PDB_ID_chain stringlengths 6 10 | PDB_ID stringlengths 4 4 | Title stringlengths 4 230 | Mutation(s) stringclasses 2
values | Classification stringclasses 305
values | Deposit_date stringdate 1976-03-17 00:00:00 2026-01-20 00:00:00 | Release_date stringdate 1976-05-19 00:00:00 2026-02-25 00:00:00 | Method stringclasses 5
values | Resolution stringclasses 459
values | R_free stringclasses 227
values | R_work stringclasses 211
values | PMID stringlengths 4 8 | DOI stringlengths 4 68 | Model_index int64 0 76 | Asym_ID_type stringclasses 2
values | Ab_type stringclasses 30
values | H_subgroup stringclasses 8
values | L_subgroup stringclasses 19
values | H_chain_ID stringclasses 60
values | L_chain_ID stringclasses 58
values | H_fas_seq stringlengths 4 919 | L_fas_seq stringlengths 4 627 | H_filled_pdb_seq stringlengths 4 896 | L_filled_pdb_seq stringlengths 4 523 | H_mean_radius float64 0 79.7 | L_mean_radius float64 0 84.3 | H_fas_seq_len int64 0 919 | L_fas_seq_len int64 0 627 | H_pdb_seq_len int64 0 879 | L_pdb_seq_len int64 0 523 | H_filled_seq_len int64 0 896 | L_filled_seq_len int64 0 523 | HL_inf_res_num int64 0 175 | H_mol_name stringlengths 2 331 | L_mol_name stringlengths 2 151 | H_species stringclasses 68
values | L_species stringclasses 42
values | Ag_chain_ID(s) stringclasses 279
values | Ag_type(s) stringclasses 16
values | Ag_mol_name(s) stringlengths 2 390 | Ag_species stringclasses 743
values | Ab_ag_inf_res_num stringlengths 1 11 | CDR_inf_res_num stringclasses 444
values | CDR_inf_res_ratio stringlengths 1 19 | hl_label stringclasses 3
values | split stringclasses 1
value |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
9lyb_N | 9lyb | cryo-em structure of gpr3-g protein-monomer complex | no | structural protein | 2025-02-19 | 2025-04-09 | electron microscopy | 3.16 | N.A. | N.A. | 40158220 | 10.1016/j.celrep.2025.115478 | 0 | auth_asym_id | VHH | IGHV3 | N.A. | N | N.A. | QVQLQESGGGLVQPGGSLRLSCAASGFTFSNYKMNWVRQAPGKGLEWVSDISQSGASISYTGSVKGRFTISRDNAKNTLYLQMNSLKPEDTAVYYCARCPAPFTRDCFDVTSTTYAYRGQGTQVTVSS | N.A. | QVQLQESGGGLVQPGGSLRLSCAASGFTFSNYKMNWVRQAPGKGLEWVSDISQSGASISYTGSVKGRFTISRDNAKNTLYLQMNSLKPEDTAVYYCARCPAPFTRDCFDVTSTTYAYRGQGTQVTVSS | N.A. | 13.873254 | 0 | 128 | 0 | 128 | 0 | 128 | 0 | 0 | nanobody 35 | N.A. | homo sapiens | N.A. | A;B | protein;protein | isoform gnas-2 of guanine nucleotide-binding protein g(s) subunit alpha isoforms short;guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 | homo sapiens;homo sapiens | 49;32 | 15;11 | 0.56;0.73 | H_only | train |
9lyo_n_l | 9lyo | alpha sars-cov-2 spike protein in complex with regn10987 fab homologue. | no | viral protein | 2025-02-20 | 2025-04-02 | electron microscopy | 3.07 | N.A. | N.A. | 40043614 | 10.1016/j.bbrc.2025.151558 | 0 | auth_asym_id | FabH:FabL | IGHV3 | IGLV2 | n | l | QVQLVESGGGVVQPGRSLRLSCAASGFTFSNYAMYWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRTEDTAVYYCASGSDYGDYLLVYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC | QSALTQPASVSGSPGQSITISCTGTSSDVGGYNYVSWYQQHPGKAPKLMIYDVSKRPSGVSNRFSGSKSGNTASLTISGLQSEDEADYYCNSLTSISTWVFGGGTKLTVLGRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | QVQLVESGGGVVQPGRSLRLSCAASGFTFSNYAMYWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRTEDTAVYYCASGSDYGDYLLVYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC | QSALTQPASVSGSPGQSITISCTGTSSDVGGYNYVSWYQQHPGKAPKLMIYDVSKRPSGVSNRFSGSKSGNTASLTISGLQSEDEADYYCNSLTSISTWVFGGGTKLTVLGRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | 23.100702 | 22.187616 | 223 | 218 | 223 | 218 | 223 | 218 | 114 | regn10987 fab homologue (heavy chain) | regn10987 fab homologue (light chain) | homo sapiens | homo sapiens | A | protein | spike glycoprotein | severe acute respiratory syndrome coronavirus 2 | 38 | 18 | 0.82 | HL | train |
9lyo_j_i | 9lyo | alpha sars-cov-2 spike protein in complex with regn10987 fab homologue. | no | viral protein | 2025-02-20 | 2025-04-02 | electron microscopy | 3.07 | N.A. | N.A. | 40043614 | 10.1016/j.bbrc.2025.151558 | 0 | auth_asym_id | FabH:FabL | IGHV3 | IGLV2 | j | i | QVQLVESGGGVVQPGRSLRLSCAASGFTFSNYAMYWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRTEDTAVYYCASGSDYGDYLLVYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC | QSALTQPASVSGSPGQSITISCTGTSSDVGGYNYVSWYQQHPGKAPKLMIYDVSKRPSGVSNRFSGSKSGNTASLTISGLQSEDEADYYCNSLTSISTWVFGGGTKLTVLGRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | QVQLVESGGGVVQPGRSLRLSCAASGFTFSNYAMYWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRTEDTAVYYCASGSDYGDYLLVYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC | QSALTQPASVSGSPGQSITISCTGTSSDVGGYNYVSWYQQHPGKAPKLMIYDVSKRPSGVSNRFSGSKSGNTASLTISGLQSEDEADYYCNSLTSISTWVFGGGTKLTVLGRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | 23.39747 | 22.467258 | 223 | 218 | 223 | 218 | 223 | 218 | 105 | regn10987 fab homologue (heavy chain) | regn10987 fab homologue (light chain) | homo sapiens | homo sapiens | B | protein | spike glycoprotein | severe acute respiratory syndrome coronavirus 2 | 40 | 20 | 0.8 | HL | train |
9lyo_h_g | 9lyo | alpha sars-cov-2 spike protein in complex with regn10987 fab homologue. | no | viral protein | 2025-02-20 | 2025-04-02 | electron microscopy | 3.07 | N.A. | N.A. | 40043614 | 10.1016/j.bbrc.2025.151558 | 0 | auth_asym_id | FabH:FabL | IGHV3 | IGLV2 | h | g | QVQLVESGGGVVQPGRSLRLSCAASGFTFSNYAMYWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRTEDTAVYYCASGSDYGDYLLVYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC | QSALTQPASVSGSPGQSITISCTGTSSDVGGYNYVSWYQQHPGKAPKLMIYDVSKRPSGVSNRFSGSKSGNTASLTISGLQSEDEADYYCNSLTSISTWVFGGGTKLTVLGRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | QVQLVESGGGVVQPGRSLRLSCAASGFTFSNYAMYWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRTEDTAVYYCASGSDYGDYLLVYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC | QSALTQPASVSGSPGQSITISCTGTSSDVGGYNYVSWYQQHPGKAPKLMIYDVSKRPSGVSNRFSGSKSGNTASLTISGLQSEDEADYYCNSLTSISTWVFGGGTKLTVLGRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | 22.608135 | 22.070751 | 223 | 218 | 223 | 218 | 223 | 218 | 113 | regn10987 fab homologue (heavy chain) | regn10987 fab homologue (light chain) | homo sapiens | homo sapiens | C | protein | spike glycoprotein | severe acute respiratory syndrome coronavirus 2 | 40 | 19 | 0.79 | HL | train |
9lyp_j_i | 9lyp | alpha sars-cov-2 spike protein rbd-down in complex with regn10987 fab homologue (local refinement) | no | viral protein | 2025-02-20 | 2025-04-02 | electron microscopy | 3.6 | N.A. | N.A. | 40043614 | 10.1016/j.bbrc.2025.151558 | 0 | auth_asym_id | FabH:FabL | IGHV3 | IGLV2 | j | i | QVQLVESGGGVVQPGRSLRLSCAASGFTFSNYAMYWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRTEDTAVYYCASGSDYGDYLLVYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC | QSALTQPASVSGSPGQSITISCTGTSSDVGGYNYVSWYQQHPGKAPKLMIYDVSKRPSGVSNRFSGSKSGNTASLTISGLQSEDEADYYCNSLTSISTWVFGGGTKLTVLGRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | QVQLVESGGGVVQPGRSLRLSCAASGFTFSNYAMYWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRTEDTAVYYCASGSDYGDYLLVYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC | QSALTQPASVSGSPGQSITISCTGTSSDVGGYNYVSWYQQHPGKAPKLMIYDVSKRPSGVSNRFSGSKSGNTASLTISGLQSEDEADYYCNSLTSISTWVFGGGTKLTVLGRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | 23.39747 | 22.467258 | 223 | 218 | 223 | 218 | 223 | 218 | 105 | regn10987 fab homologue (heavy chain) | regn10987 fab homologue (light chain) | homo sapiens | homo sapiens | B | protein | spike glycoprotein | severe acute respiratory syndrome coronavirus 2 | 40 | 20 | 0.8 | HL | train |
9ihc_H_L | 9ihc | cryoem structure of a synthetic antibody, cop-2, in complex with the c-terminal domain of clostridium perfringens enterotoxin | no | toxin | 2025-02-21 | 2025-03-12 | electron microscopy | 2.95 | N.A. | N.A. | 40944397 | 10.1002/pro.70281 | 0 | auth_asym_id | FabH:FabL | IGHV3 | IGKV1 | H | L | MKKNIAFLLASMFVFSIATNAYAEISEVQLVESGGGLVQPGGSLRLSCAASGFNFSSSSIHWVRQAPGKGLEWVASISSYSGYTSYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARYWSWYNSSHYIYSALDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHT | MKKNIAFLLASMFVFSIATNAYASDIQMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASSLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQSYEWAPVTFGQGTKVEIKRTVAAPSVFIFPPSDSQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | EVQLVESGGGLVQPGGSLRLSCAASGFNFSSSSIHWVRQAPGKGLEWVASISSYSGYTSYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARYWSWYNSSHYIYSALDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC | SDIQMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASSLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQSYEWAPVTFGQGTKVEIKRTVAAPSVFIFPPSDSQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | 23.700394 | 22.848495 | 260 | 239 | 225 | 216 | 229 | 216 | 104 | cop-2 antibody heavy chain | cop-2 antibody light chain | synthetic construct | synthetic construct | B | protein | heat-labile enterotoxin b chain | clostridium perfringens | 55 | 20 | 0.91 | HL | train |
9nfc_E_D | 9nfc | structure of the cross-hla supertype antibody r302 bound to a class i mhc presenting a divarasib-modified kras-g12c peptide on hla-a*03 | yes | protein binding | 2025-02-21 | 2025-10-08 | electron microscopy | 2.58 | N.A. | N.A. | 41408054 | 10.1038/s41467-025-66132-w | 0 | auth_asym_id | VH:VL | IGHV3 | IGKV3 | E | D | EVQLLESGGGVVQPGRSLRLSCAASGFTFSSYGMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCLYGGNSYGMDVWGQGTMVTVFNQIKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHT | DIVMTQSPATLSLSPGERATLSCRASQSLSSSFLAWYQQKPGQAPRLLIYGASSRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQSESALTFGGGTKVEIKRTVAAPSVFIFPPSDSQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGECGGGGSLPETG | EVQLLESGGGVVQPGRSLRLSCAASGFTFSSYGMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCLYGGNSYGMDVWGQGTMVTVFN | DIVMTQSPATLSLSPGERATLSCRASQSLSSSFLAWYQQKPGQAPRLLIYGASSRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQSESALTFGGGTKVEIK | 13.710731 | 13.003269 | 225 | 224 | 118 | 107 | 118 | 107 | 41 | r302 fab heavy chain | r302 fab light chain | homo sapiens | homo sapiens | A | protein | hla class i histocompatibility antigen, a alpha chain | homo sapiens | 29 | 16 | 0.94 | HL | train |
9nfu_C | 9nfu | cryoem structure of de novo antibody fragment scfv 6 with c. difficile toxin b (tcdb) | no | de novo protein | 2025-02-21 | 2025-11-12 | electron microscopy | 3.6 | N.A. | N.A. | 41193805 | 10.1038/s41586-025-09721-5 | 0 | auth_asym_id | scFv- | N.A. | N.A. | C | N.A. | MGWSCIILFLVATATGVHSEVQLVESGGGLVQPGGSLRLSCAASGFSIKNTYIHWVRQAPGKGLEWVARIWPANGKTRYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCSRQLDPYNLYGNDVWGQGTLVTVSSPNSASHSGSAPQTSSAPGSDIQMTQSPSSLSASVGDRVTITCKTSSSYVNWYQQKPGKAPKLLIYRNSFRAPGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCSTMNNDGNLVFGQGTKVEIKENLYFQGSHHHHHH | N.A. | VQLVESGGGLVQPGGSLRLSCAASGFSIKNTYIHWVRQAPGKGLEWVARIWPANGKTRYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCSRQLDPYNLYGNDVWGQGTLVTVSSPNSASHSGSAPQTSSAPGSDIQMTQSPSSLSASVGDRVTITCKTSSSYVNWYQQKPGKAPKLLIYRNSFRAPGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCSTMNNDGNLVFGQGTKVEI | N.A. | 15.889304 | 0 | 278 | 0 | 175 | 0 | 243 | 0 | 0 | scfv 6 heavy chain, scfv 6 light chain | N.A. | synthetic construct | N.A. | A | protein | toxin b | clostridioides difficile | 54 | 12 | 0.55 | H_only | train |
9m0d_D_Q | 9m0d | cryo-em structure of neurotensin receptor 1 in complex with beta-arrestin 1 | no | membrane protein | 2025-02-24 | 2025-04-09 | electron microscopy | 3.41 | N.A. | N.A. | 40118988 | 10.1038/s41422-025-01095-7 | 0 | auth_asym_id | FabH:FabL | IGHV3 | IGKV1 | D | Q | MVSAIVLYVLLAAAAHSAFAEISEVQLVESGGGLVQPGGSLRLSCAASGFNVYSSSIHWVRQAPGKGLEWVASISSYYGYTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARSRQFWYSGLDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTAAAHHHHHHHH | MVSAIVLYVLLAAAAHSAFASDIQMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASSLYSGVPSRFSGSRSGTDFTLTISSLNPEDFATYYCQQYKYVPVTFGQGTKVEIKRTVAAPSVFIFPPSDSQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | QLVESGGGLVQPGGSLRLSCAASGFNVYSSSIHWVRQAPGKGLEWVASISSYYGYTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARSRQFWYSGLDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK | IQMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASSLYSGVPSRFSGSRSGTDFTLTISSLNPEDFATYYCQQYKYVPVTFGQGTKVEIKRTVAAPSVFIFPPSDSQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNR | 22.880564 | 21.801275 | 260 | 235 | 219 | 210 | 219 | 210 | 100 | fab30 heavy chain | fab30 light chain | homo sapiens | homo sapiens | B | protein | beta-arrestin-1 | homo sapiens | 55 | 24 | 0.8 | HL | train |
9q8l_H_L | 9q8l | crystal structure of 21a08ap1-fab in complex with human pd-1 at 1.85 angstrom resolution | no | immune system | 2025-02-25 | 2025-08-13 | x-ray diffraction | 1.85 | 0.216 | 0.178 | 40664449 | 10.1136/jitc-2025-011905 | 0 | auth_asym_id | FabH:FabL | IGHV3 | IGLV1 | H | L | EVQLLESGGGLVQPGGSLRLSCAASGFTFSINAMTWVRQAPGKGLEWVSTISGSGFSTYYADSLKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAKEVYGDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSC | RSVLTQPPSASGTPGQRVSISCSGASSNIGSQSVFWYQQLPGTAPKLLIYSNNQRPSGVPDRFSGSKSGTSASLAISGLRSEDEADYYCAAWDDSLSIWVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS | EVQLLESGGGLVQPGGSLRLSCAASGFTFSINAMTWVRQAPGKGLEWVSTISGSGFSTYYADSLKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAKEVYGDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSC | SVLTQPPSASGTPGQRVSISCSGASSNIGSQSVFWYQQLPGTAPKLLIYSNNQRPSGVPDRFSGSKSGTSASLAISGLRSEDEADYYCAAWDDSLSIWVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS | 20.621456 | 23.566828 | 218 | 216 | 218 | 215 | 218 | 215 | 96 | heavy chain of huigg1-fab | light chain of huigg1-fab | mus musculus | mus musculus | A | protein | programmed cell death protein 1 | homo sapiens | 44 | 18 | 0.72 | HL | train |
9m1o_S | 9m1o | cryo-em structures of npffr2 complex with neuropeptide ff | yes | membrane protein/immune system | 2025-02-26 | 2025-07-23 | electron microscopy | 2.49 | N.A. | N.A. | 40839429 | 10.1016/j.celrep.2025.116160 | 0 | auth_asym_id | scFv | N.A. | N.A. | S | N.A. | VQLVESGGGLVQPGGSRKLSCSASGFAFSSFGMHWVRQAPEKGLEWVAYISSGSGTIYYADTVKGRFTISRDDPKNTLFLQMTSLRSEDTAMYYCVRSIYYYGSSPFDFWGQGTTLTVSAGGGGSGGGGSGGGGSADIVMTQATSSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLTISRLEAEDVGVYYCMQHLEYPLTFGAGTKLEL | N.A. | VQLVESGGGLVQPGGSRKLSCSASGFAFSSFGMHWVRQAPEKGLEWVAYISSGSGTIYYADTVKGRFTISRDDPKNTLFLQMTSLRSEDTAMYYCVRSIYYYGSSPFDFWGQGTTLTVSAGGGGSGGGGSGGGGSADIVMTQATSSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLTISRLEAEDVGVYYCMQHLEYPLTFGAGTKLEL | N.A. | 17.271362 | 0 | 247 | 0 | 233 | 0 | 247 | 0 | 0 | scfv16 | N.A. | synthetic construct | N.A. | B;A | protein;protein | guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1;guanine nucleotide-binding protein g(i) subunit alpha-1 | rattus norvegicus;homo sapiens | 26;35 | 11;21 | 0.79;0.91 | H_only | train |
9q9s_f | 9q9s | hsv-2 prefusion glycoprotein b bound by nb1_gbhsv | no | viral protein | 2025-02-26 | 2025-09-03 | electron microscopy | 2.7 | N.A. | N.A. | 40903574 | 10.1038/s41586-025-09438-5 | 0 | auth_asym_id | VHH | IGHV3 | N.A. | f | N.A. | QVQLVESGGGSVQPGGSLRLSCAASASGRLSMSGALGWYRQVQGKSRELVATITDRSSTNYADSVKGRFTISIDDAENTMYLQMNSLKPEDTGVYYCNARWRGMNVWGKGTRVTVSSTS | N.A. | QVQLVESGGGSVQPGGSLRLSCAASASGRLSMSGALGWYRQVQGKSRELVATITDRSSTNYADSVKGRFTISIDDAENTMYLQMNSLKPEDTGVYYCNARWRGMNVWGKGTRVTV | N.A. | 13.575861 | 0 | 119 | 0 | 115 | 0 | 115 | 0 | 0 | nb1_gbhsv | N.A. | vicugna pacos | N.A. | A;B | protein;protein | envelope glycoprotein b;envelope glycoprotein b | human herpesvirus 2 strain 333;human herpesvirus 2 strain 333 | 38;24 | 10;9 | 0.45;0.9 | H_only | train |
9q9s_d | 9q9s | hsv-2 prefusion glycoprotein b bound by nb1_gbhsv | no | viral protein | 2025-02-26 | 2025-09-03 | electron microscopy | 2.7 | N.A. | N.A. | 40903574 | 10.1038/s41586-025-09438-5 | 0 | auth_asym_id | VHH | IGHV3 | N.A. | d | N.A. | QVQLVESGGGSVQPGGSLRLSCAASASGRLSMSGALGWYRQVQGKSRELVATITDRSSTNYADSVKGRFTISIDDAENTMYLQMNSLKPEDTGVYYCNARWRGMNVWGKGTRVTVSSTS | N.A. | QVQLVESGGGSVQPGGSLRLSCAASASGRLSMSGALGWYRQVQGKSRELVATITDRSSTNYADSVKGRFTISIDDAENTMYLQMNSLKPEDTGVYYCNARWRGMNVWGKGTRVTV | N.A. | 13.569771 | 0 | 119 | 0 | 115 | 0 | 115 | 0 | 0 | nb1_gbhsv | N.A. | vicugna pacos | N.A. | A;C | protein;protein | envelope glycoprotein b;envelope glycoprotein b | human herpesvirus 2 strain 333;human herpesvirus 2 strain 333 | 26;36 | 9;11 | 0.82;0.52 | H_only | train |
9q9s_e | 9q9s | hsv-2 prefusion glycoprotein b bound by nb1_gbhsv | no | viral protein | 2025-02-26 | 2025-09-03 | electron microscopy | 2.7 | N.A. | N.A. | 40903574 | 10.1038/s41586-025-09438-5 | 0 | auth_asym_id | VHH | IGHV3 | N.A. | e | N.A. | QVQLVESGGGSVQPGGSLRLSCAASASGRLSMSGALGWYRQVQGKSRELVATITDRSSTNYADSVKGRFTISIDDAENTMYLQMNSLKPEDTGVYYCNARWRGMNVWGKGTRVTVSSTS | N.A. | QVQLVESGGGSVQPGGSLRLSCAASASGRLSMSGALGWYRQVQGKSRELVATITDRSSTNYADSVKGRFTISIDDAENTMYLQMNSLKPEDTGVYYCNARWRGMNVWGKGTRVTV | N.A. | 13.563275 | 0 | 119 | 0 | 115 | 0 | 115 | 0 | 0 | nb1_gbhsv | N.A. | vicugna pacos | N.A. | B;C | protein;protein | envelope glycoprotein b;envelope glycoprotein b | human herpesvirus 2 strain 333;human herpesvirus 2 strain 333 | 37;25 | 11;9 | 0.5;0.9 | H_only | train |
9m2f_S | 9m2f | structure of neuropeptide ff receptor 1 complex with npff | yes | membrane protein/immune system | 2025-02-27 | 2025-07-23 | electron microscopy | 2.93 | N.A. | N.A. | 40839429 | 10.1016/j.celrep.2025.116160 | 0 | auth_asym_id | scFv | N.A. | N.A. | S | N.A. | VQLVESGGGLVQPGGSRKLSCSASGFAFSSFGMHWVRQAPEKGLEWVAYISSGSGTIYYADTVKGRFTISRDDPKNTLFLQMTSLRSEDTAMYYCVRSIYYYGSSPFDFWGQGTTLTVSAGGGGSGGGGSGGGGSADIVMTQATSSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLTISRLEAEDVGVYYCMQHLEYPLTFGAGTKLEL | N.A. | VQLVESGGGLVQPGGSRKLSCSASGFAFSSFGMHWVRQAPEKGLEWVAYISSGSGTIYYADTVKGRFTISRDDPKNTLFLQMTSLRSEDTAMYYCVRSIYYYGSSPFDFWGQGTTLTVSAGGGGSGGGGSGGGGSADIVMTQATSSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLTISRLEAEDVGVYYCMQHLEYPLTFGAGTKLEL | N.A. | 17.284468 | 0 | 247 | 0 | 232 | 0 | 247 | 0 | 0 | scfv16 | N.A. | synthetic construct | N.A. | B;A | protein;protein | guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1;guanine nucleotide-binding protein g(i) subunit alpha-1 | rattus norvegicus;homo sapiens | 24;33 | 9;18 | 0.82;0.86 | H_only | train |
9njl_H_L | 9njl | marv gp in complex with marv16 fab | yes | viral protein | 2025-02-27 | 2025-11-26 | electron microscopy | 2.6 | N.A. | N.A. | 41225006 | 10.1038/s41586-025-09868-1 | 0 | auth_asym_id | VH:VL | IGHV3 | IGKV1 | H | L | EVQLVESGGGLVKPGGSLRLSCAASGFTFSSYTMNWVRQAPGKGLEWVSSISSSESYIYYVDSVQGRFTISRDNAKNSLYLQLNSLRAEDTAVYYCVRRDNWNYDTLDIWGQGTMVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSC | DIVMTQSPSSLSASVGDRVIITCRASQSISTYLNWYQQKPGKAPKLLIYAASSLQSGVPSRFSGSESGTDFTLTISGLQPEDFATYYCLQSYDAPLTFGGGTKVDIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | EVQLVESGGGLVKPGGSLRLSCAASGFTFSSYTMNWVRQAPGKGLEWVSSISSSESYIYYVDSVQGRFTISRDNAKNSLYLQLNSLRAEDTAVYYCVRRDNWNYDTLDIWGQGTMVTVS | DIVMTQSPSSLSASVGDRVIITCRASQSISTYLNWYQQKPGKAPKLLIYAASSLQSGVPSRFSGSESGTDFTLTISGLQPEDFATYYCLQSYDAPLTFGGGTKVDIK | 13.66864 | 13.086088 | 223 | 214 | 119 | 107 | 119 | 107 | 47 | marv16 heavy chain | marv16 light chain | mus musculus | mus musculus | B;A | protein;protein | envelope glycoprotein gp2;envelope glycoprotein gp1 | orthomarburgvirus marburgense;orthomarburgvirus marburgense | 43;18 | 21;7 | 0.91;0.7 | HL | train |
9njl_I_N | 9njl | marv gp in complex with marv16 fab | yes | viral protein | 2025-02-27 | 2025-11-26 | electron microscopy | 2.6 | N.A. | N.A. | 41225006 | 10.1038/s41586-025-09868-1 | 0 | auth_asym_id | VH:VL | IGHV3 | IGKV1 | I | N | EVQLVESGGGLVKPGGSLRLSCAASGFTFSSYTMNWVRQAPGKGLEWVSSISSSESYIYYVDSVQGRFTISRDNAKNSLYLQLNSLRAEDTAVYYCVRRDNWNYDTLDIWGQGTMVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSC | DIVMTQSPSSLSASVGDRVIITCRASQSISTYLNWYQQKPGKAPKLLIYAASSLQSGVPSRFSGSESGTDFTLTISGLQPEDFATYYCLQSYDAPLTFGGGTKVDIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | EVQLVESGGGLVKPGGSLRLSCAASGFTFSSYTMNWVRQAPGKGLEWVSSISSSESYIYYVDSVQGRFTISRDNAKNSLYLQLNSLRAEDTAVYYCVRRDNWNYDTLDIWGQGTMVTVS | DIVMTQSPSSLSASVGDRVIITCRASQSISTYLNWYQQKPGKAPKLLIYAASSLQSGVPSRFSGSESGTDFTLTISGLQPEDFATYYCLQSYDAPLTFGGGTKVDIK | 13.668625 | 13.086055 | 223 | 214 | 119 | 107 | 119 | 107 | 47 | marv16 heavy chain | marv16 light chain | mus musculus | mus musculus | D;C | protein;protein | envelope glycoprotein gp2;envelope glycoprotein gp1 | orthomarburgvirus marburgense;orthomarburgvirus marburgense | 43;18 | 21;7 | 0.91;0.7 | HL | train |
9njl_J_P | 9njl | marv gp in complex with marv16 fab | yes | viral protein | 2025-02-27 | 2025-11-26 | electron microscopy | 2.6 | N.A. | N.A. | 41225006 | 10.1038/s41586-025-09868-1 | 0 | auth_asym_id | VH:VL | IGHV3 | IGKV1 | J | P | EVQLVESGGGLVKPGGSLRLSCAASGFTFSSYTMNWVRQAPGKGLEWVSSISSSESYIYYVDSVQGRFTISRDNAKNSLYLQLNSLRAEDTAVYYCVRRDNWNYDTLDIWGQGTMVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSC | DIVMTQSPSSLSASVGDRVIITCRASQSISTYLNWYQQKPGKAPKLLIYAASSLQSGVPSRFSGSESGTDFTLTISGLQPEDFATYYCLQSYDAPLTFGGGTKVDIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | EVQLVESGGGLVKPGGSLRLSCAASGFTFSSYTMNWVRQAPGKGLEWVSSISSSESYIYYVDSVQGRFTISRDNAKNSLYLQLNSLRAEDTAVYYCVRRDNWNYDTLDIWGQGTMVTVS | DIVMTQSPSSLSASVGDRVIITCRASQSISTYLNWYQQKPGKAPKLLIYAASSLQSGVPSRFSGSESGTDFTLTISGLQPEDFATYYCLQSYDAPLTFGGGTKVDIK | 13.668611 | 13.086032 | 223 | 214 | 119 | 107 | 119 | 107 | 47 | marv16 heavy chain | marv16 light chain | mus musculus | mus musculus | F;E | protein;protein | envelope glycoprotein gp2;envelope glycoprotein gp1 | orthomarburgvirus marburgense;orthomarburgvirus marburgense | 43;18 | 21;7 | 0.91;0.7 | HL | train |
9nk9_A | 9nk9 | nano-body peptide complex | no | immune system | 2025-02-28 | 2025-05-28 | x-ray diffraction | 2.1 | 0.214 | 0.172 | 40409557 | 10.1016/j.jbc.2025.110268 | 0 | auth_asym_id | VHH | IGHV3 | N.A. | A | N.A. | EVQLVESGGGLVQAGESLRLSCAASGSTFDFKVMGWYRQPPGKQREGVAAIRLSGNMHYAESVKGRFAISKANAKNTVYLQMNSLRPEDTAVYYCKVNIRGQDYWGQGTQVTVSSVSSGGLPETGGHHHHHH | N.A. | EVQLVESGGGLVQAGESLRLSCAASGSTFDFKVMGWYRQPPGKQREGVAAIRLSGNMHYAESVKGRFAISKANAKNTVYLQMNSLRPEDTAVYYCKVNIRGQDYWGQGTQVTVSSVSS | N.A. | 14.041121 | 0 | 132 | 0 | 118 | 0 | 118 | 0 | 0 | nanobody | N.A. | lama glama | N.A. | N.A. | N.A. | N.A. | N.A. | 0 | 0 | 0 | H_only | train |
9qbj_C | 9qbj | legobody dimer | no | biosynthetic protein | 2025-03-03 | 2025-06-11 | electron microscopy | 3.2 | N.A. | N.A. | N.A. | N.A. | 0 | auth_asym_id | VHH | IGHV3 | N.A. | C | N.A. | EVQLQESGGGLVQPGGSLRLSCTASGVTISALNAMAMGWYRQAPGERRVMVAAVSERGNAMYRESVQGRFTVTRDFTNKMVSLQMDNLKPEDTAVYYCHVLEDRVDSFHDYWGQGTQVTVSSLEGTKHHHHHH | N.A. | VQLQESGGGLVQPGGSLRLSCTASGVTISALNAMAMGWYRQAPGERRVMVAAVSERGNAMYRESVQGRFTVTRDFTNKMVSLQMDNLKPEDTAVYYCHVLEDRVDSFHDYWGQGTQVTVSSLEGTKHHHHH | N.A. | 15.954231 | 0 | 133 | 0 | 131 | 0 | 131 | 0 | 0 | nanobody alfa-h6 | N.A. | vicugna pacos | N.A. | N.A. | N.A. | N.A. | N.A. | 0 | 0 | 0 | H_only | train |
9qbj_D | 9qbj | legobody dimer | no | biosynthetic protein | 2025-03-03 | 2025-06-11 | electron microscopy | 3.2 | N.A. | N.A. | N.A. | N.A. | 0 | auth_asym_id | VHH | IGHV3 | N.A. | D | N.A. | EVQLQESGGGLVQPGGSLRLSCTASGVTISALNAMAMGWYRQAPGERRVMVAAVSERGNAMYRESVQGRFTVTRDFTNKMVSLQMDNLKPEDTAVYYCHVLEDRVDSFHDYWGQGTQVTVSSLEGTKHHHHHH | N.A. | VQLQESGGGLVQPGGSLRLSCTASGVTISALNAMAMGWYRQAPGERRVMVAAVSERGNAMYRESVQGRFTVTRDFTNKMVSLQMDNLKPEDTAVYYCHVLEDRVDSFHDYWGQGTQVTVSSLEGTKHHHHHH | N.A. | 16.138908 | 0 | 133 | 0 | 132 | 0 | 132 | 0 | 0 | nanobody alfa-h6 | N.A. | vicugna pacos | N.A. | N.A. | N.A. | N.A. | N.A. | 0 | 0 | 0 | H_only | train |
9qbj_E_F | 9qbj | legobody dimer | no | biosynthetic protein | 2025-03-03 | 2025-06-11 | electron microscopy | 3.2 | N.A. | N.A. | N.A. | N.A. | 0 | auth_asym_id | FabH:FabL | IGHV3 | IGKV4 | E | F | DVQLVESGGGLVQPGKSLRLSCAASGFTFSNFGMHWVRQAPEMGLEWVAYISSGSTTKYYGDTVKGRFTISRDNPKNTLYLQMNSLRSEDTAMYYCARRPLYDGDYGYPMDYWGQGTSVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCGSGTKHHHHHH | NIMLTQSPSSLAVSAGERVTMSCKSTQSILYNSNQKTYLAWYQQKPGQSPKLLIYWASTRASGVPDRFTGSGSGTDFTLTINSVQPEDLAVYYCHQYLSAWTFGGGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | DVQLVESGGGLVQPGKSLRLSCAASGFTFSNFGMHWVRQAPEMGLEWVAYISSGSTTKYYGDTVKGRFTISRDNPKNTLYLQMNSLRSEDTAMYYCARRPLYDGDYGYPMDYWGQGTSVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEP | NIMLTQSPSSLAVSAGERVTMSCKSTQSILYNSNQKTYLAWYQQKPGQSPKLLIYWASTRASGVPDRFTGSGSGTDFTLTINSVQPEDLAVYYCHQYLSAWTFGGGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFN | 20.13849 | 23.709599 | 237 | 219 | 207 | 204 | 223 | 215 | 86 | fab antibody 8d3_2_h-h6 | fa antibody 8d3_2_l | mus musculus | mus musculus | N.A. | N.A. | N.A. | N.A. | 0 | 0 | 0 | HL | train |
9qbj_G_H | 9qbj | legobody dimer | no | biosynthetic protein | 2025-03-03 | 2025-06-11 | electron microscopy | 3.2 | N.A. | N.A. | N.A. | N.A. | 0 | auth_asym_id | FabH:FabL | IGHV3 | IGKV4 | G | H | DVQLVESGGGLVQPGKSLRLSCAASGFTFSNFGMHWVRQAPEMGLEWVAYISSGSTTKYYGDTVKGRFTISRDNPKNTLYLQMNSLRSEDTAMYYCARRPLYDGDYGYPMDYWGQGTSVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCGSGTKHHHHHH | NIMLTQSPSSLAVSAGERVTMSCKSTQSILYNSNQKTYLAWYQQKPGQSPKLLIYWASTRASGVPDRFTGSGSGTDFTLTINSVQPEDLAVYYCHQYLSAWTFGGGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | DVQLVESGGGLVQPGKSLRLSCAASGFTFSNFGMHWVRQAPEMGLEWVAYISSGSTTKYYGDTVKGRFTISRDNPKNTLYLQMNSLRSEDTAMYYCARRPLYDGDYGYPMDYWGQGTSVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEP | NIMLTQSPSSLAVSAGERVTMSCKSTQSILYNSNQKTYLAWYQQKPGQSPKLLIYWASTRASGVPDRFTGSGSGTDFTLTINSVQPEDLAVYYCHQYLSAWTFGGGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFN | 20.254515 | 23.695797 | 237 | 219 | 207 | 204 | 223 | 215 | 83 | fab antibody 8d3_2_h-h6 | fa antibody 8d3_2_l | mus musculus | mus musculus | N.A. | N.A. | N.A. | N.A. | 0 | 0 | 0 | HL | train |
9m42_N | 9m42 | structure-based discovery of potent agonists of the orphan receptor gpr139 | no | structural protein | 2025-03-03 | 2026-01-21 | electron microscopy | 3.2 | N.A. | N.A. | 41365886 | 10.1038/s41467-025-66845-y | 0 | auth_asym_id | VHH | IGHV3 | N.A. | N | N.A. | MKYLLPTAAAGLLLLAAQPAMAMQVQLQESGGGLVQPGGSLRLSCAASGFTFSNYKMNWVRQAPGKGLEWVSDISQSGASISYTGSVKGRFTISRDNAKNTLYLQMNSLKPEDTAVYYCARCPAPFTRDCFDVTSTTYAYRGQGTQVTVSSHHHHHHEPEA | N.A. | QVQLQESGGGLVQPGGSLRLSCAASGFTFSNYKMNWVRQAPGKGLEWVSDISQSGASISYTGSVKGRFTISRDNAKNTLYLQMNSLKPEDTAVYYCARCPAPFTRDCFDVTSTTYAYRGQGTQVTV | N.A. | 14.012548 | 0 | 161 | 0 | 126 | 0 | 126 | 0 | 0 | nanobody 35 | N.A. | homo sapiens | N.A. | A;B | protein;protein | guanine nucleotide-binding protein g(s) subunit alpha isoforms short;guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 | homo sapiens;homo sapiens | 44;29 | 13;11 | 0.62;0.73 | H_only | train |
9m54_S | 9m54 | cryo-em structure of neuropeptide ff receptor 2 complex with npvf | yes | membrane protein/immune system | 2025-03-05 | 2025-07-23 | electron microscopy | 3.24 | N.A. | N.A. | 40839429 | 10.1016/j.celrep.2025.116160 | 0 | auth_asym_id | scFv | N.A. | N.A. | S | N.A. | VQLVESGGGLVQPGGSRKLSCSASGFAFSSFGMHWVRQAPEKGLEWVAYISSGSGTIYYADTVKGRFTISRDDPKNTLFLQMTSLRSEDTAMYYCVRSIYYYGSSPFDFWGQGTTLTVSAGGGGSGGGGSGGGGSADIVMTQATSSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLTISRLEAEDVGVYYCMQHLEYPLTFGAGTKLEL | N.A. | VQLVESGGGLVQPGGSRKLSCSASGFAFSSFGMHWVRQAPEKGLEWVAYISSGSGTIYYADTVKGRFTISRDDPKNTLFLQMTSLRSEDTAMYYCVRSIYYYGSSPFDFWGQGTTLTVSAGGGGSGGGGSGGGGSADIVMTQATSSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLTISRLEAEDVGVYYCMQHLEYPLTFGAGTKLEL | N.A. | 17.35563 | 0 | 247 | 0 | 232 | 0 | 247 | 0 | 0 | scfv16 | N.A. | mus musculus | N.A. | B;A | protein;protein | guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1;guanine nucleotide-binding protein g(i) subunit alpha-1 | rattus norvegicus;bos taurus | 27;34 | 11;20 | 0.79;0.91 | H_only | train |
9nn9_B | 9nn9 | isg15 complexed with nanobody | yes | immune system | 2025-03-05 | 2025-10-01 | x-ray diffraction | 2.59 | 0.244 | 0.188 | 40774387 | 10.1016/j.jbc.2025.110564 | 0 | auth_asym_id | VHH | IGHV3 | N.A. | B | N.A. | QLQLVETGGGLVQAGGSLRLSCAASGRTFAGLSVKWFRQPPGAEREWVAHITSTGSSTHYADSVKGRFTISRDYDRNMVYLQMSSLKPEDTAVYYCHASTLWPEKHQDYWGQGIQVTVSSGGLPETGGSSYPYDVPDYAGGSSHHHHHH | N.A. | QLQLVETGGGLVQAGGSLRLSCAASGRTFAGLSVKWFRQPPGAEREWVAHITSTGSSTHYADSVKGRFTISRDYDRNMVYLQMSSLKPEDTAVYYCHASTLWPEKHQDYWGQGIQVTVSS | N.A. | 14.022136 | 0 | 149 | 0 | 120 | 0 | 120 | 0 | 0 | nanobody | N.A. | vicugna pacos | N.A. | A | protein | ubiquitin-like protein isg15 | homo sapiens | 45 | 14 | 0.58 | H_only | train |
9nn9_D | 9nn9 | isg15 complexed with nanobody | yes | immune system | 2025-03-05 | 2025-10-01 | x-ray diffraction | 2.59 | 0.244 | 0.188 | 40774387 | 10.1016/j.jbc.2025.110564 | 0 | auth_asym_id | VHH | IGHV3 | N.A. | D | N.A. | QLQLVETGGGLVQAGGSLRLSCAASGRTFAGLSVKWFRQPPGAEREWVAHITSTGSSTHYADSVKGRFTISRDYDRNMVYLQMSSLKPEDTAVYYCHASTLWPEKHQDYWGQGIQVTVSSGGLPETGGSSYPYDVPDYAGGSSHHHHHH | N.A. | QLQLVETGGGLVQAGGSLRLSCAASGRTFAGLSVKWFRQPPGAEREWVAHITSTGSSTHYADSVKGRFTISRDYDRNMVYLQMSSLKPEDTAVYYCHASTLWPEKHQDYWGQGIQVTVSS | N.A. | 13.955219 | 0 | 149 | 0 | 120 | 0 | 120 | 0 | 0 | nanobody | N.A. | vicugna pacos | N.A. | C | protein | ubiquitin-like protein isg15 | homo sapiens | 42 | 13 | 0.57 | H_only | train |
9nn9_F | 9nn9 | isg15 complexed with nanobody | yes | immune system | 2025-03-05 | 2025-10-01 | x-ray diffraction | 2.59 | 0.244 | 0.188 | 40774387 | 10.1016/j.jbc.2025.110564 | 0 | auth_asym_id | VHH | IGHV3 | N.A. | F | N.A. | QLQLVETGGGLVQAGGSLRLSCAASGRTFAGLSVKWFRQPPGAEREWVAHITSTGSSTHYADSVKGRFTISRDYDRNMVYLQMSSLKPEDTAVYYCHASTLWPEKHQDYWGQGIQVTVSSGGLPETGGSSYPYDVPDYAGGSSHHHHHH | N.A. | QLQLVETGGGLVQAGGSLRLSCAASGRTFAGLSVKWFRQPPGAEREWVAHITSTGSSTHYADSVKGRFTISRDYDRNMVYLQMSSLKPEDTAVYYCHASTLWPEKHQDYWGQGIQVTVSS | N.A. | 13.98921 | 0 | 149 | 0 | 120 | 0 | 120 | 0 | 0 | nanobody | N.A. | vicugna pacos | N.A. | E | protein | ubiquitin-like protein isg15 | homo sapiens | 44 | 14 | 0.58 | H_only | train |
9m55_S | 9m55 | structural insight into determinants of endogenous agonist selectivity of aminergic receptors from octopamine b2 receptor structure | no | signaling protein | 2025-03-05 | 2025-12-17 | electron microscopy | 3.39 | N.A. | N.A. | 41393170 | 10.1093/pnasnexus/pgaf376 | 0 | auth_asym_id | scFv | N.A. | N.A. | S | N.A. | MKDHLIHNHHKHEHAHAEHLYFQGSSGSSGDVQLVESGGGLVQPGGSRKLSCSASGFAFSSFGMHWVRQAPEKGLEWVAYISSGSGTIYYADTVKGRFTISRDDPKNTLFLQMTSLRSEDTAMYYCVRSIYYYGSSPFDFWGQGTTLTVSSGGGGSGGGGSGGGGSDIVMTQATSSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLTISRLEAEDVGVYYCMQHLEYPLTFGAGTKLELKSAWSHPQFEKGGGSGGGSGGSAWSHPQFEK | N.A. | VQLVESGGGLVQPGGSRKLSCSASGFAFSSFGMHWVRQAPEKGLEWVAYISSGSGTIYYADTVKGRFTISRDDPKNTLFLQMTSLRSEDTAMYYCVRSIYYYGSSPFDFWGQGTTLTVSSGGGGSGGGGSGGGGSDIVMTQATSSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLTISRLEAEDVGVYYCMQHLEYPLTFGAGTKLEL | N.A. | 17.64388 | 0 | 308 | 0 | 230 | 0 | 246 | 0 | 0 | single chain fv 16 | N.A. | mus musculus | N.A. | B;A | protein;protein | guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1;g-protein subunit alpha | homo sapiens;ixodes scapularis | 25;28 | 12;16 | 0.86;0.89 | H_only | train |
9nnz_A | 9nnz | structure of rod opsin in complex with a megabody | no | membrane protein | 2025-03-06 | 2026-02-18 | electron microscopy | 3.94 | N.A. | N.A. | 41650224 | 10.1073/pnas.2532336123 | 0 | auth_asym_id | VH | IGHV3 | N.A. | A | N.A. | QVQLVESGGGLVQTKTTTSVIDTTNDAQNLLTQAQTIVNTLKDYCPILIAKSSSSNGGTNNANTPSWQTAGGGKNSCATFGAEFSAASDMINNAQKIVQETQQLSANQPKNITQPHNLNLNSPSSLTALAQKMLKNAQSQAEILKLANQVESDFNKLSSGHLKDYIGKCDASAISSANMTMQNQKNNWGNGCAGVEETQSLLKTSAADFNNQTPQINQAQNLANTLIQELGNNTYEQLSRLLTNDNGTNSKTSAQAINQAVNNLNERAKTLAGGTTNSPAYQATLLALRSVLGLWNSMGYAVICGGYTKSPGENNQKDFH... | N.A. | SLRLSCAASGFTFSRYVMNWVRQAPGKGLEWVSGISRDGSYTDYADSVKGRFTISRDNAKDTLYLQMNSLKPEDTAVYYCSKYNSVVTTPPGQGTQVTV | N.A. | 12.790774 | 0 | 514 | 0 | 83 | 0 | 99 | 0 | 0 | megabody 7 | N.A. | synthetic construct | N.A. | N.A. | N.A. | N.A. | N.A. | 0 | 0 | 0 | H_only | train |
9nox_E | 9nox | transmembrane domains of the human tas1r2 sweet receptor subunit in complex with minigs/gust25 | no | membrane protein | 2025-03-10 | 2025-05-14 | electron microscopy | 3 | N.A. | N.A. | 40339580 | 10.1016/j.cell.2025.04.021 | 0 | auth_asym_id | VHH | IGHV3 | N.A. | E | N.A. | MKYLLPTAAAGLLLLAAQPAMAQVQLQESGGGLVQPGGSLRLSCAASGFTFSNYKMNWVRQAPGKGLEWVSDISQSGASISYTGSVKGRFTISRDNAKNTLYLQMNSLKPEDTAVYYCARCPAPFTRDCFDVTSTTYAYRGQGTQVTVSSHHHHHHEPEA | N.A. | QVQLQESGGGLVQPGGSLRLSCAASGFTFSNYKMNWVRQAPGKGLEWVSDISQSGASISYTGSVKGRFTISRDNAKNTLYLQMNSLKPEDTAVYYCARCPAPFTRDCFDVTSTTYAYRGQGTQVTVSS | N.A. | 13.752911 | 0 | 160 | 0 | 128 | 0 | 128 | 0 | 0 | nanobody 35 (nb35) | N.A. | lama glama | N.A. | B;C | protein;protein | minigs/gust25;guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 | homo sapiens;homo sapiens | 44;29 | 12;11 | 0.55;0.73 | H_only | train |
9noz_A | 9noz | structure of photoactivated rhodopsin in complex with a megabody | no | membrane protein | 2025-03-10 | 2026-02-18 | electron microscopy | 3.48 | N.A. | N.A. | 41650224 | 10.1073/pnas.2532336123 | 0 | auth_asym_id | VH | IGHV3 | N.A. | A | N.A. | QVQLVESGGGLVQTKTTTSVIDTTNDAQNLLTQAQTIVNTLKDYCPILIAKSSSSNGGTNNANTPSWQTAGGGKNSCATFGAEFSAASDMINNAQKIVQETQQLSANQPKNITQPHNLNLNSPSSLTALAQKMLKNAQSQAEILKLANQVESDFNKLSSGHLKDYIGKCDASAISSANMTMQNQKNNWGNGCAGVEETQSLLKTSAADFNNQTPQINQAQNLANTLIQELGNNTYEQLSRLLTNDNGTNSKTSAQAINQAVNNLNERAKTLAGGTTNSPAYQATLLALRSVLGLWNSMGYAVICGGYTKSPGENNQKDFH... | N.A. | LRLSCAASGFTFSRYVMNWVRQAPGKGLEWVSGISRDGSYTDYADSVKGRFTISRDNAKDTLYLQMNSLKPEDTAVYYCSKYNSVVTTPPGQGTQVT | N.A. | 11.319568 | 0 | 514 | 0 | 54 | 0 | 97 | 0 | 0 | megabody 7 (mb7) | N.A. | synthetic construct | N.A. | N.A. | N.A. | N.A. | N.A. | 0 | 0 | 0 | H_only | train |
9noz_B | 9noz | structure of photoactivated rhodopsin in complex with a megabody | no | membrane protein | 2025-03-10 | 2026-02-18 | electron microscopy | 3.48 | N.A. | N.A. | 41650224 | 10.1073/pnas.2532336123 | 0 | auth_asym_id | VH | IGHV3 | N.A. | B | N.A. | QVQLVESGGGLVQTKTTTSVIDTTNDAQNLLTQAQTIVNTLKDYCPILIAKSSSSNGGTNNANTPSWQTAGGGKNSCATFGAEFSAASDMINNAQKIVQETQQLSANQPKNITQPHNLNLNSPSSLTALAQKMLKNAQSQAEILKLANQVESDFNKLSSGHLKDYIGKCDASAISSANMTMQNQKNNWGNGCAGVEETQSLLKTSAADFNNQTPQINQAQNLANTLIQELGNNTYEQLSRLLTNDNGTNSKTSAQAINQAVNNLNERAKTLAGGTTNSPAYQATLLALRSVLGLWNSMGYAVICGGYTKSPGENNQKDFH... | N.A. | LRLSCAASGFTFSRYVMNWVRQAPGKGLEWVSGISRDGSYTDYADSVKGRFTISRDNAKDTLYLQMNSLKPEDTAVYYCSKYNSVVTTPPGQGTQVT | N.A. | 11.664086 | 0 | 514 | 0 | 61 | 0 | 97 | 0 | 0 | megabody 7 (mb7) | N.A. | synthetic construct | N.A. | N.A. | N.A. | N.A. | N.A. | 0 | 0 | 0 | H_only | train |
9npg_A_B | 9npg | x-ray crystal structure of recombinant can f 1-c100s in complex with human ige mab 12f3 fab | yes | allergen/immune system | 2025-03-11 | 2025-08-27 | x-ray diffraction | 3.12 | 0.245 | 0.203 | 40828364 | 10.1002/pro.70269 | 0 | auth_asym_id | FabH:FabL | IGHV1 | IGKV3 | A | B | QVQLVQSGAEVQKPGSSVKVSCKASGGTFSRYPLIWVRQTPGQGLEWMGGIFPVIGRTNYAEKFQGRVTITADESTSTAYMELNSLTSEDTAVYYCARLDTYEILGYGTDVWGQGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCHHHHHH | EIVLTQSPATLSLSPGERATLSCRASESVSSSVAWYQQKFGQAPRLLIYDASNRATGIPARFSGSGSGTDFTLTISSLEPEDFAVYYCQLRSNWPPLTFGGGTKVQIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | QVQLVQSGAEVQKPGSSVKVSCKASGGTFSRYPLIWVRQTPGQGLEWMGGIFPVIGRTNYAEKFQGRVTITADESTSTAYMELNSLTSEDTAVYYCARLDTYEILGYGTDVWGQGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKS | EIVLTQSPATLSLSPGERATLSCRASESVSSSVAWYQQKFGQAPRLLIYDASNRATGIPARFSGSGSGTDFTLTISSLEPEDFAVYYCQLRSNWPPLTFGGGTKVQIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRG | 23.190174 | 22.38577 | 231 | 215 | 220 | 213 | 224 | 213 | 102 | ige 12f3 fab heavy chain | ige 12f3 fab light chain | homo sapiens | homo sapiens | C | protein | major allergen can f 1 | canis lupus familiaris | 52 | 19 | 0.83 | HL | train |
9npg_D_E | 9npg | x-ray crystal structure of recombinant can f 1-c100s in complex with human ige mab 12f3 fab | yes | allergen/immune system | 2025-03-11 | 2025-08-27 | x-ray diffraction | 3.12 | 0.245 | 0.203 | 40828364 | 10.1002/pro.70269 | 0 | auth_asym_id | FabH:FabL | IGHV1 | IGKV3 | D | E | QVQLVQSGAEVQKPGSSVKVSCKASGGTFSRYPLIWVRQTPGQGLEWMGGIFPVIGRTNYAEKFQGRVTITADESTSTAYMELNSLTSEDTAVYYCARLDTYEILGYGTDVWGQGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCHHHHHH | EIVLTQSPATLSLSPGERATLSCRASESVSSSVAWYQQKFGQAPRLLIYDASNRATGIPARFSGSGSGTDFTLTISSLEPEDFAVYYCQLRSNWPPLTFGGGTKVQIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | QVQLVQSGAEVQKPGSSVKVSCKASGGTFSRYPLIWVRQTPGQGLEWMGGIFPVIGRTNYAEKFQGRVTITADESTSTAYMELNSLTSEDTAVYYCARLDTYEILGYGTDVWGQGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCHHHHH | EIVLTQSPATLSLSPGERATLSCRASESVSSSVAWYQQKFGQAPRLLIYDASNRATGIPARFSGSGSGTDFTLTISSLEPEDFAVYYCQLRSNWPPLTFGGGTKVQIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNR | 24.255774 | 22.80629 | 231 | 215 | 226 | 212 | 230 | 212 | 109 | ige 12f3 fab heavy chain | ige 12f3 fab light chain | homo sapiens | homo sapiens | F | protein | major allergen can f 1 | canis lupus familiaris | 51 | 17 | 0.77 | HL | train |
9npg_G_H | 9npg | x-ray crystal structure of recombinant can f 1-c100s in complex with human ige mab 12f3 fab | yes | allergen/immune system | 2025-03-11 | 2025-08-27 | x-ray diffraction | 3.12 | 0.245 | 0.203 | 40828364 | 10.1002/pro.70269 | 0 | auth_asym_id | FabH:FabL | IGHV1 | IGKV3 | G | H | QVQLVQSGAEVQKPGSSVKVSCKASGGTFSRYPLIWVRQTPGQGLEWMGGIFPVIGRTNYAEKFQGRVTITADESTSTAYMELNSLTSEDTAVYYCARLDTYEILGYGTDVWGQGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCHHHHHH | EIVLTQSPATLSLSPGERATLSCRASESVSSSVAWYQQKFGQAPRLLIYDASNRATGIPARFSGSGSGTDFTLTISSLEPEDFAVYYCQLRSNWPPLTFGGGTKVQIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | QVQLVQSGAEVQKPGSSVKVSCKASGGTFSRYPLIWVRQTPGQGLEWMGGIFPVIGRTNYAEKFQGRVTITADESTSTAYMELNSLTSEDTAVYYCARLDTYEILGYGTDVWGQGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKS | EIVLTQSPATLSLSPGERATLSCRASESVSSSVAWYQQKFGQAPRLLIYDASNRATGIPARFSGSGSGTDFTLTISSLEPEDFAVYYCQLRSNWPPLTFGGGTKVQIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE | 23.34289 | 22.500008 | 231 | 215 | 220 | 214 | 224 | 214 | 105 | ige 12f3 fab heavy chain | ige 12f3 fab light chain | homo sapiens | homo sapiens | I | protein | major allergen can f 1 | canis lupus familiaris | 57 | 21 | 0.78 | HL | train |
9npg_K_J | 9npg | x-ray crystal structure of recombinant can f 1-c100s in complex with human ige mab 12f3 fab | yes | allergen/immune system | 2025-03-11 | 2025-08-27 | x-ray diffraction | 3.12 | 0.245 | 0.203 | 40828364 | 10.1002/pro.70269 | 0 | auth_asym_id | FabH:FabL | IGHV1 | IGKV3 | K | J | QVQLVQSGAEVQKPGSSVKVSCKASGGTFSRYPLIWVRQTPGQGLEWMGGIFPVIGRTNYAEKFQGRVTITADESTSTAYMELNSLTSEDTAVYYCARLDTYEILGYGTDVWGQGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCHHHHHH | EIVLTQSPATLSLSPGERATLSCRASESVSSSVAWYQQKFGQAPRLLIYDASNRATGIPARFSGSGSGTDFTLTISSLEPEDFAVYYCQLRSNWPPLTFGGGTKVQIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | QVQLVQSGAEVQKPGSSVKVSCKASGGTFSRYPLIWVRQTPGQGLEWMGGIFPVIGRTNYAEKFQGRVTITADESTSTAYMELNSLTSEDTAVYYCARLDTYEILGYGTDVWGQGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC | EIVLTQSPATLSLSPGERATLSCRASESVSSSVAWYQQKFGQAPRLLIYDASNRATGIPARFSGSGSGTDFTLTISSLEPEDFAVYYCQLRSNWPPLTFGGGTKVQIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRG | 23.29512 | 22.906841 | 231 | 215 | 221 | 213 | 225 | 213 | 100 | ige 12f3 fab heavy chain | ige 12f3 fab light chain | homo sapiens | homo sapiens | L | protein | major allergen can f 1 | canis lupus familiaris | 54 | 19 | 0.76 | HL | train |
9npi_C_B | 9npi | x-ray crystal structure of recombinant can f 1 in complex with human ige 12f3 fab | no | allergen/immune system | 2025-03-11 | 2025-08-27 | x-ray diffraction | 1.85 | 0.226 | 0.179 | 40828364 | 10.1002/pro.70269 | 0 | auth_asym_id | FabH:FabL | IGHV1 | IGKV3 | C | B | QVQLVQSGAEVQKPGSSVKVSCKASGGTFSRYPLIWVRQTPGQGLEWMGGIFPVIGRTNYAEKFQGRVTITADESTSTAYMELNSLTSEDTAVYYCARLDTYEILGYGTDVWGQGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC | EIVLTQSPATLSLSPGERATLSCRASESVSSSVAWYQQKFGQAPRLLIYDASNRATGIPARFSGSGSGTDFTLTISSLEPEDFAVYYCQLRSNWPPLTFGGGTKVQIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | QVQLVQSGAEVQKPGSSVKVSCKASGGTFSRYPLIWVRQTPGQGLEWMGGIFPVIGRTNYAEKFQGRVTITADESTSTAYMELNSLTSEDTAVYYCARLDTYEILGYGTDVWGQGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKS | EIVLTQSPATLSLSPGERATLSCRASESVSSSVAWYQQKFGQAPRLLIYDASNRATGIPARFSGSGSGTDFTLTISSLEPEDFAVYYCQLRSNWPPLTFGGGTKVQIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE | 23.119896 | 22.61906 | 225 | 215 | 222 | 214 | 224 | 214 | 102 | human ige 12f3 heavy chain | human ige 12f3 light chain | homo sapiens | homo sapiens | A | protein | major allergen can f 1 | canis lupus familiaris | 54 | 19 | 0.79 | HL | train |
9nq3_A_B | 9nq3 | crystal structure of sars-cov-2 s2 directed fab 1871 | no | immune system | 2025-03-11 | 2025-11-12 | x-ray diffraction | 2.5 | 0.251 | 0.216 | N.A. | N.A. | 0 | auth_asym_id | FabH:FabL | IGHV3 | IGKV3 | A | B | EVQLVESGGGLVKPGGSLRLSCVASGFSFSIYSMNWVRQAPGKGLEWVSYISSSSSYKYYADSVKGRFSVSRDNAKNSLYLQLNGLRAEDTAVYYCARDGYCPKGVCTYYGMDVWGQGTTVTVSAASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKS | EIVMTQSPATLSVSPGERVTLSCRASQSVRSRLAWFQQKPGQAPRLLIYDASIRATGIPARFSGSGSGTEFTLIISSLQSEDFAVYYCQQYDNWPPAYTFGQGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE | EVQLVESGGGLVKPGGSLRLSCVASGFSFSIYSMNWVRQAPGKGLEWVSYISSSSSYKYYADSVKGRFSVSRDNAKNSLYLQLNGLRAEDTAVYYCARDGYCPKGVCTYYGMDVWGQGTTVTVSAASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK | EIVMTQSPATLSVSPGERVTLSCRASQSVRSRLAWFQQKPGQAPRLLIYDASIRATGIPARFSGSGSGTEFTLIISSLQSEDFAVYYCQQYDNWPPAYTFGQGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE | 23.37797 | 22.892069 | 227 | 215 | 226 | 215 | 226 | 215 | 103 | 1871 fab heavy chain | 1871 fab light chain | homo sapiens | homo sapiens | N.A. | N.A. | N.A. | N.A. | 0 | 0 | 0 | HL | train |
9nq3_H_L | 9nq3 | crystal structure of sars-cov-2 s2 directed fab 1871 | no | immune system | 2025-03-11 | 2025-11-12 | x-ray diffraction | 2.5 | 0.251 | 0.216 | N.A. | N.A. | 0 | auth_asym_id | FabH:FabL | IGHV3 | IGKV3 | H | L | EVQLVESGGGLVKPGGSLRLSCVASGFSFSIYSMNWVRQAPGKGLEWVSYISSSSSYKYYADSVKGRFSVSRDNAKNSLYLQLNGLRAEDTAVYYCARDGYCPKGVCTYYGMDVWGQGTTVTVSAASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKS | EIVMTQSPATLSVSPGERVTLSCRASQSVRSRLAWFQQKPGQAPRLLIYDASIRATGIPARFSGSGSGTEFTLIISSLQSEDFAVYYCQQYDNWPPAYTFGQGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE | EVQLVESGGGLVKPGGSLRLSCVASGFSFSIYSMNWVRQAPGKGLEWVSYISSSSSYKYYADSVKGRFSVSRDNAKNSLYLQLNGLRAEDTAVYYCARDGYCPKGVCTYYGMDVWGQGTTVTVSAASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK | EIVMTQSPATLSVSPGERVTLSCRASQSVRSRLAWFQQKPGQAPRLLIYDASIRATGIPARFSGSGSGTEFTLIISSLQSEDFAVYYCQQYDNWPPAYTFGQGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE | 23.29231 | 22.839191 | 227 | 215 | 226 | 215 | 226 | 215 | 108 | 1871 fab heavy chain | 1871 fab light chain | homo sapiens | homo sapiens | N.A. | N.A. | N.A. | N.A. | 0 | 0 | 0 | HL | train |
9nqz_H_L | 9nqz | cryo-em structure of broad betacoronavirus binding antibody 1871 in complex with oc43 s2 subunit | no | viral protein/immune system | 2025-03-13 | 2025-11-12 | electron microscopy | 2.6 | N.A. | N.A. | 41222229 | 10.1128/jvi.01523-25 | 0 | auth_asym_id | VH:VL | IGHV3 | IGKV3 | H | L | EVQLVESGGGLVKPGGSLRLSCVASGFSFSIYSMNWVRQAPGKGLEWVSYISSSSSYKYYADSVKGRFSVSRDNAKNSLYLQLNGLRAEDTAVYYCARDGYCPKGVCTYYGMDVWGQGTTVTVSA | EIVMTQSPATLSVSPGERVTLSCRASQSVRSRLAWFQQKPGQAPRLLIYDASIRATGIPARFSGSGSGTEFTLIISSLQSEDFAVYYCQQYDNWPPAYTFGQGTKLEIK | EVQLVESGGGLVKPGGSLRLSCVASGFSFSIYSMNWVRQAPGKGLEWVSYISSSSSYKYYADSVKGRFSVSRDNAKNSLYLQLNGLRAEDTAVYYCARDGYCPKGVCTYYGMDVWGQGTTVTVSA | EIVMTQSPATLSVSPGERVTLSCRASQSVRSRLAWFQQKPGQAPRLLIYDASIRATGIPARFSGSGSGTEFTLIISSLQSEDFAVYYCQQYDNWPPAYTFGQGTKLEIK | 13.893628 | 13.366718 | 125 | 109 | 125 | 109 | 125 | 109 | 40 | 1871 fab heavy chain | 1871 fab light chain | homo sapiens | homo sapiens | A | protein | spike glycoprotein | human coronavirus oc43 | 56 | 24 | 0.83 | HL | train |
9nqz_G_F | 9nqz | cryo-em structure of broad betacoronavirus binding antibody 1871 in complex with oc43 s2 subunit | no | viral protein/immune system | 2025-03-13 | 2025-11-12 | electron microscopy | 2.6 | N.A. | N.A. | 41222229 | 10.1128/jvi.01523-25 | 0 | auth_asym_id | VH:VL | IGHV3 | IGKV3 | G | F | EVQLVESGGGLVKPGGSLRLSCVASGFSFSIYSMNWVRQAPGKGLEWVSYISSSSSYKYYADSVKGRFSVSRDNAKNSLYLQLNGLRAEDTAVYYCARDGYCPKGVCTYYGMDVWGQGTTVTVSA | EIVMTQSPATLSVSPGERVTLSCRASQSVRSRLAWFQQKPGQAPRLLIYDASIRATGIPARFSGSGSGTEFTLIISSLQSEDFAVYYCQQYDNWPPAYTFGQGTKLEIK | EVQLVESGGGLVKPGGSLRLSCVASGFSFSIYSMNWVRQAPGKGLEWVSYISSSSSYKYYADSVKGRFSVSRDNAKNSLYLQLNGLRAEDTAVYYCARDGYCPKGVCTYYGMDVWGQGTTVTVSA | EIVMTQSPATLSVSPGERVTLSCRASQSVRSRLAWFQQKPGQAPRLLIYDASIRATGIPARFSGSGSGTEFTLIISSLQSEDFAVYYCQQYDNWPPAYTFGQGTKLEIK | 13.903021 | 13.368408 | 125 | 109 | 125 | 109 | 125 | 109 | 41 | 1871 fab heavy chain | 1871 fab light chain | homo sapiens | homo sapiens | B | protein | spike glycoprotein | human coronavirus oc43 | 55 | 24 | 0.86 | HL | train |
9nqz_E_D | 9nqz | cryo-em structure of broad betacoronavirus binding antibody 1871 in complex with oc43 s2 subunit | no | viral protein/immune system | 2025-03-13 | 2025-11-12 | electron microscopy | 2.6 | N.A. | N.A. | 41222229 | 10.1128/jvi.01523-25 | 0 | auth_asym_id | VH:VL | IGHV3 | IGKV3 | E | D | EVQLVESGGGLVKPGGSLRLSCVASGFSFSIYSMNWVRQAPGKGLEWVSYISSSSSYKYYADSVKGRFSVSRDNAKNSLYLQLNGLRAEDTAVYYCARDGYCPKGVCTYYGMDVWGQGTTVTVSA | EIVMTQSPATLSVSPGERVTLSCRASQSVRSRLAWFQQKPGQAPRLLIYDASIRATGIPARFSGSGSGTEFTLIISSLQSEDFAVYYCQQYDNWPPAYTFGQGTKLEIK | EVQLVESGGGLVKPGGSLRLSCVASGFSFSIYSMNWVRQAPGKGLEWVSYISSSSSYKYYADSVKGRFSVSRDNAKNSLYLQLNGLRAEDTAVYYCARDGYCPKGVCTYYGMDVWGQGTTVTVSA | EIVMTQSPATLSVSPGERVTLSCRASQSVRSRLAWFQQKPGQAPRLLIYDASIRATGIPARFSGSGSGTEFTLIISSLQSEDFAVYYCQQYDNWPPAYTFGQGTKLEIK | 13.919786 | 13.385572 | 125 | 109 | 125 | 109 | 125 | 109 | 41 | 1871 fab heavy chain | 1871 fab light chain | homo sapiens | homo sapiens | C | protein | spike glycoprotein | human coronavirus oc43 | 55 | 23 | 0.85 | HL | train |
9nr6_F | 9nr6 | the structure of noelin 1 with cerebellar glua1/a4-atd | no | membrane protein | 2025-03-14 | 2025-07-02 | electron microscopy | 3.26 | N.A. | N.A. | 40550474 | 10.1038/s41586-025-09289-0 | 0 | auth_asym_id | scFv | N.A. | N.A. | F | N.A. | EVKLLESGGGLVQPGGSLKLSCAASGFDFSEYWMSWVRQAPGKGLEWIGEINPDSSSIDYTPSLKDKIIISRDNAKKTLYLQLSKVRSEDTALYYCARPRGNYVVMDYWGQGTSVTVSSSGGGGSGGGGSGGGGNIVLTQSPASLAVSLGQRATISCRASESVDSYGSSFVHWYQQKPGQPPKLLIFLASKLESGVPARFSGSGSRTDFTLTIDPVEADDAATYYCQQTNEDPYTFGGGTKLEIKRASNWSHPQFEK | N.A. | EVKLLESGGGLVQPGGSLKLSCAASGFDFSEYWMSWVRQAPGKGLEWIGEINPDSSSIDYTPSLKDKIIISRDNAKKTLYLQLSKVRSEDTALYYCARPRGNYVVMDYWGQGTSVTVSSSGGGGSGGGGSGGGGNIVLTQSPASLAVSLGQRATISCRASESVDSYGSSFVHWYQQKPGQPPKLLIFLASKLESGVPARFSGSGSRTDFTLTIDPVEADDAATYYCQQTNEDPYTFGGGTKLEIKR | N.A. | 17.453533 | 0 | 257 | 0 | 229 | 0 | 246 | 0 | 0 | 11b8 scfv | N.A. | mus musculus | N.A. | A | protein | glutamate receptor 1 | rattus norvegicus | 35 | 19 | 0.95 | H_only | train |
9nr6_E | 9nr6 | the structure of noelin 1 with cerebellar glua1/a4-atd | no | membrane protein | 2025-03-14 | 2025-07-02 | electron microscopy | 3.26 | N.A. | N.A. | 40550474 | 10.1038/s41586-025-09289-0 | 0 | auth_asym_id | scFv | N.A. | N.A. | E | N.A. | EVKLLESGGGLVQPGGSLKLSCAASGFDFSEYWMSWVRQAPGKGLEWIGEINPDSSSIDYTPSLKDKIIISRDNAKKTLYLQLSKVRSEDTALYYCARPRGNYVVMDYWGQGTSVTVSSSGGGGSGGGGSGGGGNIVLTQSPASLAVSLGQRATISCRASESVDSYGSSFVHWYQQKPGQPPKLLIFLASKLESGVPARFSGSGSRTDFTLTIDPVEADDAATYYCQQTNEDPYTFGGGTKLEIKRASNWSHPQFEK | N.A. | EVKLLESGGGLVQPGGSLKLSCAASGFDFSEYWMSWVRQAPGKGLEWIGEINPDSSSIDYTPSLKDKIIISRDNAKKTLYLQLSKVRSEDTALYYCARPRGNYVVMDYWGQGTSVTVSSSGGGGSGGGGSGGGGNIVLTQSPASLAVSLGQRATISCRASESVDSYGSSFVHWYQQKPGQPPKLLIFLASKLESGVPARFSGSGSRTDFTLTIDPVEADDAATYYCQQTNEDPYTFGGGTKLEIKR | N.A. | 17.460869 | 0 | 257 | 0 | 229 | 0 | 246 | 0 | 0 | 11b8 scfv | N.A. | mus musculus | N.A. | C | protein | glutamate receptor 1 | rattus norvegicus | 32 | 18 | 0.95 | H_only | train |
9nr8_F | 9nr8 | the structure of cerebellar glua1/a4 atd | no | membrane protein | 2025-03-14 | 2025-07-02 | electron microscopy | 3.53 | N.A. | N.A. | 40550474 | 10.1038/s41586-025-09289-0 | 0 | auth_asym_id | scFv | N.A. | N.A. | F | N.A. | EVKLLESGGGLVQPGGSLKLSCAASGFDFSEYWMSWVRQAPGKGLEWIGEINPDSSSIDYTPSLKDKIIISRDNAKKTLYLQLSKVRSEDTALYYCARPRGNYVVMDYWGQGTSVTVSSSGGGGSGGGGSGGGGNIVLTQSPASLAVSLGQRATISCRASESVDSYGSSFVHWYQQKPGQPPKLLIFLASKLESGVPARFSGSGSRTDFTLTIDPVEADDAATYYCQQTNEDPYTFGGGTKLEIKRASNWSHPQFEK | N.A. | EVKLLESGGGLVQPGGSLKLSCAASGFDFSEYWMSWVRQAPGKGLEWIGEINPDSSSIDYTPSLKDKIIISRDNAKKTLYLQLSKVRSEDTALYYCARPRGNYVVMDYWGQGTSVTVSSSGGGGSGGGGSGGGGNIVLTQSPASLAVSLGQRATISCRASESVDSYGSSFVHWYQQKPGQPPKLLIFLASKLESGVPARFSGSGSRTDFTLTIDPVEADDAATYYCQQTNEDPYTFGGGTKLEIKR | N.A. | 17.477755 | 0 | 257 | 0 | 229 | 0 | 246 | 0 | 0 | 11b8 scfv | N.A. | mus musculus | N.A. | A | protein | glutamate receptor 1 | rattus norvegicus | 30 | 17 | 0.94 | H_only | train |
9nr8_E | 9nr8 | the structure of cerebellar glua1/a4 atd | no | membrane protein | 2025-03-14 | 2025-07-02 | electron microscopy | 3.53 | N.A. | N.A. | 40550474 | 10.1038/s41586-025-09289-0 | 0 | auth_asym_id | scFv | N.A. | N.A. | E | N.A. | EVKLLESGGGLVQPGGSLKLSCAASGFDFSEYWMSWVRQAPGKGLEWIGEINPDSSSIDYTPSLKDKIIISRDNAKKTLYLQLSKVRSEDTALYYCARPRGNYVVMDYWGQGTSVTVSSSGGGGSGGGGSGGGGNIVLTQSPASLAVSLGQRATISCRASESVDSYGSSFVHWYQQKPGQPPKLLIFLASKLESGVPARFSGSGSRTDFTLTIDPVEADDAATYYCQQTNEDPYTFGGGTKLEIKRASNWSHPQFEK | N.A. | EVKLLESGGGLVQPGGSLKLSCAASGFDFSEYWMSWVRQAPGKGLEWIGEINPDSSSIDYTPSLKDKIIISRDNAKKTLYLQLSKVRSEDTALYYCARPRGNYVVMDYWGQGTSVTVSSSGGGGSGGGGSGGGGNIVLTQSPASLAVSLGQRATISCRASESVDSYGSSFVHWYQQKPGQPPKLLIFLASKLESGVPARFSGSGSRTDFTLTIDPVEADDAATYYCQQTNEDPYTFGGGTKLEIKR | N.A. | 17.448242 | 0 | 257 | 0 | 229 | 0 | 246 | 0 | 0 | 11b8 scfv | N.A. | mus musculus | N.A. | C | protein | glutamate receptor 1 | rattus norvegicus | 30 | 18 | 0.9 | H_only | train |
9nrc_C_B | 9nrc | tmprss6 in complex with regn7999 fab and regn8023 fab | yes | membrane protein | 2025-03-14 | 2025-07-09 | electron microscopy | 3.29 | N.A. | N.A. | 40548380 | 10.1172/jci.insight.191813 | 0 | auth_asym_id | FabH:FabL | IGHV3 | IGKV2 | C | B | EVQLVESGGGLVKPGGSLRISCAASGFIFVDYAMHWVRQAPGKGLEWVSGISWNSGSIGYADSVKGRFTISRDNAKKSLYLQMSGLRPEDTALYYCVKSGFYYVRSYFDNWGQGTLVTVSSASTKGPSVFPLAPCSRSTSESTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTKTYTCNVDHKPSNTKVDKRVESKYGPPCPPCPAPEFLG | DIVMTQSPLSLPVTPGEPASISCRSSQSLLDSDDGNTYLDWYLRKPGQSPQLLIYTLSYRASGVPDRFSGSGSGTDFTLKISRVEADDVGVYYCMQRIEFPLTFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | EVQLVESGGGLVKPGGSLRISCAASGFIFVDYAMHWVRQAPGKGLEWVSGISWNSGSIGYADSVKGRFTISRDNAKKSLYLQMSGLRPEDTALYYCVKSGFYYVRSYFDNWGQGTLVTVSSASTKGPSVFPLAPCSRSTSESTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTKTYTCNVDHKPSNTKVDKRVES | DIVMTQSPLSLPVTPGEPASISCRSSQSLLDSDDGNTYLDWYLRKPGQSPQLLIYTLSYRASGVPDRFSGSGSGTDFTLKISRVEADDVGVYYCMQRIEFPLTFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | 21.007227 | 24.225582 | 237 | 220 | 215 | 220 | 221 | 220 | 90 | regn8023 fab heavy chain | regn8023 fab light chain | homo sapiens | homo sapiens | A | protein | transmembrane protease serine 6 | homo sapiens | 34 | 15 | 0.83 | HL | train |
9nrc_H_L | 9nrc | tmprss6 in complex with regn7999 fab and regn8023 fab | yes | membrane protein | 2025-03-14 | 2025-07-09 | electron microscopy | 3.29 | N.A. | N.A. | 40548380 | 10.1172/jci.insight.191813 | 0 | auth_asym_id | FabH:FabL | IGHV3 | IGKV1 | H | L | EVQLVESGGGLVQPGGSLRLSCAASGFTFSSYAMTWVRQAPGKGLEWVSAISGSDTSTYYADSVKGRFTISRDNSKNTLFLQMNSLRAEDTAVYYCAKHQDYDFSYYYSAMDVWGQGTTVTVSSASTKGPSVFPLAPCSRSTSESTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTKTYTCNVDHKPSNTKVDKRVESKYGPPCPPCPAPEFLG | DIQMTQSPSSLSASVGDRVIITCRASQDFNSWLAWYQQKPGKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQTDSFPFTFGPGTKVDIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | EVQLVESGGGLVQPGGSLRLSCAASGFTFSSYAMTWVRQAPGKGLEWVSAISGSDTSTYYADSVKGRFTISRDNSKNTLFLQMNSLRAEDTAVYYCAKHQDYDFSYYYSAMDVWGQGTTVTVSSASTKGPSVFPLAPCSRSTSESTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTKTYTCNVDHKPSNTKVDKRVES | DIQMTQSPSSLSASVGDRVIITCRASQDFNSWLAWYQQKPGKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQTDSFPFTFGPGTKVDIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | 22.99998 | 22.638071 | 240 | 214 | 218 | 214 | 224 | 214 | 87 | regn7999 fab heavy chain | regn7999 fab light chain | homo sapiens | homo sapiens | A | protein | transmembrane protease serine 6 | homo sapiens | 58 | 19 | 0.73 | HL | train |
9nrz_Y | 9nrz | venezuelan equine encephalitis virus in complex with the single domain antibody v3a8f | no | viral protein/immune system | 2025-03-14 | 2025-12-03 | electron microscopy | 4.3 | N.A. | N.A. | 41400357 | 10.1128/jvi.01875-25 | 0 | auth_asym_id | VHH | IGHV3 | N.A. | Y | N.A. | DVQLQASGGGSVQAGGSLRLSCAASGHSFANYHVAWIRQTPGKEREFVGSASRRDDSTYYADFALGRFIISRDNDINTAYLQMNSLKPEDSAVYYCVAAVMAQTTQGWTTDYDLRGQGTQVTVSS | N.A. | DVQLQASGGGSVQAGGSLRLSCAASGHSFANYHVAWIRQTPGKEREFVGSASRRDDSTYYADFALGRFIISRDNDINTAYLQMNSLKPEDSAVYYCVAAVMAQTTQGWTTDYDLRGQGTQVTVSS | N.A. | 13.825297 | 0 | 125 | 0 | 125 | 0 | 125 | 0 | 0 | single domain antibody (nanobody) v3a8f | N.A. | lama glama | N.A. | J;G | protein;protein | e2 envelope glycoprotein;e1 envelope glycoprotein | venezuelan equine encephalitis virus;venezuelan equine encephalitis virus | 20;10 | 7;5 | 0.64;1.0 | H_only | train |
9nrz_Z | 9nrz | venezuelan equine encephalitis virus in complex with the single domain antibody v3a8f | no | viral protein/immune system | 2025-03-14 | 2025-12-03 | electron microscopy | 4.3 | N.A. | N.A. | 41400357 | 10.1128/jvi.01875-25 | 0 | auth_asym_id | VHH | IGHV3 | N.A. | Z | N.A. | DVQLQASGGGSVQAGGSLRLSCAASGHSFANYHVAWIRQTPGKEREFVGSASRRDDSTYYADFALGRFIISRDNDINTAYLQMNSLKPEDSAVYYCVAAVMAQTTQGWTTDYDLRGQGTQVTVSS | N.A. | DVQLQASGGGSVQAGGSLRLSCAASGHSFANYHVAWIRQTPGKEREFVGSASRRDDSTYYADFALGRFIISRDNDINTAYLQMNSLKPEDSAVYYCVAAVMAQTTQGWTTDYDLRGQGTQVTVSS | N.A. | 13.829524 | 0 | 125 | 0 | 125 | 0 | 125 | 0 | 0 | single domain antibody (nanobody) v3a8f | N.A. | lama glama | N.A. | N | protein | e2 envelope glycoprotein | venezuelan equine encephalitis virus | 18 | 6 | 0.67 | H_only | train |
9nrz_X | 9nrz | venezuelan equine encephalitis virus in complex with the single domain antibody v3a8f | no | viral protein/immune system | 2025-03-14 | 2025-12-03 | electron microscopy | 4.3 | N.A. | N.A. | 41400357 | 10.1128/jvi.01875-25 | 0 | auth_asym_id | VHH | IGHV3 | N.A. | X | N.A. | DVQLQASGGGSVQAGGSLRLSCAASGHSFANYHVAWIRQTPGKEREFVGSASRRDDSTYYADFALGRFIISRDNDINTAYLQMNSLKPEDSAVYYCVAAVMAQTTQGWTTDYDLRGQGTQVTVSS | N.A. | DVQLQASGGGSVQAGGSLRLSCAASGHSFANYHVAWIRQTPGKEREFVGSASRRDDSTYYADFALGRFIISRDNDINTAYLQMNSLKPEDSAVYYCVAAVMAQTTQGWTTDYDLRGQGTQVTVSS | N.A. | 13.873705 | 0 | 125 | 0 | 125 | 0 | 125 | 0 | 0 | single domain antibody (nanobody) v3a8f | N.A. | lama glama | N.A. | Q;B | protein;protein | e2 envelope glycoprotein;e1 envelope glycoprotein | venezuelan equine encephalitis virus;venezuelan equine encephalitis virus | 20;10 | 7;5 | 0.64;1.0 | H_only | train |
9u4w_S | 9u4w | cryo-em structure of pig gnrhr bound with mammal gnrh | yes | membrane protein | 2025-03-20 | 2025-06-11 | electron microscopy | 3.18 | N.A. | N.A. | 40523184 | 10.1073/pnas.2500112122 | 0 | auth_asym_id | scFv | N.A. | N.A. | S | N.A. | MLLVNQSHQGFNKEHTSKMVSAIVLYVLLAAAAHSAFAVQLVESGGGLVQPGGSRKLSCSASGFAFSSFGMHWVRQAPEKGLEWVAYISSGSGTIYYADTVKGRFTISRDDPKNTLFLQMTSLRSEDTAMYYCVRSIYYYGSSPFDFWGQGTTLTVSAGGGGSGGGGSGGGGSADIVMTQATSSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLTISRLEAEDVGVYYCMQHLEYPLTFGAGTKLEL | N.A. | VQLVESGGGLVQPGGSRKLSCSASGFAFSSFGMHWVRQAPEKGLEWVAYISSGSGTIYYADTVKGRFTISRDDPKNTLFLQMTSLRSEDTAMYYCVRSIYYYGSSPFDFWGQGTTLTVSAGGGGSGGGGSGGGGSADIVMTQATSSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLTISRLEAEDVGVYYCMQHLEYPLTFGAGTKLEL | N.A. | 17.297386 | 0 | 285 | 0 | 232 | 0 | 247 | 0 | 0 | scfv16 | N.A. | homo sapiens | N.A. | B;A | protein;protein | guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1;guanine nucleotide-binding protein g(q) subunit alpha-1 | homo sapiens;homo sapiens | 24;33 | 10;21 | 0.83;0.91 | H_only | train |
9u5c_B | 9u5c | structure of htrpc3 in complex with nb1-94 at 2.25 angstrom | no | metal transport | 2025-03-21 | 2025-10-08 | electron microscopy | 2.25 | N.A. | N.A. | 41125595 | 10.1038/s41467-025-64435-6 | 0 | auth_asym_id | VHH | IGHV3 | N.A. | B | N.A. | QVQLQESGGGSVQSGGSLRLSCAASGYTYSYSGYCMGWFRQAPGKEREGVATIDGAGNTKYADSVKGRFTISRDNAKKTLYLQMNSLKPEDTAMYYCAARVYSYSSDVDCRPSFTTRFPYSGQGTQVTV | N.A. | QVQLQESGGGSVQSGGSLRLSCAASGYTYSYSGYCMGWFRQAPGKEREGVATIDGAGNTKYADSVKGRFTISRDNAKKTLYLQMNSLKPEDTAMYYCAARVYSYSSDVDCRPSFTTRFPYSGQGTQVTV | N.A. | 13.681837 | 0 | 129 | 0 | 129 | 0 | 129 | 0 | 0 | nb1-94 | N.A. | camelus | N.A. | A;C | protein;protein | short transient receptor potential channel 3;short transient receptor potential channel 3 | homo sapiens;homo sapiens | 38;41 | 17;10 | 0.94;0.48 | H_only | train |
9u5c_H | 9u5c | structure of htrpc3 in complex with nb1-94 at 2.25 angstrom | no | metal transport | 2025-03-21 | 2025-10-08 | electron microscopy | 2.25 | N.A. | N.A. | 41125595 | 10.1038/s41467-025-64435-6 | 0 | auth_asym_id | VHH | IGHV3 | N.A. | H | N.A. | QVQLQESGGGSVQSGGSLRLSCAASGYTYSYSGYCMGWFRQAPGKEREGVATIDGAGNTKYADSVKGRFTISRDNAKKTLYLQMNSLKPEDTAMYYCAARVYSYSSDVDCRPSFTTRFPYSGQGTQVTV | N.A. | QVQLQESGGGSVQSGGSLRLSCAASGYTYSYSGYCMGWFRQAPGKEREGVATIDGAGNTKYADSVKGRFTISRDNAKKTLYLQMNSLKPEDTAMYYCAARVYSYSSDVDCRPSFTTRFPYSGQGTQVTV | N.A. | 13.681834 | 0 | 129 | 0 | 129 | 0 | 129 | 0 | 0 | nb1-94 | N.A. | camelus | N.A. | A;G | protein;protein | short transient receptor potential channel 3;short transient receptor potential channel 3 | homo sapiens;homo sapiens | 41;38 | 10;17 | 0.48;0.94 | H_only | train |
9u5c_D | 9u5c | structure of htrpc3 in complex with nb1-94 at 2.25 angstrom | no | metal transport | 2025-03-21 | 2025-10-08 | electron microscopy | 2.25 | N.A. | N.A. | 41125595 | 10.1038/s41467-025-64435-6 | 0 | auth_asym_id | VHH | IGHV3 | N.A. | D | N.A. | QVQLQESGGGSVQSGGSLRLSCAASGYTYSYSGYCMGWFRQAPGKEREGVATIDGAGNTKYADSVKGRFTISRDNAKKTLYLQMNSLKPEDTAMYYCAARVYSYSSDVDCRPSFTTRFPYSGQGTQVTV | N.A. | QVQLQESGGGSVQSGGSLRLSCAASGYTYSYSGYCMGWFRQAPGKEREGVATIDGAGNTKYADSVKGRFTISRDNAKKTLYLQMNSLKPEDTAMYYCAARVYSYSSDVDCRPSFTTRFPYSGQGTQVTV | N.A. | 13.681835 | 0 | 129 | 0 | 129 | 0 | 129 | 0 | 0 | nb1-94 | N.A. | camelus | N.A. | C;E | protein;protein | short transient receptor potential channel 3;short transient receptor potential channel 3 | homo sapiens;homo sapiens | 38;41 | 17;10 | 0.94;0.48 | H_only | train |
9u5c_F | 9u5c | structure of htrpc3 in complex with nb1-94 at 2.25 angstrom | no | metal transport | 2025-03-21 | 2025-10-08 | electron microscopy | 2.25 | N.A. | N.A. | 41125595 | 10.1038/s41467-025-64435-6 | 0 | auth_asym_id | VHH | IGHV3 | N.A. | F | N.A. | QVQLQESGGGSVQSGGSLRLSCAASGYTYSYSGYCMGWFRQAPGKEREGVATIDGAGNTKYADSVKGRFTISRDNAKKTLYLQMNSLKPEDTAMYYCAARVYSYSSDVDCRPSFTTRFPYSGQGTQVTV | N.A. | QVQLQESGGGSVQSGGSLRLSCAASGYTYSYSGYCMGWFRQAPGKEREGVATIDGAGNTKYADSVKGRFTISRDNAKKTLYLQMNSLKPEDTAMYYCAARVYSYSSDVDCRPSFTTRFPYSGQGTQVTV | N.A. | 13.681834 | 0 | 129 | 0 | 129 | 0 | 129 | 0 | 0 | nb1-94 | N.A. | camelus | N.A. | E;G | protein;protein | short transient receptor potential channel 3;short transient receptor potential channel 3 | homo sapiens;homo sapiens | 38;41 | 17;10 | 0.94;0.48 | H_only | train |
9nwu_A_B | 9nwu | crystal structure of a high affinity vl-vh tetrabody for the erythropoietin receptor | no | signaling protein | 2025-03-24 | 2025-10-01 | x-ray diffraction | 1.96 | 0.215 | 0.167 | 40960423 | 10.1002/pro.70292 | 0 | auth_asym_id | VHVL:VHVL | N.A. | N.A. | A | B | DIQMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASSLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQSSYSLITFGQGTKVEIKGGGGGEVQLVESGGGLVQPGGSLRLSCAASGFNLRSYYMHWVRQAPGKGLEWVASISPYYSYTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARHGYGAMDYWGQGTLVTVSS | DIQMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASSLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQSSYSLITFGQGTKVEIKGGGGGEVQLVESGGGLVQPGGSLRLSCAASGFNLRSYYMHWVRQAPGKGLEWVASISPYYSYTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARHGYGAMDYWGQGTLVTVSS | DIQMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASSLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQSSYSLITFGQGTKVEIKGGGGGEVQLVESGGGLVQPGGSLRLSCAASGFNLRSYYMHWVRQAPGKGLEWVASISPYYSYTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARHGYGAMDYWGQGTLVTVSS | DIQMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASSLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQSSYSLITFGQGTKVEIKGGGGGEVQLVESGGGLVQPGGSLRLSCAASGFNLRSYYMHWVRQAPGKGLEWVASISPYYSYTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARHGYGAMDYWGQGTLVTVSS | 22.26451 | 23.091248 | 229 | 229 | 228 | 226 | 229 | 229 | 95 | diabody | diabody | homo sapiens | homo sapiens | N.A. | N.A. | N.A. | N.A. | 0 | 0 | 0 | HL | train |
9nwu_C_D | 9nwu | crystal structure of a high affinity vl-vh tetrabody for the erythropoietin receptor | no | signaling protein | 2025-03-24 | 2025-10-01 | x-ray diffraction | 1.96 | 0.215 | 0.167 | 40960423 | 10.1002/pro.70292 | 0 | auth_asym_id | VHVL:VHVL | N.A. | N.A. | C | D | DIQMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASSLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQSSYSLITFGQGTKVEIKGGGGGEVQLVESGGGLVQPGGSLRLSCAASGFNLRSYYMHWVRQAPGKGLEWVASISPYYSYTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARHGYGAMDYWGQGTLVTVSS | DIQMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASSLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQSSYSLITFGQGTKVEIKGGGGGEVQLVESGGGLVQPGGSLRLSCAASGFNLRSYYMHWVRQAPGKGLEWVASISPYYSYTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARHGYGAMDYWGQGTLVTVSS | DIQMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASSLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQSSYSLITFGQGTKVEIKGGGGGEVQLVESGGGLVQPGGSLRLSCAASGFNLRSYYMHWVRQAPGKGLEWVASISPYYSYTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARHGYGAMDYWGQGTLVTVS | DIQMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASSLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQSSYSLITFGQGTKVEIKGGGGGEVQLVESGGGLVQPGGSLRLSCAASGFNLRSYYMHWVRQAPGKGLEWVASISPYYSYTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARHGYGAMDYWGQGTLVTVSS | 23.221317 | 23.401566 | 229 | 229 | 223 | 226 | 228 | 229 | 94 | diabody | diabody | homo sapiens | homo sapiens | N.A. | N.A. | N.A. | N.A. | 0 | 0 | 0 | HL | train |
9u74_H_G | 9u74 | respiratory syncytial virus pre-f trimer bound by neutralizing antibody pr306007 | yes | structural protein/immune system | 2025-03-24 | 2025-11-12 | electron microscopy | 4.08 | N.A. | N.A. | 41248206 | 10.1371/journal.ppat.1013674 | 0 | auth_asym_id | VH:VL | IGHV1 | IGKV1 | H | G | VQLVQSGAEVKKPGASVKVSCKASGYTFTSYDINWVRQATGQGLEWMGWMNPNSGNTGYAQKFQGRVTMTRQTSRSTAYMELSSLRSEDTAVYYCAREDWGSAAFDSWGQGTMVTVSSA | IQLTQSPSTLSASVNDRVTLTCRASQSISSWLAWYQQKPGKAPKLLIYQASSLQSGVPSRFTGSGSGTEFTLTISSLQPDDFATYYCQQFNSYWTFGQGTKVEI | VQLVQSGAEVKKPGASVKVSCKASGYTFTSYDINWVRQATGQGLEWMGWMNPNSGNTGYAQKFQGRVTMTRQTSRSTAYMELSSLRSEDTAVYYCAREDWGSAAFDSWGQGTMVTVSSA | IQLTQSPSTLSASVNDRVTLTCRASQSISSWLAWYQQKPGKAPKLLIYQASSLQSGVPSRFTGSGSGTEFTLTISSLQPDDFATYYCQQFNSYWTFGQGTKVEI | 13.987464 | 13.355003 | 119 | 104 | 119 | 104 | 119 | 104 | 37 | pr306007 hight chain protein | pr306007 light chain protein | homo sapiens | homo sapiens | B | protein | fusion glycoprotein f1 | respiratory syncytial virus a2 | 38 | 16 | 0.73 | HL | train |
9nww_D_C | 9nww | single-particle cryo-em structure of the first variant of mobilized colistin resistance (mcr-1) in its ligand-bound state | no | transferase | 2025-03-24 | 2025-12-17 | electron microscopy | 3.58 | N.A. | N.A. | 41298376 | 10.1038/s41467-025-65515-3 | 0 | auth_asym_id | VH:VL | IGHV3 | IGKV1 | D | C | EISEVQLVESGGGLVQPGGSLRLSCAASGFNVYYSSIHWVRQAPGKGLEWVASIYSSYSSTSYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCASGNFSSWWSHGWYALYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHT | SDIQMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASSLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQSYWPITFGQGTKVEIKRTVAAPSVFIFPPSDSQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | EVQLVESGGGLVQPGGSLRLSCAASGFNVYYSSIHWVRQAPGKGLEWVASIYSSYSSTSYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCASGNFSSWWSHGWYALYWGQGTLVTVS | SPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASSLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQSYWPITFGQGTKVE | 14.773495 | 12.850198 | 235 | 214 | 123 | 98 | 123 | 98 | 54 | fab (mr6) heavy (h) chain | fab (mr6) light (l) chain | homo sapiens | homo sapiens | B | protein | probable phosphatidylethanolamine transferase mcr-1 | escherichia coli | 53 | 20 | 0.8 | HL | train |
9u80_H_L | 9u80 | cryo-em structure of conivaptan-bound human vasopressin v2 receptor complex with fab | no | membrane protein/immune system | 2025-03-25 | 2025-12-10 | electron microscopy | 2.94 | N.A. | N.A. | 41188237 | 10.1038/s41467-025-64735-x | 0 | auth_asym_id | FabH:FabL | IGHV3 | IGKV1 | H | L | EISEVQLVESGGGLVQPGGSLRLSCAASGFNVVDFSLHWVRQAPGKGLEWVAYISSSSGSTSYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARWGYWPGEPWWKAFDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKS | SDIQMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASSLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQYLYYSLVTFGQGTKVEIKRTVAAPSVFIFPPSDSQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | EVQLVESGGGLVQPGGSLRLSCAASGFNVVDFSLHWVRQAPGKGLEWVAYISSSSGSTSYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARWGYWPGEPWWKAFDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK | DIQMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASSLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQYLYYSLVTFGQGTKVEIKRTVAAPSVFIFPPSDSQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNR | 23.611261 | 22.760162 | 229 | 216 | 225 | 212 | 225 | 212 | 107 | anti-bril fab heavy chain | anti-bril fab light chain | homo sapiens | homo sapiens | R | protein | vasopressin v2 receptor,soluble cytochrome b562 | homo sapiens | 42 | 18 | 0.82 | HL | train |
9u81_H_L | 9u81 | cryo-em structure of tolvaptan-bound human vasopressin v2 receptor complex with fab | no | membrane protein/immune system | 2025-03-25 | 2025-12-10 | electron microscopy | 3.08 | N.A. | N.A. | 41188237 | 10.1038/s41467-025-64735-x | 0 | auth_asym_id | FabH:FabL | IGHV3 | IGKV1 | H | L | ELSEVQLVESGGGLVQPGGSLRLSCAASGFNVVDFSLHWVRQAPGKGLEWVAYISSSSGSTSYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARWGYWPGEPWWKAFDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKS | SDIQMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASSLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQYLYYSLVTFGQGTKVEIKRTVAAPSVFIFPPSDSQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | EVQLVESGGGLVQPGGSLRLSCAASGFNVVDFSLHWVRQAPGKGLEWVAYISSSSGSTSYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARWGYWPGEPWWKAFDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK | DIQMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASSLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQYLYYSLVTFGQGTKVEIKRTVAAPSVFIFPPSDSQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNR | 23.617899 | 22.734926 | 229 | 216 | 225 | 212 | 225 | 212 | 100 | anti-bril fab heavy chain | anti-bril fab light chain | homo sapiens | homo sapiens | R | protein | vasopressin v2 receptor,soluble cytochrome b562 | homo sapiens | 37 | 18 | 0.82 | HL | train |
9u8g_E | 9u8g | crystal structure of tmprss2 in complex with nanobody77_10 | yes | immune system | 2025-03-26 | 2025-07-30 | x-ray diffraction | 2 | 0.23 | 0.193 | 40681508 | 10.1038/s41467-025-62023-2 | 0 | auth_asym_id | VHH | IGHV3 | N.A. | E | N.A. | AVQLQASGGGFVQPGGSLRLSCAASGKVVEQGLMGWFRQAPGKEREFVSAIQYDTKLEYYADSVKGRFTISRDNSKNTVYLQMNSLRAEDTATYYCATPQMWVQRDRDDRWYWGQGTQVTVSSGSHHHHHH | N.A. | VQLQASGGGFVQPGGSLRLSCAASGKVVEQGLMGWFRQAPGKEREFVSAIQYDTKLEYYADSVKGRFTISRDNSKNTVYLQMNSLRAEDTATYYCATPQMWVQRDRDDRWYWGQGTQVTVSS | N.A. | 13.948393 | 0 | 131 | 0 | 120 | 0 | 122 | 0 | 0 | nanobody | N.A. | vicugna pacos | N.A. | B | protein | transmembrane protease serine 2 catalytic chain | homo sapiens | 55 | 14 | 0.7 | H_only | train |
9u8g_F | 9u8g | crystal structure of tmprss2 in complex with nanobody77_10 | yes | immune system | 2025-03-26 | 2025-07-30 | x-ray diffraction | 2 | 0.23 | 0.193 | 40681508 | 10.1038/s41467-025-62023-2 | 0 | auth_asym_id | VHH | IGHV3 | N.A. | F | N.A. | AVQLQASGGGFVQPGGSLRLSCAASGKVVEQGLMGWFRQAPGKEREFVSAIQYDTKLEYYADSVKGRFTISRDNSKNTVYLQMNSLRAEDTATYYCATPQMWVQRDRDDRWYWGQGTQVTVSSGSHHHHHH | N.A. | VQLQASGGGFVQPGGSLRLSCAASGKVVEQGLMGWFRQAPGKEREFVSAIQYDTKLEYYADSVKGRFTISRDNSKNTVYLQMNSLRAEDTATYYCATPQMWVQRDRDDRWYWGQGTQVTVSS | N.A. | 13.946566 | 0 | 131 | 0 | 120 | 0 | 122 | 0 | 0 | nanobody | N.A. | vicugna pacos | N.A. | D | protein | transmembrane protease serine 2 catalytic chain | homo sapiens | 57 | 14 | 0.67 | H_only | train |
9nyx_A | 9nyx | structure of native bovine rhodopsin in complex with mb7 in the dark state | yes | isomerase/immune system | 2025-03-29 | 2026-02-04 | electron microscopy | 3.1 | N.A. | N.A. | 41650224 | 10.1073/pnas.2532336123 | 0 | auth_asym_id | VH | IGHV3 | N.A. | A | N.A. | VQLVESGGGLVXXXXXXXXXXXSLRLSCAASGFTFSRYVMNWVRQAPGKGLEWVSGISRDGSYTDYADSVKGRFTISRDNAKDTLYLQMNSLKPEDTAVYYCSKYNSVVTTPPGQGTQVTVS | N.A. | QLVESGGGLVXXXXXXXXXXXSLRLSCAASGFTFSRYVMNWVRQAPGKGLEWVSGISRDGSYTDYADSVKGRFTISRDNAKDTLYLQMNSLKPEDTAVYYCSKYNSVVTTPPGQGTQVTVS | N.A. | 12.868777 | 0 | 122 | 0 | 109 | 0 | 121 | 0 | 0 | megabody 7 | N.A. | lama glama | N.A. | B | protein | rhodopsin | bos taurus | 35 | 10 | 0.59 | H_only | train |
9nyx_C | 9nyx | structure of native bovine rhodopsin in complex with mb7 in the dark state | yes | isomerase/immune system | 2025-03-29 | 2026-02-04 | electron microscopy | 3.1 | N.A. | N.A. | 41650224 | 10.1073/pnas.2532336123 | 0 | auth_asym_id | VH | IGHV3 | N.A. | C | N.A. | VQLVESGGGLVXXXXXXXXXXXSLRLSCAASGFTFSRYVMNWVRQAPGKGLEWVSGISRDGSYTDYADSVKGRFTISRDNAKDTLYLQMNSLKPEDTAVYYCSKYNSVVTTPPGQGTQVTVS | N.A. | VQLVESGGGLVXXXXXXXXXXXSLRLSCAASGFTFSRYVMNWVRQAPGKGLEWVSGISRDGSYTDYADSVKGRFTISRDNAKDTLYLQMNSLKPEDTAVYYCSKYNSVVTTPPGQGTQVTVS | N.A. | 13.007031 | 0 | 122 | 0 | 111 | 0 | 122 | 0 | 0 | megabody 7 | N.A. | lama glama | N.A. | D | protein | rhodopsin | bos taurus | 40 | 12 | 0.6 | H_only | train |
9ua9_H_D | 9ua9 | nipah virus fusion glycoprotein in complex with a broadly neutralizing antibody 1d6 | no | viral protein/immune system | 2025-03-31 | 2025-04-09 | electron microscopy | 1.99 | N.A. | N.A. | 40298900 | 10.1002/advs.202501996 | 0 | auth_asym_id | VH:VL | IGHV4 | IGLV1 | H | D | QVQLQESGPGLVKPSETLSLTCTVSGASISSYWWGWIRQPPGKGLEWIADIYPNSGSTNYNPSLKSRVTNSKDASKNQFSLKLSSVTAADTAMYYCARAPRGYSYSYVFGHRFDVWGPGVLVTVS | PVLTQPPSASEAARKSVTISCSGSSSNIGSNSVSWYQQLPGTALKLLISYNDQRASGVSDRFSGSKSGTSASLAISGLQTEDEADYYCAAWDDSLSGPVFGGGTRLTVL | QVQLQESGPGLVKPSETLSLTCTVSGASISSYWWGWIRQPPGKGLEWIADIYPNSGSTNYNPSLKSRVTNSKDASKNQFSLKLSSVTAADTAMYYCARAPRGYSYSYVFGHRFDVWGPGVLVTVS | PVLTQPPSASEAARKSVTISCSGSSSNIGSNSVSWYQQLPGTALKLLISYNDQRASGVSDRFSGSKSGTSASLAISGLQTEDEADYYCAAWDDSLSGPVFGGGTRLTVL | 14.873344 | 13.535734 | 125 | 109 | 125 | 109 | 125 | 109 | 45 | 1d6 vh | 1d6-vl | macaca | macaca | A;B | protein;protein | fusion glycoprotein f0;fusion glycoprotein f0 | henipavirus nipahense;henipavirus nipahense | 29;22 | 14;7 | 1.0;0.7 | HL | train |
9ua9_G_E | 9ua9 | nipah virus fusion glycoprotein in complex with a broadly neutralizing antibody 1d6 | no | viral protein/immune system | 2025-03-31 | 2025-04-09 | electron microscopy | 1.99 | N.A. | N.A. | 40298900 | 10.1002/advs.202501996 | 0 | auth_asym_id | VH:VL | IGHV4 | IGLV1 | G | E | QVQLQESGPGLVKPSETLSLTCTVSGASISSYWWGWIRQPPGKGLEWIADIYPNSGSTNYNPSLKSRVTNSKDASKNQFSLKLSSVTAADTAMYYCARAPRGYSYSYVFGHRFDVWGPGVLVTVS | PVLTQPPSASEAARKSVTISCSGSSSNIGSNSVSWYQQLPGTALKLLISYNDQRASGVSDRFSGSKSGTSASLAISGLQTEDEADYYCAAWDDSLSGPVFGGGTRLTVL | QVQLQESGPGLVKPSETLSLTCTVSGASISSYWWGWIRQPPGKGLEWIADIYPNSGSTNYNPSLKSRVTNSKDASKNQFSLKLSSVTAADTAMYYCARAPRGYSYSYVFGHRFDVWGPGVLVTVS | PVLTQPPSASEAARKSVTISCSGSSSNIGSNSVSWYQQLPGTALKLLISYNDQRASGVSDRFSGSKSGTSASLAISGLQTEDEADYYCAAWDDSLSGPVFGGGTRLTVL | 14.875004 | 13.530005 | 125 | 109 | 125 | 109 | 125 | 109 | 45 | 1d6 vh | 1d6-vl | macaca | macaca | A;C | protein;protein | fusion glycoprotein f0;fusion glycoprotein f0 | henipavirus nipahense;henipavirus nipahense | 22;27 | 7;14 | 0.7;1.0 | HL | train |
9ua9_I_F | 9ua9 | nipah virus fusion glycoprotein in complex with a broadly neutralizing antibody 1d6 | no | viral protein/immune system | 2025-03-31 | 2025-04-09 | electron microscopy | 1.99 | N.A. | N.A. | 40298900 | 10.1002/advs.202501996 | 0 | auth_asym_id | VH:VL | IGHV4 | IGLV1 | I | F | QVQLQESGPGLVKPSETLSLTCTVSGASISSYWWGWIRQPPGKGLEWIADIYPNSGSTNYNPSLKSRVTNSKDASKNQFSLKLSSVTAADTAMYYCARAPRGYSYSYVFGHRFDVWGPGVLVTVS | PVLTQPPSASEAARKSVTISCSGSSSNIGSNSVSWYQQLPGTALKLLISYNDQRASGVSDRFSGSKSGTSASLAISGLQTEDEADYYCAAWDDSLSGPVFGGGTRLTVL | QVQLQESGPGLVKPSETLSLTCTVSGASISSYWWGWIRQPPGKGLEWIADIYPNSGSTNYNPSLKSRVTNSKDASKNQFSLKLSSVTAADTAMYYCARAPRGYSYSYVFGHRFDVWGPGVLVTVS | PVLTQPPSASEAARKSVTISCSGSSSNIGSNSVSWYQQLPGTALKLLISYNDQRASGVSDRFSGSKSGTSASLAISGLQTEDEADYYCAAWDDSLSGPVFGGGTRLTVL | 14.874723 | 13.532426 | 125 | 109 | 125 | 109 | 125 | 109 | 44 | 1d6 vh | 1d6-vl | macaca | macaca | B;C | protein;protein | fusion glycoprotein f0;fusion glycoprotein f0 | henipavirus nipahense;henipavirus nipahense | 27;22 | 14;7 | 1.0;0.7 | HL | train |
9nz3_D_C | 9nz3 | sars-cov m protein dimer in complex with jnj-9676 and fab b | no | membrane protein/immune system/inhibitor | 2025-03-31 | 2025-10-29 | electron microscopy | 3.07 | N.A. | N.A. | 41286109 | 10.1038/s42003-025-09042-3 | 0 | auth_asym_id | FabH:FabL | IGHV1 | IGKV7 | D | C | EVQLQQSGPELVKPGASMKISCKTSGYSFTGYTMNWVKQSHGKNLEWIGLINPYNGDTSYNQKFKGKATLTVDKSSSTAYMELLSLTSEDSAVYYCEVINTYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPRDCGSGSHHHHHH | ASDIVMTQSPASLAVSLGQRATISCKASQSIDYDGDNYMNWYQQKPGQPPKLLIYTTSNLESGIPARFSGSGSGTDFTLNIHPVEEGDAATYYCQQNNEDPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC | EVQLQQSGPELVKPGASMKISCKTSGYSFTGYTMNWVKQSHGKNLEWIGLINPYNGDTSYNQKFKGKATLTVDKSSSTAYMELLSLTSEDSAVYYCEVINTYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPR | DIVMTQSPASLAVSLGQRATISCKASQSIDYDGDNYMNWYQQKPGQPPKLLIYTTSNLESGIPARFSGSGSGTDFTLNIHPVEEGDAATYYCQQNNEDPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC | 21.855474 | 24.443363 | 225 | 220 | 213 | 218 | 213 | 218 | 86 | fab b heavy chain | fab b light chain | homo sapiens | homo sapiens | A;B | protein;protein | membrane protein;membrane protein | sars-cov-2 pseudovirus;sars-cov-2 pseudovirus | 14;55 | 7;25 | 1.0;0.76 | HL | train |
9nz3_F_E | 9nz3 | sars-cov m protein dimer in complex with jnj-9676 and fab b | no | membrane protein/immune system/inhibitor | 2025-03-31 | 2025-10-29 | electron microscopy | 3.07 | N.A. | N.A. | 41286109 | 10.1038/s42003-025-09042-3 | 0 | auth_asym_id | FabH:FabL | IGHV1 | IGKV7 | F | E | EVQLQQSGPELVKPGASMKISCKTSGYSFTGYTMNWVKQSHGKNLEWIGLINPYNGDTSYNQKFKGKATLTVDKSSSTAYMELLSLTSEDSAVYYCEVINTYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPRDCGSGSHHHHHH | ASDIVMTQSPASLAVSLGQRATISCKASQSIDYDGDNYMNWYQQKPGQPPKLLIYTTSNLESGIPARFSGSGSGTDFTLNIHPVEEGDAATYYCQQNNEDPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC | EVQLQQSGPELVKPGASMKISCKTSGYSFTGYTMNWVKQSHGKNLEWIGLINPYNGDTSYNQKFKGKATLTVDKSSSTAYMELLSLTSEDSAVYYCEVINTYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPR | DIVMTQSPASLAVSLGQRATISCKASQSIDYDGDNYMNWYQQKPGQPPKLLIYTTSNLESGIPARFSGSGSGTDFTLNIHPVEEGDAATYYCQQNNEDPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC | 21.84803 | 24.365059 | 225 | 220 | 213 | 218 | 213 | 218 | 87 | fab b heavy chain | fab b light chain | homo sapiens | homo sapiens | A;B | protein;protein | membrane protein;membrane protein | sars-cov-2 pseudovirus;sars-cov-2 pseudovirus | 57;12 | 24;6 | 0.73;1.0 | HL | train |
9nz4_D_C | 9nz4 | sars-cov m protein dimer in complex with fab b | no | membrane protein/immune system/inhibitor | 2025-03-31 | 2025-10-29 | electron microscopy | 3.23 | N.A. | N.A. | 41286109 | 10.1038/s42003-025-09042-3 | 0 | auth_asym_id | FabH:FabL | IGHV1 | IGKV7 | D | C | EVQLQQSGPELVKPGASMKISCKTSGYSFTGYTMNWVKQSHGKNLEWIGLINPYNGDTSYNQKFKGKATLTVDKSSSTAYMELLSLTSEDSAVYYCEVINTYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPRDCGSGSHHHHHH | ASDIVMTQSPASLAVSLGQRATISCKASQSIDYDGDNYMNWYQQKPGQPPKLLIYTTSNLESGIPARFSGSGSGTDFTLNIHPVEEGDAATYYCQQNNEDPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC | EVQLQQSGPELVKPGASMKISCKTSGYSFTGYTMNWVKQSHGKNLEWIGLINPYNGDTSYNQKFKGKATLTVDKSSSTAYMELLSLTSEDSAVYYCEVINTYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPR | DIVMTQSPASLAVSLGQRATISCKASQSIDYDGDNYMNWYQQKPGQPPKLLIYTTSNLESGIPARFSGSGSGTDFTLNIHPVEEGDAATYYCQQNNEDPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC | 21.836504 | 24.457079 | 225 | 220 | 213 | 218 | 213 | 218 | 85 | fab b heavy chain | fab b light chain | homo sapiens | homo sapiens | A;B | protein;protein | membrane protein;membrane protein | severe acute respiratory syndrome coronavirus;severe acute respiratory syndrome coronavirus | 48;10 | 22;5 | 0.73;1.0 | HL | train |
9nz4_F_E | 9nz4 | sars-cov m protein dimer in complex with fab b | no | membrane protein/immune system/inhibitor | 2025-03-31 | 2025-10-29 | electron microscopy | 3.23 | N.A. | N.A. | 41286109 | 10.1038/s42003-025-09042-3 | 0 | auth_asym_id | FabH:FabL | IGHV1 | IGKV7 | F | E | EVQLQQSGPELVKPGASMKISCKTSGYSFTGYTMNWVKQSHGKNLEWIGLINPYNGDTSYNQKFKGKATLTVDKSSSTAYMELLSLTSEDSAVYYCEVINTYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPRDCGSGSHHHHHH | ASDIVMTQSPASLAVSLGQRATISCKASQSIDYDGDNYMNWYQQKPGQPPKLLIYTTSNLESGIPARFSGSGSGTDFTLNIHPVEEGDAATYYCQQNNEDPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC | EVQLQQSGPELVKPGASMKISCKTSGYSFTGYTMNWVKQSHGKNLEWIGLINPYNGDTSYNQKFKGKATLTVDKSSSTAYMELLSLTSEDSAVYYCEVINTYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPR | DIVMTQSPASLAVSLGQRATISCKASQSIDYDGDNYMNWYQQKPGQPPKLLIYTTSNLESGIPARFSGSGSGTDFTLNIHPVEEGDAATYYCQQNNEDPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC | 21.849201 | 24.370249 | 225 | 220 | 213 | 218 | 213 | 218 | 84 | fab b heavy chain | fab b light chain | homo sapiens | homo sapiens | A;B | protein;protein | membrane protein;membrane protein | severe acute respiratory syndrome coronavirus;severe acute respiratory syndrome coronavirus | 10;52 | 5;22 | 1.0;0.67 | HL | train |
9nz5_B_C | 9nz5 | mersmut-cov m protein dimer in complex with fab b | no | membrane protein/immune system/inhibitor | 2025-03-31 | 2025-10-29 | electron microscopy | 3.15 | N.A. | N.A. | 41286109 | 10.1038/s42003-025-09042-3 | 0 | auth_asym_id | FabH:FabL | IGHV1 | IGKV7 | B | C | EVQLQQSGPELVKPGASMKISCKTSGYSFTGYTMNWVKQSHGKNLEWIGLINPYNGDTSYNQKFKGKATLTVDKSSSTAYMELLSLTSEDSAVYYCEVINTYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPRDCGSGSHHHHHH | ASDIVMTQSPASLAVSLGQRATISCKASQSIDYDGDNYMNWYQQKPGQPPKLLIYTTSNLESGIPARFSGSGSGTDFTLNIHPVEEGDAATYYCQQNNEDPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC | EVQLQQSGPELVKPGASMKISCKTSGYSFTGYTMNWVKQSHGKNLEWIGLINPYNGDTSYNQKFKGKATLTVDKSSSTAYMELLSLTSEDSAVYYCEVINTYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPR | DIVMTQSPASLAVSLGQRATISCKASQSIDYDGDNYMNWYQQKPGQPPKLLIYTTSNLESGIPARFSGSGSGTDFTLNIHPVEEGDAATYYCQQNNEDPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC | 21.390127 | 23.818666 | 225 | 220 | 213 | 218 | 213 | 218 | 98 | fab b heavy chain | fab b light chain | homo sapiens | homo sapiens | A | protein | membrane protein | middle east respiratory syndrome-related coronavirus | 59 | 25 | 0.71 | HL | train |
9nz5_F_E | 9nz5 | mersmut-cov m protein dimer in complex with fab b | no | membrane protein/immune system/inhibitor | 2025-03-31 | 2025-10-29 | electron microscopy | 3.15 | N.A. | N.A. | 41286109 | 10.1038/s42003-025-09042-3 | 0 | auth_asym_id | FabH:FabL | IGHV1 | IGKV7 | F | E | EVQLQQSGPELVKPGASMKISCKTSGYSFTGYTMNWVKQSHGKNLEWIGLINPYNGDTSYNQKFKGKATLTVDKSSSTAYMELLSLTSEDSAVYYCEVINTYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPRDCGSGSHHHHHH | ASDIVMTQSPASLAVSLGQRATISCKASQSIDYDGDNYMNWYQQKPGQPPKLLIYTTSNLESGIPARFSGSGSGTDFTLNIHPVEEGDAATYYCQQNNEDPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC | EVQLQQSGPELVKPGASMKISCKTSGYSFTGYTMNWVKQSHGKNLEWIGLINPYNGDTSYNQKFKGKATLTVDKSSSTAYMELLSLTSEDSAVYYCEVINTYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPR | DIVMTQSPASLAVSLGQRATISCKASQSIDYDGDNYMNWYQQKPGQPPKLLIYTTSNLESGIPARFSGSGSGTDFTLNIHPVEEGDAATYYCQQNNEDPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC | 21.404001 | 23.890774 | 225 | 220 | 213 | 218 | 213 | 218 | 97 | fab b heavy chain | fab b light chain | homo sapiens | homo sapiens | D | protein | membrane protein | middle east respiratory syndrome-related coronavirus | 50 | 20 | 0.71 | HL | train |
9qpy_D | 9qpy | structure of the complement classical and lectin pathway c3 convertase | yes | immune system | 2025-03-31 | 2025-12-24 | electron microscopy | 4.3 | N.A. | N.A. | N.A. | N.A. | 0 | auth_asym_id | VHH | IGHV3 | N.A. | D | N.A. | EVQLVESGGGLVQAGGSLRLSCVASERTYMAWFRQAPGKEREFVAAITSSGMMTEYAPSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCAADLRQRFGERVTEYDYWGQGTQVTVSS | N.A. | VQLVESGGGLVQAGGSLRLSCVASERTYMAWFRQAPGKEREFVAAITSSGMMTEYAPSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCAADLRQRFGERVTEYDYWGQGTQVTVSS | N.A. | 13.457535 | 0 | 120 | 0 | 116 | 0 | 119 | 0 | 0 | anti-c4b nanobody b12 | N.A. | lama glama | N.A. | C | protein | complement c4-a | homo sapiens | 30 | 12 | 1 | H_only | train |
9ua5_G_K | 9ua5 | rabv g binding with ctb011 fab and ctb012 fab | no | viral protein/immune system | 2025-03-31 | 2026-01-07 | electron microscopy | 3.94 | N.A. | N.A. | 40827441 | 10.1080/22221751.2025.2547724 | 0 | auth_asym_id | VH:VL | IGHV1 | IGKV1 | G | K | QVQLVQSGAEVKKPGASVKVSCKASGYSFTDYIMLWVRQAPGQRLEWIGDIYPYYGSTSYNLKFKGKATLTVDTSASTAYMELSSLRSEDTAVYYCARQGGDGNYVLFDYWGQGTLVTV | DIQMTQSPSSLSASVGDRVTITCKASQNVGTTVAWYQQKPGKAPKALIYSASYRYSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQYNSYPFTFGQGTKLEI | QVQLVQSGAEVKKPGASVKVSCKASGYSFTDYIMLWVRQAPGQRLEWIGDIYPYYGSTSYNLKFKGKATLTVDTSASTAYMELSSLRSEDTAVYYCARQGGDGNYVLFDYWGQGTLVTV | DIQMTQSPSSLSASVGDRVTITCKASQNVGTTVAWYQQKPGKAPKALIYSASYRYSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQYNSYPFTFGQGTKLEI | 14.158262 | 13.279826 | 119 | 106 | 119 | 106 | 119 | 106 | 30 | ctb011 fab heavy chain | ctb011 fab light chain | mus musculus | mus musculus | C | protein | glycoprotein | lyssavirus rabies | 36 | 14 | 0.78 | HL | train |
9ua5_H_D | 9ua5 | rabv g binding with ctb011 fab and ctb012 fab | no | viral protein/immune system | 2025-03-31 | 2026-01-07 | electron microscopy | 3.94 | N.A. | N.A. | 40827441 | 10.1080/22221751.2025.2547724 | 0 | auth_asym_id | VH:VL | IGHV3 | IGKV2 | H | D | EVQLVESGGGLVQPGGSLILSCAASGFTFSGFAMSWVRQAPGKGLEWVATISSGGTYTYSPDSVMGRFTISRDNAKNSLYLQMNSLRAEDTAVYYCARRLRRNYYSMDYWGQGTMVTV | DIVMTQSPLSLPVTPGEPASISCKSTKSLLNSDGFTYLDWYLQKPGQSPQLLIYLVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCFQSNYLPFTFGGGTKVEI | EVQLVESGGGLVQPGGSLILSCAASGFTFSGFAMSWVRQAPGKGLEWVATISSGGTYTYSPDSVMGRFTISRDNAKNSLYLQMNSLRAEDTAVYYCARRLRRNYYSMDYWGQGTMVTV | DIVMTQSPLSLPVTPGEPASISCKSTKSLLNSDGFTYLDWYLQKPGQSPQLLIYLVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCFQSNYLPFTFGGGTKVEI | 13.787533 | 13.660914 | 118 | 111 | 118 | 111 | 118 | 111 | 36 | ctb012 fab heavy chain | ctb012 fab light chain | mus musculus | mus musculus | C | protein | glycoprotein | lyssavirus rabies | 39 | 19 | 0.86 | HL | train |
9qqn_D_C | 9qqn | junin virus gp1-gp2 heterodimer in complex with fab of jun1 | no | viral protein | 2025-04-01 | 2025-06-11 | x-ray diffraction | 2.55 | 0.237 | 0.201 | 40511941 | 10.1128/mbio.01076-25 | 0 | auth_asym_id | FabH:FabL | IGHV3 | IGKV1 | D | C | ETGQIQLVQSVETGGGLVRPGNSLKLSCVTSGFTFSNYQMHWLRQPPGKRLEWIAVITVKSDNYGANYVESVKGRFAISRDDSKSSVYLEMNRLREEDTATYFCSRSGIYDGYYAYAMDYWGQGTSVTVSSATTKGPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSQTVTCNVAHPASSTKVDKKIVPRDCGTKHHHHHH | ETGSVVMTQSQKFMSTSVGDRVSITCKASQIVGTSVAWYQQKAGQSPKLLIYWASTRHTGVPDRFTAGGSGTDFTLTITNVQSEDLADYFCQQYATYPLTFGSGTKLELKRTDAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC | TGQIQLVQSVETGGGLVRPGNSLKLSCVTSGFTFSNYQMHWLRQPPGKRLEWIAVITVKSDNYGANYVESVKGRFAISRDDSKSSVYLEMNRLREEDTATYFCSRSGIYDGYYAYAMDYWGQGTSVTVSSATTKGPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSQTVTCNVAHPASSTKVDKKIVPR | SVVMTQSQKFMSTSVGDRVSITCKASQIVGTSVAWYQQKAGQSPKLLIYWASTRHTGVPDRFTAGGSGTDFTLTITNVQSEDLADYFCQQYATYPLTFGSGTKLELKRTDAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNR | 23.498196 | 22.685362 | 242 | 217 | 226 | 211 | 230 | 211 | 95 | chains: d | chains: c | mus musculus | mus musculus | A | protein | pre-glycoprotein polyprotein gp complex | mammarenavirus juninense | 41 | 21 | 0.84 | HL | train |
9uaq_D | 9uaq | cryoem structure of gfp-like protein from aequorea coerulescens with trimbody | yes | structural protein | 2025-04-01 | 2026-02-11 | electron microscopy | 2.29 | N.A. | N.A. | N.A. | N.A. | 0 | auth_asym_id | VHH+ | IGHV3 | N.A. | D | N.A. | QVQLVESGGALVQPGGSLRLSCAASGFPVNRYSMRWYRQAPGKEREWVAGMSSAGDRSSYEDSVKGRFTISRDDARNTVYLQMNSLKPEDTAVYYCNVNVGFEYWGQGTLVAVVKTVEDAFLALLALEQHLGVQPADLAALAEKLNLSQLLELGELLKAAGHPLAPQVEALLKEKLKAASAAEAAGVIFQALVKDEELGKKILEWAKEFGTEEAKKAIEIAEKAYELYKKYLE | N.A. | QVQLVESGGALVQPGGSLRLSCAASGFPVNRYSMRWYRQAPGKEREWVAGMSSAGDRSSYEDSVKGRFTISRDDARNTVYLQMNSLKPEDTAVYYCNVNVGFEYWGQGTLVAVVKTVEDAFLALLALEQHLGVQPADLAALAEKLNLSQLLELGELLKAAGHPLAPQVEALLKEKLKAASAAEAAGVIFQALVKDEELGKKILEWAKEFGTEEAKKAIEIAEKAYELYKKYL | N.A. | 23.232878 | 0 | 233 | 0 | 232 | 0 | 232 | 0 | 0 | gfp-nanobody-tail | N.A. | synthetic construct | N.A. | G | protein | green fluorescent protein | aequorea coerulescens | 42 | 7 | 0.33 | H_only | train |
9uaq_E | 9uaq | cryoem structure of gfp-like protein from aequorea coerulescens with trimbody | yes | structural protein | 2025-04-01 | 2026-02-11 | electron microscopy | 2.29 | N.A. | N.A. | N.A. | N.A. | 0 | auth_asym_id | VHH+ | IGHV3 | N.A. | E | N.A. | QVQLVESGGALVQPGGSLRLSCAASGFPVNRYSMRWYRQAPGKEREWVAGMSSAGDRSSYEDSVKGRFTISRDDARNTVYLQMNSLKPEDTAVYYCNVNVGFEYWGQGTLVAVVKTVEDAFLALLALEQHLGVQPADLAALAEKLNLSQLLELGELLKAAGHPLAPQVEALLKEKLKAASAAEAAGVIFQALVKDEELGKKILEWAKEFGTEEAKKAIEIAEKAYELYKKYLE | N.A. | QVQLVESGGALVQPGGSLRLSCAASGFPVNRYSMRWYRQAPGKEREWVAGMSSAGDRSSYEDSVKGRFTISRDDARNTVYLQMNSLKPEDTAVYYCNVNVGFEYWGQGTLVAVVKTVEDAFLALLALEQHLGVQPADLAALAEKLNLSQLLELGELLKAAGHPLAPQVEALLKEKLKAASAAEAAGVIFQALVKDEELGKKILEWAKEFGTEEAKKAIEIAEKAYELYKKYL | N.A. | 23.191408 | 0 | 233 | 0 | 232 | 0 | 232 | 0 | 0 | gfp-nanobody-tail | N.A. | synthetic construct | N.A. | H | protein | green fluorescent protein | aequorea coerulescens | 42 | 7 | 0.35 | H_only | train |
9uaq_F | 9uaq | cryoem structure of gfp-like protein from aequorea coerulescens with trimbody | yes | structural protein | 2025-04-01 | 2026-02-11 | electron microscopy | 2.29 | N.A. | N.A. | N.A. | N.A. | 0 | auth_asym_id | VHH+ | IGHV3 | N.A. | F | N.A. | QVQLVESGGALVQPGGSLRLSCAASGFPVNRYSMRWYRQAPGKEREWVAGMSSAGDRSSYEDSVKGRFTISRDDARNTVYLQMNSLKPEDTAVYYCNVNVGFEYWGQGTLVAVVKTVEDAFLALLALEQHLGVQPADLAALAEKLNLSQLLELGELLKAAGHPLAPQVEALLKEKLKAASAAEAAGVIFQALVKDEELGKKILEWAKEFGTEEAKKAIEIAEKAYELYKKYLE | N.A. | QVQLVESGGALVQPGGSLRLSCAASGFPVNRYSMRWYRQAPGKEREWVAGMSSAGDRSSYEDSVKGRFTISRDDARNTVYLQMNSLKPEDTAVYYCNVNVGFEYWGQGTLVAVVKTVEDAFLALLALEQHLGVQPADLAALAEKLNLSQLLELGELLKAAGHPLAPQVEALLKEKLKAASAAEAAGVIFQALVKDEELGKKILEWAKEFGTEEAKKAIEIAEKAYELYKKYLE | N.A. | 23.279911 | 0 | 233 | 0 | 233 | 0 | 233 | 0 | 0 | gfp-nanobody-tail | N.A. | synthetic construct | N.A. | I | protein | green fluorescent protein | aequorea coerulescens | 37 | 7 | 0.39 | H_only | train |
9ubr_G | 9ubr | cryoem structure of human galectin-10 with itrimbody | no | structural protein | 2025-04-03 | 2026-02-11 | electron microscopy | 2.62 | N.A. | N.A. | N.A. | N.A. | 0 | auth_asym_id | VHH | IGHV3 | N.A. | G | N.A. | EVQLLESGGGSVQAGGSLRLSCTASGYTYSVAWFRQAPGNEREGVAVISNYGATTYSDSVKGRFTISRDNAKNAVSLQMNSLKSEDTAMYYCAAGSAFSLSPGRFPYWGQGTQVTVSS | N.A. | EVQLLESGGGSVQAGGSLRLSCTASGYTYSVAWFRQAPGNEREGVAVISNYGATTYSDSVKGRFTISRDNAKNAVSLQMNSLKSEDTAMYYCAAGSAFSLSPGRFPYWGQGTQVTVSS | N.A. | 13.13586 | 0 | 118 | 0 | 118 | 0 | 118 | 0 | 0 | hgal10-nanobody | N.A. | synthetic construct | N.A. | M | protein | galectin-10 | homo sapiens | 31 | 12 | 0.75 | H_only | train |
9ubr_H | 9ubr | cryoem structure of human galectin-10 with itrimbody | no | structural protein | 2025-04-03 | 2026-02-11 | electron microscopy | 2.62 | N.A. | N.A. | N.A. | N.A. | 0 | auth_asym_id | VHH | IGHV3 | N.A. | H | N.A. | EVQLLESGGGSVQAGGSLRLSCTASGYTYSVAWFRQAPGNEREGVAVISNYGATTYSDSVKGRFTISRDNAKNAVSLQMNSLKSEDTAMYYCAAGSAFSLSPGRFPYWGQGTQVTVSS | N.A. | EVQLLESGGGSVQAGGSLRLSCTASGYTYSVAWFRQAPGNEREGVAVISNYGATTYSDSVKGRFTISRDNAKNAVSLQMNSLKSEDTAMYYCAAGSAFSLSPGRFPYWGQGTQVTVSS | N.A. | 13.167414 | 0 | 118 | 0 | 118 | 0 | 118 | 0 | 0 | hgal10-nanobody | N.A. | synthetic construct | N.A. | N | protein | galectin-10 | homo sapiens | 35 | 12 | 0.67 | H_only | train |
9ubr_I | 9ubr | cryoem structure of human galectin-10 with itrimbody | no | structural protein | 2025-04-03 | 2026-02-11 | electron microscopy | 2.62 | N.A. | N.A. | N.A. | N.A. | 0 | auth_asym_id | VHH | IGHV3 | N.A. | I | N.A. | EVQLLESGGGSVQAGGSLRLSCTASGYTYSVAWFRQAPGNEREGVAVISNYGATTYSDSVKGRFTISRDNAKNAVSLQMNSLKSEDTAMYYCAAGSAFSLSPGRFPYWGQGTQVTVSS | N.A. | EVQLLESGGGSVQAGGSLRLSCTASGYTYSVAWFRQAPGNEREGVAVISNYGATTYSDSVKGRFTISRDNAKNAVSLQMNSLKSEDTAMYYCAAGSAFSLSPGRFPYWGQGTQVTVSS | N.A. | 13.141993 | 0 | 118 | 0 | 118 | 0 | 118 | 0 | 0 | hgal10-nanobody | N.A. | synthetic construct | N.A. | O | protein | galectin-10 | homo sapiens | 32 | 12 | 0.75 | H_only | train |
9ubr_L | 9ubr | cryoem structure of human galectin-10 with itrimbody | no | structural protein | 2025-04-03 | 2026-02-11 | electron microscopy | 2.62 | N.A. | N.A. | N.A. | N.A. | 0 | auth_asym_id | VHH | IGHV3 | N.A. | L | N.A. | EVQLLESGGGSVQAGGSLRLSCTASGYTYSVAWFRQAPGNEREGVAVISNYGATTYSDSVKGRFTISRDNAKNAVSLQMNSLKSEDTAMYYCAAGSAFSLSPGRFPYWGQGTQVTVSS | N.A. | EVQLLESGGGSVQAGGSLRLSCTASGYTYSVAWFRQAPGNEREGVAVISNYGATTYSDSVKGRFTISRDNAKNAVSLQMNSLKSEDTAMYYCAAGSAFSLSPGRFPYWGQGTQVTVSS | N.A. | 13.178989 | 0 | 118 | 0 | 118 | 0 | 118 | 0 | 0 | hgal10-nanobody | N.A. | synthetic construct | N.A. | O;R | protein;protein | galectin-10;galectin-10 | homo sapiens;homo sapiens | 10;31 | 5;12 | 1.0;0.75 | H_only | train |
9ubr_J | 9ubr | cryoem structure of human galectin-10 with itrimbody | no | structural protein | 2025-04-03 | 2026-02-11 | electron microscopy | 2.62 | N.A. | N.A. | N.A. | N.A. | 0 | auth_asym_id | VHH | IGHV3 | N.A. | J | N.A. | EVQLLESGGGSVQAGGSLRLSCTASGYTYSVAWFRQAPGNEREGVAVISNYGATTYSDSVKGRFTISRDNAKNAVSLQMNSLKSEDTAMYYCAAGSAFSLSPGRFPYWGQGTQVTVSS | N.A. | EVQLLESGGGSVQAGGSLRLSCTASGYTYSVAWFRQAPGNEREGVAVISNYGATTYSDSVKGRFTISRDNAKNAVSLQMNSLKSEDTAMYYCAAGSAFSLSPGRFPYWGQGTQVTVSS | N.A. | 13.15582 | 0 | 118 | 0 | 118 | 0 | 118 | 0 | 0 | hgal10-nanobody | N.A. | synthetic construct | N.A. | P | protein | galectin-10 | homo sapiens | 35 | 12 | 0.67 | H_only | train |
9ubr_K | 9ubr | cryoem structure of human galectin-10 with itrimbody | no | structural protein | 2025-04-03 | 2026-02-11 | electron microscopy | 2.62 | N.A. | N.A. | N.A. | N.A. | 0 | auth_asym_id | VHH | IGHV3 | N.A. | K | N.A. | EVQLLESGGGSVQAGGSLRLSCTASGYTYSVAWFRQAPGNEREGVAVISNYGATTYSDSVKGRFTISRDNAKNAVSLQMNSLKSEDTAMYYCAAGSAFSLSPGRFPYWGQGTQVTVSS | N.A. | EVQLLESGGGSVQAGGSLRLSCTASGYTYSVAWFRQAPGNEREGVAVISNYGATTYSDSVKGRFTISRDNAKNAVSLQMNSLKSEDTAMYYCAAGSAFSLSPGRFPYWGQGTQVTVSS | N.A. | 13.150789 | 0 | 118 | 0 | 118 | 0 | 118 | 0 | 0 | hgal10-nanobody | N.A. | synthetic construct | N.A. | Q | protein | galectin-10 | homo sapiens | 31 | 12 | 0.75 | H_only | train |
9o2r_H_L | 9o2r | bg505-ds sosip in complex with 007 bnab fabs - class 1 (1 fab bound) | no | viral protein/immune system | 2025-04-04 | 2025-10-01 | electron microscopy | 3 | N.A. | N.A. | 40964353 | 10.1101/2025.09.05.674437 | 0 | auth_asym_id | VH:VL | IGHV4 | IGKV1 | H | L | QARLQQWEGRPLKPAETLSLTCGVHGVGLGGSGWGWIRQPPGQGLQWIGEIDHDGSHKHNPALRSRLSMSLDTSRNQVSLRLTSVTAADTAIYYCVRVYREKFLIGEFLTDYRFMDMWGTGTTVIVSPASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDKTHHHHHH | AIQLTQAPLTVSASIGDTITLTCRASQDISIWLSWYRQMPGKAPELLIYAASTLRGGVPSRFSGARSGTDFSLKIKNLQPEDFATYYCFQSDSYPRAFGQGTKVEITRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | QARLQQWEGRPLKPAETLSLTCGVHGVGLGGSGWGWIRQPPGQGLQWIGEIDHDGSHKHNPALRSRLSMSLDTSRNQVSLRLTSVTAADTAIYYCVRVYREKFLIGEFLTDYRFMDMWGTGTTVIVS | AIQLTQAPLTVSASIGDTITLTCRASQDISIWLSWYRQMPGKAPELLIYAASTLRGGVPSRFSGARSGTDFSLKIKNLQPEDFATYYCFQSDSYPRAFGQGTKVEIT | 15.346152 | 13.152718 | 240 | 214 | 127 | 107 | 127 | 107 | 53 | 007 fab heavy chain | 007 light chain | homo sapiens | homo sapiens | A | protein | envelope glycoprotein gp120 | human immunodeficiency virus 1 | 18 | 8 | 1 | HL | train |
9o2t_H_L | 9o2t | bg505-ds sosip in complex with 007 bnab fabs - class 3 (3 fabs bound) | no | viral protein/immune system | 2025-04-04 | 2025-10-01 | electron microscopy | 3.4 | N.A. | N.A. | 40964353 | 10.1101/2025.09.05.674437 | 0 | auth_asym_id | VH:VL | IGHV4 | IGKV1 | H | L | QARLQQWEGRPLKPAETLSLTCGVHGVGLGGSGWGWIRQPPGQGLQWIGEIDHDGSHKHNPALRSRLSMSLDTSRNQVSLRLTSVTAADTAIYYCVRVYREKFLIGEFLTDYRFMDMWGTGTTVIVSPASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDKTHHHHHH | AIQLTQAPLTVSASIGDTITLTCRASQDISIWLSWYRQMPGKAPELLIYAASTLRGGVPSRFSGARSGTDFSLKIKNLQPEDFATYYCFQSDSYPRAFGQGTKVEITRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | QARLQQWEGRPLKPAETLSLTCGVHGVGLGGSGWGWIRQPPGQGLQWIGEIDHDGSHKHNPALRSRLSMSLDTSRNQVSLRLTSVTAADTAIYYCVRVYREKFLIGEFLTDYRFMDMWGTGTTVIVS | AIQLTQAPLTVSASIGDTITLTCRASQDISIWLSWYRQMPGKAPELLIYAASTLRGGVPSRFSGARSGTDFSLKIKNLQPEDFATYYCFQSDSYPRAFGQGTKVEIT | 15.346144 | 13.15273 | 240 | 214 | 127 | 107 | 127 | 107 | 53 | 007 fab heavy chain | 007 light chain | homo sapiens | homo sapiens | A | protein | envelope glycoprotein gp120 | human immunodeficiency virus 1 | 18 | 8 | 1 | HL | train |
9o2t_J_K | 9o2t | bg505-ds sosip in complex with 007 bnab fabs - class 3 (3 fabs bound) | no | viral protein/immune system | 2025-04-04 | 2025-10-01 | electron microscopy | 3.4 | N.A. | N.A. | 40964353 | 10.1101/2025.09.05.674437 | 0 | auth_asym_id | VH:VL | IGHV4 | IGKV1 | J | K | QARLQQWEGRPLKPAETLSLTCGVHGVGLGGSGWGWIRQPPGQGLQWIGEIDHDGSHKHNPALRSRLSMSLDTSRNQVSLRLTSVTAADTAIYYCVRVYREKFLIGEFLTDYRFMDMWGTGTTVIVSPASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDKTHHHHHH | AIQLTQAPLTVSASIGDTITLTCRASQDISIWLSWYRQMPGKAPELLIYAASTLRGGVPSRFSGARSGTDFSLKIKNLQPEDFATYYCFQSDSYPRAFGQGTKVEITRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | QARLQQWEGRPLKPAETLSLTCGVHGVGLGGSGWGWIRQPPGQGLQWIGEIDHDGSHKHNPALRSRLSMSLDTSRNQVSLRLTSVTAADTAIYYCVRVYREKFLIGEFLTDYRFMDMWGTGTTVIVS | AIQLTQAPLTVSASIGDTITLTCRASQDISIWLSWYRQMPGKAPELLIYAASTLRGGVPSRFSGARSGTDFSLKIKNLQPEDFATYYCFQSDSYPRAFGQGTKVEIT | 15.346128 | 13.152724 | 240 | 214 | 127 | 107 | 127 | 107 | 53 | 007 fab heavy chain | 007 light chain | homo sapiens | homo sapiens | C | protein | envelope glycoprotein gp120 | human immunodeficiency virus 1 | 18 | 8 | 1 | HL | train |
9o2t_M_N | 9o2t | bg505-ds sosip in complex with 007 bnab fabs - class 3 (3 fabs bound) | no | viral protein/immune system | 2025-04-04 | 2025-10-01 | electron microscopy | 3.4 | N.A. | N.A. | 40964353 | 10.1101/2025.09.05.674437 | 0 | auth_asym_id | VH:VL | IGHV4 | IGKV1 | M | N | QARLQQWEGRPLKPAETLSLTCGVHGVGLGGSGWGWIRQPPGQGLQWIGEIDHDGSHKHNPALRSRLSMSLDTSRNQVSLRLTSVTAADTAIYYCVRVYREKFLIGEFLTDYRFMDMWGTGTTVIVSPASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDKTHHHHHH | AIQLTQAPLTVSASIGDTITLTCRASQDISIWLSWYRQMPGKAPELLIYAASTLRGGVPSRFSGARSGTDFSLKIKNLQPEDFATYYCFQSDSYPRAFGQGTKVEITRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | QARLQQWEGRPLKPAETLSLTCGVHGVGLGGSGWGWIRQPPGQGLQWIGEIDHDGSHKHNPALRSRLSMSLDTSRNQVSLRLTSVTAADTAIYYCVRVYREKFLIGEFLTDYRFMDMWGTGTTVIVS | AIQLTQAPLTVSASIGDTITLTCRASQDISIWLSWYRQMPGKAPELLIYAASTLRGGVPSRFSGARSGTDFSLKIKNLQPEDFATYYCFQSDSYPRAFGQGTKVEIT | 15.34614 | 13.152717 | 240 | 214 | 127 | 107 | 127 | 107 | 53 | 007 fab heavy chain | 007 light chain | homo sapiens | homo sapiens | E | protein | envelope glycoprotein gp120 | human immunodeficiency virus 1 | 18 | 8 | 1 | HL | train |
9qrv_H_L | 9qrv | crystal structure of an anti-vwf ck domain fab in complex with the c-terminal ck domain of cynomolgus monkey von willebrand factor. | no | blood clotting | 2025-04-04 | 2026-02-11 | x-ray diffraction | 2.5 | 0.249 | 0.217 | N.A. | N.A. | 0 | auth_asym_id | FabH:FabL | IGHV1 | IGKV1 | H | L | QVQLVQSGAEVKKPGASVKVSCKVSGSTFSNYAIHWVRQAPGKGLEWMGGIVPLSGTAIYAQKFQGRVTMTEDTSTDTAYMELSSLKSEDTAVYYCARDQGESSGWYAIYEGMDVWGQGTTVTVSSASTKGPSVFPLAPCSRSTSESTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTKTYTCNVDHKPSNTKVDKRV | DIQMTQSPSSVSASVGDRVTITCRASQGIGTYLAWYQQKPGKAPKLLIYGASTRATGVPSRFSGSGSGTDFTLTISSLQPEDFANYYCQQSYSKVTFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | QVQLVQSGAEVKKPGASVKVSCKVSGSTFSNYAIHWVRQAPGKGLEWMGGIVPLSGTAIYAQKFQGRVTMTEDTSTDTAYMELSSLKSEDTAVYYCARDQGESSGWYAIYEGMDVWGQGTTVTVSSASTKGPSVFPLAPCSRSTSESTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTKTYTCNVDHKPSNTKVDKRV | DIQMTQSPSSVSASVGDRVTITCRASQGIGTYLAWYQQKPGKAPKLLIYGASTRATGVPSRFSGSGSGTDFTLTISSLQPEDFANYYCQQSYSKVTFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | 22.755798 | 23.0848 | 224 | 213 | 224 | 213 | 224 | 213 | 99 | vh-ch1 | kappa light chain | synthetic construct | synthetic construct | D | protein | von willebrand factor | macaca fascicularis | 27 | 14 | 0.93 | HL | train |
9ucl_D | 9ucl | cryoem structure of igv domain of human nectin-4 with trimbody | no | structural protein | 2025-04-04 | 2026-02-11 | electron microscopy | 2.43 | N.A. | N.A. | N.A. | N.A. | 0 | auth_asym_id | VHH+ | IGHV3 | N.A. | D | N.A. | MAEVQLQASGGGFVQPGGSLRLSCAASGRFSAFYNMGWFRQAPGKEREFVSAISWSTNSAAYYADSVKGRFTISRDNSKNTVYLQMNSLRAEDTATYYCAASWHWNPPDHSWDAGYWGQGTLVAVVKTVEDAFLALLALEQHLGVQPADLAALAEKLNLSQLLELGELLKAAGHPLAPQVEALLKEKLKAASAAEAAGVIFQALVKDEELGKKILEWAKEFGTEEAKKAIEIAEKAYELYKKYLEHHHHHH | N.A. | EVQLQASGGGFVQPGGSLRLSCAASGRFSAFYNMGWFRQAPGKEREFVSAISWSTNSAAYYADSVKGRFTISRDNSKNTVYLQMNSLRAEDTATYYCAASWHWNPPDHSWDAGYWGQGTLVAVVKTVEDAFLALLALEQHLGVQPADLAALAEKLNLSQLLELGELLKAAGHPLAPQVEALLKEKLKAASAAEAAGVIFQALVKDEELGKKILEWAKEFGTEEAKKAIEIAEKAYELYKKYL | N.A. | 23.593378 | 0 | 251 | 0 | 242 | 0 | 242 | 0 | 0 | n4-nanobody-tail | N.A. | synthetic construct | N.A. | G | protein | nectin-4 | homo sapiens | 34 | 12 | 0.92 | H_only | train |
9ucl_E | 9ucl | cryoem structure of igv domain of human nectin-4 with trimbody | no | structural protein | 2025-04-04 | 2026-02-11 | electron microscopy | 2.43 | N.A. | N.A. | N.A. | N.A. | 0 | auth_asym_id | VHH+ | IGHV3 | N.A. | E | N.A. | MAEVQLQASGGGFVQPGGSLRLSCAASGRFSAFYNMGWFRQAPGKEREFVSAISWSTNSAAYYADSVKGRFTISRDNSKNTVYLQMNSLRAEDTATYYCAASWHWNPPDHSWDAGYWGQGTLVAVVKTVEDAFLALLALEQHLGVQPADLAALAEKLNLSQLLELGELLKAAGHPLAPQVEALLKEKLKAASAAEAAGVIFQALVKDEELGKKILEWAKEFGTEEAKKAIEIAEKAYELYKKYLEHHHHHH | N.A. | EVQLQASGGGFVQPGGSLRLSCAASGRFSAFYNMGWFRQAPGKEREFVSAISWSTNSAAYYADSVKGRFTISRDNSKNTVYLQMNSLRAEDTATYYCAASWHWNPPDHSWDAGYWGQGTLVAVVKTVEDAFLALLALEQHLGVQPADLAALAEKLNLSQLLELGELLKAAGHPLAPQVEALLKEKLKAASAAEAAGVIFQALVKDEELGKKILEWAKEFGTEEAKKAIEIAEKAYELYKKYL | N.A. | 23.604881 | 0 | 251 | 0 | 242 | 0 | 242 | 0 | 0 | n4-nanobody-tail | N.A. | synthetic construct | N.A. | H | protein | nectin-4 | homo sapiens | 38 | 12 | 0.86 | H_only | train |
9ucl_F | 9ucl | cryoem structure of igv domain of human nectin-4 with trimbody | no | structural protein | 2025-04-04 | 2026-02-11 | electron microscopy | 2.43 | N.A. | N.A. | N.A. | N.A. | 0 | auth_asym_id | VHH+ | IGHV3 | N.A. | F | N.A. | MAEVQLQASGGGFVQPGGSLRLSCAASGRFSAFYNMGWFRQAPGKEREFVSAISWSTNSAAYYADSVKGRFTISRDNSKNTVYLQMNSLRAEDTATYYCAASWHWNPPDHSWDAGYWGQGTLVAVVKTVEDAFLALLALEQHLGVQPADLAALAEKLNLSQLLELGELLKAAGHPLAPQVEALLKEKLKAASAAEAAGVIFQALVKDEELGKKILEWAKEFGTEEAKKAIEIAEKAYELYKKYLEHHHHHH | N.A. | EVQLQASGGGFVQPGGSLRLSCAASGRFSAFYNMGWFRQAPGKEREFVSAISWSTNSAAYYADSVKGRFTISRDNSKNTVYLQMNSLRAEDTATYYCAASWHWNPPDHSWDAGYWGQGTLVAVVKTVEDAFLALLALEQHLGVQPADLAALAEKLNLSQLLELGELLKAAGHPLAPQVEALLKEKLKAASAAEAAGVIFQALVKDEELGKKILEWAKEFGTEEAKKAIEIAEKAYELYKKYL | N.A. | 23.617805 | 0 | 251 | 0 | 242 | 0 | 242 | 0 | 0 | n4-nanobody-tail | N.A. | synthetic construct | N.A. | I | protein | nectin-4 | homo sapiens | 31 | 12 | 0.92 | H_only | train |
9ucp_C | 9ucp | cryo-em structure of m1 muscarinic acetylcholine receptor-alpha5 helix of g11 protein complex bound to iperoxo and nanobody nb1b4 | no | membrane protein/immune system | 2025-04-05 | 2025-10-29 | electron microscopy | 2.88 | N.A. | N.A. | N.A. | N.A. | 0 | auth_asym_id | VHH | IGHV3 | N.A. | C | N.A. | QVQLQESGGGLVQAGGSLRLSCAASGSIFYGYYMGWYRQAPGKEREFVATINYGASTNYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCAVRRVYVYVQRYYHYYWGQGTQVTVSS | N.A. | VQLQESGGGLVQAGGSLRLSCAASGSIFYGYYMGWYRQAPGKEREFVATINYGASTNYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCAVRRVYVYVQRYYHYYWGQGTQVTV | N.A. | 13.462974 | 0 | 122 | 0 | 111 | 0 | 119 | 0 | 0 | nanobody nb1b4 | N.A. | vicugna pacos | N.A. | N.A. | N.A. | N.A. | N.A. | 0 | 0 | 0 | H_only | train |
9o38_E | 9o38 | transmembrane domains of the human sweet receptor (tas1r2 + tas1r3) from class 3 particles (rigidly fitted from pdb:9nox and 9nor) | no | hydrolase/immune system | 2025-04-06 | 2025-05-14 | electron microscopy | 3 | N.A. | N.A. | 40339580 | 10.1016/j.cell.2025.04.021 | 0 | auth_asym_id | VHH | IGHV3 | N.A. | E | N.A. | MKYLLPTAAAGLLLLAAQPAMAQVQLQESGGGLVQPGGSLRLSCAASGFTFSNYKMNWVRQAPGKGLEWVSDISQSGASISYTGSVKGRFTISRDNAKNTLYLQMNSLKPEDTAVYYCARCPAPFTRDCFDVTSTTYAYRGQGTQVTVSSHHHHHHEPEA | N.A. | QVQLQESGGGLVQPGGSLRLSCAASGFTFSNYKMNWVRQAPGKGLEWVSDISQSGASISYTGSVKGRFTISRDNAKNTLYLQMNSLKPEDTAVYYCARCPAPFTRDCFDVTSTTYAYRGQGTQVTVSS | N.A. | 13.752909 | 0 | 160 | 0 | 128 | 0 | 128 | 0 | 0 | nanobody 35 (nb35) | N.A. | lama glama | N.A. | B;C | protein;protein | taste receptor type 1 member 3,guanine nucleotide-binding protein g(s) subunit alpha isoforms short;guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 | homo sapiens;homo sapiens | 44;29 | 12;11 | 0.55;0.73 | H_only | train |
9udn_A | 9udn | single-chain fv antibody of f8 | no | immune system | 2025-04-07 | 2025-11-05 | x-ray diffraction | 1.81 | 0.22 | 0.18 | N.A. | N.A. | 0 | auth_asym_id | scFv | N.A. | N.A. | A | N.A. | GSQAVVTQESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAALTITGAQTEDEAIYFCALWYSNRWVFGGGTKLTVLGGGGGSGGGGSGGGGSQVQLQQPGAELVKPGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLTVDKPSSTAYMQLSSLTSEDSAVYYCARYRVYYAMDYWGQGTSVTVSS | N.A. | GSQAVVTQESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAALTITGAQTEDEAIYFCALWYSNRWVFGGGTKLTVLGGGGGSGGGGSGGGGSQVQLQQPGAELVKPGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLTVDKPSSTAYMQLSSLTSEDSAVYYCARYRVYYAMDYWGQGTSVTVSS | N.A. | 17.372656 | 0 | 245 | 0 | 236 | 0 | 245 | 0 | 0 | single-chain fv antibody of f8 | N.A. | mus musculus | N.A. | N.A. | N.A. | N.A. | N.A. | 0 | 0 | 0 | H_only | train |
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