVLTQSPATLSLSPGERATLSCRASQSVSSYLAWYQQKPGQAPRLLIYDASNRATGIPARFSGSGSGTDFTLTISSLEPEDFAVYYCQHRSNWPPLTFGGGTKVEIK | 14.027267 | 13.407593 | 122 | 107 | 122 | 107 | 122 | 107 | 44 | antibody heavy chain | antibody light chain | mus musculus | mus musculus | C | protein | fusion glycoprotein f0 | henipavirus nipahense | 50 | 24 | 0.92 | HL | train |
9imx_C | 9imx | immune complex of hev e2s and p1-5b nanobody | no | viral protein/immune system | 2024-07-04 | 2025-09-03 | x-ray diffraction | 2.2 | 0.245 | 0.217 | N.A. | N.A. | 0 | auth_asym_id | VHH | IGHV3 | N.A. | C | N.A. | DVQLQESGGGLVQPGGSLRLSCAASTFTLDYYAIGWFRQAPGKEREGVSCISSRGGSTDYADSVKGRFTISRDNAKNTVYLQMSSLQPEDTAVYYCAAAGWAGYGCPPNRYEYDYWGQGTQVTVSSHHHHHH | N.A. | DVQLQESGGGLVQPGGSLRLSCAASTFTLDYYAIGWFRQAPGKEREGVSCISSRGGSTDYADSVKGRFTISRDNAKNTVYLQMSSLQPEDTAVYYCAAAGWAGYGCPPNRYEYDYWGQGTQV | N.A. | 12.58174 | 0 | 132 | 0 | 96 | 0 | 122 | 0 | 0 | p1-5b nanobody | N.A. | vicugna pacos | N.A. | N.A. | N.A. | N.A. | N.A. | 0 | 0 | 0 | H_only | train |
9imx_D | 9imx | immune complex of hev e2s and p1-5b nanobody | no | viral protein/immune system | 2024-07-04 | 2025-09-03 | x-ray diffraction | 2.2 | 0.245 | 0.217 | N.A. | N.A. | 0 | auth_asym_id | VHH | IGHV3 | N.A. | D | N.A. | DVQLQESGGGLVQPGGSLRLSCAASTFTLDYYAIGWFRQAPGKEREGVSCISSRGGSTDYADSVKGRFTISRDNAKNTVYLQMSSLQPEDTAVYYCAAAGWAGYGCPPNRYEYDYWGQGTQVTVSSHHHHHH | N.A. | VQLQESGGGLVQPGGSLRLSCAASTFTLDYYAIGWFRQAPGKEREGVSCISSRGGSTDYADSVKGRFTISRDNAKNTVYLQMSSLQPEDTAVYYCAAAGWAGYGCPPNRYEYDYWGQGTQV | N.A. | 12.44033 | 0 | 132 | 0 | 95 | 0 | 121 | 0 | 0 | p1-5b nanobody | N.A. | vicugna pacos | N.A. | N.A. | N.A. | N.A. | N.A. | 0 | 0 | 0 | H_only | train |
9imx_G | 9imx | immune complex of hev e2s and p1-5b nanobody | no | viral protein/immune system | 2024-07-04 | 2025-09-03 | x-ray diffraction | 2.2 | 0.245 | 0.217 | N.A. | N.A. | 0 | auth_asym_id | VHH | IGHV3 | N.A. | G | N.A. | DVQLQESGGGLVQPGGSLRLSCAASTFTLDYYAIGWFRQAPGKEREGVSCISSRGGSTDYADSVKGRFTISRDNAKNTVYLQMSSLQPEDTAVYYCAAAGWAGYGCPPNRYEYDYWGQGTQVTVSSHHHHHH | N.A. | DVQLQESGGGLVQPGGSLRLSCAASTFTLDYYAIGWFRQAPGKEREGVSCISSRGGSTDYADSVKGRFTISRDNAKNTVYLQMSSLQPEDTAVYYCAAAGWAGYGCPPNRYEYDYWGQGTQV | N.A. | 12.534592 | 0 | 132 | 0 | 96 | 0 | 122 | 0 | 0 | p1-5b nanobody | N.A. | vicugna pacos | N.A. | N.A. | N.A. | N.A. | N.A. | 0 | 0 | 0 | H_only | train |
9imx_H | 9imx | immune complex of hev e2s and p1-5b nanobody | no | viral protein/immune system | 2024-07-04 | 2025-09-03 | x-ray diffraction | 2.2 | 0.245 | 0.217 | N.A. | N.A. | 0 | auth_asym_id | VHH | IGHV3 | N.A. | H | N.A. | DVQLQESGGGLVQPGGSLRLSCAASTFTLDYYAIGWFRQAPGKEREGVSCISSRGGSTDYADSVKGRFTISRDNAKNTVYLQMSSLQPEDTAVYYCAAAGWAGYGCPPNRYEYDYWGQGTQVTVSSHHHHHH | N.A. | VQLQESGGGLVQPGGSLRLSCAASTFTLDYYAIGWFRQAPGKEREGVSCISSRGGSTDYADSVKGRFTISRDNAKNTVYLQMSSLQPEDTAVYYCAAAGWAGYGCPPNRYEYDYWGQGTQV | N.A. | 12.368894 | 0 | 132 | 0 | 95 | 0 | 121 | 0 | 0 | p1-5b nanobody | N.A. | vicugna pacos | N.A. | N.A. | N.A. | N.A. | N.A. | 0 | 0 | 0 | H_only | train |
9fzc_C | 9fzc | structure of ompa-short in complex with nanobody nb01 | no | membrane protein | 2024-07-05 | 2024-07-17 | x-ray diffraction | 2.27 | 0.234 | 0.208 | 40659774 | 10.1038/s42003-025-08345-9 | 0 | auth_asym_id | VHH | IGHV3 | N.A. | C | N.A. | GPSQVQLVESGGGLVQPGGSLRLSCVVSGTGFTFSKSPMSWARQAPGKEREWVSAIFADSSTYYSDSVRGRFTISRDNAKNTVYLQMNNVKPEDTAVYYCGHRRLGKTTYDYRGKGTRVTVSA | N.A. | VQLVESGGGLVQPGGSLRLSCVVSGTGFTFSKSPMSWARQAPGKEREWVSAIFADSSTYYSDSVRGRFTISRDNAKNTVYLQMNNVKPEDTAVYYCGHRRLGKTTYDYRGKGTRVTV | N.A. | 13.457107 | 0 | 123 | 0 | 117 | 0 | 117 | 0 | 0 | nanobody 01 | N.A. | vicugna pacos | N.A. | A | protein | outer membrane protein a | escherichia coli k-12 | 30 | 12 | 0.86 | H_only | train |
9fzc_D | 9fzc | structure of ompa-short in complex with nanobody nb01 | no | membrane protein | 2024-07-05 | 2024-07-17 | x-ray diffraction | 2.27 | 0.234 | 0.208 | 40659774 | 10.1038/s42003-025-08345-9 | 0 | auth_asym_id | VHH | IGHV3 | N.A. | D | N.A. | GPSQVQLVESGGGLVQPGGSLRLSCVVSGTGFTFSKSPMSWARQAPGKEREWVSAIFADSSTYYSDSVRGRFTISRDNAKNTVYLQMNNVKPEDTAVYYCGHRRLGKTTYDYRGKGTRVTVSA | N.A. | VQLVESGGGLVQPGGSLRLSCVVSGTGFTFSKSPMSWARQAPGKEREWVSAIFADSSTYYSDSVRGRFTISRDNAKNTVYLQMNNVKPEDTAVYYCGHRRLGKTTYDYRGKGTRVTV | N.A. | 13.456408 | 0 | 123 | 0 | 117 | 0 | 117 | 0 | 0 | nanobody 01 | N.A. | vicugna pacos | N.A. | B | protein | outer membrane protein a | escherichia coli k-12 | 28 | 12 | 0.92 | H_only | train |
9fzd_B | 9fzd | structure of ompa-long in complex with nanobody nb39 | no | membrane protein | 2024-07-05 | 2024-07-17 | x-ray diffraction | 2.3 | 0.283 | 0.256 | 40659774 | 10.1038/s42003-025-08345-9 | 0 | auth_asym_id | VHH | IGHV3 | N.A. | B | N.A. | GPSQRQLVESGGGLVHTGGSLKLSCVPNGSIFNFNPMGWYRQVSGQQRELVATLTRDGVENYASSVKGRFTISRDSAKNTLYLQMTDVKPGDAAVYICHANYRIGRNDLPVWGKGTPVTVSA | N.A. | RQLVESGGGLVHTGGSLKLSCVPNGSIFNFNPMGWYRQVSGQQRELVATLTRDGVENYASSVKGRFTISRDSAKNTLYLQMTDVKPGDAAVYICHANYRIGRNDLPVWGKGTPVTVSA | N.A. | 13.990483 | 0 | 122 | 0 | 118 | 0 | 118 | 0 | 0 | nanobody 39 | N.A. | vicugna pacos | N.A. | A | protein | outer membrane protein a | escherichia coli | 38 | 12 | 0.8 | H_only | train |
9fzq_B | 9fzq | proton conductance by human uncoupling protein 1 is inhibited by both purine and pyrimidine nucleotides | no | transport protein | 2024-07-05 | 2025-03-05 | electron microscopy | 3.03 | N.A. | N.A. | 40021843 | 10.1038/s44318-025-00395-3 | 0 | auth_asym_id | VH | IGHV3 | N.A. | B | N.A. | QVQLVESGGGLVQAGDSLRLSCAASGLTLKNYAMGWFRQAPGKEHEFVAVISWSGSGTSYADSVEGRFTISRDNAKNTAFLQMSSLKPEDTAVYYCAARDGGYGSRWPDEYTYWGQGTQVTVPP | N.A. | QVQLVESGGGLVQAGDSLRLSCAASGLTLKNYAMGWFRQAPGKEHEFVAVISWSGSGTSYADSVEGRFTISRDNAKNTAFLQMSSLKPEDTAVYYCAARDGGYGSRWPDEYTYWGQGTQVTVPP | N.A. | 13.529868 | 0 | 124 | 0 | 124 | 0 | 124 | 0 | 0 | ca9871 | N.A. | lama glama | N.A. | A | protein | mitochondrial brown fat uncoupling protein 1 | homo sapiens | 32 | 10 | 0.62 | H_only | train |
9fzq_C | 9fzq | proton conductance by human uncoupling protein 1 is inhibited by both purine and pyrimidine nucleotides | no | transport protein | 2024-07-05 | 2025-03-05 | electron microscopy | 3.03 | N.A. | N.A. | 40021843 | 10.1038/s44318-025-00395-3 | 0 | auth_asym_id | VH | IGHV3 | N.A. | C | N.A. | QVQLVESGGGLVQAGGSLRLSCAPSGRTSSTYTMGWFRQAPGKEREFVAAISWTGTPYYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCAAARPGLFIFVSDYARTAKYDYWGQGTQVTVPP | N.A. | VQLVESGGGLVQAGGSLRLSCAPSGRTSSTYTMGWFRQAPGKEREFVAAISWTGTPYYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCAAARPGLFIFVSDYARTAKYDYWGQGTQVTVPP | N.A. | 13.82672 | 0 | 128 | 0 | 127 | 0 | 127 | 0 | 0 | ca9865 | N.A. | lama glama | N.A. | A | protein | mitochondrial brown fat uncoupling protein 1 | homo sapiens | 24 | 13 | 0.93 | H_only | train |
9ind_H_L | 9ind | integrin alpha-v beta-8 in complex with the fab of 130h2 | no | signaling protein/immune system | 2024-07-06 | 2025-01-22 | electron microscopy | 2.88 | N.A. | N.A. | 39743547 | 10.1186/s13046-024-03250-1 | 0 | auth_asym_id | VH:VL | IGHV1 | IGKV3 | H | L | EVQLVQSGAEVKKPGASVKVSCKASGYTFTNYGINWVRQAPGQGLEWMGYFYIGNGYTEYNEKFKGRVTMTSDTSTSTVYMELSSLRSEDTAVYYCALNYFGSRKFDYWGQGTTVTVSS | EIVLTQSPATLSLSPGERATLSCRASQNIITNLHWYQQKPGQAPRLLIKYASQSISGIPARFSGSGSGTDFTLTISSLEPEDFAVYFCQQSDDWPLTFGQGTKL | EVQLVQSGAEVKKPGASVKVSCKASGYTFTNYGINWVRQAPGQGLEWMGYFYIGNGYTEYNEKFKGRVTMTSDTSTSTVYMELSSLRSEDTAVYYCALNYFGSRKFDYWGQGTTVTVSS | EIVLTQSPATLSLSPGERATLSCRASQNIITNLHWYQQKPGQAPRLLIKYASQSISGIPARFSGSGSGTDFTLTISSLEPEDFAVYFCQQSDDWPLTFGQGTKL | 13.886736 | 13.0311 | 119 | 104 | 119 | 104 | 119 | 104 | 42 | the heavy chain of 130h2-fab | the light chain of 130h2-fab | mus musculus | mus musculus | B | protein | integrin beta-8 | homo sapiens | 51 | 19 | 0.76 | HL | train |
9cjz_H_L | 9cjz | cryoem structure of nc99 hemagglutinin trimer in complex with fab t009 3-e04 | no | viral protein | 2024-07-08 | 2025-07-09 | electron microscopy | 3.8 | N.A. | N.A. | 40568173 | 10.1101/2025.02.21.639368 | 0 | auth_asym_id | VH:VL | IGHV3 | IGKV3 | H | L | EVQLVESGGGLVQPGGSLRLSCAASGFTFSSYGLSWVRQAPGKGLEWVSYISNSGISTYYADSVKGRFTISRDNSKNTVSLQLNSLTPEDTAVYYCAKKGSTLIPYTWFDVWGPGVLVTVSS | EIVMTQSPATLSLSPGERATLSCRASQSVSTSLAWYQQKPGQAPKLLIYGASSRATGIPDRFSGSGSGTEFTLTISSLEPEDVGVYYCQQDYNWPPLTFGGGTKVEIK | VQLVESGGGLVQPGGSLRLSCAASGFTFSSYGLSWVRQAPGKGLEWVSYISNSGISTYYADSVKGRFTISRDNSKNTVSLQLNSLTPEDTAVYYCAKKGSTLIPYTWFDVWGPGVLV | IVMTQSPATLSLSPGERATLSCRASQSVSTSLAWYQQKPGQAPKLLIYGASSRATGIPDRFSGSGSGTEFTLTISSLEPEDVGVYYCQQDYNWPPLTFGGGTKV | 13.345927 | 12.76275 | 122 | 108 | 109 | 90 | 117 | 104 | 38 | 3-e04 heavy chain | 3-e04 light chain | macaca fascicularis | macaca fascicularis | B | protein | hemagglutinin ha2 chain | influenza a virus | 33 | 13 | 0.76 | HL | train |
9cjz_J_K | 9cjz | cryoem structure of nc99 hemagglutinin trimer in complex with fab t009 3-e04 | no | viral protein | 2024-07-08 | 2025-07-09 | electron microscopy | 3.8 | N.A. | N.A. | 40568173 | 10.1101/2025.02.21.639368 | 0 | auth_asym_id | VH:VL | IGHV3 | IGKV3 | J | K | EVQLVESGGGLVQPGGSLRLSCAASGFTFSSYGLSWVRQAPGKGLEWVSYISNSGISTYYADSVKGRFTISRDNSKNTVSLQLNSLTPEDTAVYYCAKKGSTLIPYTWFDVWGPGVLVTVSS | EIVMTQSPATLSLSPGERATLSCRASQSVSTSLAWYQQKPGQAPKLLIYGASSRATGIPDRFSGSGSGTEFTLTISSLEPEDVGVYYCQQDYNWPPLTFGGGTKVEIK | VQLVESGGGLVQPGGSLRLSCAASGFTFSSYGLSWVRQAPGKGLEWVSYISNSGISTYYADSVKGRFTISRDNSKNTVSLQLNSLTPEDTAVYYCAKKGSTLIPYTWFDVWGPGVLV | IVMTQSPATLSLSPGERATLSCRASQSVSTSLAWYQQKPGQAPKLLIYGASSRATGIPDRFSGSGSGTEFTLTISSLEPEDVGVYYCQQDYNWPPLTFGGGTKV | 13.376751 | 12.307488 | 122 | 108 | 109 | 86 | 117 | 104 | 42 | 3-e04 heavy chain | 3-e04 light chain | macaca fascicularis | macaca fascicularis | D | protein | hemagglutinin ha2 chain | influenza a virus | 38 | 16 | 0.84 | HL | train |
9cjz_M_N | 9cjz | cryoem structure of nc99 hemagglutinin trimer in complex with fab t009 3-e04 | no | viral protein | 2024-07-08 | 2025-07-09 | electron microscopy | 3.8 | N.A. | N.A. | 40568173 | 10.1101/2025.02.21.639368 | 0 | auth_asym_id | VH:VL | IGHV3 | IGKV3 | M | N | EVQLVESGGGLVQPGGSLRLSCAASGFTFSSYGLSWVRQAPGKGLEWVSYISNSGISTYYADSVKGRFTISRDNSKNTVSLQLNSLTPEDTAVYYCAKKGSTLIPYTWFDVWGPGVLVTVSS | EIVMTQSPATLSLSPGERATLSCRASQSVSTSLAWYQQKPGQAPKLLIYGASSRATGIPDRFSGSGSGTEFTLTISSLEPEDVGVYYCQQDYNWPPLTFGGGTKVEIK | VQLVESGGGLVQPGGSLRLSCAASGFTFSSYGLSWVRQAPGKGLEWVSYISNSGISTYYADSVKGRFTISRDNSKNTVSLQLNSLTPEDTAVYYCAKKGSTLIPYTWFDVWGPGVLV | IVMTQSPATLSLSPGERATLSCRASQSVSTSLAWYQQKPGQAPKLLIYGASSRATGIPDRFSGSGSGTEFTLTISSLEPEDVGVYYCQQDYNWPPLTFGGGTKV | 13.34291 | 12.77823 | 122 | 108 | 109 | 91 | 117 | 104 | 43 | 3-e04 heavy chain | 3-e04 light chain | macaca fascicularis | macaca fascicularis | F | protein | hemagglutinin ha2 chain | influenza a virus | 32 | 13 | 0.87 | HL | train |
9ck4_A_B | 9ck4 | l9 epitope scaffold complexed with l9 fabs | no | immune system | 2024-07-08 | 2026-01-21 | electron microscopy | 3.1 | N.A. | N.A. | N.A. | N.A. | 0 | auth_asym_id | VH:VL | IGHV3 | IGKV1 | A | B | QVKLVESGGGVVQPGRSLRLSCEASGFIFSTYGMHWVRQAPGKGLEWVAVIWFDGSNIYYADSVKGRFTISRDNSKNTVFMQMDSLRAEDTAVYYCHRNFYDGSGPFDYWGQGTLVTVS | DIQMTQSPSTLSASVGDRVTITCRASQFISRWLAWYQQKPGKAPKLLIYKASSLESGVPSRFSGSGSETHFTLTISSLQPDDVATYYCQEYTSYGRTFGQGTKVEIK | QVKLVESGGGVVQPGRSLRLSCEASGFIFSTYGMHWVRQAPGKGLEWVAVIWFDGSNIYYADSVKGRFTISRDNSKNTVFMQMDSLRAEDTAVYYCHRNFYDGSGPFDYWGQGTLVTVS | DIQMTQSPSTLSASVGDRVTITCRASQFISRWLAWYQQKPGKAPKLLIYKASSLESGVPSRFSGSGSETHFTLTISSLQPDDVATYYCQEYTSYGRTFGQGTKVEIK | 14.091551 | 13.234797 | 119 | 107 | 119 | 107 | 119 | 107 | 41 | l9 heavy chain | l9 light chain | homo sapiens | homo sapiens | W | protein | l9 epitope scaffold | plasmodium falciparum 3d7 | 23 | 13 | 0.93 | HL | train |
9ck4_C_D | 9ck4 | l9 epitope scaffold complexed with l9 fabs | no | immune system | 2024-07-08 | 2026-01-21 | electron microscopy | 3.1 | N.A. | N.A. | N.A. | N.A. | 0 | auth_asym_id | VH:VL | IGHV3 | IGKV1 | C | D | QVKLVESGGGVVQPGRSLRLSCEASGFIFSTYGMHWVRQAPGKGLEWVAVIWFDGSNIYYADSVKGRFTISRDNSKNTVFMQMDSLRAEDTAVYYCHRNFYDGSGPFDYWGQGTLVTVS | DIQMTQSPSTLSASVGDRVTITCRASQFISRWLAWYQQKPGKAPKLLIYKASSLESGVPSRFSGSGSETHFTLTISSLQPDDVATYYCQEYTSYGRTFGQGTKVEIK | QVKLVESGGGVVQPGRSLRLSCEASGFIFSTYGMHWVRQAPGKGLEWVAVIWFDGSNIYYADSVKGRFTISRDNSKNTVFMQMDSLRAEDTAVYYCHRNFYDGSGPFDYWGQGTLVTVS | DIQMTQSPSTLSASVGDRVTITCRASQFISRWLAWYQQKPGKAPKLLIYKASSLESGVPSRFSGSGSETHFTLTISSLQPDDVATYYCQEYTSYGRTFGQGTKVEIK | 14.019396 | 13.304341 | 119 | 107 | 119 | 107 | 119 | 107 | 48 | l9 heavy chain | l9 light chain | homo sapiens | homo sapiens | W | protein | l9 epitope scaffold | plasmodium falciparum 3d7 | 35 | 18 | 0.86 | HL | train |
9ck4_E_F | 9ck4 | l9 epitope scaffold complexed with l9 fabs | no | immune system | 2024-07-08 | 2026-01-21 | electron microscopy | 3.1 | N.A. | N.A. | N.A. | N.A. | 0 | auth_asym_id | VH:VL | IGHV3 | IGKV1 | E | F | QVKLVESGGGVVQPGRSLRLSCEASGFIFSTYGMHWVRQAPGKGLEWVAVIWFDGSNIYYADSVKGRFTISRDNSKNTVFMQMDSLRAEDTAVYYCHRNFYDGSGPFDYWGQGTLVTVS | DIQMTQSPSTLSASVGDRVTITCRASQFISRWLAWYQQKPGKAPKLLIYKASSLESGVPSRFSGSGSETHFTLTISSLQPDDVATYYCQEYTSYGRTFGQGTKVEIK | QVKLVESGGGVVQPGRSLRLSCEASGFIFSTYGMHWVRQAPGKGLEWVAVIWFDGSNIYYADSVKGRFTISRDNSKNTVFMQMDSLRAEDTAVYYCHRNFYDGSGPFDYWGQGTLVTVS | DIQMTQSPSTLSASVGDRVTITCRASQFISRWLAWYQQKPGKAPKLLIYKASSLESGVPSRFSGSGSETHFTLTISSLQPDDVATYYCQEYTSYGRTFGQGTKVEIK | 14.031018 | 13.243 | 119 | 107 | 119 | 107 | 119 | 107 | 43 | l9 heavy chain | l9 light chain | homo sapiens | homo sapiens | W | protein | l9 epitope scaffold | plasmodium falciparum 3d7 | 29 | 14 | 0.82 | HL | train |
9g13_A | 9g13 | vhh h3-2 in complex with tau c-terminal peptide | no | immune system | 2024-07-09 | 2024-07-31 | x-ray diffraction | 1.8 | 0.231 | 0.172 | 40175345 | 10.1038/s41467-025-58383-4 | 0 | auth_asym_id | VHH | IGHV3 | N.A. | A | N.A. | GAMAEVQLQASGGGFVQPGGSLRLSCAASGYTSGDEIMGWFRQAPGKEREFVSAISWQSGTSTYYADSVKGRFTISRDNSKNTVYLQMNSLRAEDTATYYCAPMTLAETYYEWLISGYWGQGTQVTVSSAAA | N.A. | QLQASGGGFVQPGGSLRLSCAASGYTSGDEIMGWFRQAPGKEREFVSAISWQSGTSTYYADSVKGRFTISRDNSKNTVYLQMNSLRAEDTATYYCAPMTLAETYYEWLISGYWGQGTQVTVSSAAA | N.A. | 20.31328 | 0 | 132 | 0 | 126 | 0 | 126 | 0 | 0 | vhh h3-2 | N.A. | lama glama | N.A. | B | peptide | isoform tau-f of microtubule-associated protein tau | homo sapiens | 27 | 13 | 0.87 | H_only | train |
9g13_C | 9g13 | vhh h3-2 in complex with tau c-terminal peptide | no | immune system | 2024-07-09 | 2024-07-31 | x-ray diffraction | 1.8 | 0.231 | 0.172 | 40175345 | 10.1038/s41467-025-58383-4 | 0 | auth_asym_id | VHH | IGHV3 | N.A. | C | N.A. | GAMAEVQLQASGGGFVQPGGSLRLSCAASGYTSGDEIMGWFRQAPGKEREFVSAISWQSGTSTYYADSVKGRFTISRDNSKNTVYLQMNSLRAEDTATYYCAPMTLAETYYEWLISGYWGQGTQVTVSSAAA | N.A. | QLQASGGGFVQPGGSLRLSCAASGYTSGDEIMGWFRQAPGKEREFVSAISWQSGTSTYYADSVKGRFTISRDNSKNTVYLQMNSLRAEDTATYYCAPMTLAETYYEWLISGYWGQGTQVTVSSAA | N.A. | 20.126013 | 0 | 132 | 0 | 125 | 0 | 125 | 0 | 0 | vhh h3-2 | N.A. | lama glama | N.A. | D | peptide | isoform tau-f of microtubule-associated protein tau | homo sapiens | 26 | 13 | 0.87 | H_only | train |
9g13_E | 9g13 | vhh h3-2 in complex with tau c-terminal peptide | no | immune system | 2024-07-09 | 2024-07-31 | x-ray diffraction | 1.8 | 0.231 | 0.172 | 40175345 | 10.1038/s41467-025-58383-4 | 0 | auth_asym_id | VHH | IGHV3 | N.A. | E | N.A. | GAMAEVQLQASGGGFVQPGGSLRLSCAASGYTSGDEIMGWFRQAPGKEREFVSAISWQSGTSTYYADSVKGRFTISRDNSKNTVYLQMNSLRAEDTATYYCAPMTLAETYYEWLISGYWGQGTQVTVSSAAA | N.A. | VQLQASGGGFVQPGGSLRLSCAASGYTSGDEIMGWFRQAPGKEREFVSAISWQSGTSTYYADSVKGRFTISRDNSKNTVYLQMNSLRAEDTATYYCAPMTLAETYYEWLISGYWGQGTQVTVSSAAA | N.A. | 20.155397 | 0 | 132 | 0 | 127 | 0 | 127 | 0 | 0 | vhh h3-2 | N.A. | lama glama | N.A. | F | peptide | isoform tau-f of microtubule-associated protein tau | homo sapiens | 26 | 14 | 1 | H_only | train |
9g13_G | 9g13 | vhh h3-2 in complex with tau c-terminal peptide | no | immune system | 2024-07-09 | 2024-07-31 | x-ray diffraction | 1.8 | 0.231 | 0.172 | 40175345 | 10.1038/s41467-025-58383-4 | 0 | auth_asym_id | VHH | IGHV3 | N.A. | G | N.A. | GAMAEVQLQASGGGFVQPGGSLRLSCAASGYTSGDEIMGWFRQAPGKEREFVSAISWQSGTSTYYADSVKGRFTISRDNSKNTVYLQMNSLRAEDTATYYCAPMTLAETYYEWLISGYWGQGTQVTVSSAAA | N.A. | VQLQASGGGFVQPGGSLRLSCAASGYTSGDEIMGWFRQAPGKEREFVSAISWQSGTSTYYADSVKGRFTISRDNSKNTVYLQMNSLRAEDTATYYCAPMTLAETYYEWLISGYWGQGTQVTVSSAA | N.A. | 19.832783 | 0 | 132 | 0 | 126 | 0 | 126 | 0 | 0 | vhh h3-2 | N.A. | lama glama | N.A. | H | peptide | isoform tau-f of microtubule-associated protein tau | homo sapiens | 22 | 12 | 1 | H_only | train |
9g2a_C | 9g2a | staphylococcus aureus mazf in complex with nanobody 4 | no | toxin | 2024-07-10 | 2024-07-17 | x-ray diffraction | 2.05 | 0.307 | 0.24 | N.A. | N.A. | 0 | auth_asym_id | VHH | IGHV3 | N.A. | C | N.A. | AQVQLQESGGGLVQPGGSLRLSCAASGFTFDDYAIGWFRQAPGKEREGVSCISSSDGSTYYADSVKGRFTISSDNAKNTVYLQMNSLKSEDTAVYYCAADVWGCISYTDYGLGNLDYWGQGTQVTVSSHHHHHH | N.A. | AQVQLQESGGGLVQPGGSLRLSCAASGFTFDDYAIGWFRQAPGKEREGVSCISSSDGSTYYADSVKGRFTISSDNAKNTVYLQMNSLKSEDTAVYYCAADVWGCISYTDYGLGNLDYWGQGTQVTV | N.A. | 13.487635 | 0 | 134 | 0 | 123 | 0 | 126 | 0 | 0 | nanobody 4 | N.A. | lama glama | N.A. | A | protein | endoribonuclease mazf | staphylococcus aureus subsp. aureus n315 | 24 | 12 | 1 | H_only | train |
9g2a_D | 9g2a | staphylococcus aureus mazf in complex with nanobody 4 | no | toxin | 2024-07-10 | 2024-07-17 | x-ray diffraction | 2.05 | 0.307 | 0.24 | N.A. | N.A. | 0 | auth_asym_id | VHH | IGHV3 | N.A. | D | N.A. | AQVQLQESGGGLVQPGGSLRLSCAASGFTFDDYAIGWFRQAPGKEREGVSCISSSDGSTYYADSVKGRFTISSDNAKNTVYLQMNSLKSEDTAVYYCAADVWGCISYTDYGLGNLDYWGQGTQVTVSSHHHHHH | N.A. | QLQESGGGLVQPGGSLRLSCAASGFTFDDYAIGWFRQAPGKEREGVSCISSSDGSTYYADSVKGRFTISSDNAKNTVYLQMNSLKSEDTAVYYCAADVWGCISYTDYGLGNLDYWGQGTQVTVS | N.A. | 13.402425 | 0 | 134 | 0 | 120 | 0 | 124 | 0 | 0 | nanobody 4 | N.A. | lama glama | N.A. | B | protein | endoribonuclease mazf | staphylococcus aureus subsp. aureus n315 | 27 | 13 | 1 | H_only | train |
9g1y_C | 9g1y | staphycoccus aureus mazf in complex with nabobody 3 | no | toxin | 2024-07-10 | 2024-07-24 | x-ray diffraction | 2.7 | 0.274 | 0.216 | N.A. | N.A. | 0 | auth_asym_id | VHH | IGHV3 | N.A. | C | N.A. | AQVQLQESGGGLVQPGGSLRLSCAASGFTFDDYAIGWFRQAPGKEREGVSCISSSDGSTYYADSVKGRFTISSDNAKNTVYLQMNSLKPEDTAVYYCAADEYLCTGLAYSDYYPGKYEYDYWGQGTQVTVSSHHHHHH | N.A. | VQLQESGGGLVQPGGSLRLSCAASGFTFDDYAIGWFRQAPGKEREGVSCISSSDGSTYYADSVKGRFTISSDNAKNTVYLQMNSLKPEDTAVYYCAADEYLCTGLAYSDYYPGKYEYDYWGQGTQVTVS | N.A. | 13.912142 | 0 | 138 | 0 | 127 | 0 | 129 | 0 | 0 | nanobody 3 | N.A. | lama glama | N.A. | A;B | protein;protein | endoribonuclease mazf;endoribonuclease mazf | staphylococcus aureus;staphylococcus aureus | 22;18 | 11;9 | 1.0;0.82 | H_only | train |
9g1y_D | 9g1y | staphycoccus aureus mazf in complex with nabobody 3 | no | toxin | 2024-07-10 | 2024-07-24 | x-ray diffraction | 2.7 | 0.274 | 0.216 | N.A. | N.A. | 0 | auth_asym_id | VHH | IGHV3 | N.A. | D | N.A. | AQVQLQESGGGLVQPGGSLRLSCAASGFTFDDYAIGWFRQAPGKEREGVSCISSSDGSTYYADSVKGRFTISSDNAKNTVYLQMNSLKPEDTAVYYCAADEYLCTGLAYSDYYPGKYEYDYWGQGTQVTVSSHHHHHH | N.A. | QVQLQESGGGLVQPGGSLRLSCAASGFTFDDYAIGWFRQAPGKEREGVSCISSSDGSTYYADSVKGRFTISSDNAKNTVYLQMNSLKPEDTAVYYCAADEYLCTGLAYSDYYPGKYEYDYWGQGTQVTVSSHHH | N.A. | 14.693556 | 0 | 138 | 0 | 134 | 0 | 134 | 0 | 0 | nanobody 3 | N.A. | lama glama | N.A. | A;B | protein;protein | endoribonuclease mazf;endoribonuclease mazf | staphylococcus aureus;staphylococcus aureus | 16;24 | 8;12 | 0.8;1.0 | H_only | train |
9g2g_C | 9g2g | staphylococcus aureus mazf in complex with nanobody 5 | no | toxin | 2024-07-10 | 2024-07-24 | x-ray diffraction | 1.8 | 0.244 | 0.195 | N.A. | N.A. | 0 | auth_asym_id | VHH | IGHV3 | N.A. | C | N.A. | AQVQLQESGGGLVQPGGSLRLSCAASGFTFDNYAIGWFRQAPGKEREGVLCIGSSDGSTYYADSVKGRFTISSDNAKNTVYLQMNSLKPEDTAVYYCAADPWDSGYGCYLDYDYWGQGTQVTVSSHHHHHH | N.A. | VQLQESGGGLVQPGGSLRLSCAASGFTFDNYAIGWFRQAPGKEREGVLCIGSSDGSTYYADSVKGRFTISSDNAKNTVYLQMNSLKPEDTAVYYCAADPWDSGYGCYLDYDYWGQGTQVTVSS | N.A. | 13.650767 | 0 | 131 | 0 | 123 | 0 | 123 | 0 | 0 | nanobody 5 | N.A. | lama glama | N.A. | A;B | protein;protein | endoribonuclease mazf;endoribonuclease mazf | staphylococcus aureus;staphylococcus aureus | 19;20 | 8;10 | 0.73;1.0 | H_only | train |
9g2g_D | 9g2g | staphylococcus aureus mazf in complex with nanobody 5 | no | toxin | 2024-07-10 | 2024-07-24 | x-ray diffraction | 1.8 | 0.244 | 0.195 | N.A. | N.A. | 0 | auth_asym_id | VHH | IGHV3 | N.A. | D | N.A. | AQVQLQESGGGLVQPGGSLRLSCAASGFTFDNYAIGWFRQAPGKEREGVLCIGSSDGSTYYADSVKGRFTISSDNAKNTVYLQMNSLKPEDTAVYYCAADPWDSGYGCYLDYDYWGQGTQVTVSSHHHHHH | N.A. | QVQLQESGGGLVQPGGSLRLSCAASGFTFDNYAIGWFRQAPGKEREGVLCIGSSDGSTYYADSVKGRFTISSDNAKNTVYLQMNSLKPEDTAVYYCAADPWDSGYGCYLDYDYWGQGTQVTVSS | N.A. | 13.711273 | 0 | 131 | 0 | 124 | 0 | 124 | 0 | 0 | nanobody 5 | N.A. | lama glama | N.A. | A;B | protein;protein | endoribonuclease mazf;endoribonuclease mazf | staphylococcus aureus;staphylococcus aureus | 22;18 | 10;8 | 1.0;0.73 | H_only | train |
9ip7_D | 9ip7 | local refinement structure of segfr and 528 fv (from hl-type bispecific diabody ex3) complex | no | antitumor protein/immune system | 2024-07-10 | 2025-05-28 | electron microscopy | 3.21 | N.A. | N.A. | 40664209 | 10.1016/j.celrep.2025.115965 | 0 | auth_asym_id | scFv | N.A. | N.A. | D | N.A. | DIVMTQSPLSLPVTPGEPASISCRSSQNIVHNNGITYLEWYLQKPGQSPQLLIYKVSDRFSGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCFQGSHIPPTFGQGTKVEIKRAAAAGGGGSGGGGSGGGGSGGGGSQVQLVQSGAEVKKPGASVKVSCKASGYTFTSYWMHWVRQAPGQGLEWMGNIWPGSGGTNYAEKFKNRVTMTRDTSISTAYMELSRLRSDDTAVYYCARSGGPYFFDYWGQGTLVTVSS | N.A. | DIVMTQSPLSLPVTPGEPASISCRSSQNIVHNNGITYLEWYLQKPGQSPQLLIYKVSDRFSGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCFQGSHIPPTFGQGTKVEIKRAAAAGGGGSGGGGSGGGGSGGGGSQVQLVQSGAEVKKPGASVKVSCKASGYTFTSYWMHWVRQAPGQGLEWMGNIWPGSGGTNYAEKFKNRVTMTRDTSISTAYMELSRLRSDDTAVYYCARSGGPYFFDYWGQGTLVTVSS | N.A. | 17.284372 | 0 | 255 | 0 | 230 | 0 | 255 | 0 | 0 | 528 fv from hl-type bispecific diabody ex3 | N.A. | synthetic construct | N.A. | A | protein | epidermal growth factor receptor | homo sapiens | 44 | 23 | 0.82 | H_only | train |
9ip8_B | 9ip8 | poly-alanine model for hl-type bispecific diabody ex3 composed of 528 and okt3 fvs in ternary complex with segfr and cd3gamma-epsilon (closed conformation) | no | antitumor protein/immune system | 2024-07-10 | 2025-05-28 | electron microscopy | 3.91 | N.A. | N.A. | 40664209 | 10.1016/j.celrep.2025.115965 | 0 | auth_asym_id | VHVL+ | N.A. | N.A. | B | N.A. | MAFAAQVQLVQSGGGVVQPGRSLRLSCKASGYTFTRYTMHWVRQAPGKGLEWIGYINPSRGYTNYNQKVKDRFTISRDNSKNTAFLQMDSLRPEDTGVYFCARYYDDHYSLDYWGQGTPVTVSSAGGGGSDIVMTQSPLSLPVTPGEPASISCRSSQNIVHNNGITYLEWYLQKPGQSPQLLIYKVSDRFSGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCFQGSHIPPTFGQGTKVEIKRAAAAGGGGSGGGGSGGGGSGGGGSQVQLVQSGAEVKKPGASVKVSCKASGYTFTSYWMHWVRQAPGQGLEWMGNIWP... | N.A. | QVQLVQSGGGVVQPGRSLRLSCKASGYTFTRYTMHWVRQAPGKGLEWIGYINPSRGYTNYNQKVKDRFTISRDNSKNTAFLQMDSLRPEDTGVYFCARYYDDHYSLDYWGQGTPVTVSSAGGGGSDIVMTQSPLSLPVTPGEPASISCRSSQNIVHNNGITYLEWYLQKPGQSPQLLIYKVSDRFSGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCFQGSHIPPTFGQGTKVEIKRAAAAGGGGSGGGGSGGGGSGGGGSQVQLVQSGAEVKKPGASVKVSCKASGYTFTSYWMHWVRQAPGQGLEWMGNIWPGSGGT... | N.A. | 27.214495 | 0 | 527 | 0 | 467 | 0 | 492 | 0 | 0 | hl-type bispecific diabody ex3 | N.A. | synthetic construct | N.A. | A;C | protein;protein | epidermal growth factor receptor;t-cell surface glycoprotein cd3 gamma chain,t-cell surface glycoprotein cd3 epsilon chain | homo sapiens;homo sapiens | 42;41 | 9;9 | 0.36;0.45 | H_only | train |
9ip9_B | 9ip9 | poly-alanine model for hl-type bispecific diabody ex3 composed of 528 and okt3 fvs in ternary complex with segfr and cd3gamma-epsilon (middle conformation) | no | antitumor protein/immune system | 2024-07-10 | 2025-05-28 | electron microscopy | 3.64 | N.A. | N.A. | 40664209 | 10.1016/j.celrep.2025.115965 | 0 | auth_asym_id | VHVL+ | N.A. | N.A. | B | N.A. | MAFAAQVQLVQSGGGVVQPGRSLRLSCKASGYTFTRYTMHWVRQAPGKGLEWIGYINPSRGYTNYNQKVKDRFTISRDNSKNTAFLQMDSLRPEDTGVYFCARYYDDHYSLDYWGQGTPVTVSSAGGGGSDIVMTQSPLSLPVTPGEPASISCRSSQNIVHNNGITYLEWYLQKPGQSPQLLIYKVSDRFSGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCFQGSHIPPTFGQGTKVEIKRAAAAGGGGSGGGGSGGGGSGGGGSQVQLVQSGAEVKKPGASVKVSCKASGYTFTSYWMHWVRQAPGQGLEWMGNIWP... | N.A. | QVQLVQSGGGVVQPGRSLRLSCKASGYTFTRYTMHWVRQAPGKGLEWIGYINPSRGYTNYNQKVKDRFTISRDNSKNTAFLQMDSLRPEDTGVYFCARYYDDHYSLDYWGQGTPVTVSSAGGGGSDIVMTQSPLSLPVTPGEPASISCRSSQNIVHNNGITYLEWYLQKPGQSPQLLIYKVSDRFSGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCFQGSHIPPTFGQGTKVEIKRAAAAGGGGSGGGGSGGGGSGGGGSQVQLVQSGAEVKKPGASVKVSCKASGYTFTSYWMHWVRQAPGQGLEWMGNIWPGSGGT... | N.A. | 27.943111 | 0 | 527 | 0 | 467 | 0 | 492 | 0 | 0 | hl-type bispecific diabody ex3 | N.A. | synthetic construct | N.A. | A;C | protein;protein | epidermal growth factor receptor;t-cell surface glycoprotein cd3 gamma chain,t-cell surface glycoprotein cd3 epsilon chain | homo sapiens;homo sapiens | 41;36 | 8;6 | 0.32;0.35 | H_only | train |
9ipa_B | 9ipa | poly-alanine model for hl-type bispecific diabody ex3 composed of 528 and okt3 fvs in ternary complex with segfr and cd3gamma-epsilon (open conformation) | no | antitumor protein/immune system | 2024-07-10 | 2025-05-28 | electron microscopy | 3.85 | N.A. | N.A. | 40664209 | 10.1016/j.celrep.2025.115965 | 0 | auth_asym_id | VHVL+ | N.A. | N.A. | B | N.A. | MAFAAQVQLVQSGGGVVQPGRSLRLSCKASGYTFTRYTMHWVRQAPGKGLEWIGYINPSRGYTNYNQKVKDRFTISRDNSKNTAFLQMDSLRPEDTGVYFCARYYDDHYSLDYWGQGTPVTVSSAGGGGSDIVMTQSPLSLPVTPGEPASISCRSSQNIVHNNGITYLEWYLQKPGQSPQLLIYKVSDRFSGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCFQGSHIPPTFGQGTKVEIKRAAAAGGGGSGGGGSGGGGSGGGGSQVQLVQSGAEVKKPGASVKVSCKASGYTFTSYWMHWVRQAPGQGLEWMGNIWP... | N.A. | QVQLVQSGGGVVQPGRSLRLSCKASGYTFTRYTMHWVRQAPGKGLEWIGYINPSRGYTNYNQKVKDRFTISRDNSKNTAFLQMDSLRPEDTGVYFCARYYDDHYSLDYWGQGTPVTVSSAGGGGSDIVMTQSPLSLPVTPGEPASISCRSSQNIVHNNGITYLEWYLQKPGQSPQLLIYKVSDRFSGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCFQGSHIPPTFGQGTKVEIKRAAAAGGGGSGGGGSGGGGSGGGGSQVQLVQSGAEVKKPGASVKVSCKASGYTFTSYWMHWVRQAPGQGLEWMGNIWPGSGGT... | N.A. | 28.127563 | 0 | 527 | 0 | 467 | 0 | 492 | 0 | 0 | hl-type bispecific diabody ex3 | N.A. | synthetic construct | N.A. | A;C | protein;protein | epidermal growth factor receptor;t-cell surface glycoprotein cd3 gamma chain,t-cell surface glycoprotein cd3 epsilon chain | homo sapiens;homo sapiens | 40;33 | 8;7 | 0.33;0.41 | H_only | train |
9ipb_D | 9ipb | local refinement structure of segfr and 528 fv (from lh-type bispecific diabody ex3) complex | no | antitumor protein/immune system | 2024-07-10 | 2025-05-28 | electron microscopy | 2.93 | N.A. | N.A. | 40664209 | 10.1016/j.celrep.2025.115965 | 0 | auth_asym_id | scFv | N.A. | N.A. | D | N.A. | QVQLVQSGAEVKKPGASVKVSCKASGYTFTSYWMHWVRQAPGQGLEWMGNIWPGSGGTNYAEKFKNRVTMTRDTSISTAYMELSRLRSDDTAVYYCARSGGPYFFDYWGQGTLVTVSSGGGGSGGGGSGGGGSGGGGSDIVMTQSPLSLPVTPGEPASISCRSSQNIVHNNGITYLEWYLQKPGQSPQLLIYKVSDRFSGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCFQGSHIPPTFGQGTKVEIK | N.A. | QVQLVQSGAEVKKPGASVKVSCKASGYTFTSYWMHWVRQAPGQGLEWMGNIWPGSGGTNYAEKFKNRVTMTRDTSISTAYMELSRLRSDDTAVYYCARSGGPYFFDYWGQGTLVTVSSGGGGSGGGGSGGGGSGGGGSDIVMTQSPLSLPVTPGEPASISCRSSQNIVHNNGITYLEWYLQKPGQSPQLLIYKVSDRFSGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCFQGSHIPPTFGQGTKVEIK | N.A. | 17.202297 | 0 | 250 | 0 | 230 | 0 | 250 | 0 | 0 | 528 fv from lh-type bispecific diabody ex3 | N.A. | synthetic construct | N.A. | A | protein | epidermal growth factor receptor | homo sapiens | 37 | 19 | 0.79 | H_only | train |
9ipc_B | 9ipc | poly-alanine model for lh-type bispecific diabody ex3 composed of 528 and okt3 fvs in ternary complex with segfr and cd3gamma-epsilon (closed conformation) | no | antitumor protein/immune system | 2024-07-10 | 2025-05-28 | electron microscopy | 3.4 | N.A. | N.A. | 40664209 | 10.1016/j.celrep.2025.115965 | 0 | auth_asym_id | VHVL+ | N.A. | N.A. | B | N.A. | MAFAADIQMTQSPSSLSASVGDRVTITCSASSSVSYMNWYQQTPGKAPKRWIYDTSKLASGVPSRFSGSGSGTDYTFTISSLQPEDIATYYCQQWSSNPFTFGQGTKLQITSGGGGQVQLVQSGAEVKKPGASVKVSCKASGYTFTSYWMHWVRQAPGQGLEWMGNIWPGSGGTNYAEKFKNRVTMTRDTSISTAYMELSRLRSDDTAVYYCARSGGPYFFDYWGQGTLVTVSSGGGGSGGGGSGGGGSGGGGSDIVMTQSPLSLPVTPGEPASISCRSSQNIVHNNGITYLEWYLQKPGQSPQLLIYKVSDRFSGVPDR... | N.A. | DIQMTQSPSSLSASVGDRVTITCSASSSVSYMNWYQQTPGKAPKRWIYDTSKLASGVPSRFSGSGSGTDYTFTISSLQPEDIATYYCQQWSSNPFTFGQGTKLQITSGGGGQVQLVQSGAEVKKPGASVKVSCKASGYTFTSYWMHWVRQAPGQGLEWMGNIWPGSGGTNYAEKFKNRVTMTRDTSISTAYMELSRLRSDDTAVYYCARSGGPYFFDYWGQGTLVTVSSGGGGSGGGGSGGGGSGGGGSDIVMTQSPLSLPVTPGEPASISCRSSQNIVHNNGITYLEWYLQKPGQSPQLLIYKVSDRFSGVPDRFSGSG... | N.A. | 24.5451 | 0 | 519 | 0 | 465 | 0 | 485 | 0 | 0 | lh-type bispecific diabody ex3 | N.A. | synthetic construct | N.A. | A;C | protein;protein | epidermal growth factor receptor;t-cell surface glycoprotein cd3 gamma chain,t-cell surface glycoprotein cd3 epsilon chain | homo sapiens;homo sapiens | 41;22 | 13;5 | 0.48;0.42 | H_only | train |
9ipe_B | 9ipe | poly-alanine model for lh-type bispecific diabody ex3 composed of 528 and okt3 fvs in ternary complex with segfr and cd3gamma-epsilon (open conformation) | no | antitumor protein/immune system | 2024-07-10 | 2025-05-28 | electron microscopy | 3.31 | N.A. | N.A. | 40664209 | 10.1016/j.celrep.2025.115965 | 0 | auth_asym_id | VHVL+ | N.A. | N.A. | B | N.A. | MAFAADIQMTQSPSSLSASVGDRVTITCSASSSVSYMNWYQQTPGKAPKRWIYDTSKLASGVPSRFSGSGSGTDYTFTISSLQPEDIATYYCQQWSSNPFTFGQGTKLQITSGGGGQVQLVQSGAEVKKPGASVKVSCKASGYTFTSYWMHWVRQAPGQGLEWMGNIWPGSGGTNYAEKFKNRVTMTRDTSISTAYMELSRLRSDDTAVYYCARSGGPYFFDYWGQGTLVTVSSGGGGSGGGGSGGGGSGGGGSDIVMTQSPLSLPVTPGEPASISCRSSQNIVHNNGITYLEWYLQKPGQSPQLLIYKVSDRFSGVPDR... | N.A. | DIQMTQSPSSLSASVGDRVTITCSASSSVSYMNWYQQTPGKAPKRWIYDTSKLASGVPSRFSGSGSGTDYTFTISSLQPEDIATYYCQQWSSNPFTFGQGTKLQITSGGGGQVQLVQSGAEVKKPGASVKVSCKASGYTFTSYWMHWVRQAPGQGLEWMGNIWPGSGGTNYAEKFKNRVTMTRDTSISTAYMELSRLRSDDTAVYYCARSGGPYFFDYWGQGTLVTVSSGGGGSGGGGSGGGGSGGGGSDIVMTQSPLSLPVTPGEPASISCRSSQNIVHNNGITYLEWYLQKPGQSPQLLIYKVSDRFSGVPDRFSGSG... | N.A. | 27.425957 | 0 | 519 | 0 | 465 | 0 | 485 | 0 | 0 | lh-type bispecific diabody ex3 | N.A. | synthetic construct | N.A. | A;C | protein;protein | epidermal growth factor receptor;t-cell surface glycoprotein cd3 gamma chain,t-cell surface glycoprotein cd3 epsilon chain | homo sapiens;homo sapiens | 42;48 | 11;7 | 0.41;0.35 | H_only | train |
9clp_H_L | 9clp | structure of ecarin from the venom of kenyan saw-scaled viper in complex with the fab of neutralizing antibody h11 | no | hydrolase | 2024-07-12 | 2024-09-11 | electron microscopy | 3.43 | N.A. | N.A. | 39195771 | 10.3390/toxins16080361 | 0 | auth_asym_id | VH:VL | IGHV1 | IGLV2 | H | L | QVQLVQSGAEVKKPGASVKVSCKASGYTFTGYYMHWVRQAPGQGLEWMGWINPNSGGTNYAQKFQGRVTMTRDTSISTAYMELSRLRSDDTAVYYCAREWDDDDFSFDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKK | QSALTQPASVSGSPGQSITISCTGTSSDVGGYNYVSWYQQHPGKAPKLMIYEVSNRPSGVSNRFSGSKSGNTASLTISGLQAEDEADYYCSSYTSSSTLVVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHKSYSCQVTHEGSTVEKTVAPTECS | QVQLVQSGAEVKKPGASVKVSCKASGYTFTGYYMHWVRQAPGQGLEWMGWINPNSGGTNYAQKFQGRVTMTRDTSISTAYMELSRLRSDDTAVYYCAREWDDDDFSFDYWGQGTLVTVSS | QSALTQPASVSGSPGQSITISCTGTSSDVGGYNYVSWYQQHPGKAPKLMIYEVSNRPSGVSNRFSGSKSGNTASLTISGLQAEDEADYYCSSYTSSSTLVVFGGGTKLTV | 13.907407 | 13.319599 | 217 | 217 | 120 | 110 | 120 | 110 | 47 | h11 fab heavy chain | h11 fab light chain | homo sapiens | homo sapiens | A | protein | zinc metalloproteinase-disintegrin-like ecarin | echis carinatus | 33 | 17 | 0.89 | HL | train |
9clw_N | 9clw | cryo-em structure of gq-coupled ffa2 in complex with tug-1375 and 4-cmtb | no | membrane protein | 2024-07-12 | 2025-06-25 | electron microscopy | 3.19 | N.A. | N.A. | 40533560 | 10.1038/s41586-025-09186-6 | 0 | auth_asym_id | scFv | N.A. | N.A. | N | N.A. | VQLVESGGGLVQPGGSRKLSCSASGFAFSSFGMHWVRQAPEKGLEWVAYISSGSGTIYYADTVKGRFTISRDDPKNTLFLQMTSLRSEDTAMYYCVRSIYYYGSSPFDFWGQGTTLTVSAGGGGSGGGGSGGGGSADIVMTQATSSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLTISRLEAEDVGVYYCMQHLEYPLTFGAGTKLELLEENLYFQGASHHHHHHHH | N.A. | VQLVESGGGLVQPGGSRKLSCSASGFAFSSFGMHWVRQAPEKGLEWVAYISSGSGTIYYADTVKGRFTISRDDPKNTLFLQMTSLRSEDTAMYYCVRSIYYYGSSPFDFWGQGTTLTVSAGGGGSGGGGSGGGGSADIVMTQATSSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLTISRLEAEDVGVYYCMQHLEYPLTFGAGTKLEL | N.A. | 17.255848 | 0 | 266 | 0 | 231 | 0 | 247 | 0 | 0 | scfv16 | N.A. | mus musculus | N.A. | A;B | protein;protein | guanine nucleotide-binding protein g(q) subunit alpha;guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 | homo sapiens;homo sapiens | 32;25 | 20;10 | 0.95;0.77 | H_only | train |
9cm3_N | 9cm3 | cryo-em structure of gq-coupled ffa2 in complex with tug-1375 and compound 187 | no | membrane protein | 2024-07-12 | 2025-06-25 | electron microscopy | 3.06 | N.A. | N.A. | 40533560 | 10.1038/s41586-025-09186-6 | 0 | auth_asym_id | scFv | N.A. | N.A. | N | N.A. | VQLVESGGGLVQPGGSRKLSCSASGFAFSSFGMHWVRQAPEKGLEWVAYISSGSGTIYYADTVKGRFTISRDDPKNTLFLQMTSLRSEDTAMYYCVRSIYYYGSSPFDFWGQGTTLTVSAGGGGSGGGGSGGGGSADIVMTQATSSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLTISRLEAEDVGVYYCMQHLEYPLTFGAGTKLELLEENLYFQGASHHHHHHHH | N.A. | VQLVESGGGLVQPGGSRKLSCSASGFAFSSFGMHWVRQAPEKGLEWVAYISSGSGTIYYADTVKGRFTISRDDPKNTLFLQMTSLRSEDTAMYYCVRSIYYYGSSPFDFWGQGTTLTVSAGGGGSGGGGSGGGGSADIVMTQATSSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLTISRLEAEDVGVYYCMQHLEYPLTFGAGTKLEL | N.A. | 17.10581 | 0 | 266 | 0 | 231 | 0 | 247 | 0 | 0 | scfv16 | N.A. | mus musculus | N.A. | B;A | protein;protein | guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1;guanine nucleotide-binding protein g(q) subunit alpha | homo sapiens;homo sapiens | 23;34 | 9;20 | 0.75;0.87 | H_only | train |
9cm7_N | 9cm7 | cryo-em structure of gi-coupled ffa2 in complex with tug-1375 and az-1729 | yes | membrane protein | 2024-07-12 | 2025-06-25 | electron microscopy | 3.29 | N.A. | N.A. | 40533560 | 10.1038/s41586-025-09186-6 | 0 | auth_asym_id | scFv | N.A. | N.A. | N | N.A. | VQLVESGGGLVQPGGSRKLSCSASGFAFSSFGMHWVRQAPEKGLEWVAYISSGSGTIYYADTVKGRFTISRDDPKNTLFLQMTSLRSEDTAMYYCVRSIYYYGSSPFDFWGQGTTLTVSAGGGGSGGGGSGGGGSADIVMTQATSSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLTISRLEAEDVGVYYCMQHLEYPLTFGAGTKLELLEENLYFQGASHHHHHHHH | N.A. | VQLVESGGGLVQPGGSRKLSCSASGFAFSSFGMHWVRQAPEKGLEWVAYISSGSGTIYYADTVKGRFTISRDDPKNTLFLQMTSLRSEDTAMYYCVRSIYYYGSSPFDFWGQGTTLTVSAGGGGSGGGGSGGGGSADIVMTQATSSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLTISRLEAEDVGVYYCMQHLEYPLTFGAGTKLEL | N.A. | 17.222773 | 0 | 266 | 0 | 230 | 0 | 247 | 0 | 0 | scfv16 | N.A. | mus musculus | N.A. | A;B | protein;protein | guanine nucleotide-binding protein g(i) subunit alpha-1;guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 | homo sapiens;homo sapiens | 35;24 | 21;10 | 0.91;0.83 | H_only | train |
9g3e_C | 9g3e | cryo-em structure of sbma in the inward-facing-wide conformation bound to 2 sybodies | no | transport protein | 2024-07-12 | 2025-07-23 | electron microscopy | 3.14 | N.A. | N.A. | N.A. | N.A. | 0 | auth_asym_id | VH | IGHV3 | N.A. | C | N.A. | MAGSSSQVQLVESGGGLVQAGGSLRLSCAASGFPVIANVMYWYRQAPGKEREWVAAIDSSGEYAYYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCYVKVGSHYWGQGTQVTVSAGRAGEQRLISEEDLNSAVDHHHHHH | N.A. | VQLVESGGGLVQAGGSLRLSCAASGFPVIANVMYWYRQAPGKEREWVAAIDSSGEYAYYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCYVKVGSHYWGQGTQVTVSA | N.A. | 13.406299 | 0 | 146 | 0 | 114 | 0 | 114 | 0 | 0 | sybody 2 | N.A. | synthetic construct | N.A. | N.A. | N.A. | N.A. | N.A. | 0 | 0 | 0 | H_only | train |
9g3e_D | 9g3e | cryo-em structure of sbma in the inward-facing-wide conformation bound to 2 sybodies | no | transport protein | 2024-07-12 | 2025-07-23 | electron microscopy | 3.14 | N.A. | N.A. | N.A. | N.A. | 0 | auth_asym_id | VH | IGHV3 | N.A. | D | N.A. | MAGSSSQVQLVESGGGLVQAGGSLRLSCAASGFPVIANVMYWYRQAPGKEREWVAAIDSSGEYAYYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCYVKVGSHYWGQGTQVTVSAGRAGEQRLISEEDLNSAVDHHHHHH | N.A. | QVQLVESGGGLVQAGGSLRLSCAASGFPVIANVMYWYRQAPGKEREWVAAIDSSGEYAYYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCYVKVGSHYWGQGTQVTVSA | N.A. | 13.466787 | 0 | 146 | 0 | 115 | 0 | 115 | 0 | 0 | sybody 2 | N.A. | synthetic construct | N.A. | N.A. | N.A. | N.A. | N.A. | 0 | 0 | 0 | H_only | train |
9iqt_E | 9iqt | structure of niacin-hca2-gi | no | membrane protein/immune system | 2024-07-13 | 2024-10-02 | electron microscopy | 2.9 | N.A. | N.A. | 39299383 | 10.1016/j.jmb.2024.168795 | 0 | auth_asym_id | scFv | N.A. | N.A. | E | N.A. | DVQLVESGGGLVQPGGSRKLSCSASGFAFSSFGMHWVRQAPEKGLEWVAYISSGSGTIYYADTVKGRFTISRDDPKNTLFLQMTSLRSEDTAMYYCVRSIYYYGSSPFDFWGQGTTLTVSSGGGGSGGGGSGGGGSDIVMTQATSSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLTISRLEAEDVGVYYCMQHLEYPLTFGAGTKLEL | N.A. | VQLVESGGGLVQPGGSRKLSCSASGFAFSSFGMHWVRQAPEKGLEWVAYISSGSGTIYYADTVKGRFTISRDDPKNTLFLQMTSLRSEDTAMYYCVRSIYYYGSSPFDFWGQGTTLTVSSGGGGSGGGGSGGGGSDIVMTQATSSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLTISRLEAEDVGVYYCMQHLEYPLTFGAGTKLEL | N.A. | 16.987583 | 0 | 247 | 0 | 232 | 0 | 246 | 0 | 0 | scfv16 | N.A. | homo sapiens | N.A. | A;B | protein;protein | guanine nucleotide-binding protein g(i) subunit alpha-1;guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 | homo sapiens;homo sapiens | 36;23 | 21;9 | 0.88;0.82 | H_only | train |
9cmc_A_B | 9cmc | crystal structure of the peanut allergen ara h 2 with two human derived fab antibodies 22s1 and 23p34 | no | allergen | 2024-07-14 | 2025-06-11 | x-ray diffraction | 2.95 | 0.253 | 0.213 | 40498852 | 10.1126/scitranslmed.adw4148 | 0 | auth_asym_id | VH:VL | IGHV3 | IGKV2 | A | B | QVQLVESGGLVVQPGGSLRLSCEASGFTFDDYTMHWVRQSPQKGLEWVSLIRWDGSRTEYADSVKGRFTISRDNSKNSLYLQMNTLRADDSAFYFCVKDGGLRYFDSWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDKTH | DVVMTQSPLSLPVTPGEPASISCRSSQSLLHSNGIHYLDWYLQKPGQSPQLLIYLGSKRASGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCMQSLQTFTFGPGTKVDIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | QLVESGGLVVQPGGSLRLSCEASGFTFDDYTMHWVRQSPQKGLEWVSLIRWDGSRTEYADSVKGRFTISRDNSKNSLYLQMNTLRADDSAFYFCVKDGGLRYFDSWGQGTLVTVSS | VVMTQSPLSLPVTPGEPASISCRSSQSLLHSNGIHYLDWYLQKPGQSPQLLIYLGSKRASGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCMQSLQTFTFGPGTKVDIK | 13.562343 | 13.402199 | 225 | 218 | 116 | 110 | 116 | 110 | 31 | fab 23p34 heavy chain | fab 23p34 light chain | homo sapiens | homo sapiens | E | protein | ara h 2 allergen | arachis hypogaea | 43 | 20 | 0.77 | HL | train |
9cmc_C_D | 9cmc | crystal structure of the peanut allergen ara h 2 with two human derived fab antibodies 22s1 and 23p34 | no | allergen | 2024-07-14 | 2025-06-11 | x-ray diffraction | 2.95 | 0.253 | 0.213 | 40498852 | 10.1126/scitranslmed.adw4148 | 0 | auth_asym_id | FabH:FabL | IGHV3 | IGKV1 | C | D | QVQLVQSGGGLVKPGGSLRLSCTASGFSFSDSYMSWIRQAPGKGLEWLTYISGSGEIISYADSVKGRFTISRDNAKKSVYLQMDSLRAEDTAVYYCARPSDYFETSEELDWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDKTH | EIVMTQSPSSLSASVGDRVTITCRASQSISTYLNWYQQKPGKAPNLLIYAASSLHSGVPSRFRGSGSGTDFTLTITSLQPDDFATYYCHQSYSAPRTFGQGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | QVQLVQSGGGLVKPGGSLRLSCTASGFSFSDSYMSWIRQAPGKGLEWLTYISGSGEIISYADSVKGRFTISRDNAKKSVYLQMDSLRAEDTAVYYCARPSDYFETSEELDWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKS | EIVMTQSPSSLSASVGDRVTITCRASQSISTYLNWYQQKPGKAPNLLIYAASSLHSGVPSRFRGSGSGTDFTLTITSLQPDDFATYYCHQSYSAPRTFGQGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | 22.990292 | 22.786314 | 228 | 214 | 217 | 214 | 223 | 214 | 98 | fab 22s1 heavy chain | fab 22s1 light chain | homo sapiens | homo sapiens | E | protein | ara h 2 allergen | arachis hypogaea | 41 | 20 | 0.87 | HL | train |
9cmc_F_G | 9cmc | crystal structure of the peanut allergen ara h 2 with two human derived fab antibodies 22s1 and 23p34 | no | allergen | 2024-07-14 | 2025-06-11 | x-ray diffraction | 2.95 | 0.253 | 0.213 | 40498852 | 10.1126/scitranslmed.adw4148 | 0 | auth_asym_id | FabH:FabL | IGHV3 | IGKV2 | F | G | QVQLVESGGLVVQPGGSLRLSCEASGFTFDDYTMHWVRQSPQKGLEWVSLIRWDGSRTEYADSVKGRFTISRDNSKNSLYLQMNTLRADDSAFYFCVKDGGLRYFDSWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDKTH | DVVMTQSPLSLPVTPGEPASISCRSSQSLLHSNGIHYLDWYLQKPGQSPQLLIYLGSKRASGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCMQSLQTFTFGPGTKVDIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | QVQLVESGGLVVQPGGSLRLSCEASGFTFDDYTMHWVRQSPQKGLEWVSLIRWDGSRTEYADSVKGRFTISRDNSKNSLYLQMNTLRADDSAFYFCVKDGGLRYFDSWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEP | DVVMTQSPLSLPVTPGEPASISCRSSQSLLHSNGIHYLDWYLQKPGQSPQLLIYLGSKRASGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCMQSLQTFTFGPGTKVDIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSS | 21.600538 | 16.240683 | 225 | 218 | 207 | 139 | 218 | 181 | 61 | fab 23p34 heavy chain | fab 23p34 light chain | homo sapiens | homo sapiens | J | protein | ara h 2 allergen | arachis hypogaea | 42 | 19 | 0.76 | HL | train |
9cmc_H_I | 9cmc | crystal structure of the peanut allergen ara h 2 with two human derived fab antibodies 22s1 and 23p34 | no | allergen | 2024-07-14 | 2025-06-11 | x-ray diffraction | 2.95 | 0.253 | 0.213 | 40498852 | 10.1126/scitranslmed.adw4148 | 0 | auth_asym_id | FabH:FabL | IGHV3 | IGKV1 | H | I | QVQLVQSGGGLVKPGGSLRLSCTASGFSFSDSYMSWIRQAPGKGLEWLTYISGSGEIISYADSVKGRFTISRDNAKKSVYLQMDSLRAEDTAVYYCARPSDYFETSEELDWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDKTH | EIVMTQSPSSLSASVGDRVTITCRASQSISTYLNWYQQKPGKAPNLLIYAASSLHSGVPSRFRGSGSGTDFTLTITSLQPDDFATYYCHQSYSAPRTFGQGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | QVQLVQSGGGLVKPGGSLRLSCTASGFSFSDSYMSWIRQAPGKGLEWLTYISGSGEIISYADSVKGRFTISRDNAKKSVYLQMDSLRAEDTAVYYCARPSDYFETSEELDWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPK | EIVMTQSPSSLSASVGDRVTITCRASQSISTYLNWYQQKPGKAPNLLIYAASSLHSGVPSRFRGSGSGTDFTLTITSLQPDDFATYYCHQSYSAPRTFGQGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE | 22.77719 | 22.702713 | 228 | 214 | 215 | 213 | 222 | 213 | 97 | fab 22s1 heavy chain | fab 22s1 light chain | homo sapiens | homo sapiens | J | protein | ara h 2 allergen | arachis hypogaea | 43 | 20 | 0.83 | HL | train |
9cmc_K_L | 9cmc | crystal structure of the peanut allergen ara h 2 with two human derived fab antibodies 22s1 and 23p34 | no | allergen | 2024-07-14 | 2025-06-11 | x-ray diffraction | 2.95 | 0.253 | 0.213 | 40498852 | 10.1126/scitranslmed.adw4148 | 0 | auth_asym_id | FabH:FabL | IGHV3 | IGKV2 | K | L | QVQLVESGGLVVQPGGSLRLSCEASGFTFDDYTMHWVRQSPQKGLEWVSLIRWDGSRTEYADSVKGRFTISRDNSKNSLYLQMNTLRADDSAFYFCVKDGGLRYFDSWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDKTH | DVVMTQSPLSLPVTPGEPASISCRSSQSLLHSNGIHYLDWYLQKPGQSPQLLIYLGSKRASGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCMQSLQTFTFGPGTKVDIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | QVQLVESGGLVVQPGGSLRLSCEASGFTFDDYTMHWVRQSPQKGLEWVSLIRWDGSRTEYADSVKGRFTISRDNSKNSLYLQMNTLRADDSAFYFCVKDGGLRYFDSWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEP | DVVMTQSPLSLPVTPGEPASISCRSSQSLLHSNGIHYLDWYLQKPGQSPQLLIYLGSKRASGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCMQSLQTFTFGPGTKVDIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE | 22.039856 | 22.637838 | 225 | 218 | 212 | 217 | 218 | 217 | 87 | fab 23p34 heavy chain | fab 23p34 light chain | homo sapiens | homo sapiens | O | protein | ara h 2 allergen | arachis hypogaea | 40 | 16 | 0.76 | HL | train |
9cmc_M_N | 9cmc | crystal structure of the peanut allergen ara h 2 with two human derived fab antibodies 22s1 and 23p34 | no | allergen | 2024-07-14 | 2025-06-11 | x-ray diffraction | 2.95 | 0.253 | 0.213 | 40498852 | 10.1126/scitranslmed.adw4148 | 0 | auth_asym_id | FabH:FabL | IGHV3 | IGKV1 | M | N | QVQLVQSGGGLVKPGGSLRLSCTASGFSFSDSYMSWIRQAPGKGLEWLTYISGSGEIISYADSVKGRFTISRDNAKKSVYLQMDSLRAEDTAVYYCARPSDYFETSEELDWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDKTH | EIVMTQSPSSLSASVGDRVTITCRASQSISTYLNWYQQKPGKAPNLLIYAASSLHSGVPSRFRGSGSGTDFTLTITSLQPDDFATYYCHQSYSAPRTFGQGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | QVQLVQSGGGLVKPGGSLRLSCTASGFSFSDSYMSWIRQAPGKGLEWLTYISGSGEIISYADSVKGRFTISRDNAKKSVYLQMDSLRAEDTAVYYCARPSDYFETSEELDWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKS | EIVMTQSPSSLSASVGDRVTITCRASQSISTYLNWYQQKPGKAPNLLIYAASSLHSGVPSRFRGSGSGTDFTLTITSLQPDDFATYYCHQSYSAPRTFGQGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRG | 22.924557 | 22.639969 | 228 | 214 | 217 | 212 | 223 | 212 | 99 | fab 22s1 heavy chain | fab 22s1 light chain | homo sapiens | homo sapiens | O | protein | ara h 2 allergen | arachis hypogaea | 43 | 20 | 0.87 | HL | train |
9cmc_P_Q | 9cmc | crystal structure of the peanut allergen ara h 2 with two human derived fab antibodies 22s1 and 23p34 | no | allergen | 2024-07-14 | 2025-06-11 | x-ray diffraction | 2.95 | 0.253 | 0.213 | 40498852 | 10.1126/scitranslmed.adw4148 | 0 | auth_asym_id | FabH:FabL | IGHV3 | IGKV2 | P | Q | QVQLVESGGLVVQPGGSLRLSCEASGFTFDDYTMHWVRQSPQKGLEWVSLIRWDGSRTEYADSVKGRFTISRDNSKNSLYLQMNTLRADDSAFYFCVKDGGLRYFDSWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDKTH | DVVMTQSPLSLPVTPGEPASISCRSSQSLLHSNGIHYLDWYLQKPGQSPQLLIYLGSKRASGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCMQSLQTFTFGPGTKVDIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | QVQLVESGGLVVQPGGSLRLSCEASGFTFDDYTMHWVRQSPQKGLEWVSLIRWDGSRTEYADSVKGRFTISRDNSKNSLYLQMNTLRADDSAFYFCVKDGGLRYFDSWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPK | DVVMTQSPLSLPVTPGEPASISCRSSQSLLHSNGIHYLDWYLQKPGQSPQLLIYLGSKRASGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCMQSLQTFTFGPGTKVDIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE | 22.166615 | 22.533934 | 225 | 218 | 213 | 217 | 219 | 217 | 89 | fab 23p34 heavy chain | fab 23p34 light chain | homo sapiens | homo sapiens | T | protein | ara h 2 allergen | arachis hypogaea | 42 | 18 | 0.75 | HL | train |
9cmc_R_V | 9cmc | crystal structure of the peanut allergen ara h 2 with two human derived fab antibodies 22s1 and 23p34 | no | allergen | 2024-07-14 | 2025-06-11 | x-ray diffraction | 2.95 | 0.253 | 0.213 | 40498852 | 10.1126/scitranslmed.adw4148 | 0 | auth_asym_id | FabH:FabL | IGHV3 | IGKV1 | R | V | QVQLVQSGGGLVKPGGSLRLSCTASGFSFSDSYMSWIRQAPGKGLEWLTYISGSGEIISYADSVKGRFTISRDNAKKSVYLQMDSLRAEDTAVYYCARPSDYFETSEELDWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDKTH | EIVMTQSPSSLSASVGDRVTITCRASQSISTYLNWYQQKPGKAPNLLIYAASSLHSGVPSRFRGSGSGTDFTLTITSLQPDDFATYYCHQSYSAPRTFGQGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | QVQLVQSGGGLVKPGGSLRLSCTASGFSFSDSYMSWIRQAPGKGLEWLTYISGSGEIISYADSVKGRFTISRDNAKKSVYLQMDSLRAEDTAVYYCARPSDYFETSEELDWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPK | EIVMTQSPSSLSASVGDRVTITCRASQSISTYLNWYQQKPGKAPNLLIYAASSLHSGVPSRFRGSGSGTDFTLTITSLQPDDFATYYCHQSYSAPRTFGQGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE | 22.791151 | 22.724174 | 228 | 214 | 216 | 213 | 222 | 213 | 97 | fab 22s1 heavy chain | fab 22s1 light chain | homo sapiens | homo sapiens | T | protein | ara h 2 allergen | arachis hypogaea | 43 | 21 | 0.88 | HL | train |
9g48_C | 9g48 | staphylococcus aureus mazf in complex with nanobody 6 | no | toxin | 2024-07-15 | 2024-07-24 | x-ray diffraction | 2.14 | 0.245 | 0.216 | N.A. | N.A. | 0 | auth_asym_id | VHH | IGHV3 | N.A. | C | N.A. | AQVQLQESGGGLVQPGGSLRLSCAASGFTLDYYAIGWFRQAPGKEREGVSCISSSDGSTYYADSVKGRFTISRDNAKNTVYLEMNSLKPEDTAVYYCAAEAPPLLYDSGSYYCQPLYQYDYWGQGTQVTVSSHHHHHH | N.A. | QLQESGGGLVQPGGSLRLSCAASGFTLDYYAIGWFRQAPGKEREGVSCISSSDGSTYYADSVKGRFTISRDNAKNTVYLEMNSLKPEDTAVYYCAAEAPPLLYDSGSYYCQPLYQYDYWGQGTQVTVSS | N.A. | 13.808178 | 0 | 138 | 0 | 129 | 0 | 129 | 0 | 0 | nanobody 6 | N.A. | lama glama | N.A. | A;B | protein;protein | endoribonuclease mazf;endoribonuclease mazf | staphylococcus aureus;staphylococcus aureus | 25;16 | 12;7 | 1.0;0.7 | H_only | train |
9g48_D | 9g48 | staphylococcus aureus mazf in complex with nanobody 6 | no | toxin | 2024-07-15 | 2024-07-24 | x-ray diffraction | 2.14 | 0.245 | 0.216 | N.A. | N.A. | 0 | auth_asym_id | VHH | IGHV3 | N.A. | D | N.A. | AQVQLQESGGGLVQPGGSLRLSCAASGFTLDYYAIGWFRQAPGKEREGVSCISSSDGSTYYADSVKGRFTISRDNAKNTVYLEMNSLKPEDTAVYYCAAEAPPLLYDSGSYYCQPLYQYDYWGQGTQVTVSSHHHHHH | N.A. | QLQESGGGLVQPGGSLRLSCAASGFTLDYYAIGWFRQAPGKEREGVSCISSSDGSTYYADSVKGRFTISRDNAKNTVYLEMNSLKPEDTAVYYCAAEAPPLLYDSGSYYCQPLYQYDYWGQGTQVTVSSH | N.A. | 13.96214 | 0 | 138 | 0 | 130 | 0 | 130 | 0 | 0 | nanobody 6 | N.A. | lama glama | N.A. | A;B | protein;protein | endoribonuclease mazf;endoribonuclease mazf | staphylococcus aureus;staphylococcus aureus | 15;25 | 7;12 | 0.78;1.0 | H_only | train |
9g4g_B | 9g4g | staphylococcus aureus mazf in complex with nanobody 9 | no | toxin | 2024-07-15 | 2024-07-24 | x-ray diffraction | 2.9 | 0.303 | 0.253 | N.A. | N.A. | 0 | auth_asym_id | VHH | IGHV3 | N.A. | B | N.A. | QVQLQESGGGLVQPGGSLRLSCVVSGFTLDDYAIGWFRQAPGKEREGVSCISSSGDSTNYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCAADPFPGVCTYASSRIYEHDYWGQGTQVTVSSHHHHHH | N.A. | QVQLQESGGGLVQPGGSLRLSCVVSGFTLDDYAIGWFRQAPGKEREGVSCISSSGDSTNYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCAADPFPGVCTYASSRIYEHDYWGQGTQVTVSSH | N.A. | 13.897519 | 0 | 134 | 0 | 129 | 0 | 129 | 0 | 0 | nanobody 9 | N.A. | lama glama | N.A. | A | protein | endoribonuclease mazf | staphylococcus aureus | 24 | 12 | 0.92 | H_only | train |
9cmi_H_L | 9cmi | cryo-em structure of human claudin-4 complex with clostridium perfringens enterotoxin, sfab cop-1, and nanobody | no | membrane protein | 2024-07-15 | 2024-08-07 | electron microscopy | 2.83 | N.A. | N.A. | 39383874 | 10.1016/j.str.2024.09.015 | 0 | auth_asym_id | FabH:FabL | IGHV3 | IGKV1 | H | L | MKKNIAFLLASMFVFSIATNAYAEISEVQLVESGGGLVQPGGSLRLSCAASGFNFSSSYIHWVRQAPGKGLEWVASISSSSGSTSYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARWFHPWWWWEYLFRGAIDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHT | MKKNIAFLLASMFVFSIATNAYASDIQMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASSLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQSSSSLITFGQGTKVEIKRTVAAPSVFIFPPSDSQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | EVQLVESGGGLVQPGGSLRLSCAASGFNFSSSYIHWVRQAPGKGLEWVASISSSSGSTSYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARWFHPWWWWEYLFRGAIDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK | DIQMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASSLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQSSSSLITFGQGTKVEIKRTVAAPSVFIFPPSDSQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE | 23.756641 | 22.343353 | 261 | 238 | 228 | 213 | 228 | 213 | 106 | cop-1 sfab heavy chain | cop-1 sfab light chain | homo sapiens | homo sapiens | A | protein | claudin-4 | homo sapiens | 43 | 20 | 0.83 | HL | train |
9cmi_K | 9cmi | cryo-em structure of human claudin-4 complex with clostridium perfringens enterotoxin, sfab cop-1, and nanobody | no | membrane protein | 2024-07-15 | 2024-08-07 | electron microscopy | 2.83 | N.A. | N.A. | 39383874 | 10.1016/j.str.2024.09.015 | 0 | auth_asym_id | VHH | IGHV3 | N.A. | K | N.A. | GSVQLQESGGGLVQPGGSLRLSCAASGRTISRYAMSWFRQAPGKEREFVAVARRSGDGAFYADSVQGRFTVSRDDAKNTVYLQMNSLKPEDTAVYYCAIDSDTFYSGSYDYWGQGTQVTVS | N.A. | LQESGGGLVQPGGSLRLSCAASGRTISRYAMSWFRQAPGKEREFVAVARRSGDGAFYADSVQGRFTVSRDDAKNTVYLQMNSLKPEDTAVYYCAIDSDTFYSGSYDYWGQGTQVTV | N.A. | 13.475628 | 0 | 121 | 0 | 116 | 0 | 116 | 0 | 0 | anti-fab nanobody | N.A. | homo sapiens | N.A. | N.A. | N.A. | N.A. | N.A. | 0 | 0 | 0 | H_only | train |
9cn2_B | 9cn2 | human astrovirus 2 spike bound to neutralizing scfv 4b6 | no | viral protein | 2024-07-15 | 2024-12-25 | x-ray diffraction | 2.67 | 0.259 | 0.212 | 39846739 | 10.1128/jvi.01619-24 | 0 | auth_asym_id | scFv | N.A. | N.A. | B | N.A. | QVQLKESGPGLVAPSQSLSITCTVSGFSLTSYGVHWVRQPPGKGLEWLGVIWADGSTNYNSALMSRLSISKDNSKSQVFLKMNSLQTDDTAMYYCARWTYGDYFDYWGQGTTLTVSSGGSGGGGSGGGGSGGGGSDIQMTQTTSSLSASLGDRVTISCSASQGISNYLNWYQQKPDGTVKLLIYYTSSLHSGVPSRFSGSGSGTDYSLTISNLEPEDIATYYCQQYSKLPYTFGGGTKLEIKRASLVPR | N.A. | QVQLKESGPGLVAPSQSLSITCTVSGFSLTSYGVHWVRQPPGKGLEWLGVIWADGSTNYNSALMSRLSISKDNSKSQVFLKMNSLQTDDTAMYYCARWTYGDYFDYWGQGTTLTVSSGGSGGGGSGGGGSGGGGSDIQMTQTTSSLSASLGDRVTISCSASQGISNYLNWYQQKPDGTVKLLIYYTSSLHSGVPSRFSGSGSGTDYSLTISNLEPEDIATYYCQQYSKLPYTFGGGTKLEIK | N.A. | 17.334726 | 0 | 249 | 0 | 225 | 0 | 242 | 0 | 0 | neutralizing scfv 4b6 | N.A. | mus musculus | N.A. | A | protein | spike protein | human astrovirus 2 | 19 | 11 | 1 | H_only | train |
9g4e_C_D | 9g4e | cryoem structure of the proton-dependent antibacterial peptide transporter sbma in complex with fabs11-1 in lipid nanodiscs at ph 5.5, inward-open state | no | transport protein | 2024-07-15 | 2025-07-30 | electron microscopy | 3.44 | N.A. | N.A. | N.A. | N.A. | 0 | auth_asym_id | FabH:FabL | IGHV1 | IGKV1 | C | D | LKLLDSGAELVKPGASVKLSCTASGFNIKDTYMYWVKQRPDQGLEWIGRIDPANGNSKYDPKFQGKATITADTSSNTAYLQVSSLTSEDTAVYYCARWLVRGRRGTMDYWGQGTSVTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPSQSITCNVAHPASSTKVDKKIEPRGPTIKPCPPCKCP | DIVMTQSPAILSASPGEKVTMTCRASSSVSYMHWYQQKPGSSPKPWIYATSNLASGVPARFSGSGSGTSYSLTISRVEAEDAATYYCQQWSSNPRTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC | LKLLDSGAELVKPGASVKLSCTASGFNIKDTYMYWVKQRPDQGLEWIGRIDPANGNSKYDPKFQGKATITADTSSNTAYLQVSSLTSEDTAVYYCARWLVRGRRGTMDYWGQGTSVTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPSQSITCNVAHPASSTKVDKKIEPR | DIVMTQSPAILSASPGEKVTMTCRASSSVSYMHWYQQKPGSSPKPWIYATSNLASGVPARFSGSGSGTSYSLTISRVEAEDAATYYCQQWSSNPRTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC | 22.555027 | 24.042683 | 233 | 213 | 220 | 213 | 220 | 213 | 92 | 11-1 fabh | 11-1 fabl | mus musculus | mus musculus | A | protein | peptide antibiotic transporter sbma | escherichia coli | 16 | 10 | 1 | HL | train |
9irc_H_L | 9irc | cyroem structure of hslc15a4+tasl+fab235 | no | membrane protein/immune system | 2024-07-15 | 2025-08-20 | electron microscopy | 2.82 | N.A. | N.A. | 40781080 | 10.1038/s41467-025-62759-x | 0 | auth_asym_id | VH:VL | IGHV3 | IGKV1 | H | L | DVQLVESGGGLVQPGGSRKLSCAASGFTFSRFGMHWVRQAPEKGLEWVAYISSGSSNIYYADTVKGRFTISRDNPKNTLFLQMTSLRSEDTAMYYCARSTTIIRAFFDYWGQGTTLTVSS | QIVLTQSPAIMSASLGERVTMTCTASSGVSSSYLHWYQQKPGSSPRLWIYSTSNLASGVPARFSGSGSGTSYSLTISSMEAEDAATYYCHQYHRSPWAFGGGTKLEIK | DVQLVESGGGLVQPGGSRKLSCAASGFTFSRFGMHWVRQAPEKGLEWVAYISSGSSNIYYADTVKGRFTISRDNPKNTLFLQMTSLRSEDTAMYYCARSTTIIRAFFDYWGQGTTLTVSS | QIVLTQSPAIMSASLGERVTMTCTASSGVSSSYLHWYQQKPGSSPRLWIYSTSNLASGVPARFSGSGSGTSYSLTISSMEAEDAATYYCHQYHRSPWAFGGGTKLEIK | 13.785249 | 12.961705 | 120 | 108 | 120 | 108 | 120 | 108 | 49 | fab235 heavy chain | fab235 light chain | mus musculus | mus musculus | A | protein | solute carrier family 15 member 4 | homo sapiens | 52 | 21 | 0.75 | HL | train |
9co6_D | 9co6 | ba.5 spike/nanosota-9 complex | no | viral protein | 2024-07-16 | 2024-11-20 | electron microscopy | 3.01 | N.A. | N.A. | 39591462 | 10.1371/journal.ppat.1012726 | 0 | auth_asym_id | VHH | IGHV3 | N.A. | D | N.A. | QVQLQESGGGLVQPGGSLRLSCTASGIALHTHATGWFRQAPGKEREGVSCISSGDGTTYYEDSVEGRFTISRDNAKNTVYLQMNSLKLEDTAVYYCAADPGAVCHSGSYYYTDDDFYYRGQGTQVTVSSGGQHHHHHHGAYPYDVPDYAS | N.A. | QVQLQESGGGLVQPGGSLRLSCTASGIALHTHATGWFRQAPGKEREGVSCISSGDGTTYYEDSVEGRFTISRDNAKNTVYLQMNSLKLEDTAVYYCAADPGAVCHSGSYYYTDDDFYYRGQGTQVTVSS | N.A. | 13.943114 | 0 | 150 | 0 | 129 | 0 | 129 | 0 | 0 | nanosota-9 | N.A. | vicugna pacos | N.A. | A | protein | spike glycoprotein | severe acute respiratory syndrome coronavirus 2 | 44 | 16 | 0.76 | H_only | train |
9co6_E | 9co6 | ba.5 spike/nanosota-9 complex | no | viral protein | 2024-07-16 | 2024-11-20 | electron microscopy | 3.01 | N.A. | N.A. | 39591462 | 10.1371/journal.ppat.1012726 | 0 | auth_asym_id | VHH | IGHV3 | N.A. | E | N.A. | QVQLQESGGGLVQPGGSLRLSCTASGIALHTHATGWFRQAPGKEREGVSCISSGDGTTYYEDSVEGRFTISRDNAKNTVYLQMNSLKLEDTAVYYCAADPGAVCHSGSYYYTDDDFYYRGQGTQVTVSSGGQHHHHHHGAYPYDVPDYAS | N.A. | QVQLQESGGGLVQPGGSLRLSCTASGIALHTHATGWFRQAPGKEREGVSCISSGDGTTYYEDSVEGRFTISRDNAKNTVYLQMNSLKLEDTAVYYCAADPGAVCHSGSYYYTDDDFYYRGQGTQVTVSS | N.A. | 13.955256 | 0 | 150 | 0 | 129 | 0 | 129 | 0 | 0 | nanosota-9 | N.A. | vicugna pacos | N.A. | B | protein | spike glycoprotein | severe acute respiratory syndrome coronavirus 2 | 45 | 18 | 0.78 | H_only | train |
9co6_F | 9co6 | ba.5 spike/nanosota-9 complex | no | viral protein | 2024-07-16 | 2024-11-20 | electron microscopy | 3.01 | N.A. | N.A. | 39591462 | 10.1371/journal.ppat.1012726 | 0 | auth_asym_id | VHH | IGHV3 | N.A. | F | N.A. | QVQLQESGGGLVQPGGSLRLSCTASGIALHTHATGWFRQAPGKEREGVSCISSGDGTTYYEDSVEGRFTISRDNAKNTVYLQMNSLKLEDTAVYYCAADPGAVCHSGSYYYTDDDFYYRGQGTQVTVSSGGQHHHHHHGAYPYDVPDYAS | N.A. | QVQLQESGGGLVQPGGSLRLSCTASGIALHTHATGWFRQAPGKEREGVSCISSGDGTTYYEDSVEGRFTISRDNAKNTVYLQMNSLKLEDTAVYYCAADPGAVCHSGSYYYTDDDFYYRGQGTQVTVSS | N.A. | 13.926386 | 0 | 150 | 0 | 129 | 0 | 129 | 0 | 0 | nanosota-9 | N.A. | vicugna pacos | N.A. | C | protein | spike glycoprotein | severe acute respiratory syndrome coronavirus 2 | 46 | 17 | 0.74 | H_only | train |
9co8_D | 9co8 | jn.1 spike/nanosota-9 complex | no | viral protein/immune system | 2024-07-16 | 2024-11-20 | electron microscopy | 2.99 | N.A. | N.A. | 39591462 | 10.1371/journal.ppat.1012726 | 0 | auth_asym_id | VHH | IGHV3 | N.A. | D | N.A. | QVQLQESGGGLVQPGGSLRLSCTASGIALHTHATGWFRQAPGKEREGVSCISSGDGTTYYEDSVEGRFTISRDNAKNTVYLQMNSLKLEDTAVYYCAADPGAVCHSGSYYYTDDDFYYRGQGTQVTVSSGGQHHHHHHGAYPYDVPDYAS | N.A. | QVQLQESGGGLVQPGGSLRLSCTASGIALHTHATGWFRQAPGKEREGVSCISSGDGTTYYEDSVEGRFTISRDNAKNTVYLQMNSLKLEDTAVYYCAADPGAVCHSGSYYYTDDDFYYRGQGTQVTVSS | N.A. | 14.042075 | 0 | 150 | 0 | 129 | 0 | 129 | 0 | 0 | nanosota-9 | N.A. | vicugna pacos | N.A. | A | protein | spike glycoprotein | severe acute respiratory syndrome coronavirus 2 | 42 | 16 | 0.76 | H_only | train |
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